Query 016032
Match_columns 396
No_of_seqs 706 out of 1964
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 03:10:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 9.5E-50 2.1E-54 314.8 26.2 309 10-358 105-456 (480)
2 KOG0271 Notchless-like WD40 re 100.0 5.8E-49 1.3E-53 310.3 25.0 296 5-339 142-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-47 5.6E-52 304.6 22.8 284 17-339 172-458 (459)
4 KOG0279 G protein beta subunit 100.0 2.1E-43 4.5E-48 267.7 29.5 294 11-341 6-313 (315)
5 KOG0286 G-protein beta subunit 100.0 8E-44 1.7E-48 271.7 26.9 295 13-339 48-343 (343)
6 KOG0315 G-protein beta subunit 100.0 1.5E-41 3.2E-46 253.6 27.8 293 33-360 10-307 (311)
7 KOG0265 U5 snRNP-specific prot 100.0 4E-42 8.7E-47 263.4 24.0 296 12-339 39-336 (338)
8 KOG0272 U4/U6 small nuclear ri 100.0 4.4E-42 9.4E-47 274.7 18.5 255 4-296 201-458 (459)
9 KOG0645 WD40 repeat protein [G 100.0 3.1E-39 6.7E-44 244.1 30.8 292 11-341 5-311 (312)
10 KOG0285 Pleiotropic regulator 100.0 2.6E-40 5.6E-45 259.4 24.6 299 1-342 133-440 (460)
11 KOG0273 Beta-transducin family 100.0 8.6E-40 1.9E-44 265.1 27.7 317 14-363 173-505 (524)
12 KOG0284 Polyadenylation factor 100.0 2E-40 4.2E-45 264.2 20.3 285 17-340 93-379 (464)
13 KOG0279 G protein beta subunit 100.0 4.8E-39 1E-43 244.1 25.8 261 7-298 50-313 (315)
14 KOG0282 mRNA splicing factor [ 100.0 2.7E-40 5.9E-45 268.9 19.2 293 10-339 204-503 (503)
15 KOG0315 G-protein beta subunit 100.0 8.1E-38 1.8E-42 233.7 25.1 274 5-315 25-305 (311)
16 KOG0295 WD40 repeat-containing 100.0 7.4E-39 1.6E-43 251.6 20.5 298 3-340 91-405 (406)
17 KOG4328 WD40 protein [Function 100.0 7.4E-38 1.6E-42 253.1 25.6 320 2-342 168-496 (498)
18 KOG0291 WD40-repeat-containing 100.0 9.7E-38 2.1E-42 267.1 26.7 313 5-355 292-626 (893)
19 KOG0319 WD40-repeat-containing 100.0 1.8E-38 3.9E-43 270.9 22.0 330 2-355 129-591 (775)
20 KOG0316 Conserved WD40 repeat- 100.0 3.2E-37 6.8E-42 228.7 24.5 287 12-340 9-298 (307)
21 KOG0293 WD40 repeat-containing 100.0 1.6E-37 3.4E-42 248.2 23.3 294 12-342 216-514 (519)
22 KOG0318 WD40 repeat stress pro 100.0 5E-36 1.1E-40 246.6 32.0 311 8-341 178-602 (603)
23 KOG0266 WD40 repeat-containing 100.0 1.4E-36 3E-41 267.9 30.9 295 13-341 151-454 (456)
24 KOG0296 Angio-associated migra 100.0 9.5E-37 2.1E-41 239.9 26.1 317 12-358 56-373 (399)
25 KOG0273 Beta-transducin family 100.0 1.3E-36 2.9E-41 246.7 26.6 277 21-341 236-523 (524)
26 cd00200 WD40 WD40 domain, foun 100.0 6.8E-36 1.5E-40 252.2 32.0 287 13-339 2-289 (289)
27 KOG0319 WD40-repeat-containing 100.0 8.3E-37 1.8E-41 260.8 25.7 323 4-354 88-548 (775)
28 KOG0291 WD40-repeat-containing 100.0 3.3E-36 7.2E-41 257.7 29.0 315 5-349 335-717 (893)
29 KOG0263 Transcription initiati 100.0 7.1E-37 1.5E-41 263.5 22.6 252 12-344 370-652 (707)
30 KOG0640 mRNA cleavage stimulat 100.0 2.4E-36 5.3E-41 233.0 22.5 308 8-340 100-425 (430)
31 KOG0286 G-protein beta subunit 100.0 2.3E-35 4.9E-40 225.6 26.7 268 58-361 49-323 (343)
32 KOG0276 Vesicle coat complex C 100.0 1E-35 2.2E-40 249.8 27.0 310 14-362 7-319 (794)
33 KOG0318 WD40 repeat stress pro 100.0 6.1E-35 1.3E-39 240.2 30.0 310 9-346 136-565 (603)
34 KOG0295 WD40 repeat-containing 100.0 9.8E-37 2.1E-41 239.7 18.3 276 61-365 105-388 (406)
35 KOG0263 Transcription initiati 100.0 3.2E-36 6.9E-41 259.5 21.6 212 10-239 441-652 (707)
36 KOG0296 Angio-associated migra 100.0 2.1E-35 4.6E-40 232.4 23.4 299 4-341 90-398 (399)
37 PLN00181 protein SPA1-RELATED; 100.0 2.1E-34 4.6E-39 272.7 35.1 291 16-340 479-792 (793)
38 KOG0284 Polyadenylation factor 100.0 3.1E-36 6.7E-41 240.3 16.5 247 14-297 132-379 (464)
39 KOG0292 Vesicle coat complex C 100.0 5.6E-35 1.2E-39 254.5 25.1 298 15-349 4-329 (1202)
40 KOG0643 Translation initiation 100.0 1.4E-34 3E-39 218.6 23.0 299 14-341 4-317 (327)
41 KOG1407 WD40 repeat protein [F 100.0 9.1E-34 2E-38 213.5 24.2 276 14-331 14-291 (313)
42 KOG0281 Beta-TrCP (transducin 100.0 3.4E-35 7.4E-40 230.1 17.0 276 19-346 196-482 (499)
43 KOG0278 Serine/threonine kinas 100.0 3.3E-35 7.1E-40 220.0 16.1 290 14-345 8-301 (334)
44 KOG1446 Histone H3 (Lys4) meth 100.0 6.6E-32 1.4E-36 209.3 31.0 296 11-343 5-305 (311)
45 KOG0268 Sof1-like rRNA process 100.0 1.2E-34 2.6E-39 228.0 15.9 294 12-349 58-353 (433)
46 KOG0306 WD40-repeat-containing 100.0 5.6E-33 1.2E-37 238.0 27.2 291 14-345 367-668 (888)
47 KOG0283 WD40 repeat-containing 100.0 1.2E-33 2.6E-38 245.7 22.9 301 14-344 260-579 (712)
48 KOG0275 Conserved WD40 repeat- 100.0 2.3E-34 4.9E-39 223.7 16.4 287 18-339 211-507 (508)
49 KOG0772 Uncharacterized conser 100.0 7.1E-33 1.5E-37 227.7 23.0 311 13-339 160-485 (641)
50 KOG0316 Conserved WD40 repeat- 100.0 3E-32 6.6E-37 202.4 23.3 258 59-355 12-271 (307)
51 KOG0281 Beta-TrCP (transducin 100.0 1.2E-33 2.6E-38 221.5 16.3 260 4-303 221-482 (499)
52 KOG0266 WD40 repeat-containing 100.0 2.9E-32 6.3E-37 240.6 26.6 256 62-352 157-420 (456)
53 KOG2096 WD40 repeat protein [G 100.0 1.3E-31 2.7E-36 207.8 26.6 313 10-343 76-404 (420)
54 KOG0265 U5 snRNP-specific prot 100.0 4.3E-32 9.2E-37 208.5 23.1 266 59-362 42-317 (338)
55 KOG0277 Peroxisomal targeting 100.0 9.1E-33 2E-37 207.4 17.6 205 19-237 59-266 (311)
56 KOG0285 Pleiotropic regulator 100.0 5.9E-32 1.3E-36 212.7 20.9 262 4-297 177-438 (460)
57 KOG0276 Vesicle coat complex C 100.0 1.4E-31 3E-36 225.0 23.5 261 61-358 10-274 (794)
58 KOG0288 WD40 repeat protein Ti 100.0 5.1E-33 1.1E-37 222.4 14.1 289 12-339 167-459 (459)
59 KOG0305 Anaphase promoting com 100.0 3.8E-31 8.2E-36 224.1 25.7 278 25-343 182-463 (484)
60 KOG0282 mRNA splicing factor [ 100.0 2.4E-32 5.1E-37 222.8 17.7 253 9-296 247-503 (503)
61 KOG0292 Vesicle coat complex C 100.0 3E-31 6.5E-36 231.5 25.1 288 5-343 36-350 (1202)
62 KOG0313 Microtubule binding pr 100.0 1E-30 2.2E-35 207.2 24.3 288 19-341 104-418 (423)
63 KOG0274 Cdc4 and related F-box 100.0 1.1E-30 2.3E-35 229.7 26.5 287 14-349 201-490 (537)
64 KOG0645 WD40 repeat protein [G 100.0 5.4E-30 1.2E-34 194.3 25.8 249 17-298 58-311 (312)
65 PTZ00421 coronin; Provisional 100.0 6.6E-30 1.4E-34 224.5 30.3 211 15-240 70-294 (493)
66 KOG0310 Conserved WD40 repeat- 100.0 1.9E-30 4.1E-35 212.1 23.5 284 19-342 25-310 (487)
67 KOG4283 Transcription-coupled 100.0 2.8E-30 6E-35 198.3 22.0 296 15-341 38-365 (397)
68 KOG0289 mRNA splicing factor [ 100.0 9.7E-30 2.1E-34 205.0 26.0 283 21-340 220-505 (506)
69 KOG1273 WD40 repeat protein [G 100.0 3E-30 6.5E-35 199.9 21.8 300 23-351 26-332 (405)
70 KOG0306 WD40-repeat-containing 100.0 2.1E-29 4.6E-34 216.3 28.9 258 61-358 370-639 (888)
71 PTZ00420 coronin; Provisional 100.0 3.2E-29 6.9E-34 221.2 29.9 219 5-239 59-296 (568)
72 cd00200 WD40 WD40 domain, foun 100.0 6.1E-29 1.3E-33 209.7 29.9 259 61-358 6-266 (289)
73 KOG1446 Histone H3 (Lys4) meth 100.0 5.9E-29 1.3E-33 193.0 26.7 268 61-361 11-283 (311)
74 PLN00181 protein SPA1-RELATED; 100.0 5.8E-29 1.3E-33 235.9 32.1 252 19-297 531-792 (793)
75 KOG0293 WD40 repeat-containing 100.0 4.2E-29 9.2E-34 200.2 23.9 279 60-374 220-503 (519)
76 KOG0973 Histone transcription 100.0 3.1E-29 6.7E-34 224.0 24.6 301 20-345 13-359 (942)
77 KOG0264 Nucleosome remodeling 100.0 5.4E-29 1.2E-33 202.0 22.5 269 14-298 118-404 (422)
78 KOG0294 WD40 repeat-containing 100.0 3.6E-28 7.7E-33 188.3 25.9 273 36-352 4-297 (362)
79 PTZ00421 coronin; Provisional 100.0 4.1E-28 8.8E-33 213.3 28.9 264 65-349 21-298 (493)
80 KOG0313 Microtubule binding pr 100.0 7.5E-29 1.6E-33 196.6 21.6 259 9-297 133-417 (423)
81 PTZ00420 coronin; Provisional 100.0 1E-27 2.3E-32 211.7 31.2 259 39-325 50-319 (568)
82 KOG0278 Serine/threonine kinas 100.0 1.1E-29 2.4E-34 190.5 15.2 217 4-240 85-301 (334)
83 KOG0274 Cdc4 and related F-box 100.0 2E-28 4.4E-33 215.4 25.7 266 4-315 232-499 (537)
84 KOG0289 mRNA splicing factor [ 100.0 3.2E-28 6.9E-33 196.3 23.9 259 5-297 246-505 (506)
85 KOG0310 Conserved WD40 repeat- 100.0 7.5E-29 1.6E-33 202.8 20.5 261 63-361 25-288 (487)
86 KOG0647 mRNA export protein (c 100.0 7.4E-28 1.6E-32 185.5 24.7 281 17-331 24-312 (347)
87 KOG0283 WD40 repeat-containing 100.0 4.6E-29 1E-33 217.3 20.4 215 10-238 359-578 (712)
88 KOG1036 Mitotic spindle checkp 100.0 1.7E-27 3.6E-32 184.2 26.5 277 19-331 12-293 (323)
89 KOG0275 Conserved WD40 repeat- 100.0 2.8E-29 6E-34 195.5 16.6 271 61-358 210-484 (508)
90 KOG0277 Peroxisomal targeting 100.0 4.1E-29 8.9E-34 187.8 15.8 212 10-235 94-308 (311)
91 KOG1407 WD40 repeat protein [F 100.0 1.4E-27 3.1E-32 180.3 22.3 253 15-298 59-311 (313)
92 KOG0299 U3 snoRNP-associated p 100.0 1.4E-27 3E-32 194.1 23.4 285 13-331 135-444 (479)
93 KOG0305 Anaphase promoting com 100.0 1.8E-27 4E-32 201.8 25.0 256 5-300 202-463 (484)
94 KOG0772 Uncharacterized conser 100.0 1.2E-27 2.6E-32 197.2 22.6 271 61-353 164-457 (641)
95 KOG0288 WD40 repeat protein Ti 100.0 1.1E-28 2.3E-33 197.8 15.4 253 5-295 202-458 (459)
96 KOG1539 WD repeat protein [Gen 100.0 1.9E-26 4.1E-31 200.4 30.2 323 5-354 187-619 (910)
97 KOG0640 mRNA cleavage stimulat 100.0 6.4E-28 1.4E-32 186.7 18.2 268 61-349 109-391 (430)
98 KOG1274 WD40 repeat protein [G 100.0 9.9E-27 2.1E-31 204.3 27.5 280 17-338 10-297 (933)
99 KOG1332 Vesicle coat complex C 100.0 1.5E-27 3.2E-32 178.5 19.1 260 14-342 5-287 (299)
100 KOG0643 Translation initiation 100.0 1.9E-27 4.1E-32 180.2 19.9 265 4-299 36-318 (327)
101 KOG0300 WD40 repeat-containing 100.0 6.5E-28 1.4E-32 187.4 17.7 219 4-239 174-431 (481)
102 KOG0641 WD40 repeat protein [G 100.0 1.2E-25 2.7E-30 166.6 28.5 284 18-341 30-349 (350)
103 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 5.6E-26 1.2E-30 193.2 31.0 284 34-353 2-291 (300)
104 KOG2055 WD40 repeat protein [G 100.0 1.1E-26 2.3E-31 189.0 23.9 292 20-341 213-512 (514)
105 KOG0264 Nucleosome remodeling 100.0 2.6E-27 5.7E-32 192.2 19.9 213 13-236 170-404 (422)
106 KOG0301 Phospholipase A2-activ 100.0 1.1E-26 2.4E-31 198.0 23.8 283 9-342 3-289 (745)
107 KOG0294 WD40 repeat-containing 100.0 3.4E-26 7.4E-31 177.4 24.3 246 11-301 34-284 (362)
108 KOG0268 Sof1-like rRNA process 100.0 1.2E-27 2.5E-32 188.8 16.2 255 5-302 94-349 (433)
109 KOG1408 WD40 repeat protein [F 100.0 1.6E-26 3.6E-31 197.8 23.8 298 13-342 362-714 (1080)
110 KOG1274 WD40 repeat protein [G 100.0 3.8E-26 8.3E-31 200.6 26.5 252 61-342 10-263 (933)
111 KOG0641 WD40 repeat protein [G 100.0 3E-25 6.5E-30 164.5 24.4 257 11-297 80-348 (350)
112 KOG1408 WD40 repeat protein [F 100.0 9.6E-26 2.1E-30 193.2 24.8 315 22-358 326-688 (1080)
113 KOG0639 Transducin-like enhanc 100.0 1.4E-26 3E-31 190.5 18.5 284 16-340 415-703 (705)
114 KOG0647 mRNA export protein (c 99.9 5.3E-26 1.1E-30 175.4 20.5 260 61-361 24-301 (347)
115 KOG1539 WD repeat protein [Gen 99.9 1.3E-25 2.8E-30 195.3 25.3 307 6-341 230-648 (910)
116 KOG0308 Conserved WD40 repeat- 99.9 2.6E-26 5.7E-31 194.3 19.7 219 11-238 64-287 (735)
117 KOG0269 WD40 repeat-containing 99.9 8.6E-27 1.9E-31 201.0 16.2 204 22-238 89-298 (839)
118 KOG0300 WD40 repeat-containing 99.9 5.8E-26 1.2E-30 176.6 18.8 217 11-239 139-389 (481)
119 KOG0308 Conserved WD40 repeat- 99.9 3.1E-26 6.7E-31 193.9 18.7 286 18-340 19-326 (735)
120 KOG0973 Histone transcription 99.9 8.1E-26 1.7E-30 202.3 22.3 259 10-301 59-358 (942)
121 KOG0269 WD40 repeat-containing 99.9 4.7E-26 1E-30 196.5 19.9 295 21-348 40-347 (839)
122 KOG1063 RNA polymerase II elon 99.9 3E-25 6.5E-30 189.3 23.2 307 10-343 181-650 (764)
123 KOG0299 U3 snoRNP-associated p 99.9 1.8E-25 3.9E-30 181.9 20.4 204 17-238 199-412 (479)
124 KOG0646 WD40 repeat protein [G 99.9 3.7E-25 8E-30 180.4 20.9 277 37-350 11-316 (476)
125 KOG1188 WD40 repeat protein [G 99.9 1.2E-24 2.7E-29 170.7 22.7 287 34-340 41-345 (376)
126 KOG1332 Vesicle coat complex C 99.9 4.3E-25 9.3E-30 165.4 17.9 215 11-236 47-286 (299)
127 KOG0302 Ribosome Assembly prot 99.9 4.8E-25 1E-29 175.1 19.1 214 15-237 146-379 (440)
128 KOG1445 Tumor-specific antigen 99.9 5.9E-25 1.3E-29 186.1 20.3 128 12-149 71-203 (1012)
129 KOG2106 Uncharacterized conser 99.9 1.4E-23 3.1E-28 172.9 26.7 303 3-347 183-527 (626)
130 KOG2106 Uncharacterized conser 99.9 1.5E-23 3.3E-28 172.7 26.2 308 5-340 272-625 (626)
131 KOG0639 Transducin-like enhanc 99.9 4.1E-25 8.9E-30 181.9 16.8 261 62-359 417-681 (705)
132 KOG2445 Nuclear pore complex c 99.9 1.6E-23 3.5E-28 162.2 24.5 261 16-298 9-318 (361)
133 KOG0270 WD40 repeat-containing 99.9 1.8E-24 3.9E-29 175.4 19.9 252 23-305 176-456 (463)
134 KOG1036 Mitotic spindle checkp 99.9 1.4E-23 3E-28 162.6 24.0 251 61-352 10-273 (323)
135 KOG0650 WD40 repeat nucleolar 99.9 7.3E-24 1.6E-28 178.1 24.2 296 12-338 392-732 (733)
136 KOG0321 WD40 repeat-containing 99.9 4.5E-24 9.7E-29 180.6 23.0 286 26-343 55-393 (720)
137 KOG2048 WD40 repeat protein [G 99.9 3.2E-23 6.8E-28 176.7 27.9 288 16-341 21-319 (691)
138 KOG2919 Guanine nucleotide-bin 99.9 1.9E-23 4.2E-28 162.9 23.7 284 23-335 52-363 (406)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.2E-23 9.2E-28 175.5 28.4 276 5-322 16-300 (300)
140 KOG4227 WD40 repeat protein [G 99.9 1.5E-23 3.2E-28 167.8 21.5 305 11-341 47-387 (609)
141 KOG0646 WD40 repeat protein [G 99.9 1.4E-23 3E-28 171.3 21.7 262 35-324 53-331 (476)
142 KOG0270 WD40 repeat-containing 99.9 5E-24 1.1E-28 172.8 18.0 212 16-240 239-453 (463)
143 KOG0302 Ribosome Assembly prot 99.9 1.3E-23 2.8E-28 167.0 18.1 217 9-233 200-435 (440)
144 KOG0267 Microtubule severing p 99.9 5E-25 1.1E-29 188.8 9.2 208 3-228 53-260 (825)
145 KOG0267 Microtubule severing p 99.9 1.4E-24 3.1E-29 186.1 10.0 226 15-267 23-249 (825)
146 KOG0303 Actin-binding protein 99.9 5.9E-23 1.3E-27 164.3 17.7 212 15-239 76-297 (472)
147 KOG4283 Transcription-coupled 99.9 2E-21 4.3E-26 149.9 24.6 285 61-365 40-347 (397)
148 KOG0321 WD40 repeat-containing 99.9 5.5E-22 1.2E-26 168.1 22.1 267 13-300 93-393 (720)
149 KOG1034 Transcriptional repres 99.9 2.9E-22 6.4E-27 156.6 18.8 302 14-341 32-383 (385)
150 KOG2048 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 167.4 23.8 252 63-344 24-278 (691)
151 KOG1273 WD40 repeat protein [G 99.9 1E-21 2.2E-26 152.8 21.1 252 67-353 26-292 (405)
152 KOG2096 WD40 repeat protein [G 99.9 3.4E-21 7.4E-26 150.2 23.3 272 60-358 82-378 (420)
153 KOG1063 RNA polymerase II elon 99.9 3.2E-21 6.9E-26 165.0 24.9 303 11-341 45-391 (764)
154 KOG0301 Phospholipase A2-activ 99.9 1.3E-21 2.8E-26 167.4 22.4 259 59-365 9-282 (745)
155 KOG1538 Uncharacterized conser 99.9 4.3E-22 9.2E-27 169.9 18.9 275 22-343 14-295 (1081)
156 KOG2055 WD40 repeat protein [G 99.9 1.6E-21 3.5E-26 159.2 20.9 266 63-363 212-492 (514)
157 KOG2445 Nuclear pore complex c 99.9 1E-20 2.2E-25 146.9 24.2 257 59-341 8-318 (361)
158 KOG1334 WD40 repeat protein [G 99.9 5.4E-22 1.2E-26 163.0 18.0 311 12-344 134-469 (559)
159 KOG0307 Vesicle coat complex C 99.9 1.2E-22 2.7E-27 183.1 15.1 293 24-344 10-330 (1049)
160 KOG4378 Nuclear protein COP1 [ 99.9 8.7E-22 1.9E-26 162.2 18.6 267 22-324 36-305 (673)
161 KOG4328 WD40 protein [Function 99.9 2.3E-21 5.1E-26 158.0 20.9 266 61-354 183-463 (498)
162 KOG1007 WD repeat protein TSSC 99.9 3.2E-21 6.9E-26 148.3 20.1 212 14-236 57-289 (370)
163 KOG1034 Transcriptional repres 99.9 5.8E-22 1.3E-26 155.0 16.1 226 7-236 122-383 (385)
164 KOG1009 Chromatin assembly com 99.9 1.9E-21 4.2E-26 156.2 18.0 311 20-346 13-377 (434)
165 KOG0307 Vesicle coat complex C 99.9 1.6E-22 3.5E-27 182.4 12.1 218 11-239 107-330 (1049)
166 KOG0322 G-protein beta subunit 99.9 6.2E-21 1.3E-25 144.9 17.9 297 10-340 4-322 (323)
167 KOG2919 Guanine nucleotide-bin 99.9 4.4E-20 9.6E-25 144.3 21.6 264 66-353 51-340 (406)
168 PRK11028 6-phosphogluconolacto 99.9 3.7E-19 8E-24 152.6 29.5 282 35-341 4-304 (330)
169 KOG1240 Protein kinase contain 99.9 5.8E-20 1.3E-24 166.9 25.3 228 8-240 1036-1277(1431)
170 KOG1517 Guanine nucleotide bin 99.9 6.9E-20 1.5E-24 164.1 25.0 303 19-344 1063-1384(1387)
171 KOG4378 Nuclear protein COP1 [ 99.9 6.4E-21 1.4E-25 157.2 16.8 200 24-239 83-283 (673)
172 KOG1587 Cytoplasmic dynein int 99.9 1.2E-19 2.6E-24 159.0 25.4 274 5-298 227-516 (555)
173 KOG1587 Cytoplasmic dynein int 99.9 3.6E-19 7.8E-24 156.1 28.1 274 43-343 222-518 (555)
174 KOG0649 WD40 repeat protein [G 99.9 1.6E-19 3.4E-24 135.8 21.0 208 21-240 11-239 (325)
175 KOG0642 Cell-cycle nuclear pro 99.9 1.3E-20 2.9E-25 157.7 16.0 264 15-352 289-572 (577)
176 KOG0303 Actin-binding protein 99.9 2.4E-20 5.2E-25 149.5 16.0 215 61-344 78-297 (472)
177 KOG0650 WD40 repeat nucleolar 99.9 2.2E-19 4.7E-24 151.5 21.7 244 59-339 395-678 (733)
178 KOG0644 Uncharacterized conser 99.9 3.4E-21 7.3E-26 168.3 10.3 292 7-346 177-473 (1113)
179 KOG0290 Conserved WD40 repeat- 99.8 2.3E-19 4.9E-24 138.4 18.5 208 18-238 94-320 (364)
180 KOG1310 WD40 repeat protein [G 99.8 6.6E-20 1.4E-24 153.2 16.7 224 14-240 44-307 (758)
181 KOG1963 WD40 repeat protein [G 99.8 1.8E-18 4E-23 152.4 26.2 299 18-343 203-540 (792)
182 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-17 3.5E-22 148.7 32.7 299 5-342 139-443 (466)
183 KOG1963 WD40 repeat protein [G 99.8 1.2E-17 2.7E-22 147.2 29.0 313 5-341 42-487 (792)
184 KOG1007 WD repeat protein TSSC 99.8 5.8E-19 1.3E-23 136.0 18.1 209 14-235 116-360 (370)
185 KOG0290 Conserved WD40 repeat- 99.8 9E-19 2E-23 135.1 18.1 206 18-232 148-361 (364)
186 KOG2110 Uncharacterized conser 99.8 5.8E-18 1.3E-22 135.0 22.9 241 20-344 5-251 (391)
187 KOG1538 Uncharacterized conser 99.8 4.1E-19 9E-24 151.9 17.0 254 5-300 38-295 (1081)
188 KOG0771 Prolactin regulatory e 99.8 2.9E-19 6.2E-24 144.8 14.8 201 24-237 148-355 (398)
189 KOG2110 Uncharacterized conser 99.8 2.4E-17 5.2E-22 131.5 25.0 199 22-239 48-251 (391)
190 KOG1334 WD40 repeat protein [G 99.8 9.5E-19 2.1E-23 144.2 15.6 277 61-358 139-441 (559)
191 COG2319 FOG: WD40 repeat [Gene 99.8 4.3E-16 9.3E-21 139.5 33.3 297 15-349 60-367 (466)
192 KOG1517 Guanine nucleotide bin 99.8 2.3E-17 5E-22 148.2 22.1 272 5-301 1091-1384(1387)
193 KOG1240 Protein kinase contain 99.8 5.4E-17 1.2E-21 148.0 23.5 275 48-346 1034-1339(1431)
194 KOG1188 WD40 repeat protein [G 99.8 1.5E-17 3.3E-22 131.2 17.4 206 78-309 41-253 (376)
195 KOG4227 WD40 repeat protein [G 99.8 2.1E-17 4.7E-22 132.9 17.5 261 61-342 53-323 (609)
196 PF02239 Cytochrom_D1: Cytochr 99.8 6.5E-16 1.4E-20 132.1 27.4 297 35-354 8-360 (369)
197 KOG1524 WD40 repeat-containing 99.8 4.3E-17 9.2E-22 136.3 19.3 186 14-233 98-283 (737)
198 KOG2139 WD40 repeat protein [G 99.8 4.3E-16 9.3E-21 124.1 23.9 297 21-340 99-430 (445)
199 KOG0642 Cell-cycle nuclear pro 99.8 8.6E-18 1.9E-22 141.0 14.5 218 10-240 334-565 (577)
200 PRK11028 6-phosphogluconolacto 99.8 1.1E-15 2.4E-20 131.2 27.9 260 12-298 27-304 (330)
201 KOG4497 Uncharacterized conser 99.8 2.1E-17 4.5E-22 129.9 14.7 140 25-182 13-153 (447)
202 KOG4497 Uncharacterized conser 99.8 2.1E-16 4.6E-21 124.3 19.9 291 21-348 49-398 (447)
203 KOG1445 Tumor-specific antigen 99.8 8.7E-18 1.9E-22 143.2 12.9 206 20-237 627-845 (1012)
204 KOG1009 Chromatin assembly com 99.8 5.7E-17 1.2E-21 130.8 16.6 223 12-240 57-376 (434)
205 KOG1272 WD40-repeat-containing 99.8 1.4E-17 3E-22 136.6 13.0 199 20-240 129-327 (545)
206 KOG1523 Actin-related protein 99.8 1.9E-16 4.1E-21 124.1 18.2 216 14-239 4-239 (361)
207 KOG2321 WD40 repeat protein [G 99.8 9.7E-16 2.1E-20 129.3 23.4 283 18-339 49-341 (703)
208 KOG1524 WD40 repeat-containing 99.7 1.4E-16 3.1E-21 133.2 17.8 263 18-338 12-283 (737)
209 KOG0644 Uncharacterized conser 99.7 7E-18 1.5E-22 147.9 10.2 252 61-358 187-444 (1113)
210 KOG2111 Uncharacterized conser 99.7 1.6E-15 3.5E-20 118.9 22.0 239 22-342 7-257 (346)
211 KOG0649 WD40 repeat protein [G 99.7 2.5E-15 5.4E-20 113.5 22.1 204 10-236 52-274 (325)
212 PRK01742 tolB translocation pr 99.7 2.6E-16 5.6E-21 139.1 19.9 235 42-323 183-426 (429)
213 KOG3881 Uncharacterized conser 99.7 3.1E-16 6.7E-21 126.1 18.2 215 17-240 102-324 (412)
214 KOG1523 Actin-related protein 99.7 2E-15 4.4E-20 118.4 20.1 244 63-332 9-269 (361)
215 KOG3881 Uncharacterized conser 99.7 1.2E-15 2.5E-20 122.9 19.3 267 63-354 54-333 (412)
216 KOG1354 Serine/threonine prote 99.7 2E-15 4.3E-20 119.6 19.6 267 19-300 24-361 (433)
217 KOG1310 WD40 repeat protein [G 99.7 4.3E-16 9.3E-21 130.7 15.3 167 61-236 47-231 (758)
218 KOG0322 G-protein beta subunit 99.7 7.5E-16 1.6E-20 117.6 15.0 226 5-235 40-322 (323)
219 PRK01742 tolB translocation pr 99.7 3.8E-15 8.2E-20 131.8 20.7 200 12-236 195-401 (429)
220 KOG2139 WD40 repeat protein [G 99.7 3.9E-14 8.6E-19 113.1 23.5 202 19-237 139-384 (445)
221 KOG2394 WD40 protein DMR-N9 [G 99.7 5.5E-15 1.2E-19 123.8 17.8 174 125-321 182-383 (636)
222 KOG2111 Uncharacterized conser 99.7 4E-14 8.6E-19 111.2 21.2 182 43-239 75-259 (346)
223 PRK03629 tolB translocation pr 99.7 1E-13 2.2E-18 122.4 26.5 236 44-322 180-427 (429)
224 KOG0771 Prolactin regulatory e 99.7 8.4E-15 1.8E-19 119.2 17.2 202 120-342 148-355 (398)
225 KOG2315 Predicted translation 99.7 2.2E-13 4.8E-18 115.0 25.0 284 20-348 34-396 (566)
226 PRK03629 tolB translocation pr 99.6 1.5E-13 3.1E-18 121.4 24.9 203 13-237 191-407 (429)
227 KOG2394 WD40 protein DMR-N9 [G 99.6 1.2E-14 2.7E-19 121.8 15.9 138 20-171 219-384 (636)
228 PRK04922 tolB translocation pr 99.6 1.9E-13 4.1E-18 121.3 23.5 237 43-322 184-432 (433)
229 KOG1272 WD40-repeat-containing 99.6 7.9E-16 1.7E-20 126.5 7.5 201 119-351 132-333 (545)
230 PRK05137 tolB translocation pr 99.6 2.7E-13 5.9E-18 120.4 24.3 206 11-239 192-415 (435)
231 PF10282 Lactonase: Lactonase, 99.6 2.5E-12 5.5E-17 110.4 28.4 289 36-346 2-329 (345)
232 PRK02889 tolB translocation pr 99.6 5.3E-13 1.1E-17 118.0 22.9 239 43-323 176-425 (427)
233 PRK04922 tolB translocation pr 99.6 5.9E-13 1.3E-17 118.2 22.6 204 11-237 194-412 (433)
234 PRK02889 tolB translocation pr 99.6 4.3E-13 9.3E-18 118.6 21.4 203 10-235 185-402 (427)
235 PF02239 Cytochrom_D1: Cytochr 99.6 2.6E-12 5.6E-17 110.1 24.9 274 8-307 24-356 (369)
236 PRK05137 tolB translocation pr 99.6 3.3E-12 7.1E-17 113.6 26.4 237 43-323 182-433 (435)
237 KOG1409 Uncharacterized conser 99.6 4.6E-13 9.9E-18 106.4 18.2 226 2-241 6-275 (404)
238 PF08662 eIF2A: Eukaryotic tra 99.6 5.2E-13 1.1E-17 103.9 18.6 149 68-236 9-179 (194)
239 PF08662 eIF2A: Eukaryotic tra 99.6 5.8E-13 1.3E-17 103.7 18.8 150 24-192 9-179 (194)
240 KOG2314 Translation initiation 99.6 5.2E-12 1.1E-16 106.8 23.7 284 23-342 213-574 (698)
241 COG2706 3-carboxymuconate cycl 99.5 7.8E-11 1.7E-15 95.0 28.8 282 42-344 15-326 (346)
242 KOG0974 WD-repeat protein WDR6 99.5 5.2E-13 1.1E-17 120.7 17.8 278 19-343 6-290 (967)
243 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.2E-10 2.5E-15 97.7 28.7 275 43-349 27-338 (352)
244 KOG0280 Uncharacterized conser 99.5 1.3E-11 2.7E-16 96.3 20.1 275 42-344 45-336 (339)
245 TIGR02800 propeller_TolB tol-p 99.5 1.1E-11 2.3E-16 110.4 22.9 193 13-228 182-386 (417)
246 COG5354 Uncharacterized protei 99.5 2.1E-11 4.5E-16 102.2 22.5 299 7-344 19-398 (561)
247 KOG2321 WD40 repeat protein [G 99.5 2E-12 4.4E-17 109.6 16.3 194 36-236 148-343 (703)
248 PRK04792 tolB translocation pr 99.5 3.8E-11 8.3E-16 106.6 24.9 236 44-322 199-446 (448)
249 TIGR02800 propeller_TolB tol-p 99.5 4.6E-11 1E-15 106.4 25.6 176 43-239 170-357 (417)
250 KOG1354 Serine/threonine prote 99.5 4.7E-12 1E-16 100.8 16.8 265 63-344 24-362 (433)
251 PRK01029 tolB translocation pr 99.5 6.8E-11 1.5E-15 104.2 26.1 244 43-324 165-426 (428)
252 PRK00178 tolB translocation pr 99.5 8.3E-11 1.8E-15 104.9 26.3 237 44-323 180-428 (430)
253 PRK01029 tolB translocation pr 99.5 8.5E-11 1.8E-15 103.6 24.8 210 14-240 178-407 (428)
254 KOG1064 RAVE (regulator of V-A 99.4 1.6E-12 3.5E-17 123.7 14.0 199 15-242 2203-2404(2439)
255 PRK00178 tolB translocation pr 99.4 9.3E-11 2E-15 104.6 24.2 203 12-236 190-406 (430)
256 KOG1832 HIV-1 Vpr-binding prot 99.4 1E-13 2.2E-18 123.3 4.9 203 10-242 1091-1297(1516)
257 KOG1064 RAVE (regulator of V-A 99.4 2.9E-12 6.2E-17 122.1 14.1 200 63-309 2207-2409(2439)
258 PRK04792 tolB translocation pr 99.4 1.4E-10 3E-15 103.0 24.1 201 14-236 211-425 (448)
259 TIGR03300 assembly_YfgL outer 99.4 3.2E-10 6.8E-15 99.4 25.1 274 35-353 67-350 (377)
260 PF10282 Lactonase: Lactonase, 99.4 8.3E-10 1.8E-14 95.0 26.8 264 20-304 36-330 (345)
261 KOG4532 WD40-like repeat conta 99.4 1.5E-10 3.2E-15 89.4 19.4 207 24-240 71-286 (344)
262 KOG0882 Cyclophilin-related pe 99.4 4.9E-11 1.1E-15 98.5 17.2 314 18-378 7-378 (558)
263 KOG2041 WD40 repeat protein [G 99.4 9E-11 2E-15 102.6 19.3 290 21-339 15-335 (1189)
264 KOG4714 Nucleoporin [Nuclear s 99.4 6E-11 1.3E-15 91.0 14.8 210 12-237 27-255 (319)
265 KOG1912 WD40 repeat protein [G 99.3 2.6E-10 5.6E-15 100.7 20.4 215 10-237 45-305 (1062)
266 PLN02919 haloacid dehalogenase 99.3 2.6E-09 5.6E-14 103.9 29.1 213 24-240 571-837 (1057)
267 KOG2315 Predicted translation 99.3 8E-10 1.7E-14 94.0 21.3 242 24-305 129-396 (566)
268 KOG0974 WD-repeat protein WDR6 99.3 1.3E-10 2.9E-15 105.5 17.7 191 27-239 94-291 (967)
269 COG2706 3-carboxymuconate cycl 99.3 3.5E-08 7.6E-13 80.0 29.3 272 16-305 35-330 (346)
270 KOG4190 Uncharacterized conser 99.3 1.5E-11 3.3E-16 104.3 10.7 216 11-240 726-952 (1034)
271 KOG4547 WD40 repeat-containing 99.3 5.5E-11 1.2E-15 101.5 13.9 193 126-342 3-221 (541)
272 COG4946 Uncharacterized protei 99.3 2E-08 4.3E-13 84.1 26.6 170 34-225 333-507 (668)
273 KOG0280 Uncharacterized conser 99.3 1.7E-09 3.8E-14 84.7 19.1 206 21-240 70-288 (339)
274 PF04762 IKI3: IKI3 family; I 99.3 3.2E-08 6.9E-13 94.7 31.5 308 19-343 74-458 (928)
275 COG5170 CDC55 Serine/threonine 99.3 2.6E-10 5.7E-15 89.9 14.2 218 19-239 25-312 (460)
276 TIGR03300 assembly_YfgL outer 99.3 1.3E-08 2.9E-13 89.2 26.7 264 35-338 107-376 (377)
277 KOG4547 WD40 repeat-containing 99.3 8.6E-10 1.9E-14 94.4 18.3 189 34-237 6-221 (541)
278 KOG4190 Uncharacterized conser 99.2 8.7E-11 1.9E-15 99.8 11.2 239 61-339 732-986 (1034)
279 TIGR02658 TTQ_MADH_Hv methylam 99.2 5E-08 1.1E-12 82.1 26.1 245 28-306 53-338 (352)
280 PLN02919 haloacid dehalogenase 99.2 1.4E-08 3.1E-13 98.8 25.3 217 22-240 625-892 (1057)
281 PF04762 IKI3: IKI3 family; I 99.1 1.6E-07 3.5E-12 90.0 29.6 214 14-239 204-459 (928)
282 KOG1409 Uncharacterized conser 99.1 6.4E-09 1.4E-13 83.3 16.8 168 19-192 67-270 (404)
283 COG5354 Uncharacterized protei 99.1 3.9E-08 8.5E-13 83.0 22.1 258 4-300 112-397 (561)
284 PF15492 Nbas_N: Neuroblastoma 99.1 1.4E-07 3E-12 74.3 23.3 243 70-355 3-273 (282)
285 KOG0309 Conserved WD40 repeat- 99.1 4.7E-10 1E-14 98.5 10.5 183 23-217 70-256 (1081)
286 KOG2314 Translation initiation 99.1 9.6E-08 2.1E-12 81.6 22.9 247 22-303 251-577 (698)
287 KOG3914 WD repeat protein WDR4 99.1 3.3E-09 7.2E-14 86.7 13.6 164 67-242 65-229 (390)
288 PRK04043 tolB translocation pr 99.1 9.7E-08 2.1E-12 83.8 23.6 192 22-236 189-400 (419)
289 KOG2041 WD40 repeat protein [G 99.1 2.2E-08 4.7E-13 88.2 18.7 200 13-227 64-279 (1189)
290 KOG4532 WD40-like repeat conta 99.0 1.4E-07 3E-12 73.4 19.6 270 41-344 50-334 (344)
291 PF00400 WD40: WD domain, G-be 99.0 7.4E-10 1.6E-14 61.6 5.5 38 11-49 2-39 (39)
292 KOG4714 Nucleoporin [Nuclear s 99.0 4.1E-09 8.9E-14 81.2 11.1 165 14-192 83-254 (319)
293 PF15492 Nbas_N: Neuroblastoma 99.0 2.1E-07 4.5E-12 73.4 20.7 195 22-240 45-263 (282)
294 PRK11138 outer membrane biogen 99.0 5.6E-07 1.2E-11 79.4 25.9 274 35-351 71-363 (394)
295 KOG1645 RING-finger-containing 99.0 6.7E-08 1.4E-12 79.3 18.1 272 45-342 175-462 (463)
296 KOG3914 WD repeat protein WDR4 99.0 1.3E-08 2.8E-13 83.4 14.0 167 119-307 65-232 (390)
297 COG4946 Uncharacterized protei 99.0 1.7E-07 3.6E-12 78.8 20.0 193 29-242 275-483 (668)
298 PRK04043 tolB translocation pr 99.0 1.6E-06 3.4E-11 76.3 27.1 213 43-298 169-400 (419)
299 COG5170 CDC55 Serine/threonine 99.0 1.1E-08 2.4E-13 81.0 12.1 240 63-353 25-322 (460)
300 PF13360 PQQ_2: PQQ-like domai 99.0 2.2E-07 4.8E-12 76.0 19.8 223 42-303 2-235 (238)
301 KOG0309 Conserved WD40 repeat- 98.9 4.3E-09 9.3E-14 92.7 8.8 212 14-237 108-340 (1081)
302 KOG2695 WD40 repeat protein [G 98.9 5.1E-09 1.1E-13 84.0 8.5 163 71-244 218-384 (425)
303 KOG1645 RING-finger-containing 98.9 1.7E-07 3.6E-12 77.1 16.6 87 11-99 184-270 (463)
304 KOG2695 WD40 repeat protein [G 98.9 7.5E-09 1.6E-13 83.1 8.2 158 132-354 228-389 (425)
305 PRK11138 outer membrane biogen 98.9 2.9E-06 6.3E-11 74.9 25.4 265 35-340 122-393 (394)
306 PF08450 SGL: SMP-30/Gluconola 98.9 1.3E-05 2.8E-10 65.9 27.6 199 25-240 4-216 (246)
307 KOG2066 Vacuolar assembly/sort 98.9 7.9E-08 1.7E-12 85.8 15.0 187 20-237 39-234 (846)
308 KOG1008 Uncharacterized conser 98.9 1.5E-09 3.4E-14 93.9 3.3 205 20-237 56-276 (783)
309 KOG1912 WD40 repeat protein [G 98.9 2E-07 4.3E-12 83.0 16.2 224 13-240 102-368 (1062)
310 PF13360 PQQ_2: PQQ-like domai 98.8 4.4E-07 9.4E-12 74.2 17.6 231 86-348 2-237 (238)
311 PF07433 DUF1513: Protein of u 98.8 9.7E-06 2.1E-10 66.2 24.1 245 66-340 6-284 (305)
312 PF08450 SGL: SMP-30/Gluconola 98.8 4.5E-06 9.7E-11 68.5 21.3 222 69-327 4-240 (246)
313 KOG2066 Vacuolar assembly/sort 98.8 3.4E-07 7.4E-12 81.9 15.0 192 63-298 38-233 (846)
314 PF06433 Me-amine-dh_H: Methyl 98.8 2.6E-06 5.7E-11 70.2 19.0 286 43-351 17-330 (342)
315 KOG3621 WD40 repeat-containing 98.8 4.6E-06 9.9E-11 73.9 21.3 156 19-181 32-188 (726)
316 PF07433 DUF1513: Protein of u 98.8 1.9E-05 4.2E-10 64.4 23.5 206 23-242 7-253 (305)
317 KOG0882 Cyclophilin-related pe 98.7 1.6E-07 3.5E-12 78.2 11.5 233 63-354 8-244 (558)
318 KOG1832 HIV-1 Vpr-binding prot 98.7 3.2E-08 7E-13 89.2 7.6 201 117-354 1102-1304(1516)
319 KOG4649 PQQ (pyrrolo-quinoline 98.7 5.4E-05 1.2E-09 59.2 23.6 148 27-191 17-164 (354)
320 cd00216 PQQ_DH Dehydrogenases 98.7 1.3E-05 2.9E-10 72.4 23.5 296 35-354 63-437 (488)
321 PF00400 WD40: WD domain, G-be 98.7 1.1E-07 2.3E-12 52.7 6.2 37 55-93 3-39 (39)
322 KOG1920 IkappaB kinase complex 98.7 2.1E-05 4.6E-10 74.2 24.2 210 20-239 68-325 (1265)
323 PF11768 DUF3312: Protein of u 98.7 4.7E-06 1E-10 72.6 18.4 115 119-238 208-331 (545)
324 KOG1275 PAB-dependent poly(A) 98.6 9.1E-07 2E-11 80.4 13.7 152 22-191 179-341 (1118)
325 PF14583 Pectate_lyase22: Olig 98.6 0.00018 3.8E-09 60.9 25.6 198 27-239 42-275 (386)
326 KOG1275 PAB-dependent poly(A) 98.6 2.1E-06 4.5E-11 78.1 15.1 183 35-236 149-342 (1118)
327 PRK02888 nitrous-oxide reducta 98.6 1.8E-05 3.8E-10 70.9 20.5 233 31-299 140-405 (635)
328 KOG1920 IkappaB kinase complex 98.6 2.6E-05 5.6E-10 73.6 21.8 201 118-343 70-324 (1265)
329 cd00216 PQQ_DH Dehydrogenases 98.5 7.6E-05 1.7E-09 67.6 23.8 267 35-328 112-453 (488)
330 KOG2114 Vacuolar assembly/sort 98.5 5.7E-05 1.2E-09 68.8 22.2 205 22-239 27-246 (933)
331 PF06977 SdiA-regulated: SdiA- 98.5 9.2E-05 2E-09 59.6 21.1 212 14-233 15-247 (248)
332 PF11768 DUF3312: Protein of u 98.5 0.00031 6.7E-09 61.7 25.4 118 163-302 207-333 (545)
333 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.5 0.0009 1.9E-08 61.1 30.2 305 35-354 71-503 (527)
334 PF00780 CNH: CNH domain; Int 98.4 0.00018 3.9E-09 60.2 22.3 242 34-310 8-267 (275)
335 PF00780 CNH: CNH domain; Int 98.4 0.00065 1.4E-08 56.9 24.6 248 77-359 7-273 (275)
336 KOG3617 WD40 and TPR repeat-co 98.4 1.1E-05 2.3E-10 73.3 13.5 70 23-95 62-131 (1416)
337 KOG2114 Vacuolar assembly/sort 98.3 0.00013 2.7E-09 66.7 18.9 219 123-362 30-265 (933)
338 KOG3621 WD40 repeat-containing 98.3 2.5E-05 5.5E-10 69.4 14.3 116 119-237 36-155 (726)
339 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0022 4.7E-08 56.7 28.9 255 44-353 62-326 (410)
340 COG3391 Uncharacterized conser 98.3 0.00052 1.1E-08 60.1 22.2 203 23-240 76-287 (381)
341 KOG3617 WD40 and TPR repeat-co 98.3 2E-05 4.4E-10 71.6 13.2 109 68-192 19-131 (1416)
342 PF06977 SdiA-regulated: SdiA- 98.3 0.0012 2.6E-08 53.3 22.1 165 61-235 18-200 (248)
343 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0015 3.2E-08 51.5 20.2 146 73-236 19-165 (354)
344 COG0823 TolB Periplasmic compo 98.2 0.00014 3E-09 63.9 16.7 195 13-227 185-390 (425)
345 PRK02888 nitrous-oxide reducta 98.2 0.00013 2.8E-09 65.5 16.3 153 27-193 199-405 (635)
346 KOG1008 Uncharacterized conser 98.2 1E-06 2.3E-11 77.0 3.2 166 15-193 97-276 (783)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0039 8.4E-08 57.0 25.7 157 35-196 122-337 (527)
348 PF03178 CPSF_A: CPSF A subuni 98.1 0.00081 1.7E-08 57.6 19.7 185 34-233 43-262 (321)
349 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0012 2.6E-08 57.4 20.7 277 29-330 1-345 (353)
350 PF08553 VID27: VID27 cytoplas 98.1 0.00053 1.2E-08 64.1 19.2 147 77-236 493-647 (794)
351 COG3204 Uncharacterized protei 98.0 0.0024 5.3E-08 51.4 18.7 173 16-192 81-263 (316)
352 smart00320 WD40 WD40 repeats. 98.0 1.6E-05 3.6E-10 43.4 4.9 38 11-49 3-40 (40)
353 PF08596 Lgl_C: Lethal giant l 97.9 0.0034 7.5E-08 54.7 19.9 211 22-239 3-293 (395)
354 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0019 4.1E-08 44.1 14.2 101 23-141 2-109 (111)
355 PF08596 Lgl_C: Lethal giant l 97.9 0.00096 2.1E-08 58.1 15.3 215 12-235 78-334 (395)
356 PF02897 Peptidase_S9_N: Proly 97.9 0.0076 1.6E-07 53.9 21.6 251 66-346 125-409 (414)
357 COG3391 Uncharacterized conser 97.9 0.016 3.5E-07 50.8 27.4 274 45-352 13-294 (381)
358 PF02897 Peptidase_S9_N: Proly 97.9 0.019 4.1E-07 51.4 28.3 202 22-236 125-357 (414)
359 PF08553 VID27: VID27 cytoplas 97.8 0.0012 2.5E-08 61.9 16.1 142 40-191 501-646 (794)
360 KOG4640 Anaphase-promoting com 97.8 0.00011 2.3E-09 64.8 8.7 95 64-171 20-115 (665)
361 KOG2444 WD40 repeat protein [G 97.8 4.2E-05 9.2E-10 58.7 5.2 142 177-341 33-177 (238)
362 KOG4640 Anaphase-promoting com 97.8 0.00017 3.6E-09 63.6 9.4 81 19-103 19-100 (665)
363 PF03178 CPSF_A: CPSF A subuni 97.8 0.0068 1.5E-07 52.0 19.3 179 44-237 3-203 (321)
364 KOG2395 Protein involved in va 97.8 0.0024 5.2E-08 55.6 15.4 143 79-236 348-500 (644)
365 PF04053 Coatomer_WDAD: Coatom 97.7 0.007 1.5E-07 53.6 18.5 143 64-237 32-174 (443)
366 COG0823 TolB Periplasmic compo 97.7 0.0036 7.9E-08 55.2 16.0 158 63-239 191-361 (425)
367 PRK13616 lipoprotein LpqB; Pro 97.7 0.015 3.2E-07 53.8 20.4 199 21-230 350-562 (591)
368 PF06433 Me-amine-dh_H: Methyl 97.6 0.0085 1.9E-07 50.1 16.2 204 25-242 99-326 (342)
369 COG3204 Uncharacterized protei 97.5 0.018 3.9E-07 46.6 16.5 165 62-236 83-263 (316)
370 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.05 1.1E-06 47.4 20.7 205 20-236 42-315 (353)
371 PF04053 Coatomer_WDAD: Coatom 97.5 0.014 2.9E-07 51.9 17.2 184 15-232 27-219 (443)
372 KOG2280 Vacuolar assembly/sort 97.4 0.09 1.9E-06 48.4 20.6 227 19-267 42-270 (829)
373 KOG3630 Nuclear pore complex, 97.4 0.0083 1.8E-07 57.3 14.8 116 119-236 103-228 (1405)
374 smart00320 WD40 WD40 repeats. 97.4 0.00062 1.3E-08 36.7 5.1 32 61-93 9-40 (40)
375 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.023 4.9E-07 39.0 14.0 102 67-187 2-109 (111)
376 KOG2444 WD40 repeat protein [G 97.3 0.00058 1.3E-08 52.7 5.7 142 79-237 32-178 (238)
377 COG3386 Gluconolactonase [Carb 97.2 0.094 2E-06 44.2 19.5 225 70-329 30-272 (307)
378 COG3386 Gluconolactonase [Carb 97.2 0.096 2.1E-06 44.2 20.1 201 25-241 29-247 (307)
379 KOG4441 Proteins containing BT 97.2 0.098 2.1E-06 48.5 19.8 189 34-239 286-502 (571)
380 COG3490 Uncharacterized protei 97.2 0.042 9.1E-07 44.3 14.8 196 27-235 120-347 (366)
381 KOG2079 Vacuolar assembly/sort 97.2 0.013 2.8E-07 55.7 13.4 100 34-140 100-199 (1206)
382 KOG2079 Vacuolar assembly/sort 97.1 0.0034 7.4E-08 59.3 9.1 105 127-236 98-203 (1206)
383 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0033 7.2E-08 35.7 5.7 32 205-236 10-41 (47)
384 KOG4441 Proteins containing BT 97.1 0.12 2.7E-06 47.8 18.9 149 77-240 285-456 (571)
385 PF04841 Vps16_N: Vps16, N-ter 97.0 0.22 4.7E-06 44.3 22.4 180 20-218 80-271 (410)
386 KOG1897 Damage-specific DNA bi 97.0 0.34 7.4E-06 46.3 27.8 105 36-145 502-612 (1096)
387 PHA02713 hypothetical protein; 97.0 0.036 7.7E-07 51.4 15.1 188 34-239 305-536 (557)
388 PF05694 SBP56: 56kDa selenium 97.0 0.13 2.7E-06 44.8 16.7 190 26-225 135-392 (461)
389 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0043 9.2E-08 35.3 5.5 35 63-99 10-44 (47)
390 PF15390 DUF4613: Domain of un 97.0 0.27 5.8E-06 44.2 22.7 153 18-182 54-221 (671)
391 PF05096 Glu_cyclase_2: Glutam 96.9 0.15 3.3E-06 41.3 22.0 185 23-225 47-249 (264)
392 PHA02713 hypothetical protein; 96.9 0.075 1.6E-06 49.3 16.4 53 291-347 481-539 (557)
393 COG3490 Uncharacterized protei 96.9 0.18 3.8E-06 40.9 23.1 150 67-226 70-245 (366)
394 TIGR03118 PEPCTERM_chp_1 conse 96.8 0.21 4.6E-06 41.1 20.0 219 119-353 25-291 (336)
395 KOG1916 Nuclear protein, conta 96.8 0.00024 5.3E-09 65.3 -0.8 101 44-147 112-214 (1283)
396 TIGR03074 PQQ_membr_DH membran 96.8 0.55 1.2E-05 45.1 21.7 75 77-152 194-284 (764)
397 PF15390 DUF4613: Domain of un 96.7 0.077 1.7E-06 47.5 13.7 153 65-236 20-186 (671)
398 PF10647 Gmad1: Lipoprotein Lp 96.7 0.28 6E-06 40.4 18.0 149 66-228 25-187 (253)
399 PF05096 Glu_cyclase_2: Glutam 96.6 0.3 6.4E-06 39.7 20.4 122 63-201 43-166 (264)
400 KOG4499 Ca2+-binding protein R 96.6 0.13 2.8E-06 40.4 12.6 46 319-364 218-264 (310)
401 PF10647 Gmad1: Lipoprotein Lp 96.6 0.33 7.1E-06 39.9 21.0 153 22-184 25-187 (253)
402 PF14583 Pectate_lyase22: Olig 96.6 0.43 9.2E-06 41.1 19.1 186 25-227 85-303 (386)
403 PF14870 PSII_BNR: Photosynthe 96.6 0.38 8.1E-06 40.4 18.5 159 18-189 142-301 (302)
404 KOG2395 Protein involved in va 96.6 0.075 1.6E-06 46.8 12.4 147 35-192 348-500 (644)
405 PRK13616 lipoprotein LpqB; Pro 96.6 0.22 4.9E-06 46.3 16.5 149 65-235 350-524 (591)
406 PF14870 PSII_BNR: Photosynthe 96.4 0.46 9.9E-06 39.9 21.0 157 62-233 142-301 (302)
407 PF14761 HPS3_N: Hermansky-Pud 96.4 0.25 5.5E-06 38.5 13.4 153 129-297 29-213 (215)
408 COG5276 Uncharacterized conser 96.4 0.41 8.9E-06 39.1 17.5 158 63-237 85-242 (370)
409 PF05694 SBP56: 56kDa selenium 96.4 0.3 6.5E-06 42.6 14.9 154 77-233 87-274 (461)
410 PHA03098 kelch-like protein; P 96.4 0.38 8.2E-06 44.8 17.1 187 34-239 296-514 (534)
411 PF08728 CRT10: CRT10; InterP 96.2 0.85 1.8E-05 42.8 18.0 116 119-235 103-245 (717)
412 TIGR03074 PQQ_membr_DH membran 96.1 1.5 3.3E-05 42.3 21.5 208 35-244 196-485 (764)
413 PF10313 DUF2415: Uncharacteri 96.0 0.038 8.1E-07 30.4 5.2 32 21-52 1-34 (43)
414 KOG3630 Nuclear pore complex, 96.0 0.051 1.1E-06 52.3 9.3 153 15-179 94-260 (1405)
415 PF10168 Nup88: Nuclear pore c 96.0 1.2 2.7E-05 42.5 18.3 76 21-98 85-182 (717)
416 PF10313 DUF2415: Uncharacteri 96.0 0.046 1E-06 30.1 5.3 33 65-97 1-35 (43)
417 KOG4499 Ca2+-binding protein R 95.9 0.51 1.1E-05 37.2 12.8 108 66-179 159-271 (310)
418 PHA02790 Kelch-like protein; P 95.8 1 2.2E-05 41.2 16.6 184 34-238 273-472 (480)
419 PF08728 CRT10: CRT10; InterP 95.7 0.83 1.8E-05 42.9 15.3 157 34-191 50-245 (717)
420 PRK10115 protease 2; Provision 95.6 2.3 4.9E-05 40.9 24.3 200 22-236 128-344 (686)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 95.5 1.7 3.7E-05 38.4 25.1 72 277-351 319-408 (415)
422 KOG1897 Damage-specific DNA bi 95.3 3 6.5E-05 40.3 26.6 117 119-237 490-614 (1096)
423 TIGR03118 PEPCTERM_chp_1 conse 95.1 1.6 3.5E-05 36.1 20.7 209 23-242 25-285 (336)
424 COG3823 Glutamine cyclotransfe 95.0 1.3 2.7E-05 34.5 12.9 170 34-224 57-247 (262)
425 COG5167 VID27 Protein involved 94.9 1.2 2.7E-05 39.5 13.1 143 77-236 479-632 (776)
426 TIGR02604 Piru_Ver_Nterm putat 94.9 2 4.4E-05 37.7 15.0 149 21-181 14-202 (367)
427 PF14761 HPS3_N: Hermansky-Pud 94.8 1.5 3.3E-05 34.3 15.0 144 78-235 29-213 (215)
428 KOG1900 Nuclear pore complex, 94.7 1.3 2.9E-05 44.0 14.2 160 63-237 77-273 (1311)
429 PF14727 PHTB1_N: PTHB1 N-term 94.7 2.9 6.4E-05 37.0 16.0 152 74-236 34-204 (418)
430 PF12234 Rav1p_C: RAVE protein 94.6 1.6 3.6E-05 40.6 14.0 104 77-191 41-155 (631)
431 PHA03098 kelch-like protein; P 94.6 2.5 5.5E-05 39.4 15.8 149 77-240 295-468 (534)
432 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 0.89 1.9E-05 40.1 11.2 92 13-106 300-409 (415)
433 PF10168 Nup88: Nuclear pore c 94.3 1.5 3.2E-05 42.0 13.4 75 162-238 85-181 (717)
434 PF12234 Rav1p_C: RAVE protein 94.2 2.5 5.3E-05 39.5 14.3 115 22-146 31-156 (631)
435 KOG1900 Nuclear pore complex, 94.1 1.1 2.4E-05 44.5 12.2 170 19-193 77-273 (1311)
436 PF07995 GSDH: Glucose / Sorbo 93.8 3.9 8.5E-05 35.3 21.4 112 66-183 3-134 (331)
437 KOG1898 Splicing factor 3b, su 93.5 8.4 0.00018 37.9 17.4 73 20-92 582-668 (1205)
438 TIGR02604 Piru_Ver_Nterm putat 93.5 4.4 9.6E-05 35.6 14.3 153 163-331 15-202 (367)
439 PF07676 PD40: WD40-like Beta 93.2 0.54 1.2E-05 25.3 5.4 33 16-48 4-38 (39)
440 PHA02790 Kelch-like protein; P 93.1 5.4 0.00012 36.6 14.7 145 77-239 272-426 (480)
441 PF13449 Phytase-like: Esteras 93.1 5.3 0.00011 34.4 23.3 157 19-179 18-231 (326)
442 PF14727 PHTB1_N: PTHB1 N-term 93.1 6.1 0.00013 35.1 23.9 151 30-192 34-204 (418)
443 PF07569 Hira: TUP1-like enhan 92.9 1.7 3.7E-05 34.8 9.8 72 163-238 14-97 (219)
444 KOG1983 Tomosyn and related SN 92.8 4.2 9.1E-05 40.8 14.2 35 21-56 36-70 (993)
445 KOG4460 Nuclear pore complex, 92.8 5.5 0.00012 35.8 13.2 27 163-190 105-131 (741)
446 PF11715 Nup160: Nucleoporin N 92.5 0.9 1.9E-05 42.4 9.1 69 173-241 157-253 (547)
447 PF14781 BBS2_N: Ciliary BBSom 92.4 3 6.5E-05 30.0 13.0 111 123-237 5-126 (136)
448 KOG2247 WD40 repeat-containing 92.3 0.031 6.7E-07 48.6 -0.6 146 63-228 33-180 (615)
449 PF07569 Hira: TUP1-like enhan 92.3 1.1 2.3E-05 35.9 8.1 67 124-192 18-95 (219)
450 COG3823 Glutamine cyclotransfe 92.3 4.5 9.7E-05 31.6 13.5 104 77-196 56-162 (262)
451 PF14781 BBS2_N: Ciliary BBSom 92.1 3.3 7.2E-05 29.7 11.6 126 211-349 3-133 (136)
452 COG5276 Uncharacterized conser 92.0 6.2 0.00013 32.7 29.2 197 20-237 86-286 (370)
453 TIGR03606 non_repeat_PQQ dehyd 91.6 9.9 0.00021 34.3 15.3 66 9-75 18-89 (454)
454 COG4590 ABC-type uncharacteriz 91.6 1 2.2E-05 39.3 7.4 170 61-240 217-390 (733)
455 PRK13684 Ycf48-like protein; P 91.5 8.6 0.00019 33.3 18.0 158 20-191 172-330 (334)
456 KOG2280 Vacuolar assembly/sort 90.9 15 0.00032 34.9 18.4 158 20-193 83-247 (829)
457 KOG2377 Uncharacterized conser 90.7 12 0.00025 33.3 13.3 117 118-239 68-188 (657)
458 KOG2247 WD40 repeat-containing 90.2 0.057 1.2E-06 47.1 -1.0 149 19-185 33-181 (615)
459 KOG1896 mRNA cleavage and poly 90.2 22 0.00048 35.8 15.3 143 34-191 1047-1212(1366)
460 PLN02193 nitrile-specifier pro 89.9 15 0.00034 33.6 17.4 110 77-195 229-354 (470)
461 TIGR02276 beta_rpt_yvtn 40-res 89.4 2 4.2E-05 23.4 5.3 31 30-60 1-31 (42)
462 PF02333 Phytase: Phytase; In 89.1 15 0.00032 32.2 20.3 205 25-237 58-291 (381)
463 PF07250 Glyoxal_oxid_N: Glyox 89.0 11 0.00024 30.7 11.9 140 89-240 48-201 (243)
464 COG5167 VID27 Protein involved 88.9 17 0.00037 32.8 13.2 144 35-192 482-632 (776)
465 PF11715 Nup160: Nucleoporin N 88.8 3.1 6.7E-05 38.9 9.0 72 34-106 159-259 (547)
466 KOG4460 Nuclear pore complex, 88.7 18 0.00039 32.8 13.7 31 163-193 167-199 (741)
467 PLN02153 epithiospecifier prot 87.6 18 0.00039 31.4 17.7 63 34-99 34-113 (341)
468 PF07995 GSDH: Glucose / Sorbo 87.5 18 0.00039 31.3 21.6 52 22-75 3-59 (331)
469 PF12657 TFIIIC_delta: Transcr 87.2 7.1 0.00015 30.0 8.7 30 118-147 87-122 (173)
470 PF10214 Rrn6: RNA polymerase 86.9 33 0.00072 33.8 21.3 80 160-240 144-236 (765)
471 KOG2377 Uncharacterized conser 86.8 22 0.00048 31.6 19.2 155 25-192 27-185 (657)
472 TIGR03606 non_repeat_PQQ dehyd 86.5 25 0.00053 31.8 17.7 62 64-128 29-90 (454)
473 PF12657 TFIIIC_delta: Transcr 86.4 10 0.00022 29.1 9.2 31 207-237 86-122 (173)
474 TIGR02276 beta_rpt_yvtn 40-res 86.4 3.7 8E-05 22.3 5.3 32 74-106 1-33 (42)
475 COG4257 Vgb Streptogramin lyas 86.4 17 0.00037 29.9 16.7 191 22-237 63-263 (353)
476 PF03022 MRJP: Major royal jel 86.0 20 0.00043 30.3 18.6 202 22-224 2-253 (287)
477 COG5308 NUP170 Nuclear pore co 85.9 15 0.00032 35.7 11.1 73 119-194 184-277 (1263)
478 TIGR03548 mutarot_permut cycli 85.8 22 0.00047 30.6 15.9 65 77-149 124-197 (323)
479 KOG1983 Tomosyn and related SN 85.1 22 0.00048 35.9 12.8 29 119-147 38-66 (993)
480 PLN00033 photosystem II stabil 84.9 28 0.0006 31.0 17.4 109 119-233 283-396 (398)
481 TIGR03548 mutarot_permut cycli 84.7 25 0.00054 30.3 18.6 65 127-194 123-196 (323)
482 PRK13684 Ycf48-like protein; P 84.3 27 0.00058 30.3 21.1 155 64-234 172-329 (334)
483 KOG1898 Splicing factor 3b, su 82.0 58 0.0013 32.6 15.3 135 42-191 911-1047(1205)
484 PF10395 Utp8: Utp8 family; I 81.8 48 0.001 31.5 18.8 170 63-241 128-310 (670)
485 PF13449 Phytase-like: Esteras 80.1 38 0.00083 29.2 16.9 157 64-223 19-231 (326)
486 smart00564 PQQ beta-propeller 79.8 4.2 9.1E-05 20.6 3.4 24 326-349 8-32 (33)
487 COG4257 Vgb Streptogramin lyas 79.7 34 0.00073 28.4 19.9 153 64-239 147-308 (353)
488 PF08801 Nucleoporin_N: Nup133 79.6 47 0.001 29.9 17.0 31 207-237 190-220 (422)
489 PF12341 DUF3639: Protein of u 79.6 5.8 0.00012 19.4 3.7 25 163-190 3-27 (27)
490 PF10214 Rrn6: RNA polymerase 79.3 69 0.0015 31.7 26.6 166 62-238 77-278 (765)
491 KOG2063 Vacuolar assembly/sort 78.8 72 0.0016 31.6 19.1 67 30-99 24-100 (877)
492 COG1520 FOG: WD40-like repeat 78.7 46 0.001 29.3 16.7 68 77-152 68-135 (370)
493 PF02333 Phytase: Phytase; In 78.5 47 0.001 29.3 18.3 155 77-237 68-238 (381)
494 KOG4659 Uncharacterized conser 77.6 93 0.002 32.2 18.9 84 16-101 343-433 (1899)
495 KOG1916 Nuclear protein, conta 77.3 2.2 4.9E-05 40.8 2.9 78 14-95 174-265 (1283)
496 PLN00033 photosystem II stabil 77.3 53 0.0012 29.3 17.7 152 23-189 241-396 (398)
497 PF01011 PQQ: PQQ enzyme repea 77.1 8.7 0.00019 20.5 4.2 29 79-107 2-30 (38)
498 COG1520 FOG: WD40-like repeat 76.2 54 0.0012 28.9 15.9 105 36-151 71-176 (370)
499 PF12768 Rax2: Cortical protei 76.2 46 0.00099 28.0 12.2 55 43-99 16-76 (281)
500 PRK13613 lipoprotein LpqB; Pro 76.0 73 0.0016 30.3 19.7 203 18-233 359-579 (599)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-50 Score=314.77 Aligned_cols=309 Identities=19% Similarity=0.314 Sum_probs=260.0
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeE
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 89 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 89 (396)
..+...+.||.++|.|++|+|+| ..|++|+.|.++|+||+.+..+..+. ++|...|.|++|+|+ +..|++|+.||+|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD-gk~iASG~~dg~I 181 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD-GKKIASGSKDGSI 181 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC-cchhhccccCCeE
Confidence 34567899999999999999999 68999999999999999999888888 899999999999999 9999999999999
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCC-----CCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-----EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
++||..+|+.+..- +.+|..+ |++++|.| ..++|++++.||.++|||+..+.... ....|..+|
T Consensus 182 ~lwdpktg~~~g~~------l~gH~K~--It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~---~lsgHT~~V 250 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRA------LRGHKKW--ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR---TLSGHTASV 250 (480)
T ss_pred EEecCCCCCccccc------ccCcccc--eeEEeecccccCCCccceecccCCCCEEEEEccCceEEE---EeccCccce
Confidence 99999999876432 2344433 99999966 56899999999999999998876543 456677799
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEc-----------CCCC--------------
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFS-----------PSGS-------------- 219 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~-------------- 219 (396)
+|+.|- ...+|++|+.|++|++|+...+.....+. +|...|+.++.+ |.++
T Consensus 251 TCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 251 TCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred EEEEEc--CCceEEecCCCceEEEEEccchhHHHhhc--ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 999997 46899999999999999997644433332 788899998876 3233
Q ss_pred -----------EEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccc
Q 016032 220 -----------KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGA 287 (396)
Q Consensus 220 -----------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 287 (396)
.|++|+.|.++.+|+-...+. | ...+.+|... ..+.|+|+ ++|++ +++
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--p------i~rmtgHq~lVn~V~fSPd---------~r~IA---SaS 386 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--P------ITRMTGHQALVNHVSFSPD---------GRYIA---SAS 386 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEeccccccc--c------hhhhhchhhheeeEEECCC---------ccEEE---Eee
Confidence 499999999999998764331 1 1122233222 36899999 99999 999
Q ss_pred cccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEe
Q 016032 288 ALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 358 (396)
Q Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~ 358 (396)
.|..|++|+..+|+.+.+|.+|- ..++.+ +|+.|.++|++|+ |.+++||++.+.++...+.+|...+.|
T Consensus 387 FDkSVkLW~g~tGk~lasfRGHv-~~VYqv-awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRGHV-AAVYQV-AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred cccceeeeeCCCcchhhhhhhcc-ceeEEE-EeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 99999999999999999999987 888888 9999999999999 999999999999999999999888776
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.8e-49 Score=310.32 Aligned_cols=296 Identities=20% Similarity=0.328 Sum_probs=255.3
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC----CcEE
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN----DGTV 80 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l 80 (396)
|++.+..+..+.++|..-|.|++|+||| ..||+|+.||+|++||..++++....+.+|...|++++|.|-. ..+|
T Consensus 142 WD~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 142 WDLDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred eccCCCCcceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccce
Confidence 8889999999999999999999999999 6899999999999999999998888889999999999997642 5689
Q ss_pred EEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecC
Q 016032 81 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 160 (396)
Q Consensus 81 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 160 (396)
++++.||.|+|||+..+.++..+..+... |+|+.|-.+ .++++|+.|++|++|+...+.....+ ..|.|
T Consensus 221 as~skDg~vrIWd~~~~~~~~~lsgHT~~---------VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~l-kGHah 289 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCVRTLSGHTAS---------VTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCREL-KGHAH 289 (480)
T ss_pred ecccCCCCEEEEEccCceEEEEeccCccc---------eEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhh-cccch
Confidence 99999999999999999999888666554 999999754 57999999999999999987766433 44554
Q ss_pred CccEEEEEec-----------cC------------------------CCCEEEEeeCCCcEEEEecCCCCCCCccccC-C
Q 016032 161 GSKVVGLHCN-----------PI------------------------QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-P 204 (396)
Q Consensus 161 ~~~i~~~~~~-----------~~------------------------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~ 204 (396)
.|+.++++ |. .+..+++|++|.++.+|+.... .+++..+ +
T Consensus 290 --wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--kkpi~rmtg 365 (480)
T KOG0271|consen 290 --WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--KKPITRMTG 365 (480)
T ss_pred --heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--ccchhhhhc
Confidence 78888776 20 2345999999999999997643 2234333 8
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeee
Q 016032 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISEN 283 (396)
Q Consensus 205 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~ 283 (396)
|..-|+.+.||||++++|+++.|..|++||.++|+.+. .|.+|..+ +.++|+.+ .+++.
T Consensus 366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la---------sfRGHv~~VYqvawsaD---------sRLlV-- 425 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA---------SFRGHVAAVYQVAWSAD---------SRLLV-- 425 (480)
T ss_pred hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh---------hhhhccceeEEEEeccC---------ccEEE--
Confidence 99999999999999999999999999999999999865 34445544 68999998 77777
Q ss_pred cccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEc
Q 016032 284 YNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 339 (396)
Q Consensus 284 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~ 339 (396)
+|+.|.++++|++++.++...+.+|. ..+.++ .|+|||..+++|+ |..+++|.
T Consensus 426 -S~SkDsTLKvw~V~tkKl~~DLpGh~-DEVf~v-DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 426 -SGSKDSTLKVWDVRTKKLKQDLPGHA-DEVFAV-DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -EcCCCceEEEEEeeeeeecccCCCCC-ceEEEE-EecCCCceeecCCCceEEEeec
Confidence 89999999999999999999999887 888888 9999999999999 99999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-47 Score=304.58 Aligned_cols=284 Identities=21% Similarity=0.301 Sum_probs=247.5
Q ss_pred ccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecC-CCcEEEEEeCCCeEEEEECC
Q 016032 17 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLE 95 (396)
Q Consensus 17 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~ 95 (396)
-|-+.+|..+.|++++ ..|+||+.+|.++||+..+......+ .+|...|.++.|+|. .+..+++|+.||++++|++.
T Consensus 172 ~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeecCC-CeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 3567899999999999 68999999999999999998777777 899999999999998 46789999999999999999
Q ss_pred CCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCC
Q 016032 96 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 175 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 175 (396)
+...+..+..+... |..++|+|+|++|++++.|.+-++||+++..... ...+|...|.+++|+| +|.
T Consensus 250 ~e~~l~~l~gH~~R---------Vs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL---~QEGHs~~v~~iaf~~-DGS 316 (459)
T KOG0272|consen 250 QETPLQDLEGHLAR---------VSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL---LQEGHSKGVFSIAFQP-DGS 316 (459)
T ss_pred CCcchhhhhcchhh---------heeeeecCCCceeeecccccchhhcccccchhhH---hhcccccccceeEecC-CCc
Confidence 98888888665543 9999999999999999999999999999976553 3456666899999999 999
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccc
Q 016032 176 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 255 (396)
Q Consensus 176 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 255 (396)
++++|+.|..-+|||+|++.....+ -+|..+|.+|+|+|+|..||+|+.|++++|||++....+. .+..
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L--~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---------~ipA 385 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFL--AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---------TIPA 385 (459)
T ss_pred eeeccCccchhheeecccCcEEEEe--cccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---------eccc
Confidence 9999999999999999987664333 3799999999999999999999999999999999776532 2222
Q ss_pred cCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CC
Q 016032 256 HLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SR 333 (396)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~ 333 (396)
|... ..+.|+|.. |.|++ +++.|++++||...++.++.++.+|. +.|.++ ++++++.++++++ |.
T Consensus 386 H~nlVS~Vk~~p~~--------g~fL~---TasyD~t~kiWs~~~~~~~ksLaGHe-~kV~s~-Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQE--------GYFLV---TASYDNTVKIWSTRTWSPLKSLAGHE-GKVISL-DISPDSQAIATSSFDR 452 (459)
T ss_pred ccchhhheEecccC--------CeEEE---EcccCcceeeecCCCcccchhhcCCc-cceEEE-EeccCCceEEEeccCc
Confidence 2222 267888843 88888 89999999999999999999999998 778888 8999999999999 99
Q ss_pred cEEEEc
Q 016032 334 SIFIWR 339 (396)
Q Consensus 334 ~i~iw~ 339 (396)
++++|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999996
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-43 Score=267.73 Aligned_cols=294 Identities=18% Similarity=0.241 Sum_probs=237.6
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc-----eeeeEecCCcccceeEEEEecCCCcEEEEEeC
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-----SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 85 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 85 (396)
....+|++|++.|+.++..+.++.+|++++.|..+.+|++... .....+ .+|...|..+..+++ ++++++++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d-g~~alS~sw 83 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD-GNFALSASW 83 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC-CceEEeccc
Confidence 3456899999999999999998889999999999999999753 334444 789999999999999 999999999
Q ss_pred CCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEE
Q 016032 86 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
|+++++||+.+++....+..+... |.+++|+++.+.+++|+.|.+|.+|+......... ....+...|.
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~d---------Vlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~--~~~~~~~WVs 152 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKD---------VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTI--HEDSHREWVS 152 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCc---------eEEEEecCCCceeecCCCcceeeeeeecccEEEEE--ecCCCcCcEE
Confidence 999999999999998888777655 99999999999999999999999999887443211 1122256899
Q ss_pred EEEeccCC-CCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCC
Q 016032 166 GLHCNPIQ-PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 244 (396)
Q Consensus 166 ~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 244 (396)
|+.|+|.. ..+|++++.|++|++||+++.+....+ ++|++.++.+++||||.++++|+.||.+.+||++.++.+.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~--~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly-- 228 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF--IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY-- 228 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc--ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE--
Confidence 99999932 679999999999999999876553333 4799999999999999999999999999999999888643
Q ss_pred cceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCC-------CCCcce
Q 016032 245 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI-------TTISPV 317 (396)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~-------~~i~~~ 317 (396)
.+........++|+|+. |.. ....+..|+|||+.++.++.++..... .+.+-.
T Consensus 229 -------sl~a~~~v~sl~fspnr----------ywL---~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 229 -------SLEAFDIVNSLCFSPNR----------YWL---CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred -------eccCCCeEeeEEecCCc----------eeE---eeccCCceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 22233333478999963 333 123334499999999999887763221 222222
Q ss_pred eeeccCCcEEEeec-CCcEEEEcCC
Q 016032 318 NKLHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 318 ~~~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
++|+++|..|++|- |+.|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 38999999999999 9999999875
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8e-44 Score=271.72 Aligned_cols=295 Identities=20% Similarity=0.266 Sum_probs=244.0
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEE
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 92 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 92 (396)
.++|+||.+.|.++.|++|. +.|++++.||.+.|||.-+..+...+ +-....|..++|+|. +++++.|+.|+...||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS-GNFVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC-CCeEEecCcCceeEEE
Confidence 37899999999999999998 78999999999999999988777766 557889999999999 9999999999999999
Q ss_pred ECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC
Q 016032 93 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 172 (396)
++.+.......... ..+.+|.. .+.|+.|.+ ...|++++.|.+..+||+++++... .++.|.+.|.++.+.|.
T Consensus 125 ~ls~~d~~g~~~v~-r~l~gHtg--ylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~---~f~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVS-RELAGHTG--YLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ---VFHGHTGDVMSLSLSPS 197 (343)
T ss_pred ecccccccccceee-eeecCccc--eeEEEEEcC-CCceEecCCCceEEEEEcccceEEE---EecCCcccEEEEecCCC
Confidence 99865222111111 11233333 388899987 5679999999999999999987654 56788889999999999
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccc
Q 016032 173 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 252 (396)
+++.+++|+-|+..+|||+|.+...+.+ .+|...|+++.|.|+|.-+++|+.|++.++||++..+.+.... .
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~~c~qtF--~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys------~ 269 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSGQCVQTF--EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS------H 269 (343)
T ss_pred CCCeEEecccccceeeeeccCcceeEee--cccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec------c
Confidence 9999999999999999999986554333 3799999999999999999999999999999999876543221 0
Q ss_pred ccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-
Q 016032 253 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS- 331 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~- 331 (396)
.........++|+.. |+++. .|..|.++.+||.-.++.+..+.+|. ..|.++ ..+|||..|++|+
T Consensus 270 ~~~~~gitSv~FS~S---------GRlLf---agy~d~~c~vWDtlk~e~vg~L~GHe-NRvScl-~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 270 DSIICGITSVAFSKS---------GRLLF---AGYDDFTCNVWDTLKGERVGVLAGHE-NRVSCL-GVSPDGMAVATGSW 335 (343)
T ss_pred CcccCCceeEEEccc---------ccEEE---eeecCCceeEeeccccceEEEeeccC-CeeEEE-EECCCCcEEEecch
Confidence 111111235666665 99999 88999999999999999999998887 889998 8999999999999
Q ss_pred CCcEEEEc
Q 016032 332 SRSIFIWR 339 (396)
Q Consensus 332 d~~i~iw~ 339 (396)
|..++||.
T Consensus 336 Ds~lriW~ 343 (343)
T KOG0286|consen 336 DSTLRIWA 343 (343)
T ss_pred hHheeecC
Confidence 99999994
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=253.63 Aligned_cols=293 Identities=15% Similarity=0.202 Sum_probs=239.8
Q ss_pred CcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc--cceeecCCCCC
Q 016032 33 NHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA--LSLMNVNPNGW 110 (396)
Q Consensus 33 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~ 110 (396)
+-+|++++.|.+||+|...++.+..++. -....|+.+...|+ ...|++++. ..||+||++++.. +..+..+...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kN- 85 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKN- 85 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEEeccCCc-
Confidence 4689999999999999999999999984 45678999999999 888888874 5799999998875 4445444332
Q ss_pred CCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEe
Q 016032 111 HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 190 (396)
Q Consensus 111 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd 190 (396)
|.++.|..+|+.+++|++||.++|||++..... ....+..+|+++..+| +...|++|..+|.|++||
T Consensus 86 --------VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q----R~~~~~spVn~vvlhp-nQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 86 --------VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ----RNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWD 152 (311)
T ss_pred --------eEEEEEeecCeEEEecCCCceEEEEeccCcccc----hhccCCCCcceEEecC-CcceEEeecCCCcEEEEE
Confidence 999999999999999999999999999994433 3345557999999999 888999999999999999
Q ss_pred cCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCC-ceeEEeCCCCC
Q 016032 191 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDP 269 (396)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 269 (396)
+........+ ......+|.++...|+|.+|+.+...|...+|++-+.....++.. ...+..+.. .+++.++|+
T Consensus 153 l~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P---~~k~~ah~~~il~C~lSPd-- 226 (311)
T KOG0315|consen 153 LGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP---VHKFQAHNGHILRCLLSPD-- 226 (311)
T ss_pred ccCCcccccc-CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE---hhheecccceEEEEEECCC--
Confidence 9875443322 124557899999999999999999999999999988654443322 222333332 358999999
Q ss_pred CCceeeEeeeeeeecccccccceEEEEcCcc-chhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceee
Q 016032 270 SESLAVIGRYISENYNGAALHPIDFIDITTG-QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELV 347 (396)
Q Consensus 270 ~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~ 347 (396)
++|++ +.+.|.+++||++.+- +.-..+.+|. ..+..+ +||.+|+||++|+ |+.+++|++..++.++
T Consensus 227 -------~k~la---t~ssdktv~iwn~~~~~kle~~l~gh~-rWvWdc-~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 227 -------VKYLA---TCSSDKTVKIWNTDDFFKLELVLTGHQ-RWVWDC-AFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred -------CcEEE---eecCCceEEEEecCCceeeEEEeecCC-ceEEee-eeccCccEEEecCCCCceeecccccCceee
Confidence 89999 8999999999999887 4444556666 788888 8999999999999 9999999999999999
Q ss_pred eccccceEEEeec
Q 016032 348 EQKEEMKIIVCGK 360 (396)
Q Consensus 348 ~~~~~~~~~~~~~ 360 (396)
...+|-+..+|..
T Consensus 295 qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 295 QYQGHHKAAVCVA 307 (311)
T ss_pred ecCCcccccEEEE
Confidence 9999988777754
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4e-42 Score=263.38 Aligned_cols=296 Identities=21% Similarity=0.313 Sum_probs=243.9
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
++..+.+|++.|+.+.|+|+| .+||||+.|..|.+|++.....-.-..++|.+.|..+.|.++ +..+++++.|.+|+.
T Consensus 39 p~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-CCEEEEecCCceEEE
Confidence 445788999999999999998 689999999999999987766555555899999999999999 999999999999999
Q ss_pred EECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEec
Q 016032 92 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 170 (396)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 170 (396)
||+++|+....++.+... ++++.-+.-| .++.+++.|+++++||+++..... ......+++++.|.
T Consensus 117 wD~~tG~~~rk~k~h~~~---------vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~ 183 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSF---------VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFK 183 (338)
T ss_pred Eecccceeeehhccccce---------eeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEec
Confidence 999999999888766543 6776644434 456678899999999999865543 23334479999999
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeec
Q 016032 171 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 250 (396)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 250 (396)
. .+..+.+|+-|+.|++||++.......+ .+|..+|+.+..+|+|.++.+-+.|.++++||++........-.+...
T Consensus 184 d-~s~qv~sggIdn~ikvWd~r~~d~~~~l--sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 184 D-TSDQVISGGIDNDIKVWDLRKNDGLYTL--SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred c-cccceeeccccCceeeeccccCcceEEe--ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 8 8899999999999999999875543332 379999999999999999999999999999999866543332223333
Q ss_pred ccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEee
Q 016032 251 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 330 (396)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg 330 (396)
+..+-....+.+.|+|+ ++++. .|+.|..+++||..+...+..+.+|. ..|..+ +|+|...+|.++
T Consensus 261 ~~hnfeknlL~cswsp~---------~~~i~---ags~dr~vyvwd~~~r~~lyklpGh~-gsvn~~-~Fhp~e~iils~ 326 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPN---------GTKIT---AGSADRFVYVWDTTSRRILYKLPGHY-GSVNEV-DFHPTEPIILSC 326 (338)
T ss_pred chhhhhhhcceeeccCC---------CCccc---cccccceEEEeecccccEEEEcCCcc-eeEEEe-eecCCCcEEEEe
Confidence 33333444578999999 77777 79999999999999999999999987 778888 899999999999
Q ss_pred c-CCcEEEEc
Q 016032 331 S-SRSIFIWR 339 (396)
Q Consensus 331 ~-d~~i~iw~ 339 (396)
+ |.+|++=.
T Consensus 327 ~sdk~i~lge 336 (338)
T KOG0265|consen 327 SSDKTIYLGE 336 (338)
T ss_pred ccCceeEeec
Confidence 8 99998743
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.4e-42 Score=274.74 Aligned_cols=255 Identities=20% Similarity=0.286 Sum_probs=223.1
Q ss_pred CCCCCCccceeeeccccCCeEEEEecCC-CCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEE
Q 016032 4 AHVIPDQVNCAVIRYHSRRVTCLEFHPT-NNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 82 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 82 (396)
.|..|+...+++|.||++.|.++.|+|. .+.-||||+.||++++|++.+...+..+ .+|...|..++|+|+ +++|+|
T Consensus 201 vW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPs-G~~L~T 278 (459)
T KOG0272|consen 201 VWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPS-GKFLGT 278 (459)
T ss_pred EeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCC-Cceeee
Confidence 5899999999999999999999999998 3457999999999999999998777777 789999999999999 999999
Q ss_pred EeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCc
Q 016032 83 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 162 (396)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 162 (396)
++.|.+-++||++++..+...+.+..+ |.+++|.++|.++++|+.|..-+|||++++..+. ....|..
T Consensus 279 asfD~tWRlWD~~tk~ElL~QEGHs~~---------v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im---~L~gH~k 346 (459)
T KOG0272|consen 279 ASFDSTWRLWDLETKSELLLQEGHSKG---------VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM---FLAGHIK 346 (459)
T ss_pred cccccchhhcccccchhhHhhcccccc---------cceeEecCCCceeeccCccchhheeecccCcEEE---Eeccccc
Confidence 999999999999999988777666554 9999999999999999999999999999988664 4455777
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEccccccc
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLD 241 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 241 (396)
+|.+++|+| +|..|++|+.|++++|||++..+.... ..+|.+-|+.+.|+| .|.+|++++.|++++||...++.++
T Consensus 347 ~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~--ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 347 EILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYT--IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred ceeeEeECC-CceEEeecCCCCcEEEeeeccccccee--cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 999999999 999999999999999999986554222 237999999999999 8999999999999999999988875
Q ss_pred CCCcceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEE
Q 016032 242 SPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 296 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd 296 (396)
+.+ .+|. ..+++..+|+ +++++ +++.|.++++|.
T Consensus 424 ksL---------aGHe~kV~s~Dis~d---------~~~i~---t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 KSL---------AGHEGKVISLDISPD---------SQAIA---TSSFDRTIKLWR 458 (459)
T ss_pred hhh---------cCCccceEEEEeccC---------CceEE---EeccCceeeecc
Confidence 532 2222 2357788887 88888 899999999995
No 9
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=244.13 Aligned_cols=292 Identities=19% Similarity=0.296 Sum_probs=230.3
Q ss_pred cceeeeccccCCeEEEEecCC-CCcEEEEEeCCCcEEEeeccc---ceeeeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 11 VNCAVIRYHSRRVTCLEFHPT-NNHILLSGDKKGQVGVWDFYK---VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
..++.+++|++.|..++|+|- | .+||||+.|..|+||+... -.+...+..+|+..|++++|+|. +++|++++.|
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~-g~~La~aSFD 82 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH-GRYLASASFD 82 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC-CcEEEEeecc
Confidence 456889999999999999998 6 6999999999999999984 34555555789999999999999 9999999999
Q ss_pred CeEEEEECCCC--cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 87 GTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 87 g~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
.++.||.-..+ +++..++.+... |.+++|+++|++||++++|..|.+|.+..............|...|
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnE---------VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENE---------VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccc---------eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 99999987654 455556555443 9999999999999999999999999998665554444556666689
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCC
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 243 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 243 (396)
..+.|+| ...+|++++.|.+|++|+-.....-.+.+.+ +|...|.+++|++.|..|++++.|++++||-..+.-..
T Consensus 154 K~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~-- 230 (312)
T KOG0645|consen 154 KHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG-- 230 (312)
T ss_pred cEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch--
Confidence 9999999 8999999999999999987643333444444 68889999999999999999999999999986522110
Q ss_pred CcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCcc------chhhhhcCCCCCCCcce
Q 016032 244 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG------QLVAEVMDPNITTISPV 317 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~------~~~~~~~~~~~~~i~~~ 317 (396)
......+.+.|. + | .|+ +++.|+.|++|.-..+ +++....+.|...|.++
T Consensus 231 ----------~~sr~~Y~v~W~-~---------~-~Ia---S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 231 ----------MHSRALYDVPWD-N---------G-VIA---SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred ----------hcccceEeeeec-c---------c-ceE---eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 001111245565 2 1 233 6889999999976542 33444445555688888
Q ss_pred eeeccC-CcEEEeec-CCcEEEEcCC
Q 016032 318 NKLHPR-DDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 318 ~~~~~~-~~~l~sg~-d~~i~iw~~~ 341 (396)
.|.|. ..+|++|+ ||.|++|.+.
T Consensus 287 -~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 287 -QWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred -EEcCCCCCceeecCCCceEEEEEec
Confidence 89995 67888888 9999999874
No 10
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-40 Score=259.42 Aligned_cols=299 Identities=19% Similarity=0.326 Sum_probs=244.6
Q ss_pred CCCCCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEE
Q 016032 1 MKPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV 80 (396)
Q Consensus 1 ~~p~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 80 (396)
.+|.|..|... .++++||.+-|.|+++.|.+ .+|++|+.|++|+|||+.+++....+ .+|...|..+++++. ..++
T Consensus 133 ~rPeWHapwKl-~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r-HpYl 208 (460)
T KOG0285|consen 133 PRPEWHAPWKL-YRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR-HPYL 208 (460)
T ss_pred CCccccCccee-hhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc-CceE
Confidence 47889888764 78999999999999999986 79999999999999999999988888 799999999999999 8999
Q ss_pred EEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecC
Q 016032 81 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 160 (396)
Q Consensus 81 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 160 (396)
++++.|+.|+.||++..+.++.+..+-. .|+|++.+|.-..|++|+.|..+++||+++...+. ....|
T Consensus 209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS---------~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~---~l~GH 276 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVIRHYHGHLS---------GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH---VLSGH 276 (460)
T ss_pred EEecCCCeeEEEechhhhhHHHhccccc---------eeEEEeccccceeEEecCCcceEEEeeecccceEE---EecCC
Confidence 9999999999999999999988754443 39999999999999999999999999999976543 45667
Q ss_pred CccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 161 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 161 ~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
..+|..+.+.| -...+++|+.|++|++||++.++....+ ..|...|.+++.+|....+|+++.| .|+-|++..|..
T Consensus 277 ~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tl--t~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f 352 (460)
T KOG0285|consen 277 TNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITL--THHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF 352 (460)
T ss_pred CCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEee--ecccceeeEEecCCchhhhhccCCc-cceeccCCccch
Confidence 77999999999 5566899999999999999876653333 3689999999999999999999987 699999988876
Q ss_pred cCCCcceeecccccccCCce-eEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhc---CC----CCC
Q 016032 241 DSPSREIVHSHDFNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM---DP----NIT 312 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~---~~----~~~ 312 (396)
+.. +.++...+ .+.-+.+ |-++ +|+..|.|.+||.++|...+.+. ++ ...
T Consensus 353 ~~n---------lsgh~~iintl~~nsD---------~v~~----~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEa 410 (460)
T KOG0285|consen 353 LQN---------LSGHNAIINTLSVNSD---------GVLV----SGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEA 410 (460)
T ss_pred hhc---------cccccceeeeeeeccC---------ceEE----EcCCceEEEEEecCcCcccccccccccCCcccccc
Confidence 542 22222211 2222222 3333 59999999999999987665542 11 224
Q ss_pred CCcceeeeccCCcEEEeec-CCcEEEEcCCC
Q 016032 313 TISPVNKLHPRDDVLASGS-SRSIFIWRPKE 342 (396)
Q Consensus 313 ~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~ 342 (396)
.|.+. +|...|..|++|. |.+|++|.-+.
T Consensus 411 gI~as-~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 411 GIFAS-CFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ceeEE-eecccCceEEeccCCcceEEEeccc
Confidence 45555 7999999999999 99999997543
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.6e-40 Score=265.12 Aligned_cols=317 Identities=19% Similarity=0.323 Sum_probs=255.9
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce----eeeEec---------CCcccceeEEEEecCCCcEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----EKIVYG---------NIHSCIVNNIRFNPTNDGTV 80 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~---------~~~~~~v~~~~~~~~~~~~l 80 (396)
+.+. |+.+|.+.+|+|-...+|++|+.|-..++|++.... ....+. ...+..|++++|+.+ +..|
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~L 250 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLL 250 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeE
Confidence 3444 999999999999875589999999999999997511 111110 123467999999999 9999
Q ss_pred EEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecC
Q 016032 81 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 160 (396)
Q Consensus 81 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 160 (396)
++|+.||.+++|+.. |..+..+..+..+ |.++.|+..|++|++++.|+++.+||..++.... .+..+
T Consensus 251 atG~~~G~~riw~~~-G~l~~tl~~HkgP---------I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q---~f~~~ 317 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKD-GNLISTLGQHKGP---------IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ---QFEFH 317 (524)
T ss_pred EEeecCcEEEEEecC-chhhhhhhccCCc---------eEEEEEcCCCCEEEeccCCccEEEEeccCceEEE---eeeec
Confidence 999999999999976 5566666554443 9999999999999999999999999998876543 22333
Q ss_pred CccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 161 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 161 ~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
..+-..+.|- +..-|++++.|+.|+++.+....+...+ .+|.+.|.++.|+|.|.+|++++.|++++||.+.....
T Consensus 318 s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~--~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 318 SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTF--IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred cCCccceEEe--cCceEeecCCCceEEEEEecCCCcceee--ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 3345678887 4677999999999999999754443333 37999999999999999999999999999999876554
Q ss_pred cCCCcceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceee
Q 016032 241 DSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNK 319 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 319 (396)
. +.+..|. ..+.+.|+|.++...-...+..++ +.+.|++|++||+..|.++..|..|. .+|+++ +
T Consensus 394 ~---------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~---sas~dstV~lwdv~~gv~i~~f~kH~-~pVysv-a 459 (524)
T KOG0273|consen 394 V---------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA---SASFDSTVKLWDVESGVPIHTLMKHQ-EPVYSV-A 459 (524)
T ss_pred h---------hhhhhhccceeeEeecCCCCccCCCcCCceEE---EeecCCeEEEEEccCCceeEeeccCC-CceEEE-E
Confidence 2 2333333 346899999988777777777777 78999999999999999999998887 899999 9
Q ss_pred eccCCcEEEeec-CCcEEEEcCCCcceeeeccccce-EEEeecCCC
Q 016032 320 LHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK-IIVCGKADK 363 (396)
Q Consensus 320 ~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~ 363 (396)
|+|+|+++|+|+ ||.|.+|+.++++.++...+... ..+|.....
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAG 505 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCC
Confidence 999999999999 99999999999999999998887 455654443
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=264.20 Aligned_cols=285 Identities=18% Similarity=0.319 Sum_probs=233.4
Q ss_pred ccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCC
Q 016032 17 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 96 (396)
Q Consensus 17 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 96 (396)
..-..+|..+.|.|+| +.|++|+..|.+.+|+...-..... .+.|..+|+++.|+++ +.++++|..+|.|++|+..-
T Consensus 93 NKvkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEti-lQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETI-LQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHH-hhhhcccceeEEEccC-CCEEEEcCCCceEEecccch
Confidence 3345689999999999 6799999999999999865443333 3789999999999999 99999999999999999875
Q ss_pred CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCE
Q 016032 97 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 176 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 176 (396)
... ..+..+.. ..|.+++|+|+...+++++.||.|+|||....+... ....|+..|.+++|+| ...+
T Consensus 170 nnV-k~~~ahh~--------eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~---vL~GHgwdVksvdWHP-~kgL 236 (464)
T KOG0284|consen 170 NNV-KIIQAHHA--------EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER---VLRGHGWDVKSVDWHP-TKGL 236 (464)
T ss_pred hhh-HHhhHhhh--------hhhheeccCCCCceeEEecCCCeEEEEeccCCchhh---eeccCCCCcceeccCC-ccce
Confidence 433 33333221 239999999999999999999999999998876543 3366777899999999 8899
Q ss_pred EEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccccccc
Q 016032 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 256 (396)
Q Consensus 177 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
+++++.|..|++||.+++++...+. .|+..|..+.|+|++++|++++.|..+++||+++-+.+.. +.+|
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh--~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~---------~r~H 305 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLH--GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT---------YRGH 305 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhh--hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH---------hhcc
Confidence 9999999999999999866644432 6999999999999999999999999999999995544322 2222
Q ss_pred CC-ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCc
Q 016032 257 LT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 334 (396)
Q Consensus 257 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~ 334 (396)
.. ..++.|+|-.. .++. +|+.||.|..|.+...+.+..+...+...|.++ +|+|-|.+|++|+ |.+
T Consensus 306 kkdv~~~~WhP~~~--------~lft---sgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl-~~hPlGhil~tgsnd~t 373 (464)
T KOG0284|consen 306 KKDVTSLTWHPLNE--------SLFT---SGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSL-AYHPLGHILATGSNDRT 373 (464)
T ss_pred hhhheeeccccccc--------ccee---eccCCCceEEEeccccccccCCCcccccceeee-eccccceeEeecCCCcc
Confidence 22 24788999752 2333 689999999999987778888877777999999 9999999999999 999
Q ss_pred EEEEcC
Q 016032 335 IFIWRP 340 (396)
Q Consensus 335 i~iw~~ 340 (396)
+++|.-
T Consensus 374 ~rfw~r 379 (464)
T KOG0284|consen 374 VRFWTR 379 (464)
T ss_pred eeeecc
Confidence 999964
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-39 Score=244.12 Aligned_cols=261 Identities=17% Similarity=0.192 Sum_probs=212.4
Q ss_pred CCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 7 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 7 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
.+.+..++.|.||...|..+..+++| +++++++.|+++++||+.+++....+ .+|...|.+++|+|+ ..++++|+.|
T Consensus 50 ~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~d-n~qivSGSrD 126 (315)
T KOG0279|consen 50 IKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTD-NRQIVSGSRD 126 (315)
T ss_pred cccCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCC-CceeecCCCc
Confidence 34566788999999999999999999 68999999999999999999777776 789999999999999 9999999999
Q ss_pred CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC--CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 87 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
.+|++|++.... ..++.... ... -|.|+.|+|+ ..+|++++.|+.|++||+++.+... ....|...+
T Consensus 127 kTiklwnt~g~c-k~t~~~~~-----~~~--WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~gh~~~v 195 (315)
T KOG0279|consen 127 KTIKLWNTLGVC-KYTIHEDS-----HRE--WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---TFIGHSGYV 195 (315)
T ss_pred ceeeeeeecccE-EEEEecCC-----CcC--cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---ccccccccE
Confidence 999999987544 33332221 022 3999999998 7899999999999999999876543 234566689
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCC
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 244 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 244 (396)
+.++++| +|.++++|+.||.+.+||++..+ .+..+++...|.+++|+|+...|+.+. +..|+|||+.++.++..+
T Consensus 196 ~t~~vSp-DGslcasGgkdg~~~LwdL~~~k---~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 196 NTVTVSP-DGSLCASGGKDGEAMLWDLNEGK---NLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEEL 270 (315)
T ss_pred EEEEECC-CCCEEecCCCCceEEEEEccCCc---eeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhc
Confidence 9999999 99999999999999999998644 466778999999999999987777665 456999999998876544
Q ss_pred cceeecc-cccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 245 REIVHSH-DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 245 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
..-.... ........+.++|+++ |+-++ .|..|+.|++|.+.
T Consensus 271 ~~d~~g~s~~~~~~~clslaws~d---------G~tLf---~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWSAD---------GQTLF---AGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccccCCcEEEEEEEcCC---------CcEEE---eeecCCcEEEEEee
Confidence 4322221 1222333467899998 77777 79999999999874
No 14
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.7e-40 Score=268.93 Aligned_cols=293 Identities=22% Similarity=0.347 Sum_probs=243.3
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccc-ceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCe
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 88 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 88 (396)
...+..+.||+..|+++.|.|....+|++++.|+.|+||++.. +.++.++ .+|..+|..++|+++ +..|++++.|+.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~-g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNC-GTSFLSASFDRF 281 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhcccc-CCeeeeeeccee
Confidence 4457899999999999999994448999999999999999988 4555555 899999999999999 999999999999
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEE
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 167 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 167 (396)
|++||+++|+++..+..... +.|+.|.|++ +.+++|+.|+.|+.||+++++...+ ...|-+.|..+
T Consensus 282 lKlwDtETG~~~~~f~~~~~----------~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe---Yd~hLg~i~~i 348 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKV----------PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE---YDRHLGAILDI 348 (503)
T ss_pred eeeeccccceEEEEEecCCC----------ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH---HHhhhhheeee
Confidence 99999999999998876543 8999999998 8899999999999999999886543 23455589999
Q ss_pred EeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcce
Q 016032 168 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 247 (396)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 247 (396)
.|-+ ++..+++.++|+++++|+.+..-..+.+.. .+.....++..+|++.+++.-+.|+.|.+|.+...-...
T Consensus 349 ~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n----- 421 (503)
T KOG0282|consen 349 TFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN----- 421 (503)
T ss_pred EEcc-CCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhccCceEEEEecccccccC-----
Confidence 9999 999999999999999999986554443332 234456789999999999999999999999975432211
Q ss_pred eecccccccCC---ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCC
Q 016032 248 VHSHDFNRHLT---PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 324 (396)
Q Consensus 248 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (396)
....+.++.. .+.+.|||+ |++++ +|..+|.+.+||..+-+++..+..|. ..+..+ .|+|..
T Consensus 422 -kkK~feGh~vaGys~~v~fSpD---------G~~l~---SGdsdG~v~~wdwkt~kl~~~lkah~-~~ci~v-~wHP~e 486 (503)
T KOG0282|consen 422 -KKKRFEGHSVAGYSCQVDFSPD---------GRTLC---SGDSDGKVNFWDWKTTKLVSKLKAHD-QPCIGV-DWHPVE 486 (503)
T ss_pred -HhhhhcceeccCceeeEEEcCC---------CCeEE---eecCCccEEEeechhhhhhhccccCC-cceEEE-EecCCC
Confidence 1122333322 357899999 99999 99999999999999999999999885 556666 899976
Q ss_pred -cEEEeec-CCcEEEEc
Q 016032 325 -DVLASGS-SRSIFIWR 339 (396)
Q Consensus 325 -~~l~sg~-d~~i~iw~ 339 (396)
..||+++ ||.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 5788888 99999996
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.1e-38 Score=233.68 Aligned_cols=274 Identities=18% Similarity=0.269 Sum_probs=224.6
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee--eeEecCCcccceeEEEEecCCCcEEEE
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFNPTNDGTVYA 82 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s 82 (396)
|...++.|..+++...+.|+.++..|++ +.||+++. ..||+||+.++.. +..+ .+|+..|+++.|..+ +.++++
T Consensus 25 Wqa~tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~d-grWMyT 100 (311)
T KOG0315|consen 25 WQALTGICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCD-GRWMYT 100 (311)
T ss_pred eehhcCeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEE-eccCCceEEEEEeec-CeEEEe
Confidence 7788899999999888999999999998 67888775 5899999998654 4444 789999999999999 999999
Q ss_pred EeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCc
Q 016032 83 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 162 (396)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 162 (396)
|+.||+++|||++...+.+.+... .+|+++..+|+...|++|..+|.|++||+.......+++. ....
T Consensus 101 gseDgt~kIWdlR~~~~qR~~~~~----------spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP--e~~~ 168 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLSCQRNYQHN----------SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP--EDDT 168 (311)
T ss_pred cCCCceEEEEeccCcccchhccCC----------CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC--CCCc
Confidence 999999999999997776666544 3399999999999999999999999999998766554433 3345
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcc---ccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL---CDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 238 (396)
.|.+++..| ++.+++.+...|..++|++-..+....+ ..+ .|++.+..+.+||++++||+++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 899999999 9999999999999999998764332222 222 68999999999999999999999999999999876
Q ss_pred cccCCCcceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCc
Q 016032 239 NLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 315 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~ 315 (396)
+.. .....++. -...++|+.+ |+|+. +|+.|+.+++|++..++.++...+|+...++
T Consensus 248 -~kl-------e~~l~gh~rWvWdc~FS~d---------g~Ylv---Tassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 248 -FKL-------ELVLTGHQRWVWDCAFSAD---------GEYLV---TASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred -eee-------EEEeecCCceEEeeeeccC---------ccEEE---ecCCCCceeecccccCceeeecCCcccccEE
Confidence 110 11111121 1246777777 99999 8999999999999999999999998855443
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-39 Score=251.64 Aligned_cols=298 Identities=19% Similarity=0.269 Sum_probs=249.3
Q ss_pred CCCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEE
Q 016032 3 PAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 82 (396)
Q Consensus 3 p~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 82 (396)
|.-.+|.+.+.+.+.+|..+|+.+-|+|+- .++++++.|++|++||..+++....+ ++|...|..++|+.. +.++++
T Consensus 91 ~~~wipRp~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~-Gk~l~t 167 (406)
T KOG0295|consen 91 PALWIPRPNLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS-GKYLAT 167 (406)
T ss_pred hhhcCCCCCchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC-ccEEEe
Confidence 444566667778899999999999999998 68999999999999999999986666 899999999999998 999999
Q ss_pred EeCCCeEEEEECCC-CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCC
Q 016032 83 ASSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 161 (396)
Q Consensus 83 ~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 161 (396)
++.|-.+++||..+ .+++.....+... |.++.|-|.|.++++++.|.+|+.|++.++.... .+..+.
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~---------vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~---t~~~h~ 235 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHG---------VSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK---TFPGHS 235 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccc---------eeeEEEEecCCeeeecccccceeEEecccceeEE---eccCch
Confidence 99999999999987 3444444333322 9999999999999999999999999999987654 445556
Q ss_pred ccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCC---------------CCEEEEEeC
Q 016032 162 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS---------------GSKILTTSQ 226 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~ 226 (396)
..+..++.+. ++.++++++.|.+|++|-+.+.+....+. .|..+|.+++|-|. +.++++++.
T Consensus 236 ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR--~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr 312 (406)
T KOG0295|consen 236 EWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELR--EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR 312 (406)
T ss_pred HhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhh--ccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence 6899999999 99999999999999999998876655554 48888999999762 258999999
Q ss_pred CCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhh
Q 016032 227 DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV 306 (396)
Q Consensus 227 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~ 306 (396)
|++|++||+.++.++-.+ ......+ -.++|+|. |+|++ +...|+++++||++++++..++
T Consensus 313 DktIk~wdv~tg~cL~tL------~ghdnwV--r~~af~p~---------Gkyi~---ScaDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 313 DKTIKIWDVSTGMCLFTL------VGHDNWV--RGVAFSPG---------GKYIL---SCADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred cceEEEEeccCCeEEEEE------eccccee--eeeEEcCC---------CeEEE---EEecCCcEEEEEeccceeeecc
Confidence 999999999999874322 1222222 25788998 99999 8999999999999999999999
Q ss_pred cCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcC
Q 016032 307 MDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 340 (396)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~ 340 (396)
..|. .-++++ +|+.+..++++|+ |..+++|.-
T Consensus 373 ~ah~-hfvt~l-Dfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 373 EAHE-HFVTSL-DFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCc-ceeEEE-ecCCCCceEEeccccceeeeeec
Confidence 8554 556666 9999999999999 999999963
No 17
>KOG4328 consensus WD40 protein [Function unknown]
Probab=100.00 E-value=7.4e-38 Score=253.09 Aligned_cols=320 Identities=38% Similarity=0.644 Sum_probs=265.5
Q ss_pred CCCCCCCCccceeeeccccCCeEEEEecCCCC-cEEEEEeCCCcEEEeeccc---ceeeeEecCCcccceeEEEEecCCC
Q 016032 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNN-HILLSGDKKGQVGVWDFYK---VSEKIVYGNIHSCIVNNIRFNPTND 77 (396)
Q Consensus 2 ~p~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~ 77 (396)
++...+.......+++-|.+.|++++|+|..+ .++|+|+.-|.|-+||+.+ ......+...|..+|.+|.|+|.+.
T Consensus 168 ~~dl~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 168 KFDLDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT 247 (498)
T ss_pred ccccccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh
Confidence 44566777777888999999999999999886 7899999999999999953 2233334477999999999999988
Q ss_pred cEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceee
Q 016032 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI 157 (396)
Q Consensus 78 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~ 157 (396)
..+++.+.||+|++-|++.+.....+... ..+..+..+.|+.+...++.+..=|...+||+++..........
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLD-------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcC-------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 99999999999999999987665554432 12244888999999888999888889999999998775555556
Q ss_pred ecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCc--cccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 158 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS--LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 158 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
|.. .|++++++|....+|++++.|++.+|||+|....... +..+.|...|.+..|||.+-.|++.+.|..|+|||.
T Consensus 321 h~k--KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 321 HKK--KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred hhc--ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 655 7999999999999999999999999999998766553 667789999999999998777999999999999998
Q ss_pred c-cccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCC
Q 016032 236 I-FGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTI 314 (396)
Q Consensus 236 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i 314 (396)
. -+....+...+.|.+...++.+++...|.|+ -.+++ .|..-..|-|+|-..++.+..+..+....|
T Consensus 399 s~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~---------~~li~---vg~~~r~IDv~~~~~~q~v~el~~P~~~tI 466 (498)
T KOG4328|consen 399 SCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPD---------YNLIV---VGRYPRPIDVFDGNGGQMVCELHDPESSTI 466 (498)
T ss_pred ccccccCCccceeeccCcccccccchhheeCCC---------ccEEE---EeccCcceeEEcCCCCEEeeeccCcccccc
Confidence 3 3444567788889999999999999999996 33333 455556699999999999999988888899
Q ss_pred cceeeeccCCcEEEeec--CCcEEEEcCCC
Q 016032 315 SPVNKLHPRDDVLASGS--SRSIFIWRPKE 342 (396)
Q Consensus 315 ~~~~~~~~~~~~l~sg~--d~~i~iw~~~~ 342 (396)
.+++.|||-+..+++|+ .|.|+||--+.
T Consensus 467 ~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 467 PSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccceeecccccceeccCCccceEEEEecCC
Confidence 99999999999777766 68899886543
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-38 Score=267.09 Aligned_cols=313 Identities=18% Similarity=0.256 Sum_probs=255.2
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeC-CCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEE
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 83 (396)
+.+|....++.+.--..+|..++|+..|+ +||.|+. =|.+.||++.....+... ++|...+++++++|| ++++++|
T Consensus 292 yelP~f~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpD-gq~iaTG 368 (893)
T KOG0291|consen 292 YELPDFNLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPD-GQLIATG 368 (893)
T ss_pred EecCCceEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCC-CcEEEec
Confidence 46788889999998889999999999995 7777765 489999999988877777 799999999999999 9999999
Q ss_pred eCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 84 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
+.||.|+|||..++-+..++..+... ++.+.|+..++.+++++-||+|+.||+............ ....
T Consensus 369 ~eDgKVKvWn~~SgfC~vTFteHts~---------Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--~p~Q 437 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSGFCFVTFTEHTSG---------VTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--EPIQ 437 (893)
T ss_pred cCCCcEEEEeccCceEEEEeccCCCc---------eEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC--Ccee
Confidence 99999999999999999999877665 999999999999999999999999999887655433222 2225
Q ss_pred EEEEEeccCCCCEEEEeeCCC-cEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccC
Q 016032 164 VVGLHCNPIQPELLLSCGNDH-FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 242 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 242 (396)
..|++..| .+.++.+|+.|. .|.+|++.+++....+. +|.++|.+++|+|.+..|++++.|.+|++||+-.....
T Consensus 438 fscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~- 513 (893)
T KOG0291|consen 438 FSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT- 513 (893)
T ss_pred eeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhc--CCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-
Confidence 77899999 888888888775 69999998766544442 79999999999999999999999999999999754221
Q ss_pred CCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCC-------------
Q 016032 243 PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP------------- 309 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~------------- 309 (396)
.-.+......+.+.|.|+ |+-++ ..+.||+|.+||...+..+..+.+.
T Consensus 514 -------vEtl~i~sdvl~vsfrPd---------G~ela---VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 514 -------VETLEIRSDVLAVSFRPD---------GKELA---VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred -------eeeEeeccceeEEEEcCC---------CCeEE---EEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence 011122223357889998 77777 6788999999999877665443311
Q ss_pred ------CCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceE
Q 016032 310 ------NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 355 (396)
Q Consensus 310 ------~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~ 355 (396)
....++.+ ++++||.+|++|+ ...|+||++.++-+++.++.....
T Consensus 575 ta~~sa~~K~Ftti-~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 575 TAENSAKGKTFTTI-CYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred ehhhcccCCceEEE-EEcCCCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 12445666 8999999999999 899999999999999988765543
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=270.91 Aligned_cols=330 Identities=16% Similarity=0.224 Sum_probs=251.0
Q ss_pred CCCCCCCCccceeeeccccCCeEEEEecCCCCc-EEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEE
Q 016032 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNH-ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV 80 (396)
Q Consensus 2 ~p~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 80 (396)
.|.|++..+.+.+.|+||.+.|.++.|+|+-.+ +|++|..|+.+++||+............|.+.|++++|.++ +..+
T Consensus 129 v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d-~~~~ 207 (775)
T KOG0319|consen 129 VKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED-SLEL 207 (775)
T ss_pred EEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC-CceE
Confidence 368999999999999999999999999998643 57899999999999999655533333779999999999999 8888
Q ss_pred EEEeCCCeEEEEECCCCcccceeec----------------------------------------------CCCC-----
Q 016032 81 YAASSDGTVSCTDLETGLALSLMNV----------------------------------------------NPNG----- 109 (396)
Q Consensus 81 ~s~~~dg~v~iwd~~~~~~~~~~~~----------------------------------------------~~~~----- 109 (396)
++++.|..+.+||+.+.+....... +...
T Consensus 208 ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~ 287 (775)
T KOG0319|consen 208 LSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHL 287 (775)
T ss_pred EEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcc
Confidence 8888888888888864322211100 0000
Q ss_pred -------------------------------------------CCC----------------------------CCccee
Q 016032 110 -------------------------------------------WHG----------------------------PRTWRM 118 (396)
Q Consensus 110 -------------------------------------------~~~----------------------------~~~~~~ 118 (396)
+-+ +.+...
T Consensus 288 ~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~ 367 (775)
T KOG0319|consen 288 LAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEA 367 (775)
T ss_pred eeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhh
Confidence 000 011123
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCc-cceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCC
Q 016032 119 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 197 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 197 (396)
|.+++...+|.+|++++.|..+++|.+..+.... .......|...|.+++++.....+|+++|.|++|++|++...+..
T Consensus 368 vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~ 447 (775)
T KOG0319|consen 368 VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET 447 (775)
T ss_pred eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc
Confidence 4555544566788999999999999884432221 122345566689999998767789999999999999999762221
Q ss_pred Cc---c----ccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCC-ceeEEeCCCCC
Q 016032 198 SS---L----CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDP 269 (396)
Q Consensus 198 ~~---~----~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 269 (396)
.. + ....|...|++++++|+.+++|+||.|.+.+||++....+ ...+.+|.. .+++.|+|.
T Consensus 448 ~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l---------~~vLsGH~RGvw~V~Fs~~-- 516 (775)
T KOG0319|consen 448 AFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRL---------LGVLSGHTRGVWCVSFSKN-- 516 (775)
T ss_pred cccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceE---------EEEeeCCccceEEEEeccc--
Confidence 11 1 1125889999999999999999999999999999985544 233334433 357888887
Q ss_pred CCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeee
Q 016032 270 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVE 348 (396)
Q Consensus 270 ~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~ 348 (396)
.+.++ +++.|.+|+||.+.+..++.+|.+|. ..|..+ .|-.+|..|+|++ ||.|++|++.+.+++..
T Consensus 517 -------dq~la---T~SgD~TvKIW~is~fSClkT~eGH~-~aVlra-~F~~~~~qliS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 517 -------DQLLA---TCSGDKTVKIWSISTFSCLKTFEGHT-SAVLRA-SFIRNGKQLISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred -------cceeE---eccCCceEEEEEeccceeeeeecCcc-ceeEee-eeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence 66677 78999999999999999999999998 566666 7999999999988 99999999999999999
Q ss_pred ccccceE
Q 016032 349 QKEEMKI 355 (396)
Q Consensus 349 ~~~~~~~ 355 (396)
+..|..-
T Consensus 585 lD~H~Dr 591 (775)
T KOG0319|consen 585 LDAHNDR 591 (775)
T ss_pred hhhccce
Confidence 9998874
No 20
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-37 Score=228.74 Aligned_cols=287 Identities=16% Similarity=0.216 Sum_probs=236.8
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
.++.|..|+++|.++.|+-+| ++.++++.|.+|++|+...+..+.++ .+|...|..++.+.+ +..|++|+.|..+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D-nskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD-NSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc-ccccccCCCCceEEE
Confidence 467899999999999999999 68999999999999999999999888 799999999999999 899999999999999
Q ss_pred EECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 92 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
||+++|+..+.+..+... |+.+.|+.+...+++|+-|..+++||.++..... ..........|.++...
T Consensus 86 wDV~TGkv~Rr~rgH~aq---------VNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQildea~D~V~Si~v~- 154 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQ---------VNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQILDEAKDGVSSIDVA- 154 (307)
T ss_pred EEcccCeeeeecccccce---------eeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchhhhhcCceeEEEec-
Confidence 999999999998766543 9999999999999999999999999999865432 11233444578898885
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecc
Q 016032 172 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 251 (396)
Q Consensus 172 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 251 (396)
+..|++|+.||+++.||+|.+....- ....+|++++|+++++.++.++.|+++++.|-.+|+++....
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sD----y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk------ 222 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSD----YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK------ 222 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehh----hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc------
Confidence 47899999999999999987544222 245679999999999999999999999999999999865332
Q ss_pred cccccCC---ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEE
Q 016032 252 DFNRHLT---PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 328 (396)
Q Consensus 252 ~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 328 (396)
++.. .+.++++.. ...++ +|+.||.+++||+..+..+..+..+..-.+..+ +++|.-..++
T Consensus 223 ---Ghkn~eykldc~l~qs---------dthV~---sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl-~~hp~~~~f~ 286 (307)
T KOG0316|consen 223 ---GHKNMEYKLDCCLNQS---------DTHVF---SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDL-SCHPTMDDFI 286 (307)
T ss_pred ---ccccceeeeeeeeccc---------ceeEE---eccCCceEEEEEeccceeeeeeccCCceeEEee-ecccCcccee
Confidence 2211 122333332 33444 899999999999999999988887764446777 8999998888
Q ss_pred eecCCcEEEEcC
Q 016032 329 SGSSRSIFIWRP 340 (396)
Q Consensus 329 sg~d~~i~iw~~ 340 (396)
++.++.+..|.-
T Consensus 287 ~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 287 TATGHGDLFWYQ 298 (307)
T ss_pred EecCCceeceee
Confidence 888788888854
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-37 Score=248.17 Aligned_cols=294 Identities=20% Similarity=0.226 Sum_probs=233.2
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee---eeEecCCcccceeEEEEecCCCcEEEEEeCCCe
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE---KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 88 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 88 (396)
..++|..|++.|+-+.||++| ++||+++.|.+..+|++..... ..++ .+|..+|..+.|+|+ .++|++|+.|..
T Consensus 216 t~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD-dryLlaCg~~e~ 292 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD-DRYLLACGFDEV 292 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC-CCeEEecCchHh
Confidence 357899999999999999999 7999999999999999876443 3333 689999999999999 999999999999
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
+.+||+.+|.....+... .+ ..+.+++|.|||..+++|+.|+.+..||+.....-. .... ....|.+++
T Consensus 293 ~~lwDv~tgd~~~~y~~~-~~-------~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~--W~gv-r~~~v~dla 361 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSG-LG-------FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN--WEGV-RDPKVHDLA 361 (519)
T ss_pred eeeccCCcchhhhhcccC-cC-------CCcceeEEccCCceeEecCCCCcEEEecCCcchhhc--cccc-ccceeEEEE
Confidence 999999999988776543 11 238899999999999999999999999998643211 0111 123699999
Q ss_pred eccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCccee
Q 016032 169 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 248 (396)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 248 (396)
..+ ++.++++.+.|..|++++..+...... .....+|++++.|.+++++++.-.+..+++||+...++......
T Consensus 362 it~-Dgk~vl~v~~d~~i~l~~~e~~~dr~l---ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~G-- 435 (519)
T KOG0293|consen 362 ITY-DGKYVLLVTVDKKIRLYNREARVDRGL---ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFG-- 435 (519)
T ss_pred EcC-CCcEEEEEecccceeeechhhhhhhcc---ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhc--
Confidence 999 999999999999999999865333222 24567899999999999999999999999999997665331110
Q ss_pred ecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCC-cEE
Q 016032 249 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD-DVL 327 (396)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l 327 (396)
.......++.+|.-.. ..+++ +|+.|+.|+||+..+|+++.++.+|. ..+.+| +|+|.. .++
T Consensus 436 ----hkq~~fiIrSCFgg~~--------~~fia---SGSED~kvyIWhr~sgkll~~LsGHs-~~vNcV-swNP~~p~m~ 498 (519)
T KOG0293|consen 436 ----HKQGHFIIRSCFGGGN--------DKFIA---SGSEDSKVYIWHRISGKLLAVLSGHS-KTVNCV-SWNPADPEMF 498 (519)
T ss_pred ----ccccceEEEeccCCCC--------cceEE---ecCCCceEEEEEccCCceeEeecCCc-ceeeEE-ecCCCCHHHh
Confidence 0111111233443321 35666 89999999999999999999999998 788888 899976 577
Q ss_pred Eeec-CCcEEEEcCCC
Q 016032 328 ASGS-SRSIFIWRPKE 342 (396)
Q Consensus 328 ~sg~-d~~i~iw~~~~ 342 (396)
|+|+ ||+||||.+..
T Consensus 499 ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPSD 514 (519)
T ss_pred hccCCCCeEEEecCCc
Confidence 8888 89999998764
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5e-36 Score=246.60 Aligned_cols=311 Identities=14% Similarity=0.238 Sum_probs=242.1
Q ss_pred CCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEec--CCcccceeEEEEecCCCcEEEEEeC
Q 016032 8 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAASS 85 (396)
Q Consensus 8 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~ 85 (396)
|+.+...+++.|..-|.|+.|+||| .++||.+.||.|.+||=.+++.+..+. .+|.+.|.+++|+|+ +..|++++.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD-s~~~~T~Sa 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD-STQFLTVSA 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC-CceEEEecC
Confidence 4455567888999999999999999 589999999999999999998887774 489999999999999 999999999
Q ss_pred CCeEEEEECCCCcccceeecCCCC----------------------------------CCCCCcceeeeEEEeCCCCCEE
Q 016032 86 DGTVSCTDLETGLALSLMNVNPNG----------------------------------WHGPRTWRMLYGMDINPEKGVV 131 (396)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~v~~~~~~~~~~~l 131 (396)
|.+++|||+.+.+++.++.....- .....+...|+++..++++.+|
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 999999999998777665443220 0012344569999999999999
Q ss_pred EEEecCCeEEEEeCCCCCCCccc-------ee---------------------e--------------------------
Q 016032 132 LVADNFGFLYLVDARTNSRSGEA-------IL---------------------I-------------------------- 157 (396)
Q Consensus 132 ~~~~~~g~i~i~d~~~~~~~~~~-------~~---------------------~-------------------------- 157 (396)
++|+.||.|.-|+..++...... +. .
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS 415 (603)
T ss_pred EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence 99999999999998764321000 00 0
Q ss_pred ----------------e--------cCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEE
Q 016032 158 ----------------H--------RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAY 213 (396)
Q Consensus 158 ----------------~--------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~ 213 (396)
. .-.....+++++| ++..++.|+.|+.|++|.+.............|.++|++++
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 0 0011245678899 99999999999999999998655544445557999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceE
Q 016032 214 FSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPID 293 (396)
Q Consensus 214 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~ 293 (396)
|||++.+||++...+.+.+||+.+++. .+.+-..|. ....+++|+|+ ..+++ +|+.|-.|.
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHt------akI~~~aWsP~---------n~~vA---TGSlDt~Vi 555 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREV-KTNRWAFHT------AKINCVAWSPN---------NKLVA---TGSLDTNVI 555 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCce-ecceeeeee------eeEEEEEeCCC---------ceEEE---eccccceEE
Confidence 999999999999999999999998776 211111122 22348999999 67777 899999999
Q ss_pred EEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeecCCcEEEEcCC
Q 016032 294 FIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPK 341 (396)
Q Consensus 294 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~~ 341 (396)
||++......-.+.+.|...+..+ .|-.+..++-+|.|..|++|++.
T Consensus 556 iysv~kP~~~i~iknAH~~gVn~v-~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 556 IYSVKKPAKHIIIKNAHLGGVNSV-AWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEccChhhheEeccccccCceeE-EEecCceEEeccCcceeEEeccc
Confidence 999987655555666666778888 78666555444559999999874
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=267.91 Aligned_cols=295 Identities=22% Similarity=0.371 Sum_probs=236.3
Q ss_pred eeeeccc-cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce--eeeEecCCcccceeEEEEecCCCcEEEEEeCCCeE
Q 016032 13 CAVIRYH-SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 89 (396)
Q Consensus 13 ~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 89 (396)
...+.+| ...|.++.|+|+| ++|++++.|+.+++|+..... ....+ .+|...|..++|+|+ +.++++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d-~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD-GSYLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC-CcEEEEecCCceE
Confidence 4455554 8899999999999 579999999999999997666 34444 689999999999999 8999999999999
Q ss_pred EEEEC-CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 90 SCTDL-ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 90 ~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
++||+ ..+..+..+..+... |++++|+|+++++++|+.|+.|++||+++++... ....|...|++++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~---------v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTY---------VTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---KLKGHSDGISGLA 295 (456)
T ss_pred EEeeccCCCeEEEEecCCCCc---------eEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE---eeeccCCceEEEE
Confidence 99999 445777777655543 9999999999999999999999999999966543 4456666899999
Q ss_pred eccCCCCEEEEeeCCCcEEEEecCCCCCC--CccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcc
Q 016032 169 CNPIQPELLLSCGNDHFARIWDIRRLEAG--SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 246 (396)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 246 (396)
|++ ++++|++++.|+.|++||+.++... ..+.......++++++|+|++.+|++++.|+.+++||+..+........
T Consensus 296 f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 296 FSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred ECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 999 9999999999999999999876622 2222211111699999999999999999999999999998876443221
Q ss_pred eeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcE
Q 016032 247 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDV 326 (396)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (396)
. ... ..+.+++.. ...|.++. +|+.|+.|++|++.++..+..+.+|....+..+ +++|..++
T Consensus 375 ~----~~~-----~~~~~~~~~-----~~~~~~i~---sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~-~~~~~~~~ 436 (456)
T KOG0266|consen 375 H----SNL-----VRCIFSPTL-----STGGKLIY---SGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL-SSHPTENL 436 (456)
T ss_pred c----CCc-----ceeEecccc-----cCCCCeEE---EEeCCceEEEEeCCccchhhhhcCCCCCceecc-ccCCCcCe
Confidence 1 111 122222221 22277777 899999999999999999999999854666666 89999999
Q ss_pred EEeec---CCcEEEEcCC
Q 016032 327 LASGS---SRSIFIWRPK 341 (396)
Q Consensus 327 l~sg~---d~~i~iw~~~ 341 (396)
+++++ |+.|++|...
T Consensus 437 ~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 437 IASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eeecCcCCCceEEEecCC
Confidence 99976 8999999864
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.5e-37 Score=239.94 Aligned_cols=317 Identities=13% Similarity=0.118 Sum_probs=246.6
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
.+..|..|++.|.+++.+|+. ++++||+.|....||++.++.....+ .+|...|+++.|+.+ +.+|++|..+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd-gtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD-GTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC-ceEEEecCCCccEEE
Confidence 357899999999999999966 79999999999999999999866666 899999999999999 999999999999999
Q ss_pred EECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 92 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
|...++.....+...-. .+.=+.|+|.+..|++|+.||.+.+|.+...... .....|..++++-.|.|
T Consensus 133 ~~~stg~~~~~~~~e~~---------dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVE---------DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIP 200 (399)
T ss_pred EEcccCceEEEeecccC---------ceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccC
Confidence 99999988777642222 2777899999999999999999999999886332 24556777999999999
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecc
Q 016032 172 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 251 (396)
Q Consensus 172 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 251 (396)
+|..++++..||+|++|+..+.++...+..- ......++.++..+..++.|+.++.+++-+..+|+.+..........
T Consensus 201 -dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~-e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 201 -DGKRILTGYDDGTIIVWNPKTGQPLHKITQA-EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred -CCceEEEEecCceEEEEecCCCceeEEeccc-ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 9999999999999999999876553333321 24457788999999999999999999999998888754332100000
Q ss_pred cccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec
Q 016032 252 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 331 (396)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~ 331 (396)
........-++.+.|......++. .|+.||+|.|||+...++...+. |. ..|..+ .|-+ ..+|++++
T Consensus 279 ~~~~e~~~esve~~~~ss~lpL~A---------~G~vdG~i~iyD~a~~~~R~~c~-he-~~V~~l-~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLPLAA---------CGSVDGTIAIYDLAASTLRHICE-HE-DGVTKL-KWLN-TDYLLTAC 345 (399)
T ss_pred cccchhhhhhhhhcccccccchhh---------cccccceEEEEecccchhheecc-CC-CceEEE-EEcC-cchheeec
Confidence 000000011233334322222222 68999999999998777655443 33 557777 6888 67788877
Q ss_pred -CCcEEEEcCCCcceeeeccccceEEEe
Q 016032 332 -SRSIFIWRPKEKSELVEQKEEMKIIVC 358 (396)
Q Consensus 332 -d~~i~iw~~~~~~~~~~~~~~~~~~~~ 358 (396)
+|.|+.||..+|+++..+.+|...|.|
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGHQMGILD 373 (399)
T ss_pred cCceEEeeeccccceEEEEecCchheeE
Confidence 999999999999999999999876655
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-36 Score=246.71 Aligned_cols=277 Identities=19% Similarity=0.344 Sum_probs=231.6
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc
Q 016032 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 100 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 100 (396)
..|++++|+.+| .+||+|+.||.++||+..... ...+ ..|.++|.++.|+.. +++|++++.|+++.+||..+++..
T Consensus 236 kdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G~l-~~tl-~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNNDG-TLLATGSEDGEARIWNKDGNL-ISTL-GQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecCCC-CeEEEeecCcEEEEEecCchh-hhhh-hccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCceEE
Confidence 579999999999 699999999999999987643 3333 459999999999999 999999999999999999999998
Q ss_pred ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEe
Q 016032 101 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 180 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 180 (396)
..+.++..+ ...+.|-.+ ..+++.+.|+.|+++.+....+.... ..|.+.|.++.|+| .+.+|+++
T Consensus 312 q~f~~~s~~---------~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~---~GH~g~V~alk~n~-tg~LLaS~ 377 (524)
T KOG0273|consen 312 QQFEFHSAP---------ALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF---IGHHGEVNALKWNP-TGSLLASC 377 (524)
T ss_pred EeeeeccCC---------ccceEEecC-ceEeecCCCceEEEEEecCCCcceee---ecccCceEEEEECC-CCceEEEe
Confidence 888776553 355667544 45889999999999999887665533 33667999999999 99999999
Q ss_pred eCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCC---------CEEEEEeCCCcEEEEEcccccccCCCcceeecc
Q 016032 181 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG---------SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 251 (396)
Q Consensus 181 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 251 (396)
+.|++++||.+........++ .|...|..+.|+|.| ..+++++.|++|++||+..+.++ +
T Consensus 378 SdD~TlkiWs~~~~~~~~~l~--~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i---------~ 446 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDLQ--AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI---------H 446 (524)
T ss_pred cCCCeeEeeecCCCcchhhhh--hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee---------E
Confidence 999999999987654444443 689999999999954 46899999999999999988763 3
Q ss_pred cccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEee
Q 016032 252 DFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 330 (396)
Q Consensus 252 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg 330 (396)
.+.+|..+ +.++|+|+ |+|++ +|+.||.|.+|+++++++.+.+.+. ..|..+ +|+.+|.+|..+
T Consensus 447 ~f~kH~~pVysvafS~~---------g~ylA---sGs~dg~V~iws~~~~~l~~s~~~~--~~Ifel-~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSPN---------GRYLA---SGSLDGCVHIWSTKTGKLVKSYQGT--GGIFEL-CWNAAGDKLGAC 511 (524)
T ss_pred eeccCCCceEEEEecCC---------CcEEE---ecCCCCeeEeccccchheeEeecCC--CeEEEE-EEcCCCCEEEEE
Confidence 45455544 67999999 99999 9999999999999999999988766 446777 899999888876
Q ss_pred c-CCcEEEEcCC
Q 016032 331 S-SRSIFIWRPK 341 (396)
Q Consensus 331 ~-d~~i~iw~~~ 341 (396)
- |+.+++-|+.
T Consensus 512 ~sd~~vcvldlr 523 (524)
T KOG0273|consen 512 ASDGSVCVLDLR 523 (524)
T ss_pred ecCCCceEEEec
Confidence 6 9999998864
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.8e-36 Score=252.23 Aligned_cols=287 Identities=23% Similarity=0.385 Sum_probs=232.8
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEE
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 92 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 92 (396)
++++++|.++|++++|+|++ .+|++++.||.|++|++.+....... ..|...+..+.|+|+ +..+++++.+|.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD-GTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC-CCEEEEEcCCCeEEEE
Confidence 45788999999999999998 68999999999999999987655555 678899999999999 7899999999999999
Q ss_pred ECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC
Q 016032 93 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 172 (396)
++.+++....+..+.. .+.++.|++++.++++++.++.+.+||+.+.+... ....+...+.+++|+|
T Consensus 79 ~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~- 145 (289)
T cd00200 79 DLETGECVRTLTGHTS---------YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---TLRGHTDWVNSVAFSP- 145 (289)
T ss_pred EcCcccceEEEeccCC---------cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE---EeccCCCcEEEEEEcC-
Confidence 9998776666653332 38999999998888888889999999998654432 2234556799999999
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccc
Q 016032 173 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 252 (396)
++.++++++.++.|++||+++.+....+. .|...+.++.|+|+++.+++++.++.|++||+++++......
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------- 216 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR------- 216 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-------
Confidence 78888888889999999998655443333 577789999999999999999999999999998766533221
Q ss_pred ccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-
Q 016032 253 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS- 331 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~- 331 (396)
........+.|+|+ +.+++ +++.++.|++|++.+++.+..+..+. ..+.++ +|+|++.+|++++
T Consensus 217 -~~~~~i~~~~~~~~---------~~~~~---~~~~~~~i~i~~~~~~~~~~~~~~~~-~~i~~~-~~~~~~~~l~~~~~ 281 (289)
T cd00200 217 -GHENGVNSVAFSPD---------GYLLA---SGSEDGTIRVWDLRTGECVQTLSGHT-NSVTSL-AWSPDGKRLASGSA 281 (289)
T ss_pred -hcCCceEEEEEcCC---------CcEEE---EEcCCCcEEEEEcCCceeEEEccccC-CcEEEE-EECCCCCEEEEecC
Confidence 01113346788887 55555 55679999999999988888887554 677777 8999999999999
Q ss_pred CCcEEEEc
Q 016032 332 SRSIFIWR 339 (396)
Q Consensus 332 d~~i~iw~ 339 (396)
|+.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 99999996
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-37 Score=260.78 Aligned_cols=323 Identities=18% Similarity=0.241 Sum_probs=242.9
Q ss_pred CCCCCCccceeeecc-ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC-CcEEE
Q 016032 4 AHVIPDQVNCAVIRY-HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DGTVY 81 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~ 81 (396)
.|.++.+..++.+++ |++||.-++|+|.+ .+|++|+.||.++|||+..+.+...+ .+|.+.|.++.|+|+. ...|+
T Consensus 88 v~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~ 165 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLA 165 (775)
T ss_pred EEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhhee
Confidence 588999999999999 99999999999999 79999999999999999999988888 8999999999999983 23578
Q ss_pred EEeCCCeEEEEECCCCcc-cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCC------------
Q 016032 82 AASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN------------ 148 (396)
Q Consensus 82 s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~------------ 148 (396)
+|..|+++++||+++... +..+..+.. .++++++++++..++++++|..+.+||+.+.
T Consensus 166 sg~~D~~v~vwnl~~~~tcl~~~~~H~S---------~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~ 236 (775)
T KOG0319|consen 166 SGATDGTVRVWNLNDKRTCLHTMILHKS---------AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESL 236 (775)
T ss_pred ecCCCceEEEEEcccCchHHHHHHhhhh---------heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhe
Confidence 999999999999996544 544443332 2666666666666666666666666665321
Q ss_pred ----------------------------------CCCccc----------------------------------------
Q 016032 149 ----------------------------------SRSGEA---------------------------------------- 154 (396)
Q Consensus 149 ----------------------------------~~~~~~---------------------------------------- 154 (396)
......
T Consensus 237 E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~ 316 (775)
T KOG0319|consen 237 ESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIV 316 (775)
T ss_pred eeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEe
Confidence 100000
Q ss_pred ------------------------------------------eeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecC
Q 016032 155 ------------------------------------------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 192 (396)
Q Consensus 155 ------------------------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 192 (396)
...+.|...|.++.... .+.+|++|+.|.++++|.++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEec
Confidence 00112333455666333 56799999999999999984
Q ss_pred CCCCCC-cccc-CCCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCccee---ecccccccCCceeEEeCC
Q 016032 193 RLEAGS-SLCD-LPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIV---HSHDFNRHLTPFRAEWDP 266 (396)
Q Consensus 193 ~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 266 (396)
+..... ++.. .+|.+.|.+++++. .-.+|+++|.|.++++|++...+...+...+. ........+ -+++.+|
T Consensus 396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI--N~Vaia~ 473 (775)
T KOG0319|consen 396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI--NCVAIAP 473 (775)
T ss_pred CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc--cceEecC
Confidence 433221 1221 27999999999987 44578999999999999998633322211110 111111112 2567777
Q ss_pred CCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcce
Q 016032 267 KDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE 345 (396)
Q Consensus 267 ~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~ 345 (396)
+ ..+++ +|+.|.+.+||++++.+...++.+|. ..+.++ .|+|..+.|+|+| |++|+||.+.+..+
T Consensus 474 n---------dkLiA---T~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V-~Fs~~dq~laT~SgD~TvKIW~is~fSC 539 (775)
T KOG0319|consen 474 N---------DKLIA---TGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCV-SFSKNDQLLATCSGDKTVKIWSISTFSC 539 (775)
T ss_pred C---------CceEE---ecccccceeeecccCceEEEEeeCCc-cceEEE-EeccccceeEeccCCceEEEEEecccee
Confidence 6 67777 89999999999999999999999988 889999 9999999999999 99999999999999
Q ss_pred eeeccccce
Q 016032 346 LVEQKEEMK 354 (396)
Q Consensus 346 ~~~~~~~~~ 354 (396)
++++.+|..
T Consensus 540 lkT~eGH~~ 548 (775)
T KOG0319|consen 540 LKTFEGHTS 548 (775)
T ss_pred eeeecCccc
Confidence 999998875
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-36 Score=257.74 Aligned_cols=315 Identities=18% Similarity=0.269 Sum_probs=246.3
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
|.-+...-+-..+||...++|++++||| +++|||+.||.|+|||...+-+..++ ..|+..|+.+.|+.. ++.+++++
T Consensus 335 weWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~-g~~llssS 411 (893)
T KOG0291|consen 335 WEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTAR-GNVLLSSS 411 (893)
T ss_pred EEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEec-CCEEEEee
Confidence 4444444456678999999999999999 68999999999999999999999998 679999999999999 99999999
Q ss_pred CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC-eEEEEeCCCCCCCccceeeecCCcc
Q 016032 85 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-FLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
.||+|+.||+......+++..+.. ....|++..|.|..+.+|+.|. .|++|++++++.+. ...+|.++
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p--------~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---iLsGHEgP 480 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEP--------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---ILSGHEGP 480 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCc--------eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---hhcCCCCc
Confidence 999999999999999888876654 2388999999999999999887 79999999988764 34567779
Q ss_pred EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCC
Q 016032 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 243 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 243 (396)
|.+++|+| .+..|++++.|.+|++||+-.. ......+.+...+..++|+|+|+.|++++.||.|.+||...+.....
T Consensus 481 Vs~l~f~~-~~~~LaS~SWDkTVRiW~if~s--~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 481 VSGLSFSP-DGSLLASGSWDKTVRIWDIFSS--SGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred ceeeEEcc-ccCeEEeccccceEEEEEeecc--CceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc
Confidence 99999999 9999999999999999998642 22344456778899999999999999999999999999987765432
Q ss_pred Cccee------------ecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCC-
Q 016032 244 SREIV------------HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN- 310 (396)
Q Consensus 244 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~- 310 (396)
..... ....-........+.|+++ |.++. +|+..+.|++|++.++-+++.++-..
T Consensus 558 IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD---------G~~Il---AgG~sn~iCiY~v~~~vllkkfqiS~N 625 (893)
T KOG0291|consen 558 IDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD---------GKCIL---AGGESNSICIYDVPEGVLLKKFQISDN 625 (893)
T ss_pred ccchhhccccccccceeehhhcccCCceEEEEEcCC---------CCEEE---ecCCcccEEEEECchhheeeeEEeccc
Confidence 21111 0000011112235777777 88888 78999999999998776555432000
Q ss_pred ------------------------------------------------------CCCCcceeeeccCCcEEEeecCCcEE
Q 016032 311 ------------------------------------------------------ITTISPVNKLHPRDDVLASGSSRSIF 336 (396)
Q Consensus 311 ------------------------------------------------------~~~i~~~~~~~~~~~~l~sg~d~~i~ 336 (396)
.-.+..+ .|+|.|+.+|.++-..|.
T Consensus 626 ~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv-~fsPtgraFAaatTEGl~ 704 (893)
T KOG0291|consen 626 RSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSV-QFSPTGRAFAAATTEGLL 704 (893)
T ss_pred cchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEE-EECCCcCeeeeecccceE
Confidence 0012334 689999999988855577
Q ss_pred EEcCCCcceeeec
Q 016032 337 IWRPKEKSELVEQ 349 (396)
Q Consensus 337 iw~~~~~~~~~~~ 349 (396)
||.+.+.-....+
T Consensus 705 IYsld~~~~FDPf 717 (893)
T KOG0291|consen 705 IYSLDTTILFDPF 717 (893)
T ss_pred EEecCCceEEccc
Confidence 8887766544333
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.1e-37 Score=263.47 Aligned_cols=252 Identities=22% Similarity=0.289 Sum_probs=209.9
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce------------------------------eeeEecC
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS------------------------------EKIVYGN 61 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------------------~~~~~~~ 61 (396)
+..++..-...++|..|++++ .+||.|-.|..|++|.+...+ .......
T Consensus 370 c~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 444555556689999999999 699999999999999987311 0111235
Q ss_pred CcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEE
Q 016032 62 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 141 (396)
Q Consensus 62 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 141 (396)
+|.++|....|+|+ .++|++++.|+++|+|.+.+..++..+..+..+ |..+.|+|.|-++|+++.|++-+
T Consensus 449 GH~GPVyg~sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P---------VwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP---------VWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred cCCCceeeeeeccc-ccceeeccCCcceeeeecccceeEEEecCCCcc---------eeeEEecCCceEEEecCCCceee
Confidence 89999999999999 999999999999999999999988877654433 99999999999999999999999
Q ss_pred EEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEE
Q 016032 142 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 221 (396)
Q Consensus 142 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 221 (396)
+|......... ....|-+.+.|+.|+| +.+++++||.|.+|++||+.++...+.+ .+|.++|.+++|||+|++|
T Consensus 519 LWs~d~~~PlR---ifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF--~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 519 LWSTDHNKPLR---IFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIF--TGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred eeecccCCchh---hhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEe--cCCCCceEEEEEcCCCceE
Confidence 99988855443 3345556899999999 9999999999999999999876553333 2799999999999999999
Q ss_pred EEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccc
Q 016032 222 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 301 (396)
Q Consensus 222 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~ 301 (396)
++|+.||.|.+||+.+ ++
T Consensus 593 aSg~ed~~I~iWDl~~--------------------------------------------------------------~~ 610 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLAN--------------------------------------------------------------GS 610 (707)
T ss_pred eecccCCcEEEEEcCC--------------------------------------------------------------Cc
Confidence 9999999888888753 45
Q ss_pred hhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcc
Q 016032 302 LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 344 (396)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~ 344 (396)
++..+.+| .+.+.++ .|+.+|..||+|+ |.+|++||+....
T Consensus 611 ~v~~l~~H-t~ti~Sl-sFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 611 LVKQLKGH-TGTIYSL-SFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred chhhhhcc-cCceeEE-EEecCCCEEEecCCCCeEEEEEchhhc
Confidence 56677777 4888888 8999999999999 9999999986544
No 30
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=232.99 Aligned_cols=308 Identities=17% Similarity=0.213 Sum_probs=236.8
Q ss_pred CCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccc-----------------ceeeeEecCCcccceeEE
Q 016032 8 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-----------------VSEKIVYGNIHSCIVNNI 70 (396)
Q Consensus 8 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------------~~~~~~~~~~~~~~v~~~ 70 (396)
|..-+...+..|++++.+.+|+||| .++|||+.|..|+|.|++. ..++...+..|..+|+++
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 3344556788999999999999999 6999999999999999862 112233335799999999
Q ss_pred EEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCC
Q 016032 71 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR 150 (396)
Q Consensus 71 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~ 150 (396)
.|+|. ...|++++.|++|++||+......+.++.-.+. .++.++.|+|.|.+|++|.....+++||+.+.++
T Consensus 179 ~FHPr-e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~-------~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 179 DFHPR-ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDT-------EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred eecch-hheEEeccCCCeEEEEecccHHHHHHHHHhhcc-------ceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence 99999 999999999999999999876655544432222 3499999999999999999999999999999877
Q ss_pred CccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcE
Q 016032 151 SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 230 (396)
Q Consensus 151 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 230 (396)
........+|.+.|+++.+++ .+++.++++.||.|++||--+..+...+..-.....|.+..|..+|+++++.+.|..+
T Consensus 251 fvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred eeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 665555667778999999999 9999999999999999998765554444433345679999999999999999999999
Q ss_pred EEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCC
Q 016032 231 RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 310 (396)
Q Consensus 231 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~ 310 (396)
++|.+.+++.+.......... +........|+.. ..|+.. ---..+.+.-||.+++..+..+...|
T Consensus 330 kLWEi~t~R~l~~YtGAg~tg---rq~~rtqAvFNht---------EdyVl~--pDEas~slcsWdaRtadr~~l~slgH 395 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTG---RQKHRTQAVFNHT---------EDYVLF--PDEASNSLCSWDARTADRVALLSLGH 395 (430)
T ss_pred eeeeecCCceEEEEecCCccc---chhhhhhhhhcCc---------cceEEc--cccccCceeeccccchhhhhhcccCC
Confidence 999999998754322111100 0001112344443 222221 12234568899999998888777666
Q ss_pred CCCCcceeeeccCCcEEEeec-CCcEEEEcC
Q 016032 311 ITTISPVNKLHPRDDVLASGS-SRSIFIWRP 340 (396)
Q Consensus 311 ~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~ 340 (396)
.+.+..+ .-+|.+..+.+|+ |-.+|+|--
T Consensus 396 n~a~R~i-~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 396 NGAVRWI-VHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CCCceEE-EeCCCCCceeeecccceeeeeee
Confidence 5777766 6899999999999 999999964
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=225.64 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=224.3
Q ss_pred EecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC
Q 016032 58 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 137 (396)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 137 (396)
..+++|.+.|.++.|+++ .+.+++++.||.+.|||.-+....+.+..+.. | |..++|+|.++++++|+-|
T Consensus 49 r~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~haipl~s~-------W--VMtCA~sPSg~~VAcGGLd 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-------W--VMTCAYSPSGNFVACGGLD 118 (343)
T ss_pred EEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEEecCce-------e--EEEEEECCCCCeEEecCcC
Confidence 344899999999999999 99999999999999999999888887765432 2 9999999999999999999
Q ss_pred CeEEEEeCCCCCCC---ccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEE
Q 016032 138 GFLYLVDARTNSRS---GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 214 (396)
Q Consensus 138 g~i~i~d~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~ 214 (396)
+...||++.+.... ........|.+.+.+..|.+ ...|++++.|.+..+||+.+++....+ .+|.+.|.++.+
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f--~GH~gDV~slsl 194 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVF--HGHTGDVMSLSL 194 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEe--cCCcccEEEEec
Confidence 99999999864211 22223566777999999985 677999999999999999876553333 289999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccce
Q 016032 215 SP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPI 292 (396)
Q Consensus 215 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i 292 (396)
+| +++.+++|+.|+..++||++.+.+.+ .|.+|... -.+.|.|+ |.-++ +|+.|++.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~q---------tF~ghesDINsv~ffP~---------G~afa---tGSDD~tc 253 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQ---------TFEGHESDINSVRFFPS---------GDAFA---TGSDDATC 253 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeE---------eecccccccceEEEccC---------CCeee---ecCCCcee
Confidence 99 99999999999999999999887643 33333332 36889998 76677 89999999
Q ss_pred EEEEcCccchhhhhcCCC-CCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEeecC
Q 016032 293 DFIDITTGQLVAEVMDPN-ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKA 361 (396)
Q Consensus 293 ~vwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 361 (396)
++||++..+.+..+.... ...++++ +||..|++|.+|. |.++.+||.-.++.+..+.+|...|.|-+.
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv-~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSV-AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV 323 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeE-EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE
Confidence 999999998888776432 3567777 8999999999988 999999999999999999999999888543
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-35 Score=249.76 Aligned_cols=310 Identities=16% Similarity=0.234 Sum_probs=258.0
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
+.+..|++.|.++.|+|..+ +++++-.+|.|.||+.++...+..+ .-...||++..|-+. .+++++|+.|..|++|+
T Consensus 7 rk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR-knWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR-KNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec-cceEEEecCCceEEEEe
Confidence 45667999999999999995 7888889999999999998888877 457789999999998 99999999999999999
Q ss_pred CCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCC
Q 016032 94 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 173 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 173 (396)
..+++.+..+..+++- |.+++.+|...++++++.|-.|++||-+..-...+....|.| .|.+++|+|.+
T Consensus 84 ynt~ekV~~FeAH~Dy---------IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H--yVMqv~fnPkD 152 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDY---------IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH--YVMQVAFNPKD 152 (794)
T ss_pred cccceeeEEeeccccc---------eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce--EEEEEEecCCC
Confidence 9999999999877654 999999999999999999999999999887666555556666 89999999999
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC--CCCEEEEEeCCCcEEEEEcccccccCCCcceeecc
Q 016032 174 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 251 (396)
Q Consensus 174 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 251 (396)
.+.+++++-|++|++|.+.+..+...+ .+|...|+|+.|-+ +..+|++|+.|.+|+|||..+..+++++.
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~nfTl--~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe------ 224 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPNFTL--EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE------ 224 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCceee--eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh------
Confidence 999999999999999999765443333 38999999999998 55799999999999999999988865443
Q ss_pred cccccCCce-eEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEee
Q 016032 252 DFNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 330 (396)
Q Consensus 252 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg 330 (396)
+|...+ .+.|+|. =.+++ +|+.||+++||+..+-++..++.-.- ..+.++ +-.+.++.++.|
T Consensus 225 ---GHt~Nvs~v~fhp~---------lpiii---sgsEDGTvriWhs~Ty~lE~tLn~gl-eRvW~I-~~~k~~~~i~vG 287 (794)
T KOG0276|consen 225 ---GHTNNVSFVFFHPE---------LPIII---SGSEDGTVRIWNSKTYKLEKTLNYGL-ERVWCI-AAHKGDGKIAVG 287 (794)
T ss_pred ---cccccceEEEecCC---------CcEEE---EecCCccEEEecCcceehhhhhhcCC-ceEEEE-eecCCCCeEEEe
Confidence 222222 5677776 22333 79999999999999888887776554 778887 677888889999
Q ss_pred cCCcEEEEcCCCcceeeeccccceEEEeecCC
Q 016032 331 SSRSIFIWRPKEKSELVEQKEEMKIIVCGKAD 362 (396)
Q Consensus 331 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 362 (396)
.|....+..+...++...+....+++......
T Consensus 288 ~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~e 319 (794)
T KOG0276|consen 288 FDEGSVTVKLGREEPAVSMDSNGKIIWAVHSE 319 (794)
T ss_pred ccCCcEEEEccCCCCceeecCCccEEEEcCce
Confidence 97666677888888888888777776654443
No 33
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-35 Score=240.24 Aligned_cols=310 Identities=19% Similarity=0.308 Sum_probs=243.5
Q ss_pred CccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCe
Q 016032 9 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 88 (396)
Q Consensus 9 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 88 (396)
.+..+..+.||...|++++|-|..+..++||+.|++|.+|+=..-+....+ ..|..-|+|+.|+|+ +.++++++.||.
T Consensus 136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPD-G~~Fat~gsDgk 213 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPD-GSRFATAGSDGK 213 (603)
T ss_pred CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCC-CCeEEEecCCcc
Confidence 444566789999999999999999888999999999999986655555555 679999999999999 999999999999
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccc--------------
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA-------------- 154 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~-------------- 154 (396)
+.+||-.+++.+..+... ..+...|.+++|+||+..+++++.|.++++||+.+.+...+.
T Consensus 214 i~iyDGktge~vg~l~~~------~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDS------DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred EEEEcCCCccEEEEecCC------CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 999999999999888631 122244999999999999999999999999999875432111
Q ss_pred --------------------------eeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCc---------
Q 016032 155 --------------------------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS--------- 199 (396)
Q Consensus 155 --------------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~--------- 199 (396)
.....|...|+++..+| ++.+|++|+.||.|.-|+..++...+.
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 11224556799999999 899999999999999999764321000
Q ss_pred --------------------------------------------ccc-----------------C---------CCCCce
Q 016032 200 --------------------------------------------LCD-----------------L---------PHKRVV 209 (396)
Q Consensus 200 --------------------------------------------~~~-----------------~---------~~~~~i 209 (396)
+.. + ...-..
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~ 446 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES 446 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence 000 0 001134
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccc
Q 016032 210 NSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL 289 (396)
Q Consensus 210 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d 289 (396)
.+++++|++..+++|+.|+.|++|.+..+.+....... .....+..++|+|+ +.|++ +|...
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~------~h~a~iT~vaySpd---------~~yla---~~Da~ 508 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL------EHRAAITDVAYSPD---------GAYLA---AGDAS 508 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee------cccCCceEEEECCC---------CcEEE---EeccC
Confidence 57889999999999999999999999876653221111 11122347899999 99999 78899
Q ss_pred cceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCccee
Q 016032 290 HPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 346 (396)
Q Consensus 290 ~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~ 346 (396)
+.+.+||..+.+.......-|...|.++ +|+|+..++|+|+ |-.|.||+++.....
T Consensus 509 rkvv~yd~~s~~~~~~~w~FHtakI~~~-aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 509 RKVVLYDVASREVKTNRWAFHTAKINCV-AWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred CcEEEEEcccCceecceeeeeeeeEEEE-EeCCCceEEEeccccceEEEEEccChhhh
Confidence 9999999999888555555455889999 9999999999999 999999999876543
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-37 Score=239.75 Aligned_cols=276 Identities=19% Similarity=0.289 Sum_probs=228.6
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
.+|..+|+.+-|+|. ...+++++.|++|++||..+++....++.+... +..++|+..|+++++++.|-.+
T Consensus 105 ~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s---------v~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDS---------VFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred hccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccc---------eeEEEEecCccEEEecCCccch
Confidence 569999999999999 889999999999999999999998777665543 9999999999999999999999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCC
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGS 219 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 219 (396)
.+||..+.....+....+.+ .|.+++|-| .++++++++.|.+|+.|++.++-. +..+ +|...|..+..+.||.
T Consensus 175 ~LWd~~~~~~c~ks~~gh~h--~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c---v~t~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLIGHEH--GVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC---VKTFPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred hheeHHHHHHHHHHhcCccc--ceeeEEEEe-cCCeeeecccccceeEEeccccee---EEeccCchHhEEEEEecCCee
Confidence 99999875333333344444 799999999 899999999999999999987554 4444 7889999999999999
Q ss_pred EEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceee------EeeeeeeecccccccceE
Q 016032 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV------IGRYISENYNGAALHPID 293 (396)
Q Consensus 220 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~g~~d~~i~ 293 (396)
++|+++.|.+|++|-+.++++....+...+... +++|.|......+.. .|+++. +++.|++|+
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE--------ci~wap~~~~~~i~~at~~~~~~~~l~---s~SrDktIk 317 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHEHPVE--------CIAWAPESSYPSISEATGSTNGGQVLG---SGSRDKTIK 317 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccccceE--------EEEecccccCcchhhccCCCCCccEEE---eecccceEE
Confidence 999999999999999999866544433222221 566666543221111 235777 899999999
Q ss_pred EEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEeecCCCcc
Q 016032 294 FIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQ 365 (396)
Q Consensus 294 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (396)
+||+.+|.++.++.+|. ..|..+ +|+|.|+||+++. |+++++||++++++...+..|..+++|-......
T Consensus 318 ~wdv~tg~cL~tL~ghd-nwVr~~-af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~ 388 (406)
T KOG0295|consen 318 IWDVSTGMCLFTLVGHD-NWVRGV-AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA 388 (406)
T ss_pred EEeccCCeEEEEEeccc-ceeeee-EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCC
Confidence 99999999999999987 889998 8999999999998 9999999999999999999999998886655443
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.2e-36 Score=259.47 Aligned_cols=212 Identities=22% Similarity=0.278 Sum_probs=190.8
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeE
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 89 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 89 (396)
......+-||+++|..+.|+|+. ++|++++.|+++|+|.+.+....... .+|..||..+.|+|. +-+|+|++.|++-
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~-GyYFatas~D~tA 517 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR-GYYFATASHDQTA 517 (707)
T ss_pred CceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC-ceEEEecCCCcee
Confidence 34456799999999999999998 79999999999999999999998888 699999999999999 9999999999999
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEe
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 169 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 169 (396)
++|......+.+.+..+... +.|+.|+|+..++++|+.|.++++||+.++.... .+.+|.++|.+++|
T Consensus 518 rLWs~d~~~PlRifaghlsD---------V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSD---------VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAF 585 (707)
T ss_pred eeeecccCCchhhhcccccc---------cceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEE
Confidence 99999998888888665544 9999999999999999999999999999987653 45667789999999
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 170 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
+| +|.+|++|+.||.|.+||+.++.....+ .+|.+.|.++.|+.+|..||+|+.|.+|++||+..-.
T Consensus 586 Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 586 SP-CGRYLASGDEDGLIKIWDLANGSLVKQL--KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cC-CCceEeecccCCcEEEEEcCCCcchhhh--hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99 9999999999999999999876553333 3689999999999999999999999999999997543
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=232.38 Aligned_cols=299 Identities=16% Similarity=0.152 Sum_probs=238.4
Q ss_pred CCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEE
Q 016032 4 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 83 (396)
.|.+.++.....+.+|++.|+|+.|+.+| .+||||+.+|.|+||...++.....+. .....+.-+.|+|. +..|++|
T Consensus 90 lW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~-a~illAG 166 (399)
T KOG0296|consen 90 LWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPR-AHILLAG 166 (399)
T ss_pred EEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEeccc-ccEEEee
Confidence 58888999999999999999999999999 799999999999999999988777773 45677889999998 9999999
Q ss_pred eCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 84 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
+.||.+.+|.+.++.....+..+... +++=.|.|+|+.++++..||+|++|++.++.+........ +..
T Consensus 167 ~~DGsvWmw~ip~~~~~kv~~Gh~~~---------ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~ 235 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQALCKVMSGHNSP---------CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLE 235 (399)
T ss_pred cCCCcEEEEECCCcceeeEecCCCCC---------cccccccCCCceEEEEecCceEEEEecCCCceeEEecccc--cCc
Confidence 99999999999987666666544332 7888899999999999999999999999987665432222 335
Q ss_pred EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccc------cCCCCCceeEEEEcC---CCCEEEEEeCCCcEEEEE
Q 016032 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC------DLPHKRVVNSAYFSP---SGSKILTTSQDNRLRIWD 234 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd 234 (396)
..++.++. .+..++.|+.++.+++-+..+++...+.. ...+...+.++.+.| .-.+.|+|+.||+|.|||
T Consensus 236 ~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD 314 (399)
T KOG0296|consen 236 LPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYD 314 (399)
T ss_pred CCcccccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEe
Confidence 77788887 88889999999888888766544322221 113444455555544 666789999999999999
Q ss_pred cccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCC
Q 016032 235 SIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTI 314 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i 314 (396)
+....+. +........+++.|-+. .|++ +++.+|.|+.||.++|+++.++.+|. ..|
T Consensus 315 ~a~~~~R---------~~c~he~~V~~l~w~~t----------~~l~---t~c~~g~v~~wDaRtG~l~~~y~GH~-~~I 371 (399)
T KOG0296|consen 315 LAASTLR---------HICEHEDGVTKLKWLNT----------DYLL---TACANGKVRQWDARTGQLKFTYTGHQ-MGI 371 (399)
T ss_pred cccchhh---------eeccCCCceEEEEEcCc----------chhe---eeccCceEEeeeccccceEEEEecCc-hhe
Confidence 9876542 12222222456777762 3444 68999999999999999999999998 788
Q ss_pred cceeeeccCCcEEEeec-CCcEEEEcCC
Q 016032 315 SPVNKLHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 315 ~~~~~~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
... +++|+.++++|++ |++.+|+++.
T Consensus 372 l~f-~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 372 LDF-ALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEE-EEcCCCcEEEEecCCCeEEEEecC
Confidence 888 8999999999999 9999999864
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-34 Score=272.75 Aligned_cols=291 Identities=15% Similarity=0.188 Sum_probs=218.4
Q ss_pred eccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce--------eeeEecCCcccceeEEEEecCCCcEEEEEeCCC
Q 016032 16 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG 87 (396)
Q Consensus 16 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 87 (396)
+..|.+.|.+++|+|++ .+||+|+.|+.|+||++.... ....+ .+...|.+++|+|..+.+|++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEeCCC
Confidence 45599999999999999 689999999999999975421 11122 24568999999986578999999999
Q ss_pred eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCC-CCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEE
Q 016032 88 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 166 (396)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 166 (396)
+|++||+.+++.+..+..+.. .|.+++|+| ++.+|++|+.||.|++||++++...... . ....+.+
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~---------~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~---~-~~~~v~~ 622 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEK---------RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI---K-TKANICC 622 (793)
T ss_pred eEEEEECCCCeEEEEecCCCC---------CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE---e-cCCCeEE
Confidence 999999999887777654433 299999997 7899999999999999999886554322 2 2347899
Q ss_pred EEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcc
Q 016032 167 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSRE 246 (396)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 246 (396)
+.|++.++.+|++|+.|+.|++||+++.... .....+|...|.++.|. ++.+|++++.|+.|++||++.+...... .
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~-~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~-~ 699 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLP-LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINE-T 699 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCcc-ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCC-c
Confidence 9996647999999999999999999864321 11223788999999997 6789999999999999999754210000 0
Q ss_pred eeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhc------------CCCCCC
Q 016032 247 IVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM------------DPNITT 313 (396)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~------------~~~~~~ 313 (396)
. ...+.++... ..+.|+|+ +.+++ +|+.|+.|++|+......+..+. .++...
T Consensus 700 ~--l~~~~gh~~~i~~v~~s~~---------~~~la---sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 700 P--LHSFMGHTNVKNFVGLSVS---------DGYIA---TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred c--eEEEcCCCCCeeEEEEcCC---------CCEEE---EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 0 1112222222 35677877 77787 89999999999986554332211 122244
Q ss_pred CcceeeeccCCcEEEeec-CCcEEEEcC
Q 016032 314 ISPVNKLHPRDDVLASGS-SRSIFIWRP 340 (396)
Q Consensus 314 i~~~~~~~~~~~~l~sg~-d~~i~iw~~ 340 (396)
+.++ +|+|++..|++|+ ||.|+||++
T Consensus 766 V~~v-~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSV-CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEE-EEcCCCCeEEEecCCCcEEEEec
Confidence 6677 8999999999999 999999986
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-36 Score=240.34 Aligned_cols=247 Identities=20% Similarity=0.330 Sum_probs=206.1
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
..+++|..+|.++.|++++ .++++|+.+|.|++|+..-....... ..|...|++++|+|+ ...|++++.||+|+|||
T Consensus 132 tilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnnVk~~~-ahh~eaIRdlafSpn-DskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNNVKIIQ-AHHAEAIRDLAFSPN-DSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchhhhHHhh-HhhhhhhheeccCCC-CceeEEecCCCeEEEEe
Confidence 4578899999999999999 68999999999999998765444333 446699999999998 99999999999999999
Q ss_pred CCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCC
Q 016032 94 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 173 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 173 (396)
....+....+..+.-. |.+++|+|...++++++.|..|++||.+++.++. ..+.|...|..+.|+| +
T Consensus 209 f~~~kee~vL~GHgwd---------VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tlh~HKntVl~~~f~~-n 275 (464)
T KOG0284|consen 209 FRMPKEERVLRGHGWD---------VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TLHGHKNTVLAVKFNP-N 275 (464)
T ss_pred ccCCchhheeccCCCC---------cceeccCCccceeEEccCCceeEeecCCCcchhh---hhhhccceEEEEEEcC-C
Confidence 9988777776544332 9999999999999999999999999999998775 4466777899999999 8
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCcceeeccc
Q 016032 174 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252 (396)
Q Consensus 174 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 252 (396)
+++|++++.|..++++|+++++....+ .+|...|+++.|+| ...+|.+|+.||.|..|.+...+. . ....
T Consensus 276 ~N~Llt~skD~~~kv~DiR~mkEl~~~--r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p---~----~~i~ 346 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRTMKELFTY--RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP---L----GEIP 346 (464)
T ss_pred CCeeEEccCCceEEEEehhHhHHHHHh--hcchhhheeeccccccccceeeccCCCceEEEecccccc---c----cCCC
Confidence 899999999999999999965543322 36999999999999 778899999999999999873222 1 1222
Q ss_pred ccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 253 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
.........++|+|- |.+++ +|+.|.++++|.-
T Consensus 347 ~AHd~~iwsl~~hPl---------Ghil~---tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 347 PAHDGEIWSLAYHPL---------GHILA---TGSNDRTVRFWTR 379 (464)
T ss_pred cccccceeeeecccc---------ceeEe---ecCCCcceeeecc
Confidence 333344568999998 88998 8999999999975
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-35 Score=254.49 Aligned_cols=298 Identities=19% Similarity=0.265 Sum_probs=243.5
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
.+..-+..|..++|+|..+ +++++-..|.|++||.+-+..+..+ ..|.++|..++|+|+ ..+|++|+.|-.|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~-qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC-CCeEEecCCccEEEEEec
Confidence 3455677899999999985 8999999999999999998888888 689999999999999 999999999999999999
Q ss_pred CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCC
Q 016032 95 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 174 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 174 (396)
.+.+++.++..+.+. |..+.|++.-..|++++.|.+|+||+..+.+.+.. ...|.| .|.|..|+| ..
T Consensus 81 k~rrclftL~GHlDY---------VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav-ltGHnH--YVMcAqFhp-tE 147 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDY---------VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV-LTGHNH--YVMCAQFHP-TE 147 (1202)
T ss_pred ccceehhhhccccce---------eEEeeccCCCceEEEccCCCeEEEEeccCCceEEE-EecCce--EEEeeccCC-cc
Confidence 999999887655443 99999999999999999999999999999877642 344555 999999999 89
Q ss_pred CEEEEeeCCCcEEEEecCCCCC-----C--------------------Ccccc--CCCCCceeEEEEcCCCCEEEEEeCC
Q 016032 175 ELLLSCGNDHFARIWDIRRLEA-----G--------------------SSLCD--LPHKRVVNSAYFSPSGSKILTTSQD 227 (396)
Q Consensus 175 ~~l~~~~~d~~i~~wd~~~~~~-----~--------------------~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d 227 (396)
.+++++|-|.+|++||+.-... + ..++. .+|...|+-++|+|.-.++++|+.|
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD 227 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD 227 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc
Confidence 9999999999999999853211 0 01111 1688999999999999999999999
Q ss_pred CcEEEEEcccccccCCCcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhh
Q 016032 228 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV 306 (396)
Q Consensus 228 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~ 306 (396)
..|++|.+..-+.-. .....+|... .++.|+|. ..++. +.+.|++|+|||+...+.+.++
T Consensus 228 RqVKlWrmnetKaWE-------vDtcrgH~nnVssvlfhp~---------q~lIl---SnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWE-------VDTCRGHYNNVSSVLFHPH---------QDLIL---SNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred ceeeEEEecccccee-------ehhhhcccCCcceEEecCc---------cceeE---ecCCCccEEEEecccccceeee
Confidence 999999997654321 1122222222 26788887 55555 7899999999999999999998
Q ss_pred cCCCCCCCcceeeeccCCcEEEeecCCcEEEEcCCCcceeeec
Q 016032 307 MDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQ 349 (396)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~~~~~~~~~~ 349 (396)
...+ ...+.+ +.+|..++++.|-|+.+.||.++...+...+
T Consensus 289 rren-dRFW~l-aahP~lNLfAAgHDsGm~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 289 RREN-DRFWIL-AAHPELNLFAAGHDSGMIVFKLERERPAYAV 329 (1202)
T ss_pred eccC-CeEEEE-EecCCcceeeeecCCceEEEEEcccCceEEE
Confidence 7666 677777 8999999999999988999988755444443
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=218.62 Aligned_cols=299 Identities=18% Similarity=0.191 Sum_probs=228.1
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
-.|+||..+++.+.++.+| .+|++++.|.++.||-..+++.+-.+ .+|.+.|.|+....+ ...+++|+.|.++++||
T Consensus 4 i~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~-s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWD-SKHLITGSADQTAKLWD 80 (327)
T ss_pred cccccCccccceEEecCCC-cEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCC-cceeeeccccceeEEEE
Confidence 4588999999999999999 59999999999999999899999888 799999999999998 99999999999999999
Q ss_pred CCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-----CCeEEEEeCCCCC----CCccceeeecCCccE
Q 016032 94 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----FGFLYLVDARTNS----RSGEAILIHRKGSKV 164 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~g~i~i~d~~~~~----~~~~~~~~~~~~~~i 164 (396)
+++|+.+..++.+.. |..+.|+++|++++.... .+.|.++|++... ..............+
T Consensus 81 v~tGk~la~~k~~~~----------Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 81 VETGKQLATWKTNSP----------VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred cCCCcEEEEeecCCe----------eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 999999998876543 899999999999888754 4689999998533 111123344455689
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcccc-CCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCC
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 243 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 243 (396)
+.+-|.| -+..|++|..||.|..||++++... +.. ..|...|+.++++|+..++++++.|.+.++||+++-++++.
T Consensus 151 t~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~--v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 151 TSALWGP-LGETIIAGHEDGSISIYDARTGKEL--VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred eeeeecc-cCCEEEEecCCCcEEEEEcccCcee--eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEE
Confidence 9999999 9999999999999999999875432 222 25888999999999999999999999999999998776543
Q ss_pred CcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeec--cccccc--ceEEEEcCccchhhhhcCCCCCCCcceee
Q 016032 244 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENY--NGAALH--PIDFIDITTGQLVAEVMDPNITTISPVNK 319 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~g~~d~--~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 319 (396)
..... . .-+.+.+|... .+.+.|-.-+... +....| .-++|++-..+.+..+.+|- ++|.++ +
T Consensus 228 y~te~---P------vN~aaisP~~d--~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF-GPINsv-A 294 (327)
T KOG0643|consen 228 YTTER---P------VNTAAISPLLD--HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF-GPINSV-A 294 (327)
T ss_pred eeecc---c------ccceecccccc--eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc-cCccee-E
Confidence 22111 1 11455555421 1111010000000 011111 23455555556666777776 899999 9
Q ss_pred eccCCcEEEeec-CCcEEEEcCC
Q 016032 320 LHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 320 ~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
|||+|+..++|+ ||.|++...+
T Consensus 295 fhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 295 FHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ECCCCcccccCCCCceEEEEEec
Confidence 999999999999 9999998654
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.1e-34 Score=213.53 Aligned_cols=276 Identities=20% Similarity=0.247 Sum_probs=225.4
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeE-ecCCcccceeEEEEecCCCcEEEEEeCCCeEEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 92 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 92 (396)
+.+++|...|.+++|+-+| ..|++|+.|+++.+|++........ ...+|.+.|-.++|+|.....|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 5678999999999999999 6799999999999999987643322 2268999999999999889999999999999999
Q ss_pred ECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC
Q 016032 93 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 172 (396)
|++++++...+..... -.-+.|+|+|.++++++.|..|.+.|.++.+.... ......+..++|+-
T Consensus 93 d~r~~k~~~~i~~~~e----------ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~----~~~~~e~ne~~w~~- 157 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGE----------NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE----EQFKFEVNEISWNN- 157 (313)
T ss_pred EeccCcEEEEeeccCc----------ceEEEEcCCCCEEEEecCcccEEEEEecccceeeh----hcccceeeeeeecC-
Confidence 9999999888765443 34578999999999999999999999998655432 22333588899996
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccc
Q 016032 173 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 252 (396)
.+++|+.....|.|.|......++...+. .|.....|+.|+|+|++||+|+.|..+.+||+..--+.+ .
T Consensus 158 ~nd~Fflt~GlG~v~ILsypsLkpv~si~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R---------~ 226 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEILSYPSLKPVQSIK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER---------C 226 (313)
T ss_pred CCCEEEEecCCceEEEEeccccccccccc--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe---------e
Confidence 77777777778999999887655544443 688999999999999999999999999999997654433 2
Q ss_pred ccccCCce-eEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec
Q 016032 253 FNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 331 (396)
Q Consensus 253 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~ 331 (396)
+.+.--|+ .+.|+.+ |+|++ +|+.|..|-|=++++|..+.++... ++...| +|||...+||.+.
T Consensus 227 isRldwpVRTlSFS~d---------g~~lA---SaSEDh~IDIA~vetGd~~~eI~~~--~~t~tV-AWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHD---------GRMLA---SASEDHFIDIAEVETGDRVWEIPCE--GPTFTV-AWHPKRPLLAYAC 291 (313)
T ss_pred eccccCceEEEEeccC---------cceee---ccCccceEEeEecccCCeEEEeecc--CCceeE-EecCCCceeeEEe
Confidence 22222222 4667776 99999 9999999999999999998887543 566777 8999999999865
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.4e-35 Score=230.11 Aligned_cols=276 Identities=18% Similarity=0.284 Sum_probs=216.3
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
....|+|+.+..+ .+++|..|.+|+|||..+..+...+ .||++.|.|+.|. ...+++|+.|.+|++||+++++
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCc
Confidence 4568999999643 5899999999999999988877777 7999999999997 5699999999999999999999
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 178 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 178 (396)
++..+-.+.+. |..+.|+ ..++++++.|..+.+||+.............+|...|+.+.|+. .+++
T Consensus 269 ~l~tlihHcea---------VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIV 334 (499)
T KOG0281|consen 269 PLNTLIHHCEA---------VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIV 334 (499)
T ss_pred hhhHHhhhcce---------eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEE
Confidence 99887655443 8888886 57899999999999999988764433333456666899999964 6999
Q ss_pred EeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCC
Q 016032 179 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT 258 (396)
Q Consensus 179 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 258 (396)
+++.|.+|++|++.+.+....+. +|...|.|+.+ .++++++|+.|.+|++||+..|.+++.+. +|..
T Consensus 335 sASgDRTikvW~~st~efvRtl~--gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe---------GHEe 401 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTLN--GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE---------GHEE 401 (499)
T ss_pred EecCCceEEEEeccceeeehhhh--cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh---------chHH
Confidence 99999999999998766544442 79999999988 79999999999999999999999865332 1111
Q ss_pred ce-eEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccch---------hhhhcCCCCCCCcceeeeccCCcEEE
Q 016032 259 PF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL---------VAEVMDPNITTISPVNKLHPRDDVLA 328 (396)
Q Consensus 259 ~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~l~ 328 (396)
.+ ++.|+ .+-+. +|..||+|+|||+..+.. +.++..|. +.+..+ .| |...++
T Consensus 402 LvRciRFd-----------~krIV---SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs-gRVFrL-QF--D~fqIv 463 (499)
T KOG0281|consen 402 LVRCIRFD-----------NKRIV---SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS-GRVFRL-QF--DEFQII 463 (499)
T ss_pred hhhheeec-----------Cceee---eccccceEEEEecccccCCcccccchHHHhhhhcc-ceeEEE-ee--cceEEE
Confidence 11 23333 44445 799999999999987643 33444444 455544 33 566788
Q ss_pred eec-CCcEEEEcCCCccee
Q 016032 329 SGS-SRSIFIWRPKEKSEL 346 (396)
Q Consensus 329 sg~-d~~i~iw~~~~~~~~ 346 (396)
+++ |.+|.|||..++-.-
T Consensus 464 sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eccCCCeEEEEEcCCCCcc
Confidence 888 999999999887644
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.3e-35 Score=220.01 Aligned_cols=290 Identities=19% Similarity=0.228 Sum_probs=237.3
Q ss_pred eeeccccCCeEEEEecC---CCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEE
Q 016032 14 AVIRYHSRRVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 90 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 90 (396)
.+..||+.+|..++|+| +| .+|++++.|+.-.+-+-+++.-+-++ .+|.+.|...+.+.+ ....++++.|=+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n-a~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN-ATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch-hhhhhhhcccchhh
Confidence 46789999999999976 66 78999999999999998898888888 689999999999988 88889999999999
Q ss_pred EEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEec
Q 016032 91 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 170 (396)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 170 (396)
+||.-+|..+..+... ..|.+++|+.|.++|++|+.+..+++||++..+.... ....+.+.|..+-|.
T Consensus 85 vw~a~tgdelhsf~hk----------hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~--E~~ghtg~Ir~v~wc 152 (334)
T KOG0278|consen 85 VWDAVTGDELHSFEHK----------HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK--EISGHTGGIRTVLWC 152 (334)
T ss_pred hhhhhhhhhhhhhhhh----------heeeeEEecccchhhhccchHHHhhhhhccCCCCCch--hhcCCCCcceeEEEe
Confidence 9999999988877532 2289999999999999999999999999998765543 344556689999999
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeec
Q 016032 171 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHS 250 (396)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 250 (396)
. ..+.|++.++|++||+||.+++...+.+ ..+.+|+++.++++|.+|.++ ..+.|.+||..+..+++......
T Consensus 153 ~-eD~~iLSSadd~tVRLWD~rTgt~v~sL---~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~-- 225 (334)
T KOG0278|consen 153 H-EDKCILSSADDKTVRLWDHRTGTEVQSL---EFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC-- 225 (334)
T ss_pred c-cCceEEeeccCCceEEEEeccCcEEEEE---ecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCcc--
Confidence 8 6677778799999999999986654444 467789999999999987766 46689999998877654222111
Q ss_pred ccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEee
Q 016032 251 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 330 (396)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg 330 (396)
. .-....+|+. +.|+ .|+.|..++.||..+|+.+..+...+.++|.++ .|+|+|...++|
T Consensus 226 -----n--V~SASL~P~k--------~~fV----aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV-rFSPdGE~yAsG 285 (334)
T KOG0278|consen 226 -----N--VESASLHPKK--------EFFV----AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV-RFSPDGELYASG 285 (334)
T ss_pred -----c--cccccccCCC--------ceEE----ecCcceEEEEEeccCCceeeecccCCCCceEEE-EECCCCceeecc
Confidence 1 1134555652 3333 489999999999999999988744444999999 999999999999
Q ss_pred c-CCcEEEEcCCCcce
Q 016032 331 S-SRSIFIWRPKEKSE 345 (396)
Q Consensus 331 ~-d~~i~iw~~~~~~~ 345 (396)
+ ||+|++|.+..++.
T Consensus 286 SEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCceEEEEEecCCCc
Confidence 9 99999999877763
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-32 Score=209.34 Aligned_cols=296 Identities=19% Similarity=0.292 Sum_probs=238.2
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC--CCe
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS--DGT 88 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~ 88 (396)
+..+.++.-.+.|+++.|+++| .+|++++.|.+++|||..++.....+ ..+...|..++|... ...++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~-~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHH-SNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecC-CceEEEccCCCCCc
Confidence 3446677778899999999999 57888999999999999999888888 457778999999877 666666665 889
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
|+..++.+.+.++.+..+... |.+++.+|-+..+++++.|++|++||++..++...+ ... .-..++
T Consensus 82 IryLsl~dNkylRYF~GH~~~---------V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l---~~~--~~pi~A 147 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKR---------VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL---NLS--GRPIAA 147 (311)
T ss_pred eEEEEeecCceEEEcCCCCce---------EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE---ecC--CCccee
Confidence 999999999999999766554 999999999999999999999999999976655432 111 234678
Q ss_pred eccCCCCEEEEeeCCCcEEEEecCCCCCCCcccc-C--CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCc
Q 016032 169 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-L--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 245 (396)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 245 (396)
|.| .|-++|++.....|++||+|....+..... + +.....+.+.|||+|++|+.++..+.+.+.|.-+|.......
T Consensus 148 fDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 148 FDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred ECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 999 999999999888999999998654332211 1 345678999999999999999999999999999888543221
Q ss_pred ceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCc
Q 016032 246 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 325 (396)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (396)
........++...|.|+ |+++. +|+.||+|.+|++++|..+..+.+.+...+.++ .|+|.-.
T Consensus 227 -----~~~~~~~~~~~a~ftPd---------s~Fvl---~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~-~fnP~~~ 288 (311)
T KOG1446|consen 227 -----GYPNAGNLPLSATFTPD---------SKFVL---SGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCV-RFNPRYA 288 (311)
T ss_pred -----eccCCCCcceeEEECCC---------CcEEE---EecCCCcEEEEEcCCCcEeeEecCCCCCCcccc-ccCCcee
Confidence 11122223367899999 88888 899999999999999999999999877888888 7999988
Q ss_pred EEEeecCCcEEEEcCCCc
Q 016032 326 VLASGSSRSIFIWRPKEK 343 (396)
Q Consensus 326 ~l~sg~d~~i~iw~~~~~ 343 (396)
++++++ ..+.+|=+...
T Consensus 289 mf~sa~-s~l~fw~p~~~ 305 (311)
T KOG1446|consen 289 MFVSAS-SNLVFWLPDED 305 (311)
T ss_pred eeeecC-ceEEEEecccc
Confidence 887775 67888866543
No 45
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=227.97 Aligned_cols=294 Identities=17% Similarity=0.306 Sum_probs=232.6
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
.+..|.||.++|.|++=+|.....+|+|+.||.|+|||+.+..+...+ ..|.+.|..|++.. ..+++++.|.+|+.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ---TSFFTVGDDKTVKQ 133 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc---cceEEecCCcceee
Confidence 457889999999999999987567999999999999999998888888 78999999999985 68899999999999
Q ss_pred EECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 92 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
|-++. .....+..... +..+.-+..+..+++++. .|.|||.....+.... ......|.++.|+|
T Consensus 134 wk~~~-~p~~tilg~s~----------~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sm---swG~Dti~svkfNp 197 (433)
T KOG0268|consen 134 WKIDG-PPLHTILGKSV----------YLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSM---SWGADSISSVKFNP 197 (433)
T ss_pred eeccC-Ccceeeecccc----------ccccccccccccccccCc--eeeecccccCCcccee---ecCCCceeEEecCC
Confidence 99875 34444433322 556666666667777654 7999999876665543 23334699999999
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecc
Q 016032 172 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 251 (396)
Q Consensus 172 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 251 (396)
....+|++|..|+.|.|||+++..+...+. ..-.-+.|+|+|.+-.+++|+.|..++.||++.-.. | ..
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi---~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~--p------~~ 266 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVI---LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR--P------LN 266 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceee---eeccccceecCccccceeeccccccceehhhhhhcc--c------ch
Confidence 888899999999999999999866544432 344567899999888899999999999999975332 1 22
Q ss_pred cccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEee
Q 016032 252 DFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 330 (396)
Q Consensus 252 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg 330 (396)
.+..+.+. +.+.|+|. |+-++ +|+.|.+|+||....+.....+.......+.++ .||.|.+++++|
T Consensus 267 v~~dhvsAV~dVdfspt---------G~Efv---sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~V-k~S~Dskyi~SG 333 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPT---------GQEFV---SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCV-KYSMDSKYIISG 333 (433)
T ss_pred hhcccceeEEEeccCCC---------cchhc---cccccceEEEeecCCCcchhhhhHhhhheeeEE-EEeccccEEEec
Confidence 33444443 67899998 77777 899999999999988876666655556778888 899999999999
Q ss_pred c-CCcEEEEcCCCcceeeec
Q 016032 331 S-SRSIFIWRPKEKSELVEQ 349 (396)
Q Consensus 331 ~-d~~i~iw~~~~~~~~~~~ 349 (396)
+ |+.|++|.....+.+..+
T Consensus 334 Sdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 334 SDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred CCCcceeeeecchhhhcCCC
Confidence 9 899999998776655444
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-33 Score=237.99 Aligned_cols=291 Identities=16% Similarity=0.229 Sum_probs=240.9
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
-.+.||...|.+++++.+. .++++|+ .+.++||+..+.+++.++. ..-+.+..|.|. +.++++|...|.+.+||
T Consensus 367 i~~~GHR~dVRsl~vS~d~-~~~~Sga-~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpg-d~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDS-ILLASGA-GESIKIWNRDTLKCIRTIT---CGYILASKFVPG-DRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCc-eeeeecC-CCcEEEEEccCcceeEEec---cccEEEEEecCC-CceEEEeccCCceEEEE
Confidence 4678999999999999987 5666665 5799999999999999884 338899999998 99999999999999999
Q ss_pred CCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCC----Cccce-----eeecCCccE
Q 016032 94 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR----SGEAI-----LIHRKGSKV 164 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~----~~~~~-----~~~~~~~~i 164 (396)
+.+...+..+..+... +.+++.+|++..+++|+.|.+|++||...... ..+.+ ....-...|
T Consensus 441 laS~~l~Eti~AHdga---------IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv 511 (888)
T KOG0306|consen 441 LASASLVETIRAHDGA---------IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV 511 (888)
T ss_pred eehhhhhhhhhccccc---------eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccE
Confidence 9999888887655443 99999999999999999999999999753221 00000 112234579
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCC
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 244 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 244 (396)
.|+.++| ++.+|+++--|.++++|-+.+.+. .+..++|.-||.|+..||+++++++|+.|.+|++|-++-|.+.+
T Consensus 512 L~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK-- 586 (888)
T KOG0306|consen 512 LCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK-- 586 (888)
T ss_pred EEEEEcC-CCcEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh--
Confidence 9999999 999999999999999999987554 34445899999999999999999999999999999999988733
Q ss_pred cceeecccccccCC-ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccC
Q 016032 245 REIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 323 (396)
Q Consensus 245 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (396)
.+..|.. .+.+.|-|. ..++. +++.|+.|+-||-..-+.++.+.+|+ ..+.++ +.+|+
T Consensus 587 -------S~fAHdDSvm~V~F~P~---------~~~FF---t~gKD~kvKqWDg~kFe~iq~L~~H~-~ev~cL-av~~~ 645 (888)
T KOG0306|consen 587 -------SFFAHDDSVMSVQFLPK---------THLFF---TCGKDGKVKQWDGEKFEEIQKLDGHH-SEVWCL-AVSPN 645 (888)
T ss_pred -------hhhcccCceeEEEEccc---------ceeEE---EecCcceEEeechhhhhhheeeccch-heeeee-EEcCC
Confidence 2233332 357888886 44444 68999999999999999999999998 888888 89999
Q ss_pred CcEEEeec-CCcEEEEcCCCcce
Q 016032 324 DDVLASGS-SRSIFIWRPKEKSE 345 (396)
Q Consensus 324 ~~~l~sg~-d~~i~iw~~~~~~~ 345 (396)
|.++++++ |.+|++|.......
T Consensus 646 G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 646 GSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred CCeEEeccCCceeEeeeccCcce
Confidence 99999999 99999998765443
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=245.66 Aligned_cols=301 Identities=13% Similarity=0.144 Sum_probs=195.8
Q ss_pred eeec-cccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCC---------cccceeEEEEec--CCCc--E
Q 016032 14 AVIR-YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI---------HSCIVNNIRFNP--TNDG--T 79 (396)
Q Consensus 14 ~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~v~~~~~~~--~~~~--~ 79 (396)
+.++ +|.++|+++.|++|| +|||+|+.|+.|+||.+...+....-... -...+..+.-++ -.+. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 4456 899999999999999 89999999999999998762211100000 000000000000 0000 0
Q ss_pred EEEEeCCC----eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccce
Q 016032 80 VYAASSDG----TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 155 (396)
Q Consensus 80 l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~ 155 (396)
.-.+.... ...++-+...-........ ..|..+.|+.+ ++|++++.|.+|+||++....++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt----------~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL---- 403 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHT----------ADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECL---- 403 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccc----------hhheecccccC-CeeEeccccccEEeecCCCccee----
Confidence 00000000 0111122111111111000 12777777754 56777888888888888764433
Q ss_pred eeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 156 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 156 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
....|...|+|++|+|.|.++|++|+-|+.|+||++... +.........-|++++|.|+|+..++|+.+|.+++|++
T Consensus 404 ~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~---~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t 480 (712)
T KOG0283|consen 404 KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK---KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT 480 (712)
T ss_pred eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcC---eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence 455677799999999999999999999999999999642 23333345578999999999999999999999999999
Q ss_pred ccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCc
Q 016032 236 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 315 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~ 315 (396)
...++........+......+..+..+.|.|..+. +.+ ..+.|..|+|||..+..++..|.+.+...-.
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~-------~vL----VTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD-------EVL----VTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ 549 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCC-------eEE----EecCCCceEEEeccchhhhhhhcccccCCcc
Confidence 87766443222222222222223446777776553 222 2588999999999999999999987644443
Q ss_pred ceeeeccCCcEEEeec-CCcEEEEcCCCcc
Q 016032 316 PVNKLHPRDDVLASGS-SRSIFIWRPKEKS 344 (396)
Q Consensus 316 ~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~ 344 (396)
.-++|+.||++|++|+ |..|+||+.....
T Consensus 550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 550 ISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred eeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 3347999999999999 9999999975443
No 48
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=223.72 Aligned_cols=287 Identities=18% Similarity=0.252 Sum_probs=238.1
Q ss_pred cccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEec-------CCcccceeEEEEecCCCcEEEEEeCCCeEE
Q 016032 18 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-------NIHSCIVNNIRFNPTNDGTVYAASSDGTVS 90 (396)
Q Consensus 18 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 90 (396)
|...-+.|..|+||| ++|++|+.||.|.+|+..+++....+. --+..+|.|++|+.+ ..++++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcEE
Confidence 455678899999999 699999999999999998876443321 237789999999999 99999999999999
Q ss_pred EEECCCCcccceee-cCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEe
Q 016032 91 CTDLETGLALSLMN-VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 169 (396)
Q Consensus 91 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 169 (396)
+|.+++|.+++.+. .+..+ |.|+.|+.|+..+++++.|..+++.-+.+++...+ +..|.+.|+...|
T Consensus 289 vWri~tG~ClRrFdrAHtkG---------vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE---frGHsSyvn~a~f 356 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKG---------VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE---FRGHSSYVNEATF 356 (508)
T ss_pred EEEEecchHHHHhhhhhccC---------eeEEEEccCcchhhcccccceEEEeccccchhHHH---hcCccccccceEE
Confidence 99999999999886 33333 99999999999999999999999999999887653 4566779999999
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCccee
Q 016032 170 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 248 (396)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 248 (396)
.+ ++..+++++.||+|++|+..+.++...+...+..-+|+++..-| +...++++...+++.|.++.. +.++.
T Consensus 357 t~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrs----- 429 (508)
T KOG0275|consen 357 TD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRS----- 429 (508)
T ss_pred cC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEee-----
Confidence 99 99999999999999999999888877777777778899998888 677899999999999999863 32221
Q ss_pred ecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEE
Q 016032 249 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 328 (396)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 328 (396)
...........+.+..+|. |.++. ..+.|+.++.|...+|++-.++..|. ..+..+ +-+|..++||
T Consensus 430 fsSGkREgGdFi~~~lSpk---------GewiY---cigED~vlYCF~~~sG~LE~tl~VhE-kdvIGl-~HHPHqNllA 495 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPK---------GEWIY---CIGEDGVLYCFSVLSGKLERTLPVHE-KDVIGL-THHPHQNLLA 495 (508)
T ss_pred eccCCccCCceEEEEecCC---------CcEEE---EEccCcEEEEEEeecCceeeeeeccc-cccccc-ccCcccchhh
Confidence 1112222223356778887 88877 67899999999999999999988887 445555 7899999999
Q ss_pred eec-CCcEEEEc
Q 016032 329 SGS-SRSIFIWR 339 (396)
Q Consensus 329 sg~-d~~i~iw~ 339 (396)
+=+ ||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 988 99999996
No 49
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=7.1e-33 Score=227.68 Aligned_cols=311 Identities=17% Similarity=0.201 Sum_probs=228.5
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee----eeEecCCcccceeEEEEecCCCcEEEEEeCCCe
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 88 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 88 (396)
-..|++|+..|.++++.|.| ..|++|+.|-+|++||+..... ...+.+.....|+++.|++. ++.|++.+....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T-g~~iLvvsg~aq 237 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT-GDQILVVSGSAQ 237 (641)
T ss_pred eEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC-CCeEEEEecCcc
Confidence 35789999999999999999 4699999999999999986432 22333556778999999999 888888887889
Q ss_pred EEEEECCCCcccceeecCCC---CCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeee---cCC
Q 016032 89 VSCTDLETGLALSLMNVNPN---GWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIH---RKG 161 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~---~~~ 161 (396)
.+++|-...+.....+...- -.....+...++|-+|+|.. ..+++++.||++++||+...+...+.+... ...
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999776555444432210 01223344569999999974 678999999999999998766544444322 233
Q ss_pred ccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCC--ceeEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 016032 162 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKR--VVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 238 (396)
-+++.++|+| ++.+||+|+.||.|.+|+.+.......+... .|.. .|+||.||++|++|++-+.|+++++||++..
T Consensus 318 v~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 4688999999 9999999999999999998654332222222 5665 8999999999999999999999999999865
Q ss_pred cccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCccee
Q 016032 239 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVN 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~ 318 (396)
+. ++... ..+........++|+|+ ..+.+.|.-+. .+...+.+.+||..+-..++++.-.. ..+..+
T Consensus 397 kk--pL~~~---tgL~t~~~~tdc~FSPd---~kli~TGtS~~---~~~~~g~L~f~d~~t~d~v~ki~i~~-aSvv~~- 463 (641)
T KOG0772|consen 397 KK--PLNVR---TGLPTPFPGTDCCFSPD---DKLILTGTSAP---NGMTAGTLFFFDRMTLDTVYKIDIST-ASVVRC- 463 (641)
T ss_pred cc--chhhh---cCCCccCCCCccccCCC---ceEEEeccccc---CCCCCceEEEEeccceeeEEEecCCC-ceEEEE-
Confidence 53 11111 11111112236899998 34444454444 56677899999999999888876664 555555
Q ss_pred eeccCCcEEEeec-CCcEEEEc
Q 016032 319 KLHPRDDVLASGS-SRSIFIWR 339 (396)
Q Consensus 319 ~~~~~~~~l~sg~-d~~i~iw~ 339 (396)
.|||.-+.|..|+ ||+++||-
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eecchhhheeeecCCCceEEEE
Confidence 6999987777777 99999873
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-32 Score=202.38 Aligned_cols=258 Identities=16% Similarity=0.189 Sum_probs=215.9
Q ss_pred ecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC
Q 016032 59 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 138 (396)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g 138 (396)
....+.++|..+.|+-+ +++.++++.|.+|++|+...+.+++++..+... |..++.+.++..+++++.|.
T Consensus 12 ~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~E---------VlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE---------VLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred eecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCce---------eeeccccccccccccCCCCc
Confidence 33679999999999999 999999999999999999999999998665543 99999999999999999999
Q ss_pred eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCC
Q 016032 139 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPS 217 (396)
Q Consensus 139 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 217 (396)
.+.+||+.+++... .+..|.+.|+.++|+. +...+++|+.|.++++||-|+.. ..+++.+ .....|.++.. .
T Consensus 82 ~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v--~ 154 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDR---RFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDV--A 154 (307)
T ss_pred eEEEEEcccCeeee---ecccccceeeEEEecC-cceEEEeccccceeEEEEcccCC-CCccchhhhhcCceeEEEe--c
Confidence 99999999998765 4567777999999998 89999999999999999998744 3445444 46678988888 5
Q ss_pred CCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 218 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
+..+++|+.||+++.||++.|.+... .+...+ .++.|+++ |+... .++.++++++.|-
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sD--------y~g~pi--t~vs~s~d---------~nc~L---a~~l~stlrLlDk 212 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSD--------YFGHPI--TSVSFSKD---------GNCSL---ASSLDSTLRLLDK 212 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehh--------hcCCcc--eeEEecCC---------CCEEE---Eeeccceeeeccc
Confidence 67899999999999999999886331 111111 26788887 66665 6899999999999
Q ss_pred CccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceE
Q 016032 298 TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 355 (396)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~ 355 (396)
.+|+++..+.+|......--.++......+++|+ ||.+++||+....++..+..++.+
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce
Confidence 9999999999997544332226778888999999 999999999999999998888876
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=221.52 Aligned_cols=260 Identities=19% Similarity=0.285 Sum_probs=201.2
Q ss_pred CCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEE
Q 016032 4 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 83 (396)
.|+..+..++..|.||++.|.|+.|.. +++++|+.|.+|+|||+++++++.++ .+|...|..+.|+ +.+++++
T Consensus 221 iWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~---ng~mvtc 293 (499)
T KOG0281|consen 221 IWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFS---NGYMVTC 293 (499)
T ss_pred EeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEe---CCEEEEe
Confidence 478888889999999999999999963 68999999999999999999998887 5799999999998 5699999
Q ss_pred eCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 84 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
+.|.++.+||+.+...+.....- .++. ..|+.+.|+ .+++++++.|.+|++|++.+.+.+.. .+.|.-.
T Consensus 294 SkDrsiaVWdm~sps~it~rrVL----vGHr--AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRt---l~gHkRG 362 (499)
T KOG0281|consen 294 SKDRSIAVWDMASPTDITLRRVL----VGHR--AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRT---LNGHKRG 362 (499)
T ss_pred cCCceeEEEeccCchHHHHHHHH----hhhh--hheeeeccc--cceEEEecCCceEEEEeccceeeehh---hhccccc
Confidence 99999999999876533221110 1111 237888885 45999999999999999999877653 3555556
Q ss_pred EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccC
Q 016032 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 242 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 242 (396)
|.|+.+ .+.++++|+.|.+|++||+..+. ++..+ +|..-|.++.| +.+.+++|+.||+|++||+.++..-+
T Consensus 363 IAClQY---r~rlvVSGSSDntIRlwdi~~G~---cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 363 IACLQY---RDRLVVSGSSDNTIRLWDIECGA---CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred ceehhc---cCeEEEecCCCceEEEEeccccH---HHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCc
Confidence 878777 67999999999999999997644 44444 79999999999 67889999999999999999876544
Q ss_pred CCcceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchh
Q 016032 243 PSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 303 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~ 303 (396)
.....+.......+. ..+.+.|+. .-+. +.+.|.+|-|||..++..-
T Consensus 435 a~~~~~Cl~~lv~hsgRVFrLQFD~-----------fqIv---sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 435 APASTLCLRTLVEHSGRVFRLQFDE-----------FQII---SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccccchHHHhhhhccceeEEEeecc-----------eEEE---eccCCCeEEEEEcCCCCcc
Confidence 333333222222332 334555553 2233 5788999999999776543
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=240.55 Aligned_cols=256 Identities=22% Similarity=0.335 Sum_probs=208.6
Q ss_pred CcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc--ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCe
Q 016032 62 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 139 (396)
Q Consensus 62 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 139 (396)
.+...|.++.|+++ +..+++++.++.+++|+..... ....+..+ . ..|..++|+|++.++++++.|+.
T Consensus 157 ~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h-------~--~~v~~~~fs~d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 157 HECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGH-------T--RGVSDVAFSPDGSYLLSGSDDKT 226 (456)
T ss_pred cccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhcccccc-------c--cceeeeEECCCCcEEEEecCCce
Confidence 35788999999999 8889999999999999997666 33333212 2 33999999999999999999999
Q ss_pred EEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCC
Q 016032 140 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 219 (396)
Q Consensus 140 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (396)
|++||+........ ....|...|++++|+| .++++++|+.|++|++||+++++....+. +|...|++++|++++.
T Consensus 227 iriwd~~~~~~~~~--~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLK--TLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLK--GHSDGISGLAFSPDGN 301 (456)
T ss_pred EEEeeccCCCeEEE--EecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeee--ccCCceEEEEECCCCC
Confidence 99999955433222 4456777999999999 88999999999999999998855544433 6999999999999999
Q ss_pred EEEEEeCCCcEEEEEcccccccCCCcceeecccccccC---CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEE
Q 016032 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL---TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 296 (396)
Q Consensus 220 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd 296 (396)
+|++++.|+.|++||+.++... ....+.... ....+.|+|+ |.|+. ++..|+.+++||
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~---------~~~ll---~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPN---------GKYLL---SASLDRTLKLWD 362 (456)
T ss_pred EEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCC---------CcEEE---EecCCCeEEEEE
Confidence 9999999999999999998842 001111111 2247889998 88888 899999999999
Q ss_pred cCccchhhhhcCCCCC--CCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeecccc
Q 016032 297 ITTGQLVAEVMDPNIT--TISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 352 (396)
Q Consensus 297 ~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~ 352 (396)
+..+..+..+.+|... .+... ..++.+.++++|+ |+.|++|++.++..+..+.+|
T Consensus 363 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 363 LRSGKSVGTYTGHSNLVRCIFSP-TLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred ccCCcceeeecccCCcceeEecc-cccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 9999999999888765 23232 3578899999999 999999999999999999999
No 53
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=207.78 Aligned_cols=313 Identities=17% Similarity=0.215 Sum_probs=223.7
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee--Ee-cCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI--VY-GNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~-~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
+..+.+|++|.+.|++++|+.+| +.|+|++.|++|+||++..-.... .+ ..-.-+..+.+.|.|+-...++++-..
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 34557899999999999999999 789999999999999997632110 00 011223568899999955666777777
Q ss_pred CeEEEEECCCCcc---c-ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCc
Q 016032 87 GTVSCTDLETGLA---L-SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 162 (396)
Q Consensus 87 g~v~iwd~~~~~~---~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 162 (396)
.++++|.+...+- . ..+......+ ...+...+..+-...++.+|++++.|..|.+|+++ ++.+..+ .....
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f-~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i---dtnq~ 229 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEF-ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI---DTNQS 229 (420)
T ss_pred CEEEEEEeeecccCCCCccccccccccc-chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee---ccccc
Confidence 8899998754321 1 1111111101 11122336667777889999999999999999999 5444322 22333
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC------CCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
.-...+.+| +|+++++++..-.|++|.+--.+. .+.+...+|...|..++|+++...+++.+.||+++|||++
T Consensus 230 ~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 230 SNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 466788999 999999999999999998642221 2233333899999999999999999999999999999997
Q ss_pred cccccCCCcceeecc---cccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCC
Q 016032 237 FGNLDSPSREIVHSH---DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITT 313 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~ 313 (396)
-.........++... .......++++..+|. |+.++ .+....|++|..++|+...++..-+...
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~---------g~~lA----~s~gs~l~~~~se~g~~~~~~e~~h~~~ 375 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS---------GDSLA----VSFGSDLKVFASEDGKDYPELEDIHSTT 375 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCC---------CcEEE----eecCCceEEEEcccCccchhHHHhhcCc
Confidence 543322222222111 1122334567888887 66665 3444569999999999998888878789
Q ss_pred CcceeeeccCCcEEEeecCCcEEEEcCCCc
Q 016032 314 ISPVNKLHPRDDVLASGSSRSIFIWRPKEK 343 (396)
Q Consensus 314 i~~~~~~~~~~~~l~sg~d~~i~iw~~~~~ 343 (396)
|.++ +|+++|+++++++|..+++..-..|
T Consensus 376 Is~i-s~~~~g~~~atcGdr~vrv~~ntpg 404 (420)
T KOG2096|consen 376 ISSI-SYSSDGKYIATCGDRYVRVIRNTPG 404 (420)
T ss_pred eeeE-EecCCCcEEeeecceeeeeecCCCc
Confidence 9998 9999999999999999999875444
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.3e-32 Score=208.54 Aligned_cols=266 Identities=15% Similarity=0.200 Sum_probs=208.6
Q ss_pred ecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCC-CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC
Q 016032 59 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 137 (396)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 137 (396)
...+|.+.|+.+.|+|+ +..|++|+.|..|.+|+... .+....++.+. ..|..+.|.++++.+++++.|
T Consensus 42 ~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs---------gAVM~l~~~~d~s~i~S~gtD 111 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHS---------GAVMELHGMRDGSHILSCGTD 111 (338)
T ss_pred hcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeecccc---------ceeEeeeeccCCCEEEEecCC
Confidence 34789999999999998 99999999999999999643 23334443333 349999999999999999999
Q ss_pred CeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCC
Q 016032 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 217 (396)
Q Consensus 138 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (396)
.+++.||+++++...+ ...|...++++.-......++.+++.|++++|||+|+.+. ++.+...-+++++.|...
T Consensus 112 k~v~~wD~~tG~~~rk---~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~---~~t~~~kyqltAv~f~d~ 185 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRK---HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA---IKTFENKYQLTAVGFKDT 185 (338)
T ss_pred ceEEEEecccceeeeh---hccccceeeecCccccCCeEEEecCCCceEEEEeecccch---hhccccceeEEEEEeccc
Confidence 9999999999987653 3445557888876554556888899999999999987444 445556788999999999
Q ss_pred CCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCce-eEEeCCCCCCCceeeEeeeeeeecccccccceEEEE
Q 016032 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 296 (396)
Q Consensus 218 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd 296 (396)
+..+.+|+-|+.|++||++.+... +...++..++ .+.-+|. |.++. +-+.|.++++||
T Consensus 186 s~qv~sggIdn~ikvWd~r~~d~~---------~~lsGh~DtIt~lsls~~---------gs~ll---snsMd~tvrvwd 244 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKNDGL---------YTLSGHADTITGLSLSRY---------GSFLL---SNSMDNTVRVWD 244 (338)
T ss_pred ccceeeccccCceeeeccccCcce---------EEeecccCceeeEEeccC---------CCccc---cccccceEEEEE
Confidence 999999999999999999877653 2334444443 3555555 77776 788999999999
Q ss_pred cCc----cchhhhhcCCCCCC---CcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEeecCC
Q 016032 297 ITT----GQLVAEVMDPNITT---ISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKAD 362 (396)
Q Consensus 297 ~~~----~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 362 (396)
++. .+++..+.++.... ...+ +|+|+++.+..|+ |..+++||......++.+.+|...+.|..+.
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~c-swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fh 317 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKC-SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFH 317 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhccee-eccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeec
Confidence 864 33455566553222 2233 7999999999999 9999999999999999999999887765543
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-33 Score=207.36 Aligned_cols=205 Identities=22% Similarity=0.329 Sum_probs=174.4
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
-.+.+..++|++.....+++++.||+++|||+.....+....+.|...|.++.|++.....+++++.|++|++|+..-++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 45789999999988788999999999999998766655555588999999999999877888999999999999999988
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
.+.++..+.. .|+..+|+|. ++.+++++.|+.+++||++..... .....|...+.++.|+..+.+++
T Consensus 139 Sv~Tf~gh~~---------~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~---~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 139 SVQTFNGHNS---------CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF---MSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ceEeecCCcc---------EEEEEecCCCCCCeEEEccCCceEEEEEecCCCce---eEEEeccceeEeecccccCCcEE
Confidence 8888765443 3999999996 788999999999999999886433 23555666899999999899999
Q ss_pred EEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEccc
Q 016032 178 LSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 178 ~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~ 237 (396)
++|+.|+.|+.||+++.+. ++..+ +|.-.|..+.||| ...+|++++.|-+++|||...
T Consensus 207 ~Tg~vd~~vr~wDir~~r~--pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRT--PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred EecCCCceEEEEehhhccc--cceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 9999999999999997654 33333 8999999999999 566889999999999999863
No 56
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.9e-32 Score=212.65 Aligned_cols=262 Identities=18% Similarity=0.230 Sum_probs=224.1
Q ss_pred CCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEE
Q 016032 4 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 83 (396)
-|++.++....++.||-..|..+++|+.. .||++++.|+.|+.||++.++.+..+ .+|-..|+|++.+|. -+.|++|
T Consensus 177 IwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPT-ldvl~t~ 253 (460)
T KOG0285|consen 177 IWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPT-LDVLVTG 253 (460)
T ss_pred EEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEecccc-ceeEEec
Confidence 48899999999999999999999999998 48999999999999999999888887 789999999999999 9999999
Q ss_pred eCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 84 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
+.|.++++||+++...+..+..+... |..+.+.|-...+++|+.|++|++||++.++... ....|...
T Consensus 254 grDst~RvWDiRtr~~V~~l~GH~~~---------V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~---tlt~hkks 321 (460)
T KOG0285|consen 254 GRDSTIRVWDIRTRASVHVLSGHTNP---------VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI---TLTHHKKS 321 (460)
T ss_pred CCcceEEEeeecccceEEEecCCCCc---------ceeEEeecCCCceEEecCCceEEEeeeccCceeE---eeecccce
Confidence 99999999999999999888766554 8889999988899999999999999999987543 34455558
Q ss_pred EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCC
Q 016032 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 243 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 243 (396)
+.+++.+| ....|++++.| .|+-|++..+.....+ -+|...|++++.+.|+ ++++|+..|.+.+||.++|...+.
T Consensus 322 vral~lhP-~e~~fASas~d-nik~w~~p~g~f~~nl--sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 322 VRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQNL--SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred eeEEecCC-chhhhhccCCc-cceeccCCccchhhcc--ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence 99999999 88999999876 7999999765543332 2789999999998776 788899999999999999987666
Q ss_pred CcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 244 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
.........+......+..+|+.. |..+. +|..|.+|++|.-
T Consensus 397 ~~t~vqpGSl~sEagI~as~fDkt---------g~rli---t~eadKtIk~~ke 438 (460)
T KOG0285|consen 397 GQTIVQPGSLESEAGIFASCFDKT---------GSRLI---TGEADKTIKMYKE 438 (460)
T ss_pred ccccccCCccccccceeEEeeccc---------CceEE---eccCCcceEEEec
Confidence 655666666777777777888776 55555 7899999999974
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-31 Score=225.05 Aligned_cols=261 Identities=17% Similarity=0.243 Sum_probs=214.3
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
..+...|.++.|+|. ..+++++-..|.|.||+.++...+..+.....+ |.+..|-+..+.+++|+.|..|
T Consensus 10 ~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~P---------vRa~kfiaRknWiv~GsDD~~I 79 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVP---------VRAAKFIARKNWIVTGSDDMQI 79 (794)
T ss_pred hccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccc---------hhhheeeeccceEEEecCCceE
Confidence 348899999999999 999999999999999999999999998876654 8888999999999999999999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcC-CC
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SG 218 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~ 218 (396)
++|+..+.+... .++.|...|++++.+| ...+++++|+|-.|++||.... -.+.+.+ +|...|++++|+| |.
T Consensus 80 rVfnynt~ekV~---~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 80 RVFNYNTGEKVK---TFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred EEEecccceeeE---EeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCc
Confidence 999999987553 6788888999999999 8889999999999999998642 2233333 8999999999999 88
Q ss_pred CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 219 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 219 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
+.+|+++.|++|++|.+..... ..++.+|..- -++.|-+.+. ..|+. +|+.|..|+|||.
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~---------nfTl~gHekGVN~Vdyy~~gd-------kpylI---sgaDD~tiKvWDy 214 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHP---------NFTLEGHEKGVNCVDYYTGGD-------KPYLI---SGADDLTIKVWDY 214 (794)
T ss_pred cceeeeeccccEEEEEcCCCCC---------ceeeeccccCcceEEeccCCC-------cceEE---ecCCCceEEEeec
Confidence 8999999999999999965443 2222333222 2455555421 34666 8999999999999
Q ss_pred CccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEe
Q 016032 298 TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 358 (396)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~ 358 (396)
++..+++++.+|. ..+..+ .|+|.-.++++|+ ||+++||+..+-++...+......+-|
T Consensus 215 Qtk~CV~TLeGHt-~Nvs~v-~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~ 274 (794)
T KOG0276|consen 215 QTKSCVQTLEGHT-NNVSFV-FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWC 274 (794)
T ss_pred chHHHHHHhhccc-ccceEE-EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEE
Confidence 9999999999997 677777 8999999999999 999999998887666655544444333
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.1e-33 Score=222.38 Aligned_cols=289 Identities=19% Similarity=0.267 Sum_probs=235.3
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce--eeeEecCCcccceeEEEEecCCCcEEEEEeCCCeE
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 89 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 89 (396)
....+..|.+.|..+.|-++.+ .|++|+.|..|++|++.... ....+ .+..++|+.+.|.++ +..+++++.|+.+
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~-~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD-NKHVIAASNDKNL 243 (459)
T ss_pred hhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC-CceEEeecCCCce
Confidence 3467888999999999999863 69999999999999998765 33333 567889999999999 8999999999999
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEe
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 169 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 169 (396)
++|++...+...++..|... |+++.|......+++|+.|.+|++||+....+...+.. ...+..|..
T Consensus 244 r~Wnvd~~r~~~TLsGHtdk---------Vt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~~ 310 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLSGHTDK---------VTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIVC 310 (459)
T ss_pred eeeeccchhhhhhhcccccc---------eeeehhhccccceeeccccchhhhhhhhhhheeccccc----cccccceEe
Confidence 99999999999988776654 88998887777799999999999999998665544322 224666766
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceee
Q 016032 170 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 249 (396)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 249 (396)
+ ...+++|..|+.|++||+++......+ .-.+.|+++..++++..|.+++.|.++.+.|+++.+...+..-
T Consensus 311 ~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv---~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA--- 381 (459)
T KOG0288|consen 311 S---ISDVISGHFDKKVRFWDIRSADKTRSV---PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA--- 381 (459)
T ss_pred c---ceeeeecccccceEEEeccCCceeeEe---ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec---
Confidence 5 377899999999999999875553333 3456899999999999999999999999999998776443321
Q ss_pred cccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCC-CCcceeeeccCCcEEE
Q 016032 250 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNIT-TISPVNKLHPRDDVLA 328 (396)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~ 328 (396)
..+........+.|+|+ +.|++ +|+.||.|+||++.++++...+...+.. .|.++ +|+|.|..|+
T Consensus 382 -~g~k~asDwtrvvfSpd---------~~Yva---AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~-~W~~sG~~Ll 447 (459)
T KOG0288|consen 382 -EGFKCASDWTRVVFSPD---------GSYVA---AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL-SWNPSGSGLL 447 (459)
T ss_pred -cccccccccceeEECCC---------Cceee---eccCCCcEEEEEccCceEEEEeccCCCCcceEEE-EEcCCCchhh
Confidence 12221222347889998 99999 8999999999999999998888766644 68888 8999999999
Q ss_pred eec-CCcEEEEc
Q 016032 329 SGS-SRSIFIWR 339 (396)
Q Consensus 329 sg~-d~~i~iw~ 339 (396)
+++ ++.+.+|.
T Consensus 448 sadk~~~v~lW~ 459 (459)
T KOG0288|consen 448 SADKQKAVTLWT 459 (459)
T ss_pred cccCCcceEecC
Confidence 999 99999994
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-31 Score=224.12 Aligned_cols=278 Identities=19% Similarity=0.293 Sum_probs=224.4
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceee
Q 016032 25 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 104 (396)
Q Consensus 25 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 104 (396)
=+.|+..+ .||.|. ...|++|+..++....... .+...|+++.|+++ +.+|++|..+|.|.|||..+.+.+..+.
T Consensus 182 lldWss~n--~laVal-g~~vylW~~~s~~v~~l~~-~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWSSAN--VLAVAL-GQSVYLWSASSGSVTELCS-FGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred HhhcccCC--eEEEEe-cceEEEEecCCCceEEeEe-cCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhcccccccc
Confidence 36778554 677775 3589999999887555553 34899999999999 9999999999999999999888887776
Q ss_pred cCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCC
Q 016032 105 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH 184 (396)
Q Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 184 (396)
... ...|-+++|. +..+.+|+.++.|..+|++..+..... ...|...|..++|++ ++.++|+|+.|+
T Consensus 257 ~~h--------~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--~~~H~qeVCgLkws~-d~~~lASGgnDN 323 (484)
T KOG0305|consen 257 GSH--------ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--LQGHRQEVCGLKWSP-DGNQLASGGNDN 323 (484)
T ss_pred CCc--------CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--hhcccceeeeeEECC-CCCeeccCCCcc
Confidence 521 1338999998 778999999999999999998766553 445556899999999 999999999999
Q ss_pred cEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEe--CCCcEEEEEcccccccCCCcceeecccccccCCcee
Q 016032 185 FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFR 261 (396)
Q Consensus 185 ~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (396)
.+.|||....+. .+....|.+.|..++|+| ...+||+|+ .|+.|++||..++..+.. .........
T Consensus 324 ~~~Iwd~~~~~p--~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~---------vdtgsQVcs 392 (484)
T KOG0305|consen 324 VVFIWDGLSPEP--KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS---------VDTGSQVCS 392 (484)
T ss_pred ceEeccCCCccc--cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc---------cccCCceee
Confidence 999999955433 343447999999999999 777899876 599999999998886432 222333347
Q ss_pred EEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcC
Q 016032 262 AEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 340 (396)
Q Consensus 262 ~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~ 340 (396)
+.|++.. .+++.. -|..++.|.||+..+-+.+..+.+|. ..+..+ +++|||..+++|+ |.++++|++
T Consensus 393 L~Wsk~~--------kEi~st--hG~s~n~i~lw~~ps~~~~~~l~gH~-~RVl~l-a~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 393 LIWSKKY--------KELLST--HGYSENQITLWKYPSMKLVAELLGHT-SRVLYL-ALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred EEEcCCC--------CEEEEe--cCCCCCcEEEEeccccceeeeecCCc-ceeEEE-EECCCCCEEEEecccCcEEeccc
Confidence 8999984 223321 47788899999999999999999988 557777 8999999999999 999999998
Q ss_pred CCc
Q 016032 341 KEK 343 (396)
Q Consensus 341 ~~~ 343 (396)
-..
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 765
No 60
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.4e-32 Score=222.85 Aligned_cols=253 Identities=15% Similarity=0.194 Sum_probs=207.5
Q ss_pred CccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCe
Q 016032 9 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 88 (396)
Q Consensus 9 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 88 (396)
.+.+++++.||..+|.+++|+++| .-++|++.|+.|++||++++++...+. ....++|+.|+|++.+.|++|+.|+.
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~k 323 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKK 323 (503)
T ss_pred CcceehhhhcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCc
Confidence 478899999999999999999999 569999999999999999999999985 56678999999996689999999999
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
|+.||+++++.+..+..+-. .|..+.|-+++..+++++.++.+++|+.+.+-.+........+ ...++.
T Consensus 324 i~~wDiRs~kvvqeYd~hLg---------~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~h--smP~~~ 392 (503)
T KOG0282|consen 324 IRQWDIRSGKVVQEYDRHLG---------AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMH--TMPCLT 392 (503)
T ss_pred EEEEeccchHHHHHHHhhhh---------heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhc--cCccee
Confidence 99999999998888755443 3999999999999999999999999999987766554444555 578999
Q ss_pred eccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CC--CCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCc
Q 016032 169 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH--KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 245 (396)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 245 (396)
.+| ++.++++-+.|+.|.++.+...-....-..+ +| .+.-..+.|||||.+|++|+.||.+.+||.++-++....
T Consensus 393 ~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l- 470 (503)
T KOG0282|consen 393 LHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL- 470 (503)
T ss_pred cCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-
Confidence 999 9999999999999999987532211111112 33 355677899999999999999999999999987764422
Q ss_pred ceeeccccccc-CCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEE
Q 016032 246 EIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 296 (396)
Q Consensus 246 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd 296 (396)
..+ ...+.+.|+|..++. ++ +++.+|.|++|+
T Consensus 471 --------kah~~~ci~v~wHP~e~Sk--------va---t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 --------KAHDQPCIGVDWHPVEPSK--------VA---TCGWDGLIKIWD 503 (503)
T ss_pred --------ccCCcceEEEEecCCCcce--------eE---ecccCceeEecC
Confidence 222 334578999986432 22 577999999996
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-31 Score=231.45 Aligned_cols=288 Identities=16% Similarity=0.200 Sum_probs=224.2
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
|+..=+.++..|.+|.++|..++|+|+++ ++++|+.|-.|+||+..+.++..++ .+|-.-|..+.|++. ..+++++|
T Consensus 36 WDYRM~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHhe-yPWIlSAS 112 (1202)
T KOG0292|consen 36 WDYRMGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHE-YPWILSAS 112 (1202)
T ss_pred ehhhhhhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCC-CceEEEcc
Confidence 66667788889999999999999999995 8999999999999999999998888 789999999999999 99999999
Q ss_pred CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCC----c--------
Q 016032 85 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS----G-------- 152 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~----~-------- 152 (396)
.|.+|+||+..+++++..+..+.. + |.|..|+|....+++++-|.+|++||+...+.. .
T Consensus 113 DDQTIrIWNwqsr~~iavltGHnH-------Y--VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 113 DDQTIRIWNWQSRKCIAVLTGHNH-------Y--VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred CCCeEEEEeccCCceEEEEecCce-------E--EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 999999999999999998865443 3 999999999999999999999999998542110 0
Q ss_pred -----cc---------eeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCC
Q 016032 153 -----EA---------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 218 (396)
Q Consensus 153 -----~~---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (396)
.+ ....+|.-.|+-++|+| .-.+|++|++|..|++|.+...+.-..-...+|.+.|.++-|+|..
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q 262 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ 262 (1202)
T ss_pred cccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc
Confidence 00 11234556799999999 8889999999999999999765443333334899999999999999
Q ss_pred CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCC-ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 219 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 219 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
.++++.+.|++|++||+.....+... .+... .+.++-+|. .++++ ++.|+-+.||-+
T Consensus 263 ~lIlSnsEDksirVwDm~kRt~v~tf---------rrendRFW~laahP~---------lNLfA----AgHDsGm~VFkl 320 (1202)
T KOG0292|consen 263 DLILSNSEDKSIRVWDMTKRTSVQTF---------RRENDRFWILAAHPE---------LNLFA----AGHDSGMIVFKL 320 (1202)
T ss_pred ceeEecCCCccEEEEecccccceeee---------eccCCeEEEEEecCC---------cceee----eecCCceEEEEE
Confidence 99999999999999999876654322 11111 134555665 45554 456666777766
Q ss_pred CccchhhhhcCCCCCCCcceeeeccCCcEEEeecCCcEEEEcCCCc
Q 016032 298 TTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEK 343 (396)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~~~~ 343 (396)
+..+ +.. +. ++..|....|..|+-+|+.+.
T Consensus 321 eREr-----------pa~---~v--~~n~LfYvkd~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 321 ERER-----------PAY---AV--NGNGLFYVKDRFIRSYDLRTQ 350 (1202)
T ss_pred cccC-----------ceE---EE--cCCEEEEEccceEEeeecccc
Confidence 4322 222 12 334444444788888888774
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-30 Score=207.19 Aligned_cols=288 Identities=17% Similarity=0.259 Sum_probs=219.3
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC--CcEEEEEeCCCeEEEEECCC
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--DGTVYAASSDGTVSCTDLET 96 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~ 96 (396)
|.+-|.++...+ ..+++|++||.+++||....... .+ .+|.++|.+++|.-.+ ...|++++.|.++++|.++.
T Consensus 104 hdDWVSsv~~~~---~~IltgsYDg~~riWd~~Gk~~~-~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGAS---KWILTGSYDGTSRIWDLKGKSIK-TI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhcccC---ceEEEeecCCeeEEEecCCceEE-EE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 888999998873 57999999999999998764443 44 6799999998886441 23599999999999999998
Q ss_pred CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCC----------------------CCccc
Q 016032 97 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNS----------------------RSGEA 154 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~----------------------~~~~~ 154 (396)
++.......... +| ...|.+++..+++..+++|+.|..|.+|+..... ....+
T Consensus 179 ~~~~~~~~~~~~---GH--k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 179 GENKVKALKVCR---GH--KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred chhhhhHHhHhc---cc--ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 865443322111 22 2349999999999999999999999999932210 00112
Q ss_pred eeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 016032 155 ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234 (396)
Q Consensus 155 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 234 (396)
.....|..+|.++.|++ ...+++++.|.+|+.||+.++.....+ .....++++..+|..++|++|+.|..|++||
T Consensus 254 vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~---~~~ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTL---TTNKSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeee---ecCcceeEeecccccceeeecCCCCceeecC
Confidence 34556777999999996 788999999999999999876554443 3567899999999999999999999999999
Q ss_pred cccccccCCCcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccc-hhhhhcCCCCC
Q 016032 235 SIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-LVAEVMDPNIT 312 (396)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~ 312 (396)
.+++.-. .....+.+|..- -.+.|+|... ..++ +|+.|+++++||+++.. .++.+.+|. .
T Consensus 329 PR~~~gs------~v~~s~~gH~nwVssvkwsp~~~--------~~~~---S~S~D~t~klWDvRS~k~plydI~~h~-D 390 (423)
T KOG0313|consen 329 PRTGDGS------VVSQSLIGHKNWVSSVKWSPTNE--------FQLV---SGSYDNTVKLWDVRSTKAPLYDIAGHN-D 390 (423)
T ss_pred CCCCCCc------eeEEeeecchhhhhheecCCCCc--------eEEE---EEecCCeEEEEEeccCCCcceeeccCC-c
Confidence 9987432 122333334332 2688999842 2222 78999999999999887 888888886 7
Q ss_pred CCcceeeeccCCcEEEeec-CCcEEEEcCC
Q 016032 313 TISPVNKLHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 313 ~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
.+.++ .|. ++.+|++|+ |.+|+|+.-.
T Consensus 391 Kvl~v-dW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 391 KVLSV-DWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEE-ecc-CCceEEeccCcceEEEeccc
Confidence 77776 675 566899999 9999998643
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=229.72 Aligned_cols=287 Identities=17% Similarity=0.225 Sum_probs=227.2
Q ss_pred eeecc-ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEE
Q 016032 14 AVIRY-HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCT 92 (396)
Q Consensus 14 ~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 92 (396)
..+.+ |...+.+..|. ++ .+++++.|++|++|+..++........+|.+.|.++++..- +..+++|+.|.++++|
T Consensus 201 ~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeE
Confidence 44444 66788999998 33 69999999999999999998888855899999999999875 8899999999999999
Q ss_pred ECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC
Q 016032 93 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 172 (396)
|..+|++...+..+... +.++.. ....+++|+.|.+|++|++.++..... ...|..+|.++..+
T Consensus 277 d~~sg~C~~~l~gh~st---------v~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l---~~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSS---------VRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNL---LRGHTGPVNCVQLD-- 340 (537)
T ss_pred ecCCCcEEEEecCCCce---------EEEEEc--cCceEeeccCCceEEEEeccCcceEEE---eccccccEEEEEec--
Confidence 99999999999765543 666655 456678889999999999998765532 22377799999995
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccc-cccCCCcceeecc
Q 016032 173 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG-NLDSPSREIVHSH 251 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~ 251 (396)
+.++++|+.|++|++||+.+.+....+. +|...|.++.+.+. ..+++|+.|++|++||+++. +++....
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~--gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~------ 410 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLS--GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ------ 410 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeec--CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc------
Confidence 6899999999999999998655544443 69999999988655 89999999999999999988 5533221
Q ss_pred cccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec
Q 016032 252 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 331 (396)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~ 331 (396)
.+.. ....+...++++. +++.|++|++||..+++++..+.+++...+..+ ......+++++
T Consensus 411 ---~h~~----------~v~~l~~~~~~Lv---s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l---~~~~~~il~s~ 471 (537)
T KOG0274|consen 411 ---GHTS----------LVSSLLLRDNFLV---SSSADGTIKLWDAEEGECLRTLEGRHVGGVSAL---ALGKEEILCSS 471 (537)
T ss_pred ---CCcc----------cccccccccceeE---eccccccEEEeecccCceeeeeccCCcccEEEe---ecCcceEEEEe
Confidence 1111 1122333366777 899999999999999999999988644666644 33235555655
Q ss_pred -CCcEEEEcCCCcceeeec
Q 016032 332 -SRSIFIWRPKEKSELVEQ 349 (396)
Q Consensus 332 -d~~i~iw~~~~~~~~~~~ 349 (396)
|+.+++||+.+++..+.+
T Consensus 472 ~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cCCeeEEEecccCchhhhh
Confidence 999999999999988876
No 64
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.4e-30 Score=194.29 Aligned_cols=249 Identities=14% Similarity=0.241 Sum_probs=190.9
Q ss_pred ccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc--eeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 17 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 17 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
.+|+..|.+++|+|.| ++|++++.|.++.||.-..+ ++...+ .||...|.+++|+++ +.+||+++.|++|-||.+
T Consensus 58 ~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~s-G~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSAS-GNYLATCSRDKSVWIWEI 134 (312)
T ss_pred ccchheeeeeeecCCC-cEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCC-CCEEEEeeCCCeEEEEEe
Confidence 4699999999999999 69999999999999987754 344444 799999999999999 999999999999999999
Q ss_pred CCCc---ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 95 ETGL---ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 95 ~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
..+. +...++.+.+. |..+.|+|...+|++++.|.+|++|.-.....-........+...|.+++|++
T Consensus 135 deddEfec~aVL~~HtqD---------VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQD---------VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred cCCCcEEEEeeecccccc---------ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 8554 44445444433 88899999999999999999999998774332223334556666899999999
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecc
Q 016032 172 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 251 (396)
Q Consensus 172 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 251 (396)
.+..|++++.|++++||-..+ .+ ...|...+..++|. ...|++++.|+.|++|.-... ...|.-..+...
T Consensus 206 -~G~rl~s~sdD~tv~Iw~~~~-----~~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~-~d~p~~~l~~~~ 275 (312)
T KOG0645|consen 206 -IGSRLVSCSDDGTVSIWRLYT-----DL-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS-PDEPSWNLLAKK 275 (312)
T ss_pred -CCceEEEecCCcceEeeeecc-----Cc-chhcccceEeeeec--ccceEeccCCCEEEEEEecCC-CCCchHHHHHhh
Confidence 899999999999999998652 12 12478899999997 558999999999999987632 122222222211
Q ss_pred cccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 252 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
........-.+.|+|.. ...++ +|+.||.|++|.+.
T Consensus 276 ~~aHe~dVNsV~w~p~~--------~~~L~---s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 276 EGAHEVDVNSVQWNPKV--------SNRLA---SGGDDGIVNFWELE 311 (312)
T ss_pred hcccccccceEEEcCCC--------CCcee---ecCCCceEEEEEec
Confidence 22222233478999953 33344 68999999999874
No 65
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.6e-30 Score=224.54 Aligned_cols=211 Identities=16% Similarity=0.305 Sum_probs=165.4
Q ss_pred eeccccCCeEEEEecC-CCCcEEEEEeCCCcEEEeecccce-------eeeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 15 VIRYHSRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKVS-------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
.+.+|.+.|++++|+| ++ .+|++|+.|++|+|||+.+.. ....+ .+|...|.+++|+|...++|++++.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 5789999999999999 55 689999999999999997642 22333 78999999999999845799999999
Q ss_pred CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCc-cEE
Q 016032 87 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS-KVV 165 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-~i~ 165 (396)
++|++||+.+++....+..+.. .|.+++|+|++.+|++++.|+.|++||++++..... ...|.. ...
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~---------~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t---l~~H~~~~~~ 215 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSD---------QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS---VEAHASAKSQ 215 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCC---------ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE---EecCCCCcce
Confidence 9999999999887766654433 299999999999999999999999999998765432 223322 345
Q ss_pred EEEeccCCCCEEEEee----CCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEe-CCCcEEEEEcccccc
Q 016032 166 GLHCNPIQPELLLSCG----NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNL 240 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 240 (396)
.+.|.+ ++..+++++ .|+.|++||+++...............+....|++++.+|++++ .|+.|++||+.+++.
T Consensus 216 ~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 216 RCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 677888 666666543 47899999998654322222223445566778999999998887 599999999998765
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.9e-30 Score=212.08 Aligned_cols=284 Identities=18% Similarity=0.244 Sum_probs=222.2
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
..+.|.+++|+|..+.-+|+.+. -.+.||+..+......+ ......|.+++|-.| +.+|++|...|.|++||+.+..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHH
Confidence 34689999999987655666553 47999999887666655 347788999999999 9999999999999999977766
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
.+..+..+..+ +....|+|++ ..+++|+.|+.+++||+.+... ......|...|.+.+|+|.++.++
T Consensus 102 iLR~~~ah~ap---------v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 102 ILRQLYAHQAP---------VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHHHHhhccCc---------eeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccCCCeEE
Confidence 66666555443 8889999975 5667788888999999998763 335667777999999999888899
Q ss_pred EEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccC
Q 016032 178 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL 257 (396)
Q Consensus 178 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
++|+.||.|++||++... ..+..+.|..+|..+.+-|.|.++++++. +.+++||+.+|...-.. -.+.+.
T Consensus 170 vtGsYDg~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~-------~~~H~K 239 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS-------MFNHNK 239 (487)
T ss_pred EecCCCceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh-------hhcccc
Confidence 999999999999999754 45566789999999999999999999874 58999999976643211 111222
Q ss_pred CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEE
Q 016032 258 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIF 336 (396)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~ 336 (396)
+..++.+..+ +..+. +|+-|+.+++||+.+-+.+..+.-+ +++.++ +.+|+++.++.|. ||.+.
T Consensus 240 tVTcL~l~s~---------~~rLl---S~sLD~~VKVfd~t~~Kvv~s~~~~--~pvLsi-avs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 240 TVTCLRLASD---------STRLL---SGSLDRHVKVFDTTNYKVVHSWKYP--GPVLSI-AVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred eEEEEEeecC---------CceEe---ecccccceEEEEccceEEEEeeecc--cceeeE-EecCCCceEEEecccceee
Confidence 2234444443 44455 7999999999999888888877655 678888 8999999999998 89887
Q ss_pred EEcCCC
Q 016032 337 IWRPKE 342 (396)
Q Consensus 337 iw~~~~ 342 (396)
+=+...
T Consensus 305 ~rr~~~ 310 (487)
T KOG0310|consen 305 IRRREV 310 (487)
T ss_pred eehhhc
Confidence 764433
No 67
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.98 E-value=2.8e-30 Score=198.27 Aligned_cols=296 Identities=19% Similarity=0.304 Sum_probs=223.5
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee----------ee----EecCCcccceeEEEEecCCCcEE
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----------KI----VYGNIHSCIVNNIRFNPTNDGTV 80 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~----~~~~~~~~~v~~~~~~~~~~~~l 80 (396)
..+-|.+.|+++...+...+++++|+.||.|.|||+++... .. ....+|...|..+.|.|-...+|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 44569999999999998779999999999999999976431 01 11257888999999999878899
Q ss_pred EEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC---CCEEEEEecCCeEEEEeCCCCCCCccceee
Q 016032 81 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADNFGFLYLVDARTNSRSGEAILI 157 (396)
Q Consensus 81 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~ 157 (396)
.+++.|.++++||..+-+....++.+.. |++-+++|- ..++++|..+-.|++.|+.++.... ..
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~----------VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~L 184 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGK----------VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TL 184 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCce----------eehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---ee
Confidence 9999999999999999998888876644 777778774 3577888888999999999987664 34
Q ss_pred ecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCC------------CCCccc-cCCCCCceeEEEEcCCCCEEEEE
Q 016032 158 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE------------AGSSLC-DLPHKRVVNSAYFSPSGSKILTT 224 (396)
Q Consensus 158 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------------~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~ 224 (396)
..|...|.++.|+|...-.|++|+.||.|++||+|... ....++ ...|.+.|+.++|+.++.+++++
T Consensus 185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 55666899999999777788999999999999998531 112222 23688999999999999999999
Q ss_pred eCCCcEEEEEcccccccC-CCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchh
Q 016032 225 SQDNRLRIWDSIFGNLDS-PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV 303 (396)
Q Consensus 225 ~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~ 303 (396)
+.|..+++|+...|+-.. +.....+... ....+.+. +-+ .+.++.. -.++.+.++++-+|..+
T Consensus 265 gtd~r~r~wn~~~G~ntl~~~g~~~~n~~---~~~~~~~~-~~~--------s~vfv~~----p~~~~lall~~~sgs~i 328 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNTLREFGPIIHNQT---TSFAVHIQ-SMD--------SDVFVLF----PNDGSLALLNLLEGSFV 328 (397)
T ss_pred cCccceEEeecccCccccccccccccccc---ccceEEEe-ecc--------cceEEEE----ecCCeEEEEEccCceEE
Confidence 999999999999887422 1111111110 00001111 000 1222221 23377999999999999
Q ss_pred hhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCC
Q 016032 304 AEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
..+..|. ..+.+. ++.|+-+.+.+|+ |+.|..|-+.
T Consensus 329 r~l~~h~-k~i~c~-~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 329 RRLSTHL-KRINCA-AYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred Eeeeccc-ceeeEE-eecCchhhhhccccCCcccccccc
Confidence 9888884 566655 7999999999999 9999999873
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=9.7e-30 Score=205.01 Aligned_cols=283 Identities=16% Similarity=0.195 Sum_probs=224.8
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc
Q 016032 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 100 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 100 (396)
..|+++...|.. ..++||+.|..+.++|...++.+..+ .||...|+.+.|+|+ ...+++++.|..|++|........
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCc
Confidence 578899999874 46999999999999999998888877 899999999999999 899999999999999998877766
Q ss_pred ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEe
Q 016032 101 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 180 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 180 (396)
.....+... |+.+..+|.|.||++++.++...+.|++++........ ...+-.+++++|+| |+.+|.+|
T Consensus 297 ~~~~~h~~~---------V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHp-DgLifgtg 365 (506)
T KOG0289|consen 297 TSSRPHEEP---------VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHP-DGLIFGTG 365 (506)
T ss_pred ccccccccc---------ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcC-CceEEecc
Confidence 555544433 99999999999999999999999999999876543221 12334699999999 99999999
Q ss_pred eCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCce
Q 016032 181 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF 260 (396)
Q Consensus 181 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (396)
..|+.|++||+.+...... ..+|.++|..++|+.+|-+|++++.|+.|++||++.-+..... .........
T Consensus 366 t~d~~vkiwdlks~~~~a~--Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~-------~l~~~~~v~ 436 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAK--FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI-------QLDEKKEVN 436 (506)
T ss_pred CCCceEEEEEcCCcccccc--CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee-------eccccccce
Confidence 9999999999987554322 2379999999999999999999999999999999876643321 111111223
Q ss_pred eEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC--ccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEE
Q 016032 261 RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT--TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFI 337 (396)
Q Consensus 261 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~i 337 (396)
.+.|++. |.|+. .++.+=+|++++-. +.+++..+..|. +...++ .|....+++++++ |..+++
T Consensus 437 s~~fD~S---------Gt~L~---~~g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v-~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 437 SLSFDQS---------GTYLG---IAGSDLQVYICKKKTKSWTEIKELADHS-GLSTGV-RFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred eEEEcCC---------CCeEE---eecceeEEEEEecccccceeeehhhhcc-ccccee-eecccceEEeeccchhheEE
Confidence 5667666 88887 55655556666532 556666666665 456666 8999999999999 998888
Q ss_pred EcC
Q 016032 338 WRP 340 (396)
Q Consensus 338 w~~ 340 (396)
+.+
T Consensus 503 ~a~ 505 (506)
T KOG0289|consen 503 YAL 505 (506)
T ss_pred eec
Confidence 754
No 69
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=3e-30 Score=199.86 Aligned_cols=300 Identities=15% Similarity=0.212 Sum_probs=217.3
Q ss_pred eEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccce
Q 016032 23 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL 102 (396)
Q Consensus 23 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 102 (396)
-.|+.|++-| .+||+|+.||.|.|||+.+......+ .+|..+|.+++|+++ +..|++++.|..|.+||+..|.++..
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC-CCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999 69999999999999999987755555 789999999999999 99999999999999999999999998
Q ss_pred eecCCCCCCCCCcceeeeEEEeCCCCCE-EEEEecCCeEEEEeCCCCCCCccceeeec---CCccEEEEEeccCCCCEEE
Q 016032 103 MNVNPNGWHGPRTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIHR---KGSKVVGLHCNPIQPELLL 178 (396)
Q Consensus 103 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~i~d~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~ 178 (396)
+.++.. |..+.|+|.... .++.-.+..-.+.++..+.. ....... ......+..|.+ .|++++
T Consensus 103 irf~sp----------v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr-~g~yIi 169 (405)
T KOG1273|consen 103 IRFDSP----------VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDR-RGKYII 169 (405)
T ss_pred EEccCc----------cceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccC-CCCEEE
Confidence 887644 888999996433 33332333334444433211 1111111 011122335778 899999
Q ss_pred EeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccC-
Q 016032 179 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL- 257 (396)
Q Consensus 179 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~- 257 (396)
+|...|.+.++|..+.+....++. .....|..+.++..|+.|+.-+.|..|+.|+++.--......++...+.+...+
T Consensus 170 tGtsKGkllv~~a~t~e~vas~ri-ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRI-TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred EecCcceEEEEecchheeeeeeee-chheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 999999999999987665444432 224678999999999999999999999999987322111111111111111111
Q ss_pred --CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeecCCcE
Q 016032 258 --TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSI 335 (396)
Q Consensus 258 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~d~~i 335 (396)
.--+++|+.+ |.|+.+. ......++||....|.+++.+.+........+ .|+|-...+++-..|.+
T Consensus 249 k~~Wk~ccfs~d---------geYv~a~--s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV-~whp~rp~i~si~sg~v 316 (405)
T KOG1273|consen 249 KLQWKKCCFSGD---------GEYVCAG--SARAHALYIWEKSIGSLVKILHGTKGEELLDV-NWHPVRPIIASIASGVV 316 (405)
T ss_pred hhhhhheeecCC---------ccEEEec--cccceeEEEEecCCcceeeeecCCchhheeec-ccccceeeeeeccCCce
Confidence 1114666665 8888742 24567899999999999999998887777778 89999999999888999
Q ss_pred EEEcCCCcceeeeccc
Q 016032 336 FIWRPKEKSELVEQKE 351 (396)
Q Consensus 336 ~iw~~~~~~~~~~~~~ 351 (396)
+||....-+....+..
T Consensus 317 ~iw~~~~~enwsafAP 332 (405)
T KOG1273|consen 317 YIWAVVQVENWSAFAP 332 (405)
T ss_pred EEEEeecccchhhcCc
Confidence 9999876655444443
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=2.1e-29 Score=216.25 Aligned_cols=258 Identities=13% Similarity=0.224 Sum_probs=212.5
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
.+|...|.+++++.+ ...+++|+ .+.+++|+..+.++++++... .+.+..|-|.++++++|..+|.+
T Consensus 370 ~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----------y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSD-SILLASGA-GESIKIWNRDTLKCIRTITCG-----------YILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred ccchhheeEEEeecC-ceeeeecC-CCcEEEEEccCcceeEEeccc-----------cEEEEEecCCCceEEEeccCCce
Confidence 367888999999987 55555555 678999999999999988653 28899999999999999999999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC--CCc---c-----ccCCCCCcee
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA--GSS---L-----CDLPHKRVVN 210 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~---~-----~~~~~~~~i~ 210 (396)
.+||+.+....... ..|.+.|.+++.+| ++..+++|+.|.+|++||..-... +.. + ..+.-...|.
T Consensus 437 ~vfdlaS~~l~Eti---~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 437 QVFDLASASLVETI---RAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred EEEEeehhhhhhhh---hccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 99999987766433 36677899999999 999999999999999999742111 111 1 1223567899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccc
Q 016032 211 SAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAAL 289 (396)
Q Consensus 211 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d 289 (396)
|+.+||||++|+++--|+++++|-+++-++. ....+|.-| +++..+|+ +.+++ +|+.|
T Consensus 513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf---------lsLYGHkLPV~smDIS~D---------Skliv---TgSAD 571 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF---------LSLYGHKLPVLSMDISPD---------SKLIV---TGSAD 571 (888)
T ss_pred EEEEcCCCcEEEEEeccCeEEEEEecceeee---------eeecccccceeEEeccCC---------cCeEE---eccCC
Confidence 9999999999999999999999999876652 233344443 57778887 77777 89999
Q ss_pred cceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEe
Q 016032 290 HPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 358 (396)
Q Consensus 290 ~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~ 358 (396)
.+|++|-+.=|.+...+..|. ..+.++ .|-|...++.+++ |+.|+-||-..-+.++.+.+|...+.|
T Consensus 572 KnVKiWGLdFGDCHKS~fAHd-DSvm~V-~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 572 KNVKIWGLDFGDCHKSFFAHD-DSVMSV-QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred CceEEeccccchhhhhhhccc-CceeEE-EEcccceeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence 999999999999999999887 788888 8999999999999 999999999999999999988775544
No 71
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.2e-29 Score=221.21 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=162.8
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee-------eeEecCCcccceeEEEEecCCC
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-------KIVYGNIHSCIVNNIRFNPTND 77 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~ 77 (396)
|.......+..+.+|.+.|.+++|+|+.+.+|++|+.||+|+|||+.+... ......+|...|.+++|+|++.
T Consensus 59 ~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~ 138 (568)
T PTZ00420 59 ENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY 138 (568)
T ss_pred eecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC
Confidence 444455567889999999999999997447899999999999999975421 1122367999999999999834
Q ss_pred cEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceee
Q 016032 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI 157 (396)
Q Consensus 78 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~ 157 (396)
..|++++.|++|++||+++++....+..+ ..|.+++|+|+|.+|++++.|+.|++||++++..... .
T Consensus 139 ~iLaSgS~DgtIrIWDl~tg~~~~~i~~~----------~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t---l 205 (568)
T PTZ00420 139 YIMCSSGFDSFVNIWDIENEKRAFQINMP----------KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS---F 205 (568)
T ss_pred eEEEEEeCCCeEEEEECCCCcEEEEEecC----------CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE---E
Confidence 45679999999999999998866555321 1289999999999999999999999999998765532 2
Q ss_pred ecCCccEE-----EEEeccCCCCEEEEeeCCC----cEEEEecCCCCCCCccccC---CCCCceeEEEEcCCCCEEEEEe
Q 016032 158 HRKGSKVV-----GLHCNPIQPELLLSCGNDH----FARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTS 225 (396)
Q Consensus 158 ~~~~~~i~-----~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~ 225 (396)
..|.+.+. ...|++ ++.+|++++.++ .|+|||++.... .+... .+.+.+......+++.++++|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~--pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTS--ALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred ecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCC--ceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 33333332 223457 778888877664 799999986332 22222 2233333333445688999999
Q ss_pred CCCcEEEEEccccc
Q 016032 226 QDNRLRIWDSIFGN 239 (396)
Q Consensus 226 ~d~~i~iwd~~~~~ 239 (396)
.|+.|++|++..+.
T Consensus 283 GD~tIr~~e~~~~~ 296 (568)
T PTZ00420 283 GDGNCRYYQHSLGS 296 (568)
T ss_pred CCCeEEEEEccCCc
Confidence 99999999998664
No 72
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=6.1e-29 Score=209.70 Aligned_cols=259 Identities=22% Similarity=0.328 Sum_probs=206.4
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
.+|..+|.+++|+|+ +.+|++++.+|.|++|++.+++....+..+.. .+..+.|+|+++.+++++.+|.|
T Consensus 6 ~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 6 KGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTG---------PVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred cccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc---------ceeEEEECCCCCEEEEEcCCCeE
Confidence 479999999999999 89999999999999999998876555544332 27799999999999999999999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCE
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 220 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (396)
++|++..+.... ....+...+.++.|+| ++.++++++.++.|++||+++.+....+. .|...|.+++|+|++.+
T Consensus 76 ~i~~~~~~~~~~---~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 76 RLWDLETGECVR---TLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLR--GHTDWVNSVAFSPDGTF 149 (289)
T ss_pred EEEEcCcccceE---EEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEec--cCCCcEEEEEEcCcCCE
Confidence 999999864433 2334455799999999 78888888889999999998544433332 57888999999999999
Q ss_pred EEEEeCCCcEEEEEcccccccCCCcceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc
Q 016032 221 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 299 (396)
Q Consensus 221 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~ 299 (396)
+++++.++.|++||+++++...... .+. ....+.|+|+ ++.++ .++.++.|++||+.+
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~~~~~---------~~~~~i~~~~~~~~---------~~~l~---~~~~~~~i~i~d~~~ 208 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCVATLT---------GHTGEVNSVAFSPD---------GEKLL---SSSSDGTIKLWDLST 208 (289)
T ss_pred EEEEcCCCcEEEEEccccccceeEe---------cCccccceEEECCC---------cCEEE---EecCCCcEEEEECCC
Confidence 9988889999999998766533211 111 2346788887 54555 456699999999999
Q ss_pred cchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEe
Q 016032 300 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 358 (396)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~ 358 (396)
++.+..+..+. ..+..+ +|+|++.++++++ |+.|++|++.+++.+..+..+...+.+
T Consensus 209 ~~~~~~~~~~~-~~i~~~-~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~ 266 (289)
T cd00200 209 GKCLGTLRGHE-NGVNSV-AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS 266 (289)
T ss_pred CceecchhhcC-CceEEE-EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEE
Confidence 88888876654 577777 8999999999999 999999999999888888877654443
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.9e-29 Score=193.04 Aligned_cols=268 Identities=16% Similarity=0.198 Sum_probs=209.7
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec--CC
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN--FG 138 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~g 138 (396)
......|+++.|+++ +..+++++.|.+|++||..++..+..+....-+ +..++|....+.++.++. |.
T Consensus 11 ~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skkyG---------~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 11 RETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG---------VDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred ccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeeccccc---------ccEEEEecCCceEEEccCCCCC
Confidence 335788999999999 999999999999999999999999888765544 777788877777777776 78
Q ss_pred eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCC
Q 016032 139 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 218 (396)
Q Consensus 139 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (396)
.|+..++.+.+.+. .+.+|...|++++.+| .++.+++++.|++|++||+|..++.-.+. ...-..++|+|+|
T Consensus 81 tIryLsl~dNkylR---YF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----~~~~pi~AfDp~G 152 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLR---YFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLN----LSGRPIAAFDPEG 152 (311)
T ss_pred ceEEEEeecCceEE---EcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEe----cCCCcceeECCCC
Confidence 99999999977654 4567777999999999 77999999999999999999655544432 2333558999999
Q ss_pred CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 219 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 219 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
-++|++...+.|++||++.-.. .|...+... ......--.+.|+|+ |+++. .+...+.+++.|.-
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dk-gPF~tf~i~--~~~~~ew~~l~FS~d---------GK~iL---lsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDK-GPFTTFSIT--DNDEAEWTDLEFSPD---------GKSIL---LSTNASFIYLLDAF 217 (311)
T ss_pred cEEEEecCCCeEEEEEecccCC-CCceeEccC--CCCccceeeeEEcCC---------CCEEE---EEeCCCcEEEEEcc
Confidence 9999999888999999986532 122222111 112222236889998 88887 67788899999999
Q ss_pred ccchhhhhcCCCCCC-CcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeecccc-ceEEEeecC
Q 016032 299 TGQLVAEVMDPNITT-ISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE-MKIIVCGKA 361 (396)
Q Consensus 299 ~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~ 361 (396)
+|..+.++.++.... +..-++|+|+++++++|+ ||+|.+|+++++..+..+.++ ...+.|...
T Consensus 218 ~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f 283 (311)
T KOG1446|consen 218 DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF 283 (311)
T ss_pred CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc
Confidence 999998888765443 222226999999999999 899999999999999999884 555566543
No 74
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.8e-29 Score=235.86 Aligned_cols=252 Identities=15% Similarity=0.195 Sum_probs=192.7
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
+...|.+++|+|....+|++++.||+|+|||+.++.....+ .+|...|++++|+|.++.+|++|+.|++|++||+.++.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 34689999999864478999999999999999988777666 68999999999997438899999999999999999988
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeC-CCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDIN-PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
.+..+.... .+.++.|+ +++.+|++|+.||.|++||++....... ....|...|.++.|. ++.+|
T Consensus 610 ~~~~~~~~~----------~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~--~~~~h~~~V~~v~f~--~~~~l 675 (793)
T PLN00181 610 SIGTIKTKA----------NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC--TMIGHSKTVSYVRFV--DSSTL 675 (793)
T ss_pred EEEEEecCC----------CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce--EecCCCCCEEEEEEe--CCCEE
Confidence 776664321 28889995 5799999999999999999987643222 334566689999996 57889
Q ss_pred EEeeCCCcEEEEecCCCCC---CCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCc----ceee
Q 016032 178 LSCGNDHFARIWDIRRLEA---GSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR----EIVH 249 (396)
Q Consensus 178 ~~~~~d~~i~~wd~~~~~~---~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~ 249 (396)
++++.|++|++||++.... ...+..+ +|...+.+++|+|++.+|++|+.|+.|++|+........... ....
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 9999999999999975321 1223333 688889999999999999999999999999986543211000 0000
Q ss_pred ccccccc-CCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 250 SHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 250 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
......+ .....++|+|+ +.+++ +|+.+|.|+||++
T Consensus 756 ~~~~~~~~~~V~~v~ws~~---------~~~lv---a~~~dG~I~i~~~ 792 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQ---------SSTLV---AANSTGNIKILEM 792 (793)
T ss_pred ccccCCCCcEEEEEEEcCC---------CCeEE---EecCCCcEEEEec
Confidence 0001111 12357889987 66777 7899999999996
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.2e-29 Score=200.17 Aligned_cols=279 Identities=15% Similarity=0.124 Sum_probs=213.5
Q ss_pred cCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc---cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec
Q 016032 60 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 136 (396)
Q Consensus 60 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 136 (396)
...|...|.-+.|+++ |.+||+++.|.+..+|.+..... ..++..+.. .|..+.|+||.+++++++.
T Consensus 220 l~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~---------~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ---------PVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred HhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccC---------ceEEEEECCCCCeEEecCc
Confidence 3679999999999999 99999999999999999876544 233322222 3999999999999999999
Q ss_pred CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC
Q 016032 137 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 216 (396)
Q Consensus 137 ~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (396)
+..+.+||..++........ .++..+.+.+|.| ++..+++|+.|+.+..||+...... .... .....|.+++.++
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~--~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~-~W~g-vr~~~v~dlait~ 364 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPS--GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG-NWEG-VRDPKVHDLAITY 364 (519)
T ss_pred hHheeeccCCcchhhhhccc--CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-cccc-cccceeEEEEEcC
Confidence 99999999999876644322 2456899999999 9999999999999999999743221 1111 2335699999999
Q ss_pred CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEE
Q 016032 217 SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 296 (396)
Q Consensus 217 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd 296 (396)
||+++++.+.|..|++|+..+...... ...+....+...+.+ |+|+. ..-.+..|++||
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~l---------ise~~~its~~iS~d---------~k~~L---vnL~~qei~LWD 423 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGL---------ISEEQPITSFSISKD---------GKLAL---VNLQDQEIHLWD 423 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhcc---------ccccCceeEEEEcCC---------CcEEE---EEcccCeeEEee
Confidence 999999999999999999876544221 111111123444444 67766 456778899999
Q ss_pred cCccchhhhhcCCCCCCCcceeeecc-CCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEeecCCCccccccCCCCC
Q 016032 297 ITTGQLVAEVMDPNITTISPVNKLHP-RDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKADKKQKHKFGDESE 374 (396)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 374 (396)
++..+.+..+.+|..+...--.+|-- +..++++|+ |+.|+||+..+|+++..+.+|..-+.|..........+..-.|
T Consensus 424 l~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 424 LEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred cchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 99999999999987554432224644 448999999 9999999999999999999999999987776666555544333
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.1e-29 Score=223.97 Aligned_cols=301 Identities=15% Similarity=0.200 Sum_probs=221.4
Q ss_pred cCCeEEEEecCCCCcEEEEEe--CCCcEEEeecccc-----------eeeeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 20 SRRVTCLEFHPTNNHILLSGD--KKGQVGVWDFYKV-----------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
...|.++..+|++ ..+|||+ .||.++||+...- .........|.+.|+|+.|+|+ +.+||+|+.|
T Consensus 13 ~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD 90 (942)
T KOG0973|consen 13 EKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASGSDD 90 (942)
T ss_pred CeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC-CCeEeeccCc
Confidence 3459999999999 5799999 8999999997531 1112222569999999999999 9999999999
Q ss_pred CeEEEEECCCC------------------cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCC
Q 016032 87 GTVSCTDLETG------------------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN 148 (396)
Q Consensus 87 g~v~iwd~~~~------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~ 148 (396)
+.|.||..... +....+..+ ...|..++|+|++.++++++.|+.|.+|+.++.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H---------~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH---------DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecC---------CCccceeccCCCccEEEEecccceEEEEccccc
Confidence 99999998731 011122222 233899999999999999999999999999998
Q ss_pred CCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC----CCCCceeEEEEcCCCCEEEEE
Q 016032 149 SRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL----PHKRVVNSAYFSPSGSKILTT 224 (396)
Q Consensus 149 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~ 224 (396)
+... ....|.+.|-.+.|.| -|++|++-+.|++|++|++.+....+.+... .....+..+.|||||.+|++.
T Consensus 162 ~~~~---vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 162 ELLK---VLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred eeee---eeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 4432 4455666899999999 9999999999999999997654443333322 334568899999999999986
Q ss_pred eC----CCcEEEEEcccccccCCCcceeecccccccCCc-eeEEeCCCCCCCcee----eEe-eeeeeecccccccceEE
Q 016032 225 SQ----DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLA----VIG-RYISENYNGAALHPIDF 294 (396)
Q Consensus 225 ~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~g-~~~~~~~~g~~d~~i~v 294 (396)
.. -.++.|.+-.+.+. ...+-+|..+ ..+.|+|.-...... ..+ .+.....+|+.|++|-|
T Consensus 238 nA~n~~~~~~~IieR~tWk~---------~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKV---------DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred hhccCCcceeEEEecCCcee---------eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 53 34677777665553 2233344433 246677752111110 001 11122238999999999
Q ss_pred EEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcce
Q 016032 295 IDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSE 345 (396)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~ 345 (396)
|.....+++.....-....|..+ +|+|||..|..++ ||+|.+...+..+.
T Consensus 309 W~T~~~RPl~vi~~lf~~SI~Dm-sWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNKSIVDM-SWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred EecCCCCchhhhhhhhcCceeee-eEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 99988888777665556778888 8999999999999 99999999887653
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=5.4e-29 Score=202.00 Aligned_cols=269 Identities=19% Similarity=0.271 Sum_probs=198.0
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee---------EecCCcccceeEEEEecCCCcEEEEEe
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI---------VYGNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
...--|.+.|+.+.+-|+.+.++|+++..+.|.|||..+..... ..+.+|...-++++|++.....|++++
T Consensus 118 ~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 118 SQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred EEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc
Confidence 33445999999999999999999999999999999987532111 133679888899999999888999999
Q ss_pred CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 85 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
.|++|++||+...........+...+.++. ..|..++|++- ...+++++.|+.+.|||++++ ..........|...
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHE--DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAE 274 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCC--cceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCc
Confidence 999999999986544211111111122222 33899999986 567788899999999999974 22222345667779
Q ss_pred EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEccccccc
Q 016032 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLD 241 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~ 241 (396)
+.|++|+|.++.+||+|+.|++|.+||+|+... .+..+ +|...|.+|.|+| ....||+++.|+.+.+||+..-...
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999999999999999999999999999998655 44444 8999999999999 5667899999999999999754332
Q ss_pred CC-----CcceeecccccccCC-ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 242 SP-----SREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 242 ~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
++ ...........+|.. .....|+|..+ ..++ +.+.|+.++||.+.
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP--------W~I~---SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP--------WTIA---SVAEDNILQIWQMA 404 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCC--------eEEE---EecCCceEEEeecc
Confidence 21 000111112223322 23688999863 2333 67889999999985
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.6e-28 Score=188.35 Aligned_cols=273 Identities=15% Similarity=0.239 Sum_probs=204.5
Q ss_pred EEEEeCCCcEEEeecccce------------eeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccccee
Q 016032 36 LLSGDKKGQVGVWDFYKVS------------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 103 (396)
Q Consensus 36 l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 103 (396)
+++|++...|.=+++.... ....+ ..|.++|++++.+ +.++++|+.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~-~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF-SAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccc-cccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce
Confidence 5667776666666554321 12222 6799999999997 789999999999999999998887777
Q ss_pred ecCCCCCCCCCcceeeeEEEeCCCCC--EEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee
Q 016032 104 NVNPNGWHGPRTWRMLYGMDINPEKG--VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 181 (396)
Q Consensus 104 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 181 (396)
..+.. .|+++.|.+... .|++|+.||.|.+|+........ ....|...|+.++.+| .+.+.++.+
T Consensus 80 l~Hag---------sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~---slK~H~~~Vt~lsiHP-S~KLALsVg 146 (362)
T KOG0294|consen 80 LSHAG---------SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK---SLKAHKGQVTDLSIHP-SGKLALSVG 146 (362)
T ss_pred ecccc---------ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee---eecccccccceeEecC-CCceEEEEc
Confidence 65533 399999998865 89999999999999998875443 2334444799999999 999999999
Q ss_pred CCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCcee
Q 016032 182 NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFR 261 (396)
Q Consensus 182 ~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (396)
.|+.+++||+-+++....+. +.+ ..+.+.|+|.|.+++.+..+ .|-+|.+.+..+....... ..+++
T Consensus 147 ~D~~lr~WNLV~Gr~a~v~~-L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~---------~r~l~ 213 (362)
T KOG0294|consen 147 GDQVLRTWNLVRGRVAFVLN-LKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP---------KRILC 213 (362)
T ss_pred CCceeeeehhhcCccceeec-cCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc---------cccee
Confidence 99999999998766544443 233 34559999999999888866 6999999876654322111 11223
Q ss_pred EEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceee-eccCCcEEEeec-CCcEEEEc
Q 016032 262 AEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNK-LHPRDDVLASGS-SRSIFIWR 339 (396)
Q Consensus 262 ~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~sg~-d~~i~iw~ 339 (396)
+.|.. +.+++ +|..++.|.+||..+..+...+..|. ..|-.+.. -.|++.+|++++ ||.|+|||
T Consensus 214 ~~~l~----------~~~L~---vG~d~~~i~~~D~ds~~~~~~~~AH~-~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 214 ATFLD----------GSELL---VGGDNEWISLKDTDSDTPLTEFLAHE-NRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eeecC----------CceEE---EecCCceEEEeccCCCccceeeecch-hheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 44433 44555 68999999999999988888888887 67776632 367889999988 99999999
Q ss_pred CCCc-----ceeeecccc
Q 016032 340 PKEK-----SELVEQKEE 352 (396)
Q Consensus 340 ~~~~-----~~~~~~~~~ 352 (396)
++.. +++......
T Consensus 280 ~~~~~k~~~~~l~e~n~~ 297 (362)
T KOG0294|consen 280 IDMETKKRPTLLAELNTN 297 (362)
T ss_pred ccccccCCcceeEEeecC
Confidence 9876 455555553
No 79
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.1e-28 Score=213.32 Aligned_cols=264 Identities=17% Similarity=0.116 Sum_probs=180.0
Q ss_pred cceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecC------CCCCCCCCcceeeeEEEeCC-CCCEEEEEecC
Q 016032 65 CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN------PNGWHGPRTWRMLYGMDINP-EKGVVLVADNF 137 (396)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~ 137 (396)
..|.....+++ +..+++++.+.....|+...+..+...... ...+.+| ...|.+++|+| ++++|++++.|
T Consensus 21 ~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH--~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 21 LNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQ--EGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred eccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCC--CCCEEEEEEcCCCCCEEEEEeCC
Confidence 34555555666 566778887877788876654322111100 0011222 24599999999 78999999999
Q ss_pred CeEEEEeCCCCCCC----ccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEE
Q 016032 138 GFLYLVDARTNSRS----GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAY 213 (396)
Q Consensus 138 g~i~i~d~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~ 213 (396)
+.|++||+...... ........|...|.+++|+|..+++|++++.|+.|+|||+++.+....+ ..|...|.+++
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l--~~h~~~V~sla 175 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI--KCHSDQITSLE 175 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE--cCCCCceEEEE
Confidence 99999999765321 1122345566789999999944579999999999999999875443222 25888999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceE
Q 016032 214 FSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPID 293 (396)
Q Consensus 214 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~ 293 (396)
|+|++.+|++++.|+.|++||+++++..... ..+ .......+.|.++. +.++...++++.|+.|+
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl----~~H---~~~~~~~~~w~~~~--------~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV----EAH---ASAKSQRCLWAKRK--------DLIITLGCSKSQQRQIM 240 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEE----ecC---CCCcceEEEEcCCC--------CeEEEEecCCCCCCeEE
Confidence 9999999999999999999999987653211 011 11112356787763 33333333556789999
Q ss_pred EEEcCccchhhh-hcCCCCCCCcceeeeccCCcEEEeec--CCcEEEEcCCCcceeeec
Q 016032 294 FIDITTGQLVAE-VMDPNITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQ 349 (396)
Q Consensus 294 vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~sg~--d~~i~iw~~~~~~~~~~~ 349 (396)
+||+.+...... ...+....+... .|++++.+|++|+ |+.|++|++.+++.+...
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~-~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIP-FFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEE-EEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 999986543322 222222223222 6899999988865 899999999998876654
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7.5e-29 Score=196.62 Aligned_cols=259 Identities=18% Similarity=0.243 Sum_probs=194.8
Q ss_pred CccceeeeccccCCeEEEEecCCCC--cEEEEEeCCCcEEEeecccceeeeEe---cCCcccceeEEEEecCCCcEEEEE
Q 016032 9 DQVNCAVIRYHSRRVTCLEFHPTNN--HILLSGDKKGQVGVWDFYKVSEKIVY---GNIHSCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 9 ~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~s~ 83 (396)
.+.+..++.||.++|.+++|.-.++ ..|++++.|.++++|.++.+...... ..||...|.++...++ +..+++|
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s-gtr~~Sg 211 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS-GTRFCSG 211 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC-CCeEEee
Confidence 3567889999999999988854332 35999999999999999876543322 1489999999999999 9999999
Q ss_pred eCCCeEEEEECCCCcc--cceee----------------cCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeC
Q 016032 84 SSDGTVSCTDLETGLA--LSLMN----------------VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 145 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~--~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~ 145 (396)
+.|..|.+|+..+... ..... .+--...+|. ..|.++.|++ ...+++++.|.+|+.||+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt--~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT--EPVSSVVWSD-ATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc--cceeeEEEcC-CCceEeecccceEEEEEe
Confidence 9999999999332110 00000 0000112233 3489999998 778999999999999999
Q ss_pred CCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcC-CCCEEEE
Q 016032 146 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILT 223 (396)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~ 223 (396)
.++...... .....++++..+| ...+|++|+.|..|++||.|++........+ +|.+.|.++.|+| +..+|++
T Consensus 289 etg~~~~~~----~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 289 ETGGLKSTL----TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred ecccceeee----ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 998766443 2233699999999 9999999999999999999987654444444 8999999999999 6667899
Q ss_pred EeCCCcEEEEEcccccccCCCcceeeccccccc-CCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 224 TSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 224 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
++.|+++++||+++-+. |+. ...++ -..+++.|+. +.+++ +|+.|++|+|+..
T Consensus 364 ~S~D~t~klWDvRS~k~--ply------dI~~h~DKvl~vdW~~----------~~~Iv---SGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKA--PLY------DIAGHNDKVLSVDWNE----------GGLIV---SGGADNKLRIFKG 417 (423)
T ss_pred EecCCeEEEEEeccCCC--cce------eeccCCceEEEEeccC----------CceEE---eccCcceEEEecc
Confidence 99999999999997652 111 11112 2235777776 55666 8999999999864
No 81
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1e-27 Score=211.66 Aligned_cols=259 Identities=16% Similarity=0.174 Sum_probs=177.6
Q ss_pred EeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc-cceeecCCCCCCCCCcce
Q 016032 39 GDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWR 117 (396)
Q Consensus 39 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 117 (396)
|+.++.|++|+.........+ .+|...|.+++|+|+.+.+|++|+.|++|++||+.++.. ...+......+.++. .
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK--K 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC--C
Confidence 566889999998776555555 789999999999997578999999999999999986432 111000000011122 3
Q ss_pred eeeEEEeCCCCCEE-EEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC
Q 016032 118 MLYGMDINPEKGVV-LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 196 (396)
Q Consensus 118 ~v~~~~~~~~~~~l-~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 196 (396)
.|.+++|+|++..+ ++++.|+.|++||++++...... .+...|.+++|+| ++.+|++++.|+.|+|||+++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i----~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI----NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE----ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcE
Confidence 49999999998765 68899999999999987643221 2345799999999 999999999999999999987654
Q ss_pred CCccccCCCCCceeE-----EEEcCCCCEEEEEeCCC----cEEEEEcccccccCCCcceeecccccccCCceeEEeCCC
Q 016032 197 GSSLCDLPHKRVVNS-----AYFSPSGSKILTTSQDN----RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPK 267 (396)
Q Consensus 197 ~~~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (396)
...+ .+|.+.+.. ..|++++.+|++++.|+ .|+|||++.... +. ...........+...|+++
T Consensus 202 i~tl--~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~--pl----~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 202 ASSF--HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS--AL----VTMSIDNASAPLIPHYDES 273 (568)
T ss_pred EEEE--ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC--ce----EEEEecCCccceEEeeeCC
Confidence 3332 256655433 34568889999888774 799999985321 11 1122222333334455544
Q ss_pred CCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCc
Q 016032 268 DPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 325 (396)
Q Consensus 268 ~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (396)
. |.+++ +|..|+.|++|++..+.....-...+..+..++ +|.|...
T Consensus 274 t--------g~l~l---sGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~-~f~Pkr~ 319 (568)
T PTZ00420 274 T--------GLIYL---IGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSF-GFLPKQI 319 (568)
T ss_pred C--------CCEEE---EEECCCeEEEEEccCCcEEeecccccCCCccce-EEccccc
Confidence 3 56665 689999999999987643221122233556666 7888743
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-29 Score=190.51 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=185.5
Q ss_pred CCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEE
Q 016032 4 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 83 (396)
.|+.-++.+++.|. |..-|.+++|+.|. .+|+||+.+..+||||++.......-..+|.+.|..+.|... .+.|+++
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e-D~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE-DKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc-CceEEee
Confidence 36666777777776 89999999999998 679999999999999999877655555889999999999988 8899999
Q ss_pred eCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 84 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
+.|++||+||.+++..+..+..+.. |.++.++++|.+|.++. .+.|.+||..+...+ ........
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~----------VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~l----Ks~k~P~n 226 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSP----------VTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLL----KSYKMPCN 226 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCC----------CcceeeccCCCEEEEec-CceeEEeccccccce----eeccCccc
Confidence 9999999999999999999877654 89999999999776654 478999999986554 33344557
Q ss_pred EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
|.+..++| +..++++|+.|..++.||..+++..... ..+|.++|.|+.|+|+|...++|+.||+|++|.+..++.
T Consensus 227 V~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 227 VESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cccccccC-CCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999 8899999999999999999987665443 347999999999999999999999999999999876654
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2e-28 Score=215.44 Aligned_cols=266 Identities=18% Similarity=0.235 Sum_probs=208.3
Q ss_pred CCCCCCccceee-eccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEE
Q 016032 4 AHVIPDQVNCAV-IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 82 (396)
Q Consensus 4 ~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 82 (396)
.|...+...+.. +.||.+.|++++|..-+ .+|++|+.|.+++|||..++.+...+ .+|...|.++...+ ..+++
T Consensus 232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~~---~~~~s 306 (537)
T KOG0274|consen 232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTIDP---FLLVS 306 (537)
T ss_pred EeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEccC---ceEee
Confidence 466667777777 99999999999998744 68999999999999999999999998 69999999999874 48888
Q ss_pred EeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCc
Q 016032 83 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 162 (396)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 162 (396)
|+.|.+|++|+++++..+..+..+.. .|.++..+ +.++++|+.|+.|.+||+.+++.... ...|..
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~~h~~---------~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s---l~gH~~ 372 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLRGHTG---------PVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS---LSGHTG 372 (537)
T ss_pred ccCCceEEEEeccCcceEEEeccccc---------cEEEEEec--CCEEEEEecCceEEEEEhhhceeeee---ecCCcc
Confidence 99999999999999999988865333 39999887 88999999999999999998776653 344666
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccccc
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 241 (396)
.|.++.+.+ . ..+++|+.|++|++||+++.. .++..+ +|...+..+.+ .+++|++++.|+.|++||..++++.
T Consensus 373 ~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 373 RVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred eEEEEEecC-c-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCcee
Confidence 899998865 3 899999999999999998762 334444 57777766655 7889999999999999999999886
Q ss_pred CCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCc
Q 016032 242 SPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 315 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~ 315 (396)
...... .......+.+. ...++ .++.++.+++||+.++++...+.........
T Consensus 447 ~~~~~~-------~~~~v~~l~~~-----------~~~il---~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~ 499 (537)
T KOG0274|consen 447 RTLEGR-------HVGGVSALALG-----------KEEIL---CSSDDGSVKLWDLRSGTLIRTLLSTDLGATW 499 (537)
T ss_pred eeeccC-------CcccEEEeecC-----------cceEE---EEecCCeeEEEecccCchhhhhhhccccccc
Confidence 543321 00100111111 12233 5789999999999999999887544433333
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=3.2e-28 Score=196.33 Aligned_cols=259 Identities=17% Similarity=0.279 Sum_probs=203.7
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
++.|....+..|+||+-.|+.+.|+|+. ..+++++.|..|+||........... ..|..+|+.+..+|. +.+|++++
T Consensus 246 ~d~~s~q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t-geYllsAs 322 (506)
T KOG0289|consen 246 FDKPSNQILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT-GEYLLSAS 322 (506)
T ss_pred EecchhhhhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC-CcEEEEec
Confidence 4567777889999999999999999998 57999999999999999887766665 679999999999999 99999999
Q ss_pred CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 85 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
.|++..+.|++++..+......... ..+++.+|+|||..|.+|..||.+++||+....... .+..|.++|
T Consensus 323 ~d~~w~Fsd~~~g~~lt~vs~~~s~-------v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a---~Fpght~~v 392 (506)
T KOG0289|consen 323 NDGTWAFSDISSGSQLTVVSDETSD-------VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA---KFPGHTGPV 392 (506)
T ss_pred CCceEEEEEccCCcEEEEEeecccc-------ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc---cCCCCCCce
Confidence 9999999999999887766543221 338999999999999999999999999999877544 456688899
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCC
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPS 244 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 244 (396)
..++|+. +|.+|+++++|+.|++||+|..+..+.+.. .....+.++.|.+.|.+|+.++.|=.|++++-.+..-.
T Consensus 393 k~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~--- 467 (506)
T KOG0289|consen 393 KAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT--- 467 (506)
T ss_pred eEEEecc-CceEEEEEecCCeEEEEEehhhcccceeec-cccccceeEEEcCCCCeEEeecceeEEEEEecccccce---
Confidence 9999999 999999999999999999998766555443 33447999999999999999987766666653332211
Q ss_pred cceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 245 REIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 245 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
+. ..+..+. ....+.|... .++++ +++.|..++++.+
T Consensus 468 -~~---~~~~~~sg~st~v~Fg~~---------aq~l~---s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 468 -EI---KELADHSGLSTGVRFGEH---------AQYLA---STSMDAILRLYAL 505 (506)
T ss_pred -ee---ehhhhcccccceeeeccc---------ceEEe---eccchhheEEeec
Confidence 00 1111111 1112333333 56777 8888888888754
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.5e-29 Score=202.81 Aligned_cols=261 Identities=18% Similarity=0.231 Sum_probs=195.0
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 142 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i 142 (396)
....|.+++|+|....-+++.+ .-.+.+|+..+......+.--.. .+.++.|..||.++++|+..|.|++
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~---------~v~s~~fR~DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKD---------VVYSVDFRSDGRLLAAGDESGHVKV 94 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhcc---------ceeEEEeecCCeEEEccCCcCcEEE
Confidence 3468999999997555555555 45799999988777664432222 2899999999999999999999999
Q ss_pred EeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEE
Q 016032 143 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKI 221 (396)
Q Consensus 143 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 221 (396)
||+.+.. +.. ....|..++..+.|+|.++.+|++|++|+.+++||+.+... .....+|...|.+.+|+| ++.++
T Consensus 95 fD~k~r~-iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 95 FDMKSRV-ILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred eccccHH-HHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEE
Confidence 9965522 222 34556668999999998888999999999999999976442 223348999999999999 56689
Q ss_pred EEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccc
Q 016032 222 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 301 (396)
Q Consensus 222 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~ 301 (396)
++|+.||.|++||++.... ... .++.....-.+.+-|. |..++ ....+.++|||+.+|.
T Consensus 170 vtGsYDg~vrl~DtR~~~~--~v~------elnhg~pVe~vl~lps---------gs~ia----sAgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLTS--RVV------ELNHGCPVESVLALPS---------GSLIA----SAGGNSVKVWDLTTGG 228 (487)
T ss_pred EecCCCceEEEEEeccCCc--eeE------EecCCCceeeEEEcCC---------CCEEE----EcCCCeEEEEEecCCc
Confidence 9999999999999986531 111 1111111114455554 55555 2334679999999655
Q ss_pred h-hhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEeecC
Q 016032 302 L-VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKA 361 (396)
Q Consensus 302 ~-~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 361 (396)
. +..+..|+ ..++|+ .+..++..|++|+ |+.+++|++.+-+.+..+..+.+++.|+-.
T Consensus 229 qll~~~~~H~-KtVTcL-~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs 288 (487)
T KOG0310|consen 229 QLLTSMFNHN-KTVTCL-RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVS 288 (487)
T ss_pred eehhhhhccc-ceEEEE-EeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEec
Confidence 4 44444454 889999 8999999999999 999999999999999999988887666444
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.4e-28 Score=185.51 Aligned_cols=281 Identities=12% Similarity=0.133 Sum_probs=206.8
Q ss_pred ccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc-eeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECC
Q 016032 17 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 95 (396)
Q Consensus 17 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 95 (396)
....+.|.+|+|||....+++.||-||+||+|+++.. .........|.++|.+++|+.+ +..+++|+.|+.+++||+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd-gskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD-GSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC-CceEEeeccCCceEEEEcc
Confidence 3457889999999965567889999999999999873 4444444679999999999999 8999999999999999999
Q ss_pred CCcccceeecCCCCCCCCCcceeeeEEEeCCCCC--EEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCC
Q 016032 96 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG--VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 173 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 173 (396)
+++.. .+..+.. +|.++.|-+... .|++|+.|.+|+.||++.......+ .....+.++..-
T Consensus 103 S~Q~~-~v~~Hd~---------pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~----~LPeRvYa~Dv~--- 165 (347)
T KOG0647|consen 103 SGQVS-QVAAHDA---------PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL----QLPERVYAADVL--- 165 (347)
T ss_pred CCCee-eeeeccc---------ceeEEEEecCCCcceeEecccccceeecccCCCCeeeee----eccceeeehhcc---
Confidence 99654 3434333 388888877655 8999999999999999986655432 223357776653
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccc-
Q 016032 174 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD- 252 (396)
Q Consensus 174 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~- 252 (396)
..+++++..+..|.+|++++.........-...-.+.|++..++....+.|+-+|.+.|..+..+...... . ...+.
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF-t-FkCHR~ 243 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF-T-FKCHRS 243 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce-e-EEEecc
Confidence 46788888899999999976443222212234567899999998888899999999999999876431111 0 11111
Q ss_pred ---ccc-cCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEE
Q 016032 253 ---FNR-HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 328 (396)
Q Consensus 253 ---~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 328 (396)
... ....-.++|+|.. |.+. +.+.||++.+||-.....+.+...+. .+|.+. +|+.+|.++|
T Consensus 244 ~~~~~~~VYaVNsi~FhP~h--------gtlv----TaGsDGtf~FWDkdar~kLk~s~~~~-qpItcc-~fn~~G~ifa 309 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPVH--------GTLV----TAGSDGTFSFWDKDARTKLKTSETHP-QPITCC-SFNRNGSIFA 309 (347)
T ss_pred CCCCCCceEEecceEeeccc--------ceEE----EecCCceEEEecchhhhhhhccCcCC-Ccccee-EecCCCCEEE
Confidence 111 1111257788853 3333 46789999999998877777766665 788888 8999999998
Q ss_pred eec
Q 016032 329 SGS 331 (396)
Q Consensus 329 sg~ 331 (396)
.+.
T Consensus 310 YA~ 312 (347)
T KOG0647|consen 310 YAL 312 (347)
T ss_pred EEe
Confidence 854
No 87
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-29 Score=217.26 Aligned_cols=215 Identities=20% Similarity=0.302 Sum_probs=179.5
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeE
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 89 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 89 (396)
.+++..|.||.+.|..|.|+.++ +|++++.|.+|+||++....++..+. |..-|+|++|+|.+.++|++|+-||.|
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred ccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccce
Confidence 34578899999999999999875 79999999999999999999999986 999999999999989999999999999
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeee-----cCCccE
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIH-----RKGSKV 164 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~-----~~~~~i 164 (396)
|||++...+.+.-..+. ..|++++|.|+|+..++|+.+|.+++|+....+......... .....|
T Consensus 435 RiWsI~d~~Vv~W~Dl~----------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rI 504 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLR----------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRI 504 (712)
T ss_pred EEeecCcCeeEeehhhh----------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCcee
Confidence 99999987776554443 229999999999999999999999999998765443221111 112279
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 238 (396)
+++.|.|.+...+++.+.|..|+|||.++.+....++.+.....-....|+.+|++|++++.|..|++|++...
T Consensus 505 TG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 505 TGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 99999997777788888999999999977666555555444445567789999999999999999999998543
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.7e-27 Score=184.17 Aligned_cols=277 Identities=17% Similarity=0.219 Sum_probs=208.8
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
..+.|.++.|+|.++ .|+.++.||++++||+........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC--CceEEEeccCceEEEEEecCCc
Confidence 367899999999885 56677799999999999887666664 999999999997 4789999999999999999887
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 178 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 178 (396)
....-. +. ..+.|+.+++....+++|+.|+.|++||.+....... ......|.++... ++.|+
T Consensus 87 ~~~igt-h~---------~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~----~d~~kkVy~~~v~---g~~Lv 149 (323)
T KOG1036|consen 87 EDQIGT-HD---------EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT----FDQGKKVYCMDVS---GNRLV 149 (323)
T ss_pred ceeecc-CC---------CceEEEEeeccCCeEEEcccCccEEEEeccccccccc----cccCceEEEEecc---CCEEE
Confidence 654322 21 3399999999999999999999999999997333322 2223368888774 58899
Q ss_pred EeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccC-
Q 016032 179 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL- 257 (396)
Q Consensus 179 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~- 257 (396)
+|+.+..|.+||+|+.........-.-.-.+.++++-|++.=.++++-||.|.+=.++..+......-....|......
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~ 229 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT 229 (323)
T ss_pred EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc
Confidence 9999999999999987664433333456689999999988889999999999886666553222111111111111110
Q ss_pred ----CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec
Q 016032 258 ----TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 331 (396)
Q Consensus 258 ----~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~ 331 (396)
..-.++|+|. -..++ +|+.||.|.+||+.+.+.+..+.... ..|..+ +|+.+|..||.|+
T Consensus 230 ~~~yPVNai~Fhp~---------~~tfa---TgGsDG~V~~Wd~~~rKrl~q~~~~~-~SI~sl-sfs~dG~~LAia~ 293 (323)
T KOG1036|consen 230 EIIYPVNAIAFHPI---------HGTFA---TGGSDGIVNIWDLFNRKRLKQLAKYE-TSISSL-SFSMDGSLLAIAS 293 (323)
T ss_pred eEEEEeceeEeccc---------cceEE---ecCCCceEEEccCcchhhhhhccCCC-CceEEE-EeccCCCeEEEEe
Confidence 0124677776 33344 79999999999999999998887663 667777 8999999999986
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.8e-29 Score=195.53 Aligned_cols=271 Identities=15% Similarity=0.167 Sum_probs=210.9
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
.+...-+.|..|+|+ +++|++|+.||.|-+|+..+|+....++..... .-......|.|+.|+.|...+++|+.||.|
T Consensus 210 Fg~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 210 FGQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-NFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred cccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhc-ceeecccceEEEeecccHHHhhccCcCCcE
Confidence 345677889999999 999999999999999999999877665543221 111222459999999999999999999999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCC
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGS 219 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 219 (396)
++|.++++.++...-..|.. .|+++.|+. ++..+++++.|.++++.-+.+++. +..+ +|...|+...|+++|.
T Consensus 288 KvWri~tG~ClRrFdrAHtk--Gvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~---LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTK--GVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC---LKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred EEEEEecchHHHHhhhhhcc--CeeEEEEcc-CcchhhcccccceEEEeccccchh---HHHhcCccccccceEEcCCCC
Confidence 99999999988766555555 699999999 999999999999999999976554 4444 7999999999999999
Q ss_pred EEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc
Q 016032 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 299 (396)
Q Consensus 220 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~ 299 (396)
.+++++.||+|++|+..+.+++.+.+..... .....+..-|..+ ..++. +...++|+|-++ .
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d------~~vnsv~~~PKnp-------eh~iV----CNrsntv~imn~-q 423 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTD------YPVNSVILLPKNP-------EHFIV----CNRSNTVYIMNM-Q 423 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCc------ccceeEEEcCCCC-------ceEEE----EcCCCeEEEEec-c
Confidence 9999999999999999999987655433211 1122444455543 23333 355567888887 5
Q ss_pred cchhhhhcCCC--CCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEe
Q 016032 300 GQLVAEVMDPN--ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 358 (396)
Q Consensus 300 ~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~ 358 (396)
|+.++.+.... .+...+. +.+|.|.++.+.+ |+.++.+.+.+|.+...+..|...+..
T Consensus 424 GQvVrsfsSGkREgGdFi~~-~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG 484 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINA-ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG 484 (508)
T ss_pred ceEEeeeccCCccCCceEEE-EecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc
Confidence 77777776432 1223333 5899999999988 999999999999999988887765443
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-29 Score=187.83 Aligned_cols=212 Identities=19% Similarity=0.291 Sum_probs=180.5
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeE
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 89 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 89 (396)
..+++.++.|...|.++.|++..++.+++++-|++|++|+......+.++ .+|...|+...|+|...+.+++++.|+++
T Consensus 94 s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l 172 (311)
T KOG0277|consen 94 SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTL 172 (311)
T ss_pred CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceE
Confidence 35688999999999999999987788899999999999999988888887 78999999999999989999999999999
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
++||++.......+..+.. .+.++.|+.- .+.+++|+.|+.|+.||++..+... .....|+..|+.++
T Consensus 173 ~lwdvr~~gk~~~i~ah~~---------Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl--~eL~gh~~AVRkvk 241 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSIEAHNS---------EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL--FELNGHGLAVRKVK 241 (311)
T ss_pred EEEEecCCCceeEEEeccc---------eeEeecccccCCcEEEecCCCceEEEEehhhccccc--eeecCCceEEEEEe
Confidence 9999987654444655442 2999999874 6778899999999999999877543 34567777999999
Q ss_pred eccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 016032 169 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~ 235 (396)
|+|....+|++++.|-+++|||...... .+... .|..-+..+.||+ ++.++|+++.|+.+.||+.
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds--~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDS--AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchh--hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9998889999999999999999864333 22222 5888899999999 7889999999999999984
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=180.25 Aligned_cols=253 Identities=15% Similarity=0.241 Sum_probs=198.9
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
..++|.+.|-.++|+|..+.+|++++.|.+|++||+..+++...+. ....=..+.|+|+ +++++.++.|..|.+.|.
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~-g~~~~~~~kdD~it~id~ 135 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPD-GEYIAVGNKDDRITFIDA 135 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCC-CCEEEEecCcccEEEEEe
Confidence 5678999999999999988899999999999999999998888875 4445567889999 999999999999999999
Q ss_pred CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCC
Q 016032 95 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 174 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 174 (396)
++.+.....+.... +..++|+-++.+++.....|.|.|......+... ....|.....||.|+| +|
T Consensus 136 r~~~~~~~~~~~~e----------~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~---si~AH~snCicI~f~p-~G 201 (313)
T KOG1407|consen 136 RTYKIVNEEQFKFE----------VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ---SIKAHPSNCICIEFDP-DG 201 (313)
T ss_pred cccceeehhcccce----------eeeeeecCCCCEEEEecCCceEEEEecccccccc---ccccCCcceEEEEECC-CC
Confidence 99887766544322 7888999888888888888999999887655443 3456667899999999 99
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccccc
Q 016032 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN 254 (396)
Q Consensus 175 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 254 (396)
++||+|+.|..+.+||+...-+.+.+. .+.-+|..+.||.+|++||+|+.|..|-|=++.+|..+- ...
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~---------eI~ 270 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW---------EIP 270 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeec--cccCceEEEEeccCcceeeccCccceEEeEecccCCeEE---------Eee
Confidence 999999999999999997655555554 367889999999999999999999999999999887532 222
Q ss_pred ccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 255 RHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
.....+.++|+|..+...++.+...-- +....|.+++|-+.
T Consensus 271 ~~~~t~tVAWHPk~~LLAyA~ddk~~d---~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 271 CEGPTFTVAWHPKRPLLAYACDDKDGD---SNREAGTVKIFGLS 311 (313)
T ss_pred ccCCceeEEecCCCceeeEEecCCCCc---cccccceeEEecCC
Confidence 233346899999855444443221110 12233667776543
No 92
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=194.08 Aligned_cols=285 Identities=13% Similarity=0.157 Sum_probs=214.6
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee-E---------------ec-CCcccceeEEEEecC
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI-V---------------YG-NIHSCIVNNIRFNPT 75 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~---------------~~-~~~~~~v~~~~~~~~ 75 (396)
...+..|.-+|.|++++|++ .+.++++.+|+|.=|++.++.... . .. .+|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 67788899999999999998 689999999999999998765321 0 11 268889999999999
Q ss_pred CCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccce
Q 016032 76 NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI 155 (396)
Q Consensus 76 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~ 155 (396)
+.+|++|+.|..|.||+.++.+.+..+..+... |.+++|-.....+++++.|..|++|++.....+.
T Consensus 214 -gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~---------V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve--- 280 (479)
T KOG0299|consen 214 -GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA---------VSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE--- 280 (479)
T ss_pred -CcEEEecCCCceEEEecCcccchhhcccccccc---------eeeeeeecCccceeeeecCCceEEEehhHhHHHH---
Confidence 999999999999999999999999887665544 9999999998999999999999999999876554
Q ss_pred eeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 156 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 156 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
..+.|...|.+|.... .+..+-+|+.|+++++|++.. ..+.+ ..++.+.+-|++|- +...+++|+.+|.|.+|++
T Consensus 281 tlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e--esqli-frg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE--ESQLI-FRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHhCCccceeeechhc-ccceEEeccccceeEEEeccc--cceee-eeCCCCCeeeEEEe-cccceeeccCCceEEEeee
Confidence 3466777899999887 777777888999999999943 22233 23678899999997 4567999999999999999
Q ss_pred ccccccCCCcceeeccc----ccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccc----hhhhhc
Q 016032 236 IFGNLDSPSREIVHSHD----FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ----LVAEVM 307 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~----~~~~~~ 307 (396)
...+.+-.......... .++..-...++-.|. ..+++ +|+.+|.|++|-+..+- ++..+.
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~---------sdL~a---sGS~~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG---------SDLLA---SGSWSGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEeccc---------CceEE---ecCCCCceEEEEecCCccccceeeecc
Confidence 87765432211100000 000000112222222 45555 89999999999998872 333332
Q ss_pred CCCCCCCcceeeeccCCcEEEeec
Q 016032 308 DPNITTISPVNKLHPRDDVLASGS 331 (396)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~l~sg~ 331 (396)
-.+.|+.+ +|+++|..|++|-
T Consensus 424 --~~GfVNsl-~f~~sgk~ivagi 444 (479)
T KOG0299|consen 424 --LVGFVNSL-AFSNSGKRIVAGI 444 (479)
T ss_pred --cccEEEEE-EEccCCCEEEEec
Confidence 23566777 8999999777754
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-27 Score=201.85 Aligned_cols=256 Identities=18% Similarity=0.293 Sum_probs=205.0
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
|.............+.+.|+++.|+++| .+|++|..+|.|.|||.........+...|...|-+++|. ...+.+|+
T Consensus 202 W~~~s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGs 277 (484)
T KOG0305|consen 202 WSASSGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGS 277 (484)
T ss_pred EecCCCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEec
Confidence 4455555444455568999999999999 6899999999999999999888888744499999999998 56899999
Q ss_pred CCCeEEEEECCCCcccce-eecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 85 SDGTVSCTDLETGLALSL-MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
.++.|..+|++..+.... +..+.. .|..+.|++++.++++|+.|+.+.|||....... .....|.+.
T Consensus 278 r~~~I~~~dvR~~~~~~~~~~~H~q---------eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~---~~~~~H~aA 345 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVSTLQGHRQ---------EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK---FTFTEHTAA 345 (484)
T ss_pred CCCcEEEEEEecchhhhhhhhcccc---------eeeeeEECCCCCeeccCCCccceEeccCCCcccc---EEEecccee
Confidence 999999999998876655 333322 3999999999999999999999999999554433 356677779
Q ss_pred EEEEEeccCCCCEEEEee--CCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEE--eCCCcEEEEEccccc
Q 016032 164 VVGLHCNPIQPELLLSCG--NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT--SQDNRLRIWDSIFGN 239 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~ 239 (396)
|.+++|+|....+||+|+ .|+.|++||..++.. +........|.+|.|++..+-|+++ ..++.|.||+..+.+
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~---i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~ 422 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR---IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK 422 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE---ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc
Confidence 999999999999999976 599999999986544 4444567889999999988776654 347789999997744
Q ss_pred ccCCCcceeecccccccCC-ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCcc
Q 016032 240 LDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 300 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~ 300 (396)
.. ..+.+|.. .+.++++|+ |..++ +|+.|.++++|++-..
T Consensus 423 ~~---------~~l~gH~~RVl~la~SPd---------g~~i~---t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 423 LV---------AELLGHTSRVLYLALSPD---------GETIV---TGAADETLRFWNLFDE 463 (484)
T ss_pred ee---------eeecCCcceeEEEEECCC---------CCEEE---EecccCcEEeccccCC
Confidence 32 22333332 357899999 88888 8999999999998764
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=197.19 Aligned_cols=271 Identities=14% Similarity=0.156 Sum_probs=197.1
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccc-eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCe
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 139 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 139 (396)
++|+..|.++++.|. +..|++|+.|.+|++||+....... .++. -.+.....|.+++|++.+..|++.+....
T Consensus 164 ~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~-----l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQ-----LQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhc-----cCcccccccceeeecCCCCeEEEEecCcc
Confidence 678899999999999 9999999999999999998643221 1111 01111234999999999999999999999
Q ss_pred EEEEeCCCCCC---------CccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCC-CccccC---CCC
Q 016032 140 LYLVDARTNSR---------SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG-SSLCDL---PHK 206 (396)
Q Consensus 140 i~i~d~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~---~~~ 206 (396)
.+++|-..... +..+.....|-..+++.+|+|.+.+.|++++.||++++||+...+.. +.+... +..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999654322 22222344566689999999988889999999999999999764432 222221 344
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeeccc
Q 016032 207 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG 286 (396)
Q Consensus 207 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 286 (396)
-+++.++|+|+|+++|+|+.||.|.+|+..... ..+...+.. .........++.|+++ |++|+ +-
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~--AH~~g~~Itsi~FS~d---------g~~Ll---SR 382 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKD--AHLPGQDITSISFSYD---------GNYLL---SR 382 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcc-cccceEeee--ccCCCCceeEEEeccc---------cchhh---hc
Confidence 578999999999999999999999999985432 222222111 2222233457889988 99998 88
Q ss_pred ccccceEEEEcCccc-hhhhhcCC-CCCCCcceeeeccCCcEEEeec-------CCcEEEEcCCCcceeeeccccc
Q 016032 287 AALHPIDFIDITTGQ-LVAEVMDP-NITTISPVNKLHPRDDVLASGS-------SRSIFIWRPKEKSELVEQKEEM 353 (396)
Q Consensus 287 ~~d~~i~vwd~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~l~sg~-------d~~i~iw~~~~~~~~~~~~~~~ 353 (396)
+.|+++++||+.+.+ ++....+- ..-.-+.+ +|||+.++|++|. .|.+.+||..+-+.++++....
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc-~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~ 457 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC-CFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST 457 (641)
T ss_pred cCCCceeeeeccccccchhhhcCCCccCCCCcc-ccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC
Confidence 999999999998654 44443322 11223344 7999999999974 2789999999998888876543
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=197.79 Aligned_cols=253 Identities=16% Similarity=0.220 Sum_probs=199.5
Q ss_pred CCCCCcc--ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEE
Q 016032 5 HVIPDQV--NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 82 (396)
Q Consensus 5 ~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 82 (396)
|.+...+ .+.+|.|-.++|+++.|.+++ +.+++.+.|+.+++|++...+...++ .+|...|+++.|... ...+++
T Consensus 202 W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~-~~~vVs 278 (459)
T KOG0288|consen 202 WNVLGEKSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLS-HSRVVS 278 (459)
T ss_pred hhcccchhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhcc-ccceee
Confidence 4443333 667888999999999999998 67888889999999999998888877 789999999999987 556999
Q ss_pred EeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCc
Q 016032 83 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 162 (396)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 162 (396)
|+.|.+|++||+....+...+..... +..+..+ ...+++|..|+.|++||+++...... ...++
T Consensus 279 gs~DRtiK~WDl~k~~C~kt~l~~S~----------cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s----v~~gg 342 (459)
T KOG0288|consen 279 GSADRTIKLWDLQKAYCSKTVLPGSQ----------CNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS----VPLGG 342 (459)
T ss_pred ccccchhhhhhhhhhheecccccccc----------ccceEec--ceeeeecccccceEEEeccCCceeeE----eecCc
Confidence 99999999999999887766543322 4444444 56688999999999999998765532 23344
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCC--CCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
.|+++..++ ++..+++++.|.++.+.|+++.+...++...+ .....+.+.|||++.|+++|+.||.|+||++.++++
T Consensus 343 ~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 343 RVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL 421 (459)
T ss_pred ceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceE
Confidence 899999999 99999999999999999999866544443331 233488999999999999999999999999999997
Q ss_pred cCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEE
Q 016032 241 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 295 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vw 295 (396)
........ .....+++.|+|. |.+++ +.+.++.+.+|
T Consensus 422 E~~l~~s~------s~~aI~s~~W~~s---------G~~Ll---sadk~~~v~lW 458 (459)
T KOG0288|consen 422 EKVLSLST------SNAAITSLSWNPS---------GSGLL---SADKQKAVTLW 458 (459)
T ss_pred EEEeccCC------CCcceEEEEEcCC---------Cchhh---cccCCcceEec
Confidence 54322111 1113468999997 77777 67778888888
No 96
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.9e-26 Score=200.44 Aligned_cols=323 Identities=12% Similarity=0.120 Sum_probs=236.1
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCc-ccceeEEEEecCCCcEEEEE
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH-SCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~ 83 (396)
|++.+++.+.+++++...|+++.=+|-- .++|.|..+|+|.|+++...+.+..+. | .++|+.++|.-|+...+++|
T Consensus 187 ~Nvrt~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEeccCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEec
Confidence 7888999999999999999999999987 489999999999999999999999986 5 49999999999977778888
Q ss_pred eCCCeEEEEECCCCcccceeec-CCCCCC-------------------------------------CCCcceeeeEEEeC
Q 016032 84 SSDGTVSCTDLETGLALSLMNV-NPNGWH-------------------------------------GPRTWRMLYGMDIN 125 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~-~~~~~~-------------------------------------~~~~~~~v~~~~~~ 125 (396)
+..|.+.+||++..+.+..... +..... ...+..+..++.|.
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 8889999999998766554431 101000 00111223445554
Q ss_pred -CCCCEEEEEecCCeEEEEeCCCCCC---------------Cc-------------------------------------
Q 016032 126 -PEKGVVLVADNFGFLYLVDARTNSR---------------SG------------------------------------- 152 (396)
Q Consensus 126 -~~~~~l~~~~~~g~i~i~d~~~~~~---------------~~------------------------------------- 152 (396)
.++..+.+++.|++++.+++..... ..
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 4556666666666555554321000 00
Q ss_pred ------------c----ceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcc-ccCCCCCceeEEEEc
Q 016032 153 ------------E----AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL-CDLPHKRVVNSAYFS 215 (396)
Q Consensus 153 ------------~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~i~~~~~~ 215 (396)
. ..........+++++.++ .|++.+.|+..|.|-+|++.++-....+ ....|..+|+.++..
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD 502 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec
Confidence 0 000001224678899999 9999999999999999999875443333 233699999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEE
Q 016032 216 PSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 295 (396)
Q Consensus 216 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vw 295 (396)
.-++.+++++.+|.+++||.....+....+ ..... ..+.++.. ...++ .+..|-.|.++
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-------l~~~~--~~iv~hr~---------s~l~a---~~~ddf~I~vv 561 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLR-------LGSSI--TGIVYHRV---------SDLLA---IALDDFSIRVV 561 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeec-------cCCCc--ceeeeeeh---------hhhhh---hhcCceeEEEE
Confidence 989999999999999999998776432111 11111 11222211 22222 46788899999
Q ss_pred EcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccce
Q 016032 296 DITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 296 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
|..+.+.++.|.+|. ..++.+ +|||||++|++++ |++|++||+.++.++..+..+..
T Consensus 562 D~~t~kvvR~f~gh~-nritd~-~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~ 619 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHG-NRITDM-TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSP 619 (910)
T ss_pred EchhhhhhHHhhccc-cceeee-EeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCc
Confidence 999999999999988 889998 9999999999999 99999999999998877655443
No 97
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.4e-28 Score=186.69 Aligned_cols=268 Identities=16% Similarity=0.255 Sum_probs=199.2
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCC----cccceeecCCCCC-----CCCCcceeeeEEEeCCCCCEE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG----LALSLMNVNPNGW-----HGPRTWRMLYGMDINPEKGVV 131 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l 131 (396)
..|..++.+.+|+|+ +.++++|+.|..|+|.|++.. +............ .-..+...|+++.|+|....|
T Consensus 109 t~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred eecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 569999999999999 999999999999999998732 1111111111000 012233459999999999999
Q ss_pred EEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcc-ccCCCCCcee
Q 016032 132 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL-CDLPHKRVVN 210 (396)
Q Consensus 132 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~i~ 210 (396)
++|+.|+.|++||.......... +......++.++.|+| .|.+|++|.+-.++++||+.+.++...- ..-+|.+.|+
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~-K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAF-KVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHH-HHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 99999999999999765433222 2233344899999999 9999999999999999999876653221 2227999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeeccccccc
Q 016032 211 SAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 290 (396)
Q Consensus 211 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~ 290 (396)
++.+++.+++.++++.||.|++||--+++++...... .+........|..+ |+|+. +.+.|.
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A------H~gsevcSa~Ftkn---------~kyiL---sSG~DS 327 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA------HGGSEVCSAVFTKN---------GKYIL---SSGKDS 327 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh------cCCceeeeEEEccC---------CeEEe---ecCCcc
Confidence 9999999999999999999999999888876543321 11112234566666 99999 899999
Q ss_pred ceEEEEcCccchhhhhcCCCCC---CCcceeeeccCCcEEEeec--CCcEEEEcCCCcceeeec
Q 016032 291 PIDFIDITTGQLVAEVMDPNIT---TISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQ 349 (396)
Q Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~l~sg~--d~~i~iw~~~~~~~~~~~ 349 (396)
.+++|.+.+++++.++.+.... ....-+.|+....|++.-. .+.+.-||..++..+...
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL 391 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence 9999999999999988865211 1111114888888888866 588999999888765543
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.9e-27 Score=204.30 Aligned_cols=280 Identities=14% Similarity=0.231 Sum_probs=215.9
Q ss_pred ccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc-eeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECC
Q 016032 17 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 95 (396)
Q Consensus 17 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 95 (396)
-+|+.+-+.|+|.|+| .+|.+++.||.|++|+.... +.+..+ ..+...|.+++.. ...|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY---SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec---ccceEEeeccceEEEeeCC
Confidence 4699999999999999 58999999999999998876 444444 3388888888875 5699999999999999998
Q ss_pred CCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCC
Q 016032 96 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 175 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 175 (396)
+++.-..+.--. -++.+++++.+|++++.|+.|-.|++.++....... ....|.++|.++.++| +++
T Consensus 85 s~~~~~iL~Rft---------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~---~lrgh~apVl~l~~~p-~~~ 151 (933)
T KOG1274|consen 85 SGEEDTILARFT---------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK---VLRGHDAPVLQLSYDP-KGN 151 (933)
T ss_pred CCCccceeeeee---------ccceEEEEecCCcEEEeecCceeEEEEeccccchhe---eecccCCceeeeeEcC-CCC
Confidence 876543321111 128899999999999999999999999998765443 4556777999999999 999
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCccccC------CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceee
Q 016032 176 LLLSCGNDHFARIWDIRRLEAGSSLCDL------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 249 (396)
Q Consensus 176 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 249 (396)
+||+.+-||.|++||+.++.....+... .....+..++|+|+|..|++.+.|+.|++|+..+++....++.-..
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ 231 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS 231 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc
Confidence 9999999999999999876554433322 1245678899999988888888999999999998886544332222
Q ss_pred cccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEe
Q 016032 250 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 329 (396)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s 329 (396)
... ...+.|+|. |.|++ ++..+|.|-|||..+-+. ......|+++ +|.|+...+-.
T Consensus 232 ss~------~~~~~wsPn---------G~YiA---As~~~g~I~vWnv~t~~~-----~~~~~~Vc~~-aw~p~~n~it~ 287 (933)
T KOG1274|consen 232 SSK------FSDLQWSPN---------GKYIA---ASTLDGQILVWNVDTHER-----HEFKRAVCCE-AWKPNANAITL 287 (933)
T ss_pred ccc------eEEEEEcCC---------CcEEe---eeccCCcEEEEecccchh-----ccccceeEEE-ecCCCCCeeEE
Confidence 111 347899999 99999 899999999999987222 1223556666 89999876655
Q ss_pred ec-CCcEEEE
Q 016032 330 GS-SRSIFIW 338 (396)
Q Consensus 330 g~-d~~i~iw 338 (396)
-. -|...+|
T Consensus 288 ~~~~g~~~~~ 297 (933)
T KOG1274|consen 288 ITALGTLGVS 297 (933)
T ss_pred EeeccccccC
Confidence 33 4544444
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-27 Score=178.53 Aligned_cols=260 Identities=16% Similarity=0.160 Sum_probs=192.2
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce--eeeEecCCcccceeEEEEec-CCCcEEEEEeCCCeEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNP-TNDGTVYAASSDGTVS 90 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~v~ 90 (396)
..-..|.+.|..+...-.| ..|||++.|++|+|+.++++. .....+.+|.+||..++|.. .-+.+|++++.||.|.
T Consensus 5 ~idt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred ehhhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3456799999999988888 579999999999999998755 33344489999999999964 3389999999999999
Q ss_pred EEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC--CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 91 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
||.-+.++-....... .+...+++++|.|. |-.|++++.||.|.+++.+....-........|...+++++
T Consensus 84 iWke~~g~w~k~~e~~-------~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHA-------AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred EEecCCCchhhhhhhh-------hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 9998887543332211 11234999999886 67899999999999999887522222223444555799999
Q ss_pred eccCC--C-----------CEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCC----CEEEEEeCCCcEE
Q 016032 169 CNPIQ--P-----------ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG----SKILTTSQDNRLR 231 (396)
Q Consensus 169 ~~~~~--~-----------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~ 231 (396)
|.|.. + ..|++|+.|..|+||+..+.+-...-...+|.+.|..++|.|.- .+||+++.||++.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi 236 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI 236 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence 99841 2 46999999999999999765322222123799999999999943 4799999999999
Q ss_pred EEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCC
Q 016032 232 IWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNI 311 (396)
Q Consensus 232 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (396)
||..+ .+. + -| ..+++.. ..
T Consensus 237 Iwt~~-~e~---------------------------------------------e-------~w---k~tll~~----f~ 256 (299)
T KOG1332|consen 237 IWTKD-EEY---------------------------------------------E-------PW---KKTLLEE----FP 256 (299)
T ss_pred EEEec-Ccc---------------------------------------------C-------cc---ccccccc----CC
Confidence 99765 111 0 01 1122222 22
Q ss_pred CCCcceeeeccCCcEEEeec-CCcEEEEcCCC
Q 016032 312 TTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 342 (396)
Q Consensus 312 ~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~ 342 (396)
..+..+ +||+.|++|+.++ |..+.+|....
T Consensus 257 ~~~w~v-SWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 257 DVVWRV-SWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cceEEE-EEeccccEEEEecCCcEEEEEEeCC
Confidence 556666 8999999999877 99999997653
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-27 Score=180.23 Aligned_cols=265 Identities=16% Similarity=0.223 Sum_probs=202.2
Q ss_pred CCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEE
Q 016032 4 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 83 (396)
.|-.-++..+.++.||+++|+|+..+.+. +.|+||+.|.++++||+.+++.+..+. ...+|..+.|++. +++++.+
T Consensus 36 vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~-gn~~l~~ 111 (327)
T KOG0643|consen 36 VWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFG-GNLILAS 111 (327)
T ss_pred EEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccC-CcEEEEE
Confidence 46677888999999999999999999988 689999999999999999999999886 7789999999998 7776665
Q ss_pred e-----CCCeEEEEECCC-------CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCC
Q 016032 84 S-----SDGTVSCTDLET-------GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS 151 (396)
Q Consensus 84 ~-----~dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~ 151 (396)
. ..+.|.++|++. .++...+..+. ..++.+-|.|-+.+|++|..+|.|..||++++...
T Consensus 112 tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~---------skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~ 182 (327)
T KOG0643|consen 112 TDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD---------SKITSALWGPLGETIIAGHEDGSISIYDARTGKEL 182 (327)
T ss_pred ehhhcCcceEEEEEEccCChhhhcccCceEEecCCc---------cceeeeeecccCCEEEEecCCCcEEEEEcccCcee
Confidence 4 357899999983 33344443332 33889999999999999999999999999998765
Q ss_pred ccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCc--
Q 016032 152 GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR-- 229 (396)
Q Consensus 152 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-- 229 (396)
......|. ..|+.++++| +..++++++.|.+-++||+++.+. ++.+....+|++.+++|....++.|+....
T Consensus 183 v~s~~~h~--~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v---~Kty~te~PvN~aaisP~~d~VilgGGqeA~d 256 (327)
T KOG0643|consen 183 VDSDEEHS--SKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEV---LKTYTTERPVNTAAISPLLDHVILGGGQEAMD 256 (327)
T ss_pred eechhhhc--cccccccccC-CcceEEecccCccceeeeccceee---EEEeeecccccceecccccceEEecCCceeee
Confidence 54434444 4899999999 999999999999999999987544 455556789999999997777776654332
Q ss_pred EEEEEcccccccCCCccee---ecccccccCCce-eEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc
Q 016032 230 LRIWDSIFGNLDSPSREIV---HSHDFNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 299 (396)
Q Consensus 230 i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~ 299 (396)
|.-=+.+.|+.....-..+ ....+.+|..|+ .++|+|+ |...+ +|+.||.|++.-...
T Consensus 257 VTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd---------GksYs---SGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 257 VTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD---------GKSYS---SGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC---------Ccccc---cCCCCceEEEEEecc
Confidence 3333333343322111111 112334454443 6899999 77777 899999999986543
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.5e-28 Score=187.38 Aligned_cols=219 Identities=17% Similarity=0.257 Sum_probs=182.6
Q ss_pred CCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeec------cc-------------------------
Q 016032 4 AHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDF------YK------------------------- 52 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~------~~------------------------- 52 (396)
-|.++.+.|+..+.||.+.|+|++|++.+ .++++++.|++..||.. ..
T Consensus 174 iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~ 252 (481)
T KOG0300|consen 174 IWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDS 252 (481)
T ss_pred EEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccc
Confidence 38999999999999999999999999998 69999999999999983 11
Q ss_pred --------ceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEe
Q 016032 53 --------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 124 (396)
Q Consensus 53 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 124 (396)
-..+...+.+|...|.+..|... ++.+++++.|.+..+||+++++.+..+..+... ++.++-
T Consensus 253 ~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E---------LtHcst 322 (481)
T KOG0300|consen 253 SEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVETGEVVNILTGHDSE---------LTHCST 322 (481)
T ss_pred ccccCCceeeeeeeeeeccccceEehhhhcC-cceeeeeeccccceeeeeccCceeccccCcchh---------cccccc
Confidence 00111122679999999999987 999999999999999999999999888766554 777888
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCC
Q 016032 125 NPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP 204 (396)
Q Consensus 125 ~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 204 (396)
+|..+++++++.|-+.++||.+..- .....+.+|...|+++.|.. +..+++|++|.+|++||++++.. .+..+.
T Consensus 323 HptQrLVvTsSrDtTFRLWDFReaI--~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRs--plATIR 396 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFREAI--QSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRS--PLATIR 396 (481)
T ss_pred CCcceEEEEeccCceeEeccchhhc--ceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccccC--cceeee
Confidence 9999999999999999999999533 33445666777899999985 67799999999999999997654 555556
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 205 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
...+++.++.+..+.+++.--.+..|++||+...+
T Consensus 397 tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 397 TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 77889999999888888888888889999986443
No 102
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-25 Score=166.57 Aligned_cols=284 Identities=15% Similarity=0.240 Sum_probs=204.2
Q ss_pred cccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc--------------eeeeEecCCcccceeEEEEecCCCcEEEEE
Q 016032 18 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--------------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 18 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 83 (396)
.-+..|.+++|+|.| .+.+.|+...+.+|...... .......+.|.+.|+|.+|+|. ++++++|
T Consensus 30 ~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatg 107 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATG 107 (350)
T ss_pred cchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEec
Confidence 356789999999999 68999999999998765321 1111122568999999999999 9999999
Q ss_pred eCCCeEEEEECCCCcccc-----eeecCCCCCCCCCcceeeeEEEeCCC----CCEEEEE-ecCCeEEEEeCCCCCCCcc
Q 016032 84 SSDGTVSCTDLETGLALS-----LMNVNPNGWHGPRTWRMLYGMDINPE----KGVVLVA-DNFGFLYLVDARTNSRSGE 153 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~-~~~g~i~i~d~~~~~~~~~ 153 (396)
+.|.+|++..++...+.. .+..+. ..|..++|..+ +..|+++ ..|..|++-|...++...
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhd---------gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~- 177 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHD---------GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH- 177 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecC---------CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce-
Confidence 999999998776544322 222222 33888998543 4555554 345678888888776543
Q ss_pred ceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCC-----CCCceeEEEEcCCCCEEEEEeCCC
Q 016032 154 AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-----HKRVVNSAYFSPSGSKILTTSQDN 228 (396)
Q Consensus 154 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~ 228 (396)
....|.+-|.++--- ++-++++|+.|.+|++||++-......+..-- ....|.+++..|.|++|++|-.|.
T Consensus 178 --a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 178 --ALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred --eecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 234455567665322 67899999999999999998755544433221 235799999999999999999999
Q ss_pred cEEEEEcccccccCCCcceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhh-
Q 016032 229 RLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEV- 306 (396)
Q Consensus 229 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~- 306 (396)
...+||++.++.++.. ..+. ..-++.|+|. ..|+. +++.|..|++-|++ |.+..++
T Consensus 254 sc~lydirg~r~iq~f---------~phsadir~vrfsp~---------a~yll---t~syd~~ikltdlq-gdla~el~ 311 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRF---------HPHSADIRCVRFSPG---------AHYLL---TCSYDMKIKLTDLQ-GDLAHELP 311 (350)
T ss_pred ceEEEEeeCCceeeee---------CCCccceeEEEeCCC---------ceEEE---EecccceEEEeecc-cchhhcCc
Confidence 9999999988875421 1121 1236789997 67777 89999999999985 3333332
Q ss_pred ----cCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCC
Q 016032 307 ----MDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 307 ----~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
..|. ..+..+ .|+|..--+++.+ |.++.+|-+.
T Consensus 312 ~~vv~ehk-dk~i~~-rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMVVAEHK-DKAIQC-RWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecc-CceEEE-EecCccceeeeccCcceEEEeccC
Confidence 2444 444444 6999998888888 9999999763
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=5.6e-26 Score=193.19 Aligned_cols=284 Identities=13% Similarity=0.178 Sum_probs=198.6
Q ss_pred cEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEE-EEEeCCCeEEEEECCCCcccceeecCCCCCCC
Q 016032 34 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLMNVNPNGWHG 112 (396)
Q Consensus 34 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 112 (396)
.++++++.|+.|++||+.+++....+. .+ ..+.+++|+|+ +..+ ++++.++.|++||+.+++....+.....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---- 74 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---- 74 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEeccCCCC----
Confidence 478899999999999998887766663 33 44778999999 6655 6677899999999998877655432211
Q ss_pred CCcceeeeEEEeCCCCCEEEEE-ecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCC-cEEEEe
Q 016032 113 PRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH-FARIWD 190 (396)
Q Consensus 113 ~~~~~~v~~~~~~~~~~~l~~~-~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~i~~wd 190 (396)
+..++|+|+++.++++ ..++.+++||+++...... ......+.+++|+| ++.++++++.++ .+.+||
T Consensus 75 ------~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~----~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 75 ------PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE----IPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFID 143 (300)
T ss_pred ------ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE----eeCCCCcceEEECC-CCCEEEEEecCCCeEEEEe
Confidence 4567899999977665 4678999999987543321 12223467899999 999999888765 467789
Q ss_pred cCCCCCCCccccCCCCCceeEEEEcCCCCEEEEE-eCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCC
Q 016032 191 IRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 269 (396)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (396)
.++.+.... ......+.+++|+|++++|+++ ..++.|.+||+.+++......... .........+..+.|+|+
T Consensus 144 ~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~s~d-- 217 (300)
T TIGR03866 144 TKTYEIVDN---VLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI-PGVHPEAVQPVGIKLTKD-- 217 (300)
T ss_pred CCCCeEEEE---EEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc-cccccccCCccceEECCC--
Confidence 865433221 1123346789999999988655 468999999999887543221100 000111223446778887
Q ss_pred CCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEee-c-CCcEEEEcCCCcceee
Q 016032 270 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG-S-SRSIFIWRPKEKSELV 347 (396)
Q Consensus 270 ~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg-~-d~~i~iw~~~~~~~~~ 347 (396)
|+++.. ....++.|.+||+.+++.+..+..+ ..+.++ +|+|+|++|+++ + ++.|++||+.+++.+.
T Consensus 218 -------g~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~-~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 218 -------GKTAFV--ALGPANRVAVVDAKTYEVLDYLLVG--QRVWQL-AFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred -------CCEEEE--EcCCCCeEEEEECCCCcEEEEEEeC--CCcceE-EECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 554331 2334567999999988876554322 356667 899999999886 4 8999999999999888
Q ss_pred eccccc
Q 016032 348 EQKEEM 353 (396)
Q Consensus 348 ~~~~~~ 353 (396)
.++...
T Consensus 286 ~~~~~~ 291 (300)
T TIGR03866 286 SIKVGR 291 (300)
T ss_pred EEEccc
Confidence 876543
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=189.05 Aligned_cols=292 Identities=14% Similarity=0.256 Sum_probs=213.5
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee--eeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCC
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 97 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 97 (396)
.++|+++.|+|.. .+|++++.|++++||.+..... +..+ .--..+|.+.+|.|++...+++++....++.||+.+.
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 4689999999998 5899999999999999976432 2222 2356799999999994449999999999999999988
Q ss_pred cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEE
Q 016032 98 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
+....-...... ...+..+..++++++|+..+..|.|++....+++.+..+ .-.+.+..++|+. ++..|
T Consensus 291 k~~k~~~~~g~e------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~----KieG~v~~~~fsS-dsk~l 359 (514)
T KOG2055|consen 291 KVTKLKPPYGVE------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF----KIEGVVSDFTFSS-DSKEL 359 (514)
T ss_pred ccccccCCCCcc------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee----eeccEEeeEEEec-CCcEE
Confidence 765443222111 123778889999999999999999999999987766433 3344799999998 89999
Q ss_pred EEeeCCCcEEEEecCCCCCCCccccCCCCCce--eEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccc
Q 016032 178 LSCGNDHFARIWDIRRLEAGSSLCDLPHKRVV--NSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 255 (396)
Q Consensus 178 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 255 (396)
++++.+|.|++||++.... +..+...+.| ++++.++++.+||+|+..|.|.|||..+-........+ ..+..
T Consensus 360 ~~~~~~GeV~v~nl~~~~~---~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPi---k~~dN 433 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSC---LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPI---KTVDN 433 (514)
T ss_pred EEEcCCceEEEEecCCcce---EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCch---hhhhh
Confidence 9999999999999987543 3333233333 56778899999999999999999997754332211111 11111
Q ss_pred cC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcC--CCCCCCcceeeeccCCcEEEeec-
Q 016032 256 HL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD--PNITTISPVNKLHPRDDVLASGS- 331 (396)
Q Consensus 256 ~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~sg~- 331 (396)
-. ....+.|+|+. ++++.. +-.....+++-.+.+......+.. ...+.++++ +|+|.+.+||.|.
T Consensus 434 Ltt~Itsl~Fn~d~---------qiLAia-S~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~-aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 434 LTTAITSLQFNHDA---------QILAIA-SRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM-AFSPNSGYLAVGNE 502 (514)
T ss_pred hheeeeeeeeCcch---------hhhhhh-hhccccceEEEeccceeeeccCCCCCCcccceEEE-EecCCCceEEeecC
Confidence 11 12368899883 333311 344567788888877666555442 234567788 9999999999999
Q ss_pred CCcEEEEcCC
Q 016032 332 SRSIFIWRPK 341 (396)
Q Consensus 332 d~~i~iw~~~ 341 (396)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 8999999874
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.6e-27 Score=192.25 Aligned_cols=213 Identities=18% Similarity=0.280 Sum_probs=172.6
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee------eeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
-..|.||+..-+.|+|++...-.|++|+.|+.|++||+..... ......+|...|..++|++....+|++++.|
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd 249 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD 249 (422)
T ss_pred ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence 3589999998999999998777899999999999999976433 2334478999999999999988899999999
Q ss_pred CeEEEEECCCC--cccceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 87 GTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 87 g~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
+.+.|||++++ +.......+. ..++|++|+|- +..||+|+.|++|.+||+|..... +.....|...
T Consensus 250 ~~L~iwD~R~~~~~~~~~~~ah~---------~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~--lh~~e~H~de 318 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSVKAHS---------AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP--LHTFEGHEDE 318 (422)
T ss_pred CeEEEEEcCCCCCCCcccccccC---------CceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--ceeccCCCcc
Confidence 99999999963 3333332222 34999999996 567788899999999999997763 4456667779
Q ss_pred EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCC-----------c-cccCCCCCceeEEEEcCCCC-EEEEEeCCCcE
Q 016032 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS-----------S-LCDLPHKRVVNSAYFSPSGS-KILTTSQDNRL 230 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-----------~-~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i 230 (396)
|..+.|+|.....|++++.|+.+.+||+..-...+ . +..-+|...|..+.|+|+.. .|++.+.|+.+
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 99999999888999999999999999996533222 1 22237999999999999655 56788899999
Q ss_pred EEEEcc
Q 016032 231 RIWDSI 236 (396)
Q Consensus 231 ~iwd~~ 236 (396)
.||.+.
T Consensus 399 qIW~~s 404 (422)
T KOG0264|consen 399 QIWQMA 404 (422)
T ss_pred EEeecc
Confidence 999986
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.1e-26 Score=197.98 Aligned_cols=283 Identities=14% Similarity=0.195 Sum_probs=217.0
Q ss_pred CccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee-EecCCcccceeE-EEEecCCCcEEEEEeCC
Q 016032 9 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI-VYGNIHSCIVNN-IRFNPTNDGTVYAASSD 86 (396)
Q Consensus 9 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~-~~~~~~~~~~l~s~~~d 86 (396)
..+.-+.+.||...|..+++.+.. .++++|.||++++|+-...+... ....+|.+.|.. +++.+.....+++|+.|
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred cceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 344567899999999999988765 69999999999999987665444 333567777777 88886436679999999
Q ss_pred CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEE
Q 016032 87 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 166 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 166 (396)
.++.+|...+..+...+..|... |.+++...++. +++|+.|.++++|-+..... ....|...|.+
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~sn---------VC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-----~l~gH~asVWA 145 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSN---------VCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-----SLQGHTASVWA 145 (745)
T ss_pred ceEEEEecCCCCchhhhhccccc---------eeeeecCCcCc-eEecccccceEEecchhhhc-----ccCCcchheee
Confidence 99999999999999888776654 88888887777 99999999999998876432 24567778999
Q ss_pred EEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCc
Q 016032 167 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSR 245 (396)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 245 (396)
++..| ++ .+++|+.|.+|++|.- ...++++ +|...|..+++-+++ .+++++.||.|++|++ +|+++.
T Consensus 146 v~~l~-e~-~~vTgsaDKtIklWk~-----~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~--- 213 (745)
T KOG0301|consen 146 VASLP-EN-TYVTGSADKTIKLWKG-----GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLL--- 213 (745)
T ss_pred eeecC-CC-cEEeccCcceeeeccC-----CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceee---
Confidence 99998 44 8999999999999986 3344444 799999999999765 4788999999999999 444432
Q ss_pred ceeecccccccCC-ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCC
Q 016032 246 EIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 324 (396)
Q Consensus 246 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (396)
.+.+|.. .+++...+. +..++ +.+.|+++++|+.. ++.+.+..+. ..++++ .+-++|
T Consensus 214 ------~~~ghtn~vYsis~~~~---------~~~Iv---s~gEDrtlriW~~~--e~~q~I~lPt-tsiWsa-~~L~Ng 271 (745)
T KOG0301|consen 214 ------EMHGHTNFVYSISMALS---------DGLIV---STGEDRTLRIWKKD--ECVQVITLPT-TSIWSA-KVLLNG 271 (745)
T ss_pred ------eeeccceEEEEEEecCC---------CCeEE---EecCCceEEEeecC--ceEEEEecCc-cceEEE-EEeeCC
Confidence 1112211 123332222 44555 68999999999975 6666665554 677777 677888
Q ss_pred cEEEeecCCcEEEEcCCC
Q 016032 325 DVLASGSSRSIFIWRPKE 342 (396)
Q Consensus 325 ~~l~sg~d~~i~iw~~~~ 342 (396)
.+++.|+||.||||....
T Consensus 272 DIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 272 DIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CEEEeccCceEEEEEecc
Confidence 877777799999998763
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.4e-26 Score=177.44 Aligned_cols=246 Identities=15% Similarity=0.200 Sum_probs=189.1
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCc--EEEEEeCCCe
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG--TVYAASSDGT 88 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg~ 88 (396)
..+..+..|.++|++++.+ + .++|+|+.|-+|+|||..+......+ -.|.+.|+++.|.+. .. .|++|+.||.
T Consensus 34 ~~lF~~~aH~~sitavAVs--~-~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~-~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--G-PYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPP-LSKSHLLSGSDDGH 108 (362)
T ss_pred eccccccccccceeEEEec--c-eeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCC-cchhheeeecCCCc
Confidence 3456788999999999997 5 68999999999999999998877777 459999999999987 44 8999999999
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
|.+|+...-..+..++.+... |+.++++|.+++-++.+.|+.+++||+-.++....... .+ ....+.
T Consensus 109 i~iw~~~~W~~~~slK~H~~~---------Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~--~at~v~ 175 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQ---------VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--KN--KATLVS 175 (362)
T ss_pred EEEEEcCCeEEeeeecccccc---------cceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--CC--cceeeE
Confidence 999999998888888766543 99999999999999999999999999988775543211 12 344599
Q ss_pred eccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCccee
Q 016032 169 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 248 (396)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 248 (396)
|+| .+.+++.+.. ..|-+|.+.+.. .+........+.++.|. ++..|++|..|+.|.+||.......
T Consensus 176 w~~-~Gd~F~v~~~-~~i~i~q~d~A~---v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~------- 242 (362)
T KOG0294|consen 176 WSP-QGDHFVVSGR-NKIDIYQLDNAS---VFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPL------- 242 (362)
T ss_pred EcC-CCCEEEEEec-cEEEEEecccHh---Hhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccc-------
Confidence 999 8998888776 468899886533 33333344557777776 6678999999999999999874431
Q ss_pred ecccccccCCce---eEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccc
Q 016032 249 HSHDFNRHLTPF---RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 301 (396)
Q Consensus 249 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~ 301 (396)
..+..|...+ ...-.|. +.|+. +.+.||.|+|||+....
T Consensus 243 --~~~~AH~~RVK~i~~~~~~~---------~~~lv---TaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 243 --TEFLAHENRVKDIASYTNPE---------HEYLV---TASSDGFIKVWDIDMET 284 (362)
T ss_pred --eeeecchhheeeeEEEecCC---------ceEEE---EeccCceEEEEEccccc
Confidence 1222222221 1222333 57777 88999999999997553
No 108
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=188.85 Aligned_cols=255 Identities=16% Similarity=0.232 Sum_probs=205.0
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
|++....++.+++.|.+.|..|++.. + .+++++.|.+|+.|.+... ....+. ....+..+.-+.. +..++|++
T Consensus 94 WnlsqR~~~~~f~AH~G~V~Gi~v~~-~--~~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~-~~~FaTcG 166 (433)
T KOG0268|consen 94 WNLSQRECIRTFKAHEGLVRGICVTQ-T--SFFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRK-NSVFATCG 166 (433)
T ss_pred EehhhhhhhheeecccCceeeEEecc-c--ceEEecCCcceeeeeccCC-cceeee--ccccccccccccc-cccccccC
Confidence 88999999999999999999999987 3 3788899999999998874 444443 4566778887776 78889988
Q ss_pred CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCC-EEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 85 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
.+ |.|||..-..++..+....+. |.++.|+|... .|+++..|+.|.+||+++..++.+..... .
T Consensus 167 e~--i~IWD~~R~~Pv~smswG~Dt---------i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m----R 231 (433)
T KOG0268|consen 167 EQ--IDIWDEQRDNPVSSMSWGADS---------ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM----R 231 (433)
T ss_pred ce--eeecccccCCccceeecCCCc---------eeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec----c
Confidence 64 999999888888877655443 89999999765 55566699999999999988876654332 4
Q ss_pred EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCC
Q 016032 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 243 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 243 (396)
-+.|+|+| +...|++|++|..++.||++..+....+ ..+|.+.|..+.|||.|+-+++|+.|.+|+||..+.+..
T Consensus 232 TN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v-~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S--- 306 (433)
T KOG0268|consen 232 TNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNV-HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS--- 306 (433)
T ss_pred ccceecCc-cccceeeccccccceehhhhhhcccchh-hcccceeEEEeccCCCcchhccccccceEEEeecCCCcc---
Confidence 67899999 9999999999999999999976553322 237999999999999999999999999999999987654
Q ss_pred CcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccch
Q 016032 244 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 302 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~ 302 (396)
+++++...+ ...+++.|+.+ .+|+. +|+.|+.|++|-....+.
T Consensus 307 -RdiYhtkRM---q~V~~Vk~S~D---------skyi~---SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 307 -RDIYHTKRM---QHVFCVKYSMD---------SKYII---SGSDDGNVRLWKAKASEK 349 (433)
T ss_pred -hhhhhHhhh---heeeEEEEecc---------ccEEE---ecCCCcceeeeecchhhh
Confidence 333333332 33458899988 88998 999999999998764443
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.6e-26 Score=197.82 Aligned_cols=298 Identities=17% Similarity=0.272 Sum_probs=229.7
Q ss_pred eeeeccccCCeEEEEecCCC----------CcEEEEEeCCCcEEEeecccceeeeEe----c------------------
Q 016032 13 CAVIRYHSRRVTCLEFHPTN----------NHILLSGDKKGQVGVWDFYKVSEKIVY----G------------------ 60 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~----------~~~l~s~~~dg~i~iwd~~~~~~~~~~----~------------------ 60 (396)
...+-.|...|+.+.--|-+ +..++|++.|++|++|++.....-..+ .
T Consensus 362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence 34566799999988876621 125899999999999999752111000 0
Q ss_pred --------------CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCC
Q 016032 61 --------------NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP 126 (396)
Q Consensus 61 --------------~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 126 (396)
-+....+.+++.+|+ +++|++|..-|.+++|++..-+....++.+... |.|+.|+.
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE---------ilcLeyS~ 511 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFMEAHESE---------ILCLEYSF 511 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECCC-cceecccCccCceEEEEehhhhhhhheecccce---------eEEEeecC
Confidence 012346999999999 999999999999999999988888877766544 99999976
Q ss_pred C---CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCC--CEEEEeeCCCcEEEEecCCCCCCCccc
Q 016032 127 E---KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--ELLLSCGNDHFARIWDIRRLEAGSSLC 201 (396)
Q Consensus 127 ~---~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~ 201 (396)
. .++|++++.|.-|++||+...-.+.. ....|...|+++.|.. .+ ..+++++.|..|.+--.+....+..+.
T Consensus 512 p~~~~kLLASasrdRlIHV~Dv~rny~l~q--tld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 512 PVLTNKLLASASRDRLIHVYDVKRNYDLVQ--TLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred chhhhHhhhhccCCceEEEEecccccchhh--hhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceecc
Confidence 3 57899999999999999987655443 3455666899999987 44 567888888877654333222222222
Q ss_pred cC---CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEee
Q 016032 202 DL---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 278 (396)
Q Consensus 202 ~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (396)
.. -....+..++..|..+++++++.|..|+||++.++++.+... .........+.+..+|. |.
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK-----gs~~~eG~lIKv~lDPS---------gi 654 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK-----GSRDHEGDLIKVILDPS---------GI 654 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec-----ccccCCCceEEEEECCC---------cc
Confidence 11 134568899999999999999999999999999999865332 22333345567888887 99
Q ss_pred eeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCC
Q 016032 279 YISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 342 (396)
Q Consensus 279 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~ 342 (396)
|++ +.+.|.++.++|..+|+++.++.+|. ..++.+ .|.+|-+.|++.+ ||.|.||.+..
T Consensus 655 Y~a---tScsdktl~~~Df~sgEcvA~m~GHs-E~VTG~-kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 655 YLA---TSCSDKTLCFVDFVSGECVAQMTGHS-EAVTGV-KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEE---EeecCCceEEEEeccchhhhhhcCcc-hheeee-eecccchhheeecCCceEEEEECch
Confidence 999 88999999999999999999999987 888998 8999999999988 99999999865
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.8e-26 Score=200.64 Aligned_cols=252 Identities=13% Similarity=0.189 Sum_probs=200.9
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCC-cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCe
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 139 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 139 (396)
..|....+.|+|.|+ +.+|++++.||.|++|+.... +....+.... ..+.+++. .+++|++++.++.
T Consensus 10 yaht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g---------~~v~~ia~--~s~~f~~~s~~~t 77 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISG---------ELVSSIAC--YSNHFLTGSEQNT 77 (933)
T ss_pred hhccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccC---------ceeEEEee--cccceEEeeccce
Confidence 358899999999999 889999999999999998765 3323322111 22555554 4568999999999
Q ss_pred EEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCC
Q 016032 140 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 219 (396)
Q Consensus 140 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (396)
|.+|.+..+..-.-+ .....++++++++. ++.+++.|+.|-.|++-++........ ..+|.++|.++.|+|++.
T Consensus 78 v~~y~fps~~~~~iL---~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~--lrgh~apVl~l~~~p~~~ 151 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTIL---ARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKV--LRGHDAPVLQLSYDPKGN 151 (933)
T ss_pred EEEeeCCCCCcccee---eeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchhee--ecccCCceeeeeEcCCCC
Confidence 999999887654322 22233799999998 999999999999999999876544333 347999999999999999
Q ss_pred EEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc
Q 016032 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 299 (396)
Q Consensus 220 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~ 299 (396)
+||+.+.||.|++||+.++.+......+.....+.......+.+|+|++ |.+++ -..|+.|++|+..+
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~--------g~la~----~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG--------GTLAV----PPVDNTVKVYSRKG 219 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC--------CeEEe----eccCCeEEEEccCC
Confidence 9999999999999999999987766666666665544445679999995 55554 57789999999999
Q ss_pred cchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCC
Q 016032 300 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 342 (396)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~ 342 (396)
++....+.........+.++|+|+|.|||+++ ||.|.|||+++
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999888765555344449999999999999 99999999996
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3e-25 Score=164.55 Aligned_cols=257 Identities=18% Similarity=0.259 Sum_probs=188.3
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee----EecCCcccceeEEEEecC---CCcEEEEE
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI----VYGNIHSCIVNNIRFNPT---NDGTVYAA 83 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~~l~s~ 83 (396)
...+.-+.|.+.|.|.+|+|+| .+|++|+.|.+|++.-++...+.. .-..-|.+.|..++|..+ ++..|+++
T Consensus 80 v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred EEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 3345556799999999999999 699999999999998775432211 111459999999999754 24567775
Q ss_pred e-CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCcccee-eecC-
Q 016032 84 S-SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-IHRK- 160 (396)
Q Consensus 84 ~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~-~~~~- 160 (396)
+ .|..|.+-|...|+....+..+... |.++ ++-++-++++|+.|.+|++||++-......+-. .+..
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtgh---------ilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGH---------ILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG 228 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCccc---------EEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence 5 3777888888888888777554432 5444 455788999999999999999998765543321 2222
Q ss_pred --CccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 016032 161 --GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 161 --~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 238 (396)
...|.+++..| .+++|++|-.|....+||++-+...+.+ ..|...|.++.|+|...+|++++.|..|++-|+...
T Consensus 229 lessavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f--~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 229 LESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRF--HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred cccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeee--CCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 25799999999 9999999999999999999876554443 269999999999999999999999999999999743
Q ss_pred cccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 239 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
+...+.. .......-..+.+.|+|.+ + .|+ +.+.|.++.+|-+
T Consensus 306 -la~el~~---~vv~ehkdk~i~~rwh~~d----~----sfi----sssadkt~tlwa~ 348 (350)
T KOG0641|consen 306 -LAHELPI---MVVAEHKDKAIQCRWHPQD----F----SFI----SSSADKTATLWAL 348 (350)
T ss_pred -hhhcCce---EEEEeccCceEEEEecCcc----c----eee----eccCcceEEEecc
Confidence 2111111 1111122234689999974 1 122 5788999999975
No 112
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=9.6e-26 Score=193.17 Aligned_cols=315 Identities=17% Similarity=0.191 Sum_probs=224.8
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEe--cCCcccceeEEEEecCC----------CcEEEEEeCCCeE
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVY--GNIHSCIVNNIRFNPTN----------DGTVYAASSDGTV 89 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~----------~~~l~s~~~dg~v 89 (396)
...++.|.|.. ..|.+...|..++|||++....+... .--|...|..+.-.|-+ ...|++++.|++|
T Consensus 326 D~IA~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 326 DAIACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred ceeEEEecCCC-ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 34567899887 46888889999999999874432211 12388888888766521 3468999999999
Q ss_pred EEEECCCCcccceeec-------------CC---------------CCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEE
Q 016032 90 SCTDLETGLALSLMNV-------------NP---------------NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 141 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~-------------~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 141 (396)
++|++..+..-..+.- .. ...........+.+++.+|++++|++|..-|.++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 9999986322111100 00 0001112223489999999999999999999999
Q ss_pred EEeCCCCCCCccceeeecCCccEEEEEeccC--CCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCC
Q 016032 142 LVDARTNSRSGEAILIHRKGSKVVGLHCNPI--QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSG 218 (396)
Q Consensus 142 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 218 (396)
+|++....... ....|...|.|+.++.. ...+|++++.|..|.+||+.. ....++++ +|...|+++.|--+|
T Consensus 485 Vy~Lq~l~~~~---~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r--ny~l~qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 485 VYDLQELEYTC---FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR--NYDLVQTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred EEEehhhhhhh---heecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--ccchhhhhcccccceeEEEEeecC
Confidence 99998755432 44567778999999852 346899999999999999863 23334444 799999999998877
Q ss_pred --CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEE
Q 016032 219 --SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFID 296 (396)
Q Consensus 219 --~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd 296 (396)
..+++++.|..|. |+..... .....+.......++.+.+.+...|. ..+++ +++.|..|+||+
T Consensus 560 ln~~MiscGADksim-Fr~~qk~--~~g~~f~r~t~t~~ktTlYDm~Vdp~---------~k~v~---t~cQDrnirif~ 624 (1080)
T KOG1408|consen 560 LNRKMISCGADKSIM-FRVNQKA--SSGRLFPRHTQTLSKTTLYDMAVDPT---------SKLVV---TVCQDRNIRIFD 624 (1080)
T ss_pred CceEEEeccCchhhh-eehhccc--cCceeccccccccccceEEEeeeCCC---------cceEE---EEecccceEEEe
Confidence 6789999997764 4443211 00011111222334444556777776 56666 789999999999
Q ss_pred cCccchhhhhcCCCC--CCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEe
Q 016032 297 ITTGQLVAEVMDPNI--TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVC 358 (396)
Q Consensus 297 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~ 358 (396)
+++|+....|++.+. +...-+ ...|.|-|||+.. |.+|.++|..+|+++..+.+|++.++.
T Consensus 625 i~sgKq~k~FKgs~~~eG~lIKv-~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 625 IESGKQVKSFKGSRDHEGDLIKV-ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTG 688 (1080)
T ss_pred ccccceeeeecccccCCCceEEE-EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheee
Confidence 999999999986542 233333 5899999999977 999999999999999999999987543
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.4e-26 Score=190.52 Aligned_cols=284 Identities=14% Similarity=0.202 Sum_probs=218.2
Q ss_pred eccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceee---eEec-CCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 16 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK---IVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 16 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
.-.|.+-|.++.++... +.+.||+. |.|+|||+...... ..+. ..-..-|+++...|+ ++.|++|+.-.+|.|
T Consensus 415 tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd-grtLivGGeastlsi 491 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD-GRTLIVGGEASTLSI 491 (705)
T ss_pred hhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC-CceEEeccccceeee
Confidence 34589999999999887 68999985 78999999764211 1111 124567899999999 999999999999999
Q ss_pred EECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 92 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
||+.........++.... ...++++.+||.+..+++..||.|.|||++....+. .+..|...+.||.+++
T Consensus 492 WDLAapTprikaeltssa-------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr---qfqGhtDGascIdis~ 561 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSA-------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR---QFQGHTDGASCIDISK 561 (705)
T ss_pred eeccCCCcchhhhcCCcc-------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeee---cccCCCCCceeEEecC
Confidence 999876554333332211 227789999999999999999999999999866554 3456666799999999
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecc
Q 016032 172 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 251 (396)
Q Consensus 172 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 251 (396)
++..|.+|+-|.+|+.||+++... +........|.++.++|++.+|++|-.++.+.+......+. ..++.
T Consensus 562 -dGtklWTGGlDntvRcWDlregrq---lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----yqlhl- 631 (705)
T KOG0639|consen 562 -DGTKLWTGGLDNTVRCWDLREGRQ---LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----YQLHL- 631 (705)
T ss_pred -CCceeecCCCccceeehhhhhhhh---hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc-----eeecc-
Confidence 999999999999999999986443 33344577899999999999999999999998877653321 11111
Q ss_pred cccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec
Q 016032 252 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 331 (396)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~ 331 (396)
.....+.+.|.+. |++.+ +.+.|+-+..|.+.-|..+..... ...|.++ .++.|.++|++|+
T Consensus 632 ---heScVLSlKFa~c---------Gkwfv---StGkDnlLnawrtPyGasiFqskE--~SsVlsC-DIS~ddkyIVTGS 693 (705)
T KOG0639|consen 632 ---HESCVLSLKFAYC---------GKWFV---STGKDNLLNAWRTPYGASIFQSKE--SSSVLSC-DISFDDKYIVTGS 693 (705)
T ss_pred ---cccEEEEEEeccc---------Cceee---ecCchhhhhhccCccccceeeccc--cCcceee-eeccCceEEEecC
Confidence 1111245667666 88888 888999999999988887765543 3667777 8999999999999
Q ss_pred -CCcEEEEcC
Q 016032 332 -SRSIFIWRP 340 (396)
Q Consensus 332 -d~~i~iw~~ 340 (396)
|....||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 988888865
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.3e-26 Score=175.36 Aligned_cols=260 Identities=15% Similarity=0.168 Sum_probs=187.8
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCC-CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCe
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 139 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 139 (396)
......|.+|+|+|....++++++.|++||+|+++. |....... ..+..++.+++|+.+|..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~--------~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ--------QSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh--------hccCCCeEEEEEccCCceEEeeccCCc
Confidence 457788999999996466777999999999999987 33332211 122234999999999999999999999
Q ss_pred EEEEeCCCCCCCccceeeecCCccEEEEEeccCCCC--EEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCC
Q 016032 140 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE--LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 217 (396)
Q Consensus 140 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (396)
+++||+.+++.. ....|..+|..+.|-+ ... .|++|+.|.+|+.||+|.... +..+.-...+.++.. -
T Consensus 96 ~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~p---v~t~~LPeRvYa~Dv--~ 165 (347)
T KOG0647|consen 96 AKLWDLASGQVS----QVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNP---VATLQLPERVYAADV--L 165 (347)
T ss_pred eEEEEccCCCee----eeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCe---eeeeeccceeeehhc--c
Confidence 999999997433 4566777999999987 444 899999999999999986444 333345566666655 4
Q ss_pred CCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCce-----eEEeCCCCCCCceeeEeeeeeeecccccccce
Q 016032 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF-----RAEWDPKDPSESLAVIGRYISENYNGAALHPI 292 (396)
Q Consensus 218 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i 292 (396)
..+++++..+..|.+|+++++.... .+..+++ +++..++. ..+ + .|+-+|.+
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~-----------k~~~SpLk~Q~R~va~f~d~--------~~~-a---lGsiEGrv 222 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEF-----------KRIESPLKWQTRCVACFQDK--------DGF-A---LGSIEGRV 222 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchh-----------hhhcCcccceeeEEEEEecC--------Cce-E---eeeecceE
Confidence 5688899999999999997654211 1111110 12222221 111 2 47888999
Q ss_pred EEEEcCcc--chhhhhcCCCC----CC-Cccee--eeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEeecC
Q 016032 293 DFIDITTG--QLVAEVMDPNI----TT-ISPVN--KLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKA 361 (396)
Q Consensus 293 ~vwd~~~~--~~~~~~~~~~~----~~-i~~~~--~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 361 (396)
.|..+..+ +.-.+|+.|.. .. |++|+ +|+|.-..|++++ ||++.+||-+....+...+.+.+.+.|...
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSF 301 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEe
Confidence 99988776 33444555441 11 33333 8999988899866 999999999999999999998888887544
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=195.34 Aligned_cols=307 Identities=18% Similarity=0.268 Sum_probs=239.9
Q ss_pred CCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC
Q 016032 6 VIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS 85 (396)
Q Consensus 6 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 85 (396)
++...+.+..++.-.+.|++++|..||+.+||+|+..|.+.+||++..+........|.+.|..+.|.|. ...+++++.
T Consensus 230 NlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~-epVl~ta~~ 308 (910)
T KOG1539|consen 230 NLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG-EPVLVTAGA 308 (910)
T ss_pred EcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC-CceEeeccC
Confidence 3444556667775569999999999999899999999999999999988888887889999999999998 889999999
Q ss_pred CCeEEEEECCCCcc-----------------ccee-------e-cC--------------------C---------CCCC
Q 016032 86 DGTVSCTDLETGLA-----------------LSLM-------N-VN--------------------P---------NGWH 111 (396)
Q Consensus 86 dg~v~iwd~~~~~~-----------------~~~~-------~-~~--------------------~---------~~~~ 111 (396)
|..+++|=.+++.. +..+ . .. . ....
T Consensus 309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~ 388 (910)
T KOG1539|consen 309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF 388 (910)
T ss_pred CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence 99998886553211 0000 0 00 0 0000
Q ss_pred ---------------------------------------------------CCC----cceeeeEEEeCCCCCEEEEEec
Q 016032 112 ---------------------------------------------------GPR----TWRMLYGMDINPEKGVVLVADN 136 (396)
Q Consensus 112 ---------------------------------------------------~~~----~~~~v~~~~~~~~~~~l~~~~~ 136 (396)
.+. ....+.+++.++.|++.+.|+.
T Consensus 389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S 468 (910)
T KOG1539|consen 389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS 468 (910)
T ss_pred chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence 000 1134778899999999999999
Q ss_pred CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC
Q 016032 137 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 216 (396)
Q Consensus 137 ~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (396)
.|.|-+|+++++-..........|..+|++++... -++.+++++.+|.+.+||..... .+..+.-...+.++..+.
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~---l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKV---LKKSLRLGSSITGIVYHR 544 (910)
T ss_pred CCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcc---eeeeeccCCCcceeeeee
Confidence 99999999999876655544556777999999988 78899999999999999997644 333334556788899999
Q ss_pred CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccceEEE
Q 016032 217 SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 295 (396)
Q Consensus 217 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vw 295 (396)
...+++.+..|=.|+++|+.+.+..+ .+.+|... ..+.|||+ |++++ +++.|++|++|
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR---------~f~gh~nritd~~FS~D---------grWli---sasmD~tIr~w 603 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVR---------EFWGHGNRITDMTFSPD---------GRWLI---SASMDSTIRTW 603 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhH---------HhhccccceeeeEeCCC---------CcEEE---EeecCCcEEEE
Confidence 88899999999999999999877643 23333222 36889999 99999 89999999999
Q ss_pred EcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-C-CcEEEEcCC
Q 016032 296 DITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-S-RSIFIWRPK 341 (396)
Q Consensus 296 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d-~~i~iw~~~ 341 (396)
|+.++.++..+.-. .+...+ .|+|+|.+||+.. | ..|++|--.
T Consensus 604 Dlpt~~lID~~~vd--~~~~sl-s~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 604 DLPTGTLIDGLLVD--SPCTSL-SFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred eccCcceeeeEecC--Ccceee-EECCCCCEEEEEEecCceEEEEEch
Confidence 99999999877554 445566 8999999999998 7 889999643
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=194.34 Aligned_cols=219 Identities=20% Similarity=0.187 Sum_probs=180.4
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc--eeeeEecCCcccceeEEEE-ecCCCcEEEEEeCCC
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--SEKIVYGNIHSCIVNNIRF-NPTNDGTVYAASSDG 87 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg 87 (396)
+.+..++.|.+-|+.+...-++ +.|+++|.|-+|++|+.... .+...+ ..|..-|.|++. .++ ...+++|+.|+
T Consensus 64 ~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla~~ak~-~~lvaSgGLD~ 140 (735)
T KOG0308|consen 64 PYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLAYIAKN-NELVASGGLDR 140 (735)
T ss_pred chhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhh-hcccchheeeeecccC-ceeEEecCCCc
Confidence 3578899999999999999988 57999999999999999876 344444 679999999999 666 88999999999
Q ss_pred eEEEEECCCCc--ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEE
Q 016032 88 TVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 88 ~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
.|.+||++++. .+..+..-.....+......+++++.++.+..|++|+..+.+++||.++.+...++ .+|...|.
T Consensus 141 ~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL---rGHTdNVr 217 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL---RGHTDNVR 217 (735)
T ss_pred cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeee---eccccceE
Confidence 99999999883 33333322211111133345999999999999999999999999999998766543 46666899
Q ss_pred EEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 016032 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 238 (396)
++..++ +|..+++++.||+|++||+....+...+. .|...|.++..+|+-..+++|+.||.|..=|+++.
T Consensus 218 ~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~--vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 218 VLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYI--VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEEcC-CCCeEeecCCCceEEeeeccccceeeeEE--eccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999 99999999999999999998655443332 58888999999999999999999999999999874
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.6e-27 Score=200.99 Aligned_cols=204 Identities=22% Similarity=0.379 Sum_probs=165.9
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeeccc--ceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 99 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 99 (396)
.+..+.|+....++|||++..|.|.+||+.. ..........|...++++.|++....+|++|+.||+|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 3556788765557999999999999999987 23332333789999999999998889999999999999999999888
Q ss_pred cceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEE
Q 016032 100 LSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 178 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 178 (396)
...+....+. |..+.|+|. +..++++...|.+++||++....... ....|.++|.++.|+| +..+||
T Consensus 169 ~~t~~~nSES---------iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~--k~~AH~GpV~c~nwhP-nr~~lA 236 (839)
T KOG0269|consen 169 KSTFRSNSES---------IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK--KLTAHNGPVLCLNWHP-NREWLA 236 (839)
T ss_pred cccccccchh---------hhceeeccCCCceEEEecCCceEEEeeccCchhHHH--HhhcccCceEEEeecC-CCceee
Confidence 7777654433 899999996 78899999999999999999776543 4456677999999999 999999
Q ss_pred EeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCC-CEEEEEeC--CCcEEEEEcccc
Q 016032 179 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQ--DNRLRIWDSIFG 238 (396)
Q Consensus 179 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~--d~~i~iwd~~~~ 238 (396)
+|+.|+.|+|||+.+..... +..+....+|.++.|-|.. .+||+++. |-.|+|||++..
T Consensus 237 TGGRDK~vkiWd~t~~~~~~-~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 237 TGGRDKMVKIWDMTDSRAKP-KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ecCCCccEEEEeccCCCccc-eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 99999999999997654433 3334566789999999954 45777664 778999999743
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.8e-26 Score=176.61 Aligned_cols=217 Identities=18% Similarity=0.208 Sum_probs=173.1
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEE
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 90 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 90 (396)
...+.|.||.+.|+.++..... .++.+++.|.+.+||.++++.++..+ .+|.+.|+++.|++. +.++++++.|++-.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s-~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS-GLLLLTASGDETAH 215 (481)
T ss_pred eehhhhcccccceeeehhhcCC-cceeecccccceeEEeeccccceeee-cccccceeeEEeccc-cceEEEccCCcchH
Confidence 3456788999999999998876 48999999999999999999999998 799999999999999 99999999999999
Q ss_pred EEECCC----Ccccc-----------------------------eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC
Q 016032 91 CTDLET----GLALS-----------------------------LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF 137 (396)
Q Consensus 91 iwd~~~----~~~~~-----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 137 (396)
||...- .+... .+..+-..+.+ +...|.+..|-..++.+++++.|
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg--H~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG--HRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec--cccceEehhhhcCcceeeeeecc
Confidence 997321 11000 00000011111 22347778888899999999999
Q ss_pred CeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcC
Q 016032 138 GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP 216 (396)
Q Consensus 138 g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~ 216 (396)
.+..+||++++..... ..+|....+.++-+| ...++++.+.|.+.++||++. ....+..+ +|...|+++.|..
T Consensus 294 RTAnlwDVEtge~v~~---LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNI---LTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred ccceeeeeccCceecc---ccCcchhccccccCC-cceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEec
Confidence 9999999999887643 344555788999999 899999999999999999983 34444444 8999999999986
Q ss_pred CCCEEEEEeCCCcEEEEEccccc
Q 016032 217 SGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 217 ~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
+. .+++|+.|.+|++||+++.+
T Consensus 368 dd-~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 368 DD-RVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred CC-ceeecCCCceEEEeeecccc
Confidence 54 58899999999999998543
No 119
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.1e-26 Score=193.93 Aligned_cols=286 Identities=20% Similarity=0.261 Sum_probs=202.9
Q ss_pred cccCCeE---EEEecCCCCcEEEEEeCCCcEEEeeccccee------eeEecCCcccceeEEEEecCCCcEEEEEeCCCe
Q 016032 18 YHSRRVT---CLEFHPTNNHILLSGDKKGQVGVWDFYKVSE------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 88 (396)
Q Consensus 18 ~h~~~v~---~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 88 (396)
.|...|. .+..++.+.++|+||+.||.|++|++..... ...+ ..|...|+.+....+ ++.|+++|.|-+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~-~~tlIS~SsDtT 96 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN-GKTLISASSDTT 96 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC-CCceEEecCCce
Confidence 4566666 6666666668999999999999999875332 2333 569999999999888 889999999999
Q ss_pred EEEEECCCC--cccceeecCCCCCCCCCcceeeeEEEe-CCCCCEEEEEecCCeEEEEeCCCCCC--Cccc------eee
Q 016032 89 VSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDI-NPEKGVVLVADNFGFLYLVDARTNSR--SGEA------ILI 157 (396)
Q Consensus 89 v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~g~i~i~d~~~~~~--~~~~------~~~ 157 (396)
|++|+...+ -++..+..+.+. |.|+++ .++...+++|+-|+.|.+||+.++.. .... ...
T Consensus 97 VK~W~~~~~~~~c~stir~H~DY---------Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDY---------VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred EEEeecccCcchhHhhhhcccch---------heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence 999999887 455555444332 999999 88889999999999999999997632 1100 011
Q ss_pred ecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 158 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 158 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
.++...|.+++.++ .+..|++|+..+.|++||.++.+....+ .+|...|..+..+++|..+++++.||+|++||+..
T Consensus 168 sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkL--rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKL--RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CCCccceeeeecCC-cceEEEecCcccceEEeccccccceeee--eccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 14445799999999 8899999999999999999986654444 38999999999999999999999999999999987
Q ss_pred ccccCCCcceeecccccccCC-ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcc
Q 016032 238 GNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISP 316 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~ 316 (396)
.+++.+. .-|.. .+.+.-+|. +...|+|+.|+.|..=|+.+-.....+. ....++..
T Consensus 245 QrCl~T~---------~vH~e~VWaL~~~~s------------f~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~ 302 (735)
T KOG0308|consen 245 QRCLATY---------IVHKEGVWALQSSPS------------FTHVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLK 302 (735)
T ss_pred cceeeeE---------EeccCceEEEeeCCC------------cceEEecCCCCcEEecccCCchhheEee-cCCCchhh
Confidence 7765431 11111 112222222 1222379999999999998743222221 11133443
Q ss_pred eeeeccCCcEEEeec-CCcEEEEcC
Q 016032 317 VNKLHPRDDVLASGS-SRSIFIWRP 340 (396)
Q Consensus 317 ~~~~~~~~~~l~sg~-d~~i~iw~~ 340 (396)
+ ..+...+-+-+++ |+.|+-|..
T Consensus 303 l-~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 303 L-HLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred h-hhccccCCceeeeccccceecCC
Confidence 3 2332222223333 777777754
No 120
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=8.1e-26 Score=202.34 Aligned_cols=259 Identities=15% Similarity=0.161 Sum_probs=195.3
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccc----c-------------eeeeEecCCcccceeEEEE
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK----V-------------SEKIVYGNIHSCIVNNIRF 72 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~-------------~~~~~~~~~~~~~v~~~~~ 72 (396)
+..+.++..|.+.|+|+.|+||| ++||+|+.|+.|.||.... . ........+|...|..++|
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW 137 (942)
T ss_pred chhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence 44567788899999999999999 7999999999999999872 0 0122233789999999999
Q ss_pred ecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 016032 73 NPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG 152 (396)
Q Consensus 73 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~ 152 (396)
+|+ +.+|++++.|++|.+|+..+.+.+..+..+... |..+.|.|-|++|++-+.|++|++|++.......
T Consensus 138 sp~-~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~---------VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 138 SPD-DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL---------VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK 207 (942)
T ss_pred CCC-ccEEEEecccceEEEEccccceeeeeeeccccc---------ccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence 998 999999999999999999999888888766543 8899999999999999999999999976533222
Q ss_pred cce---eeecCCccEEEEEeccCCCCEEEEeeC----CCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-----CCC-
Q 016032 153 EAI---LIHRKGSKVVGLHCNPIQPELLLSCGN----DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-----SGS- 219 (396)
Q Consensus 153 ~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~- 219 (396)
.+. ...........+.|+| +|.+|++... -..+.|.+-.+.+. .....+|..++.++.|+| ..+
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tWk~--~~~LvGH~~p~evvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTWKV--DKDLVGHSAPVEVVRFNPKLFERNNKN 284 (942)
T ss_pred eeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCcee--eeeeecCCCceEEEEeChHHhcccccc
Confidence 111 1112233588999999 9999998643 23577766543322 233348999999999998 122
Q ss_pred -----------EEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeeccccc
Q 016032 220 -----------KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA 288 (396)
Q Consensus 220 -----------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 288 (396)
.+|+|+.|++|.||.....+.+-...+ - -....+.+.|+|+ |..+. ..+.
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~-----l--f~~SI~DmsWspd---------G~~Lf---acS~ 345 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN-----L--FNKSIVDMSWSPD---------GFSLF---ACSL 345 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh-----h--hcCceeeeeEcCC---------CCeEE---EEec
Confidence 678999999999999865443221111 1 1123358999999 65555 6799
Q ss_pred ccceEEEEcCccc
Q 016032 289 LHPIDFIDITTGQ 301 (396)
Q Consensus 289 d~~i~vwd~~~~~ 301 (396)
||+|.++.++..+
T Consensus 346 DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 346 DGTVALIHFEEKE 358 (942)
T ss_pred CCeEEEEEcchHH
Confidence 9999999987543
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.7e-26 Score=196.50 Aligned_cols=295 Identities=13% Similarity=0.214 Sum_probs=207.6
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee----eeEec--CCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYG--NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
....+|+.+++-.+ ++.++. ..+.||.+..... ..... +.-...+..+.|.....++|++++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~q-iv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQ-IVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcce-eEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 45667778888755 454443 3678887765321 11111 1122346678888655789999999999999999
Q ss_pred CC---CcccceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEec
Q 016032 95 ET---GLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 170 (396)
Q Consensus 95 ~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 170 (396)
.. .+.+..+..+... ++++.|++- ..+|++|+.||.|++||++........ ......|+.++|+
T Consensus 118 nk~~rnk~l~~f~EH~Rs---------~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~---~~nSESiRDV~fs 185 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERS---------ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF---RSNSESIRDVKFS 185 (839)
T ss_pred CccccchhhhHhhhhccc---------eeeeeeccCCccEEEecCCCceEEEEeeecccccccc---cccchhhhceeec
Confidence 87 3444455544443 999999885 678899999999999999987655432 2344579999999
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceee
Q 016032 171 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 249 (396)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 249 (396)
|..++.|+++.+.|.+++||+|.... ....+ .|.++|.++.|+|++.+||+|+.|+.|+|||+.+.+...
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r--~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~------- 256 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDR--CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP------- 256 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchh--HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc-------
Confidence 98899999999999999999996443 33333 899999999999999999999999999999998755421
Q ss_pred cccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeecc-CCcEEE
Q 016032 250 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP-RDDVLA 328 (396)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~ 328 (396)
.+..+.....-++.|-|... +..+..+-..|-.|+|||+......+.....|...++.+ +|.. +...|.
T Consensus 257 ~~tInTiapv~rVkWRP~~~---------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i-~W~~~d~~~l~ 326 (839)
T KOG0269|consen 257 KHTINTIAPVGRVKWRPARS---------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI-AWDSGDRINLW 326 (839)
T ss_pred eeEEeecceeeeeeeccCcc---------chhhhhhccccceEEEEeeccccccceeeeccCccccce-eccCCCceeeE
Confidence 11222222223789999853 222111334677899999987765554444443666666 7754 456777
Q ss_pred eec-CCcEEEEcCCCcceeee
Q 016032 329 SGS-SRSIFIWRPKEKSELVE 348 (396)
Q Consensus 329 sg~-d~~i~iw~~~~~~~~~~ 348 (396)
+++ ||+|..-..+++..-..
T Consensus 327 s~sKD~tv~qh~~knat~pid 347 (839)
T KOG0269|consen 327 SCSKDGTVLQHLFKNATTPID 347 (839)
T ss_pred eecCccHHHHhhhhcccChhh
Confidence 888 99988776666543333
No 122
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=3e-25 Score=189.28 Aligned_cols=307 Identities=17% Similarity=0.234 Sum_probs=222.4
Q ss_pred ccceeeeccccCCeEEEEecCCC--CcEEEEEeCCCcEEEeecccce------------------------eee------
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTN--NHILLSGDKKGQVGVWDFYKVS------------------------EKI------ 57 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~------------------------~~~------ 57 (396)
......+.||.+-|.+++|...+ ..+||++|.|..||||.+.-.. ...
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 45678899999999999997754 3589999999999999874322 001
Q ss_pred EecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc--ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe
Q 016032 58 VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD 135 (396)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 135 (396)
.+..||...|+++.|+|. +..|++++.|.++.+|...+.. -+....+...+ + .........|+|+++.+++-+
T Consensus 261 all~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g--g--~a~GF~g~lw~~n~~~ii~~g 335 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG--G--SAGGFWGGLWSPNSNVIIAHG 335 (764)
T ss_pred hhhcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeeccc--c--cccceeeEEEcCCCCEEEEec
Confidence 122589999999999999 8899999999999999876553 23333332221 1 112267888999999999999
Q ss_pred cCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecC-----------------------
Q 016032 136 NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR----------------------- 192 (396)
Q Consensus 136 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~----------------------- 192 (396)
..|..++|-..............+|-..|..++|+| .+.+|++.+.|.+-|+|-.-
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred ccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeee
Confidence 999999998443322222223445566799999999 88899999888887775210
Q ss_pred -------------------------------------------------------CCCC---------------------
Q 016032 193 -------------------------------------------------------RLEA--------------------- 196 (396)
Q Consensus 193 -------------------------------------------------------~~~~--------------------- 196 (396)
+.+.
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 0000
Q ss_pred ---------------------CCccccCCCCCceeEEEEcCCCCEEEEEeCC-----CcEEEEEcccccccCCCcceeec
Q 016032 197 ---------------------GSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGNLDSPSREIVHS 250 (396)
Q Consensus 197 ---------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~ 250 (396)
...-+.++|...|.+++.+|+++++|+++.. ..|++|+..+......+.
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~----- 569 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE----- 569 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-----
Confidence 0011123577889999999999999999864 359999998776543211
Q ss_pred ccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhh-h--hcCCCCCCCcceeeeccCCcEE
Q 016032 251 HDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA-E--VMDPNITTISPVNKLHPRDDVL 327 (396)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~-~--~~~~~~~~i~~~~~~~~~~~~l 327 (396)
....+..++.|+|+ |+|++ +.+.|.++.+|......... . ....|...|..+ +|+|++.++
T Consensus 570 ---~HsLTVT~l~FSpd---------g~~LL---svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc-sW~pde~~F 633 (764)
T KOG1063|consen 570 ---GHSLTVTRLAFSPD---------GRYLL---SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC-SWSPDEKYF 633 (764)
T ss_pred ---ccceEEEEEEECCC---------CcEEE---EeecCceEEeeeeecccchhhhhccccccceEEEEc-ccCccccee
Confidence 11223347999999 99999 89999999999975432211 1 123344777777 899999999
Q ss_pred Eeec-CCcEEEEcCCCc
Q 016032 328 ASGS-SRSIFIWRPKEK 343 (396)
Q Consensus 328 ~sg~-d~~i~iw~~~~~ 343 (396)
+|++ |..|+||.....
T Consensus 634 aTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEecCCceEEEEeccCc
Confidence 9999 999999998877
No 123
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.8e-25 Score=181.86 Aligned_cols=204 Identities=16% Similarity=0.241 Sum_probs=172.1
Q ss_pred ccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCC
Q 016032 17 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET 96 (396)
Q Consensus 17 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 96 (396)
++|...|.+++.++|| ++||+|+.|..|.||+..+.+.+..+ .+|.+.|.+++|-.. ...+++++.|++|++|+++.
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecC-ccceeeeecCCceEEEehhH
Confidence 4899999999999999 79999999999999999999988887 789999999999987 88999999999999999999
Q ss_pred CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCE
Q 016032 97 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 176 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 176 (396)
...+.++..++.. |.++....-.+.+-+|+.|.++++|++..... .....+.+.+-|++|- +...
T Consensus 276 ~s~vetlyGHqd~---------v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq----lifrg~~~sidcv~~I--n~~H 340 (479)
T KOG0299|consen 276 LSYVETLYGHQDG---------VLGIDALSRERCVTVGGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFI--NDEH 340 (479)
T ss_pred hHHHHHHhCCccc---------eeeechhcccceEEeccccceeEEEeccccce----eeeeCCCCCeeeEEEe--cccc
Confidence 8888877665554 88888888888888889999999999954322 2334455679999998 5788
Q ss_pred EEEeeCCCcEEEEecCCCCCCCcccc----------CCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 016032 177 LLSCGNDHFARIWDIRRLEAGSSLCD----------LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 177 l~~~~~d~~i~~wd~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 238 (396)
|++|+.+|.|.+|++.+.++...... ..++.+|++++..|...++++|+.+|.|++|-+..+
T Consensus 341 fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 341 FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 99999999999999976554222111 122348999999999999999999999999999877
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-25 Score=180.37 Aligned_cols=277 Identities=14% Similarity=0.157 Sum_probs=199.6
Q ss_pred EEEeCCC-cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC-CCeEEEEECCCCcccceeecCCCCCCCCC
Q 016032 37 LSGDKKG-QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDLETGLALSLMNVNPNGWHGPR 114 (396)
Q Consensus 37 ~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+++.|. .+.+||++++.....+..+-...-.++..-. +.+++++.. ...|.+|.+...........-+
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~--~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P------- 81 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN--NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLP------- 81 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc--hhheeeecccCccccccccCchhhhhhhcccc-------
Confidence 3344444 4999999999888887533222223333222 346666544 4579999987665544221111
Q ss_pred cceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCC
Q 016032 115 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 194 (396)
Q Consensus 115 ~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 194 (396)
..+.+++-+|.|.+++.|+..|.|++|.+.++..+... ..|=..|+++.|+. ++.+|++|+.||.|.+|.+-..
T Consensus 82 --g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 82 --GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL---SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred --cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH---HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEee
Confidence 23999999999999999999999999999999876533 44444799999999 9999999999999999987421
Q ss_pred ------CCCCccccC-CCCCceeEEEEcCC--CCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeC
Q 016032 195 ------EAGSSLCDL-PHKRVVNSAYFSPS--GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 265 (396)
Q Consensus 195 ------~~~~~~~~~-~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (396)
....++..+ .|.-+|+.+...+. ...|++++.|.++++||+..|.++. ...+.... .+++.+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl-------ti~fp~si--~av~lD 226 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL-------TITFPSSI--KAVALD 226 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE-------EEecCCcc--eeEEEc
Confidence 122334334 68889999988763 4689999999999999999987643 22222222 245556
Q ss_pred CCCCCCceeeEeeeeeeecccccccceEEEEcCccc----------------hhhhhcCCCC-CCCcceeeeccCCcEEE
Q 016032 266 PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ----------------LVAEVMDPNI-TTISPVNKLHPRDDVLA 328 (396)
Q Consensus 266 ~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~----------------~~~~~~~~~~-~~i~~~~~~~~~~~~l~ 328 (396)
|. ++.+. .|+.+|.|.+.++.... .+..+.+|.. ..|+++ +++-||.+|+
T Consensus 227 pa---------e~~~y---iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL-ais~DgtlLl 293 (476)
T KOG0646|consen 227 PA---------ERVVY---IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL-AISTDGTLLL 293 (476)
T ss_pred cc---------ccEEE---ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE-EEecCccEEE
Confidence 65 44444 68999999988765322 2333456653 488888 9999999999
Q ss_pred eec-CCcEEEEcCCCcceeeecc
Q 016032 329 SGS-SRSIFIWRPKEKSELVEQK 350 (396)
Q Consensus 329 sg~-d~~i~iw~~~~~~~~~~~~ 350 (396)
+|+ ||.++|||+.+.++++++.
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHh
Confidence 999 9999999999999888776
No 125
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=170.68 Aligned_cols=287 Identities=17% Similarity=0.186 Sum_probs=202.0
Q ss_pred cEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecC-CCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCC
Q 016032 34 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHG 112 (396)
Q Consensus 34 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 112 (396)
..+|++...|.|++||..+++.+..+ .++...++.+.|... ..+.+.+|+.||+|++||+++......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~--- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS--- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC---
Confidence 35888888999999999998888777 789999999999863 4788999999999999999998777766543332
Q ss_pred CCcceeeeEEEeCCCCCEEEEEe----cCCeEEEEeCCCCCC-CccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEE
Q 016032 113 PRTWRMLYGMDINPEKGVVLVAD----NFGFLYLVDARTNSR-SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 187 (396)
Q Consensus 113 ~~~~~~v~~~~~~~~~~~l~~~~----~~g~i~i~d~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 187 (396)
..+..+++.+..++.+++|+ .+..|.+||++..+. +... ...|...|+++.|+|.++++|++|+.||.|.
T Consensus 117 ---~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~--~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 117 ---GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQL--NESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred ---CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhh--hhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 12377888887888888885 456899999999776 3332 3345558999999999999999999999999
Q ss_pred EEecCCCCCC-CccccCCCCCceeEEEEcCCC-CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCc---eeE
Q 016032 188 IWDIRRLEAG-SSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP---FRA 262 (396)
Q Consensus 188 ~wd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 262 (396)
|||+...... ..+..+.+...|.++.|+.++ +.|.+-+...+..+|+++.+................+.... +--
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 9999754332 334445678889999999866 45778888999999999988753322221111111111100 111
Q ss_pred EeCCCCCCCceeeEeeeeeeecccccccceEEEEc---Cc---cchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcE
Q 016032 263 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI---TT---GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI 335 (396)
Q Consensus 263 ~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~---~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i 335 (396)
..+|... ...+. .|+.-+...++-+ .+ ++.+..+.+++...+..+ .|...+.++.||+ ||.+
T Consensus 272 ~~~~~~~--------~~~~l--~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i-~~~~~~~~l~TGGEDG~l 340 (376)
T KOG1188|consen 272 EHSPGDK--------DTCAL--AGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI-LFDVKNDVLYTGGEDGLL 340 (376)
T ss_pred cccCCCc--------ceEEE--eccccCceeEEEeeecccccccCccccccCCcHHHHHHH-hhhcccceeeccCCCceE
Confidence 2223221 11111 2222333444332 23 345566777776777776 7888899999999 9999
Q ss_pred EEEcC
Q 016032 336 FIWRP 340 (396)
Q Consensus 336 ~iw~~ 340 (396)
.+|..
T Consensus 341 ~~Wk~ 345 (376)
T KOG1188|consen 341 QAWKV 345 (376)
T ss_pred EEEec
Confidence 99996
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.3e-25 Score=165.39 Aligned_cols=215 Identities=19% Similarity=0.170 Sum_probs=164.9
Q ss_pred cceeeeccccCCeEEEEecC--CCCcEEEEEeCCCcEEEeecccceeeeE-ecCCcccceeEEEEecCC-CcEEEEEeCC
Q 016032 11 VNCAVIRYHSRRVTCLEFHP--TNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTN-DGTVYAASSD 86 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~l~s~~~d 86 (396)
..+..|.||.++|+.++|.. .| .+||+++.||.|.||.-.+++-... ....|...|++++|.|.. +-.|++++.|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 56789999999999999954 45 7999999999999999887642211 125799999999999975 4567889999
Q ss_pred CeEEEEECCCC-cc--cceeecCCCCCCCCCcceeeeEEEeCCC---C-----------CEEEEEecCCeEEEEeCCCCC
Q 016032 87 GTVSCTDLETG-LA--LSLMNVNPNGWHGPRTWRMLYGMDINPE---K-----------GVVLVADNFGFLYLVDARTNS 149 (396)
Q Consensus 87 g~v~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~~g~i~i~d~~~~~ 149 (396)
|.|.|.+++.. .. ......++. .+++++|.|. | +.|++|+.|..|+||+.....
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~---------GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~ 196 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEI---------GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS 196 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhcccc---------ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence 99999998765 11 112222222 2889999886 4 569999999999999998874
Q ss_pred CCccceeeecCCccEEEEEeccCCC---CEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCCEEEEEe
Q 016032 150 RSGEAILIHRKGSKVVGLHCNPIQP---ELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTS 225 (396)
Q Consensus 150 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~ 225 (396)
-..+. .+..|...|+.++|.|..+ ..|++++.||++.||..+..........+ .....+..+.||+.|++|++++
T Consensus 197 w~~e~-~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 197 WKLER-TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhhhh-hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 43332 3566777999999999543 47999999999999988732221111111 3567899999999999999999
Q ss_pred CCCcEEEEEcc
Q 016032 226 QDNRLRIWDSI 236 (396)
Q Consensus 226 ~d~~i~iwd~~ 236 (396)
.|+.+.+|.-.
T Consensus 276 GdNkvtlwke~ 286 (299)
T KOG1332|consen 276 GDNKVTLWKEN 286 (299)
T ss_pred CCcEEEEEEeC
Confidence 99999999653
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=4.8e-25 Score=175.06 Aligned_cols=214 Identities=21% Similarity=0.342 Sum_probs=170.9
Q ss_pred eeccccCCeEEEEecCCC-CcEEEEEeCCCcEEEeeccc----------------ceeeeEecCCcccceeEEEEecCCC
Q 016032 15 VIRYHSRRVTCLEFHPTN-NHILLSGDKKGQVGVWDFYK----------------VSEKIVYGNIHSCIVNNIRFNPTND 77 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~ 77 (396)
..-.|.+.|+.+.-++.+ ..+.++-+..|.|.||++.. .+++..+ .+|...=+.|+|+|-..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeecccccc
Confidence 344688888888887764 34667778899999999843 1233334 68999999999999756
Q ss_pred cEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCcccee
Q 016032 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAIL 156 (396)
Q Consensus 78 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~ 156 (396)
..|++|..-+.|++|...++.- .....++.++. ..|-.++|+|. ...|++++.||.|+|||++.+.....+ .
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W----~vd~~Pf~gH~--~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~ 297 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSW----KVDQRPFTGHT--KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-S 297 (440)
T ss_pred cccccCccccceEeeeeccCce----eecCccccccc--cchhhhccCCccCceEEeeecCceEEEEEecCCCcccee-E
Confidence 7799998889999999888543 33334444433 44999999996 578899999999999999998554433 3
Q ss_pred eecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcC-CCCEEEEEeCCCcEEEEE
Q 016032 157 IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWD 234 (396)
Q Consensus 157 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd 234 (396)
...|.+.|+.|.|+. +..+|++|+.||+++|||+|+.+..+++..+ .|..+|+++.|+| +...|++++.|..|.|||
T Consensus 298 ~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 366777999999999 6669999999999999999998888777766 6999999999999 566788889999999999
Q ss_pred ccc
Q 016032 235 SIF 237 (396)
Q Consensus 235 ~~~ 237 (396)
+..
T Consensus 377 lsv 379 (440)
T KOG0302|consen 377 LSV 379 (440)
T ss_pred eec
Confidence 964
No 128
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=5.9e-25 Score=186.08 Aligned_cols=128 Identities=20% Similarity=0.318 Sum_probs=103.9
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeE-----ecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-----YGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
.+..|.+|.+.|+.+.|+|-.+.+||||+.|..|+||.+..+..... ...+..-.|.++.|+|.....|++ +..
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~ 149 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAH 149 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccC
Confidence 45678899999999999998778999999999999999985432221 213345678999999994445555 558
Q ss_pred CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCC
Q 016032 87 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNS 149 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~ 149 (396)
|++.+||+.+++.+..+..+.+. |.++.|+.||..+++++.|..|+|||.+...
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~---------vQSa~WseDG~llatscKdkqirifDPRa~~ 203 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDK---------VQSADWSEDGKLLATSCKDKQIRIFDPRASM 203 (1012)
T ss_pred ceEEEEEcccCceeecccCCchh---------hhccccccCCceEeeecCCcceEEeCCccCC
Confidence 99999999999988777655543 8999999999999999999999999998643
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.4e-23 Score=172.91 Aligned_cols=303 Identities=18% Similarity=0.286 Sum_probs=225.5
Q ss_pred CCCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeE---ecCCcccceeEEEEecCCCcE
Q 016032 3 PAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV---YGNIHSCIVNNIRFNPTNDGT 79 (396)
Q Consensus 3 p~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~ 79 (396)
-.|+-+.+......+.-.+.|....|+|.+++++++++. |.+.+|+++++..... +.+.....|.|++|.++ .-
T Consensus 183 SVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en--gd 259 (626)
T KOG2106|consen 183 SVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN--GD 259 (626)
T ss_pred chhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCC--CC
Confidence 356667777677777788899999999999888888875 7899999988654433 32334478999999996 56
Q ss_pred EEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCc-------
Q 016032 80 VYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG------- 152 (396)
Q Consensus 80 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~------- 152 (396)
+++|..+|.|.||+..+.+.......++.+ |.+++...+|.++- |+.|..|..||-...+...
T Consensus 260 viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg---------v~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGTNRISKQVHAHDGG---------VFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EEeecCCceEEEEeCCCceEEeEeeecCCc---------eEEEEEecCccEee-cCccceEEeccccccccccccCchhc
Confidence 789999999999999877766655544443 99999998888665 9999999999832211000
Q ss_pred -----------cc-------------------eeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcccc
Q 016032 153 -----------EA-------------------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD 202 (396)
Q Consensus 153 -----------~~-------------------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 202 (396)
.+ .....|......++.+| ..+.+++++.|+.+++|+- .+....
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~~-----~k~~wt 403 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWND-----HKLEWT 403 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEccC-----CceeEE
Confidence 00 01123445677889999 8899999999999999992 222222
Q ss_pred CCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeee
Q 016032 203 LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE 282 (396)
Q Consensus 203 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 282 (396)
.....++.++.|+|.| .+|.|+..|...+.|.++..++. .+.-+ .....+.|+|+ |.+++
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-------~~~d~--~~ls~v~ysp~---------G~~lA- 463 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-------IHTDN--EQLSVVRYSPD---------GAFLA- 463 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-------EEecC--CceEEEEEcCC---------CCEEE-
Confidence 3356788999999999 99999999999999998855432 11111 12236789998 99999
Q ss_pred ecccccccceEEEEcCc-cchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceee
Q 016032 283 NYNGAALHPIDFIDITT-GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELV 347 (396)
Q Consensus 283 ~~~g~~d~~i~vwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~ 347 (396)
.|+.|+.|+||-+.. |+....+..++...|+.+ .|++|+++|.+-+ |-.|..|.......+.
T Consensus 464 --vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL-DwS~Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 464 --VGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL-DWSSDSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred --EecCCCeEEEEEECCCCcEEEEeeeecCceeEEe-eecCCCceEEeccCceEEEEEccccCcccc
Confidence 899999999999864 444444444555778888 9999999999988 9999999655444433
No 130
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.5e-23 Score=172.71 Aligned_cols=308 Identities=14% Similarity=0.149 Sum_probs=213.8
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee-----------ee----------------
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-----------KI---------------- 57 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~---------------- 57 (396)
|..-.....++...|.+.|.+++...+| . |++|+.|+.|..||-.-... +.
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~G-t-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN 349 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDG-T-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN 349 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCc-c-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence 4444444445555999999999999999 4 67799999999999311000 00
Q ss_pred ------------EecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeC
Q 016032 58 ------------VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN 125 (396)
Q Consensus 58 ------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 125 (396)
....+|......++.+|. .+++++++.|+.+++|+ ..+......... +..|+.|+
T Consensus 350 ~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d----------~~~~~~fh 416 (626)
T KOG2106|consen 350 FILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN--DHKLEWTKIIED----------PAECADFH 416 (626)
T ss_pred eEEEeeecCCceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc--CCceeEEEEecC----------ceeEeecc
Confidence 011468888999999999 99999999999999999 444444433322 28899999
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCC
Q 016032 126 PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH 205 (396)
Q Consensus 126 ~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 205 (396)
|.| .++.|+..|...+.|.++.. +...+....++++++|+| ++.+||.|+.|+.|+||.+.............+
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~~~----lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTETQD----LVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred Ccc-eEEEeeccceEEEEecccce----eEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 999 99999999999999999833 334555577999999999 999999999999999999876544333322334
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCC---CCCceeeEeeeeee
Q 016032 206 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD---PSESLAVIGRYISE 282 (396)
Q Consensus 206 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~ 282 (396)
..+|+.+.||+|+++|.+-+.|-.|-.|....-....+.+.+.-. . .....-+.+.-..+. .....+....+++
T Consensus 491 gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~-t-~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA- 567 (626)
T KOG2106|consen 491 GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWA-T-YTCTLGFEVFGGSDGTDINAVARSHCEKLLA- 567 (626)
T ss_pred CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeee-e-eEEEEEEEEecccCCchHHHhhhhhhhhhhh-
Confidence 589999999999999999999999999954433332221111000 0 000000001101111 1111222356666
Q ss_pred ecccccccceEEEEcCccchh---hhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcC
Q 016032 283 NYNGAALHPIDFIDITTGQLV---AEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 340 (396)
Q Consensus 283 ~~~g~~d~~i~vwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~ 340 (396)
+|...|.|++|...--+.. .++.+|. ..+.++ +|.-+...|++.+ |..|..|++
T Consensus 568 --~gdd~g~v~lf~yPc~s~rA~~he~~ghs-~~vt~V-~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 568 --SGDDFGKVHLFSYPCSSPRAPSHEYGGHS-SHVTNV-AFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred --ccccCceEEEEccccCCCcccceeecccc-ceeEEE-EEeeCCceEEecCCCceEEEEEe
Confidence 7888999999986533322 2344444 788888 8988888888877 999999986
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=4.1e-25 Score=181.89 Aligned_cols=261 Identities=17% Similarity=0.291 Sum_probs=202.2
Q ss_pred CcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc---cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC
Q 016032 62 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG 138 (396)
Q Consensus 62 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g 138 (396)
.|..-|.++..+.. ...+++|+ .|.|+|||+..... +..+.+- ... ..+.++.+.|||+.|++|+.-.
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl-----~rd--nyiRSckL~pdgrtLivGGeas 487 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCL-----NRD--NYIRSCKLLPDGRTLIVGGEAS 487 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecC-CCeEEEeeccCCCCCCcccccccc-----Ccc--cceeeeEecCCCceEEeccccc
Confidence 48888889999887 88999988 57899999975422 1111111 111 2389999999999999999999
Q ss_pred eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCC
Q 016032 139 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 218 (396)
Q Consensus 139 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (396)
++.|||+.......+. ........+.+++.+| +.++.+++..||.|.|||+.+......+ .+|...+.||.++++|
T Consensus 488 tlsiWDLAapTprika-eltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrqf--qGhtDGascIdis~dG 563 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKA-ELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQF--QGHTDGASCIDISKDG 563 (705)
T ss_pred eeeeeeccCCCcchhh-hcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecc--cCCCCCceeEEecCCC
Confidence 9999999876543322 1222233678899999 9999999999999999999864443332 3799999999999999
Q ss_pred CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 219 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 219 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
..|.+|+.|++|+.||+++++.+. .+.|. ..++.+.+.|. +.+++ .|-..+.+.|....
T Consensus 564 tklWTGGlDntvRcWDlregrqlq-------qhdF~--SQIfSLg~cP~---------~dWla---vGMens~vevlh~s 622 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQ-------QHDFS--SQIFSLGYCPT---------GDWLA---VGMENSNVEVLHTS 622 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhh-------hhhhh--hhheecccCCC---------cccee---eecccCcEEEEecC
Confidence 999999999999999999987643 22332 22356777787 77887 67888888888764
Q ss_pred ccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEee
Q 016032 299 TGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCG 359 (396)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 359 (396)
+...+.+..|. ..|.++ .|.+.|+++++.+ |..+..|...-|..+...++.+.+..|.
T Consensus 623 -kp~kyqlhlhe-ScVLSl-KFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCD 681 (705)
T KOG0639|consen 623 -KPEKYQLHLHE-SCVLSL-KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 681 (705)
T ss_pred -Cccceeecccc-cEEEEE-EecccCceeeecCchhhhhhccCccccceeeccccCcceeee
Confidence 33444454444 677777 8999999999988 9999999999999999999988888874
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-23 Score=162.21 Aligned_cols=261 Identities=13% Similarity=0.171 Sum_probs=179.9
Q ss_pred eccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee----eeEecCCcccceeEEEEec-CCCcEEEEEeCCCeEE
Q 016032 16 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIHSCIVNNIRFNP-TNDGTVYAASSDGTVS 90 (396)
Q Consensus 16 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg~v~ 90 (396)
-.+|.+-|.|+.|.+.| +.+|+|+.|++|+|||...... .... +.|.+.|..+.|.+ .-|+.+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCcee
Confidence 35799999999999999 6799999999999999755432 2223 67999999999964 4478899999999999
Q ss_pred EEECCCC-------cccceeecCCCCCCCCCcceeeeEEEeCCC--CCEEEEEecCCeEEEEeCCCCCCCcc------ce
Q 016032 91 CTDLETG-------LALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGE------AI 155 (396)
Q Consensus 91 iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~------~~ 155 (396)
||.=... +-+..-.+. .....|+.+.|.|. |-.+++++.||.++||+......+.. +.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~-------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLV-------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred eeeecccccccccceeEEEEEee-------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 9975211 111111111 11134999999996 78899999999999998755322211 10
Q ss_pred ----eeecCCccEEEEEeccC--CCCEEEEeeCC-----CcEEEEecCCCC-CCCccccC-CCCCceeEEEEcCC----C
Q 016032 156 ----LIHRKGSKVVGLHCNPI--QPELLLSCGND-----HFARIWDIRRLE-AGSSLCDL-PHKRVVNSAYFSPS----G 218 (396)
Q Consensus 156 ----~~~~~~~~i~~~~~~~~--~~~~l~~~~~d-----~~i~~wd~~~~~-~~~~~~~~-~~~~~i~~~~~~~~----~ 218 (396)
....+..+..|+.|+|. ...+|+.|+.+ +.++||...... .-..+..+ .|..+|+.++|.|+ .
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence 11123346789999873 34678888765 478888775433 11222222 79999999999993 4
Q ss_pred CEEEEEeCCCcEEEEEccccc-------ccCCCc----ceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeeccc
Q 016032 219 SKILTTSQDNRLRIWDSIFGN-------LDSPSR----EIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNG 286 (396)
Q Consensus 219 ~~l~~~~~d~~i~iwd~~~~~-------~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 286 (396)
.+||+++.|| |+||.+.... ...+.. .+.....+..|. ...++.|+-. |..++ +.
T Consensus 240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt---------GtiLs---St 306 (361)
T KOG2445|consen 240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT---------GTILS---ST 306 (361)
T ss_pred eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee---------eeEEe---ec
Confidence 5799999999 9999998422 111111 111223344444 3456777765 88888 88
Q ss_pred ccccceEEEEcC
Q 016032 287 AALHPIDFIDIT 298 (396)
Q Consensus 287 ~~d~~i~vwd~~ 298 (396)
+.||.|++|...
T Consensus 307 GdDG~VRLWkan 318 (361)
T KOG2445|consen 307 GDDGCVRLWKAN 318 (361)
T ss_pred CCCceeeehhhh
Confidence 999999999753
No 133
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=175.36 Aligned_cols=252 Identities=20% Similarity=0.255 Sum_probs=185.5
Q ss_pred eEEEEecCC------CCcEEEEEeCCCcEEEeecccce---eeeE-----------------ecCCcccceeEEEEecCC
Q 016032 23 VTCLEFHPT------NNHILLSGDKKGQVGVWDFYKVS---EKIV-----------------YGNIHSCIVNNIRFNPTN 76 (396)
Q Consensus 23 v~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~---~~~~-----------------~~~~~~~~v~~~~~~~~~ 76 (396)
-.|++|... ..+++|.|..|..|.|||+.-.. +... ...+|+..|..++|+...
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 467777443 12699999999999999985311 0000 113699999999999887
Q ss_pred CcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCccce
Q 016032 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAI 155 (396)
Q Consensus 77 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~ 155 (396)
.+.|++||.|.+|++||+.++++...+..+... |.++.|+|. ...|++|+.|+++.+.|.+.........
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~---------Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w 326 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKK---------VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW 326 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCc---------eeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence 889999999999999999999999888755443 999999996 6889999999999999999754444332
Q ss_pred eeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcC-CCCEEEEEeCCCcEEEE
Q 016032 156 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIW 233 (396)
Q Consensus 156 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw 233 (396)
.. .+.|-.++|.|.....+++++.||+|+-+|+|+.. .++..+ .|.++|.++++++ ...+|++++.|+.+++|
T Consensus 327 k~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 327 KF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred Ee---ccceEEEEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence 22 33699999999888899999999999999999764 344333 7999999999998 55678999999999999
Q ss_pred EcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhh
Q 016032 234 DSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE 305 (396)
Q Consensus 234 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~ 305 (396)
++....... ...+.+.-.. ..+.++.|+.. +.+. .|+..+.++|||+.+...+.+
T Consensus 402 ~~~~~~~~~-----v~~~~~~~~r-l~c~~~~~~~a-------~~la----~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 402 KFDVDSPKS-----VKEHSFKLGR-LHCFALDPDVA-------FTLA----FGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred eecCCCCcc-----cccccccccc-eeecccCCCcc-------eEEE----ecCccceEEEeecccChhHHH
Confidence 997543211 1111111111 12344444421 2222 466677899999988776554
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.4e-23 Score=162.60 Aligned_cols=251 Identities=14% Similarity=0.176 Sum_probs=181.8
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
......|..+.|+|. .+.|++++.||++++|++........++.. .++.+++|.+ ...+++|+.||.|
T Consensus 10 npP~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~~~----------~plL~c~F~d-~~~~~~G~~dg~v 77 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFKHG----------APLLDCAFAD-ESTIVTGGLDGQV 77 (323)
T ss_pred CCChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhheecC----------CceeeeeccC-CceEEEeccCceE
Confidence 446778999999988 888888889999999999988665555432 3389999987 5669999999999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCE
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 220 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (396)
+.+|+.++... ....|..++.++...+ ....+++|+.|++|++||.+... ....+.....|.++.. .+..
T Consensus 78 r~~Dln~~~~~----~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~---~~~~~d~~kkVy~~~v--~g~~ 147 (323)
T KOG1036|consen 78 RRYDLNTGNED----QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKV---VVGTFDQGKKVYCMDV--SGNR 147 (323)
T ss_pred EEEEecCCcce----eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccc---cccccccCceEEEEec--cCCE
Confidence 99999986543 4456677899999998 78889999999999999998622 2223334557888776 6789
Q ss_pred EEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCcc
Q 016032 221 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 300 (396)
Q Consensus 221 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~ 300 (396)
|++|+.+..+.+||+++-......+ ...+.-.. -+++..|+. +-|+ .++-||.|.+=.+...
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~r----eS~lkyqt--R~v~~~pn~--------eGy~----~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRR----ESSLKYQT--RCVALVPNG--------EGYV----VSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhc----cccceeEE--EEEEEecCC--------CceE----EEeecceEEEEccCCc
Confidence 9999999999999998765421111 11111111 134555532 2233 3677888877555544
Q ss_pred ----chhhhhcCCC--------CCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeecccc
Q 016032 301 ----QLVAEVMDPN--------ITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 352 (396)
Q Consensus 301 ----~~~~~~~~~~--------~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~ 352 (396)
.....|..|. .-+|.++ +|||-...||||+ ||.|.+||+.+.+.+..+..-
T Consensus 210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai-~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAI-AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred hHHhhhceeEEeeecccCCceEEEEecee-EeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 2223344332 2245555 8999999999998 999999999999988887665
No 135
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=7.3e-24 Score=178.08 Aligned_cols=296 Identities=15% Similarity=0.198 Sum_probs=202.7
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
+...++||++.|.||+..|.| .+|++|+.||+|+||.+.++.++..+. ..+.|.|++|+|.....+++++.+..+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEE
Confidence 345789999999999999998 699999999999999999999999986 77899999999985545555555555666
Q ss_pred EECCCCcccce------e-ecC--CCC--------------CC-----CCCcceeeeEEEeCCCCCEEEEEecC---CeE
Q 016032 92 TDLETGLALSL------M-NVN--PNG--------------WH-----GPRTWRMLYGMDINPEKGVVLVADNF---GFL 140 (396)
Q Consensus 92 wd~~~~~~~~~------~-~~~--~~~--------------~~-----~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i 140 (396)
-+..-|..+.. + ..+ ... .. ...+...|..+.|+..|.+|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 65543321111 0 000 000 00 01233458899999999999998654 478
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCE
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 220 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (396)
.|+++....... .+....+.+.++.|+| ...+|++++. ..|++||+......+.+ +.....|.+++.+|.|..
T Consensus 549 liHQLSK~~sQ~---PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL--~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQS---PFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKL--LTGSKWISSMSIHPNGDN 621 (733)
T ss_pred EEEecccccccC---chhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHH--hcCCeeeeeeeecCCCCe
Confidence 888887654432 2333445799999999 5556666654 68999999754332222 246678999999999999
Q ss_pred EEEEeCCCcEEEEEcccccccCCCccee-ecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC-
Q 016032 221 ILTTSQDNRLRIWDSIFGNLDSPSREIV-HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT- 298 (396)
Q Consensus 221 l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~- 298 (396)
|+.|+.|+.+..||+.-... |...+. +... .-.++|++. -.+++ +|+.||++.||.-.
T Consensus 622 li~gs~d~k~~WfDldlssk--Pyk~lr~H~~a------vr~Va~H~r---------yPLfa---s~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSK--PYKTLRLHEKA------VRSVAFHKR---------YPLFA---SGSDDGTVIVFHGMV 681 (733)
T ss_pred EEEecCCCeeEEEEcccCcc--hhHHhhhhhhh------hhhhhhccc---------cceee---eecCCCcEEEEeeee
Confidence 99999999999999975421 111100 0000 013455554 23334 78999999998632
Q ss_pred -----cc---chhhhhcCCCCCC---CcceeeeccCCcEEEeec-CCcEEEE
Q 016032 299 -----TG---QLVAEVMDPNITT---ISPVNKLHPRDDVLASGS-SRSIFIW 338 (396)
Q Consensus 299 -----~~---~~~~~~~~~~~~~---i~~~~~~~~~~~~l~sg~-d~~i~iw 338 (396)
.. -.+..+.+|.... +..+ .|||...+|++++ ||+|++|
T Consensus 682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~-~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDT-IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ehhhhcCCceEeeeeccCceeecccceEee-cccCCCceEEecCCCceEEee
Confidence 11 1244566665332 3333 6999999999988 9999998
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=4.5e-24 Score=180.59 Aligned_cols=286 Identities=16% Similarity=0.232 Sum_probs=197.8
Q ss_pred EEecC--CCCcEEEEEeCCCcEEEeecccceee-----eEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 26 LEFHP--TNNHILLSGDKKGQVGVWDFYKVSEK-----IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 26 ~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
..|++ ...++|+.+.+||.|.++|....... ......|...|..+.|.|. ...|++++.|.++++||+.+.+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC-ceeEEEccCCceeeeeeeccce
Confidence 56644 44578999999999999998764322 2233679999999999995 8899999999999999999988
Q ss_pred ccce--eecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCc-------------------c---
Q 016032 99 ALSL--MNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSG-------------------E--- 153 (396)
Q Consensus 99 ~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~-------------------~--- 153 (396)
+... +..+. ..+.+++|.|.. ..|++|+.||.|.|||++...... +
T Consensus 134 l~G~~~~~GH~---------~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 134 LVGGRLNLGHT---------GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eecceeecccc---------cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 7765 32222 338899999964 678889999999999997543100 0
Q ss_pred --ceeeecCCccEEE---EEeccCCCCEEEEeeC-CCcEEEEecCCCCCCCcccc------CCC---CCceeEEEEcCCC
Q 016032 154 --AILIHRKGSKVVG---LHCNPIQPELLLSCGN-DHFARIWDIRRLEAGSSLCD------LPH---KRVVNSAYFSPSG 218 (396)
Q Consensus 154 --~~~~~~~~~~i~~---~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~------~~~---~~~i~~~~~~~~~ 218 (396)
......+...|.+ +.+.. |...||+++. |+.|++||++.......... ..| .-.+.++.....|
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred ccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 0001112223333 33444 7888888887 99999999987543221111 112 3357788888888
Q ss_pred CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCC---ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEE
Q 016032 219 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT---PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 295 (396)
Q Consensus 219 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vw 295 (396)
.+|++.+.|+.|++|++.+-... |. ..+.++.. ...-.-+|+ +.+++ +|+.|...++|
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~s-P~------~~~sg~~~~sf~vks~lSpd---------~~~l~---SgSsd~~ayiw 344 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSIS-PV------AEFSGKLNSSFYVKSELSPD---------DCSLL---SGSSDEQAYIW 344 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcC-ch------hhccCcccceeeeeeecCCC---------CceEe---ccCCCcceeee
Confidence 99988889999999999864431 11 11111111 123344555 78888 99999999999
Q ss_pred EcCccchhhhhcCCCCCCCcceeeeccC--CcEEEeec-CCcEEEEcCCCc
Q 016032 296 DITTGQLVAEVMDPNITTISPVNKLHPR--DDVLASGS-SRSIFIWRPKEK 343 (396)
Q Consensus 296 d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~sg~-d~~i~iw~~~~~ 343 (396)
.+.+.+.-..+...+...++++ +|.|. .. +++++ |..++||++..+
T Consensus 345 ~vs~~e~~~~~l~Ght~eVt~V-~w~pS~~t~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 345 VVSSPEAPPALLLGHTREVTTV-RWLPSATTP-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eecCccCChhhhhCcceEEEEE-eeccccCCC-ceeeccCcceEEEeccCc
Confidence 9988765544443344777777 77664 44 45557 999999998665
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.2e-23 Score=176.66 Aligned_cols=288 Identities=17% Similarity=0.265 Sum_probs=210.0
Q ss_pred eccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCC-cccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 16 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI-HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 16 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
+.--..+|.|+||+.+. +.||.+-.||.|-||++...........+ ....|.+++|.+ +..|++.+.+|.|.-||+
T Consensus 21 ~d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EeeeccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEec
Confidence 34456899999999988 46999999999999999987665554443 456799999995 678999999999999999
Q ss_pred CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCC
Q 016032 95 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 174 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 174 (396)
.+++....+...... |.+++.+|.+..++.|+.||.+..++...+...... .+....+.+.+++|+| ++
T Consensus 98 ~~lk~~~~~d~~gg~---------IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l~rq~sRvLslsw~~-~~ 166 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGA---------IWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-SLMRQKSRVLSLSWNP-TG 166 (691)
T ss_pred ccCceeEEecCCCcc---------eeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-ecccccceEEEEEecC-Cc
Confidence 999988777654433 999999999999999999998888887776544332 2334456899999999 89
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCccc--c--C--CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCccee
Q 016032 175 ELLLSCGNDHFARIWDIRRLEAGSSLC--D--L--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 248 (396)
Q Consensus 175 ~~l~~~~~d~~i~~wd~~~~~~~~~~~--~--~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 248 (396)
..+++|+.||.|++||..++....... . + ....-|.++.|-.++ .|++|..-|+|++||...+.+......
T Consensus 167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~-- 243 (691)
T KOG2048|consen 167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC-- 243 (691)
T ss_pred cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh--
Confidence 999999999999999998765433111 1 1 133457788877554 799999999999999998887543221
Q ss_pred ecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccch---hhhhcCCCCCCCcceeeeccCCc
Q 016032 249 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL---VAEVMDPNITTISPVNKLHPRDD 325 (396)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~ 325 (396)
... ..++++-+++ +.++. +++.|+.|.-|...+... ......++...+.++ +..++
T Consensus 244 ----h~a--dVl~Lav~~~---------~d~vf---saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~-av~~~-- 302 (691)
T KOG2048|consen 244 ----HDA--DVLALAVADN---------EDRVF---SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM-AVIEN-- 302 (691)
T ss_pred ----hhc--ceeEEEEcCC---------CCeEE---EccCCCceEEEEecCCccceeeeccccCCcccceee-eeecc--
Confidence 111 1124444444 45555 678888888888766533 222333444556655 44444
Q ss_pred EEEeec-CCcEEEEcCC
Q 016032 326 VLASGS-SRSIFIWRPK 341 (396)
Q Consensus 326 ~l~sg~-d~~i~iw~~~ 341 (396)
.|++|+ |..+.+=...
T Consensus 303 ~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSR 319 (691)
T ss_pred eEEecceeeEEEEcccc
Confidence 788888 8888775443
No 138
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1.9e-23 Score=162.89 Aligned_cols=284 Identities=15% Similarity=0.222 Sum_probs=200.3
Q ss_pred eEEEEecCCCCcEEEEEeCCCcEEEeecccc------------eeeeEecCCcccceeEEEEe-------cCCCcEEEEE
Q 016032 23 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKV------------SEKIVYGNIHSCIVNNIRFN-------PTNDGTVYAA 83 (396)
Q Consensus 23 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~v~~~~~~-------~~~~~~l~s~ 83 (396)
...+.|+||| ..|++-+.|..+++|++... .....+.-.....|...+|. |+ ..++++.
T Consensus 52 ~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVS 129 (406)
T ss_pred hccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeec
Confidence 4568999999 57888889999999998531 11111212245678888886 55 6789999
Q ss_pred eCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeC-CCCCCCcccee----ee
Q 016032 84 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA-RTNSRSGEAIL----IH 158 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~-~~~~~~~~~~~----~~ 158 (396)
+.+.-|++||.-+|+....+..-.. ........+++|+|||.+|++|.. ..|+++|+ +.+........ ..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh----~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDH----QDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cccCceeeeeccccccccchhhhhh----HHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccc
Confidence 9999999999999988776643211 111223678999999999988764 79999999 44433221111 11
Q ss_pred cCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeC-CCcEEEEEccc
Q 016032 159 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIF 237 (396)
Q Consensus 159 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~ 237 (396)
...+-+.+++|+|.+...+++|+....+-||.-....+...+ .+|.+.|+.++|.++|+.|++|.. |..|..||++.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll--ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL--GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee--cccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 224578999999988889999999888888876544432222 389999999999999999999886 77899999985
Q ss_pred ccccCCCcceeecccccccCC--ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc-cchhhhhcCCCCCCC
Q 016032 238 GNLDSPSREIVHSHDFNRHLT--PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT-GQLVAEVMDPNITTI 314 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~-~~~~~~~~~~~~~~i 314 (396)
.... ...+.++.. .-++.|+-+.. |++++ +|..+|.|++||++. |..+..+..+. ..+
T Consensus 283 ~~~p--------v~~L~rhv~~TNQRI~FDld~~-------~~~La---sG~tdG~V~vwdlk~~gn~~sv~~~~s-d~v 343 (406)
T KOG2919|consen 283 SRDP--------VYALERHVGDTNQRILFDLDPK-------GEILA---SGDTDGSVRVWDLKDLGNEVSVTGNYS-DTV 343 (406)
T ss_pred ccch--------hhhhhhhccCccceEEEecCCC-------Cceee---ccCCCccEEEEecCCCCCccccccccc-ccc
Confidence 4421 111122221 11344433321 88888 899999999999988 66555554443 777
Q ss_pred cceeeeccCCcEEEeecCCcE
Q 016032 315 SPVNKLHPRDDVLASGSSRSI 335 (396)
Q Consensus 315 ~~~~~~~~~~~~l~sg~d~~i 335 (396)
..+ +++|--.++++++...+
T Consensus 344 Ngv-slnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 344 NGV-SLNPIMPILATSSGQRI 363 (406)
T ss_pred cce-ecCcccceeeeccCcee
Confidence 788 89999999998874433
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=4.2e-23 Score=175.49 Aligned_cols=276 Identities=12% Similarity=0.104 Sum_probs=189.3
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEE-EE
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AA 83 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~ 83 (396)
|++.++..+..+.+|.. +.+++|+|++..++++++.++.|++||..+++....+. .+ ..+..++|+|+ ++.++ ++
T Consensus 16 ~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~~~~-g~~l~~~~ 91 (300)
T TIGR03866 16 IDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-SG-PDPELFALHPN-GKILYIAN 91 (300)
T ss_pred EECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-CC-CCccEEEECCC-CCEEEEEc
Confidence 56667777778876654 67899999995455778889999999999877665553 23 33577899999 66654 45
Q ss_pred eCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC-eEEEEeCCCCCCCccceeeecCCc
Q 016032 84 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-FLYLVDARTNSRSGEAILIHRKGS 162 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-~i~i~d~~~~~~~~~~~~~~~~~~ 162 (396)
+.++.|++||+.+.+.+..+.... .+.+++|+|++..++++..++ .+.+||..+....... ....
T Consensus 92 ~~~~~l~~~d~~~~~~~~~~~~~~----------~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~----~~~~ 157 (300)
T TIGR03866 92 EDDNLVTVIDIETRKVLAEIPVGV----------EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV----LVDQ 157 (300)
T ss_pred CCCCeEEEEECCCCeEEeEeeCCC----------CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE----EcCC
Confidence 568999999999877665553221 157799999999999988765 5677898775443211 1122
Q ss_pred cEEEEEeccCCCCEEE-EeeCCCcEEEEecCCCCCCCccccCC---C--CCceeEEEEcCCCCEEEEE-eCCCcEEEEEc
Q 016032 163 KVVGLHCNPIQPELLL-SCGNDHFARIWDIRRLEAGSSLCDLP---H--KRVVNSAYFSPSGSKILTT-SQDNRLRIWDS 235 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~---~--~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~ 235 (396)
....++|+| ++.+|+ ++..++.|++||+.+.+....+.... + ......++|+|++++++++ +.++.+.+||+
T Consensus 158 ~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 158 RPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 467899999 888775 44568999999998755433322110 1 1124568899999986554 45678999999
Q ss_pred ccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCc
Q 016032 236 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 315 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~ 315 (396)
++++..... . ....+..+.|+|+ |++++. +...++.|.+||+.+++++.++..+ ....
T Consensus 237 ~~~~~~~~~---~------~~~~~~~~~~~~~---------g~~l~~--~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~ 294 (300)
T TIGR03866 237 KTYEVLDYL---L------VGQRVWQLAFTPD---------EKYLLT--TNGVSNDVSVIDVAALKVIKSIKVG--RLPW 294 (300)
T ss_pred CCCcEEEEE---E------eCCCcceEEECCC---------CCEEEE--EcCCCCeEEEEECCCCcEEEEEEcc--cccc
Confidence 877653211 0 0113457889998 666651 2356889999999999988888654 3335
Q ss_pred ceeeecc
Q 016032 316 PVNKLHP 322 (396)
Q Consensus 316 ~~~~~~~ 322 (396)
.+ +++|
T Consensus 295 ~~-~~~~ 300 (300)
T TIGR03866 295 GV-VVRP 300 (300)
T ss_pred ee-EeCC
Confidence 55 4543
No 140
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=167.81 Aligned_cols=305 Identities=19% Similarity=0.274 Sum_probs=220.6
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccc------ceeeeEecCCcccceeEEEEecCCCcEEEEEe
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
.+.+-+.+|.+.|+++.|+.++ ++|++|+.|..+++|++.. .+++......|...|.|++|... ..++++|.
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~ 124 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGE 124 (609)
T ss_pred hhhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCC
Confidence 4456788999999999999997 8999999999999999864 24444454567789999999988 89999999
Q ss_pred CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 85 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
.+++|...|+++.+.+..+...... ..|+.+..+|-.+.|++.+.++.|.+||.+.......+......+...
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~-------~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNR-------GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred CcceeEeeecccceeeeeecccCcc-------cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 9999999999999888776544321 349999999999999999999999999999877555655555556678
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcccc----CC-CCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD----LP-HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
..+.|+|..+.+|++.+..+-+-+||++..+....... +. ....-.++.|+|+|..|.+--....-.+||+-+.+
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 89999998899999999999999999986443211111 11 12233678899999999887766677788887654
Q ss_pred ccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeee-eeeecccccccceEEEEcCccc-----------------
Q 016032 240 LDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY-ISENYNGAALHPIDFIDITTGQ----------------- 301 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~d~~i~vwd~~~~~----------------- 301 (396)
+.- +...+..++...... ...+++.+.+ ++ +|+.+-.|++|.+....
T Consensus 278 ~~V----~k~D~N~~GY~N~~T--------~KS~~F~~D~~v~---tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~ 342 (609)
T KOG4227|consen 278 CFV----LKSDHNPNGYCNIKT--------IKSMTFIDDYTVA---TGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPS 342 (609)
T ss_pred cee----EeccCCCCcceeeee--------eeeeeeecceeee---ccCcccceEEEecCCCccccCccccCcchhhCch
Confidence 411 000111111111000 0111222322 33 79999999999875311
Q ss_pred ------hhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCC
Q 016032 302 ------LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 302 ------~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
.+..+.+|. ..+..+ .|+|...+|++.+ ...++||...
T Consensus 343 ~~~i~~~~~VLrGHR-Sv~NQV-RF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 343 EIFIEKELTVLRGHR-SVPNQV-RFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred hheecceeEEEeccc-ccccce-eecCCcceEeccchhhheeccccc
Confidence 112234553 555666 8999999999988 9999999643
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=171.32 Aligned_cols=262 Identities=11% Similarity=0.147 Sum_probs=191.5
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCC
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 114 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 114 (396)
++++-.....+.+|.+......... .--.++|.+++-+|. +.+|+.|+..|.|++|.+.+|..+..+..+-.
T Consensus 53 llsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~-G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ------ 124 (476)
T KOG0646|consen 53 LLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALASSNL-GYFLLAGTISGNLYLWELSSGILLNVLSAHYQ------ 124 (476)
T ss_pred eeeecccCccccccccCchhhhhhh-cccccceeeeecCCC-ceEEEeecccCcEEEEEeccccHHHHHHhhcc------
Confidence 3444444567899998775544422 335678999999999 88888888999999999999999988755443
Q ss_pred cceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCC------CCCccceeeecCCccEEEEEeccC-CCCEEEEeeCCCcEE
Q 016032 115 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN------SRSGEAILIHRKGSKVVGLHCNPI-QPELLLSCGNDHFAR 187 (396)
Q Consensus 115 ~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~------~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~i~ 187 (396)
.|+++.|+.|+.+|++|+.||.|.+|++... ........++.|.-+|+.+...+. -...+++++.|.+++
T Consensus 125 ---~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 125 ---SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred ---ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 3999999999999999999999999987431 122333456778889999998872 346899999999999
Q ss_pred EEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCC--C-----cceeecccccccC---
Q 016032 188 IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP--S-----REIVHSHDFNRHL--- 257 (396)
Q Consensus 188 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~-----~~~~~~~~~~~~~--- 257 (396)
+||+..+ ..+........+++++.+|-+..+++|+.+|.|.+.++....-.+. . .+......+.++.
T Consensus 202 ~wdlS~g---~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 202 LWDLSLG---VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred EEEeccc---eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 9999654 3444445678899999999999999999999999998875432111 0 0000011111111
Q ss_pred CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCC
Q 016032 258 TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 324 (396)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (396)
...+++.+. +|..++ +|+.||.+.|||+.+.++++++... .++|+.+ .+.|--
T Consensus 279 ~ITcLais~---------DgtlLl---SGd~dg~VcvWdi~S~Q~iRtl~~~-kgpVtnL-~i~~~~ 331 (476)
T KOG0646|consen 279 AITCLAIST---------DGTLLL---SGDEDGKVCVWDIYSKQCIRTLQTS-KGPVTNL-QINPLE 331 (476)
T ss_pred ceeEEEEec---------CccEEE---eeCCCCCEEEEecchHHHHHHHhhh-cccccee-Eeeccc
Confidence 122333333 488888 9999999999999999999988743 3667766 564443
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5e-24 Score=172.79 Aligned_cols=212 Identities=18% Similarity=0.275 Sum_probs=167.9
Q ss_pred eccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECC
Q 016032 16 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 95 (396)
Q Consensus 16 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 95 (396)
-.+|+++|.+++|+..-..+||+||.|.+|++||+.++++...+ ..|+..|.++.|+|.....|++|+.|++|.+.|.+
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 45799999999999988789999999999999999999998888 57999999999999989999999999999999998
Q ss_pred CC-cccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCC
Q 016032 96 TG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 173 (396)
Q Consensus 96 ~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 173 (396)
.. ..-..++... .|-.++|.|.. ..+++++.||.++-+|+|..... ......|..+|.++++++..
T Consensus 318 ~~~~s~~~wk~~g----------~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~--vwt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 318 DPSNSGKEWKFDG----------EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP--VWTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred CccccCceEEecc----------ceEEEEecCCCceeEEEecCCceEEeeecCCCCCc--eeEEEeccCCcceEEecCCC
Confidence 42 2223333332 28889999975 56777889999999999997633 33556677799999999988
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCC-CEEEEEeCCCcEEEEEcccccc
Q 016032 174 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 174 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
+.++++++.|+.|++|++...........--.-+...|.++.|+- -.|+.|+..+.+++||+.+...
T Consensus 386 p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 386 PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 999999999999999998754432221111112335667777744 4577888888899999987654
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=166.99 Aligned_cols=217 Identities=17% Similarity=0.244 Sum_probs=165.6
Q ss_pred CccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee--EecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 9 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI--VYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 9 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
...++.++.+|.+.=+.|+|||-..-.|+||..-+.|++|...++.-.. ....+|+..|-.|+|+|.....|++|+.|
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC
Confidence 4567889999999999999999543358999888999999998854222 12256999999999999988999999999
Q ss_pred CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEE
Q 016032 87 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 166 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 166 (396)
|+|+|||++.+.....+.... +...|+.+.|+..-.+|++|+.+|.++|||+++.+.......+..|..+|++
T Consensus 280 gsIrIWDiRs~~~~~~~~~kA-------h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIts 352 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKA-------HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITS 352 (440)
T ss_pred ceEEEEEecCCCccceeEeec-------cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeE
Confidence 999999999985433332211 1123999999999889999999999999999986655444456667779999
Q ss_pred EEeccCCCCEEEEeeCCCcEEEEecCCCCC----------------CCccccCCCCCceeEEEEcCC-CCEEEEEeCCCc
Q 016032 167 LHCNPIQPELLLSCGNDHFARIWDIRRLEA----------------GSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDNR 229 (396)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~ 229 (396)
+.|+|.+...|++++.|.+|.+||+..... .+.+........+..+.|+++ ..+|++.+.||
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG- 431 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG- 431 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-
Confidence 999998888999999999999999863221 111211123456788899984 44677777777
Q ss_pred EEEE
Q 016032 230 LRIW 233 (396)
Q Consensus 230 i~iw 233 (396)
+.||
T Consensus 432 fnVf 435 (440)
T KOG0302|consen 432 FNVF 435 (440)
T ss_pred eeEE
Confidence 4444
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=5e-25 Score=188.84 Aligned_cols=208 Identities=20% Similarity=0.270 Sum_probs=177.2
Q ss_pred CCCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEE
Q 016032 3 PAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA 82 (396)
Q Consensus 3 p~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 82 (396)
+-|.+.....+..|.+|..+|.|+.|++.. .+|++|+.+|+|++||++....+..+ .+|...+..+.|+|- +.++++
T Consensus 53 ~L~~i~kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~-~~~~a~ 129 (825)
T KOG0267|consen 53 NLWAIGKPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPY-GEFFAS 129 (825)
T ss_pred ccccccCCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccc-eEEecc
Confidence 456666677777899999999999999998 79999999999999999988777766 789999999999999 999999
Q ss_pred EeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCc
Q 016032 83 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 162 (396)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 162 (396)
|+.|+.+++||++...+...+..+... +..+.|+|+|.+++.++.|..+++||+..++.... +..|..
T Consensus 130 gStdtd~~iwD~Rk~Gc~~~~~s~~~v---------v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e---f~~~e~ 197 (825)
T KOG0267|consen 130 GSTDTDLKIWDIRKKGCSHTYKSHTRV---------VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE---FKSHEG 197 (825)
T ss_pred ccccccceehhhhccCceeeecCCcce---------eEEEeecCCCceeeccCCcceeeeecccccccccc---cccccc
Confidence 999999999999988888777654332 88999999999999999999999999998876643 344566
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCC
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 228 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 228 (396)
.+..+.|+| ..-++++|+.|+++++||+++.+...... .....|.+++|+|++..+++|....
T Consensus 198 ~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~--~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 198 KVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGK--PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccccccCc-hhhhhccCCCCceeeeeccceeEEeeccC--CccCCceeeeecCCceeeecCchhh
Confidence 899999999 88899999999999999997654432222 3467899999999999999887653
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.4e-24 Score=186.07 Aligned_cols=226 Identities=20% Similarity=0.278 Sum_probs=186.5
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
.+-.|...|.|+..-..+ +.+++|+.|..+-+|.+........+ .+|..+|.++.|++. ..+|++|+.+|+|++||+
T Consensus 23 ~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~-E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTS-ERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcc-hhhhcccccCCceeeeeh
Confidence 445689999999985555 78999999999999999887777665 789999999999998 889999999999999999
Q ss_pred CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCC
Q 016032 95 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 174 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 174 (396)
+.++.++.+..+... +.++.|+|-+.+++.|+.|..+.+||++...+.. ....|...+..+.|+| +|
T Consensus 100 eeAk~vrtLtgh~~~---------~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~---~~~s~~~vv~~l~lsP-~G 166 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLN---------ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH---TYKSHTRVVDVLRLSP-DG 166 (825)
T ss_pred hhhhhhhhhhccccC---------cceeeeccceEEeccccccccceehhhhccCcee---eecCCcceeEEEeecC-CC
Confidence 999988877665543 8889999999999999999999999999765543 2233555789999999 99
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccc
Q 016032 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDF 253 (396)
Q Consensus 175 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 253 (396)
.+++.+++|..+++||...++. +..+ .|.+.+.++.|+|..-+++.|+.|+++++||+++.+.+......
T Consensus 167 r~v~~g~ed~tvki~d~~agk~---~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~------ 237 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKL---SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE------ 237 (825)
T ss_pred ceeeccCCcceeeeeccccccc---ccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc------
Confidence 9999999999999999976554 4344 48999999999999999999999999999999977664422211
Q ss_pred cccCCceeEEeCCC
Q 016032 254 NRHLTPFRAEWDPK 267 (396)
Q Consensus 254 ~~~~~~~~~~~~~~ 267 (396)
...+.+..|+|+
T Consensus 238 --~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 238 --TDGVRSLAFNPD 249 (825)
T ss_pred --cCCceeeeecCC
Confidence 122236777777
No 146
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=5.9e-23 Score=164.28 Aligned_cols=212 Identities=22% Similarity=0.321 Sum_probs=171.1
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce------eeeEecCCcccceeEEEEecCCCcEEEEEeCCCe
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT 88 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 88 (396)
.+.||+++|..++|+|.+++.+|+||.|.+|.||++..+. .....+.+|...|.-+.|+|...+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 5679999999999999998999999999999999996532 2233447899999999999998889999999999
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
|.+|++.+|+.+..+. ++ ..|+++.|+.+|.++++++.|..|++||.++++...+- ..|... .-..+.
T Consensus 156 v~iWnv~tgeali~l~-hp---------d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~-k~~Rai 223 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HP---------DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGA-KPARAI 223 (472)
T ss_pred EEEEeccCCceeeecC-CC---------CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCC-CcceeE
Confidence 9999999999887765 22 33999999999999999999999999999998877654 334333 334445
Q ss_pred eccCCCCEEEEee---CCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEE-EeCCCcEEEEEccccc
Q 016032 169 CNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT-TSQDNRLRIWDSIFGN 239 (396)
Q Consensus 169 ~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~ 239 (396)
|.. ++.++.+|. .+.++-+||..+.+..-.+..+...+.|.---|.++.++++. |-.|+.|+.|.+....
T Consensus 224 fl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 224 FLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred Eec-cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 555 677555553 367899999988777666666666777888888998888754 5569999999987654
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2e-21 Score=149.93 Aligned_cols=285 Identities=19% Similarity=0.191 Sum_probs=191.1
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc------ceee--cCCCCCCCCCcceeeeEEEeCC-CCCEE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL------SLMN--VNPNGWHGPRTWRMLYGMDINP-EKGVV 131 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l 131 (396)
..|.+.|+++...+..++++++|+.||.|.+||++..... ..-. .... ....+...|..+.|-| |...+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~--h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQ--HENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeecccc--CCccceeeeeeeEEeeecCcee
Confidence 4599999999999988999999999999999999864311 0000 1111 1122334588888988 45678
Q ss_pred EEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC--CCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCce
Q 016032 132 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI--QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVV 209 (396)
Q Consensus 132 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i 209 (396)
.+++-|.++++||..+.+.. ......+.|.+-+++|. ...++|+|..+-.|++-|+.++.....+. +|.+.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a----~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls--GHr~~v 191 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEA----VDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS--GHRDGV 191 (397)
T ss_pred ecccccceEEEeecccceee----EEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec--cccCce
Confidence 88899999999999986543 22333446888888883 24588899999999999998766644443 799999
Q ss_pred eEEEEcCCCCE-EEEEeCCCcEEEEEcccc-cccCCCc------ceeecccccccCCceeEEeCCCCCCCceeeEeeeee
Q 016032 210 NSAYFSPSGSK-ILTTSQDNRLRIWDSIFG-NLDSPSR------EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYIS 281 (396)
Q Consensus 210 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 281 (396)
.++.|+|...+ |++|+.||.|++||++.. .+..... ................++|..+ |++++
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd---------~~~l~ 262 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD---------ARYLA 262 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc---------chhhh
Confidence 99999996654 689999999999999854 1111110 0000001111111235667666 88888
Q ss_pred eecccccccceEEEEcCccchhhhhcCC---CCCCCcceeeeccCCcEEEee-cCCcEEEEcCCCcceeeeccccceEEE
Q 016032 282 ENYNGAALHPIDFIDITTGQLVAEVMDP---NITTISPVNKLHPRDDVLASG-SSRSIFIWRPKEKSELVEQKEEMKIIV 357 (396)
Q Consensus 282 ~~~~g~~d~~i~vwd~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~sg-~d~~i~iw~~~~~~~~~~~~~~~~~~~ 357 (396)
+.+.|..+++|+..+|+-...-.++ ....-..+..-+.+...++-- .++.+.++++-.++.+..++.|..-+.
T Consensus 263 ---~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~ 339 (397)
T KOG4283|consen 263 ---SCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN 339 (397)
T ss_pred ---hccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceee
Confidence 7888999999999988743322211 101111110012233333332 379999999999999999999988887
Q ss_pred eecCCCcc
Q 016032 358 CGKADKKQ 365 (396)
Q Consensus 358 ~~~~~~~~ 365 (396)
|.......
T Consensus 340 c~~~~~~f 347 (397)
T KOG4283|consen 340 CAAYRPDF 347 (397)
T ss_pred EEeecCch
Confidence 86655443
No 148
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=5.5e-22 Score=168.08 Aligned_cols=267 Identities=14% Similarity=0.130 Sum_probs=178.9
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeE-ecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
+.-...|.++|..++|.| |...|++++.|.++++||+.+...... ...+|...|.+++|.|.+...|++|+.||.|.|
T Consensus 93 lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred hcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 345567999999999999 657899999999999999998776554 236899999999999998889999999999999
Q ss_pred EECCCCcccce-------eecCCC---C--------CCCCCcceeeeE---EEeCCCCCEEEEEec-CCeEEEEeCCCCC
Q 016032 92 TDLETGLALSL-------MNVNPN---G--------WHGPRTWRMLYG---MDINPEKGVVLVADN-FGFLYLVDARTNS 149 (396)
Q Consensus 92 wd~~~~~~~~~-------~~~~~~---~--------~~~~~~~~~v~~---~~~~~~~~~l~~~~~-~g~i~i~d~~~~~ 149 (396)
||++-...-.. ...+.. . .........|.+ +.+..|...|++++. |+.|++||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 99975431110 000000 0 000011112333 445567777888776 9999999999865
Q ss_pred CCcccee-----eecC---CccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCC--CceeEEEEcCCCC
Q 016032 150 RSGEAIL-----IHRK---GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHK--RVVNSAYFSPSGS 219 (396)
Q Consensus 150 ~~~~~~~-----~~~~---~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~ 219 (396)
....... .+.+ ...+.++.... .|.+|++.+.|+.|++|+++...........++. ..-..-..+|++.
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 4332211 1111 23577788777 6677776667999999999875543322222221 1122235688999
Q ss_pred EEEEEeCCCcEEEEEcccccccCCCcceeeccccccc-CCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 220 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
+|++|+.|....+|.+.+-+.-. ....++ .....+.|.|.... ..+ +++.|..+++|++.
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~--------~~l~Ght~eVt~V~w~pS~~t-------~v~----TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPP--------ALLLGHTREVTTVRWLPSATT-------PVA----TCSDDFRVKIWRLS 391 (720)
T ss_pred eEeccCCCcceeeeeecCccCCh--------hhhhCcceEEEEEeeccccCC-------Cce----eeccCcceEEEecc
Confidence 99999999999999998765421 111111 12246788876432 222 45899999999986
Q ss_pred cc
Q 016032 299 TG 300 (396)
Q Consensus 299 ~~ 300 (396)
.+
T Consensus 392 ~~ 393 (720)
T KOG0321|consen 392 NG 393 (720)
T ss_pred Cc
Confidence 54
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=2.9e-22 Score=156.64 Aligned_cols=302 Identities=14% Similarity=0.218 Sum_probs=211.2
Q ss_pred eeeccccCCeEEEEecC----CCCcEEEEEeCCCcEEEeecccce---eeeEec-CCcccceeEEEEecC---CCcEEEE
Q 016032 14 AVIRYHSRRVTCLEFHP----TNNHILLSGDKKGQVGVWDFYKVS---EKIVYG-NIHSCIVNNIRFNPT---NDGTVYA 82 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~-~~~~~~v~~~~~~~~---~~~~l~s 82 (396)
+....|..+|..++|++ +....+|+.+. ..+.||...... ...... ..|......++|+-+ +..++++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34567899999999985 33467787775 478899887543 222222 347788888998754 2457899
Q ss_pred EeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeeecCC
Q 016032 83 ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 161 (396)
Q Consensus 83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 161 (396)
++.-|.|+|.|+.+++....+..+... |+.+.+.|+. +++++++.|..|++|++++...+...--...|.
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~s---------INeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGS---------INEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCcc---------chhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence 999999999999999998888766554 8999999974 788999999999999999987765554456677
Q ss_pred ccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCC----------------------ccccC----CCCCceeEEEEc
Q 016032 162 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS----------------------SLCDL----PHKRVVNSAYFS 215 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~----------------------~~~~~----~~~~~i~~~~~~ 215 (396)
..|.++.|++ ++.+|++++.|.+|++|++...+... .+..+ -|...|-|+.|
T Consensus 182 deVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw- 259 (385)
T KOG1034|consen 182 DEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW- 259 (385)
T ss_pred CcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH-
Confidence 8999999999 99999999999999999997322100 01111 25666667777
Q ss_pred CCCCEEEEEeCCCcEEEEEcc-cccc---c-CCCcceeeccccccc---CCceeEEeCCCCCCCceeeEeeeeeeecccc
Q 016032 216 PSGSKILTTSQDNRLRIWDSI-FGNL---D-SPSREIVHSHDFNRH---LTPFRAEWDPKDPSESLAVIGRYISENYNGA 287 (396)
Q Consensus 216 ~~~~~l~~~~~d~~i~iwd~~-~~~~---~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 287 (396)
-|.++++-+.++.|..|..- -++. . .+.........+.-. +-.+..+|+|- +++++ .|.
T Consensus 260 -~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~---------~~~la---~gn 326 (385)
T KOG1034|consen 260 -FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW---------QKMLA---LGN 326 (385)
T ss_pred -HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH---------HHHHh---hcc
Confidence 36789998889999999872 1111 1 111111111111111 11134555555 66666 688
Q ss_pred cccceEEEEcCccchhh--hhcCC-CCCCCcceeeeccCCcEEEeec-CCcEEEEcCC
Q 016032 288 ALHPIDFIDITTGQLVA--EVMDP-NITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 288 ~d~~i~vwd~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
..|.|.+||+...+... ++..+ ....|... +|+.||.+|+... |++|.-||.-
T Consensus 327 q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~-sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT-SFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCcEEEEECCCCCCccCceEEeccccceeeee-eecccCcEEEEEeCCCcEEEEEee
Confidence 99999999998776532 22211 22344444 8999999998877 9999999853
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=167.45 Aligned_cols=252 Identities=16% Similarity=0.213 Sum_probs=188.2
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccc-eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 141 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 141 (396)
...+|.+++|+.. .+.||.+-.+|.|-+|++..+-... .+..+.+ ..|.+++|+ ++..|++.+.+|.|.
T Consensus 24 ~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~d--------rsIE~L~W~-e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 24 KPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPED--------RSIESLAWA-EGGRLFSSGLSGSIT 93 (691)
T ss_pred eccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCC--------CceeeEEEc-cCCeEEeecCCceEE
Confidence 4578999999998 8889999999999999998764333 3333333 339999999 555688888999999
Q ss_pred EEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEE
Q 016032 142 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 221 (396)
Q Consensus 142 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 221 (396)
-||+.+.++.. .....++.|.+++.+| .+..++.|++||.++.++................+.|.+++|+|++..|
T Consensus 94 EwDl~~lk~~~---~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 94 EWDLHTLKQKY---NIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred EEecccCceeE---EecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 99999976543 3455566899999999 8899999999998888887543332222112356889999999999999
Q ss_pred EEEeCCCcEEEEEcccccccCCCcceeecccccccCC-ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCcc
Q 016032 222 LTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 300 (396)
Q Consensus 222 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~ 300 (396)
++|+.||.|++||...+.... +......+-.. .-.+.|+-. +.-++..+ +|...|.|.+||...|
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~-----~~~~~~d~l~k~~~~iVWSv~-----~Lrd~tI~----sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLH-----IITMQLDRLSKREPTIVWSVL-----FLRDSTIA----SGDSAGTVTFWDSIFG 235 (691)
T ss_pred EecccCceEEEEEcCCCceEE-----EeeecccccccCCceEEEEEE-----EeecCcEE----EecCCceEEEEcccCc
Confidence 999999999999998876533 11111111111 114555431 11123333 5888899999999999
Q ss_pred chhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcc
Q 016032 301 QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 344 (396)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~ 344 (396)
.+++.+..|. ..+.++ +..+++.++++++ |+.|..+...+..
T Consensus 236 TLiqS~~~h~-adVl~L-av~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 236 TLIQSHSCHD-ADVLAL-AVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred chhhhhhhhh-cceeEE-EEcCCCCeEEEccCCCceEEEEecCCc
Confidence 9999998887 778888 8899999999988 9999988877663
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1e-21 Score=152.85 Aligned_cols=252 Identities=14% Similarity=0.116 Sum_probs=179.9
Q ss_pred eeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCC
Q 016032 67 VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 146 (396)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~ 146 (396)
..|+.|++. |.+|++|+.||.|.|||+.+......+..+-.+ |.+++|+++|+.|++++.|..|.+||+.
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p---------i~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP---------ITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccc---------eeEEEecCCCCEeeeecCCceeEEEecc
Confidence 789999999 999999999999999999998877666544433 9999999999999999999999999999
Q ss_pred CCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC---CCCCceeEEEEcCCCCEEEE
Q 016032 147 TNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSPSGSKILT 223 (396)
Q Consensus 147 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~ 223 (396)
.+....+ ....++|....|+|.+.+.+++.-.+..-.+-++.... ...+..- ..+....+..|.+.|+++++
T Consensus 96 ~gs~l~r----irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 96 KGSPLKR----IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred CCCceeE----EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEE
Confidence 9875533 23345899999999766766666555555666654311 1112111 11122334468999999999
Q ss_pred EeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc----
Q 016032 224 TSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT---- 299 (396)
Q Consensus 224 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~---- 299 (396)
|...|.+.++|..+-+++...+... ....-.+.++- .|++++ ..+.|..|+.|++..
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits-------~~~IK~I~~s~---------~g~~li---iNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITS-------VQAIKQIIVSR---------KGRFLI---INTSDRVIRTYEISDIDDE 231 (405)
T ss_pred ecCcceEEEEecchheeeeeeeech-------heeeeEEEEec---------cCcEEE---EecCCceEEEEehhhhccc
Confidence 9999999999999887654332211 01111233333 377777 678999999999862
Q ss_pred ---c--chhhhhcCC-CCCCCcceeeeccCCcEEEeec--CCcEEEEcCCCcceeeeccccc
Q 016032 300 ---G--QLVAEVMDP-NITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQKEEM 353 (396)
Q Consensus 300 ---~--~~~~~~~~~-~~~~i~~~~~~~~~~~~l~sg~--d~~i~iw~~~~~~~~~~~~~~~ 353 (396)
+ ++.++++.- +......+ +|+.+|.|++.|+ -..++||.-..|.+++.+.+..
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~c-cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKC-CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhhe-eecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 1 112222211 11233344 7999999999988 5889999999999999888766
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.4e-21 Score=150.21 Aligned_cols=272 Identities=14% Similarity=0.177 Sum_probs=181.7
Q ss_pred cCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccc--eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-
Q 016032 60 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS--LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN- 136 (396)
Q Consensus 60 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 136 (396)
+++|...|++++|+.+ +..|++++.|++|++|+++.-.... .+...-. . .-.+.+.|.||.+.+++...
T Consensus 82 LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~-----dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--Y-----DHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred hhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhcccc--C-----CCceEEEECCCcceEEEEEcc
Confidence 3789999999999999 9999999999999999998643211 1111100 1 12678899999877666554
Q ss_pred CCeEEEEeCCCCCC---Ccccee------eecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCC
Q 016032 137 FGFLYLVDARTNSR---SGEAIL------IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHK 206 (396)
Q Consensus 137 ~g~i~i~d~~~~~~---~~~~~~------~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~ 206 (396)
...+++|-+...+. ...... ...|...+..+-... ++.+|++++.|..|.+|+++ ++.+... ...
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk----Gq~L~~idtnq 228 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK----GQLLQSIDTNQ 228 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC----Cceeeeecccc
Confidence 45799997754221 111111 112334566666665 78899999999999999997 3344433 233
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecc
Q 016032 207 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYN 285 (396)
Q Consensus 207 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~ 285 (396)
..-+..+.||+|+++++++....|++|.+--++- ....+......+.+|... ...+|+++ .+.++ +
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-G~fqev~rvf~LkGH~saV~~~aFsn~---------S~r~v---t 295 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-GTFQEVKRVFSLKGHQSAVLAAAFSNS---------STRAV---T 295 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccC-cchhhhhhhheeccchhheeeeeeCCC---------cceeE---E
Confidence 4456678999999999999999999999864332 122333334455566554 46788887 34444 5
Q ss_pred cccccceEEEEcCcc-------chhhhhc---CCCCCCCcceeeeccCCcEEEeecCCcEEEEcCCCcceeeecc-ccce
Q 016032 286 GAALHPIDFIDITTG-------QLVAEVM---DPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQK-EEMK 354 (396)
Q Consensus 286 g~~d~~i~vwd~~~~-------~~~~~~~---~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~~~~~~~~~~~-~~~~ 354 (396)
.+.||+++|||+.-. +.+.+.. ......-..+ +.+|+|..||.+....|.++..++|+....++ .|+.
T Consensus 296 vSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL-~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~ 374 (420)
T KOG2096|consen 296 VSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL-ELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHST 374 (420)
T ss_pred EecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEE-EeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcC
Confidence 789999999998522 2222221 1112233355 89999999999887889999999988766653 3444
Q ss_pred EEEe
Q 016032 355 IIVC 358 (396)
Q Consensus 355 ~~~~ 358 (396)
-+.|
T Consensus 375 ~Is~ 378 (420)
T KOG2096|consen 375 TISS 378 (420)
T ss_pred ceee
Confidence 4444
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=3.2e-21 Score=164.99 Aligned_cols=303 Identities=17% Similarity=0.226 Sum_probs=197.9
Q ss_pred cceeeeccccCCeEEEEecCCCC--cEEEEEeCCCcEEEeecccce--eeeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNN--HILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
.....+.||..+|+|+.|-|+.. .++++|+.|+.|.+|.++... ++..+ ++|...+.|+ ... ...+.+.+.|
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~-~g~~~~~~cv--~a~-~~~~~~~~ad 120 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI-QGHCKECVCV--VAR-SSVMTCKAAD 120 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee-cCcceeEEEE--Eee-eeEEEeeccC
Confidence 35678999999999999998862 269999999999999998433 22333 4455555554 432 2333334689
Q ss_pred CeEEEEECCCCc--ccceeecCCCCCCCCCcceeeeEEEeCCC-CCE-EEEEecCCeEEEEeCCCCCCCccceeeecCCc
Q 016032 87 GTVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGV-VLVADNFGFLYLVDARTNSRSGEAILIHRKGS 162 (396)
Q Consensus 87 g~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~-l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 162 (396)
+++.+||.+..+ +...+...... ....|+++.++ +.+ ++.|+.+..|.++.-... .........+|..
T Consensus 121 ~~v~vw~~~~~e~~~~~~~rf~~k~-------~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-~f~~v~el~GH~D 192 (764)
T KOG1063|consen 121 GTVSVWDKQQDEVFLLAVLRFEIKE-------AIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-SFARVAELEGHTD 192 (764)
T ss_pred ceEEEeecCCCceeeehheehhhhh-------HhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-ceeEEEEeeccch
Confidence 999999995554 22222221111 12456666663 333 445566667777776633 3334445677888
Q ss_pred cEEEEEeccCC--CCEEEEeeCCCcEEEEecCCCCC---------------------CCccc--------cCCCCCceeE
Q 016032 163 KVVGLHCNPIQ--PELLLSCGNDHFARIWDIRRLEA---------------------GSSLC--------DLPHKRVVNS 211 (396)
Q Consensus 163 ~i~~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~---------------------~~~~~--------~~~~~~~i~~ 211 (396)
.|.+++|.... ..++++++.|..||||.+.-... ...+. ..+|...|++
T Consensus 193 WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~s 272 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYS 272 (764)
T ss_pred hhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEE
Confidence 99999998633 34889999999999998753220 00011 1279999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccccccc-CCceeEEeCCCCCCCceeeEeeeeeeeccccccc
Q 016032 212 AYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH-LTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 290 (396)
Q Consensus 212 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~ 290 (396)
+.|+|.+..|++++.|.++.+|...+..-+- ..........+. ...+.+.|+|+. ..+. +-+.-|
T Consensus 273 v~W~p~~~~LLSASaDksmiiW~pd~~tGiW--v~~vRlGe~gg~a~GF~g~lw~~n~---------~~ii---~~g~~G 338 (764)
T KOG1063|consen 273 VWWHPEGLDLLSASADKSMIIWKPDENTGIW--VDVVRLGEVGGSAGGFWGGLWSPNS---------NVII---AHGRTG 338 (764)
T ss_pred EEEccchhhheecccCcceEEEecCCccceE--EEEEEeecccccccceeeEEEcCCC---------CEEE---EecccC
Confidence 9999999999999999999999876432111 111111122211 123678999983 3333 334455
Q ss_pred ceEEEEcCccc---hhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCC
Q 016032 291 PIDFIDITTGQ---LVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 291 ~i~vwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
-.++|-..... ....+ ..|...+..+ +|+|.|.+|.+.+ |.+-|++-.-
T Consensus 339 g~hlWkt~d~~~w~~~~~i-SGH~~~V~dv-~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVI-SGHVDGVKDV-DWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred cEEEEeccCccceeecccc-ccccccceee-eecCCCCEEEEeccccceeeeccc
Confidence 69999843321 22223 3445889999 9999999999999 9999998654
No 154
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.3e-21 Score=167.41 Aligned_cols=259 Identities=19% Similarity=0.243 Sum_probs=188.8
Q ss_pred ecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeE-EEeCC-CCCEEEEEec
Q 016032 59 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG-MDINP-EKGVVLVADN 136 (396)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~ 136 (396)
...+|...|..+++.+ +..+++++.||++++|+-...+.+..... .++..+ +.. +++.+ ++..+++|+.
T Consensus 9 ~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~-----~~~~g~--i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAF-----EGPKGF--IANSICYAESDKGRLVVGGM 79 (745)
T ss_pred EeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceec-----ccCcce--eeccceeccccCcceEeecc
Confidence 3478999999999886 46899999999999999876665543221 122222 333 66664 5566999999
Q ss_pred CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC
Q 016032 137 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 216 (396)
Q Consensus 137 ~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (396)
|..|.+|.+.+..+.. ...+|...|++++... ++. +++||.|.++++|-... .... ..+|+..|.++++-|
T Consensus 80 D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~--l~~~--l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGE--LVYS--LQGHTASVWAVASLP 150 (745)
T ss_pred cceEEEEecCCCCchh---hhhccccceeeeecCC-cCc-eEecccccceEEecchh--hhcc--cCCcchheeeeeecC
Confidence 9999999998876654 3456666899998775 555 99999999999998753 2222 348999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCcee-EEeCCCCCCCceeeEeeeeeeecccccccceEEE
Q 016032 217 SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFR-AEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 295 (396)
Q Consensus 217 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vw 295 (396)
++ .+++|+.|.+|++|.- ++.+ ..+.+|...++ ++.-++ +.++ +++.||.|++|
T Consensus 151 e~-~~vTgsaDKtIklWk~--~~~l---------~tf~gHtD~VRgL~vl~~---------~~fl----ScsNDg~Ir~w 205 (745)
T KOG0301|consen 151 EN-TYVTGSADKTIKLWKG--GTLL---------KTFSGHTDCVRGLAVLDD---------SHFL----SCSNDGSIRLW 205 (745)
T ss_pred CC-cEEeccCcceeeeccC--Cchh---------hhhccchhheeeeEEecC---------CCeE----eecCCceEEEE
Confidence 88 8899999999999986 3332 23444444332 222222 3344 57899999999
Q ss_pred EcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccce-----------EEEeecCCC
Q 016032 296 DITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK-----------IIVCGKADK 363 (396)
Q Consensus 296 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 363 (396)
++ +|+++.++.+|. .-++++ +..+++..+++++ |++++||+.. ++.+.+..+.. .++|+++|.
T Consensus 206 ~~-~ge~l~~~~ght-n~vYsi-s~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG 280 (745)
T KOG0301|consen 206 DL-DGEVLLEMHGHT-NFVYSI-SMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDG 280 (745)
T ss_pred ec-cCceeeeeeccc-eEEEEE-EecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCc
Confidence 99 899999988887 778877 6677788888888 9999999987 55555555442 255666665
Q ss_pred cc
Q 016032 364 KQ 365 (396)
Q Consensus 364 ~~ 365 (396)
..
T Consensus 281 ~V 282 (745)
T KOG0301|consen 281 RV 282 (745)
T ss_pred eE
Confidence 44
No 155
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=4.3e-22 Score=169.92 Aligned_cols=275 Identities=14% Similarity=0.133 Sum_probs=206.9
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccc
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 101 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 101 (396)
.|..++|-|||.++++.++ ..+.+||...+.....+ ++|...|++++|+.+ +..+++|+.|..|.+|+-.-. .
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtL-KgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klE---G 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLE---G 86 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCccccccc-ccccceEEEEEEccC-CceeccCCCceeEEEeccccc---c
Confidence 7999999999977665553 47999999999888887 899999999999999 999999999999999985432 2
Q ss_pred eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee
Q 016032 102 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 181 (396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 181 (396)
.++.. +...|.||.|+|-...+++++- ...-+|........ .+.....+.+.+|.. +|++++.|-
T Consensus 87 ~LkYS--------H~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~-----K~kss~R~~~CsWtn-DGqylalG~ 151 (1081)
T KOG1538|consen 87 ILKYS--------HNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS-----KHKSSSRIICCSWTN-DGQYLALGM 151 (1081)
T ss_pred eeeec--------cCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH-----hhhhheeEEEeeecC-CCcEEEEec
Confidence 22221 1133999999999998888765 34567776653322 233445799999999 999999999
Q ss_pred CCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCC-----CCEEEEEeCCCcEEEEEcccccccCCCcceeecccccc
Q 016032 182 NDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPS-----GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 255 (396)
Q Consensus 182 ~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 255 (396)
.+|+|.+-+-.. +..-.+... +.+.+|.+++|+|. ...+++.....++.+|.+.. +.+...+ .-
T Consensus 152 ~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r--------~L 221 (1081)
T KOG1538|consen 152 FNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDR--------AL 221 (1081)
T ss_pred cCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccc--------cC
Confidence 999999986543 333333333 57789999999994 34688888888898888863 3222111 11
Q ss_pred cCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCc
Q 016032 256 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRS 334 (396)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~ 334 (396)
...|.++.+.|+ |.|+. .|+.|+.+.+|-- .|-.+.++.. ....|+.+ +.+|++++++.|. ||+
T Consensus 222 ~FdP~CisYf~N---------GEy~L---iGGsdk~L~~fTR-~GvrLGTvg~-~D~WIWtV-~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 222 NFDPCCISYFTN---------GEYIL---LGGSDKQLSLFTR-DGVRLGTVGE-QDSWIWTV-QAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred CCCchhheeccC---------CcEEE---EccCCCceEEEee-cCeEEeeccc-cceeEEEE-EEccCCceEEEEEccCe
Confidence 122346666666 89988 7999999999964 5666666654 44788888 8999999999999 999
Q ss_pred EEEEcCCCc
Q 016032 335 IFIWRPKEK 343 (396)
Q Consensus 335 i~iw~~~~~ 343 (396)
|..|++...
T Consensus 287 iACyNl~fS 295 (1081)
T KOG1538|consen 287 IACYNLIFS 295 (1081)
T ss_pred eehhhhHHh
Confidence 999987543
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=159.17 Aligned_cols=266 Identities=13% Similarity=0.193 Sum_probs=196.9
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc--cceeecCCCCCCCCCcceeeeEEEeCCCCC-EEEEEecCCe
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA--LSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGF 139 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~ 139 (396)
-.+.|+++.|+|. ...+++++.|++++||.+..... +..+.+.. .+|.+++|.|+|. .+++++....
T Consensus 212 s~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~---------fPi~~a~f~p~G~~~i~~s~rrky 281 (514)
T KOG2055|consen 212 SHGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK---------FPIQKAEFAPNGHSVIFTSGRRKY 281 (514)
T ss_pred CcCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeecc---------CccceeeecCCCceEEEecccceE
Confidence 3468999999999 99999999999999999875432 33333322 2388999999998 8889999999
Q ss_pred EEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCC
Q 016032 140 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 219 (396)
Q Consensus 140 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (396)
++.||+.+.+...-..........+..+.++| ++++|+..+..|.|.+....+++. +..+...+.|..++|+.+++
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~el---i~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKEL---ITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhh---hheeeeccEEeeEEEecCCc
Confidence 99999988654321111111122577888899 999999999999999999876554 44445678899999999999
Q ss_pred EEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc
Q 016032 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 299 (396)
Q Consensus 220 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~ 299 (396)
.|++++.+|.|.+||++...++. ...-.+.+....++-+++ |.|++ +|+..|.|.|||..+
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~-------rf~D~G~v~gts~~~S~n---------g~ylA---~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLH-------RFVDDGSVHGTSLCISLN---------GSYLA---TGSDSGIVNIYDGNS 418 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEE-------EEeecCccceeeeeecCC---------CceEE---eccCcceEEEeccch
Confidence 99999999999999998765432 222222222234444444 88999 899999999999653
Q ss_pred ------cchhhhhcCCCCCCCcceeeeccCCcEEEeec---CCcEEEEcCCCcceeeeccccce---EEEeecCCC
Q 016032 300 ------GQLVAEVMDPNITTISPVNKLHPRDDVLASGS---SRSIFIWRPKEKSELVEQKEEMK---IIVCGKADK 363 (396)
Q Consensus 300 ------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~---d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~ 363 (396)
.+++..+..-. ..|..+ .|+|+.++||.++ +..+++-.+.+......+..... .+.|..+..
T Consensus 419 ~~~s~~PkPik~~dNLt-t~Itsl-~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 419 CFASTNPKPIKTVDNLT-TAITSL-QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred hhccCCCCchhhhhhhh-eeeeee-eeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 34555554433 667777 8999999999877 68999999988877776655433 355655444
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1e-20 Score=146.86 Aligned_cols=257 Identities=15% Similarity=0.192 Sum_probs=178.1
Q ss_pred ecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc----ceeecCCCCCCCCCcceeeeEEEeCC--CCCEEE
Q 016032 59 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL----SLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVL 132 (396)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 132 (396)
+..+|..-|.++.|.+. |+.+++|+.|++|+|||.+..... ...+.+.. .|..+.|.+ -|+.++
T Consensus 8 i~s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~---------Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG---------SIWRVVWAHPEFGQVVA 77 (361)
T ss_pred cccCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC---------cEEEEEecCccccceEE
Confidence 34679999999999999 999999999999999997654432 23333322 388888854 389999
Q ss_pred EEecCCeEEEEeCCCCC--C----CccceeeecCCccEEEEEeccC-CCCEEEEeeCCCcEEEEecCCCCCCC---cccc
Q 016032 133 VADNFGFLYLVDARTNS--R----SGEAILIHRKGSKVVGLHCNPI-QPELLLSCGNDHFARIWDIRRLEAGS---SLCD 202 (396)
Q Consensus 133 ~~~~~g~i~i~d~~~~~--~----~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~---~~~~ 202 (396)
+++.|+++.||.-.... . -............|+.+.|.|. -+-.+++++.||.||||+........ ....
T Consensus 78 ~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred EEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 99999999999863211 1 1112233445568999999993 45688999999999999875432211 1111
Q ss_pred C--------CCCCceeEEEEcC---CCCEEEEEeCC-----CcEEEEEcccccccCCCcceeecccccccCCc-eeEEeC
Q 016032 203 L--------PHKRVVNSAYFSP---SGSKILTTSQD-----NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP-FRAEWD 265 (396)
Q Consensus 203 ~--------~~~~~i~~~~~~~---~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 265 (396)
+ .+..+..|+.|+| ...+||+|+.+ +.++||....+. +.......+..+..+ ..++|.
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-----rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-----RKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc-----ceeeeehhcCCCCCcceeeeec
Confidence 1 2566788999998 45678888866 478899876443 112223333344444 468999
Q ss_pred CCCCCCceeeEeeeeeeecccccccceEEEEcCccc--------------------hhhhhcCCCCCCCcceeeeccCCc
Q 016032 266 PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ--------------------LVAEVMDPNITTISPVNKLHPRDD 325 (396)
Q Consensus 266 ~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~--------------------~~~~~~~~~~~~i~~~~~~~~~~~ 325 (396)
|..+... .+++ .++.|| |+||.+.... .+..+.+|. ..+..+ .|+-.|.
T Consensus 233 Pn~Gr~y-----~~lA---vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~-~~VWrv-~wNmtGt 301 (361)
T KOG2445|consen 233 PNIGRSY-----HLLA---VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN-GEVWRV-RWNMTGT 301 (361)
T ss_pred cccCCce-----eeEE---EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC-CceEEE-EEeeeee
Confidence 9864332 3334 788999 9999987321 122233444 788888 8999999
Q ss_pred EEEeec-CCcEEEEcCC
Q 016032 326 VLASGS-SRSIFIWRPK 341 (396)
Q Consensus 326 ~l~sg~-d~~i~iw~~~ 341 (396)
.|++.+ ||.||+|...
T Consensus 302 iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeecCCCceeeehhhh
Confidence 999988 9999999864
No 158
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.4e-22 Score=163.01 Aligned_cols=311 Identities=20% Similarity=0.344 Sum_probs=228.0
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC-CcEEEEEeCCCeEE
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVS 90 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~v~ 90 (396)
....|..|.+.|..+.|+..| .+|++|+.|..|.+||.........+..+|...|..-.|.|.. ...+++++.||.|+
T Consensus 134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 446788999999999999999 5899999999999999999999988889999999999999874 45689999999999
Q ss_pred EEECCCCcccc-eeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeeecCCc---cEE
Q 016032 91 CTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS---KVV 165 (396)
Q Consensus 91 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~---~i~ 165 (396)
+=.+....... .....+. ...+.-++.-|+. ..|.+++.|+.+.-+|+++............+.. ...
T Consensus 213 ~s~i~~t~~~e~t~rl~~h-------~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~ 285 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPH-------EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY 285 (559)
T ss_pred eeeeccccceecceecccc-------cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence 88765433322 2222111 1237778888874 5688899999999999998766544432222222 577
Q ss_pred EEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCc---cccC-------CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS---LCDL-------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
.++..|.+.+.+++++.|..+++||.+....... +..+ ...-.|++++|+.++.-|+++-.|-.|++|.-
T Consensus 286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence 8999997888999999999999999986433211 1111 23456999999987777777777888999955
Q ss_pred ccccccCCCcc----eeecccccccCCc--ee--EEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhc
Q 016032 236 IFGNLDSPSRE----IVHSHDFNRHLTP--FR--AEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 307 (396)
Q Consensus 236 ~~~~~~~~~~~----~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~ 307 (396)
..+....+... .+....+.+|... +. --|-|. ..|+. +|+.-|.|.||+-.+++++.-+.
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr---------sEyVv---SGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR---------SEYVV---SGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred ccccCCCCCCCcchhhccchhhcccccccccceeeeccCc---------cceEE---ecCccceEEEEecchhHHHHHhh
Confidence 44433221111 1111112333221 11 234555 67777 89999999999999999999888
Q ss_pred CCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcc
Q 016032 308 DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 344 (396)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~ 344 (396)
+... .|.|+ .-||--.+||+++ |..|+||-..+.+
T Consensus 434 gDr~-VVNCL-EpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 434 GDRH-VVNCL-EPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cccc-eEecc-CCCCCCchhhccCCccceeeecCCccc
Confidence 8774 67776 7899999999999 9999999985544
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-22 Score=183.06 Aligned_cols=293 Identities=18% Similarity=0.272 Sum_probs=204.0
Q ss_pred EEEEecCCCCcEEEEEeC----------CCcEEEeecccceee----eEecCCcccceeEEEEecCCCc---EEEEEeCC
Q 016032 24 TCLEFHPTNNHILLSGDK----------KGQVGVWDFYKVSEK----IVYGNIHSCIVNNIRFNPTNDG---TVYAASSD 86 (396)
Q Consensus 24 ~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~---~l~s~~~d 86 (396)
-.++|+|.+..++++|.. +.++-||.+...... ..-...-....+.++|.+.+.. .|+.|..|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 357899998657777643 445566655432211 1111124567889999988433 48889999
Q ss_pred CeEEEEECCCC---cccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeeecCCc
Q 016032 87 GTVSCTDLETG---LALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGS 162 (396)
Q Consensus 87 g~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 162 (396)
|.|.+||...- .....+.. ...+...|..+.|++.. +.|++|+.+|.|.|||+...+.....- ......
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~------~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~ 162 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLAT------KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPS 162 (1049)
T ss_pred CceEEecchhhccCcchHHHhh------hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcc
Confidence 99999998762 22111110 01112339999999975 599999999999999998865544332 222345
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCC-CEEEEEeCCC---cEEEEEcccc
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG-SKILTTSQDN---RLRIWDSIFG 238 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~---~i~iwd~~~~ 238 (396)
.|.+++|+.....+|++++.+|.+.|||+|..+..-.+........+..++|+|+. ..|++++.|. .|.+||++..
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence 79999999877788999999999999999976554344333333458899999954 4566776653 6999999754
Q ss_pred cccCCCcceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcce
Q 016032 239 NLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPV 317 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~ 317 (396)
.. |.+ .+..|. ..+.+.|.+.+ .++++ +.+.|+.|.+|+.++|+.+..+.... ..+..+
T Consensus 243 ss--P~k------~~~~H~~GilslsWc~~D--------~~lll---SsgkD~~ii~wN~~tgEvl~~~p~~~-nW~fdv 302 (1049)
T KOG0307|consen 243 SS--PLK------ILEGHQRGILSLSWCPQD--------PRLLL---SSGKDNRIICWNPNTGEVLGELPAQG-NWCFDV 302 (1049)
T ss_pred CC--chh------hhcccccceeeeccCCCC--------chhhh---cccCCCCeeEecCCCceEeeecCCCC-cceeee
Confidence 32 211 122222 24688999985 35666 78899999999999999999987743 677777
Q ss_pred eeeccCCc-EEEeec-CCcEEEEcCCCcc
Q 016032 318 NKLHPRDD-VLASGS-SRSIFIWRPKEKS 344 (396)
Q Consensus 318 ~~~~~~~~-~l~sg~-d~~i~iw~~~~~~ 344 (396)
.|.|... .++.++ ||.|-|+.+..+.
T Consensus 303 -~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 -QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred -eecCCCcchhhhheeccceeeeeeecCC
Confidence 8999887 566677 9999999987665
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=8.7e-22 Score=162.23 Aligned_cols=267 Identities=14% Similarity=0.163 Sum_probs=192.1
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccce-eeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 100 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 100 (396)
.+.++.|+....-.+++.+.|..+++|.-.... .+..........-.|++.... ..++++|+..+.|+|||++...+.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc-ceeeeccCcCceeeehhhHHHHHh
Confidence 489999988763223444567789999765431 112221223334455555555 689999999999999999966555
Q ss_pred ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEe
Q 016032 101 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 180 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 180 (396)
+.++.+.. .|+++.++....+|++++..|.|.+..+.++.....+ .+..+..+.-+.++|....+|.++
T Consensus 115 r~lkdh~s---------tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f--~~~sgqsvRll~ys~skr~lL~~a 183 (673)
T KOG4378|consen 115 RFLKDHQS---------TVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF--TIDSGQSVRLLRYSPSKRFLLSIA 183 (673)
T ss_pred hhccCCcc---------eeEEEEecCCcceeEEeccCCcEEEEecccCccccce--ecCCCCeEEEeecccccceeeEee
Confidence 55544433 3999999999999999999999999999987655432 233344677999999777788899
Q ss_pred eCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCc
Q 016032 181 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTP 259 (396)
Q Consensus 181 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (396)
+++|.|.+||+....+.... ...|..+...++|+| +..+|++.+.|..|.+||+...+.... +...+.+
T Consensus 184 sd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~---l~y~~Pl------ 253 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR---LTYSHPL------ 253 (673)
T ss_pred ccCCeEEEEeccCCCcccch-hhhccCCcCcceecCCccceEEEecccceEEEeecccccccce---eeecCCc------
Confidence 99999999999764442222 126999999999999 667789999999999999986554321 1111211
Q ss_pred eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccc-hhhhhcCCCCCCCcceeeeccCC
Q 016032 260 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ-LVAEVMDPNITTISPVNKLHPRD 324 (396)
Q Consensus 260 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 324 (396)
..++|.++ |.+++ .|...|.|..||++..+ ++..+..|. ..++++ +|-|.-
T Consensus 254 stvaf~~~---------G~~L~---aG~s~G~~i~YD~R~~k~Pv~v~sah~-~sVt~v-afq~s~ 305 (673)
T KOG4378|consen 254 STVAFSEC---------GTYLC---AGNSKGELIAYDMRSTKAPVAVRSAHD-ASVTRV-AFQPSP 305 (673)
T ss_pred ceeeecCC---------ceEEE---eecCCceEEEEecccCCCCceEeeecc-cceeEE-Eeeecc
Confidence 25777777 88998 89999999999998654 444554554 778888 787654
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.3e-21 Score=158.03 Aligned_cols=266 Identities=15% Similarity=0.183 Sum_probs=185.2
Q ss_pred CCcccceeEEEEecCCC-cEEEEEeCCCeEEEEECCCCccc--ceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEec
Q 016032 61 NIHSCIVNNIRFNPTND-GTVYAASSDGTVSCTDLETGLAL--SLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADN 136 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 136 (396)
..+..+|++++|+|... .++++|..-|+|-+||+.+.+.. ..+.. ..+..+|.++.|+|. ...+++.+.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-------~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-------TPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-------ccCCccccceEecCCChhheeeecc
Confidence 45889999999999855 67888999999999999633221 11211 122234999999996 468999999
Q ss_pred CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC
Q 016032 137 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 216 (396)
Q Consensus 137 ~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (396)
||+|++-|++..... ...........+..+.++. +...++.+..=|.+.+||+|+........ .-|...|.+++++|
T Consensus 256 DGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENL-RLHKKKITSVALNP 332 (498)
T ss_pred CceeeeeeecchhhH-HHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhh-hhhhcccceeecCC
Confidence 999999999875432 2222223334677888888 55666666666799999999865522221 23777999999999
Q ss_pred -CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEE
Q 016032 217 -SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFI 295 (396)
Q Consensus 217 -~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vw 295 (396)
...+||+++.|++++|||++.-..... .++. ........-.+.|+|.+ |. ++ +.+.|..|+||
T Consensus 333 ~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~ls--t~~HrrsV~sAyFSPs~--------gt-l~---TT~~D~~IRv~ 396 (498)
T KOG4328|consen 333 VCPWFLATASLDQTAKIWDLRQLRGKAS--PFLS--TLPHRRSVNSAYFSPSG--------GT-LL---TTCQDNEIRVF 396 (498)
T ss_pred CCchheeecccCcceeeeehhhhcCCCC--ccee--cccccceeeeeEEcCCC--------Cc-eE---eeccCCceEEe
Confidence 667789999999999999986443221 0122 22222223368899986 44 33 57889999999
Q ss_pred EcC----ccchhhhhcCC-----CCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccce
Q 016032 296 DIT----TGQLVAEVMDP-----NITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 296 d~~----~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
|.. .-..+.++... +...+.+ .|.|+..++++|. -..|-|+|...++.+.++..+..
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA--~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKA--AWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhh--eeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence 983 23333333321 2223333 5999999999999 78899999999998888766655
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=3.2e-21 Score=148.34 Aligned_cols=212 Identities=19% Similarity=0.284 Sum_probs=159.8
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCC-------CcEEEeecccce---------eeeEecCCcccceeEEEEecCCC
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKK-------GQVGVWDFYKVS---------EKIVYGNIHSCIVNNIRFNPTND 77 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~ 77 (396)
..|..|.+.|+.++-+|..+++|+|+..+ ..+.||.+.... .+..+...+-+.|.|+.|.|+ +
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn-s 135 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN-S 135 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-C
Confidence 46677899999999999998899988653 247799986532 222332345568999999998 8
Q ss_pred cEEEEEeCCCeEEEEECCCCcc-cceeecCCCCCCCCCcceeeeEEEeCC--CCCEEEEEecCCeEEEEeCCCCCCCccc
Q 016032 78 GTVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEA 154 (396)
Q Consensus 78 ~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~ 154 (396)
..+++.. |..|.+|++..+.. +..+..+... ... ...++-+|+| +++.++ ...++++..||+++......+
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~--e~~--~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI 209 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESA--EMR--HSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSI 209 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccc--ccc--ceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcch
Confidence 8888776 88899999988766 3333222211 111 2267788998 455555 456799999999998777665
Q ss_pred eeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcC-CCCEEEEEeCCCcEEE
Q 016032 155 ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRI 232 (396)
Q Consensus 155 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i 232 (396)
...|.+ .+..+.|+|....+|++|+.||.|++||.|..+. +++.+ +|...|.++.|+| ..+++++|+.|..|.+
T Consensus 210 ~dAHgq--~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~L 285 (370)
T KOG1007|consen 210 EDAHGQ--RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNL 285 (370)
T ss_pred hhhhcc--eeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEecCCCceeEE
Confidence 555544 7999999997777899999999999999986443 44444 7999999999999 5667889999999999
Q ss_pred EEcc
Q 016032 233 WDSI 236 (396)
Q Consensus 233 wd~~ 236 (396)
|...
T Consensus 286 sca~ 289 (370)
T KOG1007|consen 286 SCAS 289 (370)
T ss_pred Eecc
Confidence 9775
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=5.8e-22 Score=155.01 Aligned_cols=226 Identities=15% Similarity=0.200 Sum_probs=163.8
Q ss_pred CCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEec--CCcccceeEEEEecCCCcEEEEEe
Q 016032 7 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 7 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
+....+...+.+|.+.|+.|.|+|+.+++++++|.|.+|++|++++..++..+. .+|...|.++.|+++ +.+|++++
T Consensus 122 ~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~-gd~i~ScG 200 (385)
T KOG1034|consen 122 VVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD-GDRIASCG 200 (385)
T ss_pred cchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC-CCeeeccC
Confidence 345566778999999999999999999999999999999999999999988875 579999999999999 89999999
Q ss_pred CCCeEEEEECCCCcccceeecC----CCC----CCC-----------CCcceeeeEEEeCCCCCEEEEEecCCeEEEEeC
Q 016032 85 SDGTVSCTDLETGLALSLMNVN----PNG----WHG-----------PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 145 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~----~~~----~~~-----------~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~ 145 (396)
.|.+|++|++...+....++.. +.. +.. ..+...|-|+.|- |+++++-+.++.|..|..
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP 278 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence 9999999999865433322211 000 000 0011113333332 578888888999999988
Q ss_pred CC-CCCCccc-------eeee-----cCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC--CCCCcee
Q 016032 146 RT-NSRSGEA-------ILIH-----RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVN 210 (396)
Q Consensus 146 ~~-~~~~~~~-------~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~i~ 210 (396)
.. .+..... .... .........+|.| -..+||.|...|.|++||++..++...-... .....|.
T Consensus 279 gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 279 GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR 357 (385)
T ss_pred chhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence 32 2111100 0011 1111233456677 7789999999999999999886654222111 3456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcc
Q 016032 211 SAYFSPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 211 ~~~~~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
..+|+.++.+|+..+.|++|.-||..
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999999999999864
No 164
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=1.9e-21 Score=156.23 Aligned_cols=311 Identities=14% Similarity=0.181 Sum_probs=201.8
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceee--------eEecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK--------IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
..+|.++.|.+.....||||+.|..|+||.+...... ...+..|...|+++.|+|+ ++.|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEE
Confidence 4589999999987548999999999999998753211 1123679999999999999 999999999999999
Q ss_pred EECCCCccc---ceeecCCCCC----CCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 92 TDLETGLAL---SLMNVNPNGW----HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 92 wd~~~~~~~---~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
|-...-... .......+.+ ....+...++.++|+|++.++++++.|..+++||+..+.... ....|...+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---ecccccccc
Confidence 986621110 0000000000 001122348899999999999999999999999999987653 345556689
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccc-----------------cCCC----CCceeEEEEcCCCCEEEE
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC-----------------DLPH----KRVVNSAYFSPSGSKILT 223 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----------------~~~~----~~~i~~~~~~~~~~~l~~ 223 (396)
..++|.| .++++++-+.|...+.+.+...+....+. .+-| ..-...++|+|+|.+|++
T Consensus 169 qgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 169 QGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred ceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 9999999 88999999988877777664322211111 0001 123456789999999987
Q ss_pred EeC----CCcE-----EEEEcccccccCCCcceeecccccccCCceeEEeCC-------CCCCC-ceeeEeeeeeeeccc
Q 016032 224 TSQ----DNRL-----RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP-------KDPSE-SLAVIGRYISENYNG 286 (396)
Q Consensus 224 ~~~----d~~i-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~g~~~~~~~~g 286 (396)
.+. .+.+ ++|+-. .+.+|. .+....... .+.+.++| -.... .+...-+++. .-
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk--~l~rP~---~~lp~~~k~--~lavr~~pVy~elrp~~~~~~~~~lpyrlvf---ai 317 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRK--DLKRPA---ARLPSPKKP--ALAVRFSPVYYELRPLSSEKFLFVLPYRLVF---AI 317 (434)
T ss_pred ccceeeeCCceeeceeEeeccc--cccCce---eecCCCCcc--eEEEEeeeeEEEeccccccccccccccceEE---EE
Confidence 642 2222 222221 111111 111111100 01222222 11111 1122223333 23
Q ss_pred ccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCccee
Q 016032 287 AALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSEL 346 (396)
Q Consensus 287 ~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~ 346 (396)
...+.++|||.++-.++..+..-|-..++.+ +|+++|.+|+..+ ||...+-..+..++-
T Consensus 318 At~~svyvydtq~~~P~~~v~nihy~~iTDi-aws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 318 ATKNSVYVYDTQTLEPLAVVDNIHYSAITDI-AWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eecceEEEeccccccceEEEeeeeeeeecce-eecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 4556799999999888888777677889998 9999999999999 999888777766643
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.6e-22 Score=182.38 Aligned_cols=218 Identities=21% Similarity=0.281 Sum_probs=175.6
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEec-CCcccceeEEEEecCCCcEEEEEeCCCeE
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSDGTV 89 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 89 (396)
..+.+++.|++.|..+.|++.++++||+|+.||.|.|||+.+.+...... ....+.|.+++|+....+.|++++.+|.+
T Consensus 107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 34567888999999999999987899999999999999999866655552 33567899999998867889999999999
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCC---eEEEEeCCCCCCCccceeeecCCccEE
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFG---FLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g---~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
.|||++..+.+..+...... ..+..++|+|+. ..+++++.|. .|.+||+|......+....|.. .|.
T Consensus 187 ~iWDlr~~~pii~ls~~~~~-------~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~--Gil 257 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDTPGR-------MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR--GIL 257 (1049)
T ss_pred eeccccCCCcccccccCCCc-------cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc--cee
Confidence 99999988776665443322 237899999985 5566665553 7999999987666555544544 799
Q ss_pred EEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEccccc
Q 016032 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
++.|++.+..++++++.|+.|.+|+..+++....+. ...+++..+.|+| +...+++++.||.|.||.+....
T Consensus 258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeccCCCCchhhhcccCCCCeeEecCCCceEeeecC--CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999888999999999999999998755433333 3567899999999 55588999999999999998655
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=6.2e-21 Score=144.89 Aligned_cols=297 Identities=16% Similarity=0.150 Sum_probs=199.2
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeE
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 89 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 89 (396)
+.+..+|++|.+.|+|+.|-.++ + |.+|...|.|.+|++.+......+.-.|...|+.+.-.|+ ..+.+-+.|+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~-r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L 79 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANE-R-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLL 79 (323)
T ss_pred CCCeeEeccccchheehhhccch-h-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceE
Confidence 34457888999999999999887 4 8999999999999999988777775468889999998885 688899999999
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeC-----CCCC---EEEEE-ecCC-eEEEEeCCCCCCCccc-eeee
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN-----PEKG---VVLVA-DNFG-FLYLVDARTNSRSGEA-ILIH 158 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~---~l~~~-~~~g-~i~i~d~~~~~~~~~~-~~~~ 158 (396)
.+|++.-+..+..-... ++++.|. ++++ .++.. ++.. .+++-|.......... -...
T Consensus 80 ~lw~ia~s~~i~i~Si~------------~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~ 147 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIV------------VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER 147 (323)
T ss_pred EEEEccCcceEEEeeee------------ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence 99999875443322111 2222222 2211 11111 1110 1122222111100000 0011
Q ss_pred cCCccEEEEEeccCCC--CEEEEeeCCCcEEEEecCCCCCC--------CccccCCCCCceeEEEEcCCCCEEEEEeCCC
Q 016032 159 RKGSKVVGLHCNPIQP--ELLLSCGNDHFARIWDIRRLEAG--------SSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 228 (396)
Q Consensus 159 ~~~~~i~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 228 (396)
...+.+.+..+....+ -++++|.++|.+.+||+.+.... .......|..+|.++.|.+.-..=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 1223566666543233 35677889999999999874211 1111225889999999998666677888888
Q ss_pred cEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcC
Q 016032 229 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD 308 (396)
Q Consensus 229 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~ 308 (396)
.+..|+++.....-+.+.. ...=+|.-....+..+++.++ +++.|+.|+||+.++.+.+..+..
T Consensus 228 kl~~~Sl~~s~gslq~~~e-------------~~lknpGv~gvrIRpD~KIlA---TAGWD~RiRVyswrtl~pLAVLky 291 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKE-------------ITLKNPGVSGVRIRPDGKILA---TAGWDHRIRVYSWRTLNPLAVLKY 291 (323)
T ss_pred cceeeeeccccCcccccce-------------EEecCCCccceEEccCCcEEe---ecccCCcEEEEEeccCCchhhhhh
Confidence 9999998744221111111 111223333344444588888 899999999999999999999998
Q ss_pred CCCCCCcceeeeccCCcEEEeec-CCcEEEEcC
Q 016032 309 PNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 340 (396)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~ 340 (396)
|. ..+.++ +|+|+..++|+++ |++|.+|++
T Consensus 292 Hs-agvn~v-Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 HS-AGVNAV-AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hh-cceeEE-EeCCCCchhhhccCCceEEeeec
Confidence 88 889998 9999999999999 999999986
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=4.4e-20 Score=144.34 Aligned_cols=264 Identities=18% Similarity=0.188 Sum_probs=177.0
Q ss_pred ceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccce----eecCCCCCCCCCcceeeeEEEeC-------CCCCEEEEE
Q 016032 66 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL----MNVNPNGWHGPRTWRMLYGMDIN-------PEKGVVLVA 134 (396)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~ 134 (396)
-...+.|+|+ +..|++-+.|..+++|++...-.... ................|...+|- |+..++++.
T Consensus 51 f~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 3566889999 99999999999999999864211110 00000000000111236666663 677899999
Q ss_pred ecCCeEEEEeCCCCCCCccceeeecCC---ccEEEEEeccCCCCEEEEeeCCCcEEEEec-CCCCCCCccccC-----CC
Q 016032 135 DNFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCNPIQPELLLSCGNDHFARIWDI-RRLEAGSSLCDL-----PH 205 (396)
Q Consensus 135 ~~~g~i~i~d~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~-~~~~~~~~~~~~-----~~ 205 (396)
+.+..|++||.-+++..... ....+. ....+++|+| ++..|++|. ...|++||+ |.+..-....++ +.
T Consensus 130 sr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cccCceeeeeccccccccch-hhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence 99999999999998765432 222221 2356899999 999999885 589999999 433322222222 34
Q ss_pred CCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeec
Q 016032 206 KRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENY 284 (396)
Q Consensus 206 ~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 284 (396)
.+.|.+++|+| +...+++|+....+-||.-..+..+... ... ......+.|.++ |+.+.
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll------ggh--~gGvThL~~~ed---------Gn~lf--- 266 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL------GGH--GGGVTHLQWCED---------GNKLF--- 266 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee------ccc--CCCeeeEEeccC---------cCeec---
Confidence 67899999999 6669999999999989887766543321 111 222236889888 55554
Q ss_pred ccc-cccceEEEEcCc-cchhhhhcCCCCCCCccee-eeccCCcEEEeec-CCcEEEEcCCC-cceeeeccccc
Q 016032 285 NGA-ALHPIDFIDITT-GQLVAEVMDPNITTISPVN-KLHPRDDVLASGS-SRSIFIWRPKE-KSELVEQKEEM 353 (396)
Q Consensus 285 ~g~-~d~~i~vwd~~~-~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~sg~-d~~i~iw~~~~-~~~~~~~~~~~ 353 (396)
+|+ .+-.|..||++. +.++..+..|....-..+. ...|++++|++|+ ||.|++||+++ |+.+..+..++
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred ccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 444 577899999974 5677778777643444441 4579999999998 99999999988 66454444433
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=3.7e-19 Score=152.61 Aligned_cols=282 Identities=11% Similarity=0.137 Sum_probs=173.0
Q ss_pred EEEEEeCCCcEEEeecccc-e--eeeEecCCcccceeEEEEecCCCcEEEEEe-CCCeEEEEECCC-CcccceeecCCCC
Q 016032 35 ILLSGDKKGQVGVWDFYKV-S--EKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVSCTDLET-GLALSLMNVNPNG 109 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~~~~~~~~~ 109 (396)
++++...++.|.+|++.+. . ....+ .+......++++|+ +++|++++ .++.|.+|++.. +.. ........
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~~- 78 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGAL-TFAAESPL- 78 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCce-EEeeeecC-
Confidence 4555577999999999643 2 22222 24466788999999 77776654 578899999973 322 11111110
Q ss_pred CCCCCcceeeeEEEeCCCCCEEEEEec-CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEE-EeeCCCcEE
Q 016032 110 WHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL-SCGNDHFAR 187 (396)
Q Consensus 110 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~d~~i~ 187 (396)
. .....++++|+++++++++. ++.|.+|++....................+++++| ++++++ +...++.|.
T Consensus 79 -~-----~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 79 -P-----GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIR 151 (330)
T ss_pred -C-----CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEE
Confidence 0 11567999999998888764 78999999975332222222112223467788999 777775 455679999
Q ss_pred EEecCCCCCCCc----cccCCCCCceeEEEEcCCCCEEEEEeC-CCcEEEEEccc--ccccCCCccee-ecccccccCCc
Q 016032 188 IWDIRRLEAGSS----LCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIF--GNLDSPSREIV-HSHDFNRHLTP 259 (396)
Q Consensus 188 ~wd~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~--~~~~~~~~~~~-~~~~~~~~~~~ 259 (396)
+||+.+...... ............++|+|+|++|++++. ++.|.+|++.. ++. ....... ..........+
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI-ECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE-EEEEEEecCCCcCCCCccc
Confidence 999975322110 001112344678999999999988876 89999999974 222 1111100 00111111122
Q ss_pred eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCC--CCCCcceeeeccCCcEEEeec--CCcE
Q 016032 260 FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN--ITTISPVNKLHPRDDVLASGS--SRSI 335 (396)
Q Consensus 260 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~sg~--d~~i 335 (396)
..+.++|+ |+++.. +...++.|.+|++.+.....++.++. ......+ .++|+|++|++++ +++|
T Consensus 231 ~~i~~~pd---------g~~lyv--~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~-~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 231 ADIHITPD---------GRHLYA--CDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF-NIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred eeEEECCC---------CCEEEE--ecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce-EECCCCCEEEEEEccCCcE
Confidence 35677887 666662 23457889999986433211222111 1223345 7999999999866 7999
Q ss_pred EEEcCC
Q 016032 336 FIWRPK 341 (396)
Q Consensus 336 ~iw~~~ 341 (396)
.+|+++
T Consensus 299 ~v~~~~ 304 (330)
T PRK11028 299 SVYEID 304 (330)
T ss_pred EEEEEc
Confidence 999874
No 169
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.87 E-value=5.8e-20 Score=166.91 Aligned_cols=228 Identities=16% Similarity=0.215 Sum_probs=160.7
Q ss_pred CCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce-------eeeEecCCcccceeEEEEecCCCcEE
Q 016032 8 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-------EKIVYGNIHSCIVNNIRFNPTNDGTV 80 (396)
Q Consensus 8 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l 80 (396)
+.+..++.|..|...|..++.++....+++|||.||+|++|+..... ...++ ......+.++.+.+. ++.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~-~~~~ 1113 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN-GDQF 1113 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC-CCeE
Confidence 55677899999999999999988765699999999999999987532 22222 225678899999988 8999
Q ss_pred EEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC-C-CEEEEEecCCeEEEEeCCCCCCCccceeee
Q 016032 81 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-K-GVVLVADNFGFLYLVDARTNSRSGEAILIH 158 (396)
Q Consensus 81 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~ 158 (396)
|.++.||.|++.+++........-..............+..-++... + ..++.+...+.|..||++............
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999999863211110000000000111112333344332 2 378888999999999999877665543333
Q ss_pred cCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCC---CCEEEEE-e-CCCcEEEE
Q 016032 159 RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS---GSKILTT-S-QDNRLRIW 233 (396)
Q Consensus 159 ~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~-~-~d~~i~iw 233 (396)
.| +.|++++.+| .+++++.|+..|.+.+||+|-........ .++..+|+.+..+|- ....+++ + ..+.|.+|
T Consensus 1194 ~h-G~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1194 RH-GLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cc-cceeEEEecC-CceEEEEecCCceEEEEEeecCceeeccc-CcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 34 4899999999 88999999999999999998654433333 245578888888872 2344444 3 57889999
Q ss_pred Ecccccc
Q 016032 234 DSIFGNL 240 (396)
Q Consensus 234 d~~~~~~ 240 (396)
++.+|..
T Consensus 1271 n~~~g~~ 1277 (1431)
T KOG1240|consen 1271 NMETGLR 1277 (1431)
T ss_pred ecccCcc
Confidence 9999865
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=6.9e-20 Score=164.11 Aligned_cols=303 Identities=19% Similarity=0.293 Sum_probs=201.8
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecC--CcccceeEEEEecC-CCcEEEEEeCCCeEEEEECC
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN--IHSCIVNNIRFNPT-NDGTVYAASSDGTVSCTDLE 95 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~ 95 (396)
...+-..+.|+|-.+ .++++...-.|+|||.+.++....+.. .....|+.+.+-.. ...++++|+.||.|+||+--
T Consensus 1063 n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 344567789999885 577777667899999998887666532 23456888887543 35689999999999999743
Q ss_pred CC-----cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEec
Q 016032 96 TG-----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN 170 (396)
Q Consensus 96 ~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~ 170 (396)
.. +.+.-+..-.....+.... -.-++|..+..+|++++.-..|+|||.........+.. .....++++.-+
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~--~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~--~s~t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGT--GLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY--GSSTLVTALSAD 1217 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCC--CeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc--CCCccceeeccc
Confidence 22 1111111111111111111 13356777777888888789999999988665543322 233467888776
Q ss_pred cCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCc--eeEEEEcCCCCE-EEEEeCCCcEEEEEcccccccCCCcc
Q 016032 171 PIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRV--VNSAYFSPSGSK-ILTTSQDNRLRIWDSIFGNLDSPSRE 246 (396)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~--i~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~ 246 (396)
-..++++++|..||.|++||.|.......+... .|+.. |..+.+.++|-- |++|+.+|.|++||++.........
T Consensus 1218 ~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~- 1296 (1387)
T KOG1517|consen 1218 LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT- 1296 (1387)
T ss_pred ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce-
Confidence 657899999999999999999875553333333 56666 999999986655 9999999999999999752222111
Q ss_pred eeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhh------hcCCCCCCCcceeee
Q 016032 247 IVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE------VMDPNITTISPVNKL 320 (396)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~------~~~~~~~~i~~~~~~ 320 (396)
+..........+ .+.-++. ...++ +|+. +.|+||++. |+.+.. |.+.....+.++ +|
T Consensus 1297 iv~~~~yGs~lT--al~VH~h---------apiiA---sGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL-~F 1359 (1387)
T KOG1517|consen 1297 IVAHWEYGSALT--ALTVHEH---------APIIA---SGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCL-AF 1359 (1387)
T ss_pred eeeccccCccce--eeeeccC---------CCeee---ecCc-ceEEEEecC-hhhhcccccCcccccCcCCCccee-ee
Confidence 111111111111 2222333 44555 6776 899999985 444433 345556777788 99
Q ss_pred ccCCcEEEeec-CCcEEEEcCCCcc
Q 016032 321 HPRDDVLASGS-SRSIFIWRPKEKS 344 (396)
Q Consensus 321 ~~~~~~l~sg~-d~~i~iw~~~~~~ 344 (396)
||..-+||+|+ |.+|.||.....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCcC
Confidence 99999999999 9999999887654
No 171
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.4e-21 Score=157.21 Aligned_cols=200 Identities=20% Similarity=0.281 Sum_probs=163.8
Q ss_pred EEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccccee
Q 016032 24 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 103 (396)
Q Consensus 24 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 103 (396)
.|++..... .++++|+..+.|+|||+.. +.+...+.+|...|+++.++.. ..+|++++..|.|.|..+.++.....+
T Consensus 83 ~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 83 FCVACASQS-LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred HHHhhhhcc-eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCccccce
Confidence 344444444 6899999999999999994 4455555899999999999988 999999999999999999999888777
Q ss_pred ecCCCCCCCCCcceeeeEEEeCCCCCE-EEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC
Q 016032 104 NVNPNGWHGPRTWRMLYGMDINPEKGV-VLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 182 (396)
Q Consensus 104 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 182 (396)
..+... .+.-+.|++..++ |.+++.+|.|.+||+......... ...|..+...++|+|.++.+|++.+.
T Consensus 160 ~~~sgq--------svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~ 229 (673)
T KOG4378|consen 160 TIDSGQ--------SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGY 229 (673)
T ss_pred ecCCCC--------eEEEeecccccceeeEeeccCCeEEEEeccCCCcccch--hhhccCCcCcceecCCccceEEEecc
Confidence 665432 2678999998665 556789999999999987665543 33455689999999988999999999
Q ss_pred CCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 183 DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 183 d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
|..|.+||++.......+ ....+...++|+++|.+|+.|+..|.|..||++.-+
T Consensus 230 Dkki~~yD~~s~~s~~~l---~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 230 DKKINIYDIRSQASTDRL---TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cceEEEeeccccccccee---eecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 999999999865443333 356778999999999999999999999999998654
No 172
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=1.2e-19 Score=159.03 Aligned_cols=274 Identities=20% Similarity=0.290 Sum_probs=184.4
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceee-----eEecCCcccceeEEEEecCC-Cc
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-----IVYGNIHSCIVNNIRFNPTN-DG 78 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~-~~ 78 (396)
|++.++......-.-...|+|++|+|..+.+|+.|..+|.|.+||+...... ......|..++..+.|..+. +.
T Consensus 227 W~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~ 306 (555)
T KOG1587|consen 227 WSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNT 306 (555)
T ss_pred EecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCC
Confidence 5555543333333456789999999999899999999999999999876542 22225699999999998761 23
Q ss_pred EEEEEeCCCeEEEEECCCCcc-cceeecCCCC--CCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCc--
Q 016032 79 TVYAASSDGTVSCTDLETGLA-LSLMNVNPNG--WHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSG-- 152 (396)
Q Consensus 79 ~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~--~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~-- 152 (396)
-|++++.||.|..|+++.-.. .......... .........++++.|.+. ...+++|+..|.|.--+-.......
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 489999999999998875433 1111111111 011122234888999885 5779999999998874433222211
Q ss_pred --cce-eeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEeCCC
Q 016032 153 --EAI-LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDN 228 (396)
Q Consensus 153 --~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~ 228 (396)
+.. ....|.++|.++.++|....+|++++ |.+++||...... ...+....+...+++++||| ....++++..||
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~-~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA-SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC-CcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 111 23346678999999996666677766 9999999975211 11222225667799999999 566788999999
Q ss_pred cEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 229 RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 229 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
.|.+||+.............. ......+.|++. |++++ .|...|.+.+|++.
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~~~------~~~l~~~~~s~~---------g~~la---vGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQKVC------SPALTRVRWSPN---------GKLLA---VGDANGTTHILKLS 516 (555)
T ss_pred ceehhhhhccccCCccccccc------ccccceeecCCC---------CcEEE---EecCCCcEEEEEcC
Confidence 999999986544221111111 111124667776 88888 79999999999985
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=3.6e-19 Score=156.10 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=186.3
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc--ceeecCCCCCCCCCcceeee
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL--SLMNVNPNGWHGPRTWRMLY 120 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~ 120 (396)
+.+.||++......... -.-...|.+++|+|....+++.|..+|.|.+||++.+... ..+.. ..+.+...+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~-----~~~sh~~~v~ 295 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA-----LEVSHSEPVT 295 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc-----ccccCCcCeE
Confidence 47999999887433333 2267889999999998889999999999999999987763 22222 2233344588
Q ss_pred EEEeCCCC--CEEEEEecCCeEEEEeCCCCCCCcccee----e-----ecCCccEEEEEeccCCCCEEEEeeCCCcEEEE
Q 016032 121 GMDINPEK--GVVLVADNFGFLYLVDARTNSRSGEAIL----I-----HRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 189 (396)
Q Consensus 121 ~~~~~~~~--~~l~~~~~~g~i~i~d~~~~~~~~~~~~----~-----~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~w 189 (396)
.+.|..+. .-+++++.||.|..|+++.-........ . ......+++++|.+.+.+.|+.|+++|.|.-=
T Consensus 296 ~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 296 AVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 88886654 4499999999999999876443222111 1 12234689999999999999999999999873
Q ss_pred ecCCCCCCC-----cc-ccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCC-ceeE
Q 016032 190 DIRRLEAGS-----SL-CDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLT-PFRA 262 (396)
Q Consensus 190 d~~~~~~~~-----~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 262 (396)
+-....... .. ....|.++|+++.++|=+..++..+.|-+++||....... |. ..+..... .+.+
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~--Pl------~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS--PL------LSLDSSPDYVTDV 447 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC--cc------hhhhhccceeeee
Confidence 332222211 11 2225889999999999665555555599999998762111 11 11222222 3579
Q ss_pred EeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccch--hhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEc
Q 016032 263 EWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL--VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 339 (396)
Q Consensus 263 ~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~ 339 (396)
+|+|..+...+ ++..+|.|.+||+..... +.+.... ..+.....|++.|+.|+.|. .|.+.+|+
T Consensus 448 aWSptrpavF~-----------~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 448 AWSPTRPAVFA-----------TVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCcCceEEE-----------EEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 99998653222 467899999999975443 3333222 33333337999999999999 89999999
Q ss_pred CCCc
Q 016032 340 PKEK 343 (396)
Q Consensus 340 ~~~~ 343 (396)
+...
T Consensus 515 l~~~ 518 (555)
T KOG1587|consen 515 LSES 518 (555)
T ss_pred cCch
Confidence 8543
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.6e-19 Score=135.78 Aligned_cols=208 Identities=17% Similarity=0.203 Sum_probs=150.7
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEeeccc---------ceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK---------VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
..|.+-+|+|.+ ++|+.|..+|.|.+..+.. ++......++|.++|+.++|+ ..+|++|+ ||.|+-
T Consensus 11 ~tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEE
Confidence 357777899998 7999999999999999864 233334447899999999998 45888877 699999
Q ss_pred EECCCCcc----cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEE
Q 016032 92 TDLETGLA----LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGL 167 (396)
Q Consensus 92 wd~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 167 (396)
|..+.... ...++.......+...-..|++|...|..+.++.++.|+.++-||+++++... ....|...+.++
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r---~~rGHtDYvH~v 162 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR---EYRGHTDYVHSV 162 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---EEcCCcceeeee
Confidence 98765332 11111111111111112348999999998888888899999999999987543 345666689998
Q ss_pred EeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCC--------CCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 168 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--------HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
.--. ....+++|++||++++||.++.+..+.+.... ....|.+++- +..+|++|+ ...+.+|.++..+
T Consensus 163 v~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 163 VGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred eecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCC
Confidence 8855 56679999999999999999877655554332 2345666666 455787765 5689999998766
Q ss_pred c
Q 016032 240 L 240 (396)
Q Consensus 240 ~ 240 (396)
.
T Consensus 239 ~ 239 (325)
T KOG0649|consen 239 S 239 (325)
T ss_pred c
Confidence 5
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.3e-20 Score=157.68 Aligned_cols=264 Identities=18% Similarity=0.306 Sum_probs=173.0
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc--------eeeeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV--------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
++..|.+.|+.++|+|..+ .|++++.||.+.+|+++.. +++..+ .+|.++|.|+++.++ +..+++|+.|
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n-~~~~ysgg~D 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN-GEHCYSGGID 365 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC-ceEEEeeccC
Confidence 7788999999999999985 7999999999999999331 234444 789999999999998 9999999999
Q ss_pred CeEEEEECCCCcccceee---cCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 87 GTVSCTDLETGLALSLMN---VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
|+|+.|++....-..... .-...+.++. ..+..+++++....|++++.||++++|+....... .+......+.
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght--davw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~--~f~~~~e~g~ 441 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT--DAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC--TFGEPKEHGY 441 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccc--cceeeeeecccccceeeecCCceEEeeccCCcCcc--ccCCccccCC
Confidence 999999876322111100 1111222333 33889999999999999999999999998775541 1122222224
Q ss_pred EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCC--------CCCceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 164 VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--------HKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
..++.+-.....+.++. .....+++.+.+....+..+. ....++.+.++|...+.+++
T Consensus 442 Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~----------- 507 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA----------- 507 (577)
T ss_pred cceEeeccchhHhhhhh---cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec-----------
Confidence 45565544222333332 233333333222222222211 11223344444444444444
Q ss_pred ccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCc
Q 016032 236 IFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTIS 315 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~ 315 (396)
..|+.|+++|..++.++.....|. ..++
T Consensus 508 ---------------------------------------------------hed~~Ir~~dn~~~~~l~s~~a~~-~svt 535 (577)
T KOG0642|consen 508 ---------------------------------------------------HEDRSIRFFDNKTGKILHSMVAHK-DSVT 535 (577)
T ss_pred ---------------------------------------------------ccCCceecccccccccchheeecc-ceec
Confidence 444555555555666666655554 6777
Q ss_pred ceeeeccCCcEEEeec-CCcEEEEcCCCcceeeecccc
Q 016032 316 PVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEE 352 (396)
Q Consensus 316 ~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~ 352 (396)
++ ++.|+|.+|++|+ |+.+++|.+....++.....|
T Consensus 536 sl-ai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 536 SL-AIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ce-eecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 87 8999999999999 999999999887776665444
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=2.4e-20 Score=149.50 Aligned_cols=215 Identities=22% Similarity=0.288 Sum_probs=160.6
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
.+|+++|..++|+|.+...|++||.|.+|.||.+..+.....+..
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte----------------------------------- 122 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE----------------------------------- 122 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc-----------------------------------
Confidence 689999999999999889999999999999999987654433210
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCE
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSK 220 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 220 (396)
.......|...|--++|+|.-.+.|++++.|.+|.+|++.+++. +..+.|...|.++.|+.+|.+
T Consensus 123 ------------pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---li~l~hpd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 123 ------------PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---LITLDHPDMVYSMSFNRDGSL 187 (472)
T ss_pred ------------ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce---eeecCCCCeEEEEEeccCCce
Confidence 01122334447889999998889999999999999999987554 333569999999999999999
Q ss_pred EEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCcc
Q 016032 221 ILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 300 (396)
Q Consensus 221 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~ 300 (396)
|++.+.|..|+|||.++++.+... .......+.++.|-.+ |.++..+++...+.++-+||..+-
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~e~-------~~heG~k~~Raifl~~---------g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVSEG-------VAHEGAKPARAIFLAS---------GKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred eeeecccceeEEEcCCCCcEeeec-------ccccCCCcceeEEecc---------CceeeeccccccccceeccCcccc
Confidence 999999999999999999875421 1111122235555554 666676778889999999998765
Q ss_pred chhh---hhcCCCCCCCcceeeeccCCcEEEeec--CCcEEEEcCCCcc
Q 016032 301 QLVA---EVMDPNITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKS 344 (396)
Q Consensus 301 ~~~~---~~~~~~~~~i~~~~~~~~~~~~l~sg~--d~~i~iw~~~~~~ 344 (396)
+.-. ++.... +.+.. .|.++..+|..++ |+.||.|.+.+..
T Consensus 252 ~eP~~~~elDtSn-Gvl~P--FyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 252 EEPIALQELDTSN-GVLLP--FYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCcceeEEeccCC-ceEEe--eecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4332 222222 33333 4889998888766 9999999987765
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.2e-19 Score=151.50 Aligned_cols=244 Identities=17% Similarity=0.253 Sum_probs=176.1
Q ss_pred ecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCE-EEEEecC
Q 016032 59 YGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGV-VLVADNF 137 (396)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~ 137 (396)
+..+|++.|.+|...|. +.+|++|+.||+|+||.+.+|.++..+.+... |.|++|+|.+.. ++++...
T Consensus 395 vyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~----------I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFDSE----------IRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred eEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeecce----------eEEEEecCCCCceeEEEEec
Confidence 33789999999999998 99999999999999999999999999887653 999999998642 3333333
Q ss_pred CeEEEEeCCCCCCCc----------------------------------cceeeecCCccEEEEEeccCCCCEEEEeeCC
Q 016032 138 GFLYLVDARTNSRSG----------------------------------EAILIHRKGSKVVGLHCNPIQPELLLSCGND 183 (396)
Q Consensus 138 g~i~i~d~~~~~~~~----------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 183 (396)
..+.+.+..-+..+. .....-.+...|..+.|+. .|.+|++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~ 542 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPD 542 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccC
Confidence 345555543221000 0001123445789999999 99999987654
Q ss_pred ---CcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCce
Q 016032 184 ---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF 260 (396)
Q Consensus 184 ---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (396)
..|.|+++........+. ...+.|.++.|+|...+|++++ ...|+|||+..+++...+. ....++.
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~--kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~------tg~kwiS-- 611 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFR--KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLL------TGSKWIS-- 611 (733)
T ss_pred CCcceEEEEecccccccCchh--hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHh------cCCeeee--
Confidence 478999986544433332 3567899999999999998887 4589999998766543211 1112221
Q ss_pred eEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCcc-chhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEE
Q 016032 261 RAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG-QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIW 338 (396)
Q Consensus 261 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw 338 (396)
.++.+|. |.-+. .|+.|+.+..||+.-+ +..+++..|. ..+..| +||+.-.++++|+ ||++.|+
T Consensus 612 ~msihp~---------GDnli---~gs~d~k~~WfDldlsskPyk~lr~H~-~avr~V-a~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 612 SMSIHPN---------GDNLI---LGSYDKKMCWFDLDLSSKPYKTLRLHE-KAVRSV-AFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred eeeecCC---------CCeEE---EecCCCeeEEEEcccCcchhHHhhhhh-hhhhhh-hhccccceeeeecCCCcEEEE
Confidence 3455665 44444 5899999999999755 4455555554 888888 8999999999999 8999998
Q ss_pred c
Q 016032 339 R 339 (396)
Q Consensus 339 ~ 339 (396)
.
T Consensus 678 h 678 (733)
T KOG0650|consen 678 H 678 (733)
T ss_pred e
Confidence 5
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=3.4e-21 Score=168.27 Aligned_cols=292 Identities=16% Similarity=0.217 Sum_probs=213.0
Q ss_pred CCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 7 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 7 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
++.-+.++.|.||..+|+|+.|...| +++++|+.|..++||..++..+.... .||.+.|+.++.+.+ ..++++++.|
T Consensus 177 vqkmk~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~-n~~iaaaS~D 253 (1113)
T KOG0644|consen 177 VQKMKNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN-NTMIAAASND 253 (1113)
T ss_pred HHHHHHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh-hhhhhhcccC
Confidence 33445567789999999999999999 79999999999999999998888888 899999999999988 8899999999
Q ss_pred CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCcc--ceeeecCCccE
Q 016032 87 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE--AILIHRKGSKV 164 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~--~~~~~~~~~~i 164 (396)
..|++|.+..+..+..+..+... |++++|+|-. +.+.||++++||.+-...... .... ....-+
T Consensus 254 ~vIrvWrl~~~~pvsvLrghtga---------vtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~ 319 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSVLRGHTGA---------VTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLV 319 (1113)
T ss_pred ceEEEEecCCCchHHHHhccccc---------eeeeccCccc----cCCCCCceEeccccccccccCCCCCCc-ccccce
Confidence 99999999999999988766544 9999999954 788999999999882111111 1111 122356
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCC-CCEEEEEeCCCcEEEEEcccccccCC
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDNRLRIWDSIFGNLDSP 243 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~ 243 (396)
.++.+.. ++.-+++++.|+.-..|.+..... +...+.-+.++.+ ..+.+++-.+-.+.+|++.+|.+.-
T Consensus 320 ~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H- 389 (1113)
T KOG0644|consen 320 DSILFEN-NGDRFLTGSRDGEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH- 389 (1113)
T ss_pred eeeeccc-cccccccccCCcccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhh-
Confidence 6677766 788899999999998887642111 2222222223222 2456667778889999999887632
Q ss_pred CcceeecccccccCCc-eeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeecc
Q 016032 244 SREIVHSHDFNRHLTP-FRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 322 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (396)
...++... +.+.++|-++...+ +++.||...|||+-.|..++.+.-.+...+. . .||+
T Consensus 390 --------~l~ghsd~~yvLd~Hpfn~ri~m-----------sag~dgst~iwdi~eg~pik~y~~gh~kl~d-~-kFSq 448 (1113)
T KOG0644|consen 390 --------NLMGHSDEVYVLDVHPFNPRIAM-----------SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVD-G-KFSQ 448 (1113)
T ss_pred --------hhcccccceeeeeecCCCcHhhh-----------hccCCCceEeeecccCCcceeeecccceeec-c-ccCC
Confidence 11222221 34556665432222 5688999999999999888776655534444 3 7999
Q ss_pred CCcEEEeec-CCcEEEEcCCCccee
Q 016032 323 RDDVLASGS-SRSIFIWRPKEKSEL 346 (396)
Q Consensus 323 ~~~~l~sg~-d~~i~iw~~~~~~~~ 346 (396)
+|..++... -|.++|.....++..
T Consensus 449 dgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 449 DGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCceEecCCCCCceEEeccCCCccc
Confidence 999998877 599999876555433
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=2.3e-19 Score=138.36 Aligned_cols=208 Identities=20% Similarity=0.263 Sum_probs=159.4
Q ss_pred cccCCeEEEEecCCC----CcEEEEEeCCCcEEEeecccceeeeEe--------cCCcccceeEEEEecCCCcEEEEEeC
Q 016032 18 YHSRRVTCLEFHPTN----NHILLSGDKKGQVGVWDFYKVSEKIVY--------GNIHSCIVNNIRFNPTNDGTVYAASS 85 (396)
Q Consensus 18 ~h~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~l~s~~~ 85 (396)
.|.-+++.+.|.|+. +.+|||++. .+|+|.+......... ...+..++++..|+.-..+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999985 357887753 7999999743221111 13467899999999876889999999
Q ss_pred CCeEEEEECCCCcc---cceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeeecCC
Q 016032 86 DGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKG 161 (396)
Q Consensus 86 dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 161 (396)
|-+..|||++++.. ...+-.+. +.|..++|...+ +.+++.+.||.+++||++......-++......
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHD---------KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~ 242 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHD---------KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS 242 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecC---------cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence 99999999999733 22222222 339999999865 678889999999999999876554333333334
Q ss_pred ccEEEEEeccCCCCEEEEeeCC-CcEEEEecCCCCCCCccccC-CCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccc
Q 016032 162 SKVVGLHCNPIQPELLLSCGND-HFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 238 (396)
.+...++|++.+.+++|+-..| ..|.+.|+|.... .+..+ +|.+.|+.++|.| ....|++++.|..+.+||+..-
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 5789999999899999886554 5799999986443 33334 7999999999999 6778999999999999999753
No 180
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6.6e-20 Score=153.19 Aligned_cols=224 Identities=20% Similarity=0.300 Sum_probs=163.4
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC-CcEEEEEeCCCeEEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DGTVYAASSDGTVSCT 92 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~v~iw 92 (396)
+.|.||++.|+|++|+.+| .+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|-|.. ...+++|+.|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 5789999999999999999 6999999999999999998888888889999999999999974 5578889999999999
Q ss_pred ECCCCcccce---eecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccc-------eeeecCC
Q 016032 93 DLETGLALSL---MNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEA-------ILIHRKG 161 (396)
Q Consensus 93 d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~-------~~~~~~~ 161 (396)
|+...+.-.. .......+. .+...|..++-.|++ +.+.+++.||.|+-+|++.......- ......-
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~--cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWS--CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred ecccccccccccCccchhhhhh--hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9985221110 000000011 111237778888887 78999999999999999985432211 1111222
Q ss_pred ccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC-----------C----CccccC--CCC-----------CceeEEE
Q 016032 162 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA-----------G----SSLCDL--PHK-----------RVVNSAY 213 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----------~----~~~~~~--~~~-----------~~i~~~~ 213 (396)
-...++..+|.++.+|++|+.|-..++||.|.... . .++..+ +|. ..++.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 35678999999999999999999999999542111 0 011111 111 1256789
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 214 FSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 214 ~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
|+|+|.-|++.-..-.|+++|+..++.
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 999998887776667899999987653
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.8e-18 Score=152.39 Aligned_cols=299 Identities=17% Similarity=0.196 Sum_probs=201.9
Q ss_pred cccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccc---ceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 18 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK---VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 18 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
.|+-.++|.++||.+ +++|+|..||.|.+|.--. .....+...-|...|++++|+++ +.+|++|+..|.+.+|.+
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~-G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD-GAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC-CceEeecccceEEEEEee
Confidence 477789999999999 7999999999999997543 22233333568999999999999 999999999999999999
Q ss_pred CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceee--------ecCCccEEE
Q 016032 95 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI--------HRKGSKVVG 166 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~--------~~~~~~i~~ 166 (396)
.+++.....++. ..|..+.++||+.+.+....|..|.+............... .....-.+.
T Consensus 281 ~T~~kqfLPRLg----------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~ 350 (792)
T KOG1963|consen 281 ETGKKQFLPRLG----------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTG 350 (792)
T ss_pred cCCCcccccccC----------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccccee
Confidence 998843332222 34999999999999999999999999987554332211111 112335678
Q ss_pred EEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCC---------CCCceeEEEEcCCCCEEEEEeC--------C--
Q 016032 167 LHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP---------HKRVVNSAYFSPSGSKILTTSQ--------D-- 227 (396)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~--------d-- 227 (396)
++++| ..+.++..+..|.|.+||+.+......+.... +.-.++.++.+..|.+++|.-. |
T Consensus 351 ~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 351 VSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred EEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 88999 78888888899999999997755543333221 2235777888888999988742 2
Q ss_pred CcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhh--
Q 016032 228 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAE-- 305 (396)
Q Consensus 228 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~-- 305 (396)
-.+++|-.......-.+...+ ....+...+..+..+|.. +. ..+ +.+.||.++||-+...+.+..
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I--~~PH~~~~vat~~~~~~r-s~-------~~v---ta~~dg~~KiW~~~~~~n~~k~~ 496 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKI--NNPHGNAFVATIFLNPTR-SV-------RCV---TASVDGDFKIWVFTDDSNIYKKS 496 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEE--ecCCCceeEEEEEecCcc-cc-------eeE---EeccCCeEEEEEEecccccCcCc
Confidence 357778765433211110000 000111111122233321 11 111 467899999999844332221
Q ss_pred -------hcCCCCCCCcceeeeccCCcEEEeecCCcEEEEcCCCc
Q 016032 306 -------VMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEK 343 (396)
Q Consensus 306 -------~~~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~~~~ 343 (396)
+..-+..++..+ +|+.||.+|+.+-|+.|.+||..+.
T Consensus 497 s~W~c~~i~sy~k~~i~a~-~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 497 SNWTCKAIGSYHKTPITAL-CFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred cceEEeeeeccccCcccch-hhcCCCcEEEEecCCEEEEecCCCh
Confidence 111234667766 8999999888888999999999883
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.6e-17 Score=148.74 Aligned_cols=299 Identities=26% Similarity=0.416 Sum_probs=214.4
Q ss_pred CCCCC-ccceeeeccccCCeEEEEecCCCCcEEEEEeC-CCcEEEeecccceeeeEecCCcccceeEEEEecCCCc-EEE
Q 016032 5 HVIPD-QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDG-TVY 81 (396)
Q Consensus 5 ~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~ 81 (396)
|.... ......+..|...|.+++|+|++ .++++++. |+.+++|+.........+ .+|...|.+++|+|+ +. .++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~ 215 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPD-GGLLIA 215 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCC-cceEEE
Confidence 44444 45667889999999999999999 47888875 999999999986666666 569999999999988 65 555
Q ss_pred EEeCCCeEEEEECCCCcccc-eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecC
Q 016032 82 AASSDGTVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 160 (396)
Q Consensus 82 s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 160 (396)
+++.|+.|++||...+.... .+..+... . ...|++++..+++++.++.+++|++......... ...+
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~ 283 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDS---------V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--LSGH 283 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCCcc---------e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE--EecC
Confidence 55899999999888666655 23222221 2 2279999988999999999999999976651111 1344
Q ss_pred CccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEE-eCCCcEEEEEccccc
Q 016032 161 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGN 239 (396)
Q Consensus 161 ~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~ 239 (396)
...+.++.|.| ++..+++++.|+.+.+|+..............|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 284 ~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 284 SSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 66899999999 8888888888889999988765443333323566679999994343556555 678899999998765
Q ss_pred ccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceee
Q 016032 240 LDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNK 319 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 319 (396)
... ....... ...+.+.+ . ..... .+..++.+.+|+.............. ..+... .
T Consensus 363 ~~~------~~~~~~~---~~~~~~~~-~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 419 (466)
T COG2319 363 PLK------TLEGHSN---VLSVSFSP-D-GRVVS----------SGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSL-D 419 (466)
T ss_pred eeE------EecCCce---EEEEEECC-C-CCEEE----------EecCCCceEEEecccCeeeeeccCCC-CcEEEE-E
Confidence 100 0000000 22445554 3 22221 25778899999998888776665543 344444 7
Q ss_pred eccCCcEEEeec-CCcEEEEcCCC
Q 016032 320 LHPRDDVLASGS-SRSIFIWRPKE 342 (396)
Q Consensus 320 ~~~~~~~l~sg~-d~~i~iw~~~~ 342 (396)
+.+++..+++++ ++.+++|+..+
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 420 FSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEeccC
Confidence 899999999877 89999999988
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.2e-17 Score=147.21 Aligned_cols=313 Identities=13% Similarity=0.174 Sum_probs=214.3
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCC--cEEEEEeCCCcEEEeecccceeeeEe-----------------------
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNN--HILLSGDKKGQVGVWDFYKVSEKIVY----------------------- 59 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------- 59 (396)
+...++.++..|.+|..+++.+.+.|... .++++++.||.|++||...+.....+
T Consensus 42 yS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~ 121 (792)
T KOG1963|consen 42 YSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVY 121 (792)
T ss_pred EecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeE
Confidence 56677888899999999999999988765 46779999999999998433221110
Q ss_pred -------------------------------------------------------------------------------c
Q 016032 60 -------------------------------------------------------------------------------G 60 (396)
Q Consensus 60 -------------------------------------------------------------------------------~ 60 (396)
.
T Consensus 122 ~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~ 201 (792)
T KOG1963|consen 122 VSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDIT 201 (792)
T ss_pred eecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhh
Confidence 0
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCC--Cc--ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLET--GL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 136 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 136 (396)
..|.-.+++.+++|+ +.+++++..||.|.+|.--. +. ....+.-+. ..|.+++|+++|.+|++|+.
T Consensus 202 ~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~---------~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 202 VHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH---------DEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred hhhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecc---------cccceeEEecCCceEeeccc
Confidence 124556789999999 99999999999999997433 11 111222221 24999999999999999999
Q ss_pred CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC---------CCCC
Q 016032 137 FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---------PHKR 207 (396)
Q Consensus 137 ~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~ 207 (396)
.+.+.+|.+.+++.. ....-+++|..+.++| ++.+.+....|+.|.+-...++.....+..+ ...+
T Consensus 272 E~VLv~Wq~~T~~kq----fLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 272 EGVLVLWQLETGKKQ----FLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred ceEEEEEeecCCCcc----cccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 999999999997732 3445566899999999 9999999999999999988665554444333 1245
Q ss_pred ceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccc---cCCceeEEeCCCCCCCceeeEeeeeeeec
Q 016032 208 VVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR---HLTPFRAEWDPKDPSESLAVIGRYISENY 284 (396)
Q Consensus 208 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 284 (396)
-.+.++++|..+.++..+..|.|.+||+.+...+.............. ......++.+.. |.+++..-
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~---------gs~maT~E 417 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF---------GSWMATLE 417 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc---------ceEEEEee
Confidence 567889999777888888999999999988776543332222211111 111112222222 44443210
Q ss_pred -----cccc--ccceEEEEcCcc----chhhhhcCCCCCCCcceeeeccCCc-EEEeec-CCcEEEEcCC
Q 016032 285 -----NGAA--LHPIDFIDITTG----QLVAEVMDPNITTISPVNKLHPRDD-VLASGS-SRSIFIWRPK 341 (396)
Q Consensus 285 -----~g~~--d~~i~vwd~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~-~l~sg~-d~~i~iw~~~ 341 (396)
.... .-.+++|-.... .+...+..+|...+......++... ..++++ ||.++||-+.
T Consensus 418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~ 487 (792)
T KOG1963|consen 418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFT 487 (792)
T ss_pred eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEe
Confidence 1222 456888976533 3444455566555554434455544 788888 9999999873
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=5.8e-19 Score=136.04 Aligned_cols=209 Identities=20% Similarity=0.249 Sum_probs=155.4
Q ss_pred eeec-cccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee-eeEec----CCcccceeEEEEecC-CCcEEEEEeCC
Q 016032 14 AVIR-YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-KIVYG----NIHSCIVNNIRFNPT-NDGTVYAASSD 86 (396)
Q Consensus 14 ~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~----~~~~~~v~~~~~~~~-~~~~l~s~~~d 86 (396)
..|. .|-+.|.|+.|.|++.+ |++-. |..|.+|++..... ...+. ..|....++-+|+|. +++.+++.+ |
T Consensus 116 ~~Ldteavg~i~cvew~Pns~k-lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d 192 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDK-LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-D 192 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCe-eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-C
Confidence 3444 56679999999999865 55544 78999999987665 22221 345667888899993 366666655 8
Q ss_pred CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCC-EEEEEecCCeEEEEeCCCCCCCccceeeecCCccEE
Q 016032 87 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
+++..||+++......++-.. ...+..+.|+|+.. +|++++.||.|++||.+..+........|.| .+.
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAH--------gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW 262 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAH--------GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVW 262 (370)
T ss_pred CcEEEEEccchhhhcchhhhh--------cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--EEE
Confidence 999999999887776664221 13389999999965 5677889999999999987765544444444 999
Q ss_pred EEEeccCCCCEEEEeeCCCcEEEEecCCCCC---------------------CCc-----cccC-CCCCceeEEEEcC-C
Q 016032 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEA---------------------GSS-----LCDL-PHKRVVNSAYFSP-S 217 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---------------------~~~-----~~~~-~~~~~i~~~~~~~-~ 217 (396)
++.|+|...+++++|+.|..|.+|...+-.. .++ +..+ .|...|.+++||. +
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 9999998889999999999999997542110 111 1122 5889999999998 6
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 016032 218 GSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 218 ~~~l~~~~~d~~i~iwd~ 235 (396)
.-++|+-+.||.+.|=.+
T Consensus 343 PWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSV 360 (370)
T ss_pred CeeEEEeccCceEEeecC
Confidence 667889999999988654
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=9e-19 Score=135.10 Aligned_cols=206 Identities=16% Similarity=0.215 Sum_probs=159.5
Q ss_pred cccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee--eeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECC
Q 016032 18 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 95 (396)
Q Consensus 18 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 95 (396)
.|..+++++.|+.-.++++.+++-|-+..|||++++.. +.+.+..|...|..++|...+.+.|++.+.||+||+||++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 46789999999998889999999999999999998633 4444467999999999999767899999999999999999
Q ss_pred CCcccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEe-cCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCC
Q 016032 96 TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 173 (396)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 173 (396)
.-+....+...+.. ..+...++|+++. +++++-. ....|.+.|++...... .....|.+.|++++|.|..
T Consensus 228 ~leHSTIIYE~p~~------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv--a~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSP------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV--ARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred ccccceEEecCCCC------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce--ehhhcCcccccceEecCCC
Confidence 88776666544432 1347889998865 5555544 44689999999866443 3456677799999999988
Q ss_pred CCEEEEeeCCCcEEEEecCCCCC---CCccccCCCCCceeEEEEcC-CCCEEEEEeCCCcEEE
Q 016032 174 PELLLSCGNDHFARIWDIRRLEA---GSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRI 232 (396)
Q Consensus 174 ~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i 232 (396)
...|.+++.|..+.+||+.+.-. ..++......+.|+.+.|++ .+..++.+. ++.+.+
T Consensus 300 ~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 89999999999999999976433 11222224667899999997 677787775 444544
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=5.8e-18 Score=134.96 Aligned_cols=241 Identities=15% Similarity=0.228 Sum_probs=172.8
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC--CeEEEEECCCC
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--GTVSCTDLETG 97 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~ 97 (396)
...+..+.|+.+. .+|..|+.|| .++|........... ......|-.+-|+. .+++..+.+ +.+++.++..+
T Consensus 5 ~~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred Ccceeeeeeccce-eEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccC
Confidence 4467788899988 6788898887 678877664442222 22444566677774 466665554 35999999988
Q ss_pred cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEE
Q 016032 98 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
..+..+..+.. |.++.++. +.|++.-.+ .|+|||++..+.+..+.....+...+.++..++ .+.++
T Consensus 79 ~~ICe~~fpt~----------IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~yl 144 (391)
T KOG2110|consen 79 TTICEIFFPTS----------ILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYL 144 (391)
T ss_pred ceEEEEecCCc----------eEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceE
Confidence 88887766544 88888764 445555544 499999999988876655545554677777777 66677
Q ss_pred EEee--CCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccc
Q 016032 178 LSCG--NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 255 (396)
Q Consensus 178 ~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 255 (396)
+.-+ ..|.|.+||..+.+....+. .|.+.+.+++|+++|.+||+++..|+|
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTV------------------------- 197 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTV------------------------- 197 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceE-------------------------
Confidence 7533 46899999998766655554 699999999999999999999998874
Q ss_pred cCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCC-CCCCcceeeeccCCcEEEeec-CC
Q 016032 256 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN-ITTISPVNKLHPRDDVLASGS-SR 333 (396)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~sg~-d~ 333 (396)
||||.+.+|+.+.+|+... ...|+++ +|+|++++|++.+ .+
T Consensus 198 ------------------------------------IRVf~v~~G~kl~eFRRG~~~~~IySL-~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 198 ------------------------------------IRVFSVPEGQKLYEFRRGTYPVSIYSL-SFSPDSQFLAASSNTE 240 (391)
T ss_pred ------------------------------------EEEEEcCCccEeeeeeCCceeeEEEEE-EECCCCCeEEEecCCC
Confidence 4444445555555554332 2456666 8999999999988 79
Q ss_pred cEEEEcCCCcc
Q 016032 334 SIFIWRPKEKS 344 (396)
Q Consensus 334 ~i~iw~~~~~~ 344 (396)
+|+|+.++...
T Consensus 241 TVHiFKL~~~~ 251 (391)
T KOG2110|consen 241 TVHIFKLEKVS 251 (391)
T ss_pred eEEEEEecccc
Confidence 99999987654
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=4.1e-19 Score=151.94 Aligned_cols=254 Identities=12% Similarity=0.113 Sum_probs=183.6
Q ss_pred CCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe
Q 016032 5 HVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
++..++..+++|+||.+.|+|++|+.+| ..+|+|+.|..|.+|...-. .... ..|+..|.|+.|+|- .+.|++++
T Consensus 38 yD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klE-G~Lk--YSH~D~IQCMsFNP~-~h~LasCs 112 (1081)
T KOG1538|consen 38 YDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLE-GILK--YSHNDAIQCMSFNPI-THQLASCS 112 (1081)
T ss_pred EeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEeccccc-ceee--eccCCeeeEeecCch-HHHhhhcc
Confidence 5677888899999999999999999999 68999999999999986533 2333 349999999999999 88999988
Q ss_pred CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 85 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
.. ..-+|.......... .....+.+++|..||.+++.|-.+|+|.+-+-.. +....+....+...+|
T Consensus 113 Ls-dFglWS~~qK~V~K~-----------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspi 179 (1081)
T KOG1538|consen 113 LS-DFGLWSPEQKSVSKH-----------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPI 179 (1081)
T ss_pred hh-hccccChhhhhHHhh-----------hhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCc
Confidence 54 466888765433221 1124489999999999999999999999975433 2222222333456689
Q ss_pred EEEEeccCCC----CEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 165 VGLHCNPIQP----ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 165 ~~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
.+++|+|..+ ..+++.....++.+|.+.-...++ -. .-.-...|+.+.++|.+++.|+.|+.+++|--+ |-.
T Consensus 180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk-~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-Gvr 255 (1081)
T KOG1538|consen 180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK-DR--ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVR 255 (1081)
T ss_pred eEEEecCCCCCCccceEEEEeccceeEEEEecceeecc-cc--cCCCCchhheeccCCcEEEEccCCCceEEEeec-CeE
Confidence 9999999533 467777778888888775321111 11 123346789999999999999999999999653 222
Q ss_pred cCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCcc
Q 016032 241 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTG 300 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~ 300 (396)
+.+ ...+..+ .+++...|+ +++++ .|+.||+|..|++...
T Consensus 256 LGT------vg~~D~W--IWtV~~~PN---------sQ~v~---~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 256 LGT------VGEQDSW--IWTVQAKPN---------SQYVV---VGCQDGTIACYNLIFS 295 (1081)
T ss_pred Eee------cccccee--EEEEEEccC---------CceEE---EEEccCeeehhhhHHh
Confidence 211 1122222 245666777 67777 7999999999997543
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.9e-19 Score=144.76 Aligned_cols=201 Identities=18% Similarity=0.203 Sum_probs=153.3
Q ss_pred EEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccccee
Q 016032 24 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLM 103 (396)
Q Consensus 24 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 103 (396)
.+++|+++| ..|++|+.||.+|||++......... ..|...|.++.|+|+ +.+|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCchhhhc
Confidence 689999998 68999999999999998776666555 569999999999999 9999999999 8999999999666554
Q ss_pred ecCCCCCCCCCcceeeeEEEeCCCC---CEEEE--EecCCeEEEEeCCCCCCC--ccceeeecCCccEEEEEeccCCCCE
Q 016032 104 NVNPNGWHGPRTWRMLYGMDINPEK---GVVLV--ADNFGFLYLVDARTNSRS--GEAILIHRKGSKVVGLHCNPIQPEL 176 (396)
Q Consensus 104 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~--~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~ 176 (396)
...... ..+..+.|+.++ .++++ ....+.|..|++...... ............|.+++.++ ++++
T Consensus 224 t~~~k~-------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf 295 (398)
T KOG0771|consen 224 TPFSKD-------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKF 295 (398)
T ss_pred CCcccc-------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcE
Confidence 321111 226667787776 33333 344567777776543321 11111111222699999999 9999
Q ss_pred EEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 177 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
++.|+.||.|.+++..+.+..+.++. .|...|+.+.|+|+.+++++.+.+..+.+..+.-
T Consensus 296 ~AlGT~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeccCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999987666544433 6889999999999999999999999999887753
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=2.4e-17 Score=131.48 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=150.0
Q ss_pred CeEEEEecCCCCcEEEEEeCCC--cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc
Q 016032 22 RVTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 99 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 99 (396)
.|--+-|+.. ++|..+.+. .+++.++.....+..+. ...+|.++.++. +.|+++-.+ .|.|||+++.+.
T Consensus 48 ~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~Mkl 118 (391)
T KOG2110|consen 48 SIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKL 118 (391)
T ss_pred EEEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEcc---ceEEEEEcc-cEEEEeccccee
Confidence 3555556543 455544443 48888888777666654 667899999985 467776655 499999999999
Q ss_pred cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEE--ecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEE
Q 016032 100 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA--DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
++.+...+.. ...+.++++++.+.+++.- ...|.|.+||..+.+... ..+.|.+++.+++|++ +|.+|
T Consensus 119 LhTI~t~~~n------~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~---~I~aH~~~lAalafs~-~G~ll 188 (391)
T KOG2110|consen 119 LHTIETTPPN------PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN---TINAHKGPLAALAFSP-DGTLL 188 (391)
T ss_pred ehhhhccCCC------ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee---EEEecCCceeEEEECC-CCCEE
Confidence 9888654222 1236677777777788874 356899999998866543 4557777999999999 99999
Q ss_pred EEeeCCCc-EEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 178 LSCGNDHF-ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 178 ~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
|++++.|+ |||+.+.+++....++.-.....|.+++|+|++.+|++.+..++|++|.+....
T Consensus 189 ATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999987 799999876655444433345678999999999999999999999999998655
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=9.5e-19 Score=144.19 Aligned_cols=277 Identities=17% Similarity=0.231 Sum_probs=202.7
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC--CCEEEEEecCC
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFG 138 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g 138 (396)
..|.+.|..+.|+.. +..|++++.|..|.+||...+.....+... |. ..|....|-|. ...+++.+.||
T Consensus 139 ~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SG------H~--~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESG------HC--NNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred cCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccc------cc--cchhhhhccCCCCCcCceeccccC
Confidence 579999999999999 999999999999999999998877666422 22 12555567664 46789999999
Q ss_pred eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCC---ceeEEEE
Q 016032 139 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKR---VVNSAYF 214 (396)
Q Consensus 139 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~---~i~~~~~ 214 (396)
.+++=.+..............|.++|.-++.-|....-|.+++.|+.+.-+|++.......+... .+.. ....++.
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 99998877665555555667777899999999988889999999999999999876654444332 2333 5678899
Q ss_pred cC-CCCEEEEEeCCCcEEEEEcccccccCCCc---ceeecccc-cccCCceeEEeCCCCCCCceeeEeeeeeeecccccc
Q 016032 215 SP-SGSKILTTSQDNRLRIWDSIFGNLDSPSR---EIVHSHDF-NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL 289 (396)
Q Consensus 215 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d 289 (396)
+| +...+++++.|-.+++||.+.-......+ .+...+-. .....+.+++|+.+. +.+++ ...|
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~--------sElLa----SYnD 357 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG--------SELLA----SYND 357 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc--------cceee----eecc
Confidence 99 45589999999999999998654322111 11111111 223334467777653 33443 5667
Q ss_pred cceEEEEcC--cc----------chhhh-hcCCC-CCCCcceeeeccCCcEEEeecC-CcEEEEcCCCcceeeeccccce
Q 016032 290 HPIDFIDIT--TG----------QLVAE-VMDPN-ITTISPVNKLHPRDDVLASGSS-RSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 290 ~~i~vwd~~--~~----------~~~~~-~~~~~-~~~i~~~~~~~~~~~~l~sg~d-~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
-.|+++.-. .| ..+.. +++|. ...|..++.|-|...|+++|+| |.|.||+-.+++.++.+++...
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~ 437 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH 437 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc
Confidence 778888532 22 22222 56663 3457788889999999999996 9999999999999999999888
Q ss_pred EEEe
Q 016032 355 IIVC 358 (396)
Q Consensus 355 ~~~~ 358 (396)
+|.|
T Consensus 438 VVNC 441 (559)
T KOG1334|consen 438 VVNC 441 (559)
T ss_pred eEec
Confidence 7777
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=4.3e-16 Score=139.53 Aligned_cols=297 Identities=24% Similarity=0.409 Sum_probs=206.2
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce-eeeEecCCcccceeEEEE-ecCCCc-EEEEEeC-CCeEE
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS-EKIVYGNIHSCIVNNIRF-NPTNDG-TVYAASS-DGTVS 90 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~-~l~s~~~-dg~v~ 90 (396)
.+..|...|.++.|.+.+ ..++.++.|+.+.+|+..... ....+...+...+..+.+ .++ .. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD-GNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCC-cceEEeccCCCCccEE
Confidence 567899999999999998 578888899999999999876 444442223346777777 777 55 5555444 99999
Q ss_pred EEECCC-CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-CCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 91 CTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 91 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
+|+... ......+..+... +..++|+|++..+++++. ++.+++|++....... ....+...+.+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~ 205 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSES---------VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLA 205 (466)
T ss_pred EEEecCCCeEEEEEecCccc---------EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE---eeccCCCceEEEE
Confidence 999997 5665555554433 889999999998888885 9999999999843332 2333566899999
Q ss_pred eccCCCC-EEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcce
Q 016032 169 CNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREI 247 (396)
Q Consensus 169 ~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 247 (396)
|+| ++. .+++++.|+.|++||......... ....|.... ...|+|++.++++++.|+.+++|++..... ..
T Consensus 206 ~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~ 277 (466)
T COG2319 206 FSP-DGGLLIASGSSDGTIRLWDLSTGKLLRS-TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-----LL 277 (466)
T ss_pred EcC-CcceEEEEecCCCcEEEEECCCCcEEee-ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-----EE
Confidence 998 776 556658999999998763332221 122455554 338999998999999999999999986554 00
Q ss_pred eecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhc--CCCCCCCcceeeeccCCc
Q 016032 248 VHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM--DPNITTISPVNKLHPRDD 325 (396)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 325 (396)
... .........+.|.|. +..++ +++.|+.+.+|+..+........ .+. ..+..+ .+.+++.
T Consensus 278 ~~~--~~~~~~v~~~~~~~~---------~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 341 (466)
T COG2319 278 RTL--SGHSSSVLSVAFSPD---------GKLLA---SGSSDGTVRLWDLETGKLLSSLTLKGHE-GPVSSL-SFSPDGS 341 (466)
T ss_pred EEE--ecCCccEEEEEECCC---------CCEEE---EeeCCCcEEEEEcCCCceEEEeeecccC-CceEEE-EECCCCC
Confidence 001 111222235678874 44444 35556779999988777665554 443 346666 5643434
Q ss_pred EEEee-c-CCcEEEEcCCCcceeeec
Q 016032 326 VLASG-S-SRSIFIWRPKEKSELVEQ 349 (396)
Q Consensus 326 ~l~sg-~-d~~i~iw~~~~~~~~~~~ 349 (396)
.++.+ . |+.+.+|+..........
T Consensus 342 ~~~~~~~~d~~~~~~~~~~~~~~~~~ 367 (466)
T COG2319 342 LLVSGGSDDGTIRLWDLRTGKPLKTL 367 (466)
T ss_pred EEEEeecCCCcEEeeecCCCceeEEe
Confidence 55555 5 899999999888733333
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.3e-17 Score=148.23 Aligned_cols=272 Identities=12% Similarity=0.096 Sum_probs=178.5
Q ss_pred CCCCCccceeeeccc---cCCeEEEEecC-CCCcEEEEEeCCCcEEEeecccc-----eeeeEe------cCCcccceeE
Q 016032 5 HVIPDQVNCAVIRYH---SRRVTCLEFHP-TNNHILLSGDKKGQVGVWDFYKV-----SEKIVY------GNIHSCIVNN 69 (396)
Q Consensus 5 ~~~~~~~~~~~~~~h---~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~------~~~~~~~v~~ 69 (396)
|+-.....+..|..+ ...|+.+.+-. +...+|++|+.||.|+||+-... +.+... ..+..+.=.-
T Consensus 1091 wd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v 1170 (1387)
T KOG1517|consen 1091 WDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLV 1170 (1387)
T ss_pred EecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCee
Confidence 444444444444433 34688888854 33468999999999999975332 111111 0112222255
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCC-CCCEEEEEecCCeEEEEeCCCC
Q 016032 70 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTN 148 (396)
Q Consensus 70 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~i~d~~~~ 148 (396)
+.|... ..+|++++.-..|+|||.........+...... .++++.-+. .|+.+++|..||.|++||.+..
T Consensus 1171 ~dWqQ~-~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t--------~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a 1241 (1387)
T KOG1517|consen 1171 VDWQQQ-SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST--------LVTALSADLVHGNIIAAGFADGSVRVYDRRMA 1241 (1387)
T ss_pred eehhhh-CCeEEecCCeeEEEEEecccceeEeecccCCCc--------cceeecccccCCceEEEeecCCceEEeecccC
Confidence 678887 666777776889999999988777766544332 266655433 4799999999999999999986
Q ss_pred CCCccceeeecCCc--cEEEEEeccCCCC-EEEEeeCCCcEEEEecCCCCCCCccccCCC---CCceeEEEEcCCCCEEE
Q 016032 149 SRSGEAILIHRKGS--KVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGSSLCDLPH---KRVVNSAYFSPSGSKIL 222 (396)
Q Consensus 149 ~~~~~~~~~~~~~~--~i~~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~ 222 (396)
...........|.. +|..+.+.+ .|. .|++|+.+|.|++||+|.......+....| .+..+++..+++..++|
T Consensus 1242 ~~ds~v~~~R~h~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1242 PPDSLVCVYREHNDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred CccccceeecccCCcccceeEEeec-CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeee
Confidence 55333333333433 499999988 444 599999999999999997422222222222 23589999999999999
Q ss_pred EEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccc
Q 016032 223 TTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQ 301 (396)
Q Consensus 223 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~ 301 (396)
+|+. +.|+||++...++ ...+.. ...--.+.....++.|+|. --+++ .|+.|..|.||.....+
T Consensus 1321 sGs~-q~ikIy~~~G~~l-~~~k~n-~~F~~q~~gs~scL~FHP~---------~~llA---aG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1321 SGSA-QLIKIYSLSGEQL-NIIKYN-PGFMGQRIGSVSCLAFHPH---------RLLLA---AGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecCc-ceEEEEecChhhh-cccccC-cccccCcCCCcceeeecch---------hHhhh---hccCCceEEEeecCCcC
Confidence 9998 8999999975443 222211 1111122233467889987 33444 68999999999876554
No 193
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=5.4e-17 Score=148.02 Aligned_cols=275 Identities=16% Similarity=0.164 Sum_probs=180.5
Q ss_pred eecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc-----ceeecCCCCCCCCCcceeeeEE
Q 016032 48 WDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL-----SLMNVNPNGWHGPRTWRMLYGM 122 (396)
Q Consensus 48 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~ 122 (396)
|+.+ +..+..+ ..|...|..++.++..+.+|++|+.||+|++|+.+.-..- .....+. ....+.++
T Consensus 1034 W~p~-G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-------~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNPR-GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-------EGSRVEKV 1104 (1431)
T ss_pred CCcc-ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-------cCCceEEE
Confidence 4443 2333333 5688999999999885699999999999999998753222 1111111 11348888
Q ss_pred EeCCCCCEEEEEecCCeEEEEeCCCCCCCccc------eeeecCCccEEEEEeccCCCC-EEEEeeCCCcEEEEecCCCC
Q 016032 123 DINPEKGVVLVADNFGFLYLVDARTNSRSGEA------ILIHRKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLE 195 (396)
Q Consensus 123 ~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~ 195 (396)
...+.++.+|+++.||.|.+.++......... ......+.-+..-++...... .++.+..-+.|..||++...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 99999999999999999999998773211110 112222323334444443444 78888888999999999766
Q ss_pred CCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceee
Q 016032 196 AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAV 275 (396)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (396)
....++.....+.|++++.+|.+.+++.|+..|.+.+||++-+..+. ...+..+..+..+..+|..+..+..+
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~-------sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL-------SWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee-------cccCcccCCcceEEeeccCCCCceEE
Confidence 65555544556889999999999999999999999999998766533 23333333333445555544334443
Q ss_pred Eeeeeeeecccc-cccceEEEEcCccchhhhhcCCCC----------------CCCccee-eeccCCcEEEeec-CCcEE
Q 016032 276 IGRYISENYNGA-ALHPIDFIDITTGQLVAEVMDPNI----------------TTISPVN-KLHPRDDVLASGS-SRSIF 336 (396)
Q Consensus 276 ~g~~~~~~~~g~-~d~~i~vwd~~~~~~~~~~~~~~~----------------~~i~~~~-~~~~~~~~l~sg~-d~~i~ 336 (396)
. +|. ..+.|.+|++.+|.+...+..... ..+.... .+...+.++.+|+ |..|+
T Consensus 1258 s--------~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1258 S--------AGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred E--------ecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcccee
Confidence 3 233 678899999998866555443210 0111110 2333455677777 99999
Q ss_pred EEcCCCccee
Q 016032 337 IWRPKEKSEL 346 (396)
Q Consensus 337 iw~~~~~~~~ 346 (396)
.||....+..
T Consensus 1330 ~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1330 KWDPTRPEIS 1339 (1431)
T ss_pred eccCCCcccc
Confidence 9999887654
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.5e-17 Score=131.23 Aligned_cols=206 Identities=19% Similarity=0.240 Sum_probs=147.5
Q ss_pred cEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCC--CCCEEEEEecCCeEEEEeCCCCCCCccce
Q 016032 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVADNFGFLYLVDARTNSRSGEAI 155 (396)
Q Consensus 78 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~i~d~~~~~~~~~~~ 155 (396)
..++++...|.|++||..+++.+..++.++.. ++.+.|.. ....+.+++.||.|++||++.........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~---------~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPAT---------TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCc---------ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 56888888999999999999999999877655 56667755 46789999999999999999877655443
Q ss_pred eeecCCccEEEEEeccCCCCEEEEeeC----CCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEeCCCcE
Q 016032 156 LIHRKGSKVVGLHCNPIQPELLLSCGN----DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRL 230 (396)
Q Consensus 156 ~~~~~~~~i~~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i 230 (396)
.....+.+..+++.+. +++++++|+. +-.|.+||+|..+.......-.|...|+++.|+| +.++|++|+.||.|
T Consensus 112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 3333334677888876 7788888864 6689999999765521111226999999999999 78899999999999
Q ss_pred EEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCC
Q 016032 231 RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 309 (396)
Q Consensus 231 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~ 309 (396)
.+||+.......++ .+.++...+.-.+.|...... +.. +-+......+|+++.+.....+..+
T Consensus 191 nlfD~~~d~EeDaL-----~~viN~~sSI~~igw~~~~yk-------rI~----clTH~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 191 NLFDTKKDNEEDAL-----LHVINHGSSIHLIGWLSKKYK-------RIM----CLTHMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred EeeecCCCcchhhH-----HHhhcccceeeeeeeecCCcc-------eEE----EEEccCceeEEEccCCChhhcccCc
Confidence 99999765322211 122222333346777766322 211 2356677999999988866655433
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.1e-17 Score=132.86 Aligned_cols=261 Identities=15% Similarity=0.176 Sum_probs=172.2
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
.+|.+.|+++.|+.+ +++|++|+.|..+++|+++....... ..+-+..++.+...|.|++|.....++++|..+++|
T Consensus 53 ~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~--~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 53 REHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKT--PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcC--CCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 479999999999998 99999999999999999864322111 122223444455669999999999999999999999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCC-CCCccccCCCCCceeEEEEcC-CC
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE-AGSSLCDLPHKRVVNSAYFSP-SG 218 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~ 218 (396)
.+.|+++.+.+... ......+.|..+..+| ..+.|++.+.++.|.+||.+... .+..+...........+.|+| ..
T Consensus 130 I~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVA-NENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccceeeeee-cccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999986544321 1222334799999999 68899999999999999998765 333332224455678899999 66
Q ss_pred CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccC-CceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 219 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHL-TPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 219 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
.+|++.+..+-+.+||++.... +.........+.... .-+...|+|.. .-+. +-.....-.+||+
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~--~~~~~~~~~~L~~~~~~~M~~~~~~~G---------~Q~m---siRR~~~P~~~D~ 273 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQAR--PVYQRSMFKGLPQENTEWMGSLWSPSG---------NQFM---SIRRGKCPLYFDF 273 (609)
T ss_pred eeEEeccccCCCCceeeccccc--hHHhhhccccCcccchhhhheeeCCCC---------Ceeh---hhhccCCCEEeee
Confidence 7888999999999999985432 111111111111111 11467899873 2222 1122223446777
Q ss_pred CccchhhhhcCCCC------CCCcceeeeccCCcEEEeec-CCcEEEEcCCC
Q 016032 298 TTGQLVAEVMDPNI------TTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 342 (396)
Q Consensus 298 ~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~ 342 (396)
.+.++..--..|.. ..+.++ +|.-+ .-+++|+ +-.|++|.+..
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~-~F~~D-~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSM-TFIDD-YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeee-eeecc-eeeeccCcccceEEEecCC
Confidence 66443321112221 123333 45444 4488999 78999998753
No 196
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.78 E-value=6.5e-16 Score=132.08 Aligned_cols=297 Identities=19% Similarity=0.227 Sum_probs=184.0
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCC
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 114 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 114 (396)
++++-..++.|.|.|..+.+....+..+ ...-..+.|+|+ ++++++++.||.|.++|+.+++.+..+.....
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~------ 79 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKVGGN------ 79 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE------
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEecCCC------
Confidence 3455667899999999998888887533 333455789999 88999999999999999999999988876543
Q ss_pred cceeeeEEEeCCCCCEEEEEe-cCCeEEEEeCCCCCCCccceeeec----CCccEEEEEeccCCCCEEEEeeCCCcEEEE
Q 016032 115 TWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHR----KGSKVVGLHCNPIQPELLLSCGNDHFARIW 189 (396)
Q Consensus 115 ~~~~v~~~~~~~~~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~d~~i~~w 189 (396)
..+++++++|+++++++ ..+.+.++|.++.+.......... ....+.++..+|....++++.-+.+.|.+-
T Consensus 80 ----~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 80 ----PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp ----EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred ----cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 78899999999998875 689999999999776544322111 234677888888333455666666889888
Q ss_pred ecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEE-eCCCcEEEEEcccccccCCC---------c--ceeeccc---c-
Q 016032 190 DIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIWDSIFGNLDSPS---------R--EIVHSHD---F- 253 (396)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~---------~--~~~~~~~---~- 253 (396)
|....+.. ....+..........|+|++++++++ ...+.|-++|..++++.... . ...+... +
T Consensus 156 dy~d~~~~-~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~ 234 (369)
T PF02239_consen 156 DYSDPKNL-KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWA 234 (369)
T ss_dssp ETTTSSCE-EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEE
T ss_pred Eecccccc-ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEe
Confidence 87654322 22223344567789999999987665 45678889998877653210 0 0000000 0
Q ss_pred ccc-------------------------------CCceeEEeCCCCCCCceeeEeeeeeee-cccccccceEEEEcCccc
Q 016032 254 NRH-------------------------------LTPFRAEWDPKDPSESLAVIGRYISEN-YNGAALHPIDFIDITTGQ 301 (396)
Q Consensus 254 ~~~-------------------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~g~~d~~i~vwd~~~~~ 301 (396)
..+ ..++-+.-+|+ ++++... +.+...++|.++|..+.+
T Consensus 235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~---------s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 235 TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPD---------SRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT----------SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred eccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCC---------CccEEeeccCCCCCceEEEEECcCcc
Confidence 000 00011222333 5666544 345667899999999988
Q ss_pred hhhhhcCCCCCCCcceeeeccCCcEEEeec---CCcEEEEcCCCcceeeeccccce
Q 016032 302 LVAEVMDPNITTISPVNKLHPRDDVLASGS---SRSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~---d~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
.+.++.......+..+ .|+++|+.+..+. ++.|.|||..+.+++.++....+
T Consensus 306 ~~~~i~~~~~~~~~h~-ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~tP 360 (369)
T PF02239_consen 306 VVKTITPGPGKRVVHM-EFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVPTP 360 (369)
T ss_dssp EEE-HHHHHT--EEEE-EE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--SE
T ss_pred eeEEEeccCCCcEecc-EECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEeeCC
Confidence 7777653332335555 8999999776654 34899999999999998875443
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=4.3e-17 Score=136.26 Aligned_cols=186 Identities=13% Similarity=0.218 Sum_probs=138.1
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
..+.+|.++|.|-.|+|+| .-|+|++.||.|++|.-...-.... .....+|+|++|.|+....+++.+ +.+.|=-
T Consensus 98 ~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGMLRStl--~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKp 172 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGMLRSTV--VQNEESIRCARWAPNSNSIVFCQG--GHISIKP 172 (737)
T ss_pred hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchHHHHH--hhcCceeEEEEECCCCCceEEecC--CeEEEee
Confidence 4567899999999999999 5799999999999998765332222 336789999999999555555544 3455555
Q ss_pred CCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCC
Q 016032 94 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 173 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 173 (396)
+.....+...+.+. ..|.++.|++..+.+++|+.|-..++||..... ++....+..+|++++|+| +
T Consensus 173 L~~n~k~i~WkAHD---------GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~ey~ITSva~np-d 238 (737)
T KOG1524|consen 173 LAANSKIIRWRAHD---------GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAEEYAITSVAFNP-E 238 (737)
T ss_pred cccccceeEEeccC---------cEEEEeecCccccceeecCCceeEEeecccCcc----cccCChhccceeeeeecc-c
Confidence 55444444444433 239999999999999999999999999987633 223445566899999999 6
Q ss_pred CCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEE
Q 016032 174 PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233 (396)
Q Consensus 174 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 233 (396)
..++.++. +++++ .....+.|..++||+||..+++|+..|.+.+=
T Consensus 239 -~~~~v~S~-nt~R~-------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 -KDYLLWSY-NTARF-------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -cceeeeee-eeeee-------------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 66666664 34441 11245789999999999999999999987653
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.3e-16 Score=124.14 Aligned_cols=297 Identities=14% Similarity=0.162 Sum_probs=185.5
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc
Q 016032 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 100 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 100 (396)
-.+..++|++.- .-+|++..|-.|++|+-.. .....+...-...|+|++|-|.....|+.|+..| |.+|.....-..
T Consensus 99 ~dlr~~aWhqH~-~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhh-hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 357789999965 4588899999999999877 4444444456678999999999777788888654 899987643221
Q ss_pred ce----eecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCC
Q 016032 101 SL----MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 175 (396)
Q Consensus 101 ~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 175 (396)
.. ...+......+.....|++|+|.++|..+++++- +..|.+||..++....-. ....+.+.-+.|+| ++.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSP-dgd 251 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSP-DGD 251 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcC-CCC
Confidence 11 1111111111122256999999999999998864 568999999997654322 23344688999999 999
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccc----cCCCc--ceee
Q 016032 176 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL----DSPSR--EIVH 249 (396)
Q Consensus 176 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~--~~~~ 249 (396)
+|++++-|+..++|+....-.. ....-..+.|...+|+|+|++|+.++. |.-++|.+..... ..+.. ....
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~--erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTK--ERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred EEEEecccceeeeehhccccee--cceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeee
Confidence 9999999999999965432221 111224558999999999998765553 3445665543221 11000 0110
Q ss_pred ccccc------c----cCCceeEEeCCCCCCCceeeEeeeeeeeccccc-----ccceEEEEcCccchhhh-----hcCC
Q 016032 250 SHDFN------R----HLTPFRAEWDPKDPSESLAVIGRYISENYNGAA-----LHPIDFIDITTGQLVAE-----VMDP 309 (396)
Q Consensus 250 ~~~~~------~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-----d~~i~vwd~~~~~~~~~-----~~~~ 309 (396)
..+.. + ...+-+++|+|. |.|++..+-|.. -..|.+||....-.+.- ..+.
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDps---------GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge 399 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPS---------GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGE 399 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCC---------CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCC
Confidence 00100 0 112246899998 777776554443 34567777654332221 1122
Q ss_pred CCCCCcceeeecc---CCcEEEeec-CCcEEEEcC
Q 016032 310 NITTISPVNKLHP---RDDVLASGS-SRSIFIWRP 340 (396)
Q Consensus 310 ~~~~i~~~~~~~~---~~~~l~sg~-d~~i~iw~~ 340 (396)
+ -..++|+| ++++|..+- .|.+.-|.+
T Consensus 400 ~----P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 400 Y----PAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred C----CceEEeeecccCCcEEEEEeccCceEeeee
Confidence 2 11225665 456666665 688777765
No 199
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=8.6e-18 Score=141.04 Aligned_cols=218 Identities=18% Similarity=0.209 Sum_probs=153.6
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc---------eeeeEecCCcccceeEEEEecCCCcEE
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV---------SEKIVYGNIHSCIVNNIRFNPTNDGTV 80 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~l 80 (396)
..++.+|++|.++|.|+++.+.+ ..+++|+.||+|+.|++... ........||.+.|..+++++. ...|
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~L 411 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRL 411 (577)
T ss_pred eeeeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccce
Confidence 45678999999999999999998 68999999999999966421 1222333789999999999998 8889
Q ss_pred EEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccc----e
Q 016032 81 YAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEA----I 155 (396)
Q Consensus 81 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~----~ 155 (396)
++++.||+++.|+...... ..+...... ....++.+.... ...++....+.-.++++......... .
T Consensus 412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~-------g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESP-CTFGEPKEH-------GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred eeecCCceEEeeccCCcCc-cccCCcccc-------CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 9999999999999876665 333222111 114445553332 22222233333333343332221100 0
Q ss_pred eeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 156 LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 156 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
........+.-+.++| ...+.+++..|+.|+++|..++...... ..|...++++++.|+|.+|++++.|+.+++|.+
T Consensus 484 ~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~--~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSM--VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CcccccCccceEEecC-CCCeeEecccCCceecccccccccchhe--eeccceecceeecCCCceEEeecCCceeehhhc
Confidence 0111123577888999 8899999999999999999875553222 368899999999999999999999999999998
Q ss_pred ccccc
Q 016032 236 IFGNL 240 (396)
Q Consensus 236 ~~~~~ 240 (396)
....+
T Consensus 561 d~k~~ 565 (577)
T KOG0642|consen 561 DVKTC 565 (577)
T ss_pred cchhe
Confidence 75544
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.1e-15 Score=131.16 Aligned_cols=260 Identities=12% Similarity=0.163 Sum_probs=159.0
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccc-ceeeeEecCCcccceeEEEEecCCCcEEEEEeC-CCeE
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTV 89 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v 89 (396)
.+..+. +.+....++++|+++.+++++..++.|.+|++.. +................++|+|+ +++|++++. ++.|
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~-g~~l~v~~~~~~~v 104 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQ-GRFLFSASYNANCV 104 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCC-CCEEEEEEcCCCeE
Confidence 334443 4466788999999954334445688999999973 22211111113345678999999 777777664 8899
Q ss_pred EEEECCCCc-ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe-cCCeEEEEeCCCCCCCcc----ceeeecCCcc
Q 016032 90 SCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGE----AILIHRKGSK 163 (396)
Q Consensus 90 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~i~d~~~~~~~~~----~~~~~~~~~~ 163 (396)
.+|++.+.. ......... +. ....+++++|+++++++++ .++.|.+||+........ .... ..+..
T Consensus 105 ~v~~~~~~g~~~~~~~~~~----~~---~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~ 176 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQIIE----GL---EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAG 176 (330)
T ss_pred EEEEECCCCCCCCceeecc----CC---CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCC
Confidence 999997432 211111100 00 1256788999999886654 568999999976432211 0111 12335
Q ss_pred EEEEEeccCCCCEEEEeeC-CCcEEEEecCCCC-CCCcccc---C----CCCCceeEEEEcCCCCEEEEEeC-CCcEEEE
Q 016032 164 VVGLHCNPIQPELLLSCGN-DHFARIWDIRRLE-AGSSLCD---L----PHKRVVNSAYFSPSGSKILTTSQ-DNRLRIW 233 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~-~~~~~~~---~----~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iw 233 (396)
...++|+| ++.+++++.. ++.|.+|++.... ....+.. . .+......+.++|++++|+++.. ++.|.+|
T Consensus 177 p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~ 255 (330)
T PRK11028 177 PRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVF 255 (330)
T ss_pred CceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence 67899999 8898877766 8999999997321 1111111 1 11223346899999999998864 7899999
Q ss_pred EcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 234 DSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 234 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
++....... ....... ....+..+.++|+ |+++.. +...+++|.+|++.
T Consensus 256 ~i~~~~~~~---~~~~~~~--~~~~p~~~~~~~d---------g~~l~v--a~~~~~~v~v~~~~ 304 (330)
T PRK11028 256 SVSEDGSVL---SFEGHQP--TETQPRGFNIDHS---------GKYLIA--AGQKSHHISVYEID 304 (330)
T ss_pred EEeCCCCeE---EEeEEEe--ccccCCceEECCC---------CCEEEE--EEccCCcEEEEEEc
Confidence 996532110 0000000 0122335677887 777763 23457899999874
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2.1e-17 Score=129.92 Aligned_cols=140 Identities=12% Similarity=0.086 Sum_probs=105.4
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceee
Q 016032 25 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 104 (396)
Q Consensus 25 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 104 (396)
-++|||+| +++|+.+.- .+.|-|..+.+....+. .-..|..+.|..+.-..|.....++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g-~yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCG-NYIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCC-Ceeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 36899999 789998865 78888888776655554 456788999998844455566778999999999888777776
Q ss_pred cCCCCCCCCCcceeeeEEEeCCCCCEEEE-EecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC
Q 016032 105 VNPNGWHGPRTWRMLYGMDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 182 (396)
Q Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 182 (396)
..+.+ +.+++|+|+|+.++. ..-+-.|.+|.+.+.+... +....+ .+..++|+| ++++.+.++.
T Consensus 89 eg~ag---------ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~--~~kg~~f~~-dg~f~ai~sR 153 (447)
T KOG4497|consen 89 EGQAG---------LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKT--NVKGYAFHP-DGQFCAILSR 153 (447)
T ss_pred cCCCc---------ceeeeECCCcceEeeeecceeEEEEEEeccceeEE--eccccc--CceeEEECC-CCceeeeeec
Confidence 65544 889999999966655 5567799999998855332 122223 568899999 9998887765
No 202
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=2.1e-16 Score=124.33 Aligned_cols=291 Identities=15% Similarity=0.192 Sum_probs=184.6
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc
Q 016032 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 100 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 100 (396)
+.|.-+.|..+.-.+|.....++.|.+|++...+-...+ .....++.+++|+|++...|.+...+-.|.+|.+.+....
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 568889999888555666778899999999988777666 4567789999999995577788888999999999987654
Q ss_pred ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEe
Q 016032 101 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC 180 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 180 (396)
... .+.. .+..++|+|+|++.+..++....-.+.+...+.-.-+..........+.+.|+| +++.|+
T Consensus 128 ~~~-~pK~---------~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~la-- 194 (447)
T KOG4497|consen 128 LLP-HPKT---------NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLA-- 194 (447)
T ss_pred Eec-cccc---------CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEE--
Confidence 432 1111 167899999999999887653222222211110000001112223578899999 777655
Q ss_pred eCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccC------------------
Q 016032 181 GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS------------------ 242 (396)
Q Consensus 181 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------------ 242 (396)
+||.- ....+......-.+..++|+|.+++|++|+.|+.+++.+--+.+...
T Consensus 195 -------Vwd~~---Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 195 -------VWDNV---LEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK 264 (447)
T ss_pred -------Eecch---hhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence 45531 11111122334568899999999999999999999987655433210
Q ss_pred ----------------C---------Cccee--------ec------ccc-cccCCceeEEeCCCCCCCceeeEeeeeee
Q 016032 243 ----------------P---------SREIV--------HS------HDF-NRHLTPFRAEWDPKDPSESLAVIGRYISE 282 (396)
Q Consensus 243 ----------------~---------~~~~~--------~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 282 (396)
| ..+.. .. ..+ +.....-.++|+++ ..|++.
T Consensus 265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D---------s~y~aT 335 (447)
T KOG4497|consen 265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD---------STYAAT 335 (447)
T ss_pred hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCC---------ceEEee
Confidence 0 00000 00 000 00011112455555 455542
Q ss_pred ecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeee
Q 016032 283 NYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVE 348 (396)
Q Consensus 283 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~ 348 (396)
. ....-+.+-+||++..++...+... .+|... .|+|....|+.+. ...+++|.+.....+..
T Consensus 336 r-nd~~PnalW~Wdlq~l~l~avLiQk--~piraf-~WdP~~prL~vctg~srLY~W~psg~~~V~v 398 (447)
T KOG4497|consen 336 R-NDKYPNALWLWDLQNLKLHAVLIQK--HPIRAF-EWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV 398 (447)
T ss_pred e-cCCCCceEEEEechhhhhhhhhhhc--cceeEE-EeCCCCceEEEEcCCceEEEEcCCCceEEec
Confidence 1 3345577999999988887776554 345555 7999998888776 78899998776544443
No 203
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=8.7e-18 Score=143.15 Aligned_cols=206 Identities=17% Similarity=0.246 Sum_probs=151.1
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce------eeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS------EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
...|+.+.|.|-.+..||.++.||.|++|.+..+. .......+|...|+++.|+|-..+.|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 45699999999877789999999999999997542 122333679999999999998788999999999999999
Q ss_pred CCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCC
Q 016032 94 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 173 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 173 (396)
+.++.....+..+... |..++|+|+|+.+++.+.||.|++|..++.......-... .+..-..+.|.- +
T Consensus 707 l~~~~~~~~l~gHtdq---------If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp-vgtRgARi~wac-d 775 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQ---------IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP-VGTRGARILWAC-D 775 (1012)
T ss_pred hhhhhhhheeccCcCc---------eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC-ccCcceeEEEEe-c
Confidence 9999888887666554 9999999999999999999999999999876543221111 112344566766 8
Q ss_pred CCEEEEeeCC----CcEEEEecCCCCCCCccccC--CCCCceeEEEEcCCCC-EEEEEeCCCcEEEEEccc
Q 016032 174 PELLLSCGND----HFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPSGS-KILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 174 ~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 237 (396)
+.++++.+.| ..|.+||..+.... .+... .....+.--.+.+|.. ++++|-.|..|.+|.+-.
T Consensus 776 gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~-pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQMYDAQTLDLR-PLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred CcEEEEecccccchhhhhhhhhhhccCC-cceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 8888877765 46888987654321 12111 1111122223455444 567888899999998854
No 204
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=5.7e-17 Score=130.82 Aligned_cols=223 Identities=16% Similarity=0.229 Sum_probs=145.1
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecc--------c-----c--eeeeEecCCcccceeEEEEecCC
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFY--------K-----V--SEKIVYGNIHSCIVNNIRFNPTN 76 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~ 76 (396)
-+..|..|..+|+++.|+|+| .+||+|+.+|.|.+|... + . ..+.....+|...|+.++|+|+
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d- 134 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD- 134 (434)
T ss_pred EeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-
Confidence 346788999999999999999 589999999999999876 2 1 1233344679999999999999
Q ss_pred CcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCC-------------------------------------------
Q 016032 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP------------------------------------------- 113 (396)
Q Consensus 77 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~------------------------------------------- 113 (396)
+.++++++.|..+++||+..|+.......+....++.
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~ 214 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFN 214 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccC
Confidence 9999999999999999999998776654433221100
Q ss_pred -------------CcceeeeEEEeCCCCCEEEEEec----CC-----eEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 114 -------------RTWRMLYGMDINPEKGVVLVADN----FG-----FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 114 -------------~~~~~v~~~~~~~~~~~l~~~~~----~g-----~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
........++|+|+|.++++... .+ ..++++-...+... ........+...+.++|
T Consensus 215 ~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~--~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 215 EREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA--ARLPSPKKPALAVRFSP 292 (434)
T ss_pred CCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce--eecCCCCcceEEEEeee
Confidence 00001222355566665555321 11 12233222111110 01111111233333333
Q ss_pred C-----------------CCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 016032 172 I-----------------QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234 (396)
Q Consensus 172 ~-----------------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 234 (396)
. -...++.++ ...|++||..+..+...+.. -|-..|+.++|+++|..|+..+.||...+.-
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vt 370 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVT 370 (434)
T ss_pred eEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEE
Confidence 1 223445554 46899999876544333332 3778999999999999999999999999988
Q ss_pred cccccc
Q 016032 235 SIFGNL 240 (396)
Q Consensus 235 ~~~~~~ 240 (396)
++..++
T Consensus 371 fe~~el 376 (434)
T KOG1009|consen 371 FEPWEL 376 (434)
T ss_pred Ecchhc
Confidence 877665
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=1.4e-17 Score=136.63 Aligned_cols=199 Identities=18% Similarity=0.212 Sum_probs=163.3
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 99 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 99 (396)
.-.-..+.++.+| +.|+.|+..|.+..+|..+......+. -...|.++.|..+ .++++++- ...+.|||-. |..
T Consensus 129 eFGPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHn-eq~~AVAQ-K~y~yvYD~~-GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHN-EQFFAVAQ-KKYVYVYDNN-GTE 202 (545)
T ss_pred ccCCeeeeecCCc-cEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcc-hHHHHhhh-hceEEEecCC-CcE
Confidence 3456788999999 688889999999999999988777764 6678999999987 66666654 6789999954 555
Q ss_pred cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEE
Q 016032 100 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 179 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 179 (396)
++.++.... +..+.|-|..-+|++++..|.+.--|+.+++.+..+. ...+.+..++-+| -+..+-+
T Consensus 203 lHClk~~~~----------v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~qNP-~NaVih~ 268 (545)
T KOG1272|consen 203 LHCLKRHIR----------VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMKQNP-YNAVIHL 268 (545)
T ss_pred EeehhhcCc----------hhhhcccchhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhhcCC-ccceEEE
Confidence 555544322 8889999999999999999999999999998876543 3334688889999 7888999
Q ss_pred eeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 180 CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 180 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
|...|+|.+|.....++ .+..+.|.++|.++++.++|.+++|.+.|..++|||++....
T Consensus 269 GhsnGtVSlWSP~skeP--LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEP--LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred cCCCceEEecCCCCcch--HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence 99999999999876444 344457999999999999999999999999999999997664
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=1.9e-16 Score=124.08 Aligned_cols=216 Identities=15% Similarity=0.184 Sum_probs=162.2
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce--eeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
..+.--..+|+|.+|++|. ..+|.+.....|.||...... .....+..|...|+.++|+|. .+.|++|+.|..-++
T Consensus 4 ~~~~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayV 81 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYV 81 (361)
T ss_pred EEeeeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-CCceeEccCCCCccc
Confidence 3444456799999999998 578999889999999987754 333344779999999999999 999999999999999
Q ss_pred EEC-CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccce-eeecCCccEEEEEe
Q 016032 92 TDL-ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI-LIHRKGSKVVGLHC 169 (396)
Q Consensus 92 wd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~i~~~~~ 169 (396)
|.. ..++-...+.+- ......+++.|+|..+.|++|+....|.+|-.+....-.... ........|+++.|
T Consensus 82 w~~~~~~~WkptlvLl-------RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLL-------RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred cccCCCCeeccceeEE-------EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 998 444433322211 111338999999999999999999999998877643321100 11123347999999
Q ss_pred ccCCCCEEEEeeCCCcEEEEecC-----CCC----------CCCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEE
Q 016032 170 NPIQPELLLSCGNDHFARIWDIR-----RLE----------AGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233 (396)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~wd~~-----~~~----------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 233 (396)
+| ++-++++|+.|+..+++..- ... .+..+... ...+.|..+.|+|+|..|+-.+.|..+.+-
T Consensus 155 hp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 155 HP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred cC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 99 99999999999999998642 110 11222222 356789999999999999999999999999
Q ss_pred Eccccc
Q 016032 234 DSIFGN 239 (396)
Q Consensus 234 d~~~~~ 239 (396)
|.....
T Consensus 234 da~~p~ 239 (361)
T KOG1523|consen 234 DAAGPS 239 (361)
T ss_pred ecCCCc
Confidence 887654
No 207
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.7e-16 Score=129.27 Aligned_cols=283 Identities=14% Similarity=0.164 Sum_probs=192.5
Q ss_pred cccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCC
Q 016032 18 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG 97 (396)
Q Consensus 18 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 97 (396)
+|...-+.|..+|||..++|||-..-.|++||+.+......-. -....|.-.-.+.+ -..++.-..|.+|-+...- |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-lDae~V~feiLsDD-~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-LDAEVVDFEILSDD-YSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-ccccceeEEEeccc-hhhheEeecCceeeehhhc-C
Confidence 4788899999999998888999999999999998866554431 12334444444444 5556666668888765432 2
Q ss_pred cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEE
Q 016032 98 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
.. ..+..+. .-..++++.-..-|++++....|+-+++..+..+... ....+.++++..++ ...+|
T Consensus 126 ~h-y~~RIP~----------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~-~hgLl 190 (703)
T KOG2321|consen 126 RH-YRTRIPK----------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF---ETDSGELNVVSINE-EHGLL 190 (703)
T ss_pred ee-eeeecCc----------CCccccccCCCccEEEeecCcceEEEEcccccccccc---ccccccceeeeecC-ccceE
Confidence 21 1222221 1345555544444666666778999999998766432 33335799999999 88899
Q ss_pred EEeeCCCcEEEEecCCCCCCCccccC----CCC-----CceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCccee
Q 016032 178 LSCGNDHFARIWDIRRLEAGSSLCDL----PHK-----RVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIV 248 (396)
Q Consensus 178 ~~~~~d~~i~~wd~~~~~~~~~~~~~----~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 248 (396)
++|+.+|.|..||.+..+....+... .|. ..|+++.|+.+|-.+++|+.+|.+.|||+++.+.+.
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~------ 264 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL------ 264 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee------
Confidence 99999999999999875443322211 122 349999999999999999999999999999876532
Q ss_pred ecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEE
Q 016032 249 HSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 328 (396)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 328 (396)
............+.|.+.+.... ++ ......++|||-.+|+....+.... .+..+ ++-|++-+++
T Consensus 265 -~kdh~~e~pi~~l~~~~~~~q~~-------v~----S~Dk~~~kiWd~~~Gk~~asiEpt~--~lND~-C~~p~sGm~f 329 (703)
T KOG2321|consen 265 -VKDHGYELPIKKLDWQDTDQQNK-------VV----SMDKRILKIWDECTGKPMASIEPTS--DLNDF-CFVPGSGMFF 329 (703)
T ss_pred -ecccCCccceeeecccccCCCce-------EE----ecchHHhhhcccccCCceeeccccC--CcCce-eeecCCceEE
Confidence 23333444445678877632211 11 2445679999999999887765432 35555 7789999999
Q ss_pred eec-CCcEEEEc
Q 016032 329 SGS-SRSIFIWR 339 (396)
Q Consensus 329 sg~-d~~i~iw~ 339 (396)
++. ++.+..|=
T Consensus 330 ~Ane~~~m~~yy 341 (703)
T KOG2321|consen 330 TANESSKMHTYY 341 (703)
T ss_pred EecCCCcceeEE
Confidence 988 66655553
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=1.4e-16 Score=133.20 Aligned_cols=263 Identities=16% Similarity=0.231 Sum_probs=169.9
Q ss_pred cccCCeEEEEecCCCCcEEEEEeCCCcEEEe-ecccceeeeEecCCccccee-EEEEecC------CCcEEEEEeCCCeE
Q 016032 18 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVW-DFYKVSEKIVYGNIHSCIVN-NIRFNPT------NDGTVYAASSDGTV 89 (396)
Q Consensus 18 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~v~-~~~~~~~------~~~~l~s~~~dg~v 89 (396)
-|...|.|+.|+... .++.+++ |..+.+| ++.+.. ...... ....|. .+..-+. +.+.|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~~e-ei~~~~d-Dh~~~~~~~~~~~s-~~~~~~-p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNE-EIYFVSD-DHQIFKWSDVSRDS-VEVAKL-PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccc-eEEEecc-CceEEEeecccchh-hhhhhC-CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 578888999999877 4555555 5555555 444332 211111 111111 1111111 14678888999999
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEe
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 169 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 169 (396)
.+.+- .++....+..+. ..+.+-.|+|+|.-|++++.||.|++|.-...-. . .......+|.|++|
T Consensus 88 ~il~k-~~rVE~sv~AH~---------~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR--S--tl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 88 VILNK-SARVERSISAHA---------AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR--S--TVVQNEESIRCARW 153 (737)
T ss_pred EEecc-cchhhhhhhhhh---------hhhhhcccCCCCceeeeecCCceEEEEeccchHH--H--HHhhcCceeEEEEE
Confidence 98873 455555554333 2388889999999999999999999998654221 1 11223347999999
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceee
Q 016032 170 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVH 249 (396)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 249 (396)
.|...+.+++.+ +.+.+=.+.. ....++...|.+-|.++.|++...++++|+.|-..++||-....+....
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~--n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~----- 224 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAA--NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSA----- 224 (737)
T ss_pred CCCCCceEEecC--CeEEEeeccc--ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCC-----
Confidence 995455555544 4566655542 2345555589999999999999999999999999999998654432211
Q ss_pred cccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEe
Q 016032 250 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLAS 329 (396)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s 329 (396)
.......+++|+|+ ..| -+|...+.+ +..+..+.|..+ +||+||..++.
T Consensus 225 ----~~ey~ITSva~npd---------~~~-------------~v~S~nt~R----~~~p~~GSifnl-sWS~DGTQ~a~ 273 (737)
T KOG1524|consen 225 ----AEEYAITSVAFNPE---------KDY-------------LLWSYNTAR----FSSPRVGSIFNL-SWSADGTQATC 273 (737)
T ss_pred ----hhccceeeeeeccc---------cce-------------eeeeeeeee----ecCCCccceEEE-EEcCCCceeec
Confidence 11112237889987 111 133333332 555666788888 99999999999
Q ss_pred ec-CCcEEEE
Q 016032 330 GS-SRSIFIW 338 (396)
Q Consensus 330 g~-d~~i~iw 338 (396)
|. .|.+.+=
T Consensus 274 gt~~G~v~~A 283 (737)
T KOG1524|consen 274 GTSTGQLIVA 283 (737)
T ss_pred cccCceEEEe
Confidence 88 7776653
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=7e-18 Score=147.88 Aligned_cols=252 Identities=19% Similarity=0.223 Sum_probs=185.7
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
.+|...|+|+.|... +.++++|+.|..++||.++++.++.....+... ++.++.+.+..++++++.|..|
T Consensus 187 lgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d---------itdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGD---------ITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred Hhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccc---------cchhccchhhhhhhhcccCceE
Confidence 479999999999998 999999999999999999999998887655443 8999999999999999999999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccc---cCCCCCceeEEEEcCC
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC---DLPHKRVVNSAYFSPS 217 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 217 (396)
++|-+..+..+. ...+|.+.|++++|+| ..+.+.||++++||.+- ....... .+.....+.++.|..+
T Consensus 257 rvWrl~~~~pvs---vLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 257 RVWRLPDGAPVS---VLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENN 327 (1113)
T ss_pred EEEecCCCchHH---HHhccccceeeeccCc-----cccCCCCCceEeccccc-cccccCCCCCCcccccceeeeecccc
Confidence 999999987664 3355666899999999 33778999999999872 1111110 1123456778888888
Q ss_pred CCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 218 GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 218 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
+.-+++++.|+....|.+..-..... .+.|....... ..+.. +.-.+-.+.+|++
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~~~~~-----------------~lif~t~ssd~-----~~~~~---~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLAWRSN-----------------LLIFVTRSSDL-----SSIVV---TARNDHRLCVWNL 382 (1113)
T ss_pred ccccccccCCcccccchhhHhhhhcc-----------------ceEEEeccccc-----cccce---eeeeeeEeeeeec
Confidence 99999999999999987753221100 11111110000 11112 3456677899999
Q ss_pred CccchhhhhcCCCCCCCcceeeeccCCcEEEe-ec-CCcEEEEcCCCcceeeec-cccceEEEe
Q 016032 298 TTGQLVAEVMDPNITTISPVNKLHPRDDVLAS-GS-SRSIFIWRPKEKSELVEQ-KEEMKIIVC 358 (396)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s-g~-d~~i~iw~~~~~~~~~~~-~~~~~~~~~ 358 (396)
.+|.+...+.+|. .....+ .+||-...++- ++ ||...|||+-.|.+++.. .+|...+.|
T Consensus 383 ~~g~l~H~l~ghs-d~~yvL-d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~ 444 (1113)
T KOG0644|consen 383 YTGQLLHNLMGHS-DEVYVL-DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDG 444 (1113)
T ss_pred ccchhhhhhcccc-cceeee-eecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeecc
Confidence 9999999888886 566666 89998877664 66 999999999988776554 344444333
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.6e-15 Score=118.86 Aligned_cols=239 Identities=13% Similarity=0.164 Sum_probs=154.2
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcc--cceeEEEEecCCCcEEEE-EeCC------CeEEEE
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHS--CIVNNIRFNPTNDGTVYA-ASSD------GTVSCT 92 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~s-~~~d------g~v~iw 92 (396)
...+++|+.|. ..+++|..+ -.+||+.+.-...... +.+. -.+..+-|- .++|+- |+.. ..|.||
T Consensus 7 ~~lsvs~NQD~-ScFava~~~-Gfriyn~~P~ke~~~r-~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDH-SCFAVATDT-GFRIYNCDPFKESASR-QFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCC-ceEEEEecC-ceEEEecCchhhhhhh-ccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEE
Confidence 35569999997 467776655 5999998763332221 1122 223333333 344443 3332 469999
Q ss_pred ECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC
Q 016032 93 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 172 (396)
|=....++..+..... |.++.+.++. |++. ..+.|++|...........+..........+++-..
T Consensus 81 DD~k~~~i~el~f~~~----------I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~- 146 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSE----------IKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS- 146 (346)
T ss_pred ecccCcEEEEEEeccc----------eeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-
Confidence 9666666666655433 8888887653 3333 457899999875433322222222222344444333
Q ss_pred CCCEEEE-eeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecc
Q 016032 173 QPELLLS-CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSH 251 (396)
Q Consensus 173 ~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 251 (396)
+..+||. |-.-|.|+|-|+.......+....+|...|.|++.+.+|.++|++|..|++
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL--------------------- 205 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL--------------------- 205 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE---------------------
Confidence 4445554 445799999999876654344445899999999999999999999988864
Q ss_pred cccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcC-CCCCCCcceeeeccCCcEEEee
Q 016032 252 DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMD-PNITTISPVNKLHPRDDVLASG 330 (396)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~sg 330 (396)
|+|||..+|+++.++.. -....++++ +|||+..+|+++
T Consensus 206 ----------------------------------------IRIFdt~~g~~l~E~RRG~d~A~iy~i-aFSp~~s~Lavs 244 (346)
T KOG2111|consen 206 ----------------------------------------IRIFDTEDGTLLQELRRGVDRADIYCI-AFSPNSSWLAVS 244 (346)
T ss_pred ----------------------------------------EEEEEcCCCcEeeeeecCCchheEEEE-EeCCCccEEEEE
Confidence 55555556666666553 334677888 899999999999
Q ss_pred c-CCcEEEEcCCC
Q 016032 331 S-SRSIFIWRPKE 342 (396)
Q Consensus 331 ~-d~~i~iw~~~~ 342 (396)
+ -|+|.|+.+..
T Consensus 245 SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 245 SDKGTLHIFSLRD 257 (346)
T ss_pred cCCCeEEEEEeec
Confidence 9 59999998765
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.5e-15 Score=113.47 Aligned_cols=204 Identities=19% Similarity=0.267 Sum_probs=148.4
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceee-------eEecCCc-----ccceeEEEEecCCC
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-------IVYGNIH-----SCIVNNIRFNPTND 77 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~-----~~~v~~~~~~~~~~ 77 (396)
+..+...++|.++|+.++|+. .+|++|+ ||.|+=|........ ....+-| -..|+++-..|. .
T Consensus 52 k~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~-e 126 (325)
T KOG0649|consen 52 KLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-E 126 (325)
T ss_pred CcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC-C
Confidence 344556699999999999983 4677776 599999987653221 0111112 246889999998 6
Q ss_pred cEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceee
Q 016032 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI 157 (396)
Q Consensus 78 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~ 157 (396)
+.++.++.|+.++.||+++|+....++.+.+. +.++.--.....+++|+.||++++||.++.+....+-..
T Consensus 127 nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY---------vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLEDGRIQREYRGHTDY---------VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred CcEEEecCCeEEEEEEecCCEEEEEEcCCcce---------eeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 66666668999999999999999998766554 888888666778999999999999999998765322111
Q ss_pred -------ecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcE
Q 016032 158 -------HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRL 230 (396)
Q Consensus 158 -------~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 230 (396)
..-+..|.+++. +..++++|+. ..+.+|++++.+....+ .....+..+.|. ...+++++..+.+
T Consensus 198 k~~~~lRp~~g~wigala~---~edWlvCGgG-p~lslwhLrsse~t~vf---pipa~v~~v~F~--~d~vl~~G~g~~v 268 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALAV---NEDWLVCGGG-PKLSLWHLRSSESTCVF---PIPARVHLVDFV--DDCVLIGGEGNHV 268 (325)
T ss_pred cChhhcCcccCceeEEEec---cCceEEecCC-CceeEEeccCCCceEEE---ecccceeEeeee--cceEEEeccccce
Confidence 112335667766 4578888764 68999999986654443 456678888884 4577888888889
Q ss_pred EEEEcc
Q 016032 231 RIWDSI 236 (396)
Q Consensus 231 ~iwd~~ 236 (396)
.-|.+.
T Consensus 269 ~~~~l~ 274 (325)
T KOG0649|consen 269 QSYTLN 274 (325)
T ss_pred eeeeec
Confidence 999875
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2.6e-16 Score=139.14 Aligned_cols=235 Identities=16% Similarity=0.182 Sum_probs=153.4
Q ss_pred CCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC---CeEEEEECCCCcccceeecCCCCCCCCCccee
Q 016032 42 KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRM 118 (396)
Q Consensus 42 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (396)
+..|.+||........ + ..|...+..++|+|+ ++.|+.++.+ ..|.+||+.+++........ ++
T Consensus 183 ~~~i~i~d~dg~~~~~-l-t~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-----g~----- 249 (429)
T PRK01742 183 PYEVRVADYDGFNQFI-V-NRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-----GH----- 249 (429)
T ss_pred eEEEEEECCCCCCceE-e-ccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----Cc-----
Confidence 4689999997765433 3 347788999999999 8888777643 47999999887643322111 11
Q ss_pred eeEEEeCCCCCEEEEEe-cCCeEE--EEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee-CCCcEEEEecCCC
Q 016032 119 LYGMDINPEKGVVLVAD-NFGFLY--LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHFARIWDIRRL 194 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~-~~g~i~--i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~ 194 (396)
....+|+|+|+.|+.+. .+|.+. +||+.++.. .....+...+....|+| ++..|+..+ .++...||++...
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~----~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP----SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe----EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 34678999999888764 577554 556655432 12233344678899999 888766554 5788888887542
Q ss_pred CCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCcee
Q 016032 195 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA 274 (396)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (396)
...... +.+.. ..+.|+|+|++|+..+.++ +.+||+.+++..... .... .....|+|+
T Consensus 325 ~~~~~~--l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt------~~~~----~~~~~~sPd------- 382 (429)
T PRK01742 325 GGGASL--VGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS------STFL----DESPSISPN------- 382 (429)
T ss_pred CCCeEE--ecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec------CCCC----CCCceECCC-------
Confidence 221111 22332 4578999999998887764 666999887642111 0111 124678998
Q ss_pred eEeeeeeeecccccccceEEEEc--CccchhhhhcCCCCCCCcceeeeccC
Q 016032 275 VIGRYISENYNGAALHPIDFIDI--TTGQLVAEVMDPNITTISPVNKLHPR 323 (396)
Q Consensus 275 ~~g~~~~~~~~g~~d~~i~vwd~--~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (396)
|++++ .++.++.+.+|.+ .+|+.+..+..+. ..+... +|+|-
T Consensus 383 --G~~i~---~~s~~g~~~~l~~~~~~G~~~~~l~~~~-g~~~~p-~wsp~ 426 (429)
T PRK01742 383 --GIMII---YSSTQGLGKVLQLVSADGRFKARLPGSD-GQVKFP-AWSPY 426 (429)
T ss_pred --CCEEE---EEEcCCCceEEEEEECCCCceEEccCCC-CCCCCc-ccCCC
Confidence 77777 4556777777775 3577777776655 455555 78875
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.1e-16 Score=126.12 Aligned_cols=215 Identities=13% Similarity=0.090 Sum_probs=165.1
Q ss_pred ccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce----eeeEecCCcccceeEEEEecCCCcEEEEEeCC--CeEE
Q 016032 17 RYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--GTVS 90 (396)
Q Consensus 17 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~v~ 90 (396)
..-+.+|-.++... + .|++|-.+|.+.+|....+. .+..+ .....+..+.-++.....+++|+.. ..+.
T Consensus 102 ~l~~~~I~gl~~~d-g--~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 102 SLGTKSIKGLKLAD-G--TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred ccccccccchhhcC-C--EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhccccee
Confidence 44456666666653 3 58888899999999987432 22222 1335677777777756667779988 8899
Q ss_pred EEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC--CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 91 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
+||++..+.+..-+..+...-+...+..++++.|-+. ...|++++.-+.+++||.+.+..+...+....+ +++++.
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~--~is~~~ 254 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN--PISSTG 254 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC--cceeee
Confidence 9999988666655544444444455556888999888 889999999999999999987765544444444 799999
Q ss_pred eccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 169 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
..| .++++++|..-+.+..||++.+....+.. -+..+.|.++..+|.+.+|++++-|..++|+|+.+.++
T Consensus 255 l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 255 LTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGL-KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ecC-CCcEEEEecccchhheecccCceeecccc-CCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 999 99999999999999999999766544321 25788999999999999999999999999999998665
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=2e-15 Score=118.41 Aligned_cols=244 Identities=11% Similarity=0.151 Sum_probs=166.3
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc---cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCe
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGF 139 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 139 (396)
-..+|+|.+|+++ ...++.+.....|.||.....+. .+++..+. ..++.++|+|..+.|++++.|..
T Consensus 9 ~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---------~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 9 LLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---------KIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred ccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhC---------cceeEEeecCCCCceeEccCCCC
Confidence 4578999999999 99999999999999999887662 33333222 23899999999999999999999
Q ss_pred EEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccc--cCCCCCceeEEEEcCC
Q 016032 140 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC--DLPHKRVVNSAYFSPS 217 (396)
Q Consensus 140 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~i~~~~~~~~ 217 (396)
-++|....+..-.............+++.|+| .++.|++|+....|.||-+.....--.-+ ...+...|+++.|+|+
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 99999965544444445555666899999999 99999999999999999876533221111 1246778999999999
Q ss_pred CCEEEEEeCCCcEEEEEcccccccC-----------CCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeeccc
Q 016032 218 GSKILTTSQDNRLRIWDSIFGNLDS-----------PSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG 286 (396)
Q Consensus 218 ~~~l~~~~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g 286 (396)
+-+|++|+.|+..++|..--..... |..++..... ....-...+.|+|. |..++ -.
T Consensus 158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~s---------G~~la---wv 224 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPS---------GNRLA---WV 224 (361)
T ss_pred cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCC---------CCEee---Ee
Confidence 9999999999999999764322211 1111111110 11111235777776 66666 45
Q ss_pred ccccceEEEEcCccc-hhhhhcCCCCCCCcceeeeccCCcEEEeecC
Q 016032 287 AALHPIDFIDITTGQ-LVAEVMDPNITTISPVNKLHPRDDVLASGSS 332 (396)
Q Consensus 287 ~~d~~i~vwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~d 332 (396)
+.|+.+.+-|..... .+..+.... -+..++ .|-.+...++.|-|
T Consensus 225 ~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~-~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGPSERVQSVATAQ-LPLLSV-SWISENSVVAAGYD 269 (361)
T ss_pred cCCCceEEeecCCCchhccchhhcc-CCceee-EeecCCceeecCCC
Confidence 778888888876554 334443333 444554 34444343333334
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.2e-15 Score=122.86 Aligned_cols=267 Identities=16% Similarity=0.224 Sum_probs=177.0
Q ss_pred cccceeEEEEecCCCc-EEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEE
Q 016032 63 HSCIVNNIRFNPTNDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 141 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 141 (396)
....|..++|.-++.. .+...+.+..+..+.+...........-.. .+-....|..+.. ....|+++..+|.+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~---~~l~~~~I~gl~~--~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKT---VSLGTKSIKGLKL--ADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccc---cccccccccchhh--cCCEEEEEecCCcEE
Confidence 4467888888765333 444444777788877776655544310000 0000012333333 245688889999999
Q ss_pred EEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCC--CcEEEEecCCCCCCCcccc-------CCCCCceeEE
Q 016032 142 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND--HFARIWDIRRLEAGSSLCD-------LPHKRVVNSA 212 (396)
Q Consensus 142 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~-------~~~~~~i~~~ 212 (396)
+|..+.+............+..+..+.-++....++++|+.. ..+.+||+...+..-.-.. +.-.-+++.+
T Consensus 129 ~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred EEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence 999986543333333333445788888888778888889998 8899999976422111110 0123467889
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeeccccccc
Q 016032 213 YFSPS--GSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALH 290 (396)
Q Consensus 213 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~ 290 (396)
.|-+. ...||+++.-+.+++||.+.++. |.. ...+..+. ...+.-.|. |+++. +|..-+
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--PV~----~fd~~E~~-is~~~l~p~---------gn~Iy---~gn~~g 269 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRR--PVA----QFDFLENP-ISSTGLTPS---------GNFIY---TGNTKG 269 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCc--cee----EeccccCc-ceeeeecCC---------CcEEE---Eecccc
Confidence 99886 88999999999999999985542 222 22222111 112333343 67766 788889
Q ss_pred ceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccce
Q 016032 291 PIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
.+..||+++++.+......-.+.+..+ ..+|.+++|++++ |..+||+|+++.+++......+.
T Consensus 270 ~l~~FD~r~~kl~g~~~kg~tGsirsi-h~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~ 333 (412)
T KOG3881|consen 270 QLAKFDLRGGKLLGCGLKGITGSIRSI-HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR 333 (412)
T ss_pred hhheecccCceeeccccCCccCCcceE-EEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc
Confidence 999999999998887444444888888 7999999999999 99999999999888777655443
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.72 E-value=2e-15 Score=119.63 Aligned_cols=267 Identities=16% Similarity=0.203 Sum_probs=171.8
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee----eeEecCCc------------ccceeEEEEecCC-CcEEE
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIH------------SCIVNNIRFNPTN-DGTVY 81 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~-~~~l~ 81 (396)
-.+-|.++.|...| .+||||..+|.|.++.-..... .....+.| ...|..+.|.+++ ...++
T Consensus 24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34578999999999 5899999999999998655332 22222334 3468899998873 34567
Q ss_pred EEeCCCeEEEEECCCCcccc---------------eee------------cCCCCCCCCCcceeeeEEEeCCCCCEEEEE
Q 016032 82 AASSDGTVSCTDLETGLALS---------------LMN------------VNPNGWHGPRTWRMLYGMDINPEKGVVLVA 134 (396)
Q Consensus 82 s~~~dg~v~iwd~~~~~~~~---------------~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 134 (396)
..+.|.+|++|.+....... .++ ..+.......+..-|+++.++.|...++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 77789999999986432211 010 011111223344558899999999888776
Q ss_pred ecCCeEEEEeCCCCCCCccceeeecC-----CccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC----CCccccC--
Q 016032 135 DNFGFLYLVDARTNSRSGEAILIHRK-----GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA----GSSLCDL-- 203 (396)
Q Consensus 135 ~~~g~i~i~d~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~-- 203 (396)
. |-.|.+|+++-......+.....+ ..-|++..|+|...++|+-.+..|+|++-|+|.... .+.+...
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 4 578999998765544433332222 124889999998889999999999999999984321 1111111
Q ss_pred --------CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc-ccCCCc--cee-----ecccccccCCceeEEeCCC
Q 016032 204 --------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN-LDSPSR--EIV-----HSHDFNRHLTPFRAEWDPK 267 (396)
Q Consensus 204 --------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~ 267 (396)
+.-..|..+.|+++|+++++-+. -+|++||+.... .+.... ... ...........+.+.|+-+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 12246888999999999997654 489999995332 111000 000 0001111222357888876
Q ss_pred CCCCceeeEeeeeeeecccccccceEEEEcCcc
Q 016032 268 DPSESLAVIGRYISENYNGAALHPIDFIDITTG 300 (396)
Q Consensus 268 ~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~ 300 (396)
+.++. +|+..+..++|+...|
T Consensus 341 ---------~~~v~---TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 ---------DSYVM---TGSYNNVFRVFNLARG 361 (433)
T ss_pred ---------cceEe---cccccceEEEecCCCC
Confidence 55666 7888889999985544
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.3e-16 Score=130.74 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=126.5
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC--CCEEEEEecCC
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE--KGVVLVADNFG 138 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g 138 (396)
.||.+.|+++.|+.+ +.+|++|+.|-.+.|||.-..+.+..+.... . ..|.++.|-|. ...+++|..|.
T Consensus 47 ~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgH------t--aNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGH------T--ANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred ccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeeccc------c--cceeEEeeeccCCCeEEEeccCcc
Confidence 789999999999999 9999999999999999999888777765322 2 33999999885 67889999999
Q ss_pred eEEEEeCCCCCCC-------ccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCc-------cccC-
Q 016032 139 FLYLVDARTNSRS-------GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS-------LCDL- 203 (396)
Q Consensus 139 ~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-------~~~~- 203 (396)
.|+++|+...+.- .......-|...|..++..|..++.+.++++||+|+-+|+|....-.. +...
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999852211 111112234446888888885669999999999999999986322110 1000
Q ss_pred CCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEcc
Q 016032 204 PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 204 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 236 (396)
..--...++.++| +..+|++|+.|-..++||.+
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1123467899999 67789999999999999974
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=7.5e-16 Score=117.57 Aligned_cols=226 Identities=19% Similarity=0.188 Sum_probs=155.6
Q ss_pred CCCCCccceeeec-cccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee--------------Eec---------
Q 016032 5 HVIPDQVNCAVIR-YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI--------------VYG--------- 60 (396)
Q Consensus 5 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------~~~--------- 60 (396)
|.+++....-.++ .|...|+.+.--|++ + |.+-+.|+.+.+|++.....+. .+.
T Consensus 40 w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~-l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eql 117 (323)
T KOG0322|consen 40 WVLQTERDLPLIRLFGRLFITNLQSIPND-S-LDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQL 117 (323)
T ss_pred EEeecCccchhhhhhccceeeceeecCCc-c-hhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhh
Confidence 6666666667777 578889999999975 3 7888899999999985421110 000
Q ss_pred -----------------------------CCcccceeEEEEecCCC--cEEEEEeCCCeEEEEECCCCcccceeecCCC-
Q 016032 61 -----------------------------NIHSCIVNNIRFNPTND--GTVYAASSDGTVSCTDLETGLALSLMNVNPN- 108 (396)
Q Consensus 61 -----------------------------~~~~~~v~~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~- 108 (396)
.+..+.+.+..+....+ -++++|-.+|.+.+||+.++..+..+.....
T Consensus 118 l~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv 197 (323)
T KOG0322|consen 118 LEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV 197 (323)
T ss_pred eecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc
Confidence 01123455555433212 2456677899999999999844433322111
Q ss_pred CCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccc-eeeecCCccEEEEEeccCCCCEEEEeeCCCcEE
Q 016032 109 GWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA-ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 187 (396)
Q Consensus 109 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 187 (396)
......+..++.++.+.+.-..=++|+.+..+..|++......... .........+..+..-| ++.++|+++.|+.||
T Consensus 198 ~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiR 276 (323)
T KOG0322|consen 198 ESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIR 276 (323)
T ss_pred ccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEE
Confidence 1111222334888888876655677777788888888654221111 11122233688899999 999999999999999
Q ss_pred EEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 188 IWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 188 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
+|..++..+...+. .|...|++++|+|+..++|.++.|+.|.+|++
T Consensus 277 Vyswrtl~pLAVLk--yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 277 VYSWRTLNPLAVLK--YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeccCCchhhhh--hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999877655554 48899999999999999999999999999986
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=3.8e-15 Score=131.75 Aligned_cols=200 Identities=14% Similarity=0.125 Sum_probs=131.2
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCC---CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEE-eCCC
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKK---GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA-SSDG 87 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg 87 (396)
..+.+..|...+.+.+|+|+|. .|+..+.+ ..|++||+.++....... .......++|+|+ +..|+.+ +.+|
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~--~~g~~~~~~wSPD-G~~La~~~~~~g 270 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVAS--FRGHNGAPAFSPD-GSRLAFASSKDG 270 (429)
T ss_pred CceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEec--CCCccCceeECCC-CCEEEEEEecCC
Confidence 3456778888999999999995 56655433 469999998765433221 2223447899999 7777665 4678
Q ss_pred eEEEE--ECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe-cCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 88 TVSCT--DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 88 ~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
.+.|| |+.++... .+.... ..+....|+|+|+.|+.++ .+|...+|++.......... .+..
T Consensus 271 ~~~Iy~~d~~~~~~~-~lt~~~---------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---~~~~-- 335 (429)
T PRK01742 271 VLNIYVMGANGGTPS-QLTSGA---------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---GGRG-- 335 (429)
T ss_pred cEEEEEEECCCCCeE-eeccCC---------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---cCCC--
Confidence 66555 66555432 222111 1267789999999877654 56778888765432221111 1221
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
....|+| ++..|+..+.++ +.+||+.+++...... . .....+.|+|+|++|+.++.++.+.+|++.
T Consensus 336 ~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~--~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSS--T--FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3578999 999988887754 6669987654321111 1 123567899999999999999988888764
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.9e-14 Score=113.13 Aligned_cols=202 Identities=17% Similarity=0.214 Sum_probs=138.0
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee-------------EecCCcccceeEEEEecCCCcEEEEEeC
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI-------------VYGNIHSCIVNNIRFNPTNDGTVYAASS 85 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 85 (396)
-+..|+|++|-|.+..-|+.|+.. -|.||......... ...++| .+|+++.|.++ +..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d-gt~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED-GTILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC-CCEEeeccc
Confidence 356799999999887788888875 59999875421111 111345 78999999999 888888876
Q ss_pred -CCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 86 -DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 86 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
|..|+|||..++..+........+ +.-+.|+|++.+|++++-|+..++|......... ...-..+.|
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg---------~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e---rw~lgsgrv 283 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGG---------FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE---RWILGSGRV 283 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCc---------eeeEEEcCCCCEEEEecccceeeeehhcccceec---ceeccCCce
Confidence 678999999999887665332222 7789999999999999999999999765533222 222223389
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCc------------ccc------CC----CCCceeEEEEcCCCCEEE
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS------------LCD------LP----HKRVVNSAYFSPSGSKIL 222 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~------------~~~------~~----~~~~i~~~~~~~~~~~l~ 222 (396)
...+|+| .|.+|+.... |.-++|.+.-.+.... +.. .. ..+.+.+++|.|.|.+||
T Consensus 284 qtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 284 QTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred eeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence 9999999 7776554443 3444554321111000 000 01 246789999999999999
Q ss_pred EEeCCC--------cEEEEEccc
Q 016032 223 TTSQDN--------RLRIWDSIF 237 (396)
Q Consensus 223 ~~~~d~--------~i~iwd~~~ 237 (396)
+.-..+ .|.+||.+.
T Consensus 362 v~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 362 VIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred EEEcCCchhhhhhhhhhhhcccc
Confidence 876543 366677653
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=5.5e-15 Score=123.82 Aligned_cols=174 Identities=21% Similarity=0.242 Sum_probs=127.3
Q ss_pred CCCCCEEEEEecCCeEEEEeCCCCCCCcccee--eecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC------
Q 016032 125 NPEKGVVLVADNFGFLYLVDARTNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA------ 196 (396)
Q Consensus 125 ~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------ 196 (396)
.+.+--+++|-..|.+.+.|....... ++.. .......++++.|-|.+...++++-.+|.+++||......
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 456778999999999999998773221 1111 1222357999999998888888889999999997631100
Q ss_pred -----CC--------------ccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccccccc
Q 016032 197 -----GS--------------SLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 256 (396)
Q Consensus 197 -----~~--------------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
.. ++... -..+.|+..+|+|||++||+.+.||.++|||..+.+++...+ .+ .
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk------SY--F 332 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK------SY--F 332 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH------hh--c
Confidence 00 00000 124578899999999999999999999999999877643221 11 1
Q ss_pred CCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeec
Q 016032 257 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLH 321 (396)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (396)
...++++|+|+ |+||+ +|+.|.-|.||.+..++.++.-++|. ..|..| +|.
T Consensus 333 GGLLCvcWSPD---------GKyIv---tGGEDDLVtVwSf~erRVVARGqGHk-SWVs~V-aFD 383 (636)
T KOG2394|consen 333 GGLLCVCWSPD---------GKYIV---TGGEDDLVTVWSFEERRVVARGQGHK-SWVSVV-AFD 383 (636)
T ss_pred cceEEEEEcCC---------ccEEE---ecCCcceEEEEEeccceEEEeccccc-cceeeE-eec
Confidence 12258999999 99999 99999999999999999988877776 666666 665
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=4e-14 Score=111.20 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=135.0
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECC-CCcccceeecCCCCCCCCCcceeeeE
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE-TGLALSLMNVNPNGWHGPRTWRMLYG 121 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~ 121 (396)
..+.|||=....++..+. ...+|.++.+.++ .|++.- .+.|.+|... ..+.++.+....++ ..+.+
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-------kGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-------KGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCC-------CceEe
Confidence 469999966566666554 7889999999865 555555 6789999998 44555555433221 11444
Q ss_pred EEeCCCCCEEEE-EecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCc-EEEEecCCCCCCCc
Q 016032 122 MDINPEKGVVLV-ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF-ARIWDIRRLEAGSS 199 (396)
Q Consensus 122 ~~~~~~~~~l~~-~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~ 199 (396)
++-..+..+|+. |..-|.|.+.|+.....- .......|...|.|++.+- +|.++|++|..|+ |||||..++.....
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 444444445554 455699999999876542 2335566777999999999 9999999999997 79999988776666
Q ss_pred cccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 200 LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
++.-.....|.+++|||+..+||++|..|+++||.++...
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 5544456789999999999999999999999999998644
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1e-13 Score=122.41 Aligned_cols=236 Identities=12% Similarity=0.124 Sum_probs=147.0
Q ss_pred cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe---CCCeEEEEECCCCcccceeecCCCCCCCCCcceeee
Q 016032 44 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS---SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120 (396)
Q Consensus 44 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 120 (396)
.|.+||.......... .+...+...+|+|+ ++.|+..+ .+..|.+|++.+++......... ...
T Consensus 180 ~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----------~~~ 246 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----------HNG 246 (429)
T ss_pred eEEEEcCCCCCCEEee--cCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC----------CcC
Confidence 6899998866554443 26678999999999 77777654 24579999998876543322211 144
Q ss_pred EEEeCCCCCEEEEE-ecCC--eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCC-Cc--EEEEecCCC
Q 016032 121 GMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND-HF--ARIWDIRRL 194 (396)
Q Consensus 121 ~~~~~~~~~~l~~~-~~~g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-~~--i~~wd~~~~ 194 (396)
...|+|+|+.|+.. +.+| .|++||+.++... ........+....|+| +++.|+..+.+ +. |+++|+...
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCC
Confidence 67899999988865 4344 5999999875432 2222333577899999 89888766653 44 444565443
Q ss_pred CCCCccccCCCCCceeEEEEcCCCCEEEEEeCC---CcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCC
Q 016032 195 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 271 (396)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (396)
+. ..+. ..........|+|+|++|+..+.+ ..|.+||+.+++... +.. .. ......|+|+
T Consensus 322 ~~-~~lt--~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-----Lt~-~~----~~~~p~~SpD---- 384 (429)
T PRK03629 322 AP-QRIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-----LTD-TF----LDETPSIAPN---- 384 (429)
T ss_pred Ce-EEee--cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-----eCC-CC----CCCCceECCC----
Confidence 22 1221 223345678999999999876543 358889998776421 111 11 1124678888
Q ss_pred ceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeecc
Q 016032 272 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 322 (396)
Q Consensus 272 ~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (396)
|++++....-.....+.++++ +|+....+..+. ..+... +|+|
T Consensus 385 -----G~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~-~~~~~p-~Wsp 427 (429)
T PRK03629 385 -----GTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD-GQVKFP-AWSP 427 (429)
T ss_pred -----CCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC-CCcCCc-ccCC
Confidence 666663222122334778887 565566666544 445555 6877
No 224
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.4e-15 Score=119.17 Aligned_cols=202 Identities=16% Similarity=0.151 Sum_probs=146.3
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCc
Q 016032 120 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS 199 (396)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 199 (396)
..++|+.+|..+++++.||.+++|+..+...... ...+...|.++.|+| ++.+|++.+.| ..+||+.+++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~---e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE---EIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh---hHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhh
Confidence 6789999999999999999999999766554433 234455799999999 99999999999 999999988644333
Q ss_pred cccCCCCCceeEEEEcCCC-----CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCcee
Q 016032 200 LCDLPHKRVVNSAYFSPSG-----SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA 274 (396)
Q Consensus 200 ~~~~~~~~~i~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (396)
............+.|+.++ .+++....-+.|+.|++....-....+ ......+.....++.-+++
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~---~~~~~~~~~siSsl~VS~d------- 292 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR---LRKKIKRFKSISSLAVSDD------- 292 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc---hhhhhhccCcceeEEEcCC-------
Confidence 3323344456778888766 233344445678887776443211000 0111122222234555555
Q ss_pred eEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCC
Q 016032 275 VIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKE 342 (396)
Q Consensus 275 ~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~ 342 (396)
|+|++ .|+.+|.|-|++..+-+.++-+...|...|+.+ .|+|+.+++++-+ |..+.|..+.-
T Consensus 293 --Gkf~A---lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l-tF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 293 --GKFLA---LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL-TFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred --CcEEE---EeccCCcEEEEEeceeeeeEeehhhheeeeeeE-EEcCCcCcccccccCCceeEEEEee
Confidence 99999 799999999999999998888887777889998 8999999999977 88888876643
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.2e-13 Score=115.01 Aligned_cols=284 Identities=16% Similarity=0.185 Sum_probs=175.7
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEE-----eC-----CCeE
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA-----SS-----DGTV 89 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-----~~-----dg~v 89 (396)
..+++..+++++| +++|.+ .+..+.|++......+.... .. .++++.|+|- +.+|.+- .. .-.+
T Consensus 34 ~~~~~v~~~S~~G-~lfA~~-~~~~v~i~~~~~~~~~lt~~--~~-~~~~L~fSP~-g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNG-RLFAYS-DNQVVKVFEIATLKVVLCVE--LK-KTYDLLFSPK-GNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCC-cEEEEE-cCCeEEEEEccCCcEEEEec--cc-eeeeeeeccc-ccccccccccccccCCCCCCCce
Confidence 3447788899998 666655 56789999998876444442 22 7899999998 8887662 11 2347
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEe
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 169 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 169 (396)
.+|+++++.....+...... -.+..|++|.. +++--..+.+++|++........ .++ ...++.+.+
T Consensus 108 ~v~~vet~~~~s~~q~k~Q~---------~W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~~--kl~--~~~i~~f~l 173 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKMQN---------GWVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQH--KLS--VSGITMLSL 173 (566)
T ss_pred eeeeeccceehhheehhhhc---------Ccccccccchh-hhhhhhcceEEEEecCCccceee--eee--ccceeeEEe
Confidence 79999986555544332221 23566766654 33333346788888766332211 111 224566666
Q ss_pred ccC-CCCEEEE-----eeCCCcEEEEecCCC-------------------------------------------------
Q 016032 170 NPI-QPELLLS-----CGNDHFARIWDIRRL------------------------------------------------- 194 (396)
Q Consensus 170 ~~~-~~~~l~~-----~~~d~~i~~wd~~~~------------------------------------------------- 194 (396)
+|. ....+++ .+.-..|+||.....
T Consensus 174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~L 253 (566)
T KOG2315|consen 174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTL 253 (566)
T ss_pred cCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceE
Confidence 652 1222222 122334555533200
Q ss_pred -----CCCCccccCCCCCceeEEEEcCCCCEEEEE--eCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCC
Q 016032 195 -----EAGSSLCDLPHKRVVNSAYFSPSGSKILTT--SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPK 267 (396)
Q Consensus 195 -----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (396)
+.......+...++|.++.|+|+++.++++ -+=..+.|||++-.-. +...-. ..-++.|+|.
T Consensus 254 yll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--------~df~eg---pRN~~~fnp~ 322 (566)
T KOG2315|consen 254 YLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--------FDFPEG---PRNTAFFNPH 322 (566)
T ss_pred EEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--------EeCCCC---CccceEECCC
Confidence 000111122357899999999999877654 4567899999873321 111000 1126789998
Q ss_pred CCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-------CCcEEEEcC
Q 016032 268 DPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-------SRSIFIWRP 340 (396)
Q Consensus 268 ~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-------d~~i~iw~~ 340 (396)
|++++...-|...|.|.|||+.+.+++..+.... ..+. .|+|||++++|+. |..++||+.
T Consensus 323 ---------g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~---eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 323 ---------GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVF---EWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred ---------CCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEE---EEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 7777776678899999999999988888886654 2222 8999999999864 588999997
Q ss_pred CCcceeee
Q 016032 341 KEKSELVE 348 (396)
Q Consensus 341 ~~~~~~~~ 348 (396)
. |..+..
T Consensus 390 t-G~~l~~ 396 (566)
T KOG2315|consen 390 T-GSLLHE 396 (566)
T ss_pred c-Cceeeh
Confidence 4 444443
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.5e-13 Score=121.42 Aligned_cols=203 Identities=12% Similarity=0.134 Sum_probs=130.9
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEe--CCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEE-eCCC--
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGD--KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAA-SSDG-- 87 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~-~~dg-- 87 (396)
.+.+..+...+.+.+|+|||..++++.. .+..|.+|++.+++...... ....+..+.|+|+ +..|+.. +.+|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPD-G~~La~~~~~~g~~ 267 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPD-GSKLAFALSKTGSL 267 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCC-CCEEEEEEcCCCCc
Confidence 3455567778999999999954433332 23579999998775443321 3334557899999 7766643 4455
Q ss_pred eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC-C--eEEEEeCCCCCCCccceeeecCCccE
Q 016032 88 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-G--FLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
.|.+||+.+++........ ..+....|+|+|+.|+..+.. + .|+++|+..+... .........
T Consensus 268 ~I~~~d~~tg~~~~lt~~~----------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~ 333 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGR----------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN 333 (429)
T ss_pred EEEEEECCCCCEEEccCCC----------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence 5889999887654332111 125678999999988877654 3 4555566654321 122223345
Q ss_pred EEEEeccCCCCEEEEeeCC---CcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCc---EEEEEccc
Q 016032 165 VGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR---LRIWDSIF 237 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---i~iwd~~~ 237 (396)
....|+| ++..|+..+.+ ..|.+||+.+... ..+. .........|+|||++|+.++.++. +.++++..
T Consensus 334 ~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt---~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 334 QDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV-QVLT---DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred cCEEECC-CCCEEEEEEccCCCceEEEEECCCCCe-EEeC---CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 6789999 88888776543 3588899876543 2222 1122346789999999999887764 66777743
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=121.78 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=110.8
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce----------------------------eeeEecCCcccceeEEE
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS----------------------------EKIVYGNIHSCIVNNIR 71 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------------------~~~~~~~~~~~~v~~~~ 71 (396)
+..|+|+.|-|-++.+++.+-.+|.+++||..... .+... ..-...|+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w-~~~~g~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARW-HIGEGSINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcccee-Eecccccccee
Confidence 36899999999887788888889999999763210 00001 11234789999
Q ss_pred EecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCC
Q 016032 72 FNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS 151 (396)
Q Consensus 72 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~ 151 (396)
|+|+ +.+||+.+.||.+||||+.+.+.+..++.-- ..+.|++|+|||++|++|+.|.-|.||.+...+.+
T Consensus 298 FS~D-G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF---------GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 298 FSPD-GKYLATVSQDGFLRIFDFDTQELLGVMKSYF---------GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred EcCC-CceEEEEecCceEEEeeccHHHHHHHHHhhc---------cceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 9998 9999999999999999999988776654222 33899999999999999999999999999886654
Q ss_pred ccceeeecCCccEEEEEecc
Q 016032 152 GEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 152 ~~~~~~~~~~~~i~~~~~~~ 171 (396)
. ..+.|...|..++|.|
T Consensus 368 A---RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 A---RGQGHKSWVSVVAFDP 384 (636)
T ss_pred E---eccccccceeeEeecc
Confidence 3 6788889999999987
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.9e-13 Score=121.28 Aligned_cols=237 Identities=12% Similarity=0.110 Sum_probs=146.1
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC---CCeEEEEECCCCcccceeecCCCCCCCCCcceee
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 119 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (396)
..|.+||.......... .+...+...+|+|+ ++.|+..+. ...|.+||+.+++........ . ..
T Consensus 184 ~~l~i~D~~g~~~~~lt--~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g---------~~ 250 (433)
T PRK04922 184 YALQVADSDGYNPQTIL--RSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQRELVASFR-G---------IN 250 (433)
T ss_pred EEEEEECCCCCCceEee--cCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-C---------Cc
Confidence 36899998765444333 36778999999999 888877664 346999999887654322111 1 14
Q ss_pred eEEEeCCCCCEEEEE-ecCC--eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC-CCc--EEEEecCC
Q 016032 120 YGMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DHF--ARIWDIRR 193 (396)
Q Consensus 120 ~~~~~~~~~~~l~~~-~~~g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~--i~~wd~~~ 193 (396)
.+..|+|+|+.++.. +.+| .|++||+.++... ....+.......+|+| ++..|+..+. ++. |+++++.+
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 467899999987654 4455 6999999876532 2222222456789999 8888777664 444 66667654
Q ss_pred CCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCC---cEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCC
Q 016032 194 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 270 (396)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (396)
.+. ..+.. .......++|+|+|++|+..+.++ .|.+||+.+++... +.... ......|+|+
T Consensus 326 g~~-~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-----Lt~~~-----~~~~p~~spd--- 389 (433)
T PRK04922 326 GSA-ERLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-----LTPGS-----LDESPSFAPN--- 389 (433)
T ss_pred CCe-EEeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-----CCCCC-----CCCCceECCC---
Confidence 332 12211 223345689999999998765443 59999998776421 11110 1124578888
Q ss_pred CceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeecc
Q 016032 271 ESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 322 (396)
Q Consensus 271 ~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (396)
|++++........+.|.++++. |.....+..+. ..+... +|+|
T Consensus 390 ------G~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~-g~~~~p-~wsp 432 (433)
T PRK04922 390 ------GSMVLYATREGGRGVLAAVSTD-GRVRQRLVSAD-GEVREP-AWSP 432 (433)
T ss_pred ------CCEEEEEEecCCceEEEEEECC-CCceEEcccCC-CCCCCC-ccCC
Confidence 6655532222334678888884 44444454332 334444 5776
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=7.9e-16 Score=126.50 Aligned_cols=201 Identities=15% Similarity=0.171 Sum_probs=155.4
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCC
Q 016032 119 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 198 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 198 (396)
.+.+.++.+|.+++.|+..|.|..+|..++....++.. ...|.++.|.. +.++||++ ....++|||-. +.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~----Gt 201 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLH-NEQFFAVA-QKKYVYVYDNN----GT 201 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhc-chHHHHhh-hhceEEEecCC----Cc
Confidence 67789999999999999999999999999776544311 22588999987 77777776 46789999954 44
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEee
Q 016032 199 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR 278 (396)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (396)
.+..+.....|..+.|-|..-+|++++..|.++.-|+.+|+++.....-. +.. ..+.-+|. ..
T Consensus 202 ElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~------G~~--~vm~qNP~---------Na 264 (545)
T KOG1272|consen 202 ELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA------GRT--DVMKQNPY---------NA 264 (545)
T ss_pred EEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC------Ccc--chhhcCCc---------cc
Confidence 44444455679999999999999999999999999999999865332111 000 01222332 11
Q ss_pred eeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccc
Q 016032 279 YISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKE 351 (396)
Q Consensus 279 ~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~ 351 (396)
.+- .|...|+|.+|...+.+++..+..|. +++.++ ++.++|+|+||.+ |..++|||+.+-..+..+..
T Consensus 265 Vih---~GhsnGtVSlWSP~skePLvKiLcH~-g~V~si-Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 265 VIH---LGHSNGTVSLWSPNSKEPLVKILCHR-GPVSSI-AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred eEE---EcCCCceEEecCCCCcchHHHHHhcC-CCcceE-EECCCCcEEeecccccceeEeeeccccccceeec
Confidence 222 68899999999999999999998887 889998 9999999999999 99999999998776666544
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.7e-13 Score=120.43 Aligned_cols=206 Identities=18% Similarity=0.201 Sum_probs=136.2
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeC---CCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEE-EEEeCC
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSD 86 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d 86 (396)
...+.+..|...+.+.+|+|||. .|+..+. +..|.+||+.++...... .+.+.+...+|+|+ +..| ++.+.+
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPD-G~~la~~~~~~ 267 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVG--NFPGMTFAPRFSPD-GRKVVMSLSQG 267 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEee--cCCCcccCcEECCC-CCEEEEEEecC
Confidence 34466778888999999999995 4554432 467999999887654332 35667788999999 6655 566666
Q ss_pred Ce--EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-CC--eEEEEeCCCCCCCccceeeecCC
Q 016032 87 GT--VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKG 161 (396)
Q Consensus 87 g~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g--~i~i~d~~~~~~~~~~~~~~~~~ 161 (396)
+. |.+||+.++...... ... .......|+|+++.|+..+. +| .|+++|+..+... ......
T Consensus 268 g~~~Iy~~d~~~~~~~~Lt-~~~---------~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~ 333 (435)
T PRK05137 268 GNTDIYTMDLRSGTTTRLT-DSP---------AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGG 333 (435)
T ss_pred CCceEEEEECCCCceEEcc-CCC---------CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCC
Confidence 55 777788877653322 111 11456789999998887764 33 6888887664321 222223
Q ss_pred ccEEEEEeccCCCCEEEEeeCC---CcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC------CcEEE
Q 016032 162 SKVVGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD------NRLRI 232 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i 232 (396)
..+....|+| +++.|+..+.+ ..|.+||+..... ..+ .....+..+.|+|+|+.|+..+.+ ..+.+
T Consensus 334 ~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~l---t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 334 GRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE-RIL---TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred CcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce-Eec---cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 3566788999 88888876543 3688888754322 222 122346788999999998776543 25777
Q ss_pred EEccccc
Q 016032 233 WDSIFGN 239 (396)
Q Consensus 233 wd~~~~~ 239 (396)
+|+..+.
T Consensus 409 ~dl~g~~ 415 (435)
T PRK05137 409 VDLTGRN 415 (435)
T ss_pred EECCCCc
Confidence 7876544
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=2.5e-12 Score=110.43 Aligned_cols=289 Identities=16% Similarity=0.217 Sum_probs=172.8
Q ss_pred EEEEeCC----CcEEEeecc--cceeeeEecCCcccceeEEEEecCCCcEEEEEeC----CCeEEEEECCCC--ccccee
Q 016032 36 LLSGDKK----GQVGVWDFY--KVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS----DGTVSCTDLETG--LALSLM 103 (396)
Q Consensus 36 l~s~~~d----g~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~~~~~ 103 (396)
++.|+.. +.|.+|++. ++................++++|+ +++|++... ++.|..|++... +....-
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3445554 689999883 333222221224456678999999 888888766 578999998764 222211
Q ss_pred ecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe-cCCeEEEEeCCCCCCCccceeee-----------cCCccEEEEEecc
Q 016032 104 NVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIH-----------RKGSKVVGLHCNP 171 (396)
Q Consensus 104 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~-----------~~~~~i~~~~~~~ 171 (396)
.....+ .....++++|++++|+++. .+|.|.++++.....+....... .......++.++|
T Consensus 81 ~~~~~g-------~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 81 SVPSGG-------SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp EEEESS-------SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred eeccCC-------CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence 111111 1266789999999999886 57899999998753333221111 1234578999999
Q ss_pred CCCCEEEEee-CCCcEEEEecCCCCC-CCccc--cCCCCCceeEEEEcCCCCEEEEEe-CCCcEEEEEcc--cccccCCC
Q 016032 172 IQPELLLSCG-NDHFARIWDIRRLEA-GSSLC--DLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSI--FGNLDSPS 244 (396)
Q Consensus 172 ~~~~~l~~~~-~d~~i~~wd~~~~~~-~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~--~~~~~~~~ 244 (396)
+++++++.. ....|++|++..... ..... ..........++|+|+++++++.. .++.|.+|++. ++.+....
T Consensus 154 -dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 154 -DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp -TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred -CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 888777654 345899999975431 10111 124556688999999999886665 47889999998 44321111
Q ss_pred cceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC--ccchh--hhhcCCCCCCCcceeee
Q 016032 245 REIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT--TGQLV--AEVMDPNITTISPVNKL 320 (396)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~--~~~~~--~~~~~~~~~~i~~~~~~ 320 (396)
........+.....+..+..+|+ |+++.. +....+.|.+|++. +|++. ..+... ......+ ++
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispd---------g~~lyv--snr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~-~~ 299 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPD---------GRFLYV--SNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHF-AF 299 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TT---------SSEEEE--EECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEE-EE
T ss_pred EeeeccccccccCCceeEEEecC---------CCEEEE--EeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEE-EE
Confidence 11111112333334556788888 766653 33457789999983 33322 222221 1223455 79
Q ss_pred ccCCcEEEeec--CCcEEEEcC--CCccee
Q 016032 321 HPRDDVLASGS--SRSIFIWRP--KEKSEL 346 (396)
Q Consensus 321 ~~~~~~l~sg~--d~~i~iw~~--~~~~~~ 346 (396)
+|+|++|+++. ++.|.+|++ .+|.+.
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 99999999877 689999976 466543
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=5.3e-13 Score=118.03 Aligned_cols=239 Identities=13% Similarity=0.110 Sum_probs=140.6
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC---CeEEEEECCCCcccceeecCCCCCCCCCcceee
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 119 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (396)
..|.++|......... ..+...+.+.+|+|+ ++.|+..+.+ ..|.+||+.+++......... ..
T Consensus 176 ~~L~~~D~dG~~~~~l--~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g----------~~ 242 (427)
T PRK02889 176 YQLQISDADGQNAQSA--LSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG----------SN 242 (427)
T ss_pred cEEEEECCCCCCceEe--ccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC----------Cc
Confidence 3577777754433333 247778999999999 7877776542 459999999887543321111 15
Q ss_pred eEEEeCCCCCEEEE-EecCCeEEEE--eCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC-CCcEEEEecCCCC
Q 016032 120 YGMDINPEKGVVLV-ADNFGFLYLV--DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DHFARIWDIRRLE 195 (396)
Q Consensus 120 ~~~~~~~~~~~l~~-~~~~g~i~i~--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~ 195 (396)
.+.+|+|+|+.|+. .+.+|...+| |+..+. .. ....+........|+| ++..|+..+. ++...+|.+....
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCC
Confidence 57889999998875 5667765555 444432 11 2222333456788999 8887776554 4666666553211
Q ss_pred -CCCccccCCCCCceeEEEEcCCCCEEEEEeCCC---cEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCC
Q 016032 196 -AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 271 (396)
Q Consensus 196 -~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (396)
....+. . ........+|+|+|++|+..+.++ .|.+||+.+++.... ..... .....|+|+
T Consensus 318 g~~~~lt-~-~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-----t~~~~-----~~~p~~spd---- 381 (427)
T PRK02889 318 GAAQRVT-F-TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-----TDTTR-----DESPSFAPN---- 381 (427)
T ss_pred CceEEEe-c-CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-----cCCCC-----ccCceECCC----
Confidence 111221 1 222344678999999998777654 599999987764221 11111 124689998
Q ss_pred ceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccC
Q 016032 272 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 323 (396)
Q Consensus 272 ~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (396)
|++++..........+.+.++ +|+....+..+. +.+... +|+|-
T Consensus 382 -----g~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~-g~~~~p-~wsp~ 425 (427)
T PRK02889 382 -----GRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG-GDVREP-SWGPF 425 (427)
T ss_pred -----CCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC-CCCCCC-ccCCC
Confidence 555543222222345666666 455555554332 334444 67764
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=5.9e-13 Score=118.17 Aligned_cols=204 Identities=16% Similarity=0.156 Sum_probs=133.1
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeC---CCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEE-EEEeCC
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSD 86 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~d 86 (396)
...+.+..|...+.+.+|+|+|. .|+..+. +..|.+||+.++...... .+.....++.|+|+ +..| ++.+.+
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpD-G~~l~~~~s~~ 269 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVA--SFRGINGAPSFSPD-GRRLALTLSRD 269 (433)
T ss_pred CCceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEec--cCCCCccCceECCC-CCEEEEEEeCC
Confidence 34456677888899999999995 5665543 346999999877654332 23445568899999 6655 555655
Q ss_pred C--eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-CC--eEEEEeCCCCCCCccceeeecCC
Q 016032 87 G--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKG 161 (396)
Q Consensus 87 g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g--~i~i~d~~~~~~~~~~~~~~~~~ 161 (396)
| .|.+||+.+++..... ... ......+|+|+++.|+.++. +| .|+++++.++... .+. ..+
T Consensus 270 g~~~Iy~~d~~~g~~~~lt-~~~---------~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt--~~g 335 (433)
T PRK04922 270 GNPEIYVMDLGSRQLTRLT-NHF---------GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RLT--FQG 335 (433)
T ss_pred CCceEEEEECCCCCeEECc-cCC---------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Eee--cCC
Confidence 5 5999999887653321 111 11456789999998887764 44 4777777664421 111 122
Q ss_pred ccEEEEEeccCCCCEEEEeeCCC---cEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC---CcEEEEEc
Q 016032 162 SKVVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDS 235 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~ 235 (396)
.....++|+| +++.|+..+.++ .|.+||+.+.+.. .+ .+........|+|+|++|+..+.+ +.|.++++
T Consensus 336 ~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L---t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 336 NYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL---TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred CCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeE-EC---CCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 2455789999 898888765433 6999998764432 22 222234567999999988776653 35777777
Q ss_pred cc
Q 016032 236 IF 237 (396)
Q Consensus 236 ~~ 237 (396)
..
T Consensus 411 ~g 412 (433)
T PRK04922 411 DG 412 (433)
T ss_pred CC
Confidence 53
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4.3e-13 Score=118.59 Aligned_cols=203 Identities=16% Similarity=0.113 Sum_probs=127.1
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeC-C--CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEE-EEeC
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDK-K--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASS 85 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~ 85 (396)
+...+.+..+...+.+.+|+|+|. .|+..+. + ..|.+||+.++...... .....+....|+|+ +..|+ +.+.
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPD-G~~la~~~~~ 260 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPD-GRTLAVALSR 260 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC-CCEEEEEEcc
Confidence 334455667888999999999995 4555443 2 35999999887654432 23345678999999 66654 6677
Q ss_pred CCeEEEEEC--CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-CCeEEEEeC--CCCCCCccceeeecC
Q 016032 86 DGTVSCTDL--ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDA--RTNSRSGEAILIHRK 160 (396)
Q Consensus 86 dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~i~d~--~~~~~~~~~~~~~~~ 160 (396)
+|...+|.+ .++. ...+.... .......|+|+|+.|+..+. +|...+|.+ ..+.. .... ..
T Consensus 261 ~g~~~Iy~~d~~~~~-~~~lt~~~---------~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~--~~lt--~~ 326 (427)
T PRK02889 261 DGNSQIYTVNADGSG-LRRLTQSS---------GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA--QRVT--FT 326 (427)
T ss_pred CCCceEEEEECCCCC-cEECCCCC---------CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce--EEEe--cC
Confidence 887666654 4433 22222111 11456789999998887654 455555554 43321 1111 12
Q ss_pred CccEEEEEeccCCCCEEEEeeCCC---cEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCC---cEEEEE
Q 016032 161 GSKVVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWD 234 (396)
Q Consensus 161 ~~~i~~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd 234 (396)
+......+|+| ++++|+..+.++ .|.+||+.+.+.. .+. .........|+|+|+.|+.++.++ .+.+.+
T Consensus 327 g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt---~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 327 GSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVT-ALT---DTTRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred CCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc---CCCCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 22345678999 999988776554 6999999765432 221 222346789999999988777544 244445
Q ss_pred c
Q 016032 235 S 235 (396)
Q Consensus 235 ~ 235 (396)
+
T Consensus 402 ~ 402 (427)
T PRK02889 402 S 402 (427)
T ss_pred C
Confidence 5
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=2.6e-12 Score=110.14 Aligned_cols=274 Identities=15% Similarity=0.104 Sum_probs=162.8
Q ss_pred CCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe-CC
Q 016032 8 PDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SD 86 (396)
Q Consensus 8 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~d 86 (396)
.+.+.+..+......-..+.|+||| +++++++.||.|.++|+.+.+....+. -.....+++++++ +++++++. ..
T Consensus 24 ~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~--~G~~~~~i~~s~D-G~~~~v~n~~~ 99 (369)
T PF02239_consen 24 ATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIK--VGGNPRGIAVSPD-GKYVYVANYEP 99 (369)
T ss_dssp TT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--T-TTEEEEEEEET
T ss_pred CCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEe--cCCCcceEEEcCC-CCEEEEEecCC
Confidence 4455566776655444557899999 678888899999999999999888875 4456788999999 88877665 58
Q ss_pred CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe-cCCeEEEEeCCCCCCCccceeeecCCccEE
Q 016032 87 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
+.+.++|.++.+.+..+......... ....+.++..+|....+++.- ..+.|.+.|......... .....+....
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~--~~i~~g~~~~ 175 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDG--PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV--TTIKVGRFPH 175 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTT--S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE--EEEE--TTEE
T ss_pred CceeEeccccccceeecccccccccc--cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce--eeeccccccc
Confidence 99999999999988877654322111 223477788888888666554 458999999877543321 2222333677
Q ss_pred EEEeccCCCCEEEEe-eCCCcEEEEecCCCCCCC----------------------------------------------
Q 016032 166 GLHCNPIQPELLLSC-GNDHFARIWDIRRLEAGS---------------------------------------------- 198 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~---------------------------------------------- 198 (396)
...|.| ++++++++ ..+..|-++|..+.+...
T Consensus 176 D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 176 DGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred ccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 889999 88776554 455677777765432100
Q ss_pred ------ccccCCCCCceeEEEEcCCCCEEEEE----eCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCC
Q 016032 199 ------SLCDLPHKRVVNSAYFSPSGSKILTT----SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 268 (396)
Q Consensus 199 ------~~~~~~~~~~i~~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (396)
.+..+...+.-..+..+|+++++++. ...+.|.++|.++.+..... .......++.+.|+++
T Consensus 255 d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i-------~~~~~~~~~h~ef~~d- 326 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI-------TPGPGKRVVHMEFNPD- 326 (369)
T ss_dssp TTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H-------HHHHT--EEEEEE-TT-
T ss_pred hhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE-------eccCCCcEeccEECCC-
Confidence 00000011122456779999999988 44589999999887543211 1111122567889998
Q ss_pred CCCceeeEeeeeeeecccccccceEEEEcCccchhhhhc
Q 016032 269 PSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM 307 (396)
Q Consensus 269 ~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~ 307 (396)
|+++-.. ....++.|.+||..+.+++.++.
T Consensus 327 --------G~~v~vS-~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 327 --------GKEVWVS-VWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp --------SSEEEEE-EE--TTEEEEEETTTTEEEEEEE
T ss_pred --------CCEEEEE-EecCCCEEEEEECCCcEEEEEEE
Confidence 5443321 22334489999999999888775
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.3e-12 Score=113.59 Aligned_cols=237 Identities=17% Similarity=0.170 Sum_probs=144.8
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC---CCeEEEEECCCCcccceeecCCCCCCCCCcceee
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 119 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (396)
..|.++|.......... .|...+...+|+|+ ++.|+..+. +..|.+||+.+++........ ..+
T Consensus 182 ~~l~~~d~dg~~~~~lt--~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~----------g~~ 248 (435)
T PRK05137 182 KRLAIMDQDGANVRYLT--DGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQRELVGNFP----------GMT 248 (435)
T ss_pred eEEEEECCCCCCcEEEe--cCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCcEEEeecCC----------Ccc
Confidence 37888998765544433 47789999999999 777777653 468999999888654322111 125
Q ss_pred eEEEeCCCCCEEEEE-ecCC--eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC-CC--cEEEEecCC
Q 016032 120 YGMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRR 193 (396)
Q Consensus 120 ~~~~~~~~~~~l~~~-~~~g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~ 193 (396)
...+|+|+|+.|+.. +.++ .|++||+.++... ....+........|+| ++..|+..+. +| .|+++|+..
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC
Confidence 678899999987644 4444 5888898875432 2223333466789999 8888877663 33 688888764
Q ss_pred CCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC---CcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCC
Q 016032 194 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 270 (396)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (396)
.+. ..+. .....+....|+|+|+.|+..+.+ ..|.+||+..+.... . .... ......|+|+
T Consensus 324 ~~~-~~lt--~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-----l-t~~~----~~~~p~~spD--- 387 (435)
T PRK05137 324 SNP-RRIS--FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI-----L-TSGF----LVEGPTWAPN--- 387 (435)
T ss_pred CCe-EEee--cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe-----c-cCCC----CCCCCeECCC---
Confidence 332 2222 234456678999999999877653 357888876543211 1 0111 1225689998
Q ss_pred CceeeEeeeeeeecc-cccc--cceEEEEcCccchhhhhcCCCCCCCcceeeeccC
Q 016032 271 ESLAVIGRYISENYN-GAAL--HPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 323 (396)
Q Consensus 271 ~~~~~~g~~~~~~~~-g~~d--~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (396)
|++++.... +... ..++++|+..+.. ..+... ..+... +|+|-
T Consensus 388 ------G~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~--~~~~~p-~Wsp~ 433 (435)
T PRK05137 388 ------GRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP--GDASDP-AWSPL 433 (435)
T ss_pred ------CCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC--CCccCc-ccCCC
Confidence 555542211 1111 4688888865543 333322 223333 57663
No 237
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.58 E-value=4.6e-13 Score=106.44 Aligned_cols=226 Identities=15% Similarity=0.191 Sum_probs=152.4
Q ss_pred CCCCCCCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccc-ceeeeEecCCcccceeEEEEecCCCcEE
Q 016032 2 KPAHVIPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK-VSEKIVYGNIHSCIVNNIRFNPTNDGTV 80 (396)
Q Consensus 2 ~p~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l 80 (396)
.|......+..++.++||.+.|++...-|..+ -+++.+.|.+++||--.. ++.-..+......+++++.+.+. ...|
T Consensus 6 ~~~~~~~kp~ll~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e-~~~L 83 (404)
T KOG1409|consen 6 KPRPRTKKPELLSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE-SRRL 83 (404)
T ss_pred cccccccchhhhhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc-ceEE
Confidence 44444455667788999999999999988774 589999999999996544 33333333335678899999998 8889
Q ss_pred EEEeCCCeEEEEECCCC----cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec--------------------
Q 016032 81 YAASSDGTVSCTDLETG----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-------------------- 136 (396)
Q Consensus 81 ~s~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------------- 136 (396)
+.|-..|++.-+.+... ...+....+ ...+..+-|+.....+++.+.
T Consensus 84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h---------~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAH---------QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred EEEEecceEEEEEhhhhhhhcchhhhhhhh---------hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 99988999888765432 111111111 112333334333333333333
Q ss_pred -------------------CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCC
Q 016032 137 -------------------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAG 197 (396)
Q Consensus 137 -------------------~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~ 197 (396)
.|.|....+..... ........+.+.+.+++|.| ....+++|..|..+.+||+.-.. +
T Consensus 155 ~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~-~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~-g 231 (404)
T KOG1409|consen 155 ETPASALQFDALYAFVGDHSGQITMLKLEQNGC-QLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK-G 231 (404)
T ss_pred eccCCCCceeeEEEEecccccceEEEEEeecCC-ceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc-c
Confidence 33333332222111 12234456677899999999 88999999999999999996422 2
Q ss_pred CccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccccc
Q 016032 198 SSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241 (396)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 241 (396)
......+|...|..+..-+--+.|.+++.||.|.+|+++.....
T Consensus 232 ~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 232 TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 23333478888999988888889999999999999999866543
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=5.2e-13 Score=103.92 Aligned_cols=149 Identities=15% Similarity=0.291 Sum_probs=101.4
Q ss_pred eEEEEecCCCcEEEEEeC----------CCeEEEEECCC-CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEE--
Q 016032 68 NNIRFNPTNDGTVYAASS----------DGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-- 134 (396)
Q Consensus 68 ~~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-- 134 (396)
..+.|+|. +++|+.-.. -+...+|.++. +.....+..... ..|.+++|+|+++.+++.
T Consensus 9 ~~~~W~~~-G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~--------~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 9 AKLHWQPS-GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE--------GPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEEeccc-CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC--------CceEEEEECcCCCEEEEEEc
Confidence 45778888 655544322 12355555532 233344433222 239999999999987665
Q ss_pred ecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC---CCcEEEEecCCCCCCCccccCCCCCceeE
Q 016032 135 DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDLPHKRVVNS 211 (396)
Q Consensus 135 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~i~~ 211 (396)
..++.|.+||++. .. ..... ...+..+.|+| ++++|++++. .|.|.+||+++.+ .+....|. .++.
T Consensus 80 ~~~~~v~lyd~~~-~~---i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~---~i~~~~~~-~~t~ 148 (194)
T PF08662_consen 80 SMPAKVTLYDVKG-KK---IFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKK---KISTFEHS-DATD 148 (194)
T ss_pred cCCcccEEEcCcc-cE---eEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCE---EeeccccC-cEEE
Confidence 3567999999972 22 11222 33688999999 9999999875 4679999998543 34444444 4789
Q ss_pred EEEcCCCCEEEEEeC------CCcEEEEEcc
Q 016032 212 AYFSPSGSKILTTSQ------DNRLRIWDSI 236 (396)
Q Consensus 212 ~~~~~~~~~l~~~~~------d~~i~iwd~~ 236 (396)
++|+|+|++|++++. |+.++||+..
T Consensus 149 ~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 149 VEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 999999999998874 7889999985
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=5.8e-13 Score=103.66 Aligned_cols=150 Identities=13% Similarity=0.236 Sum_probs=104.0
Q ss_pred EEEEecCCCCcEEEEEeC---------CCcEEEeecccc-eeeeEecCCcccceeEEEEecCCCcEEEE--EeCCCeEEE
Q 016032 24 TCLEFHPTNNHILLSGDK---------KGQVGVWDFYKV-SEKIVYGNIHSCIVNNIRFNPTNDGTVYA--ASSDGTVSC 91 (396)
Q Consensus 24 ~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s--~~~dg~v~i 91 (396)
..+.|+|+|+.+++.... -+...||.++.. .....+.....++|.+++|+|+ ++.|++ |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~-g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN-GNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC-CCEEEEEEccCCcccEE
Confidence 458899999766665552 234566666332 2222332234567999999999 666544 345789999
Q ss_pred EECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec---CCeEEEEeCCCCCCCccceeeecCCccEEEEE
Q 016032 92 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---FGFLYLVDARTNSRSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~ 168 (396)
||++ ++.+..+. .. .+..+.|+|+|+++++++. .|.|.+||++..+.+.. ..+. .++.++
T Consensus 88 yd~~-~~~i~~~~--~~---------~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~----~~~~-~~t~~~ 150 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQ---------PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST----FEHS-DATDVE 150 (194)
T ss_pred EcCc-ccEeEeec--CC---------CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec----cccC-cEEEEE
Confidence 9996 44444432 11 2778999999999999864 46799999997554422 2232 578999
Q ss_pred eccCCCCEEEEeeC------CCcEEEEecC
Q 016032 169 CNPIQPELLLSCGN------DHFARIWDIR 192 (396)
Q Consensus 169 ~~~~~~~~l~~~~~------d~~i~~wd~~ 192 (396)
|+| ++++|++++. |..++||+..
T Consensus 151 WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 151 WSP-DGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EcC-CCCEEEEEEeccceeccccEEEEEec
Confidence 999 9999998874 6788999874
No 240
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=5.2e-12 Score=106.80 Aligned_cols=284 Identities=15% Similarity=0.187 Sum_probs=175.9
Q ss_pred eEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC-----------CCeEEE
Q 016032 23 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-----------DGTVSC 91 (396)
Q Consensus 23 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-----------dg~v~i 91 (396)
=+-+.|||.| .+|+|-..-| |.+|--.+-.....+. |. .|.-+.|+|. ..+|++-+. ...++|
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDRIQRFY--HP-GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCccHHHHHhcc--CC-CceeeecCCc-cceEEEecCCccccCcccCCCceEEE
Confidence 3568999999 6899887654 8899877666666664 65 4899999999 999999653 257999
Q ss_pred EECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 92 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
||+.+|.....+....... .. -.-+.||.|++++|.-.. ..|.||+..+....... .. .-..|....|+|
T Consensus 287 WDI~tG~lkrsF~~~~~~~---~~---WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~K-sl--ki~gIr~FswsP 356 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPY---LK---WPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKK-SL--KISGIRDFSWSP 356 (698)
T ss_pred EEccccchhcceeccCCCc---cc---cceEEeccCCceeEEecc-ceEEEEecCceeeeccc-cc--CCccccCcccCC
Confidence 9999999988887642221 11 334679999999987665 57788876653222110 01 112355566666
Q ss_pred CCCCEEEEeeCC---------------------------------------------------------CcEEEEecCCC
Q 016032 172 IQPELLLSCGND---------------------------------------------------------HFARIWDIRRL 194 (396)
Q Consensus 172 ~~~~~l~~~~~d---------------------------------------------------------~~i~~wd~~~~ 194 (396)
.+++||-=+.. ..+.|+.++..
T Consensus 357 -~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK 435 (698)
T KOG2314|consen 357 -TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK 435 (698)
T ss_pred -CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeecc
Confidence 44444431110 01222222211
Q ss_pred CCCCccccCCCCCceeEEEEcCCCCEEEEEeC---CCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCC
Q 016032 195 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ---DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 271 (396)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (396)
.. ++....-...|...+|-|.|..+++-+. ..++.+|-+++... .+.....+.. ...-.+.|+|.
T Consensus 436 dI--pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk-~~~N~vfwsPk---- 503 (698)
T KOG2314|consen 436 DI--PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK-KFANTVFWSPK---- 503 (698)
T ss_pred CC--CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc-cccceEEEcCC----
Confidence 11 1111234567888899999998876654 35788888874111 0011111221 22337899999
Q ss_pred ceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-------CCcEEEEcCCC
Q 016032 272 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-------SRSIFIWRPKE 342 (396)
Q Consensus 272 ~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-------d~~i~iw~~~~ 342 (396)
|++++.+.-++..|.+.++|+.-..+...-...| ...+.+ .|.|.|+|+++++ |..-+||+.+.
T Consensus 504 -----G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~v-eWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 504 -----GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEV-EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred -----CcEEEEEEecccccceEEEecchhhhhhccCccc-cccccc-eECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 8888766667788999999997534333222222 344455 7999999999975 34456666543
No 241
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=7.8e-11 Score=95.01 Aligned_cols=282 Identities=12% Similarity=0.160 Sum_probs=175.0
Q ss_pred CCcEEEeeccccee--eeEecCCcccceeEEEEecCCCcEEEEEeC---CCeEEEEECCC--CcccceeecCCCCCCCCC
Q 016032 42 KGQVGVWDFYKVSE--KIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLET--GLALSLMNVNPNGWHGPR 114 (396)
Q Consensus 42 dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~ 114 (396)
+.-|++|++.+... .....-.+...++-|+|+|+ .+.|+++.. +|.|-.|.++. |+... +..... .+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-ln~~~~--~g-- 88 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-LNRQTL--PG-- 88 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEE-eecccc--CC--
Confidence 46799999985332 22222347788999999999 878888765 46787777765 33322 211111 11
Q ss_pred cceeeeEEEeCCCCCEEEEEec-CCeEEEEeCCCCCCCccceeeecCCcc----------EEEEEeccCCCCEEEEeeC-
Q 016032 115 TWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSK----------VVGLHCNPIQPELLLSCGN- 182 (396)
Q Consensus 115 ~~~~v~~~~~~~~~~~l~~~~~-~g~i~i~d~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~l~~~~~- 182 (396)
.....+++++++++++++.. .|.|.++-++....+........|.+. +....+.| +++++++..-
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG 165 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLG 165 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecC
Confidence 11477899999999998854 479999999775444433333333223 77888999 8888887653
Q ss_pred CCcEEEEecCCCCCCCcccc-CCCCCceeEEEEcCCCCEEEEEeC-CCcEEEEEcccc--cccCCCcceeecccccccCC
Q 016032 183 DHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFG--NLDSPSREIVHSHDFNRHLT 258 (396)
Q Consensus 183 d~~i~~wd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~ 258 (396)
-..|.+|++..+........ .........|.|+|++++..+.++ +++|.+|..... ++............|.+...
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 34799999985543222111 134556789999999999876665 899999999873 33221111122334555544
Q ss_pred ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc--cchhhhhcCCC-CCCCcceeeeccCCcEEEeec--CC
Q 016032 259 PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT--GQLVAEVMDPN-ITTISPVNKLHPRDDVLASGS--SR 333 (396)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~--~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~sg~--d~ 333 (396)
.-.+..+|+ |+|+.. +-.....|.+|.+.. +++...-.... ...-... .|++.|++|++++ +.
T Consensus 246 ~aaIhis~d---------GrFLYa--sNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F-~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 246 AAAIHISPD---------GRFLYA--SNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF-NINPSGRFLIAANQKSD 313 (346)
T ss_pred eeEEEECCC---------CCEEEE--ecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc-eeCCCCCEEEEEccCCC
Confidence 445666776 888863 222334677887653 33211111111 1112333 5899999999987 57
Q ss_pred cEEEEcCC--Ccc
Q 016032 334 SIFIWRPK--EKS 344 (396)
Q Consensus 334 ~i~iw~~~--~~~ 344 (396)
.|.+|..+ +|+
T Consensus 314 ~i~vf~~d~~TG~ 326 (346)
T COG2706 314 NITVFERDKETGR 326 (346)
T ss_pred cEEEEEEcCCCce
Confidence 89998765 454
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=5.2e-13 Score=120.68 Aligned_cols=278 Identities=12% Similarity=0.111 Sum_probs=182.2
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC-----CcEEEEEeCCCeEEEEE
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-----DGTVYAASSDGTVSCTD 93 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~s~~~dg~v~iwd 93 (396)
|-+++++.++-. +. |.+|+ --.|.+||+..+..+..+...+...+. .+.+ +..++++..-+.+..=+
T Consensus 6 ~~~~l~~~~~~~--~~-llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DY-LLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccccchhhcc--ce-eeecC-CCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecc
Confidence 334555666544 23 44443 346999999887655443322222222 1110 34455555443333322
Q ss_pred CCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCC-ccEEEEEeccC
Q 016032 94 LETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-SKVVGLHCNPI 172 (396)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ 172 (396)
..... ...+ . ..+....+..+...++.++.++.+.+||........+........ ....-+-.++
T Consensus 78 ~~~~~-~~~~----------s--~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~- 143 (967)
T KOG0974|consen 78 ASNQI-IERF----------S--DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA- 143 (967)
T ss_pred hhhhh-hhhc----------c--ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-
Confidence 22111 1111 0 113444555677889999999999999998765544332111110 0122223445
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccc
Q 016032 173 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHD 252 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 252 (396)
+.-++++|+--+.|.+|+... ........+|.+.|.++.|+.+|.++++.|.|.++++|++.+++... ...
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~--dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~ 214 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHE--DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTG 214 (967)
T ss_pred cEEEEEeccccccEEEEeccc--cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------ccc
Confidence 678999999999999999873 22233445899999999999999999999999999999999988754 334
Q ss_pred ccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-
Q 016032 253 FNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS- 331 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~- 331 (396)
|.....++.+.+.|. ++. +++.|-+.++|+. ++..+..+.+|....+..+ +.+++...++|++
T Consensus 215 fgHsaRvw~~~~~~n-----------~i~---t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~-~~~~~~~~~vT~g~ 278 (967)
T KOG0974|consen 215 FGHSARVWACCFLPN-----------RII---TVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKI-AVPIGVIIKVTGGN 278 (967)
T ss_pred ccccceeEEEEeccc-----------eeE---EeccceEEEEEec-ccceehhhhhhhhcceeEE-EEcCCceEEEeecc
Confidence 444555567777774 333 6789999999965 4566668889988999988 7889999999988
Q ss_pred CCcEEEEcCCCc
Q 016032 332 SRSIFIWRPKEK 343 (396)
Q Consensus 332 d~~i~iw~~~~~ 343 (396)
|+.+++|++...
T Consensus 279 Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 279 DSTLKLWDLNGR 290 (967)
T ss_pred Ccchhhhhhhcc
Confidence 999999998654
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.51 E-value=1.2e-10 Score=97.70 Aligned_cols=275 Identities=12% Similarity=0.019 Sum_probs=165.1
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe----------CCCeEEEEECCCCcccceeecCCCCCCC
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLETGLALSLMNVNPNGWHG 112 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 112 (396)
++|.+.|..+.+.+..+..+.... .+ ++|+ ++.|+.+. .+..|.+||..+.+.+..+..+..+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 899999999988887775443332 34 9999 66665554 4789999999999999988876552211
Q ss_pred CCcceeeeEEEeCCCCCEEEEEe-c-CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEe
Q 016032 113 PRTWRMLYGMDINPEKGVVLVAD-N-FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWD 190 (396)
Q Consensus 113 ~~~~~~v~~~~~~~~~~~l~~~~-~-~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd 190 (396)
.. .....++++|+|+++++.. . +..|.+.|+.+++...+.-. .....-...+. . .++ +-+.||......
T Consensus 103 ~~--~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e-~-~~~-~~~~Dg~~~~v~ 173 (352)
T TIGR02658 103 VG--TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTAN-D-TFF-MHCRDGSLAKVG 173 (352)
T ss_pred cc--CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecC-C-ccE-EEeecCceEEEE
Confidence 11 1245788999999999876 3 68999999999876654322 11122222221 1 222 222344444433
Q ss_pred cCCCCCCC--ccccCCC------CCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccc---cCC
Q 016032 191 IRRLEAGS--SLCDLPH------KRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR---HLT 258 (396)
Q Consensus 191 ~~~~~~~~--~~~~~~~------~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~ 258 (396)
+....... ....+.. ..+ .|.+ +|+++.+... |.|.+.|+....... .. ......+.. .-.
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~-~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LP-AIEAFTEAEKADGWR 246 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCccee-cc-eeeeccccccccccC
Confidence 32211100 0000000 112 4456 8888877766 999999976543211 00 011111110 000
Q ss_pred c---eeEEeCCCCCCCceeeEeeeeeeeccc-------ccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCc-EE
Q 016032 259 P---FRAEWDPKDPSESLAVIGRYISENYNG-------AALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD-VL 327 (396)
Q Consensus 259 ~---~~~~~~~~~~~~~~~~~g~~~~~~~~g-------~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l 327 (396)
+ -.++++|+ |+.+.....+ ...+.|.++|+.+++.+..+... .....+ +++||++ +|
T Consensus 247 P~g~q~ia~~~d---------g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~i-avS~Dgkp~l 314 (352)
T TIGR02658 247 PGGWQQVAYHRA---------RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSI-NVSQDAKPLL 314 (352)
T ss_pred CCcceeEEEcCC---------CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeE-EECCCCCeEE
Confidence 0 01566665 3333321111 12257999999999999887654 345566 8999999 77
Q ss_pred Eeec--CCcEEEEcCCCcceeeec
Q 016032 328 ASGS--SRSIFIWRPKEKSELVEQ 349 (396)
Q Consensus 328 ~sg~--d~~i~iw~~~~~~~~~~~ 349 (396)
++.+ ++.|.+.|+.+++.+..+
T Consensus 315 yvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEeCCCCCcEEEEECcCCeEEeee
Confidence 7655 789999999999999887
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.50 E-value=1.3e-11 Score=96.33 Aligned_cols=275 Identities=15% Similarity=0.144 Sum_probs=169.7
Q ss_pred CCcEEEeecccceeee--EecCCcccceeEEEEec--CCCc-EEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcc
Q 016032 42 KGQVGVWDFYKVSEKI--VYGNIHSCIVNNIRFNP--TNDG-TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTW 116 (396)
Q Consensus 42 dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~--~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 116 (396)
.|.+.+|++...+... .+.......+..+.|.. ..+. .++-+-..|.|.++..........+..-. .....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls----~~ki~ 120 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS----SKKIS 120 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc----hhhhh
Confidence 4678889887654332 22233455677777763 2244 45666778999999876544433332111 11111
Q ss_pred e-eeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCC
Q 016032 117 R-MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLE 195 (396)
Q Consensus 117 ~-~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~ 195 (396)
. ...++.|++.+..++++..+|.+.+.+...... .+......|..++.-..|+..+++++++|++|+.+..||+|...
T Consensus 121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l-e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL-EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred heeeeEEEeeccCceEEEEcCCCcEEEEecceeee-eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 1 256788999999999999999999665544322 22223455666788888888788999999999999999998433
Q ss_pred CCCccc-cCCCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEccc-ccccCCCcceeecccccccCCceeEEeCCCCCCCc
Q 016032 196 AGSSLC-DLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIF-GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSES 272 (396)
Q Consensus 196 ~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (396)
. .... ...|...|.++.-+| .+.++++|+.|-.|++||.++ ++.+. ..... ....++.++|...
T Consensus 200 ~-~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-------~~~v~--GGVWRi~~~p~~~--- 266 (339)
T KOG0280|consen 200 T-FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-------KAKVG--GGVWRIKHHPEIF--- 266 (339)
T ss_pred c-eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-------cCccc--cceEEEEecchhh---
Confidence 2 1111 124778899998887 788999999999999999984 33322 11112 2335788888643
Q ss_pred eeeEeeeeeeecccccccceEEEEcCccch-----hhhhcCCCCCCCcceeeeccCCcEEEeec--CCcEE-EEcCCCcc
Q 016032 273 LAVIGRYISENYNGAALHPIDFIDITTGQL-----VAEVMDPNITTISPVNKLHPRDDVLASGS--SRSIF-IWRPKEKS 344 (396)
Q Consensus 273 ~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~sg~--d~~i~-iw~~~~~~ 344 (396)
++.++ .+.-+-.+|-+...+.. +.....|+ .-.+.- .|.....+|+|++ |..|+ +|-..+++
T Consensus 267 ----~~lL~----~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd-Sl~YG~-DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 267 ----HRLLA----ACMHNGAKILDSSDKVLEFQIVLPSDKIHD-SLCYGG-DWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ----hHHHH----HHHhcCceEEEecccccchheeeecccccc-ceeecc-ccccccceeeeeeccccceeeeeeeccCC
Confidence 22222 22222255555543322 12222333 222222 5655567899987 88866 88776665
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.1e-11 Score=110.42 Aligned_cols=193 Identities=17% Similarity=0.208 Sum_probs=127.2
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCC---CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEE-EEEeCCC-
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKK---GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTV-YAASSDG- 87 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~s~~~dg- 87 (396)
.+.+..+...+.+.+|+|+|. .|+.+... ..|++||+.++...... .+...+.+++|+|+ +..| ++.+.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spD-g~~l~~~~~~~~~ 257 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPD-GSKLAVSLSKDGN 257 (417)
T ss_pred CEEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC-CCEEEEEECCCCC
Confidence 455666777899999999995 56555433 47999999887544333 25566778999999 6655 4555444
Q ss_pred -eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC-C--eEEEEeCCCCCCCccceeeecCCcc
Q 016032 88 -TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-G--FLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 88 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
.|.+|++.++....... ... ......|+|+++.|+..+.. + .|+++|+..+... ........
T Consensus 258 ~~i~~~d~~~~~~~~l~~-~~~---------~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~ 323 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTN-GPG---------IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGY 323 (417)
T ss_pred ccEEEEECCCCCEEECCC-CCC---------CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCC
Confidence 58888988765433221 111 13456799999988776543 3 6888888765421 22223345
Q ss_pred EEEEEeccCCCCEEEEeeCCC---cEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCC
Q 016032 164 VVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 228 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 228 (396)
...+.|+| ++.+++.++.++ .|.+||+.+... ..+. .........|+|+++.|+..+.++
T Consensus 324 ~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~---~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 NASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT---DTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCe-EEcc---CCCCCCCceECCCCCEEEEEEeCC
Confidence 67889999 888888887765 788999876322 2221 122345568999999988877654
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=2.1e-11 Score=102.20 Aligned_cols=299 Identities=16% Similarity=0.144 Sum_probs=175.5
Q ss_pred CCCccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 7 IPDQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 7 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
.+....-..+..-.-++..++|||.| .+|++.... .|.+|.-.....+..+. | ..|..+.|+|. +.+|.+-+..
T Consensus 19 ~~s~~~~~~~~~~~~p~~~~~~SP~G-~~l~~~~~~-~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~-~kYL~tw~~~ 92 (561)
T COG5354 19 SQSEVIHTRFESENWPVAYVSESPLG-TYLFSEHAA-GVECWGGPSKAKLVRFR--H-PDVKYLDFSPN-EKYLVTWSRE 92 (561)
T ss_pred CccccccccccccCcchhheeecCcc-hheehhhcc-ceEEccccchhheeeee--c-CCceecccCcc-cceeeeeccC
Confidence 33333333344455688999999999 678776654 59999988777555553 4 46999999999 9999986544
Q ss_pred C---------------eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCC
Q 016032 87 G---------------TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS 151 (396)
Q Consensus 87 g---------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~ 151 (396)
. .+.+||+.++..+..+........+ -.-+.|+-+..++|-- ....++++++ +....
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~------Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG------WPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeeccccCCcccc------cceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 3 4999999999998887665443111 1245566666555444 3346667665 22111
Q ss_pred ccceeeecCCccEEEEEeccC-CCCEEEE-----eeCCCcEEEEecCCCCC-----------------------------
Q 016032 152 GEAILIHRKGSKVVGLHCNPI-QPELLLS-----CGNDHFARIWDIRRLEA----------------------------- 196 (396)
Q Consensus 152 ~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----~~~d~~i~~wd~~~~~~----------------------------- 196 (396)
....... ....+....|+|. ++..|+. ....+++++|.+.....
T Consensus 165 ~~p~~~l-r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 165 EHPFKNL-RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred cCchhhc-cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 1000000 0113444444442 1112221 12233444443321100
Q ss_pred --------------------CCccccC-CCCCceeEEEEcCCCCEEEEEe--CCCcEEEEEcccccccCCCcceeecccc
Q 016032 197 --------------------GSSLCDL-PHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSIFGNLDSPSREIVHSHDF 253 (396)
Q Consensus 197 --------------------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 253 (396)
...+... ...++|...+|.|.++.+++.+ .+..+.++|++..-. +...-
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~--------~~~Pe 315 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR--------FYFPE 315 (561)
T ss_pred eeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceE--------EecCC
Confidence 1111111 3467888888888777765544 567788888874311 00000
Q ss_pred cccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhh-hhcCCCCCCCcceeeeccCCcEEEee--
Q 016032 254 NRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVA-EVMDPNITTISPVNKLHPRDDVLASG-- 330 (396)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~sg-- 330 (396)
... -+..|+|. ++|+....-+...|.|.+||....-.+. .+.+.. ...+ .|+|+++++.+.
T Consensus 316 ~~r---NT~~fsp~---------~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n-~s~~---~wspd~qF~~~~~t 379 (561)
T COG5354 316 QKR---NTIFFSPH---------ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN-TSYC---DWSPDGQFYDTDTT 379 (561)
T ss_pred ccc---ccccccCc---------ccEEEEecCCccccceEEeccCCceEEEEEeecCC-ceEe---eccCCceEEEecCC
Confidence 000 14667776 7777765567778899999987655444 554443 2222 799999998874
Q ss_pred ----c-CCcEEEEcCCCcc
Q 016032 331 ----S-SRSIFIWRPKEKS 344 (396)
Q Consensus 331 ----~-d~~i~iw~~~~~~ 344 (396)
- |..|.||++....
T Consensus 380 s~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 380 SEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CcccccCcceEEEEecCch
Confidence 2 6889999986654
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2e-12 Score=109.63 Aligned_cols=194 Identities=13% Similarity=0.143 Sum_probs=148.8
Q ss_pred EEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCC--CCCCC
Q 016032 36 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPN--GWHGP 113 (396)
Q Consensus 36 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~ 113 (396)
|.+++....|+=++++.+..+..+ ....+.++++..++. ..+|++|+.+|.|-+||.+....+..+..... ...+.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEcccccccccc-ccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence 344444557888899888777666 345688999999998 88999999999999999999888777765443 11223
Q ss_pred CcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCC
Q 016032 114 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 193 (396)
Q Consensus 114 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 193 (396)
.....|+++.|+.+|-.+++|+..|.+.|||+++.++.. ...|....+|..+.|.+.+..--+.......++|||-.+
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~--~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL--VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT 303 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee--ecccCCccceeeecccccCCCceEEecchHHhhhccccc
Confidence 333459999999999999999999999999999977653 345666678999999884433334444567899999876
Q ss_pred CCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 016032 194 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
++. +........++.+++-|++-+++++..++.+..|=+.
T Consensus 304 Gk~---~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 304 GKP---MASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CCc---eeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 554 4444556679999999999999999998888877664
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.8e-11 Score=106.60 Aligned_cols=236 Identities=12% Similarity=0.139 Sum_probs=137.4
Q ss_pred cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC-C--CeEEEEECCCCcccceeecCCCCCCCCCcceeee
Q 016032 44 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-D--GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120 (396)
Q Consensus 44 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 120 (396)
.|.++|.......... .+...+....|+|+ ++.|+..+. + ..|.+||+.+++......... ...
T Consensus 199 ~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g----------~~~ 265 (448)
T PRK04792 199 QLMIADYDGYNEQMLL--RSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG----------ING 265 (448)
T ss_pred EEEEEeCCCCCceEee--cCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC----------CcC
Confidence 5677787665444333 36678999999999 777766543 3 358889998876533221111 134
Q ss_pred EEEeCCCCCEEEEE-ecCC--eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC-CC--cEEEEecCCC
Q 016032 121 GMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRL 194 (396)
Q Consensus 121 ~~~~~~~~~~l~~~-~~~g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~ 194 (396)
..+|+|+|+.|+.. +.+| .|+++|+.++... ....+.......+|+| ++..|+..+. ++ .|+++|+.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 67899999988764 5555 4888888775432 1222233466789999 8887766553 33 4666677554
Q ss_pred CCCCccccCCCCCceeEEEEcCCCCEEEEEeC-CC--cEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCC
Q 016032 195 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DN--RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 271 (396)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (396)
+.. .+.. ........+|+|+|++|+..+. ++ .|.++|+.+++... +..... .....|+|+
T Consensus 341 ~~~-~Lt~--~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-----lt~~~~-----d~~ps~spd---- 403 (448)
T PRK04792 341 KVS-RLTF--EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-----LTSTRL-----DESPSVAPN---- 403 (448)
T ss_pred CEE-EEec--CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-----ccCCCC-----CCCceECCC----
Confidence 322 2211 1222345789999999877655 34 45557777665321 111111 113468888
Q ss_pred ceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeecc
Q 016032 272 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHP 322 (396)
Q Consensus 272 ~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (396)
|++++....-.....+++++. +|+....+..+. ..+... +|+|
T Consensus 404 -----G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~-g~~~~p-~Wsp 446 (448)
T PRK04792 404 -----GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ-GEVKSP-AWSP 446 (448)
T ss_pred -----CCEEEEEEecCCceEEEEEEC-CCCceEECcCCC-CCcCCC-ccCC
Confidence 555542222222345778887 566555555443 334444 6776
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=4.6e-11 Score=106.39 Aligned_cols=176 Identities=14% Similarity=0.121 Sum_probs=116.4
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC---CeEEEEECCCCcccceeecCCCCCCCCCcceee
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 119 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (396)
..|.++|.......... .+...+...+|+|+ +++|+.+..+ ..|.+||+.+++........ ..+
T Consensus 170 ~~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~----------~~~ 236 (417)
T TIGR02800 170 YELQVADYDGANPQTIT--RSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQREKVASFP----------GMN 236 (417)
T ss_pred ceEEEEcCCCCCCEEee--cCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC----------CCc
Confidence 35888887654444333 36667899999999 8888776543 47999999987654332211 115
Q ss_pred eEEEeCCCCCEEEEE-ecCC--eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC-CC--cEEEEecCC
Q 016032 120 YGMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRR 193 (396)
Q Consensus 120 ~~~~~~~~~~~l~~~-~~~g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~ 193 (396)
.+++|+|+++.|+.. +.++ .|++||+.++... ....+........|+| ++..|+..+. .+ .|+++|+.+
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence 568899999877654 4443 6889998875422 1122222345678999 8887776554 33 577788765
Q ss_pred CCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCC---cEEEEEccccc
Q 016032 194 LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN---RLRIWDSIFGN 239 (396)
Q Consensus 194 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~ 239 (396)
.+. ..+. .+...+..+.|+|+|++|+.++.++ .|.+||+.++.
T Consensus 312 ~~~-~~l~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 312 GEV-RRLT--FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCE-EEee--cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 332 1121 2345567889999999999888775 78899987754
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=4.7e-12 Score=100.82 Aligned_cols=265 Identities=14% Similarity=0.211 Sum_probs=166.1
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc-----cceeecCCCCC---CCCCcceeeeEEEeCCCC--CEEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-----LSLMNVNPNGW---HGPRTWRMLYGMDINPEK--GVVL 132 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~--~~l~ 132 (396)
...-|.++.|... |.+|++|..+|.|.++.-..... ...++.+...+ ........|..+.|.+++ ..++
T Consensus 24 eadiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 4467899999999 99999999999999997543321 11222221111 111222347888898864 5678
Q ss_pred EEecCCeEEEEeCCCCCCCc------------------cc---------------eeeecCCccEEEEEeccCCCCEEEE
Q 016032 133 VADNFGFLYLVDARTNSRSG------------------EA---------------ILIHRKGSKVVGLHCNPIQPELLLS 179 (396)
Q Consensus 133 ~~~~~g~i~i~d~~~~~~~~------------------~~---------------~~~~~~~~~i~~~~~~~~~~~~l~~ 179 (396)
..+.|.+|++|-+....... .+ ...+.|..-|+++.++. +...+++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS 181 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS 181 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee
Confidence 88899999999876432111 00 01234555688999998 8888877
Q ss_pred eeCCCcEEEEecCCCCCCCccccC-C-----CCCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCccee----
Q 016032 180 CGNDHFARIWDIRRLEAGSSLCDL-P-----HKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIV---- 248 (396)
Q Consensus 180 ~~~d~~i~~wd~~~~~~~~~~~~~-~-----~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---- 248 (396)
+ +|-.|.+|++.-....-.+... + -...|++..|+| ..+.++-++..|+|++-|++...+......+.
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 6 5788999998643222112111 1 234688999999 56677888889999999999554322111110
Q ss_pred ---ecccccccCC-ceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC-ccchhhhhcCCC-----------CC
Q 016032 249 ---HSHDFNRHLT-PFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT-TGQLVAEVMDPN-----------IT 312 (396)
Q Consensus 249 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~-~~~~~~~~~~~~-----------~~ 312 (396)
....+...+. ...+.|++. |+|+. ...--+|++||+. ..+++.++..|. ..
T Consensus 261 dp~~rsffseiIsSISDvKFs~s---------Gryil----sRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHS---------GRYIL----SRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccC---------CcEEE----EeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 0111111111 124677776 89988 3344789999983 444444433221 12
Q ss_pred CCc---ceeeeccCCcEEEeec-CCcEEEEcCCCcc
Q 016032 313 TIS---PVNKLHPRDDVLASGS-SRSIFIWRPKEKS 344 (396)
Q Consensus 313 ~i~---~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~ 344 (396)
.|. -+ +|+.++.++.||+ ...++++++..|.
T Consensus 328 ~IfdKFec-~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 328 AIFDKFEC-SWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred chhheeEE-EEcCCcceEecccccceEEEecCCCCc
Confidence 222 12 6888999999999 9999999976664
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=6.8e-11 Score=104.19 Aligned_cols=244 Identities=13% Similarity=0.101 Sum_probs=138.2
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcE---EEEEeCC--CeEEEEECCCCcccceeecCCCCCCCCCcce
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGT---VYAASSD--GTVSCTDLETGLALSLMNVNPNGWHGPRTWR 117 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 117 (396)
..|.+.|.......... .....+..-+|+|+ +.. +++...+ ..|.+.++.+++..........
T Consensus 165 ~~l~~~d~dG~~~~~lt--~~~~~~~sP~wSPD-G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~--------- 232 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT--QEHSLSITPTWMHI-GSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN--------- 232 (428)
T ss_pred ceEEEEcCCCCCceEcc--cCCCCcccceEccC-CCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC---------
Confidence 36777787765544433 24556778899999 543 2344333 3578888888765444322211
Q ss_pred eeeEEEeCCCCCEEEEEec-CC----eEEEEeCCCCCCCccceeeec-CCccEEEEEeccCCCCEEEEee-CCCcEEEEe
Q 016032 118 MLYGMDINPEKGVVLVADN-FG----FLYLVDARTNSRSGEAILIHR-KGSKVVGLHCNPIQPELLLSCG-NDHFARIWD 190 (396)
Q Consensus 118 ~v~~~~~~~~~~~l~~~~~-~g----~i~i~d~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~-~d~~i~~wd 190 (396)
....+|+|||+.|+.... .| .+.+|++..+... ....... ........+|+| ++..|+..+ .+|...+|.
T Consensus 233 -~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g-~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 233 -QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG-KPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred -ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC-cceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEE
Confidence 345789999998887653 23 3444676543111 1111111 112345789999 888777655 466555554
Q ss_pred --cCCC-CCCCccccCCCCCceeEEEEcCCCCEEEEEeCC---CcEEEEEcccccccCCCcceeecccccccCCceeEEe
Q 016032 191 --IRRL-EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW 264 (396)
Q Consensus 191 --~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (396)
+... .....+. .....+....|+|+|+.|+..+.+ ..|.+||+.+++..... .. . .......|
T Consensus 310 ~~~~~~g~~~~~lt--~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-----~~--~--~~~~~p~w 378 (428)
T PRK01029 310 MQIDPEGQSPRLLT--KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-----TS--P--ENKESPSW 378 (428)
T ss_pred EECcccccceEEec--cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-----CC--C--CCccceEE
Confidence 4311 1111121 233456788999999998876543 36999999887653211 00 0 11125789
Q ss_pred CCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCC
Q 016032 265 DPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRD 324 (396)
Q Consensus 265 ~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (396)
+|+ |++++..........|+++|+.+++........ ...... +|+|-.
T Consensus 379 SpD---------G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~--g~~~~p-~Ws~~~ 426 (428)
T PRK01029 379 AID---------SLHLVYSAGNSNESELYLISLITKKTRKIVIGS--GEKRFP-SWGAFP 426 (428)
T ss_pred CCC---------CCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CcccCc-eecCCC
Confidence 998 555543223334567999999877644333222 222333 677653
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=8.3e-11 Score=104.85 Aligned_cols=237 Identities=10% Similarity=0.086 Sum_probs=139.4
Q ss_pred cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC---CeEEEEECCCCcccceeecCCCCCCCCCcceeee
Q 016032 44 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD---GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120 (396)
Q Consensus 44 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 120 (396)
.|.++|.......... .+...+....|+|+ ++.|+..+.+ ..|.+|++.+++........ ....
T Consensus 180 ~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~----------g~~~ 246 (430)
T PRK00178 180 TLQRSDYDGARAVTLL--QSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE----------GLNG 246 (430)
T ss_pred EEEEECCCCCCceEEe--cCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC----------CCcC
Confidence 4778888765544333 36778999999999 7777665543 36899999887654332111 0144
Q ss_pred EEEeCCCCCEEEEE-ecCC--eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC-CC--cEEEEecCCC
Q 016032 121 GMDINPEKGVVLVA-DNFG--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIRRL 194 (396)
Q Consensus 121 ~~~~~~~~~~l~~~-~~~g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~ 194 (396)
...|+|+|+.|+.. ..+| .|+++|+.++... ....+........|+| ++..|+..+. ++ .|+++++.++
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 67899999988754 4444 6888899876432 1122223456678999 8887766553 33 5777777654
Q ss_pred CCCCccccCCCCCceeEEEEcCCCCEEEEEeCC-C--cEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCC
Q 016032 195 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N--RLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSE 271 (396)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (396)
+.. .+.. .........|+|+|+.|+..+.+ + .|.+||+.+++... +.. . ... ....|+|+
T Consensus 322 ~~~-~lt~--~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-----lt~-~-~~~---~~p~~spd---- 384 (430)
T PRK00178 322 RAE-RVTF--VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-----LTD-T-SLD---ESPSVAPN---- 384 (430)
T ss_pred CEE-Eeec--CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-----ccC-C-CCC---CCceECCC----
Confidence 422 2211 11223457899999999877653 3 48888988765421 111 1 011 13578887
Q ss_pred ceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccC
Q 016032 272 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR 323 (396)
Q Consensus 272 ~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (396)
|++++..........|.++++. |.....+..+. ..+... +|+|-
T Consensus 385 -----g~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~-g~~~~p-~ws~~ 428 (430)
T PRK00178 385 -----GTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQ-GEVREP-SWSPY 428 (430)
T ss_pred -----CCEEEEEEecCCceEEEEEECC-CCceEECcCCC-CCcCCC-ccCCC
Confidence 5555422222233457777774 33333343322 333433 56653
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=8.5e-11 Score=103.59 Aligned_cols=210 Identities=11% Similarity=0.084 Sum_probs=124.9
Q ss_pred eeeccccCCeEEEEecCCCCc--EEEEEeCCC--cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC-CC-
Q 016032 14 AVIRYHSRRVTCLEFHPTNNH--ILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DG- 87 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg- 87 (396)
+.|......+.+-+|+|||.+ ++++...+| .|.+.++.+++...... ..+.....+|+|+ ++.|+..+. +|
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--~~g~~~~p~wSPD-G~~Laf~s~~~g~ 254 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--LQGNQLMPTFSPR-KKLLAFISDRYGN 254 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec--CCCCccceEECCC-CCEEEEEECCCCC
Confidence 344445566778899999864 333554444 47777887765544432 3445567899999 766665442 22
Q ss_pred ---eEEEEECCCCc--ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe-cCCe--EEEEeCCCCCCCccceeeec
Q 016032 88 ---TVSCTDLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGF--LYLVDARTNSRSGEAILIHR 159 (396)
Q Consensus 88 ---~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~--i~i~d~~~~~~~~~~~~~~~ 159 (396)
.+..|++..+. ....+..... ......+|+|||+.|+..+ .+|. |+++++..... .......
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~--------~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt~ 324 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAF--------GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLTK 324 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCC--------CCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEEecc
Confidence 34457766532 1111211110 1134678999999888765 4564 44445432111 1111222
Q ss_pred CCccEEEEEeccCCCCEEEEeeCC---CcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeC---CCcEEEE
Q 016032 160 KGSKVVGLHCNPIQPELLLSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ---DNRLRIW 233 (396)
Q Consensus 160 ~~~~i~~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~iw 233 (396)
....+....|+| +++.|+..+.+ ..|.+||+.+++.. .+. .....+....|+|+|+.|+.... ...|.++
T Consensus 325 ~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 325 KYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDY-QLT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred CCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeE-Ecc--CCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 223567889999 89888766543 46999999765432 221 12335677899999998875443 3468888
Q ss_pred Ecccccc
Q 016032 234 DSIFGNL 240 (396)
Q Consensus 234 d~~~~~~ 240 (396)
|+.+++.
T Consensus 401 dl~~g~~ 407 (428)
T PRK01029 401 SLITKKT 407 (428)
T ss_pred ECCCCCE
Confidence 8876653
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=1.6e-12 Score=123.73 Aligned_cols=199 Identities=17% Similarity=0.225 Sum_probs=149.1
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
.++.|-..|.++.=+|.. .+.+||+.||.|++|....+..+..+...-...|+.+.|+.+ |+.+..+..||.+.+|.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred EeecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc-CCceeeeccCCceeeccc
Confidence 345566789999999988 478999999999999999988888777666699999999999 888888899999999998
Q ss_pred CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEE---ecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 95 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA---DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
. .+.....+.+... ...+.|-. ..++++ +.++.+.+||........-.. ..|...++++++.|
T Consensus 2281 ~-pk~~~s~qchnk~---------~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKA---------LSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred C-CcceeccccCCcc---------ccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence 7 3333333333322 44555543 445554 356799999976544333222 44555799999999
Q ss_pred CCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccC
Q 016032 172 IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 242 (396)
Q Consensus 172 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 242 (396)
..++|++|+.+|.|++||++..+....++ . ++ ...++++|+..|.++||++....++.
T Consensus 2347 -~~qllisggr~G~v~l~D~rqrql~h~~~-------~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2347 -KHQLLISGGRKGEVCLFDIRQRQLRHTFQ-------A----LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred -cceEEEecCCcCcEEEeehHHHHHHHHhh-------h----hh-hhheeeccCcccceEEEEccccchhh
Confidence 99999999999999999997543322221 1 44 56689999999999999998766544
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=9.3e-11 Score=104.55 Aligned_cols=203 Identities=11% Similarity=0.123 Sum_probs=127.4
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCC--CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEE-EEeCCC-
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKK--GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDG- 87 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg- 87 (396)
..+.+..|...+...+|+|+|.+++++...+ ..|.+|++.++...... ...+.+....|+|+ ++.|+ +.+.+|
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpD-G~~la~~~~~~g~ 266 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPD-GSKLAFVLSKDGN 266 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCC-CCEEEEEEccCCC
Confidence 3455666788899999999996544444333 35889999877554432 23344567899999 66665 555555
Q ss_pred -eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-CC--eEEEEeCCCCCCCccceeeecCCcc
Q 016032 88 -TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 88 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g--~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
.|.+||+.+++..... ... .......|+|+++.++..+. +| .|+++++.+++.. .+ .. ....
T Consensus 267 ~~Iy~~d~~~~~~~~lt-~~~---------~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~l-t~--~~~~ 332 (430)
T PRK00178 267 PEIYVMDLASRQLSRVT-NHP---------AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RV-TF--VGNY 332 (430)
T ss_pred ceEEEEECCCCCeEEcc-cCC---------CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee-ec--CCCC
Confidence 5888899887653321 111 11445689999998877654 33 6778887765432 11 11 1223
Q ss_pred EEEEEeccCCCCEEEEeeCC-C--cEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC-C--cEEEEEcc
Q 016032 164 VVGLHCNPIQPELLLSCGND-H--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N--RLRIWDSI 236 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~iwd~~ 236 (396)
.....|+| +++.|+..+.. + .|.+||+.+.+. ..+. .........|+|+|+.++..+.+ + .|.++++.
T Consensus 333 ~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt---~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 333 NARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT---DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ccceEECC-CCCEEEEEEccCCceEEEEEECCCCCE-EEcc---CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 44678999 88888776643 3 588889876443 2222 11222356899999999877653 3 46666664
No 256
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1e-13 Score=123.32 Aligned_cols=203 Identities=19% Similarity=0.202 Sum_probs=145.1
Q ss_pred ccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEE-EeCCC-
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYA-ASSDG- 87 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~~~dg- 87 (396)
.+..++|+.|+..-+|++|+-.. +.|+.|+..|.|+++++.++...... ..|..+|+.+.-+.+ +..+++ ++...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~d-gs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVD-GSTQLTSSSSSSP 1167 (1516)
T ss_pred cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccc-cccccccccccccCC-cceeeeeccccCc
Confidence 45567889999999999999987 68999999999999999999888887 789999999999988 555444 44443
Q ss_pred eEEEEECCC-CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCcccee-eecCCccEE
Q 016032 88 TVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-IHRKGSKVV 165 (396)
Q Consensus 88 ~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~-~~~~~~~i~ 165 (396)
...+|++.+ +...+.+.. -.++.|+.....-+.|+......+||++++........ .......-+
T Consensus 1168 lsaLW~~~s~~~~~Hsf~e-------------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSFDE-------------DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred hHHHhccccccCccccccc-------------cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence 467899864 334444321 45677877766667777778899999999877654322 112222346
Q ss_pred EEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccC
Q 016032 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDS 242 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 242 (396)
+..|+| ...+++- || .+||+|..+....+..+ ..-..-.|+|+|..++.-+ .|||+++.+++.
T Consensus 1235 ~a~FsP-~D~LIln---dG--vLWDvR~~~aIh~FD~f---t~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1235 LAHFSP-CDTLILN---DG--VLWDVRIPEAIHRFDQF---TDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred ccccCC-CcceEee---Cc--eeeeeccHHHHhhhhhh---eecccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 788999 6665553 44 47999875443333222 1222346999999988766 489999988754
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=2.9e-12 Score=122.11 Aligned_cols=200 Identities=15% Similarity=0.166 Sum_probs=151.7
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 142 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i 142 (396)
+-..|.++.=+|. ..+.++|+.||.|++|....++.+..+..... ..+..+.|+.+|+.+..+..||.+.+
T Consensus 2207 ~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--------s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--------SRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred ccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCc--------chhhhhhhcccCCceeeeccCCceee
Confidence 5667888888998 88999999999999999998888877754332 34889999999999999999999999
Q ss_pred EeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee---CCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCC
Q 016032 143 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 219 (396)
Q Consensus 143 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (396)
|.+... ......-|......+.|-. ..+++++ .++.+.+||..-......+. ..|.+.++++++-|..+
T Consensus 2278 ~q~~pk----~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2278 WQASPK----PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred cccCCc----ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcce
Confidence 998731 1222333444566666653 5566654 47899999986544444444 47999999999999999
Q ss_pred EEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc
Q 016032 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 299 (396)
Q Consensus 220 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~ 299 (396)
+|++|+.+|.|++||++..++...... ++ . -.++. +|+..|.|+||++..
T Consensus 2350 llisggr~G~v~l~D~rqrql~h~~~~-----------------~~-~---------~~~f~---~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLRHTFQA-----------------LD-T---------REYFV---TGSSEGNIKIWRLSE 2399 (2439)
T ss_pred EEEecCCcCcEEEeehHHHHHHHHhhh-----------------hh-h---------hheee---ccCcccceEEEEccc
Confidence 999999999999999987766322111 11 0 33444 689999999999988
Q ss_pred cchhhhhcCC
Q 016032 300 GQLVAEVMDP 309 (396)
Q Consensus 300 ~~~~~~~~~~ 309 (396)
-.++.++...
T Consensus 2400 ~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2400 FGLLHTFPSE 2409 (2439)
T ss_pred cchhhcCchh
Confidence 8777776543
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.4e-10 Score=103.04 Aligned_cols=201 Identities=14% Similarity=0.204 Sum_probs=120.9
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCC--cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEE-EEeCCCe--
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVY-AASSDGT-- 88 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~~~dg~-- 88 (396)
+.+..+...+.+..|+|||.+++++...++ .|.+||+.+++...... .........|+|+ ++.|+ +.+.++.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPD-G~~La~~~~~~g~~~ 287 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS--FPGINGAPRFSPD-GKKLALVLSKDGQPE 287 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC--CCCCcCCeeECCC-CCEEEEEEeCCCCeE
Confidence 445556677889999999965444444343 58888988765433321 2233457899999 66554 5566664
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-CC--eEEEEeCCCCCCCccceeeecCCccEE
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FG--FLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g--~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
|.++|+.+++...... .. ......+|+|+++.|+..+. ++ .|+++|+.+++... +.. ......
T Consensus 288 Iy~~dl~tg~~~~lt~-~~---------~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~--Lt~--~g~~~~ 353 (448)
T PRK04792 288 IYVVDIATKALTRITR-HR---------AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR--LTF--EGEQNL 353 (448)
T ss_pred EEEEECCCCCeEECcc-CC---------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE--Eec--CCCCCc
Confidence 7777888776433221 11 11456789999998877654 33 57777877654321 111 222344
Q ss_pred EEEeccCCCCEEEEeeC-CC--cEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC-Cc--EEEEEcc
Q 016032 166 GLHCNPIQPELLLSCGN-DH--FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-NR--LRIWDSI 236 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~--i~iwd~~ 236 (396)
..+|+| ++++|+..+. ++ .|.++|+.+.+. ..+.. ........|+|+|+.|+..+.+ +. +.+++..
T Consensus 354 ~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~---~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 354 GGSITP-DGRSMIMVNRTNGKFNIARQDLETGAM-QVLTS---TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CeeECC-CCCEEEEEEecCCceEEEEEECCCCCe-EEccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 578999 8888776654 34 455677765432 12211 1122345799999988766543 33 6666763
No 259
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.40 E-value=3.2e-10 Score=99.40 Aligned_cols=274 Identities=15% Similarity=0.059 Sum_probs=163.6
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCC
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 114 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.+++++.+|.+..+|..+++....... .......+.. + +..++.++.++.|..+|..+|+.+.........
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~----- 137 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA--D-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV----- 137 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE--c-CCEEEEEcCCCEEEEEECCCCcEeeeeccCcee-----
Confidence 577888889999999998887766531 2211122222 3 567888888999999999999987765443211
Q ss_pred cceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCC--ccEEEEEeccCCCCEEEEeeCCCcEEEEecC
Q 016032 115 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG--SKVVGLHCNPIQPELLLSCGNDHFARIWDIR 192 (396)
Q Consensus 115 ~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 192 (396)
...... .+..++.++.+|.++.+|.++++...+........ ......... + ..++.+..++.+..+|.+
T Consensus 138 ----~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~ 208 (377)
T TIGR03300 138 ----LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQ 208 (377)
T ss_pred ----ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEcc
Confidence 111111 24567788889999999999887654321110000 000111111 2 467778888999999987
Q ss_pred CCCCCCccccC-CC-CCc---eeEEEEcC--CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeC
Q 016032 193 RLEAGSSLCDL-PH-KRV---VNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWD 265 (396)
Q Consensus 193 ~~~~~~~~~~~-~~-~~~---i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (396)
+++........ .. ... ...+.-+| .+..+++++.+|.+..||..+|+..-... ...
T Consensus 209 tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-------~~~---------- 271 (377)
T TIGR03300 209 TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-------ASS---------- 271 (377)
T ss_pred CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-------cCC----------
Confidence 76532211100 00 000 00011111 35578888889999999999887532110 000
Q ss_pred CCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcc
Q 016032 266 PKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKS 344 (396)
Q Consensus 266 ~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~ 344 (396)
.....+.+..+. .++.+|.+..+|..+|+.+.............. ...+..|++++ +|.|+++|..+|+
T Consensus 272 ----~~~p~~~~~~vy---v~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp---~i~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 272 ----YQGPAVDDNRLY---VTDADGVVVALDRRSGSELWKNDELKYRQLTAP---AVVGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred ----ccCceEeCCEEE---EECCCCeEEEEECCCCcEEEccccccCCccccC---EEECCEEEEEeCCCEEEEEECCCCC
Confidence 011122244444 457889999999999987765532111122211 12456777777 9999999999999
Q ss_pred eeeeccccc
Q 016032 345 ELVEQKEEM 353 (396)
Q Consensus 345 ~~~~~~~~~ 353 (396)
.+..++.+.
T Consensus 342 ~~~~~~~~~ 350 (377)
T TIGR03300 342 FVARLKTDG 350 (377)
T ss_pred EEEEEEcCC
Confidence 998887654
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=8.3e-10 Score=94.99 Aligned_cols=264 Identities=17% Similarity=0.199 Sum_probs=156.3
Q ss_pred cCCeEEEEecCCCCcEEEEEeC----CCcEEEeecccc--ee--eeEecCCcccceeEEEEecCCCcEEEEEe-CCCeEE
Q 016032 20 SRRVTCLEFHPTNNHILLSGDK----KGQVGVWDFYKV--SE--KIVYGNIHSCIVNNIRFNPTNDGTVYAAS-SDGTVS 90 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-~dg~v~ 90 (396)
......++++|++. +|.+... ++.|..|.+... .. +... .........++++|+ +.+|+++. .+|.|.
T Consensus 36 ~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~-g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 36 GENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD-GRFLYVANYGGGSVS 112 (345)
T ss_dssp SSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT-SSEEEEEETTTTEEE
T ss_pred CCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC-CCEEEEEEccCCeEE
Confidence 34566789999984 5666554 578999998764 22 2222 113445667999999 78877776 489999
Q ss_pred EEECCC-Ccccce---eecCC-CCCCCCCcceeeeEEEeCCCCCEEEEEec-CCeEEEEeCCCCCCCc-c-ceeeecCCc
Q 016032 91 CTDLET-GLALSL---MNVNP-NGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSG-E-AILIHRKGS 162 (396)
Q Consensus 91 iwd~~~-~~~~~~---~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~i~d~~~~~~~~-~-~~~~~~~~~ 162 (396)
++++.. +..... +.... .............++.++|+++++++... ...|++|++....... . .......+.
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 999987 333222 11100 00000111123788999999998888654 4589999997755211 1 111224455
Q ss_pred cEEEEEeccCCCCEEEEe-eCCCcEEEEecCCCC----CCCccccC----CCCCceeEEEEcCCCCEEEEEe-CCCcEEE
Q 016032 163 KVVGLHCNPIQPELLLSC-GNDHFARIWDIRRLE----AGSSLCDL----PHKRVVNSAYFSPSGSKILTTS-QDNRLRI 232 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~----~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i 232 (396)
..+.++|+| ++.++++. -.++.|.++++.... ....+... ........|+++|+|++|+++. ..+.|.+
T Consensus 193 GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 193 GPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 789999999 77766554 457889999987211 11111111 1223678899999999988776 4678999
Q ss_pred EEccc--ccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc--Cccchhh
Q 016032 233 WDSIF--GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI--TTGQLVA 304 (396)
Q Consensus 233 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~--~~~~~~~ 304 (396)
|++.. +.+. .... .. .....|..+.++|+ |++++. +...++.|.+|++ .+|.+..
T Consensus 272 f~~d~~~g~l~-~~~~-~~----~~G~~Pr~~~~s~~---------g~~l~V--a~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 272 FDLDPATGTLT-LVQT-VP----TGGKFPRHFAFSPD---------GRYLYV--ANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EEECTTTTTEE-EEEE-EE----ESSSSEEEEEE-TT---------SSEEEE--EETTTTEEEEEEEETTTTEEEE
T ss_pred EEEecCCCceE-EEEE-Ee----CCCCCccEEEEeCC---------CCEEEE--EecCCCeEEEEEEeCCCCcEEE
Confidence 99942 3321 1111 00 11223557788888 777663 3445677998876 4665443
No 261
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.40 E-value=1.5e-10 Score=89.39 Aligned_cols=207 Identities=12% Similarity=0.034 Sum_probs=140.1
Q ss_pred EEEEecCCC----CcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc
Q 016032 24 TCLEFHPTN----NHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 99 (396)
Q Consensus 24 ~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 99 (396)
..+.|.|-. .-+||.|+..|...+|...+.+....+-..|...|.-+.=.-+....+..++.|.++++.+++.+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 345665521 1368999999999999998765544443334443332221112134566778899999998876554
Q ss_pred cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEE
Q 016032 100 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 179 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 179 (396)
........ ....+++++++++++++.+....|..|.+.........+........-.+..|+. ....+|+
T Consensus 151 ~~~~h~~~---------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv 220 (344)
T KOG4532|consen 151 KFAVHNQN---------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAV 220 (344)
T ss_pred cceeeccc---------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEE
Confidence 43332221 1178899999999999999999999999876443322222222223455778888 7889999
Q ss_pred eeCCCcEEEEecCCCCCCCccc---cCCCCCceeEEEEcCCCC--EEEEEeCCCcEEEEEcccccc
Q 016032 180 CGNDHFARIWDIRRLEAGSSLC---DLPHKRVVNSAYFSPSGS--KILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 180 ~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~ 240 (396)
+..||++.|||+|......... ...|.+.+..+.|++.|. +|+..-.-+.+.+-|++++.-
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 9999999999999765433221 225899999999998553 455555567899999998764
No 262
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.9e-11 Score=98.51 Aligned_cols=314 Identities=16% Similarity=0.187 Sum_probs=201.3
Q ss_pred cccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccce--eeeEecCCcccceeEEEEecCCCcEEEEEeC-CCeEEEEEC
Q 016032 18 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-DGTVSCTDL 94 (396)
Q Consensus 18 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~v~iwd~ 94 (396)
.|.+.|+.+.-... .++.+++.||.++.|.-..-. ........|...|.+++.+-+ +.++.|.+. |..++++|+
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEe
Confidence 48888988877654 589999999999999875422 222223568899999999988 888888777 999999999
Q ss_pred CCCcccceeecCCCCCCCCCcceeeeEEEeCCCC--CEEEEE-ecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 95 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK--GVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
+.-..+..++...-+ . ..++..++.. ..++++ ..+|.+.++|-....+... ..-..|..+|..+.+++
T Consensus 84 En~DminmiKL~~lP-------g-~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~-~fkklH~sPV~~i~y~q 154 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLP-------G-FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG-YFKKLHFSPVKKIRYNQ 154 (558)
T ss_pred eccchhhhcccccCC-------C-ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc-eecccccCceEEEEeec
Confidence 887665544433221 0 1122222221 133333 5678999999877553221 12233455899999999
Q ss_pred CCCCEEEEeeCCCcEEEEecCC-CCCCC-----------ccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 016032 172 IQPELLLSCGNDHFARIWDIRR-LEAGS-----------SLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 172 ~~~~~l~~~~~d~~i~~wd~~~-~~~~~-----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 238 (396)
-+..+++....|.|.-|.... .+... -+..+ .......++.|+|++..+.+-+.|..|+++++.+|
T Consensus 155 -a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 155 -AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred -cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 888899998899999998762 11100 01111 24566889999999999999999999999999999
Q ss_pred cccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchh---hhhcCCCCCCCc
Q 016032 239 NLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLV---AEVMDPNITTIS 315 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~---~~~~~~~~~~i~ 315 (396)
++.+...+........ |.. .+.+-++.=++.. +.+..+......
T Consensus 234 klvqeiDE~~t~~~~q-----------~ks----------------------~y~l~~VelgRRmaverelek~~~~~~~ 280 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQ-----------PKS----------------------PYGLMHVELGRRMAVERELEKHGSTVGT 280 (558)
T ss_pred hhhhhhhccchhhhhc-----------ccc----------------------ccccceeehhhhhhHHhhHhhhcCcccc
Confidence 9876555433222111 111 0111111112211 223333322233
Q ss_pred ceeeeccCCcEEEeecCCcEEEEcCCCcceeeeccccc------------------------------------eEEEee
Q 016032 316 PVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQKEEM------------------------------------KIIVCG 359 (396)
Q Consensus 316 ~~~~~~~~~~~l~sg~d~~i~iw~~~~~~~~~~~~~~~------------------------------------~~~~~~ 359 (396)
.+ .|...|++|+.|+-=.|+|.++.++..++.+.... +.++|.
T Consensus 281 ~~-~fdes~~flly~t~~gikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~ 359 (558)
T KOG0882|consen 281 NA-VFDESGNFLLYGTILGIKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCT 359 (558)
T ss_pred ee-EEcCCCCEEEeecceeEEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEe
Confidence 33 69999999999885558888888877655542211 137788
Q ss_pred cCCCccccccCCCCCCCCc
Q 016032 360 KADKKQKHKFGDESEDSDD 378 (396)
Q Consensus 360 ~~~~~~~~~~~~~~d~~d~ 378 (396)
...+.+-|.|.+-++-+++
T Consensus 360 a~kk~rfylf~ep~~~~~~ 378 (558)
T KOG0882|consen 360 AFKKNRFYLFREPEFTESD 378 (558)
T ss_pred eeecceEEEEecCCCCcch
Confidence 8888888888554433333
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=9e-11 Score=102.61 Aligned_cols=290 Identities=13% Similarity=0.135 Sum_probs=189.7
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee--------------eeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE--------------KIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
....|++|+... .++|+|+.||.++|..+.+... ....+.||...|..+.|+.+ .+.|-+...+
T Consensus 15 vkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCCC
Confidence 457899999987 5899999999999998865321 01122689999999999988 8899999999
Q ss_pred CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEE
Q 016032 87 GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 166 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 166 (396)
|.|.+|-+-.|.....+.-+.. .+.|.+++|+.+|..+.....||.|.+=.+..+....+.... .....
T Consensus 93 GlIiVWmlykgsW~EEMiNnRn-------KSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg----~~l~h 161 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRN-------KSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG----QLLAH 161 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcC-------ccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch----heccc
Confidence 9999999988876655433322 245999999999999999999999988777665444332221 13557
Q ss_pred EEeccCCCCEEEEeeCCCcEEEEecCCCCC----CCc-cccC----CCCCceeEEEEc--------CCCCEEEEEeCCCc
Q 016032 167 LHCNPIQPELLLSCGNDHFARIWDIRRLEA----GSS-LCDL----PHKRVVNSAYFS--------PSGSKILTTSQDNR 229 (396)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~----~~~-~~~~----~~~~~i~~~~~~--------~~~~~l~~~~~d~~ 229 (396)
+.|++ +...++.+-..|.+.+||....=. ..+ +... .....|..+.|. |+-..|+++-..|.
T Consensus 162 v~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 162 VLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred eeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 89999 888888888889999999742100 000 0000 011225555554 46778999998998
Q ss_pred EEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCC
Q 016032 230 LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDP 309 (396)
Q Consensus 230 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~ 309 (396)
+.|-.-.+... ...+......+...|++++ ..+++.|.-.... .-...+.|.+|.. -|+.+.++..+
T Consensus 241 ~QiMR~eND~~---------Pvv~dtgm~~vgakWnh~G--~vLAvcG~~~da~-~~~d~n~v~Fysp-~G~i~gtlkvp 307 (1189)
T KOG2041|consen 241 MQIMRSENDPE---------PVVVDTGMKIVGAKWNHNG--AVLAVCGNDSDAD-EPTDSNKVHFYSP-YGHIVGTLKVP 307 (1189)
T ss_pred ehhhhhcCCCC---------CeEEecccEeecceecCCC--cEEEEccCccccc-CccccceEEEecc-chhheEEEecC
Confidence 88764432221 0111111223467899983 2233333221100 1112245666654 47777777766
Q ss_pred CCCCCcceeeeccCCcEEEeecCCcEEEEc
Q 016032 310 NITTISPVNKLHPRDDVLASGSSRSIFIWR 339 (396)
Q Consensus 310 ~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~ 339 (396)
. ..|+++ +|-..|-.++.+-|+.|++=+
T Consensus 308 g-~~It~l-sWEg~gLriA~Avdsfiyfan 335 (1189)
T KOG2041|consen 308 G-SCITGL-SWEGTGLRIAIAVDSFIYFAN 335 (1189)
T ss_pred C-ceeeee-EEcCCceEEEEEecceEEEEe
Confidence 5 677777 787777666666666655533
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.35 E-value=6e-11 Score=91.04 Aligned_cols=210 Identities=20% Similarity=0.201 Sum_probs=128.2
Q ss_pred ceeeeccccC-CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEec-----------CCcccceeEEEEecCCCcE
Q 016032 12 NCAVIRYHSR-RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-----------NIHSCIVNNIRFNPTNDGT 79 (396)
Q Consensus 12 ~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~ 79 (396)
++-.+-+|.+ .|+.+.+..+- .|+++..++.+.........+..... ..|.++-.+-+.+-. ++.
T Consensus 27 ~vD~i~~~~d~~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~-~t~ 103 (319)
T KOG4714|consen 27 LVDEIMQHADVKLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMT-DNR 103 (319)
T ss_pred chhhcccccceEEEEeechhhh--eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCccccccc-CCc
Confidence 3444445544 36677777653 68888888777766654432222111 123332222222222 577
Q ss_pred EEEEeCCCeEEEEECCCCcccc-eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe-----cCCeEEEEeCCCCCCCcc
Q 016032 80 VYAASSDGTVSCTDLETGLALS-LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-----NFGFLYLVDARTNSRSGE 153 (396)
Q Consensus 80 l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~g~i~i~d~~~~~~~~~ 153 (396)
++++..||.+.+++.+.-..+. .+..... ...+.++...++.+.++. .-+..+.|+++..+...
T Consensus 104 V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~---------~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~- 173 (319)
T KOG4714|consen 104 VCIGYADGSLAVFSTDKDLALMSRIPSIHS---------GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI- 173 (319)
T ss_pred eEecCCCceEEEEechHHHhhhhhcccccc---------cccccceeecccEEecCCcceEeeccceeeeccccccccc-
Confidence 9999999999999987621111 1110000 011222333444444432 22455666665533222
Q ss_pred ceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEeCCCcEEE
Q 016032 154 AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRI 232 (396)
Q Consensus 154 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i 232 (396)
........+.+++-+|...+++++|+.||.+-+||.|+......+ ...|+.+|..+-|+| ++..|+++++||.+..
T Consensus 174 --~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 174 --PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred --ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-HHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 223333359999999977788899999999999999976432222 127999999999999 8889999999999999
Q ss_pred EEccc
Q 016032 233 WDSIF 237 (396)
Q Consensus 233 wd~~~ 237 (396)
||..+
T Consensus 251 wdas~ 255 (319)
T KOG4714|consen 251 WDAST 255 (319)
T ss_pred EcCCC
Confidence 99864
No 265
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.6e-10 Score=100.65 Aligned_cols=215 Identities=15% Similarity=0.141 Sum_probs=142.3
Q ss_pred ccceeeeccccCCeEEEEecCCC-----------CcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC--
Q 016032 10 QVNCAVIRYHSRRVTCLEFHPTN-----------NHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-- 76 (396)
Q Consensus 10 ~~~~~~~~~h~~~v~~~~~~~~~-----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 76 (396)
-+.++++.-|+..|+.+.|.|.. .-+||++...|.|.+||......+..+ ..|..++..++|-|..
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCc
Confidence 35567888899999999997732 236788888999999999987776666 5688999999998652
Q ss_pred -CcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCC-CCCEEEEEecCCeEEEEeCCCCCC---C
Q 016032 77 -DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVDARTNSR---S 151 (396)
Q Consensus 77 -~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~i~d~~~~~~---~ 151 (396)
...|++-....+|.+|+..+|+........... ..|+.+.| +.+.+..-+..|.+.+-+.-.... .
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i---------Ls~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p 194 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI---------LSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP 194 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcc---------eeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC
Confidence 256777777889999999999988776554432 56678877 345565556666666655422111 1
Q ss_pred ccceeee-cCC-------------------------ccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCC
Q 016032 152 GEAILIH-RKG-------------------------SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH 205 (396)
Q Consensus 152 ~~~~~~~-~~~-------------------------~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 205 (396)
.+..... .+. .....++|+|.-.+.++. .....+.++|+.-......+.. .
T Consensus 195 gk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~l~vvpi--e 271 (1062)
T KOG1912|consen 195 GKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECCLAVVPI--E 271 (1062)
T ss_pred ceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhceeEEEEe--c
Confidence 1111110 000 012245678844444444 4567899999965444333322 3
Q ss_pred CCceeEEEEcCC--CCEEEEEeCCCcEEEEEccc
Q 016032 206 KRVVNSAYFSPS--GSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 206 ~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~ 237 (396)
.+.+.-+.+-|+ ...|++.-.||.+.+|-.+.
T Consensus 272 r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 272 RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 344555666664 45689999999999997664
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.34 E-value=2.6e-09 Score=103.87 Aligned_cols=213 Identities=12% Similarity=0.139 Sum_probs=128.9
Q ss_pred EEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecC-C------------cccceeEEEEecCCCcEEEEE-eCCCeE
Q 016032 24 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN-I------------HSCIVNNIRFNPTNDGTVYAA-SSDGTV 89 (396)
Q Consensus 24 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~------------~~~~v~~~~~~~~~~~~l~s~-~~dg~v 89 (396)
..+++++.+++++++-+.++.|++||..... ...+.. + .-.....+++.++ ++.|+.+ ...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~-gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK-KNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCC-CCEEEEEeCCCceE
Confidence 4578887654678888888999999987543 222211 1 1124688999988 6655554 446789
Q ss_pred EEEECCCCcccceeecCC-CC--CCCC-----CcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCcc-----ce
Q 016032 90 SCTDLETGLALSLMNVNP-NG--WHGP-----RTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGE-----AI 155 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~-~~--~~~~-----~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~-----~~ 155 (396)
+++|+.++... .+.... .. ..+. ........++++|+ +..+++...++.|++||...+....- ..
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99998776432 221110 00 0000 00122567899994 55666667788999999876532100 00
Q ss_pred ee------ecCCccEEEEEeccCCCC-EEEEeeCCCcEEEEecCCCCCCC----------ccccCC---------CCCce
Q 016032 156 LI------HRKGSKVVGLHCNPIQPE-LLLSCGNDHFARIWDIRRLEAGS----------SLCDLP---------HKRVV 209 (396)
Q Consensus 156 ~~------~~~~~~i~~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~----------~~~~~~---------~~~~i 209 (396)
.. ...-.....++++| ++. ++++-+.++.|++||+.+..... .+..++ .-...
T Consensus 728 ~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 00 00112456799999 776 66666778999999987543110 000010 01134
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 210 NSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 210 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
..++++++|.++++-..++.|++||..++..
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 6788999998888888888999999876543
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=8e-10 Score=93.98 Aligned_cols=242 Identities=18% Similarity=0.193 Sum_probs=154.1
Q ss_pred EEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC-CcEEEE-----EeCCCeEEEEECCCC
Q 016032 24 TCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN-DGTVYA-----ASSDGTVSCTDLETG 97 (396)
Q Consensus 24 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s-----~~~dg~v~iwd~~~~ 97 (396)
++..|++|. . |+.=-..+.+.+|++.........+ |...|..+.++|.. ...+++ .+.-..|++|.....
T Consensus 129 W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccch-h-hhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 789999987 3 4444445789999998855554443 88899999999862 334444 345678999987632
Q ss_pred cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEE-Ee-----------cCCeEEEEeCCCCCCCccceeeecCCccEE
Q 016032 98 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV-AD-----------NFGFLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-----------~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
.....+. ...-+. ..-..+.|++-|.-|++ ++ ....++++++.... ........++|.
T Consensus 205 ~~~~~~a-~ksFFk-----adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s----~~V~L~k~GPVh 274 (566)
T KOG2315|consen 205 GQHQPVA-NKSFFK-----ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES----VSVPLLKEGPVH 274 (566)
T ss_pred cccchhh-hccccc-----cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce----EEEecCCCCCce
Confidence 2211110 000000 01345678877654332 21 12378888877322 223334456999
Q ss_pred EEEeccCCCCEEEE--eeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC---CcEEEEEcccccc
Q 016032 166 GLHCNPIQPELLLS--CGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---NRLRIWDSIFGNL 240 (396)
Q Consensus 166 ~~~~~~~~~~~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~ 240 (396)
++.|+| ++.-|++ |-.-..+.|||++ ...+..+ ..++=+++-|+|.|++|+.++.+ |.|-+||+.+.++
T Consensus 275 dv~W~~-s~~EF~VvyGfMPAkvtifnlr----~~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 275 DVTWSP-SGREFAVVYGFMPAKVTIFNLR----GKPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred EEEECC-CCCEEEEEEecccceEEEEcCC----CCEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence 999999 7765554 4456789999986 3344333 45667889999999999988764 7899999998776
Q ss_pred cCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeeccc---ccccceEEEEcCccchhhh
Q 016032 241 DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNG---AALHPIDFIDITTGQLVAE 305 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g---~~d~~i~vwd~~~~~~~~~ 305 (396)
+.... ......+.|+|+ |+|+....++ .-|+.++||+. +|..+..
T Consensus 349 i~~~~----------a~~tt~~eW~Pd---------Ge~flTATTaPRlrvdNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 349 IAKFK----------AANTTVFEWSPD---------GEYFLTATTAPRLRVDNGIKIWHY-TGSLLHE 396 (566)
T ss_pred ccccc----------cCCceEEEEcCC---------CcEEEEEeccccEEecCCeEEEEe-cCceeeh
Confidence 44221 111236899999 7777744333 25788999998 4555443
No 268
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.3e-10 Score=105.49 Aligned_cols=191 Identities=10% Similarity=0.051 Sum_probs=143.0
Q ss_pred EecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccce--e---EEEEecCCCcEEEEEeCCCeEEEEECCCCcccc
Q 016032 27 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIV--N---NIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 101 (396)
Q Consensus 27 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~---~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 101 (396)
.+.-+. ..++.+..+..+.+||.........+. +.... . -+-++++ .-++++|+--+.|.+|+....+...
T Consensus 94 ~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 94 KLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred chhhhc-ceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccccCCcc
Confidence 333344 457777778899999998776666553 33322 2 2234555 6788999999999999988333222
Q ss_pred eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee
Q 016032 102 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 181 (396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 181 (396)
.+..+. ..+.++.++.+|.++++.+.|..+++|++.+.+... .....|...+..+.+.| + .+++++
T Consensus 170 ~l~GHe---------G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~-n--~i~t~g 235 (967)
T KOG0974|consen 170 RLKGHE---------GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLP-N--RIITVG 235 (967)
T ss_pred eecccC---------CceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEecc-c--eeEEec
Confidence 232222 339999999999999999999999999999987765 24566777999999998 4 999999
Q ss_pred CCCcEEEEecCCCCCCCccccC-CC-CCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 182 NDHFARIWDIRRLEAGSSLCDL-PH-KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 182 ~d~~i~~wd~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
.|.+.++|+....+. ..+ +| ...|..++..+....+++++.|+.+++|++....
T Consensus 236 edctcrvW~~~~~~l----~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 236 EDCTCRVWGVNGTQL----EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred cceEEEEEeccccee----hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 999999997653222 222 23 4578999999999999999999999999987543
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=3.5e-08 Score=80.01 Aligned_cols=272 Identities=13% Similarity=0.151 Sum_probs=165.1
Q ss_pred eccccCCeEEEEecCCCCcEEEEEeC---CCcEEEeecccc--eeeeEec-CCcccceeEEEEecCCCcEEEEEeC-CCe
Q 016032 16 IRYHSRRVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKV--SEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASS-DGT 88 (396)
Q Consensus 16 ~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~-dg~ 88 (396)
+-.+.+.++-|+|+|++ +.|.++-. +|.|..|.+... .....-. .....+...++++++ +++++++.. .|.
T Consensus 35 ~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~-g~~vf~AnY~~g~ 112 (346)
T COG2706 35 LVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDED-GRFVFVANYHSGS 112 (346)
T ss_pred hccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCC-CCEEEEEEccCce
Confidence 33567788999999998 56776654 577888888753 2222111 122334488999999 888888775 588
Q ss_pred EEEEECCC-CcccceeecCCCCCCC---CCcceeeeEEEeCCCCCEEEEEec-CCeEEEEeCCCCCCCccceeeecCCcc
Q 016032 89 VSCTDLET-GLALSLMNVNPNGWHG---PRTWRMLYGMDINPEKGVVLVADN-FGFLYLVDARTNSRSGEAILIHRKGSK 163 (396)
Q Consensus 89 v~iwd~~~-~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~i~d~~~~~~~~~~~~~~~~~~~ 163 (396)
|.++-++. |........-.....+ .....-+....+.|++++|++.+- ...|.+|++..+............+..
T Consensus 113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~G 192 (346)
T COG2706 113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAG 192 (346)
T ss_pred EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCC
Confidence 99999866 4333322211111110 001111677889999999988764 358999999976554333233355667
Q ss_pred EEEEEeccCCCCEEEEeeC-CCcEEEEecCCC-CCC---CccccC----CCCCceeEEEEcCCCCEEEEEeC-CCcEEEE
Q 016032 164 VVGLHCNPIQPELLLSCGN-DHFARIWDIRRL-EAG---SSLCDL----PHKRVVNSAYFSPSGSKILTTSQ-DNRLRIW 233 (396)
Q Consensus 164 i~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~-~~~---~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iw 233 (396)
.+.|.|+| ++.+..+..+ +++|-+|..... ... +.+..+ ........|..+|+|++|.++.. ...|.+|
T Consensus 193 PRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 193 PRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred cceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 89999999 8888877665 889999998753 111 112111 24556788999999999988764 3478888
Q ss_pred EcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc--Cccchhhh
Q 016032 234 DSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI--TTGQLVAE 305 (396)
Q Consensus 234 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~--~~~~~~~~ 305 (396)
.+....-.- . ...........|-...++|. |+++.+ .+-....|.+|.. .+|++...
T Consensus 272 ~V~~~~g~L--~--~~~~~~teg~~PR~F~i~~~---------g~~Lia--a~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 272 SVDPDGGKL--E--LVGITPTEGQFPRDFNINPS---------GRFLIA--ANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EEcCCCCEE--E--EEEEeccCCcCCccceeCCC---------CCEEEE--EccCCCcEEEEEEcCCCceEEec
Confidence 775321100 0 00111111111223455555 666663 3344456888865 45655443
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.5e-11 Score=104.27 Aligned_cols=216 Identities=15% Similarity=0.206 Sum_probs=148.1
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc-------eeeeEecCCcccceeEEEEecCCCcEEEEE
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV-------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 83 (396)
..+..+.||+..|..++--.+. +-+++++.|.+|++|.+... .+..++ +.|..+|..+.|..+ ..+++++
T Consensus 726 irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~-lr~i~Sc 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD-LRSIASC 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec-cceeeec
Confidence 4456789999999998776655 46899999999999998642 244444 689999999999987 6666654
Q ss_pred eCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEE-ecCCeEEEEeCCCCCCCccceee--ecC
Q 016032 84 SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILI--HRK 160 (396)
Q Consensus 84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~g~i~i~d~~~~~~~~~~~~~--~~~ 160 (396)
||-|.+||.--++.+..+.-.+..-. ...|.++. +-+...++++ +...+|+++|.+......+.... ...
T Consensus 803 --D~giHlWDPFigr~Laq~~dapk~~a----~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 803 --DGGIHLWDPFIGRLLAQMEDAPKEGA----GGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred --cCcceeecccccchhHhhhcCcccCC----CceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 78899999988887765543322111 11244432 2234444444 77889999999987766554333 223
Q ss_pred CccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEE-EEccccc
Q 016032 161 GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRI-WDSIFGN 239 (396)
Q Consensus 161 ~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i-wd~~~~~ 239 (396)
...+.+++..+ .++.++++-..|.|.+.|.|++........+ ......++ .|..+.|+....|.++.+ |-.-.+.
T Consensus 876 na~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 876 NALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred chheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 34688999999 9999999999999999999886543332221 11122222 245566777777888887 8665554
Q ss_pred c
Q 016032 240 L 240 (396)
Q Consensus 240 ~ 240 (396)
.
T Consensus 952 m 952 (1034)
T KOG4190|consen 952 M 952 (1034)
T ss_pred e
Confidence 3
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.31 E-value=5.5e-11 Score=101.49 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=140.7
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEec------c-------------CCCCEEEEeeCCCcE
Q 016032 126 PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCN------P-------------IQPELLLSCGNDHFA 186 (396)
Q Consensus 126 ~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------------~~~~~l~~~~~d~~i 186 (396)
|...++|....+|.+++|+...++...+........+..++..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 446789999999999999998876554443333333344444442 1 144678889999999
Q ss_pred EEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCC
Q 016032 187 RIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP 266 (396)
Q Consensus 187 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (396)
.+|++..++....+..-.|.+.|+++.++.+-..|.+++.|+.+..|+..+.....-.. ........++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~--------~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK--------EQKPLVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec--------cCCCccceEEEcC
Confidence 99999887776666656899999999999999999999999999999998776532111 1111123556666
Q ss_pred CCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccC-----CcEEEeec--CCcEEEEc
Q 016032 267 KDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR-----DDVLASGS--SRSIFIWR 339 (396)
Q Consensus 267 ~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~sg~--d~~i~iw~ 339 (396)
+ |..+. ...++|++||+++++.+.+|.+|. +.+.++ +|-.+ |.++.++. +..|.+|-
T Consensus 155 D---------~~~l~-----~as~~ik~~~~~~kevv~~ftgh~-s~v~t~-~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 155 D---------GKILL-----TASRQIKVLDIETKEVVITFTGHG-SPVRTL-SFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred C---------CCEEE-----eccceEEEEEccCceEEEEecCCC-cceEEE-EEEEeccccccceeeeccccccceeEEE
Confidence 6 44444 345789999999999999999887 788887 77666 67777754 78888897
Q ss_pred CCC
Q 016032 340 PKE 342 (396)
Q Consensus 340 ~~~ 342 (396)
+..
T Consensus 219 v~~ 221 (541)
T KOG4547|consen 219 VEK 221 (541)
T ss_pred EEc
Confidence 654
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.28 E-value=2e-08 Score=84.12 Aligned_cols=170 Identities=12% Similarity=0.090 Sum_probs=123.6
Q ss_pred cEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCC-eEEEEECCCCcccceeecCCCCCCC
Q 016032 34 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG-TVSCTDLETGLALSLMNVNPNGWHG 112 (396)
Q Consensus 34 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~ 112 (396)
.+++..|. |...|.+...+-.+. -+|...|.-..+.-+ ++-++.|..|| .+-++|..+++...... +-
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~l----- 401 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGEVKRIEK-DL----- 401 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccC-CcceEEeccCCceEEEEecCCceEEEeeC-Cc-----
Confidence 46777664 677777765544333 347788999999888 67889999998 89999999887544332 11
Q ss_pred CCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCC----cEEE
Q 016032 113 PRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH----FARI 188 (396)
Q Consensus 113 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~----~i~~ 188 (396)
..|.++..+++|++++++.....|.+.|+.++.... .-....+-|+.++|+| ++++||-+--+| .|++
T Consensus 402 ----g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 402 ----GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred ----cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccccceeEEEEEcC-CceeEEEecCcceeeeeEEE
Confidence 239999999999999999999999999999976532 1222334699999999 999999876654 6899
Q ss_pred EecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEe
Q 016032 189 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 225 (396)
Q Consensus 189 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 225 (396)
+|+...+...... ..+.=.+-+|.|++++|.--+
T Consensus 474 ydm~~~Kiy~vTT---~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 474 YDMDGGKIYDVTT---PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCCeEEEecC---CcccccCcccCCCCcEEEEEe
Confidence 9997644322221 222234568899999886554
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=1.7e-09 Score=84.67 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=134.2
Q ss_pred CCeEEEEecC---CCCcEEEEEeCCCcEEEeecccceeeeEecCC-----cccceeEEEEecCCCcEEEEEeCCCeEEEE
Q 016032 21 RRVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI-----HSCIVNNIRFNPTNDGTVYAASSDGTVSCT 92 (396)
Q Consensus 21 ~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 92 (396)
..+..+.|.. +|...|+-+..+|.|.++..........+..- ......++.|++. +..++++..+|.+.+-
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~-~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTS-GTKIFVSDSRGSISGV 148 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeecc-CceEEEEcCCCcEEEE
Confidence 3455555632 34335666777888888887655444333211 1113567788888 7888888889998855
Q ss_pred ECCCCcccc--eeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCC-CCccceeeecCCccEEEEE
Q 016032 93 DLETGLALS--LMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNS-RSGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 93 d~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~i~~~~ 168 (396)
+........ ..+.+. ..+..+.|+.. .+.+.+|+.|+.+..||++... .+... ...|...|.+|.
T Consensus 149 ~~t~~~le~vq~wk~He---------~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n--~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHE---------FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN--SKVHTSGVVSIY 217 (339)
T ss_pred ecceeeeeecccccccc---------eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec--ceeeecceEEEe
Confidence 544433322 232222 12566666654 5788999999999999999433 22221 233455799999
Q ss_pred eccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCC-CCEEEEEeCCCcEEEEEcccccc
Q 016032 169 CNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-GSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 169 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
-+|..+.+|++|+.|-.|++||.|+.. +++..-...+.|..+.++|. ...|+.++.-+-.+|-+...+..
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL 288 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhccc--CccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence 999889999999999999999999643 34444455688999999993 22334444555577777765443
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.27 E-value=3.2e-08 Score=94.67 Aligned_cols=308 Identities=12% Similarity=0.133 Sum_probs=180.5
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEe----ecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVW----DFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
..+.|.++.|.++.. -|+.+..+|.|.+. +......... ..-...|.+++|+|| ...|+..+.+++|.+..-
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--G~vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIV--GSVDSGILAASWSPD-EELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEE--EEEcCcEEEEEECCC-cCEEEEEeCCCEEEEEec
Confidence 346799999999984 57778889999999 5554433322 225678999999999 899999888888877642
Q ss_pred CCCcccceeecCCCC-----------------CC------------CCC----------cceeeeEEEeCCCCCEEEEEe
Q 016032 95 ETGLALSLMNVNPNG-----------------WH------------GPR----------TWRMLYGMDINPEKGVVLVAD 135 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~-----------------~~------------~~~----------~~~~v~~~~~~~~~~~l~~~~ 135 (396)
+...+......... ++ .+. ....-..++|-.||.++|+.+
T Consensus 150 -~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 150 -DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred -cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 22222211111100 00 000 111345788999999999986
Q ss_pred c---C---CeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC---CCcEEEEecCCCCCCCccccC-CC
Q 016032 136 N---F---GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDL-PH 205 (396)
Q Consensus 136 ~---~---g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~-~~ 205 (396)
. . ..+++|+-+. .... ....-.+--.+++|.| .|++||+... ...|.+|.-+-.+.+...-.+ ..
T Consensus 229 ~~~~~~~~R~iRVy~ReG-~L~s---tSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSREG-ELQS---TSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPE 303 (928)
T ss_pred EEcCCCceeEEEEECCCc-eEEe---ccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCC
Confidence 4 2 4789998762 2111 1111122234789999 9999998765 345777765433322211111 34
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeE--eeeeeee
Q 016032 206 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVI--GRYISEN 283 (396)
Q Consensus 206 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~ 283 (396)
...|..+.|++++..||....|. |.+|-..+..-.- .....+........+.|+|..+....... |++....
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYL-----Kqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYL-----KQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEE-----EEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 56799999999999999987664 9999887544210 01111222222224889998665433332 3333221
Q ss_pred c----c-c-----ccccceEEEEcCccch-----------hhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCC
Q 016032 284 Y----N-G-----AALHPIDFIDITTGQL-----------VAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPK 341 (396)
Q Consensus 284 ~----~-g-----~~d~~i~vwd~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~ 341 (396)
+ . + ...+.+-|-|-.+-.+ ...+.-.-...+..+ +|++++..+++-. ||.|.+|...
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v-af~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV-AFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE-EEeCCCCeEEEEECCCCEEEEEec
Confidence 1 0 1 1234455555322110 000111123567777 8999987666655 9999999854
Q ss_pred Cc
Q 016032 342 EK 343 (396)
Q Consensus 342 ~~ 343 (396)
..
T Consensus 457 ~~ 458 (928)
T PF04762_consen 457 LK 458 (928)
T ss_pred CC
Confidence 43
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=2.6e-10 Score=89.94 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=144.3
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeeccccee-ee---EecCCc------------ccceeEEEEecCC-CcEEE
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE-KI---VYGNIH------------SCIVNNIRFNPTN-DGTVY 81 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~---~~~~~~------------~~~v~~~~~~~~~-~~~l~ 81 (396)
..+.|+++.|...| .+|++|...|.|.++.-..... .. +-.++| ...|..+.|..++ ...++
T Consensus 25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 45679999999998 6999999999999998765431 11 111344 3468888887652 34566
Q ss_pred EEeCCCeEEEEECCCCcccc----------------------eeec------------CCCCCCCCCcceeeeEEEeCCC
Q 016032 82 AASSDGTVSCTDLETGLALS----------------------LMNV------------NPNGWHGPRTWRMLYGMDINPE 127 (396)
Q Consensus 82 s~~~dg~v~iwd~~~~~~~~----------------------~~~~------------~~~~~~~~~~~~~v~~~~~~~~ 127 (396)
..+.|.+|++|.+....... .+.. .+.......+..-+.++.++.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 67789999999986431100 0000 0111112233445788999988
Q ss_pred CCEEEEEecCCeEEEEeCCCCCCCccceeeecCC-----ccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC---CCc
Q 016032 128 KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-----SKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA---GSS 199 (396)
Q Consensus 128 ~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~ 199 (396)
...++++. +-.|.+|++........+.....+. .-|++..|+|...+++.-.+..|.|++-|+|.... ...
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 88777654 5789999987654443333332221 24788999998788888888999999999984321 000
Q ss_pred cccC-----------CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 200 LCDL-----------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 200 ~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
+... +....|..+.|+++|+++++-+. -+++|||.+..+
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 1000 12356888999999999987764 489999998654
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.26 E-value=1.3e-08 Score=89.22 Aligned_cols=264 Identities=19% Similarity=0.165 Sum_probs=152.3
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCC
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 114 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.++.++.+|.+..+|..+++...... ....+.+.-.. . +..++.++.++.|..||.++|+.+..+...........
T Consensus 107 ~v~v~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~p~v-~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAEDGKELWRAK--LSSEVLSPPLV-A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred EEEEEcCCCEEEEEECCCCcEeeeec--cCceeecCCEE-E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 57778889999999998888776653 22222221111 2 45677778899999999999998777654332110000
Q ss_pred cceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCC-c---cEEEEEecc-CCCCEEEEeeCCCcEEEE
Q 016032 115 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-S---KVVGLHCNP-IQPELLLSCGNDHFARIW 189 (396)
Q Consensus 115 ~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-~---~i~~~~~~~-~~~~~l~~~~~d~~i~~w 189 (396)
..+... .+..++++..+|.+..+|+++++...........+ . ....+.-.| ..+..+++++.+|.++.|
T Consensus 183 ----~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 183 ----SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred ----CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 001111 12467788888999999998876543221110000 0 000111111 024567778889999999
Q ss_pred ecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCC
Q 016032 190 DIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 269 (396)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (396)
|..+++..-.. ... ....... .+..+++++.+|.+..+|..+++.+-.... .... .
T Consensus 257 d~~tG~~~W~~---~~~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~------~~~~-----~------- 312 (377)
T TIGR03300 257 DLRSGRVLWKR---DAS-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDE------LKYR-----Q------- 312 (377)
T ss_pred ECCCCcEEEee---ccC-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccc------ccCC-----c-------
Confidence 99765432221 111 1112222 466788888999999999998875321110 0000 0
Q ss_pred CCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEE
Q 016032 270 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIW 338 (396)
Q Consensus 270 ~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw 338 (396)
.....+.+..+. .++.+|.|+++|..+|+.+.++..+.......- .+ .+++ |+.++ ||.|+.+
T Consensus 313 ~ssp~i~g~~l~---~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp-~~-~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 313 LTAPAVVGGYLV---VGDFEGYLHWLSREDGSFVARLKTDGSGIASPP-VV-VGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred cccCEEECCEEE---EEeCCCEEEEEECCCCCEEEEEEcCCCccccCC-EE-ECCE-EEEEeCCceEEEe
Confidence 011122355555 578899999999999999887765542211211 22 3445 45555 9999876
No 277
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=8.6e-10 Score=94.40 Aligned_cols=189 Identities=13% Similarity=0.209 Sum_probs=140.2
Q ss_pred cEEEEEeCCCcEEEeecccceeeeEecCC--cccceeEEEEe------cC-------------CCcEEEEEeCCCeEEEE
Q 016032 34 HILLSGDKKGQVGVWDFYKVSEKIVYGNI--HSCIVNNIRFN------PT-------------NDGTVYAASSDGTVSCT 92 (396)
Q Consensus 34 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~------~~-------------~~~~l~s~~~dg~v~iw 92 (396)
.++|....||.+++|+..+++....+.+. -.+...+..|. |. +...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 68999999999999999988766555321 22334444442 21 13467778889999999
Q ss_pred ECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC
Q 016032 93 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 172 (396)
+...++....+... .++..+.++.++.+...|.+++.|..+..|+........ ........+.+++.+|
T Consensus 86 s~~~g~it~~~st~-------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~~~~~sl~is~- 154 (541)
T KOG4547|consen 86 SVAGGEITAKLSTD-------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQKPLVSSLCISP- 154 (541)
T ss_pred EecCCeEEEEEecC-------CCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCCCccceEEEcC-
Confidence 99999988777532 223458999999999999999999999999998865443 3334444689999999
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCC-----CCEEEEE-eCCCcEEEEEccc
Q 016032 173 QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS-----GSKILTT-SQDNRLRIWDSIF 237 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~~d~~i~iwd~~~ 237 (396)
++..+++++ ++|++||+.+.+.. ....+|.++|.+++|-.+ |.+++++ ..+..+.+|-++.
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv--~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVV--ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEE--EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 899999987 58999999875442 222389999999999876 6666544 4466788887764
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=8.7e-11 Score=99.80 Aligned_cols=239 Identities=13% Similarity=0.129 Sum_probs=155.5
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCC-------cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-------LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLV 133 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 133 (396)
.+|...|..++--.+ .+.+++++.|++|++|.++.. .+..++..+. ..|..+.|-.+.+++++
T Consensus 732 ~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk---------k~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK---------KPIHDIGFLADLRSIAS 801 (1034)
T ss_pred cCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhcc---------Ccccceeeeeccceeee
Confidence 689999999887766 889999999999999998742 1222332222 33888888888777765
Q ss_pred EecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC-CCCE-EEEeeCCCcEEEEecCCCCCCCccccC---CCCCc
Q 016032 134 ADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI-QPEL-LLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRV 208 (396)
Q Consensus 134 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~ 208 (396)
.||.|++||.-.+....+......++ .+..+...+. +..+ ++.++...+|+++|.|..+-...++.. +.+..
T Consensus 802 --cD~giHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 802 --CDGGIHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred --ccCcceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 47899999998877665443333332 2333333332 3333 444477899999999876544333332 34567
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCC--CceeeEeeeeeeeccc
Q 016032 209 VNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS--ESLAVIGRYISENYNG 286 (396)
Q Consensus 209 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g 286 (396)
+.+++.-+.|+.++++-..|.|.+.|.++|+.+...+ |.... +..+...++++ ..
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr--------------------pmecdllqlaapsdq~L~---~s 935 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR--------------------PMECDLLQLAAPSDQALA---QS 935 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC--------------------cccchhhhhcCchhHHHH---hh
Confidence 8899999999999999999999999999998754222 21110 00011133444 45
Q ss_pred ccccceEE-EEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEc
Q 016032 287 AALHPIDF-IDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWR 339 (396)
Q Consensus 287 ~~d~~i~v-wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~ 339 (396)
..|.++.| |...+|....+...+. .+.. ....-|.-|+++. ...+.+|.
T Consensus 936 aldHslaVnWhaldgimh~q~kppp-epah---flqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 936 ALDHSLAVNWHALDGIMHLQDKPPP-EPAH---FLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred cccceeEeeehhcCCeeeeccCCCC-cchh---hhhccCceeEEeccCcEEEEEe
Confidence 66777888 8887777666554333 2222 1334566777777 55667774
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.21 E-value=5e-08 Score=82.13 Aligned_cols=245 Identities=11% Similarity=0.011 Sum_probs=142.2
Q ss_pred ecCCCCcEEEEEe---------CCCcEEEeecccceeeeEecCCc------ccceeEEEEecCCCcEEEEEe-C-CCeEE
Q 016032 28 FHPTNNHILLSGD---------KKGQVGVWDFYKVSEKIVYGNIH------SCIVNNIRFNPTNDGTVYAAS-S-DGTVS 90 (396)
Q Consensus 28 ~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~s~~-~-dg~v~ 90 (396)
++||+..+.++.+ .+..|.+||..+.+....+..+. ......++++|+ +++|+... . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCC-CCEEEEecCCCCCEEE
Confidence 8999966556666 68899999999988877764221 223447889999 88887665 3 78999
Q ss_pred EEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCc-ccee-eecCCccEE-EE
Q 016032 91 CTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG-EAIL-IHRKGSKVV-GL 167 (396)
Q Consensus 91 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~-~~~~-~~~~~~~i~-~~ 167 (396)
+.|+.+++.+..+..+.. ..-...+++..+ +-+.||......+....... .... ++....++. .-
T Consensus 132 VvD~~~~kvv~ei~vp~~----------~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDC----------YHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred EEECCCCcEEEEEeCCCC----------cEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 999999999988876432 111112222222 11233333332222111100 0000 111000000 00
Q ss_pred EeccCCCCEEEEeeCCCcEEEEecCCCCC--CCccccC--C------CCCceeEEEEcCCCCEEEEEe----------CC
Q 016032 168 HCNPIQPELLLSCGNDHFARIWDIRRLEA--GSSLCDL--P------HKRVVNSAYFSPSGSKILTTS----------QD 227 (396)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~--~------~~~~i~~~~~~~~~~~l~~~~----------~d 227 (396)
.+.+.++..+..... |.|.+.|+..... ...+..+ + ..+.+.-++++|+++.+++.. ..
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 334436676666665 9999999643221 1111111 1 223344599999999988753 22
Q ss_pred CcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEee-eeeeecccccccceEEEEcCccchhhhh
Q 016032 228 NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGR-YISENYNGAALHPIDFIDITTGQLVAEV 306 (396)
Q Consensus 228 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~g~~d~~i~vwd~~~~~~~~~~ 306 (396)
+.|.++|..+++.+... .-...+..+.++|+ |+ ++.. +...++.|.++|..+++.+.++
T Consensus 279 ~~V~ViD~~t~kvi~~i---------~vG~~~~~iavS~D---------gkp~lyv--tn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKI---------ELGHEIDSINVSQD---------AKPLLYA--LSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CEEEEEECCCCeEEEEE---------eCCCceeeEEECCC---------CCeEEEE--eCCCCCcEEEEECcCCeEEeee
Confidence 57999999988764311 11123347888888 55 3331 2235677999999999988887
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=1.4e-08 Score=98.78 Aligned_cols=217 Identities=12% Similarity=0.155 Sum_probs=138.0
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCc---------------ccceeEEEEecCCCcEEEEEeCC
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH---------------SCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
....+++.++++.++++-...+.|+++|+.++........+. -.....++|+|+++.++++.+.+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 357889998874444554556789999987754332211110 12346799999646777787888
Q ss_pred CeEEEEECCCCcccceeecCC-----CC-CCCCCcceeeeEEEeCCCCCEEE-EEecCCeEEEEeCCCCCCCcc------
Q 016032 87 GTVSCTDLETGLALSLMNVNP-----NG-WHGPRTWRMLYGMDINPEKGVVL-VADNFGFLYLVDARTNSRSGE------ 153 (396)
Q Consensus 87 g~v~iwd~~~~~~~~~~~~~~-----~~-~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~i~d~~~~~~~~~------ 153 (396)
+.|++||..++.... +.... .. ............++++|++..|+ +-..++.|++||+.++.....
T Consensus 705 ~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 999999998765421 11110 00 00001122367899999998554 456678999999986542100
Q ss_pred ----ceeeec--------CCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcccc-----------CCCCCcee
Q 016032 154 ----AILIHR--------KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-----------LPHKRVVN 210 (396)
Q Consensus 154 ----~~~~~~--------~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----------~~~~~~i~ 210 (396)
...... .......+++++ +++++++-+.++.|++||..+......... ...-....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 000000 001245889998 889999999999999999865432111100 01223577
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 211 SAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 211 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
.++++++|+++++-+.++.|++||+.+++.
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 899999999888888899999999998765
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=1.6e-07 Score=89.98 Aligned_cols=214 Identities=13% Similarity=0.117 Sum_probs=143.1
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeC---C---CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC--
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDK---K---GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS-- 85 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-- 85 (396)
..+. +.+.-..|+|-.|| .++|+.+. . ..++||+-+ +...... ..-.+--.+++|.|. +++|++.-.
T Consensus 204 ~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs-G~lIA~~q~~~ 278 (928)
T PF04762_consen 204 GKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS-GNLIASSQRLP 278 (928)
T ss_pred Cccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC-CCEEEEEEEcC
Confidence 3445 66677889999999 68887764 2 579999987 3333222 223344567899999 888888764
Q ss_pred -CCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccE
Q 016032 86 -DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 86 -dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
...|.+|. ++|.....|...... ....+..+.|++++..|+....+. |.+|-........+..........+
T Consensus 279 ~~~~VvFfE-rNGLrhgeF~l~~~~-----~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 279 DRHDVVFFE-RNGLRHGEFTLRFDP-----EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred CCcEEEEEe-cCCcEeeeEecCCCC-----CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC
Confidence 35677776 445555556554311 113489999999999999977555 9999887765433332223333345
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecC----CCC---------------------------CCCcc--ccCCCCCceeE
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIR----RLE---------------------------AGSSL--CDLPHKRVVNS 211 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~----~~~---------------------------~~~~~--~~~~~~~~i~~ 211 (396)
..+.|+|.+...|...+.+|.+..++.. ... .+.++ ..+....+|..
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 5699999878888888776776655432 110 01111 12235678999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 212 AYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 212 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
++|++++..+++-..||.|.+|......
T Consensus 432 vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred EEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 9999998889999999999999976543
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.14 E-value=6.4e-09 Score=83.34 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=118.6
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccc----eeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKV----SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
-..+++++++.++. +.|+.|-..|++.-+.+... ..+... ..|...|..+-|+.. ..++++.+.|..+.-.-.
T Consensus 67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCT 143 (404)
T ss_pred CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhcchhhhh-hhhhcceeeEEecCC-ceeEEEeccccceEEEee
Confidence 35678999999987 78999999999988877542 222222 569999999999887 788888888876654444
Q ss_pred CCCcccceeecC----------------------------CCCC----CCCCcceeeeEEEeCCCCCEEEEEecCCeEEE
Q 016032 95 ETGLALSLMNVN----------------------------PNGW----HGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 142 (396)
Q Consensus 95 ~~~~~~~~~~~~----------------------------~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i 142 (396)
+.+..+..+... .... .-..+...+.+++|.+....+++|..|..+.+
T Consensus 144 e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~ 223 (404)
T KOG1409|consen 144 ESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIM 223 (404)
T ss_pred ccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEE
Confidence 433322211100 0000 00112244889999999999999999999999
Q ss_pred EeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecC
Q 016032 143 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 192 (396)
Q Consensus 143 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 192 (396)
||+....-... ....+...+..+...+ .-..+.+++.||.|.+|+++
T Consensus 224 wdigg~~g~~~--el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 224 WDIGGRKGTAY--ELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EeccCCcceee--eeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence 99987554332 3344444788888777 67789999999999999986
No 283
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.14 E-value=3.9e-08 Score=83.05 Aligned_cols=258 Identities=15% Similarity=0.130 Sum_probs=161.9
Q ss_pred CCCCCCccceeeeccccCC--eE-EEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecC-CCcE
Q 016032 4 AHVIPDQVNCAVIRYHSRR--VT-CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPT-NDGT 79 (396)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~ 79 (396)
.|++..+..+..+.+-..+ .+ -+.|+-+. .++|=- ....+.|+++...-...-+...-...|....|+|. +...
T Consensus 112 vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~ 189 (561)
T COG5354 112 VWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDE 189 (561)
T ss_pred EEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCce
Confidence 4667777777777776665 55 67788776 455433 23479999973222211111112356888889987 2333
Q ss_pred EEE-----EeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe-----------cCCeEEEE
Q 016032 80 VYA-----ASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-----------NFGFLYLV 143 (396)
Q Consensus 80 l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~~g~i~i~ 143 (396)
|+. .+..+.+++|.+..+..+....+-... -..+.|.+.|+++++-. ....++++
T Consensus 190 la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~---------~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 190 LAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS---------GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred EEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec---------ccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 444 356788999999876665543322111 24577888888776531 23578888
Q ss_pred eCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEe--eCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEE
Q 016032 144 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSC--GNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKI 221 (396)
Q Consensus 144 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 221 (396)
+++....... ....++|..++|.| .++.+++. -.+..+.++|++.. +........=+.+.|+|.++++
T Consensus 261 ~~~e~~i~V~----~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~~rNT~~fsp~~r~i 330 (561)
T COG5354 261 RITERSIPVE----KDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQKRNTIFFSPHERYI 330 (561)
T ss_pred eeccccccee----ccccccceeeeecc-cCCceeEEecccccceeecccccc-----eEEecCCcccccccccCcccEE
Confidence 8885333221 13345899999999 66655544 46788999999742 2222344455678899999999
Q ss_pred EEEeCC---CcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccc---cccceEEE
Q 016032 222 LTTSQD---NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGA---ALHPIDFI 295 (396)
Q Consensus 222 ~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~---~d~~i~vw 295 (396)
+.++.| |.+-+||....... ...+.+.. ...+.|+|+ |+|+...+++- .|..|.||
T Consensus 331 l~agF~nl~gni~i~~~~~rf~~--------~~~~~~~n-~s~~~wspd---------~qF~~~~~ts~k~~~Dn~i~l~ 392 (561)
T COG5354 331 LFAGFDNLQGNIEIFDPAGRFKV--------AGAFNGLN-TSYCDWSPD---------GQFYDTDTTSEKLRVDNSIKLW 392 (561)
T ss_pred EEecCCccccceEEeccCCceEE--------EEEeecCC-ceEeeccCC---------ceEEEecCCCcccccCcceEEE
Confidence 987765 67999998654331 11111111 125789998 77777665554 58899999
Q ss_pred EcCcc
Q 016032 296 DITTG 300 (396)
Q Consensus 296 d~~~~ 300 (396)
|+...
T Consensus 393 ~v~g~ 397 (561)
T COG5354 393 DVYGA 397 (561)
T ss_pred EecCc
Confidence 98543
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.13 E-value=1.4e-07 Score=74.35 Aligned_cols=243 Identities=12% Similarity=0.090 Sum_probs=135.9
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEECCCC--cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCC
Q 016032 70 IRFNPTNDGTVYAASSDGTVSCTDLETG--LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART 147 (396)
Q Consensus 70 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~ 147 (396)
++.+.+ |+.||.. .|..|-|=..+.. ..+.....+.+.. ..-..++|+||+..||.+...|+|+++|+..
T Consensus 3 ~~~~~~-Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~------PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSD-GKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN------PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCC-CcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC------chheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 344555 5555544 4666665544432 2233333333322 1267799999999999999999999999875
Q ss_pred CCCCccce---eeecCCccEEEEEeccCC-----CCEEEEeeCCCcEEEEecCC--CCCCCccccC----CCCCceeEEE
Q 016032 148 NSRSGEAI---LIHRKGSKVVGLHCNPIQ-----PELLLSCGNDHFARIWDIRR--LEAGSSLCDL----PHKRVVNSAY 213 (396)
Q Consensus 148 ~~~~~~~~---~~~~~~~~i~~~~~~~~~-----~~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~----~~~~~i~~~~ 213 (396)
.....-.. ........|..+.|.+.. ...|++-...|.++-|-+.. .+..+....+ .....|.++.
T Consensus 75 ~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 75 SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 32211000 011122356677675522 23566667788888877632 1222222111 2467899999
Q ss_pred EcCCCCEEEEEeCCCc-----------EEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeee
Q 016032 214 FSPSGSKILTTSQDNR-----------LRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE 282 (396)
Q Consensus 214 ~~~~~~~l~~~~~d~~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 282 (396)
++|..++|++|+.... +..|.+-++.... ....+-.+ .
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyy------------------k~v~~~~~---------~---- 203 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYY------------------KQVTSSED---------D---- 203 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcE------------------EEccccCc---------c----
Confidence 9999888887764321 3334332222100 00000000 0
Q ss_pred ecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceE
Q 016032 283 NYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKI 355 (396)
Q Consensus 283 ~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~ 355 (396)
......+..+|.+.+.+... ........|..+ ..||||.+||+.. +|.|.+|++.+-.+.+..+.+.++
T Consensus 204 --~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~km-SlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 204 --ITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKM-SLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred --ccccccccceeeccceeeee-ccccCCCceEEE-EECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 00011112234333322211 123344667777 8999999999999 999999999999888777666554
No 285
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=4.7e-10 Score=98.51 Aligned_cols=183 Identities=17% Similarity=0.181 Sum_probs=127.8
Q ss_pred eEEEEecCC--CCcEEEEEeCCCcEEEeeccc--ceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 23 VTCLEFHPT--NNHILLSGDKKGQVGVWDFYK--VSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 23 v~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
|-.+.|+|. .+..+++.+ .....+|++.. ...+...+.+|...|+.+.|+|+....+++++.|-.+..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 556777664 334555544 34566898864 3445555588999999999999988999999999999999998764
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 178 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 178 (396)
........-. .....+.|+-....+++.+....|++||.+.+.......+. +-..++.++|.......+.
T Consensus 149 ~p~ys~~~w~--------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 149 RPFYSTSSWR--------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKYSEIM 218 (1081)
T ss_pred cceeeeeccc--------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhhhhhc
Confidence 3222111100 12566788887777777788889999999998766544333 4457888888876667889
Q ss_pred EeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCC
Q 016032 179 SCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPS 217 (396)
Q Consensus 179 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~ 217 (396)
+++.|++|+.||....... .-.......+|..-.+.|-
T Consensus 219 s~~~d~tvkfw~y~kSt~e-~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTE-SKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred ccCCCCceeeecccccccc-cceeccccCcceecccccc
Confidence 9999999999998643221 1112234566777777773
No 286
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=9.6e-08 Score=81.65 Aligned_cols=247 Identities=16% Similarity=0.290 Sum_probs=147.1
Q ss_pred CeEEEEecCCCCcEEEEEeC-----------CCcEEEeecccceeeeEecC--CcccceeEEEEecCCCcEEEEEeCCCe
Q 016032 22 RVTCLEFHPTNNHILLSGDK-----------KGQVGVWDFYKVSEKIVYGN--IHSCIVNNIRFNPTNDGTVYAASSDGT 88 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~ 88 (396)
.|.-+.|||.. ++|+|-+. ...++|||+.++.....+.. .....-.-..|+.+ +.++|-... .+
T Consensus 251 ~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC-CceeEEecc-ce
Confidence 58889999998 78998763 25799999999987776642 22223345689998 888887765 57
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC-----CeEEEEeC------------------
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDA------------------ 145 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~i~d~------------------ 145 (396)
|.||+..+-..+..-.+...+ |..+.|+|.++.||.-... ..+-+..+
T Consensus 328 isIyEtpsf~lld~Kslki~g---------Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDck 398 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISG---------IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCK 398 (698)
T ss_pred EEEEecCceeeecccccCCcc---------ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccE
Confidence 899987764433222222111 5666666666655543211 11222211
Q ss_pred ----------------------------------CCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC---CCcEEE
Q 016032 146 ----------------------------------RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARI 188 (396)
Q Consensus 146 ----------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~i~~ 188 (396)
+........ ......|...+|-| .|+.+++-+. ..++.+
T Consensus 399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~---velke~vi~FaWEP-~gdkF~vi~g~~~k~tvsf 474 (698)
T KOG2314|consen 399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV---VELKESVIAFAWEP-HGDKFAVISGNTVKNTVSF 474 (698)
T ss_pred EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee---eecchheeeeeecc-CCCeEEEEEccccccceeE
Confidence 111111100 11123578889999 7776665443 457899
Q ss_pred EecCC-CCCCCccccCCCCCceeEEEEcCCCCEEEEEe---CCCcEEEEEcccccccCCCcceeecccccccCCceeEEe
Q 016032 189 WDIRR-LEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS---QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEW 264 (396)
Q Consensus 189 wd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (396)
|.+.+ ......+..+. ....+.+.|+|.|++++++. ..|.+.++|+....+.. .....|.....+.|
T Consensus 475 Y~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~--------~~~~eh~~at~veW 545 (698)
T KOG2314|consen 475 YAVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD--------TASPEHFAATEVEW 545 (698)
T ss_pred EEeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh--------ccCccccccccceE
Confidence 98873 33333343332 35678899999999987764 46889999997432211 11222333346889
Q ss_pred CCCCCCCceeeEeeeeeeecc---cccccceEEEEcCccchh
Q 016032 265 DPKDPSESLAVIGRYISENYN---GAALHPIDFIDITTGQLV 303 (396)
Q Consensus 265 ~~~~~~~~~~~~g~~~~~~~~---g~~d~~i~vwd~~~~~~~ 303 (396)
+|. |+|+....+ ...|.--++|+.. |+++
T Consensus 546 DPt---------GRYvvT~ss~wrhk~d~GYri~tfq-Grll 577 (698)
T KOG2314|consen 546 DPT---------GRYVVTSSSSWRHKVDNGYRIFTFQ-GRLL 577 (698)
T ss_pred CCC---------CCEEEEeeehhhhccccceEEEEee-cHHH
Confidence 998 888884321 1234446677764 4443
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=3.3e-09 Score=86.70 Aligned_cols=164 Identities=21% Similarity=0.237 Sum_probs=109.7
Q ss_pred eeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc-cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeC
Q 016032 67 VNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 145 (396)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~ 145 (396)
+..+..++. +.+++.+..+....++++..... ........ ......++.+..+......+...|.++-+|+
T Consensus 65 ~~~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-------v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 65 PALVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-------VPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEee-------cccCcceeeeeeccceEEEEeecCCceeeee
Confidence 344455666 88888888888877777765443 11111100 0011445556666666777666666655555
Q ss_pred CCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEe
Q 016032 146 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 225 (396)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 225 (396)
-.... ........|-..++.++++| |+++|+++..|..|++-.....-....+ .++|..-|..++.-++ ..|++++
T Consensus 137 ~s~~~-~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~~-~~LlS~s 212 (390)
T KOG3914|consen 137 LSADS-GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTDN-YLLLSGS 212 (390)
T ss_pred ecccc-cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeeccC-ceeeecC
Confidence 44221 22223345555899999999 9999999999999999877543322222 2389999999999865 4589999
Q ss_pred CCCcEEEEEcccccccC
Q 016032 226 QDNRLRIWDSIFGNLDS 242 (396)
Q Consensus 226 ~d~~i~iwd~~~~~~~~ 242 (396)
.|++|++||+.+|+++.
T Consensus 213 GD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLD 229 (390)
T ss_pred CCCcEEEEecccCCccc
Confidence 99999999999999864
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=9.7e-08 Score=83.84 Aligned_cols=192 Identities=10% Similarity=0.085 Sum_probs=117.5
Q ss_pred CeEEEEecCCCCcEEEEEeC---CCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC--CeEEEEECCC
Q 016032 22 RVTCLEFHPTNNHILLSGDK---KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--GTVSCTDLET 96 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~ 96 (396)
.+..-.|+|+|+++++..+. +..|.++|+.+++...... ..+......|+|++...+++.+.+ ..|.++++.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 67889999999654553333 3568899998876655542 445566788999933444455444 4677778877
Q ss_pred CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC-C--eEEEEeCCCCCCCccceeeecCCccEEEEEeccCC
Q 016032 97 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-G--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 173 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 173 (396)
++....... ... .....|+|||+.|+..+.. + .|+++|+.++.... + ... +.. ...|+| +
T Consensus 267 g~~~~LT~~-~~~---------d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l-t~~--g~~--~~~~SP-D 329 (419)
T PRK04043 267 KTLTQITNY-PGI---------DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V-VFH--GKN--NSSVST-Y 329 (419)
T ss_pred CcEEEcccC-CCc---------cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C-ccC--CCc--CceECC-C
Confidence 764332211 110 2334699999988777643 3 68888887755421 1 111 111 248999 8
Q ss_pred CCEEEEeeCC---------CcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC-C--cEEEEEcc
Q 016032 174 PELLLSCGND---------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD-N--RLRIWDSI 236 (396)
Q Consensus 174 ~~~l~~~~~d---------~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~iwd~~ 236 (396)
+..|+..+.. ..|.+.|+.++.. ..+.. ........|+|||+.|+..+.. + .+.+.++.
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~---~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTA---NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCC---CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 8877766543 3678888866543 22221 1233458899999988766543 2 25555554
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=2.2e-08 Score=88.20 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=140.1
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceee-eEecCCcccceeEEEEecCCCcEEEEEeCCCeEEE
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK-IVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSC 91 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~i 91 (396)
-++|.||.+.|.-+.|+.+. +-|-|+..+|.|.||-+-++.-. ..+.....+.|.+++|+.+ +..++..-.||.|.+
T Consensus 64 NQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhccCcceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEE
Confidence 36789999999999999987 46899999999999998776522 2232446778999999999 899998889999887
Q ss_pred EECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCcc---c-e----eeecCCcc
Q 016032 92 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGE---A-I----LIHRKGSK 163 (396)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~---~-~----~~~~~~~~ 163 (396)
=.++..+. .--.+... ....+.|++|...++.+-.+|.+.++|.+..-.... . . .....+..
T Consensus 142 GsvdGNRI-wgKeLkg~---------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~k 211 (1189)
T KOG2041|consen 142 GSVDGNRI-WGKELKGQ---------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTK 211 (1189)
T ss_pred Eeecccee-cchhcchh---------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcc
Confidence 77664332 11111111 155778999999999999999999999875321100 0 0 01111223
Q ss_pred EEEEEecc-------CCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC
Q 016032 164 VVGLHCNP-------IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 227 (396)
Q Consensus 164 i~~~~~~~-------~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 227 (396)
|..+.|.. .+...|+.+...|.+.+..-.+......+ ...-.+....|+++|..|++++.+
T Consensus 212 ia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~---dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 212 IAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV---DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE---ecccEeecceecCCCcEEEEccCc
Confidence 55666642 15668999999999988755443332222 233568889999999999999865
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=1.4e-07 Score=73.37 Aligned_cols=270 Identities=14% Similarity=0.050 Sum_probs=156.6
Q ss_pred CCCcEEEeeccccee-eeEecCCcccceeEEEEecC----CCcEEEEEeCCCeEEEEECCCCccccee-ecCCCCCCCCC
Q 016032 41 KKGQVGVWDFYKVSE-KIVYGNIHSCIVNNIRFNPT----NDGTVYAASSDGTVSCTDLETGLALSLM-NVNPNGWHGPR 114 (396)
Q Consensus 41 ~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~ 114 (396)
....+.+|++.+... +..+. ..+.|.|. ...+|+.|+..|...+|...+.+....+ ..+......
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~-- 120 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL-- 120 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhh--
Confidence 445677888776542 22221 33455542 1568899999999999999876543322 111111000
Q ss_pred cceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCC
Q 016032 115 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 194 (396)
Q Consensus 115 ~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 194 (396)
+...+- ..--+..++.|.+++++++..+.... ..|.....+.++++++ ++.++++.+....|..|.+...
T Consensus 121 ----~~r~cd--~~~~~~i~sndht~k~~~~~~~s~~~---~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~ 190 (344)
T KOG4532|consen 121 ----VKRYCD--LKFPLNIASNDHTGKTMVVSGDSNKF---AVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDE 190 (344)
T ss_pred ----hhhhcc--cccceeeccCCcceeEEEEecCcccc---eeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCc
Confidence 111111 12235666777777777776543322 2222223488999999 9999999999999999998753
Q ss_pred CCCCc-cccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCce-eEEeCCCCCCCc
Q 016032 195 EAGSS-LCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF-RAEWDPKDPSES 272 (396)
Q Consensus 195 ~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 272 (396)
..... +........-.+..|+.....+|++..||++.|||++...... .... ..-..+...+ .+.|+|......
T Consensus 191 sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm--~~~s--strp~hnGa~R~c~Fsl~g~lDL 266 (344)
T KOG4532|consen 191 SEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM--AEIS--STRPHHNGAFRVCRFSLYGLLDL 266 (344)
T ss_pred cceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch--hhhc--ccCCCCCCceEEEEecCCCcceE
Confidence 32111 1222334455778999999999999999999999998654321 1111 1111122222 467887533222
Q ss_pred eeeEeeeeeeecccccccceEEEEcCccchhhhhc-------CCCCCCCcceeeeccCCcEEEeecCCcEEEEcCCCcc
Q 016032 273 LAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM-------DPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKS 344 (396)
Q Consensus 273 ~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~~~~~ 344 (396)
+.+ .-.-+.+.|.|+++++..+.+. .|....+... .|+.++.-+.+.+.-.+.=|++.+..
T Consensus 267 Lf~----------sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt-~f~~~n~s~~v~~e~~~ae~ni~srs 334 (344)
T KOG4532|consen 267 LFI----------SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT-NFNNENESNDVKNELQGAEYNILSRS 334 (344)
T ss_pred EEE----------ecCcceEEEEEcccCceeeEEecCccccccccccccccc-cccCCCcccccccchhhheeeccccc
Confidence 222 2345668999998887554433 2222334444 57777666666554445556655443
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.04 E-value=7.4e-10 Score=61.63 Aligned_cols=38 Identities=29% Similarity=0.608 Sum_probs=35.5
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEee
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWD 49 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 49 (396)
++++++++|.+.|++|+|+|++ .+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 4678999999999999999998 6899999999999997
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.03 E-value=4.1e-09 Score=81.21 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=100.7
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeE-ecCCcccceeEEEEecCCCcEEEEEe-----CCC
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV-YGNIHSCIVNNIRFNPTNDGTVYAAS-----SDG 87 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg 87 (396)
+.+..|+++=.+-+.+-.+ .-++++..||.+.+.+.+....... +...|.+ -.+.+.... ++.+.++. .-+
T Consensus 83 ~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~-~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH-GNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeccCCCCCcccccccC-CceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec-ccEEecCCcceEeecc
Confidence 3444555544444444334 3489999999999999876221111 1011211 112222222 44444432 123
Q ss_pred eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCC-CEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEE
Q 016032 88 TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVG 166 (396)
Q Consensus 88 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~ 166 (396)
..+.|+++.......-.. ....+.+++-+|.. +.+++|+.+|.+-+||.+....+...+..+ ..++..
T Consensus 160 ~~~a~~~~p~~t~~~~~~---------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah--k~~i~e 228 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKK---------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH--KAEIWE 228 (319)
T ss_pred ceeeeccccccccccccc---------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh--hhhhhh
Confidence 445565543322211111 11228888888864 566778899999999999876555544444 448999
Q ss_pred EEeccCCCCEEEEeeCCCcEEEEecC
Q 016032 167 LHCNPIQPELLLSCGNDHFARIWDIR 192 (396)
Q Consensus 167 ~~~~~~~~~~l~~~~~d~~i~~wd~~ 192 (396)
+.|+|.++..|+++++||.+.-||..
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCC
Confidence 99999999999999999999999976
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.03 E-value=2.1e-07 Score=73.37 Aligned_cols=195 Identities=12% Similarity=0.104 Sum_probs=113.9
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCC------cccceeEEEEecCC-----CcEEEEEeCCCeEE
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNI------HSCIVNNIRFNPTN-----DGTVYAASSDGTVS 90 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~~l~s~~~dg~v~ 90 (396)
.=.-++||||+ .+||.+...|+|+++|+...... .+... -...|..+.|.+.. ...|++-..+|.++
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 34679999999 69999999999999999864332 32222 23567777776542 23567777888888
Q ss_pred EEECCCC-----cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEE
Q 016032 91 CTDLETG-----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 91 iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
-|-+..+ +....+...... ...|.++.++|..++|++|+.... +.+. .......++
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~y------p~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------s~a~~~GLt 183 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHY------PHGINSAVYHPKHRLLLVGGCEQN------QDGM-------SKASSCGLT 183 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccC------CCceeEEEEcCCCCEEEEeccCCC------CCcc-------ccccccCce
Confidence 8876432 233334332221 123899999999998888765322 0000 000011222
Q ss_pred EEEeccCCCCEEE-EeeCCCc------EEEEecCCCCCCCcccc-CCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 166 GLHCNPIQPELLL-SCGNDHF------ARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 166 ~~~~~~~~~~~l~-~~~~d~~------i~~wd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
+-......+.+.. +...|+. ..+|.+-+ ...+.. ......|..|..||||..||+...+|.|.+|++-+
T Consensus 184 aWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~---~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 184 AWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS---FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred EEEEcCCCCcEEEccccCccccccccccceeeccc---eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 2222211112221 1111211 12333221 111111 13567899999999999999999999999999976
Q ss_pred ccc
Q 016032 238 GNL 240 (396)
Q Consensus 238 ~~~ 240 (396)
-++
T Consensus 261 L~~ 263 (282)
T PF15492_consen 261 LRL 263 (282)
T ss_pred chh
Confidence 554
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.02 E-value=5.6e-07 Score=79.37 Aligned_cols=274 Identities=15% Similarity=0.082 Sum_probs=156.7
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCccc---------ce-eEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceee
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC---------IV-NNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 104 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~v-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 104 (396)
.+++++.+|.+.-+|..+++........... .+ ..+.. . +..++.++.++.+..+|.++|+.+....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--A-GGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--E-CCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 4677778899999999988877765321110 00 01122 2 4577788889999999999999888776
Q ss_pred cCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC-CCCEEEEeeCC
Q 016032 105 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI-QPELLLSCGND 183 (396)
Q Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d 183 (396)
..... ..+... .+..+++++.+|.+..+|..+++........... .... ...+|. .+..++.++.+
T Consensus 148 ~~~~~---------~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~-~~~sP~v~~~~v~~~~~~ 214 (394)
T PRK11138 148 VAGEA---------LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS-LTLR-GESAPATAFGGAIVGGDN 214 (394)
T ss_pred CCCce---------ecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc-cccc-CCCCCEEECCEEEEEcCC
Confidence 54321 000111 2456777888999999999998766543211000 0000 001110 12356667778
Q ss_pred CcEEEEecCCCCCCCccccCCCC--C---ceeEEEEcC--CCCEEEEEeCCCcEEEEEcccccccCCCcceeeccccccc
Q 016032 184 HFARIWDIRRLEAGSSLCDLPHK--R---VVNSAYFSP--SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 256 (396)
Q Consensus 184 ~~i~~wd~~~~~~~~~~~~~~~~--~---~i~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
+.+..+|..+++..-........ . ....+.-+| .+..+++++.+|.+..+|..+|+..-... +..
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-------~~~- 286 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-------YGS- 286 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-------CCC-
Confidence 89998888765542221110000 0 011111223 34567777789999999999887532110 000
Q ss_pred CCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcE
Q 016032 257 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSI 335 (396)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i 335 (396)
.......+..+. .++.++.+..+|..+|+.+-............. .. .+.+|+.++ ||.|
T Consensus 287 -------------~~~~~~~~~~vy---~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp-~v--~~g~l~v~~~~G~l 347 (394)
T PRK11138 287 -------------VNDFAVDGGRIY---LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP-VL--YNGYLVVGDSEGYL 347 (394)
T ss_pred -------------ccCcEEECCEEE---EEcCCCeEEEEECCCCcEEEcccccCCCcccCC-EE--ECCEEEEEeCCCEE
Confidence 001122233333 356789999999999987654322111111211 12 244556666 9999
Q ss_pred EEEcCCCcceeeeccc
Q 016032 336 FIWRPKEKSELVEQKE 351 (396)
Q Consensus 336 ~iw~~~~~~~~~~~~~ 351 (396)
++.|..+|+.+...+.
T Consensus 348 ~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 348 HWINREDGRFVAQQKV 363 (394)
T ss_pred EEEECCCCCEEEEEEc
Confidence 9999999998877654
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.7e-08 Score=79.33 Aligned_cols=272 Identities=14% Similarity=0.116 Sum_probs=153.0
Q ss_pred EEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEe
Q 016032 45 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 124 (396)
Q Consensus 45 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 124 (396)
+++.+..+..... +...|...|..++|+|.+..++..++.+..|+|.|+++...+..+.... .+.+++|
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----------~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----------QIWSCCW 243 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC----------Cceeeee
Confidence 3444443333333 4467889999999999966689999999999999999988887776552 2889999
Q ss_pred CCC-CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC-----CCCEEEEeeCCCcEEEEecCCCC-CC
Q 016032 125 NPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI-----QPELLLSCGNDHFARIWDIRRLE-AG 197 (396)
Q Consensus 125 ~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~-~~ 197 (396)
.-+ .++|.+|..+|.|.+||++..+.............+|..++..+. .+.+++.... .+..|.+.-.. ..
T Consensus 244 Dlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 244 DLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECL 321 (463)
T ss_pred ccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCC
Confidence 876 567888899999999999987654333222222224444443321 3344444443 35566654221 22
Q ss_pred CccccCCCCCceeEEEEcCCCCEE-EEEeCCCc---EEE----EEcccccccCCCcceeecccccccCCceeEEeCCCCC
Q 016032 198 SSLCDLPHKRVVNSAYFSPSGSKI-LTTSQDNR---LRI----WDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDP 269 (396)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~---i~i----wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (396)
..+..++..+...++++++..+.+ ++.-.+.+ ++. -|..+|..+-..+.... .........-...+.+.+
T Consensus 322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~-Gs~~~kl~t~~ai~~~~~- 399 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF-GSKQTKLSTTQAIRAVED- 399 (463)
T ss_pred CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc-CCcccccccccceecccc-
Confidence 222333556677777777744444 43332210 110 11111111110000000 000000000112222221
Q ss_pred CCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccC-CcEEEeecCCcEEEEcCCC
Q 016032 270 SESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR-DDVLASGSSRSIFIWRPKE 342 (396)
Q Consensus 270 ~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~sg~d~~i~iw~~~~ 342 (396)
..++.. .|...+.+.+||..+++.++++... .++..+.-++-+ +.+|++=.|..++||..+.
T Consensus 400 -------nn~iv~--~gd~tn~lil~D~~s~evvQ~l~~~--epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 400 -------NNYIVV--VGDSTNELILQDPHSFEVVQTLALS--EPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred -------ccEEEE--ecCCcceeEEeccchhheeeecccC--cceeecceeecCCcchhhheecceEEEEecCC
Confidence 222221 4667789999999999999888654 455544222333 3577777788899887643
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.02 E-value=1.3e-08 Score=83.36 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=99.4
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCC
Q 016032 119 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 198 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 198 (396)
......++.+++++++..+....+++........++..........+++.+.. +......+..-|.++-+|+-+.....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccC
Confidence 34455677888999998888887888776554222222222222334444444 33333333333444444443322244
Q ss_pred ccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCce-eEEeCCCCCCCceeeEe
Q 016032 199 SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPF-RAEWDPKDPSESLAVIG 277 (396)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 277 (396)
....++|-..++.++|+||+++++++..|..|++-....-..+. ..- .+|...+ +++.- .+
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ie-------sfc-lGH~eFVS~isl~----------~~ 205 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIE-------SFC-LGHKEFVSTISLT----------DN 205 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchh-------hhc-cccHhheeeeeec----------cC
Confidence 55556899999999999999999999999999997664222111 110 0111000 11111 13
Q ss_pred eeeeeecccccccceEEEEcCccchhhhhc
Q 016032 278 RYISENYNGAALHPIDFIDITTGQLVAEVM 307 (396)
Q Consensus 278 ~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~ 307 (396)
+.+. +|+.|++|++||+.+|+.+.++.
T Consensus 206 ~~Ll---S~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 206 YLLL---SGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ceee---ecCCCCcEEEEecccCCcccccc
Confidence 4445 89999999999999999876653
No 297
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.00 E-value=1.7e-07 Score=78.79 Aligned_cols=193 Identities=12% Similarity=0.117 Sum_probs=133.0
Q ss_pred cCCCCcEEEEEeCCCcEEEeecccceeeeEecC----------CcccceeEEE-EecCCCcEEEEEeCCCeEEEEECCCC
Q 016032 29 HPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGN----------IHSCIVNNIR-FNPTNDGTVYAASSDGTVSCTDLETG 97 (396)
Q Consensus 29 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~v~~~~-~~~~~~~~l~s~~~dg~v~iwd~~~~ 97 (396)
+.||.+++++. -|.|.+||..+......-.. ..-.+..-+. |++-++++++..| -|...+.+...+
T Consensus 275 nsDGkrIvFq~--~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQN--AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEec--CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCC
Confidence 45676655554 47899999887543322110 0111222222 5555588888888 466777766555
Q ss_pred cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC-eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCE
Q 016032 98 LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 176 (396)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 176 (396)
-.+.. ... ..|.-..+..+++-++.|..|| .+-++|.++++.. .....-+.|.++..+| ++..
T Consensus 352 ~~iqv---~~~--------~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k----r~e~~lg~I~av~vs~-dGK~ 415 (668)
T COG4946 352 YSIQV---GKK--------GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK----RIEKDLGNIEAVKVSP-DGKK 415 (668)
T ss_pred eeEEc---CCC--------CceEEEEEccCCcceEEeccCCceEEEEecCCceEE----EeeCCccceEEEEEcC-CCcE
Confidence 44322 111 1266667777777899999999 8999999986532 3344445799999999 9999
Q ss_pred EEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCC----cEEEEEcccccccC
Q 016032 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN----RLRIWDSIFGNLDS 242 (396)
Q Consensus 177 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~ 242 (396)
++++.....|.+.|+.++... .+ .....+-|+...|||+++++|-+--+| .|+++|+.+++...
T Consensus 416 ~vvaNdr~el~vididngnv~-~i-dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVR-LI-DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEEEcCceEEEEEEecCCCee-Ee-cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 999999999999999875542 22 224567899999999999999887665 69999999887643
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.6e-06 Score=76.31 Aligned_cols=213 Identities=13% Similarity=0.077 Sum_probs=122.9
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcE-EEEEeC---CCeEEEEECCCCcccceeecCCCCCCCCCccee
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGT-VYAASS---DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRM 118 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (396)
..|.+-|.......... . . .......|+|+ ++. ++..+. ...|.++|+.+++......... .
T Consensus 169 ~~l~~~d~dg~~~~~~~-~-~-~~~~~p~wSpD-G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g----------~ 234 (419)
T PRK04043 169 SNIVLADYTLTYQKVIV-K-G-GLNIFPKWANK-EQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG----------M 234 (419)
T ss_pred ceEEEECCCCCceeEEc-c-C-CCeEeEEECCC-CCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC----------c
Confidence 35666666554433333 2 2 37789999999 653 554333 3569999998887655432211 1
Q ss_pred eeEEEeCCCCCEEEEEe-c--CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC-CC--cEEEEecC
Q 016032 119 LYGMDINPEKGVVLVAD-N--FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN-DH--FARIWDIR 192 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~-~--~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~--~i~~wd~~ 192 (396)
.....|+|||+.++... . +..|+++|+..+... .............|+| +++.|+..+. .+ .|++.|+.
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 45577999998777653 2 357888898775421 1122221234568999 8887666553 33 57778886
Q ss_pred CCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC---------CcEEEEEcccccccCCCcceeecccccccCCceeEE
Q 016032 193 RLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD---------NRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAE 263 (396)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (396)
.++..+.... +. ....|+|+|+.|+..+.. ..|.+.|+.++.... +... . ......
T Consensus 310 ~g~~~rlt~~-g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-----LT~~---~--~~~~p~ 374 (419)
T PRK04043 310 SGSVEQVVFH-GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-----LTAN---G--VNQFPR 374 (419)
T ss_pred CCCeEeCccC-CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-----CCCC---C--CcCCeE
Confidence 5443222211 11 124899999998776653 267888887775421 1111 1 111478
Q ss_pred eCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 264 WDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 264 ~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
|+|+ |++++..........+.+.++.
T Consensus 375 ~SPD---------G~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 375 FSSD---------GGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ECCC---------CCEEEEEEccCCcEEEEEEecC
Confidence 9998 5554432222233446666664
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1.1e-08 Score=80.96 Aligned_cols=240 Identities=14% Similarity=0.212 Sum_probs=143.8
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc-cc----ceeecCCCCC---CCCCcceeeeEEEeCCC--CCEEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL-AL----SLMNVNPNGW---HGPRTWRMLYGMDINPE--KGVVL 132 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~----~~~~~~~~~~---~~~~~~~~v~~~~~~~~--~~~l~ 132 (396)
....|+++.|... +.++++|...|.|.+|.-+... +. ..++.+...+ ........|..+.|..+ ...++
T Consensus 25 ead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 4567999999988 9999999999999999765433 11 1122221111 11122234777777654 35678
Q ss_pred EEecCCeEEEEeCCCCCC-------------------Ccc---c------------------eeeecCCccEEEEEeccC
Q 016032 133 VADNFGFLYLVDARTNSR-------------------SGE---A------------------ILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 133 ~~~~~g~i~i~d~~~~~~-------------------~~~---~------------------~~~~~~~~~i~~~~~~~~ 172 (396)
..+.+.+|++|.+..... +.. + .....|..-+.++.++.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns- 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS- 182 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence 888899999998754310 000 0 01123444578888887
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCccccC-CC-----CCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCc
Q 016032 173 QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH-----KRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSR 245 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~-----~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 245 (396)
+...++++ .|-.|.+|++.-....-.+... +| ...|++..|+| ....+...+..|.|++-|++...+...
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn-- 259 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN-- 259 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC--
Confidence 77777765 5678999988643322222111 22 24688899999 445566677789999999974332110
Q ss_pred ceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCc
Q 016032 246 EIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD 325 (396)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (396)
+ -+++...-...-..+...-...|..+ .|+++|+
T Consensus 260 --------------------~-------------------------~klfe~~~D~v~~~ff~eivsSISD~-kFs~ngr 293 (460)
T COG5170 260 --------------------S-------------------------KKLFELTIDGVDVDFFEEIVSSISDF-KFSDNGR 293 (460)
T ss_pred --------------------c-------------------------hhhhhhccCcccchhHHHHhhhhcce-EEcCCCc
Confidence 0 00110000000001111112556666 7999999
Q ss_pred EEEeecCCcEEEEcCCCcc-eeeeccccc
Q 016032 326 VLASGSSRSIFIWRPKEKS-ELVEQKEEM 353 (396)
Q Consensus 326 ~l~sg~d~~i~iw~~~~~~-~~~~~~~~~ 353 (396)
++++-+=-+++|||+...+ ++.++..|.
T Consensus 294 yIlsRdyltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 294 YILSRDYLTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred EEEEeccceEEEEecccccCCceeechHH
Confidence 9999887899999998654 566665544
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.96 E-value=2.2e-07 Score=75.97 Aligned_cols=223 Identities=19% Similarity=0.100 Sum_probs=129.4
Q ss_pred CCcEEEeecccceeeeEecCCc-ccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeee
Q 016032 42 KGQVGVWDFYKVSEKIVYGNIH-SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY 120 (396)
Q Consensus 42 dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 120 (396)
+|+|..||..+++.+.....+. .....+. ..+. +..+++++.++.|..||..+|+.+..+.......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~---------- 69 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS---------- 69 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG----------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEe-CCEEEEEcCCCEEEEEECCCCCEEEEeecccccc----------
Confidence 6889999998888887764211 1111211 2223 6778888899999999999999988887633211
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecC-CccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCc
Q 016032 121 GMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK-GSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSS 199 (396)
Q Consensus 121 ~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 199 (396)
.. ....+..+++++.++.++.+|..+++........... ........... .+..++++..++.|..+|+++++....
T Consensus 70 ~~-~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 70 GA-PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp SG-EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred ce-eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 00 1224566777778889999999998876552121111 11122222222 467788888899999999987665332
Q ss_pred cccCCCC--Cc------e-eEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCC
Q 016032 200 LCDLPHK--RV------V-NSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPS 270 (396)
Q Consensus 200 ~~~~~~~--~~------i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (396)
....... .. + ..+.+. ++ .++.++.++.+..+|+.+++..- . ..... ..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w--~-----~~~~~-------------~~ 205 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLW--S-----KPISG-------------IY 205 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEE--E-----ECSS--------------EC
T ss_pred eecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEE--E-----ecCCC-------------cc
Confidence 2221101 11 1 222222 44 77777777764444998887321 0 00000 00
Q ss_pred CceeeEeeeeeeecccccccceEEEEcCccchh
Q 016032 271 ESLAVIGRYISENYNGAALHPIDFIDITTGQLV 303 (396)
Q Consensus 271 ~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~ 303 (396)
......+..+. .++.++.|..||+.+|+.+
T Consensus 206 ~~~~~~~~~l~---~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 206 SLPSVDGGTLY---VTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ECEECCCTEEE---EEETTTEEEEEETTTTEEE
T ss_pred CCceeeCCEEE---EEeCCCEEEEEECCCCCEE
Confidence 00112244444 3457899999999999865
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=4.3e-09 Score=92.71 Aligned_cols=212 Identities=17% Similarity=0.208 Sum_probs=136.5
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
..+.||..+|+.+-|+|+.+.+|++++.|-.+..||.............-......++|+-. ...+++.+....|++||
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk-~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK-DPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc-CcchhhhccCCceEEEe
Confidence 46789999999999999998999999999999999999876554443344556788999877 44455556677899999
Q ss_pred CCCCcc-cceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 94 LETGLA-LSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 94 ~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
++.|.. +..++.+ ...++.++|..- ...+.+.+.||+|+.||-.......+. ......+|..-.+.|
T Consensus 187 ~r~gs~pl~s~K~~---------vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~--~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGH---------VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR--TVTTNFPIWRGRYLP 255 (1081)
T ss_pred ccCCCcceEEeccc---------ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce--eccccCcceeccccc
Confidence 998754 3333321 133677777553 456788899999999998764332221 122233555555555
Q ss_pred CCCCEEEEee-CCCcEEEEecCCC-------CCCCccccC-CCCCceeEEEEcCC----------CCEEEEEeCCCcEEE
Q 016032 172 IQPELLLSCG-NDHFARIWDIRRL-------EAGSSLCDL-PHKRVVNSAYFSPS----------GSKILTTSQDNRLRI 232 (396)
Q Consensus 172 ~~~~~l~~~~-~d~~i~~wd~~~~-------~~~~~~~~~-~~~~~i~~~~~~~~----------~~~l~~~~~d~~i~i 232 (396)
....+++.-. .+..+-+++-++. ...+.+..+ +|...|....|-.. .-.|++=+.|..+++
T Consensus 256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 2222222111 1123333322211 122344444 78877766655432 236999999999999
Q ss_pred EEccc
Q 016032 233 WDSIF 237 (396)
Q Consensus 233 wd~~~ 237 (396)
|-+..
T Consensus 336 WpI~~ 340 (1081)
T KOG0309|consen 336 WPIDS 340 (1081)
T ss_pred eeccH
Confidence 98764
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.1e-09 Score=83.96 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=113.5
Q ss_pred EEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCC
Q 016032 71 RFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR 150 (396)
Q Consensus 71 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~ 150 (396)
+|+-+-..+-++.+.+..|-+-++++|-..... .. ..|.++.|...+++++.|..+|.|..+|++....
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf~-sk----------sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ-SK----------SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccccc-cc----------hhHHHHHhcccCCeeEecccCCcEEEEEeeeccc
Confidence 454332223355666777888888887543322 11 2288899999999999999999999999987522
Q ss_pred C-ccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeE--EEEcCCCCEEEEEeC
Q 016032 151 S-GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNS--AYFSPSGSKILTTSQ 226 (396)
Q Consensus 151 ~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~--~~~~~~~~~l~~~~~ 226 (396)
- .......-|+..|+++.....++.+|++.+.+|.|++||.|..+.+..+... +|.+.-.- +...+....+++++.
T Consensus 287 G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 287 GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred CCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence 1 1112233456688888877657788999999999999999977665555444 45433222 233456667888999
Q ss_pred CCcEEEEEcccccccCCC
Q 016032 227 DNRLRIWDSIFGNLDSPS 244 (396)
Q Consensus 227 d~~i~iwd~~~~~~~~~~ 244 (396)
|-..+||.++.|.++...
T Consensus 367 DcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred eeEEEEEecccCceeecc
Confidence 999999999999876533
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.7e-07 Score=77.08 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=74.6
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEE
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS 90 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~ 90 (396)
.....+.+|...|..++|+|...-+|..++.+..|.|.|+++......+ ..+ ..+.+++|.-+..++|+.|...|.|.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 3345678899999999999998558889999999999999998877777 345 88999999998788999999999999
Q ss_pred EEECCCCcc
Q 016032 91 CTDLETGLA 99 (396)
Q Consensus 91 iwd~~~~~~ 99 (396)
+||++..+.
T Consensus 262 vyD~R~~~~ 270 (463)
T KOG1645|consen 262 VYDMRQPEG 270 (463)
T ss_pred EEEccCCCc
Confidence 999987653
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=7.5e-09 Score=83.05 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=111.1
Q ss_pred EEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC--CCccccCCCCCce
Q 016032 132 LVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA--GSSLCDLPHKRVV 209 (396)
Q Consensus 132 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~i 209 (396)
++.+.+-.+-+-++.++.... ....+.|.++.|.. .++++..|...|.|..+|+|.... +.+...+-|...|
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-----f~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-----FQSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV 301 (425)
T ss_pred ecccccceeEEEEeecccccc-----cccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence 555666788888888864321 12344788999987 789999999999999999987532 2334444688899
Q ss_pred eEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeeccccc
Q 016032 210 NSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAA 288 (396)
Q Consensus 210 ~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 288 (396)
+++..-. ++++|++.+.+|+|++||++.-++
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------------------------------------------------ 333 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKC------------------------------------------------ 333 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhc------------------------------------------------
Confidence 9988776 788899999999999999974332
Q ss_pred ccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccce
Q 016032 289 LHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 289 d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
++-+.++.+|-.....-..-+++....+++++ |...|||.++.|.++.+++-+..
T Consensus 334 -----------~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 334 -----------KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred -----------ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence 11123333443221111113567777777777 99999999999999988765543
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.89 E-value=2.9e-06 Score=74.87 Aligned_cols=265 Identities=14% Similarity=0.099 Sum_probs=149.3
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCcccceeE-EEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCC
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNN-IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 113 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 113 (396)
.++.++.+|.+.-+|..+++....... . ..+.+ .... +..++.+..++.|..+|..+|+.+.............
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~-~-~~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKV-A-GEALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccC-C-CceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 356677889999999999888776632 2 22222 1222 4567778889999999999999887775432110000
Q ss_pred CcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCC-c---cEEEEEecc-CCCCEEEEeeCCCcEEE
Q 016032 114 RTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG-S---KVVGLHCNP-IQPELLLSCGNDHFARI 188 (396)
Q Consensus 114 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-~---~i~~~~~~~-~~~~~l~~~~~d~~i~~ 188 (396)
....++ . .+..++.++.+|.+..+|..+++...+........ . ....+..+| ..+..++.++.+|.+..
T Consensus 197 ~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 197 GESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred CCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 000001 1 13457778888999999998877654321111000 0 011111122 02455667778899999
Q ss_pred EecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCC
Q 016032 189 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD 268 (396)
Q Consensus 189 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (396)
+|..+++..-... .. ....+.. .+..|+.++.+|.+..+|..+|+.+-.... .... .+
T Consensus 271 ld~~tG~~~W~~~-~~---~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~------~~~~------~~---- 328 (394)
T PRK11138 271 LDLRSGQIVWKRE-YG---SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD------LLHR------LL---- 328 (394)
T ss_pred EECCCCCEEEeec-CC---CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc------cCCC------cc----
Confidence 9998754321111 11 1111222 466788888899999999998875321110 0000 00
Q ss_pred CCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcC
Q 016032 269 PSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRP 340 (396)
Q Consensus 269 ~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~ 340 (396)
....+.+.++. .+..+|.|.+.|..+|+.+.+............ .+ .++ .|+.++ ||.|+.+++
T Consensus 329 --~sp~v~~g~l~---v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P-~~-~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 329 --TAPVLYNGYLV---VGDSEGYLHWINREDGRFVAQQKVDSSGFLSEP-VV-ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred --cCCEEECCEEE---EEeCCCEEEEEECCCCCEEEEEEcCCCcceeCC-EE-ECC-EEEEEeCCceEEEEeC
Confidence 01111233333 478889999999999998876654321111111 12 244 455555 999988764
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.89 E-value=1.3e-05 Score=65.85 Aligned_cols=199 Identities=15% Similarity=0.204 Sum_probs=128.8
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceee
Q 016032 25 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 104 (396)
Q Consensus 25 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 104 (396)
+..|.+....++++--..+.|..|+..+.......... ...+++... ...|+.+...+ +.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~-~g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP-DGRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECT-TSEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEcc-CCEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 57899844478888778899999999887665543221 777788733 35555555544 5556999887655554
Q ss_pred cCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC--------CeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCE
Q 016032 105 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 176 (396)
Q Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 176 (396)
.... .......+.+++.++|++.++.... |.|..++.. ++. ... ...-...+.|+|+| +++.
T Consensus 78 ~~~~----~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~---~~~~~~pNGi~~s~-dg~~ 147 (246)
T PF08450_consen 78 LPDG----GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVV---ADGLGFPNGIAFSP-DGKT 147 (246)
T ss_dssp EETT----CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEE---EEEESSEEEEEEET-TSSE
T ss_pred ccCC----CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEE---ecCcccccceEECC-cchh
Confidence 4211 1122458999999999977765543 567777777 332 111 11222578999999 8875
Q ss_pred E-EEeeCCCcEEEEecCCCCC----CCccccCCC-CCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 016032 177 L-LSCGNDHFARIWDIRRLEA----GSSLCDLPH-KRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 177 l-~~~~~d~~i~~wd~~~~~~----~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
| ++-+..+.|..+++..... ...+..+.. .+..-.+++..+|++.++.-..+.|.+++.+ |++
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~ 216 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL 216 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE
Confidence 5 4667788899999864322 112222222 2357889999999988887788999999987 664
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=7.9e-08 Score=85.79 Aligned_cols=187 Identities=12% Similarity=0.162 Sum_probs=131.0
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 99 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 99 (396)
.+.++|++++. ++|+-|..+|.|++.+..... ...+ .|... ... |.++++|+.||.|.|-.+-+.+.
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~-~~~~--~~s~~------~~~-Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP-KTNF--DHSSS------ILE-GEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCcc-cccc--ccccc------ccC-CceEEEecCCCcEEEeeccCCcc
Confidence 45678888873 579999999999999987654 2222 25443 444 99999999999999999998888
Q ss_pred cceeecCCCCCCCCCcceeeeEEEeCCC-----CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCC
Q 016032 100 LSLMNVNPNGWHGPRTWRMLYGMDINPE-----KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 174 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 174 (396)
...+.... ++.+++++|+ .+.+++|+..| +.++.-+-.... .....+...++|.++.|. +
T Consensus 106 ~~~~df~r----------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-~~v~l~~~eG~I~~i~W~---g 170 (846)
T KOG2066|consen 106 ITQYDFKR----------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-DSVVLSEGEGPIHSIKWR---G 170 (846)
T ss_pred ceeEecCC----------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-cceeeecCccceEEEEec---C
Confidence 77665543 3889999997 57899999888 766654322221 122456677799999994 6
Q ss_pred CEEEEeeCCCcEEEEecCCCCCCCccccC----CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 175 ELLLSCGNDHFARIWDIRRLEAGSSLCDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 175 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
+++|-++.+| |++||+.+.+....+... ........+.|.++.++ +.| ...+|+|..++.
T Consensus 171 ~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 171 NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIG-WGDSVKICSIKK 234 (846)
T ss_pred cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEe-cCCeEEEEEEec
Confidence 8999987665 899999765443333221 12223456788766544 434 445899998873
No 308
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.85 E-value=1.5e-09 Score=93.94 Aligned_cols=205 Identities=17% Similarity=0.224 Sum_probs=138.1
Q ss_pred cCCeEEEEecCCCC-cEEEEEeCCCcEEEeecccceee-eEecCCcccceeEEEEecCCCcEEEEEe----CCCeEEEEE
Q 016032 20 SRRVTCLEFHPTNN-HILLSGDKKGQVGVWDFYKVSEK-IVYGNIHSCIVNNIRFNPTNDGTVYAAS----SDGTVSCTD 93 (396)
Q Consensus 20 ~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~----~dg~v~iwd 93 (396)
...+.|++++-+.+ .+++.|..+|.|-+-.+...... ..+.++|..+.++++|++-..+.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34677888866554 57899999999999988765433 4444779999999999987556676663 256799999
Q ss_pred CCCCc--ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 94 LETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 94 ~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
+.++- +.....+... ......+++|..+.+.+++|.....+.++|++........ .... .+..+.+.|
T Consensus 136 i~s~ltvPke~~~fs~~------~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk--~vqG~tVdp 205 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSS------TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTK--YVQGITVDP 205 (783)
T ss_pred cccccCCCccccccccc------cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhh--hcccceecC
Confidence 99872 2222222211 1122557888888899999999999999999853322111 1111 466788888
Q ss_pred CCCCEEEEeeCCCcEEEEe-cCCCCCCCccccCCCC-----CceeEEEEcC-CCCEEEEEeC-CCcEEEEEccc
Q 016032 172 IQPELLLSCGNDHFARIWD-IRRLEAGSSLCDLPHK-----RVVNSAYFSP-SGSKILTTSQ-DNRLRIWDSIF 237 (396)
Q Consensus 172 ~~~~~l~~~~~d~~i~~wd-~~~~~~~~~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~-d~~i~iwd~~~ 237 (396)
..++++++-. ||.|.+|| .++.+. .+....+. ..+..++|.| ...++++... .++|+++|+..
T Consensus 206 ~~~nY~cs~~-dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 206 FSPNYFCSNS-DGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCCceeccc-cCceeeccchhhhcc--HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7778877765 89999999 443222 23222222 2489999999 3334555544 57899999863
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=2e-07 Score=83.01 Aligned_cols=224 Identities=14% Similarity=0.094 Sum_probs=131.9
Q ss_pred eeeeccccCCeEEEEecCCC---CcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeE
Q 016032 13 CAVIRYHSRRVTCLEFHPTN---NHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTV 89 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v 89 (396)
+.-++.|.++|..++|-|.. ..+|+.-....++.+|+..+++....... ......|+.+.|-....+..-+..|.|
T Consensus 102 ~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 102 INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-SHEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-CCcceeeeeeCCCCcceEEEEccCceE
Confidence 34467788999999996632 23555555567999999999998887743 345677788888756666666667777
Q ss_pred EEEECCCCc----ccceeecCCC--C--------------CCCCCccee---eeEEEeCCCCCEEEEEecCCeEEEEeCC
Q 016032 90 SCTDLETGL----ALSLMNVNPN--G--------------WHGPRTWRM---LYGMDINPEKGVVLVADNFGFLYLVDAR 146 (396)
Q Consensus 90 ~iwd~~~~~----~~~~~~~~~~--~--------------~~~~~~~~~---v~~~~~~~~~~~l~~~~~~g~i~i~d~~ 146 (396)
.+-+.-... ..+.+..... . ...+..... ...++|+|.-+.++.......+.++|++
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence 666543211 1111211111 0 000000011 2245789988878888888999999999
Q ss_pred CCCCCccceeeecCCccEEEEEeccC-CCCEEEEeeCCCcEEEEecCCCCCCCcc--ccC--CCCCcee-----------
Q 016032 147 TNSRSGEAILIHRKGSKVVGLHCNPI-QPELLLSCGNDHFARIWDIRRLEAGSSL--CDL--PHKRVVN----------- 210 (396)
Q Consensus 147 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~--~~~~~i~----------- 210 (396)
........ .....+ +.-+.+.|. ....|++...+|.+.+|-.+........ ..+ .....+.
T Consensus 261 ~~~~l~vv-pier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~ 337 (1062)
T KOG1912|consen 261 YECCLAVV-PIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV 337 (1062)
T ss_pred hhceeEEE-EeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc
Confidence 87665432 333333 344455551 4568999999999999976542111100 000 0111122
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEEcccccc
Q 016032 211 SAYFSPS-GSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 211 ~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
.....|. ...++.--.+|.+.+|.+.+|+.
T Consensus 338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred eeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 2223342 44444445678899999987764
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=4.4e-07 Score=74.25 Aligned_cols=231 Identities=19% Similarity=0.118 Sum_probs=129.4
Q ss_pred CCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEE
Q 016032 86 DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 86 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
+|+|..||..+|+.+......... . ...+. ..+++..+++++.++.|+.||..+++...+..........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~----~---~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-- 71 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI----G---GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-- 71 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC----S---SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--
T ss_pred CCEEEEEECCCCCEEEEEECCCCC----C---Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--
Confidence 688999999999998887653210 0 01111 2235677888899999999999998765443221111111
Q ss_pred EEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCC--CCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCC
Q 016032 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP--HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP 243 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 243 (396)
... .+..+++++.++.|+.+|..+++......... .............+..++++..++.|..+|+.+|+.+..
T Consensus 72 -~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 72 -PVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp -EEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred -eee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 111 44566666678899999988766543321111 011112222222478888888899999999999987431
Q ss_pred CcceeecccccccCCceeEEeCCCCCCCceee-Eeeeeeeecccccccc-eEEEEcCccchhhhhcCCCCCCCcceeeec
Q 016032 244 SREIVHSHDFNRHLTPFRAEWDPKDPSESLAV-IGRYISENYNGAALHP-IDFIDITTGQLVAEVMDPNITTISPVNKLH 321 (396)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~g~~d~~-i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 321 (396)
... ........+. .+... .....+ .+... ....++. +.+ |+.+++.+.+.. ...... ...
T Consensus 148 ~~~-----~~~~~~~~~~-~~~~~--~~~~~~~~~~v~----~~~~~g~~~~~-d~~tg~~~w~~~---~~~~~~--~~~ 209 (238)
T PF13360_consen 148 YPV-----GEPRGSSPIS-SFSDI--NGSPVISDGRVY----VSSGDGRVVAV-DLATGEKLWSKP---ISGIYS--LPS 209 (238)
T ss_dssp EES-----STT-SS--EE-EETTE--EEEEECCTTEEE----EECCTSSEEEE-ETTTTEEEEEEC---SS-ECE--CEE
T ss_pred eec-----CCCCCCccee-eeccc--ccceEEECCEEE----EEcCCCeEEEE-ECCCCCEEEEec---CCCccC--Cce
Confidence 111 0000000000 00000 000011 13222 2444554 555 999998654222 122232 256
Q ss_pred cCCcEEEeec-CCcEEEEcCCCcceeee
Q 016032 322 PRDDVLASGS-SRSIFIWRPKEKSELVE 348 (396)
Q Consensus 322 ~~~~~l~sg~-d~~i~iw~~~~~~~~~~ 348 (396)
+.+..|+.++ ++.|..||+.+|+.+..
T Consensus 210 ~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 210 VDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred eeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 7778888877 99999999999987643
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.83 E-value=9.7e-06 Score=66.16 Aligned_cols=245 Identities=16% Similarity=0.089 Sum_probs=144.0
Q ss_pred ceeEEEEecCCCcEEEEEeCCC-eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEE-----ecCCe
Q 016032 66 IVNNIRFNPTNDGTVYAASSDG-TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-----DNFGF 139 (396)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~~g~ 139 (396)
....++.+|.....++.+-.-| ...+||..+++....+..+...+ ..-.-.|+++|++|++. ...|.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcCCCCEEEEeccccCCCcEE
Confidence 3456788886466677776655 47899999999888775544321 12345699999999987 34589
Q ss_pred EEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC------------------CCcEEEEecCCCCCCCccc
Q 016032 140 LYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN------------------DHFARIWDIRRLEAGSSLC 201 (396)
Q Consensus 140 i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------------------d~~i~~wd~~~~~~~~~~~ 201 (396)
|-+||....- ...-.+..++-....+.+.| ++..|+++.. +.++.+.|..+++......
T Consensus 79 IgVyd~~~~~--~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 79 IGVYDAARGY--RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred EEEEECcCCc--EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 9999998321 12223444444566788899 8866666531 2234555555544433322
Q ss_pred c--CCCCCceeEEEEcCCCCEEEEEeCCCc-------EEEEEcccccccCCCccee-ecccccccCCceeEEeCCCCCCC
Q 016032 202 D--LPHKRVVNSAYFSPSGSKILTTSQDNR-------LRIWDSIFGNLDSPSREIV-HSHDFNRHLTPFRAEWDPKDPSE 271 (396)
Q Consensus 202 ~--~~~~~~i~~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (396)
. --|...|..+++.++|..++..-..|. |-+++.. +......... ....+.+... +++++++
T Consensus 156 Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~g--SIa~~~~---- 227 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIG--SIAADRD---- 227 (305)
T ss_pred cCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceE--EEEEeCC----
Confidence 2 136678999999999877665544332 2233222 2111110000 0011112211 4555555
Q ss_pred ceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeecCCcEEEEcC
Q 016032 272 SLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRP 340 (396)
Q Consensus 272 ~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~ 340 (396)
|.+++. +.-..+.+.+||..+++.+....-. .++.+ +-.+++ +++|.+.|.+.....
T Consensus 228 -----g~~ia~--tsPrGg~~~~~d~~tg~~~~~~~l~---D~cGv-a~~~~~-f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 228 -----GRLIAV--TSPRGGRVAVWDAATGRLLGSVPLP---DACGV-APTDDG-FLVSSGQGQLIRLSP 284 (305)
T ss_pred -----CCEEEE--ECCCCCEEEEEECCCCCEeeccccC---ceeee-eecCCc-eEEeCCCccEEEccC
Confidence 444442 5667788999999999988765443 34555 455555 777766666544443
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.78 E-value=4.5e-06 Score=68.53 Aligned_cols=222 Identities=18% Similarity=0.149 Sum_probs=129.7
Q ss_pred EEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeC-CCCCEEEEEecCCeEEEEeCCC
Q 016032 69 NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN-PEKGVVLVADNFGFLYLVDART 147 (396)
Q Consensus 69 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~g~i~i~d~~~ 147 (396)
++.|.+..+.++++--..+.|..|+..++.... +..+. ...+++. ++ ..++++... .+.++|+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-----------~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~ 69 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-----------PNGMAFDRPD-GRLYVADSG-GIAVVDPDT 69 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-----------EEEEEEECTT-SEEEEEETT-CEEEEETTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-----------CceEEEEccC-CEEEEEEcC-ceEEEecCC
Confidence 578888537777777778999999998875533 22211 5667777 55 555555554 445558887
Q ss_pred CCCCccceeee--c-CCccEEEEEeccCCCCEEEEeeCC--------CcEEEEecCCCCCCCccccCCCCCceeEEEEcC
Q 016032 148 NSRSGEAILIH--R-KGSKVVGLHCNPIQPELLLSCGND--------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 216 (396)
Q Consensus 148 ~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (396)
++... ..... . .....+.+++.| ++++.++.... |.|..++.. .+.... ...-...+.|+|+|
T Consensus 70 g~~~~-~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~---~~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 70 GKVTV-LADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV---ADGLGFPNGIAFSP 143 (246)
T ss_dssp TEEEE-EEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE---EEEESSEEEEEEET
T ss_pred CcEEE-EeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEE---ecCcccccceEECC
Confidence 64322 21221 1 345788999999 89877776543 457777765 222111 12345578999999
Q ss_pred CCCEEE-EEeCCCcEEEEEcccccc-cCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEE
Q 016032 217 SGSKIL-TTSQDNRLRIWDSIFGNL-DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDF 294 (396)
Q Consensus 217 ~~~~l~-~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~v 294 (396)
+++.|+ +-+..+.|..|++..... +...+.+....... ..+-.++.+.+ |++.. +....+.|.+
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--g~pDG~~vD~~---------G~l~v---a~~~~~~I~~ 209 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP--GYPDGLAVDSD---------GNLWV---ADWGGGRIVV 209 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS--CEEEEEEEBTT---------S-EEE---EEETTTEEEE
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCCCC--cCCCcceEcCC---------CCEEE---EEcCCCEEEE
Confidence 999776 556678899999864332 11111111111110 11224555554 66555 3345678999
Q ss_pred EEcCccchhhhhcCCCCCCCcceeee-ccCCcEE
Q 016032 295 IDITTGQLVAEVMDPNITTISPVNKL-HPRDDVL 327 (396)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l 327 (396)
++.. |+.+..+..+. ...+++ +| -++...|
T Consensus 210 ~~p~-G~~~~~i~~p~-~~~t~~-~fgg~~~~~L 240 (246)
T PF08450_consen 210 FDPD-GKLLREIELPV-PRPTNC-AFGGPDGKTL 240 (246)
T ss_dssp EETT-SCEEEEEE-SS-SSEEEE-EEESTTSSEE
T ss_pred ECCC-ccEEEEEcCCC-CCEEEE-EEECCCCCEE
Confidence 9987 88888777663 456666 67 3554433
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=3.4e-07 Score=81.90 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=128.9
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 142 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i 142 (396)
....+.|++++ ..+|+-|+.+|.|++++....- ...+. +. .-..+|.++++++.||.|.+
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~-~s---------------~~~~~Gey~asCS~DGkv~I 97 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFD-HS---------------SSILEGEYVASCSDDGKVVI 97 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccc-cc---------------ccccCCceEEEecCCCcEEE
Confidence 34567778877 6799999999999999876432 21111 10 01557999999999999999
Q ss_pred EeCCCCCCCccceeeecCCccEEEEEeccC----CCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCC
Q 016032 143 VDARTNSRSGEAILIHRKGSKVVGLHCNPI----QPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSG 218 (396)
Q Consensus 143 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 218 (396)
..+-+...... ..-.-++.+++++|. ....+++|+..| +.++.-+-......+......++|.++.| .|
T Consensus 98 ~sl~~~~~~~~----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g 170 (846)
T KOG2066|consen 98 GSLFTDDEITQ----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RG 170 (846)
T ss_pred eeccCCcccee----EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cC
Confidence 98887654422 223337999999992 256899999988 88876543333333322356789999999 68
Q ss_pred CEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcC
Q 016032 219 SKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDIT 298 (396)
Q Consensus 219 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~ 298 (396)
.++|-++.+| |++||+.+++.+....... ........+..+.|.+. .+++. +...+|+|..++
T Consensus 171 ~lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~~R~e~fpphl~W~~~---------~~LVI-----GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 171 NLIAWANDDG-VKVYDTPTRQRLTNIPPPS--QSVRPELFPPHLHWQDE---------DRLVI-----GWGDSVKICSIK 233 (846)
T ss_pred cEEEEecCCC-cEEEeccccceeeccCCCC--CCCCcccCCCceEecCC---------CeEEE-----ecCCeEEEEEEe
Confidence 8999988665 9999999887654322211 22222333446788876 34443 344458888776
No 314
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.76 E-value=2.6e-06 Score=70.21 Aligned_cols=286 Identities=11% Similarity=0.031 Sum_probs=158.5
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe----------CCCeEEEEECCCCcccceeecCCC-CCC
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS----------SDGTVSCTDLETGLALSLMNVNPN-GWH 111 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~-~~~ 111 (396)
+.+.|+|..+++.+-.+..+. .-.+..+|+ ++.+++++ ..-.|.+||..+-.....+..+.. ...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCC-CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence 479999998888776664333 344667898 77777643 244699999999998888888765 221
Q ss_pred CCCcceeeeEEEeCCCCCEEEEEe--cCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEE
Q 016032 112 GPRTWRMLYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 189 (396)
Q Consensus 112 ~~~~~~~v~~~~~~~~~~~l~~~~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~w 189 (396)
.. .....++++.+++++++.. -...|.+.|+...+...++ ... .+.. ..|..+.-|.+-+.||.+...
T Consensus 93 ~~---~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei---~~P--GC~~--iyP~~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 93 VV---PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI---DTP--GCWL--IYPSGNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp BS-----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE---EGT--SEEE--EEEEETTEEEEEETTSCEEEE
T ss_pred ec---ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee---cCC--CEEE--EEecCCCceEEEecCCceEEE
Confidence 11 1245568899999888864 4468999999987655322 111 1222 223234567788889999988
Q ss_pred ecCCCCCCCccc--cC--CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccccc---ccC--Cce
Q 016032 190 DIRRLEAGSSLC--DL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFN---RHL--TPF 260 (396)
Q Consensus 190 d~~~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~--~~~ 260 (396)
.+.......... .+ .....+..-++...+..++--+.+|.|+--|+...... ....+.....-. ++. .--
T Consensus 163 ~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~~~~~~~~t~~e~~~~WrPGG~Q 241 (342)
T PF06433_consen 163 TLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-FGKPWSLLTDAEKADGWRPGGWQ 241 (342)
T ss_dssp EETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-EEEEEESS-HHHHHTTEEE-SSS
T ss_pred EECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc-ccCcccccCccccccCcCCccee
Confidence 887432211110 11 12222334455555556666788999988888654421 000000000000 000 000
Q ss_pred eEEeCCCCCCCceeeEeeeeeeecccc-c--ccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCc-EEEee-c-CCc
Q 016032 261 RAEWDPKDPSESLAVIGRYISENYNGA-A--LHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDD-VLASG-S-SRS 334 (396)
Q Consensus 261 ~~~~~~~~~~~~~~~~g~~~~~~~~g~-~--d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~sg-~-d~~ 334 (396)
.+++++......+.... ..-|+ . ...|.++|+.+++.+.++...+ .+.++ +.+.+.+ +|++. . ++.
T Consensus 242 ~~A~~~~~~rlyvLMh~-----g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si-~Vsqd~~P~L~~~~~~~~~ 313 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMHQ-----GGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSI-AVSQDDKPLLYALSAGDGT 313 (342)
T ss_dssp -EEEETTTTEEEEEEEE-------TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEE-EEESSSS-EEEEEETTTTE
T ss_pred eeeeccccCeEEEEecC-----CCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceE-EEccCCCcEEEEEcCCCCe
Confidence 13344332111111100 00111 1 1348888999999999887542 34455 6777664 66543 3 799
Q ss_pred EEEEcCCCcceeeeccc
Q 016032 335 IFIWRPKEKSELVEQKE 351 (396)
Q Consensus 335 i~iw~~~~~~~~~~~~~ 351 (396)
|.+||..+|+.+..+++
T Consensus 314 l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 314 LDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEETTT--EEEEE--
T ss_pred EEEEeCcCCcEEeehhc
Confidence 99999999999988765
No 315
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=4.6e-06 Score=73.92 Aligned_cols=156 Identities=19% Similarity=0.139 Sum_probs=107.6
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
|...|.--+++..+ .+++.|+.-|.+++|+-..+........+-...+..+..+++ ..++|.|+..|.|.++.+..+.
T Consensus 32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccC
Confidence 44455555556566 689999999999999998877665554444455666777887 8888999999999999988755
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCC-CCCccceeeecCCccEEEEEeccCCCCEE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTN-SRSGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
........+.. ..+...|++++|++++..+++|...|.|..-.+.+. .............+.|..+... ++.+|
T Consensus 110 p~~~~~~t~~d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LL 184 (726)
T KOG3621|consen 110 PRDLDYVTPCD---KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLL 184 (726)
T ss_pred CCcceeecccc---ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceeh
Confidence 44433332221 113456999999999999999999999999888772 2112222334445578888776 34444
Q ss_pred EEee
Q 016032 178 LSCG 181 (396)
Q Consensus 178 ~~~~ 181 (396)
++..
T Consensus 185 VStl 188 (726)
T KOG3621|consen 185 VSTL 188 (726)
T ss_pred Hhhh
Confidence 4443
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.75 E-value=1.9e-05 Score=64.42 Aligned_cols=206 Identities=16% Similarity=0.125 Sum_probs=131.4
Q ss_pred eEEEEecCCCCcEEEEEeCCCc-EEEeecccceeeeEecCCcccc--eeEEEEecCCCcEEEEEeC-----CCeEEEEEC
Q 016032 23 VTCLEFHPTNNHILLSGDKKGQ-VGVWDFYKVSEKIVYGNIHSCI--VNNIRFNPTNDGTVYAASS-----DGTVSCTDL 94 (396)
Q Consensus 23 v~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~-----dg~v~iwd~ 94 (396)
...++.+|.....++.+-.-|+ ..+||..++.....+.. ..+. --.-.|+++ +.+|++.-. .|.|-|||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~d-G~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPD-GRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCC-CCEEEEeccccCCCcEEEEEEEC
Confidence 3457888866567777777665 67899998887766532 1111 113579999 888888643 588999999
Q ss_pred C-CCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec------------------CCeEEEEeCCCCCCCccce
Q 016032 95 E-TGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN------------------FGFLYLVDARTNSRSGEAI 155 (396)
Q Consensus 95 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------~g~i~i~d~~~~~~~~~~~ 155 (396)
. +.+.+..+....-. ...+.+.|++..|+++.. +-.+...|..++..+.+..
T Consensus 85 ~~~~~ri~E~~s~GIG---------PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIG---------PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred cCCcEEEeEecCCCcC---------hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 8 44555555433222 556779999988888732 1244455666665544321
Q ss_pred e-eecCCccEEEEEeccCCCCEEEEeeCCCc-------EEEEecCCCCCCCcccc-----CCCCCceeEEEEcCCCCEEE
Q 016032 156 L-IHRKGSKVVGLHCNPIQPELLLSCGNDHF-------ARIWDIRRLEAGSSLCD-----LPHKRVVNSAYFSPSGSKIL 222 (396)
Q Consensus 156 ~-~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-------i~~wd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~ 222 (396)
. ...+...|..+++.+ ++..++..-..|. |-+++... ....+.. ..-.+.+-+|++++++.+++
T Consensus 156 Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred cCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 1 122444799999998 7776666554432 44444322 1111111 12356799999999998886
Q ss_pred EEe-CCCcEEEEEcccccccC
Q 016032 223 TTS-QDNRLRIWDSIFGNLDS 242 (396)
Q Consensus 223 ~~~-~d~~i~iwd~~~~~~~~ 242 (396)
+.+ ..+.+.+||..+++++.
T Consensus 233 ~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred EECCCCCEEEEEECCCCCEee
Confidence 655 57789999999998754
No 317
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.6e-07 Score=78.24 Aligned_cols=233 Identities=8% Similarity=0.019 Sum_probs=147.9
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-CCeEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFLY 141 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~ 141 (396)
|...|+.+.-.. .+++++++.||.++.|--..-..+..+. + -..+...+.+++.+-++..+.+.+. |..++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVK-h-----FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~K 79 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVK-H-----FRAHLGVILSLAVSYDGWLFRSVEDPDHSVK 79 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehh-h-----hHHHHHHHHhhhccccceeEeeccCccccee
Confidence 777788776554 6899999999999999754312222111 1 1122234778888889999999776 99999
Q ss_pred EEeCCCCCCCccceeeecCCccEEEEEeccCCC--CEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCC
Q 016032 142 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP--ELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 219 (396)
Q Consensus 142 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (396)
++|+..-....-+ ....-...+ +...++.+. .+.++.-.++.+.++|-+...+......--|..+|..+.+++-+.
T Consensus 80 vfDvEn~Dminmi-KL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 80 VFDVENFDMINMI-KLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred EEEeeccchhhhc-ccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9999875443211 111111112 222232111 222333467899999987544333333335899999999999999
Q ss_pred EEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc
Q 016032 220 KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 299 (396)
Q Consensus 220 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~ 299 (396)
.+++....|.|.-|.... ....|.. .+.|. +..
T Consensus 158 s~vSiD~~gmVEyWs~e~-~~qfPr~---------------~l~~~-------------------------------~K~ 190 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEG-PFQFPRT---------------NLNFE-------------------------------LKH 190 (558)
T ss_pred ceeeccccceeEeecCCC-cccCccc---------------ccccc-------------------------------ccc
Confidence 999999999999998763 1111110 12222 222
Q ss_pred cchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccce
Q 016032 300 GQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
..-+..+.-.. ....++ .|+|+|..+.+-+ |..|+++...+|+.++.+.+...
T Consensus 191 eTdLy~f~K~K-t~pts~-Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 191 ETDLYGFPKAK-TEPTSF-EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cchhhcccccc-cCccce-EEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 22222222222 344455 7999999999977 99999999999998888766443
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=3.2e-08 Score=89.24 Aligned_cols=201 Identities=11% Similarity=0.102 Sum_probs=137.0
Q ss_pred eeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCC--cEEEEecCCC
Q 016032 117 RMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH--FARIWDIRRL 194 (396)
Q Consensus 117 ~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~ 194 (396)
...+|++|+.+.++|++|+..|.|+++++.++..... ...|+..++.+.-+. ++..+++.+.-. -..+|++.+
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~~s- 1176 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---VNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDASS- 1176 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccccc---ccccccccccccccC-CcceeeeeccccCchHHHhcccc-
Confidence 3488999999999999999999999999999876543 345666899988888 777666654422 577999854
Q ss_pred CCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCcee
Q 016032 195 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA 274 (396)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (396)
.......+ ..-.++.|+.....-+.|+......+||+.++..+...-.......+.+ -...|+|.
T Consensus 1177 -~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~----n~a~FsP~------- 1241 (1516)
T KOG1832|consen 1177 -TGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN----NLAHFSPC------- 1241 (1516)
T ss_pred -ccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc----cccccCCC-------
Confidence 22222222 2346788887655556666667899999999876543221111111111 25678887
Q ss_pred eEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeecCCcEEEEcCCCcceeeeccccce
Q 016032 275 VIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 275 ~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
..++. .|| .+||.+..+.+..|..-. ..+.. .|||.|.-++.-+. |||+.+-+.+..+..-.+
T Consensus 1242 --D~LIl------ndG--vLWDvR~~~aIh~FD~ft-~~~~G--~FHP~g~eVIINSE----IwD~RTF~lLh~VP~Ldq 1304 (1516)
T KOG1832|consen 1242 --DTLIL------NDG--VLWDVRIPEAIHRFDQFT-DYGGG--GFHPSGNEVIINSE----IWDMRTFKLLHSVPSLDQ 1304 (1516)
T ss_pred --cceEe------eCc--eeeeeccHHHHhhhhhhe-ecccc--cccCCCceEEeech----hhhhHHHHHHhcCccccc
Confidence 33333 122 389999888888776544 33333 49999998888664 899999998888766554
No 319
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.71 E-value=5.4e-05 Score=59.20 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=98.2
Q ss_pred EecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecC
Q 016032 27 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVN 106 (396)
Q Consensus 27 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 106 (396)
...++...+++.|+..+.+.--|..++....... -...|.+-+.- - +++++.|+..|.+.+.+..+|.....+...
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-v-gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-V-GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-E-CCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 3445555789999999999999999988777654 44455544443 2 788999999999999999999777666543
Q ss_pred CCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcE
Q 016032 107 PNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFA 186 (396)
Q Consensus 107 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i 186 (396)
..- -......+++..+..|+.|++.+..|.++.....+. .-.+....+-+..|.+ ..|..+...|.+
T Consensus 93 ~~v---------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks---kcgG~~f~sP~i~~g~-~sly~a~t~G~v 159 (354)
T KOG4649|consen 93 ETV---------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS---KCGGGTFVSPVIAPGD-GSLYAAITAGAV 159 (354)
T ss_pred hhh---------ccceEEcCCCceEEEecCCCcEEEecccccceEEec---ccCCceeccceecCCC-ceEEEEeccceE
Confidence 221 122345778999999999999999999987655432 2222223344455523 334444444555
Q ss_pred EEEec
Q 016032 187 RIWDI 191 (396)
Q Consensus 187 ~~wd~ 191 (396)
.--..
T Consensus 160 lavt~ 164 (354)
T KOG4649|consen 160 LAVTK 164 (354)
T ss_pred EEEcc
Confidence 44333
No 320
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.69 E-value=1.3e-05 Score=72.43 Aligned_cols=296 Identities=16% Similarity=0.116 Sum_probs=159.1
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCcc-----ccee--EEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCC
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHS-----CIVN--NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNP 107 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~v~--~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 107 (396)
.++.++.++.+.-.|..+++.+........ ..+. .+... + +..++.++.++.|..+|.++|+.+..+....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~-~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-D-PRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-c-CCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 366677789999999999887776532211 0010 11111 1 2688888899999999999999988776543
Q ss_pred CCCCCCCcceeeeEEEeCCCCCEEEEEe---------cCCeEEEEeCCCCCCCccceeeecC-----------------C
Q 016032 108 NGWHGPRTWRMLYGMDINPEKGVVLVAD---------NFGFLYLVDARTNSRSGEAILIHRK-----------------G 161 (396)
Q Consensus 108 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~g~i~i~d~~~~~~~~~~~~~~~~-----------------~ 161 (396)
...... ....+..+. +..++.++ .+|.+..+|..+++........... +
T Consensus 141 ~~~~~~---~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 141 QVPPGY---TMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CcCcce---EecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 310000 000011111 24455543 3578899999888765543221110 0
Q ss_pred ccE-EEEEeccCCCCEEEEeeCCC------------------cEEEEecCCCCCCCccccCCCCC----ceeEEEEc---
Q 016032 162 SKV-VGLHCNPIQPELLLSCGNDH------------------FARIWDIRRLEAGSSLCDLPHKR----VVNSAYFS--- 215 (396)
Q Consensus 162 ~~i-~~~~~~~~~~~~l~~~~~d~------------------~i~~wd~~~~~~~~~~~~~~~~~----~i~~~~~~--- 215 (396)
..+ ...++.+ .+..++.++.++ .|.-+|..+++..-..+...+.. ......+.
T Consensus 216 ~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~ 294 (488)
T cd00216 216 GTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK 294 (488)
T ss_pred CCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc
Confidence 001 1233444 456677776554 68888887766533332211110 00001111
Q ss_pred -CCCC---EEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeee--------e
Q 016032 216 -PSGS---KILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE--------N 283 (396)
Q Consensus 216 -~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--------~ 283 (396)
-++. .+++++.+|.+...|.++|+.+-....... ....+|+ .+-+....+.. .
T Consensus 295 ~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-----------~~~~~~~----~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 295 PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-----------PMAYDPG----LVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc-----------ccccCCc----eEEEccccccccCcccccCC
Confidence 1333 577888899999999999987542211100 0111110 00000000000 0
Q ss_pred cccccccceEEEEcCccchhhhhcCCCC-------CCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccce
Q 016032 284 YNGAALHPIDFIDITTGQLVAEVMDPNI-------TTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 284 ~~g~~d~~i~vwd~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
+....+|.+.-.|+.+|+.+-+...... .....- .....+.+|+.++ ||.|+.+|..+|+.+.+.+....
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~-~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~ 437 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGG-SLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSG 437 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCc-ceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCC
Confidence 0123467788888888887766543310 011100 1223556788887 99999999999999988776444
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.68 E-value=1.1e-07 Score=52.74 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=33.1
Q ss_pred eeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 55 EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 55 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
+...+ .+|...|.+|+|+|+ +.+|++++.|+.|++||
T Consensus 3 ~~~~~-~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 34444 789999999999999 99999999999999997
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=2.1e-05 Score=74.17 Aligned_cols=210 Identities=9% Similarity=0.084 Sum_probs=132.3
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 99 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 99 (396)
.+.|.++.|..+.. -++.+..+|.|.+-|..+......- .-...|.+++|+|+ ...++..+..+++.+-.- +-.+
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~D-ee~l~liT~~~tll~mT~-~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPD-EELLALITGRQTLLFMTK-DFEP 142 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCC-CcEEEEEeCCcEEEEEec-cccc
Confidence 35899999999885 4667778899999988876544433 26678999999999 889888888787766543 1111
Q ss_pred cceeecC-----------------CCCCCCC-------------------CcceeeeEEEeCCCCCEEEEE-----ecCC
Q 016032 100 LSLMNVN-----------------PNGWHGP-------------------RTWRMLYGMDINPEKGVVLVA-----DNFG 138 (396)
Q Consensus 100 ~~~~~~~-----------------~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~~~-----~~~g 138 (396)
+.....+ ...+.+. .....=.++.|-.||.++++. ....
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 1110000 0000000 000112358899999999984 3336
Q ss_pred eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee---CCCcEEEEecCCCCCCCccccC-CCCCceeEEEE
Q 016032 139 FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYF 214 (396)
Q Consensus 139 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~ 214 (396)
.|++||-+ +.... ......+.-.+++|-| .|.++++-. .|+.|.+|.-+-...+...... .....+..++|
T Consensus 223 kirV~drE-g~Lns---~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNS---TSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred eEEEeccc-chhhc---ccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 89999987 22111 1111122345899999 888888754 3567989876543333222112 23344999999
Q ss_pred cCCCCEEEE---EeCCCcEEEEEccccc
Q 016032 215 SPSGSKILT---TSQDNRLRIWDSIFGN 239 (396)
Q Consensus 215 ~~~~~~l~~---~~~d~~i~iwd~~~~~ 239 (396)
+.++..||+ ......|++|-+.+..
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecCeE
Confidence 999999987 4444559999876543
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=4.7e-06 Score=72.63 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=78.8
Q ss_pred eeEEEeCCC-CCEEEEE----ecCC----eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEE
Q 016032 119 LYGMDINPE-KGVVLVA----DNFG----FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIW 189 (396)
Q Consensus 119 v~~~~~~~~-~~~l~~~----~~~g----~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~w 189 (396)
..++.|+-. ...+.+. +.+| .-.+|++...+........-.....+.+.+++| +...++.|+.||+|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence 345566653 3334332 2333 334566655433222223334455799999999 99999999999999999
Q ss_pred ecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 016032 190 DIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 190 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 238 (396)
|....... . ....-.++.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 287 D~~~~~t~--~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTL--L--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeee--e--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 98653221 1 134456789999999999999999999999999744
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.63 E-value=9.1e-07 Score=80.39 Aligned_cols=152 Identities=19% Similarity=0.259 Sum_probs=116.7
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC---------CCeEEEE
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---------DGTVSCT 92 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------dg~v~iw 92 (396)
.|.=+..+ + ++|++|...|+|.+-|..+.+.+..+ ..|.+.|..+... ++.|++|+. |..|+||
T Consensus 179 ~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 179 GVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ceEEEEec--C-cEEEeecccceEEeecCCcCceeeee-eccccceeeeecc---CCeEEEeecccccccccccchhhhh
Confidence 34444443 3 78999999999999999998888888 7899999988876 789999875 5668999
Q ss_pred ECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC-CCEEEEEecCCeEEEEeCCCCCCC-ccceeeecCCccEEEEEec
Q 016032 93 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE-KGVVLVADNFGFLYLVDARTNSRS-GEAILIHRKGSKVVGLHCN 170 (396)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~i~~~~~~ 170 (396)
|++..+.+.-+..+.. ..-+.|.|. ...+++++..|...+.|..+.... ......+..+..+..+.++
T Consensus 252 DLRmmral~PI~~~~~----------P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 252 DLRMMRALSPIQFPYG----------PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hhhhhhccCCcccccC----------chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEec
Confidence 9998887766655433 233556775 467888899999999995443222 3333445555569999999
Q ss_pred cCCCCEEEEeeCCCcEEEEec
Q 016032 171 PIQPELLLSCGNDHFARIWDI 191 (396)
Q Consensus 171 ~~~~~~l~~~~~d~~i~~wd~ 191 (396)
+ +++.++.|..+|.|.+|--
T Consensus 322 s-n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 322 S-NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred C-CCceEEEecccCcEeeecC
Confidence 9 9999999999999999974
No 325
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.61 E-value=0.00018 Score=60.93 Aligned_cols=198 Identities=17% Similarity=0.196 Sum_probs=97.7
Q ss_pred EecCCCCcEEEEEeCCCc--EEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceee
Q 016032 27 EFHPTNNHILLSGDKKGQ--VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 104 (396)
Q Consensus 27 ~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 104 (396)
+|.++|.++|+.+..||. +.+.|+.+++..+... +.........++|+ .+.++-......|+-.|+++.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-g~g~~~~g~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-GPGDNTFGGFLSPD-DRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT-SSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-CCCCCccceEEecC-CCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 568889888888877765 5556777776665553 22233345667788 6776655556789999999987766665
Q ss_pred cCCCCCCCCCcceeeeEEEe--CCCCCEEEEEec----------------------CCeEEEEeCCCCCCCccceeeecC
Q 016032 105 VNPNGWHGPRTWRMLYGMDI--NPEKGVVLVADN----------------------FGFLYLVDARTNSRSGEAILIHRK 160 (396)
Q Consensus 105 ~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~----------------------~g~i~i~d~~~~~~~~~~~~~~~~ 160 (396)
.+..- +-...| +.++..++-.-. ...|...|+.+++. ...+..
T Consensus 120 ~p~~~---------~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~ 186 (386)
T PF14583_consen 120 VPDDW---------KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFED 186 (386)
T ss_dssp --TTE---------EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEE
T ss_pred CCccc---------ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEec
Confidence 54331 222333 445555433211 12445556666432 233444
Q ss_pred CccEEEEEeccCCCCEEEEeeC---CC-cEEEEecCCCCC-CCccccCCCCCceeEEEEcCCCCEEEEEeC-----CCcE
Q 016032 161 GSKVVGLHCNPIQPELLLSCGN---DH-FARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-----DNRL 230 (396)
Q Consensus 161 ~~~i~~~~~~~~~~~~l~~~~~---d~-~i~~wd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i 230 (396)
...+..+.++|.++.+|+-|-+ +. .-|+|-+++... ...+........+..=-|.|+|..|.--+. +..|
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i 266 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI 266 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence 4578899999988888888764 22 135665553221 222222122334555578999987754322 3356
Q ss_pred EEEEccccc
Q 016032 231 RIWDSIFGN 239 (396)
Q Consensus 231 ~iwd~~~~~ 239 (396)
.-+|+.+++
T Consensus 267 ~~~d~~t~~ 275 (386)
T PF14583_consen 267 AGYDPDTGE 275 (386)
T ss_dssp EEE-TTT--
T ss_pred EeeCCCCCC
Confidence 667777654
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.60 E-value=2.1e-06 Score=78.15 Aligned_cols=183 Identities=13% Similarity=0.174 Sum_probs=131.8
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCC
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 114 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 114 (396)
.++.|+....+..+|+.+.+...... -....|.-++.+ +..+.+|...|+|.+-|.++.+.++.+..+...
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s----- 219 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS----- 219 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeee-ccCCceEEEEec---CcEEEeecccceEEeecCCcCceeeeeeccccc-----
Confidence 46666666678888888876665552 223336666654 789999999999999999999999999877654
Q ss_pred cceeeeEEEeCCCCCEEEEEecC---------CeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCc
Q 016032 115 TWRMLYGMDINPEKGVVLVADNF---------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF 185 (396)
Q Consensus 115 ~~~~v~~~~~~~~~~~l~~~~~~---------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 185 (396)
+. +|+-.|+.|++++.. .-|++||++..+.+..+ ..+.. ..-+.|+|.-...+++++..|.
T Consensus 220 ----iS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~~---P~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 220 ----IS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPYG---PQFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred ----ee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc-ccccC---chhhhhcccccceEEEEecccc
Confidence 43 355678888887653 46789999987665432 22222 3557788877788999999999
Q ss_pred EEEEecCCCCCC-Cccc-cCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 016032 186 ARIWDIRRLEAG-SSLC-DLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 186 i~~wd~~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
..+-|..+.... ..+. .......+..+.+++++..|+.|..+|.|.+|.-+
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 999995433322 1111 11344559999999999999999999999999733
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.59 E-value=1.8e-05 Score=70.90 Aligned_cols=233 Identities=14% Similarity=0.103 Sum_probs=128.5
Q ss_pred CCCcEEEEEeC-CCcEEEeecccceeeeEecCCcccceeEEEEe--cCCCcEEEEEe------------------CCCeE
Q 016032 31 TNNHILLSGDK-KGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN--PTNDGTVYAAS------------------SDGTV 89 (396)
Q Consensus 31 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~------------------~dg~v 89 (396)
|| ++|+.-.. +..|..-++...+....+.......+..++|- |+ ..+++.++ ..+.+
T Consensus 140 dG-r~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~-t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 140 DG-RYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPR-TGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ce-eEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCC-ccEEEeCcccccccCCCCCEeecccceeEEE
Confidence 55 56666553 45566666665544433333333444444443 33 33333332 23556
Q ss_pred EEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC---C-eEEEEeCCCCCCCccceeeecCCccEE
Q 016032 90 SCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---G-FLYLVDARTNSRSGEAILIHRKGSKVV 165 (396)
Q Consensus 90 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g-~i~i~d~~~~~~~~~~~~~~~~~~~i~ 165 (396)
.+.|.++.+....+..... ...++++++++++++.+.+ | .+...+..... ....+... .+
T Consensus 218 SvID~etmeV~~qV~Vdgn----------pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---~~vvfni~--~i- 281 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDGN----------LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---WVVVFNIA--RI- 281 (635)
T ss_pred EEEECccceEEEEEEeCCC----------cccceECCCCCEEEEeccCcccCcceeeeccccCc---eEEEEchH--HH-
Confidence 7777777766666655443 4567889999999888632 2 23332221111 00000000 00
Q ss_pred EEEeccCCCCEEEEeeCCCcEEEEecCCCC--CCCccccCCCCCceeEEEEcCCCCEEEEEeC-CCcEEEEEcccccc--
Q 016032 166 GLHCNPIQPELLLSCGNDHFARIWDIRRLE--AGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNL-- 240 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~-- 240 (396)
.++.+ ++.+... .++.|.+.|.++.. ....+..+.-......+.++|||+++++++. ++++.++|+.+.+.
T Consensus 282 -ea~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 282 -EEAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred -HHhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 02234 5665555 35789999987610 1123333345566788999999999877665 89999999987553
Q ss_pred ---cCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc
Q 016032 241 ---DSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 299 (396)
Q Consensus 241 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~ 299 (396)
+.+...+... ..-...|+...|+++ |.... +-.-|.+|..|++..
T Consensus 358 ~~~~~~~~~vvae--vevGlGPLHTaFDg~---------G~ayt---slf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAE--PELGLGPLHTAFDGR---------GNAYT---TLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEe--eccCCCcceEEECCC---------CCEEE---eEeecceeEEEehHH
Confidence 1122222222 222455667888777 33333 345677899999876
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=2.6e-05 Score=73.59 Aligned_cols=201 Identities=16% Similarity=0.232 Sum_probs=128.7
Q ss_pred eeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecC----C
Q 016032 118 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR----R 193 (396)
Q Consensus 118 ~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~----~ 193 (396)
.|.++.|..+.+.++.+...|.|.+.|..+.... ....-...|.+++|+| ++.+++..+..+++.+-.-. .
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchh
Confidence 4999999999999999999999999988774321 2222334799999999 99999999888887765321 0
Q ss_pred CCC----------------CC---cccc----------C---------CCCCceeEEEEcCCCCEEEEEe-----CCCcE
Q 016032 194 LEA----------------GS---SLCD----------L---------PHKRVVNSAYFSPSGSKILTTS-----QDNRL 230 (396)
Q Consensus 194 ~~~----------------~~---~~~~----------~---------~~~~~i~~~~~~~~~~~l~~~~-----~d~~i 230 (396)
.+. ++ .+.. . .....=+++.|--||.++|+.. ....|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 000 00 0000 0 0011123588999999998832 23789
Q ss_pred EEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhc--C
Q 016032 231 RIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVM--D 308 (396)
Q Consensus 231 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~--~ 308 (396)
++||.+ |.+...... .... .-.+.|-|. |..++....-..++.|.+|.-. |-....+. .
T Consensus 225 rV~drE-g~Lns~se~----~~~l----~~~LsWkPs---------gs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~ 285 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEP----VEGL----QHSLSWKPS---------GSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPF 285 (1265)
T ss_pred EEeccc-chhhcccCc----cccc----ccceeecCC---------CCeEeeeeecCCCCcEEEEecC-CccccccccCC
Confidence 999987 554322111 1111 126889996 6666655556677789999853 33333222 2
Q ss_pred CCC-CCCcceeeeccCCcEEEe---ec-CCcEEEEcCCCc
Q 016032 309 PNI-TTISPVNKLHPRDDVLAS---GS-SRSIFIWRPKEK 343 (396)
Q Consensus 309 ~~~-~~i~~~~~~~~~~~~l~s---g~-d~~i~iw~~~~~ 343 (396)
+.. ..+..+ +|+.++..|++ .. ...|++|-+.+-
T Consensus 286 p~de~~ve~L-~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 286 PLDEKEVEEL-AWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccccchhee-eecCCCCceeeeecccccceEEEEEecCe
Confidence 221 226667 89999999988 33 455999987664
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.54 E-value=7.6e-05 Score=67.62 Aligned_cols=267 Identities=17% Similarity=0.169 Sum_probs=143.5
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCccc----ce-eEEEEecCCCcEEEEEe---------CCCeEEEEECCCCccc
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC----IV-NNIRFNPTNDGTVYAAS---------SDGTVSCTDLETGLAL 100 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~v-~~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~ 100 (396)
.++.++.++.|+-+|..+++.+......... .+ ....+. +..++.++ .++.|..+|..+|+.+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 4667778999999999999888776421110 01 112222 23455543 3688999999999988
Q ss_pred ceeecCCCCCCCCCcc------------eeeeEEEeCCCCCEEEEEecCC------------------eEEEEeCCCCCC
Q 016032 101 SLMNVNPNGWHGPRTW------------RMLYGMDINPEKGVVLVADNFG------------------FLYLVDARTNSR 150 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~l~~~~~~g------------------~i~i~d~~~~~~ 150 (396)
..+............+ ..-...++.+.+..+++++.++ .|.-+|+.+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 8776532210000000 0011344555677788887665 789999998877
Q ss_pred CccceeeecC-------Cc-cEEEEEeccCCCC---EEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCC
Q 016032 151 SGEAILIHRK-------GS-KVVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 219 (396)
Q Consensus 151 ~~~~~~~~~~-------~~-~i~~~~~~~~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (396)
.......... .. .+..+. ..++. .++.++.+|.+...|.++++..-..... ...++.+| .
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~--~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~ 339 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIK--PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--G 339 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEecc--ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--c
Confidence 6543211110 00 011111 11232 6778888999999999876653322110 11123333 2
Q ss_pred EEEEE------------------eCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCC--CCCCCceeeEeee
Q 016032 220 KILTT------------------SQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP--KDPSESLAVIGRY 279 (396)
Q Consensus 220 ~l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 279 (396)
.++.+ ..+|.+.-.|+.+|+.+-........ ..|.- ......+.+.+.+
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~-----------~~~~~g~~~~~~~~~~~g~~ 408 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIR-----------DSWNIGFPHWGGSLATAGNL 408 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccc-----------cccccCCcccCcceEecCCe
Confidence 22222 23577888888887753311110000 00000 0001123344555
Q ss_pred eeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEE
Q 016032 280 ISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLA 328 (396)
Q Consensus 280 ~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 328 (396)
+. .|+.+|.|+.+|..+|+.+.++..........+ .+..+|++.+
T Consensus 409 v~---~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~-~~~~~g~~yv 453 (488)
T cd00216 409 VF---AGAADGYFRAFDATTGKELWKFRTPSGIQATPM-TYEVNGKQYV 453 (488)
T ss_pred EE---EECCCCeEEEEECCCCceeeEEECCCCceEcCE-EEEeCCEEEE
Confidence 55 678899999999999999888765432222333 3444554333
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=5.7e-05 Score=68.76 Aligned_cols=205 Identities=13% Similarity=0.123 Sum_probs=128.0
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccc-eeEEEEecCCCcEEEEEeCCC-----eEEEEECC
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCI-VNNIRFNPTNDGTVYAASSDG-----TVSCTDLE 95 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~ 95 (396)
.|.| |++.+ ..++.|+.+|.|.+.+-.-. ...-+ +.+... |..+....+ ..+|++.+.|+ .|++|+++
T Consensus 27 ~isc--~~s~~-~~vvigt~~G~V~~Ln~s~~-~~~~f-qa~~~siv~~L~~~~~-~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSST-GSVVIGTADGRVVILNSSFQ-LIRGF-QAYEQSIVQFLYILNK-QNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCC-ceEEEeeccccEEEecccce-eeehh-eecchhhhhHhhcccC-ceEEEEEeecCCCCceEEEEeccc
Confidence 5555 55666 47999999999888764321 11222 445555 555544433 56888877664 48999997
Q ss_pred CCc------ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCC-CccceeeecCCccEEEEE
Q 016032 96 TGL------ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSR-SGEAILIHRKGSKVVGLH 168 (396)
Q Consensus 96 ~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~i~~~~ 168 (396)
.-+ ++.....-+. ..+....++.+++.+.+-..+++|-.+|.|..+.-.-... ..+....+....+|+.++
T Consensus 101 k~~~n~sP~c~~~~ri~~~--~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTI--KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred ccCCCCCcceeeeeeeecc--CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 542 2211111111 1223345588899999999999999999999885322111 113334566677999999
Q ss_pred eccCCCCE-EEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 016032 169 CNPIQPEL-LLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 169 ~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
+.. ++.. ++++ ....|.+|.+.. +. .....+ .|....+|..+++....+++++ ...+.+|+.....
T Consensus 179 ~~~-d~~s~lFv~-Tt~~V~~y~l~g-r~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 179 LRS-DGKSVLFVA-TTEQVMLYSLSG-RT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred Eec-CCceeEEEE-ecceeEEEEecC-CC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 987 6665 3333 345799999873 22 223323 5677889999998655566555 4479999987433
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.52 E-value=9.2e-05 Score=59.62 Aligned_cols=212 Identities=12% Similarity=0.060 Sum_probs=116.8
Q ss_pred eeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 14 AVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
+.+.+-...+..|+|+|+.+.++++....+.|...+.. ++.+..+.-.-.+..-.|++..+ +.++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEEEE
Confidence 45667777899999999876888888888999888875 44444443222456788888766 66666666689999999
Q ss_pred CCCCcc-c-----ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCC--CCCCcccee------eec
Q 016032 94 LETGLA-L-----SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDART--NSRSGEAIL------IHR 159 (396)
Q Consensus 94 ~~~~~~-~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~--~~~~~~~~~------~~~ 159 (396)
+..... + ..+..... ......+-.++|++.++.|+++-......+|.+.. ......... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~----~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFP----NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp E----TT--EEEEEEEE---S-------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EeccccccchhhceEEecccc----cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 844321 1 11221111 11123378999999988888888777767776654 111111000 011
Q ss_pred CCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCC-------CCCceeEEEEcCCCCEEEEEeCCCcEEE
Q 016032 160 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-------HKRVVNSAYFSPSGSKILTTSQDNRLRI 232 (396)
Q Consensus 160 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i 232 (396)
.-..+.+++++|..+++++....+..|..+|. +++....+.... .-...-.|+|.++|++.+++ .-+...+
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 22357899999977778888888888988884 333222221111 11357889999999765554 4444444
Q ss_pred E
Q 016032 233 W 233 (396)
Q Consensus 233 w 233 (396)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 3
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=0.00031 Score=61.69 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=79.9
Q ss_pred cEEEEEeccCCCCEEEEee----CCCc----EEEEecCCCCCCC-ccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEE
Q 016032 163 KVVGLHCNPIQPELLLSCG----NDHF----ARIWDIRRLEAGS-SLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~----~d~~----i~~wd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 233 (396)
...++.|+-.+++.+.+.. .+|. -.+|+....+... .+..+.....|.+++++|+...|+.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 4567777765666665542 2343 3456654332211 12233678889999999999999999999999999
Q ss_pred EcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccch
Q 016032 234 DSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQL 302 (396)
Q Consensus 234 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~ 302 (396)
|...+.... ......|..++|+|+ |.++. .|+..|.+.+||+.-...
T Consensus 287 D~~~~~t~~----------~ka~~~P~~iaWHp~---------gai~~---V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 287 DTTRGVTLL----------AKAEFIPTLIAWHPD---------GAIFV---VGSEQGELQCFDMALSPI 333 (545)
T ss_pred EcCCCeeee----------eeecccceEEEEcCC---------CcEEE---EEcCCceEEEEEeecCcc
Confidence 997653211 122233557999998 66666 789999999999864443
No 333
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.50 E-value=0.0009 Score=61.05 Aligned_cols=305 Identities=17% Similarity=0.123 Sum_probs=165.3
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCccccee----------EEEEecCCCcEEEEEeCCCeEEEEECCCCcccceee
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVN----------NIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 104 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 104 (396)
.|+.++.++.|+-.|..+++.+..+...-...+. .+++. +..++.++.|+.|.-.|..+|+.+....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 4666777889999999998887776421111111 12222 3567778889999999999999887765
Q ss_pred cCCCCCCCCCcceeeeEEEeCC--CCCEEEEEec------CCeEEEEeCCCCCCCccceeeecC----------------
Q 016032 105 VNPNGWHGPRTWRMLYGMDINP--EKGVVLVADN------FGFLYLVDARTNSRSGEAILIHRK---------------- 160 (396)
Q Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------~g~i~i~d~~~~~~~~~~~~~~~~---------------- 160 (396)
...... . ..+.-+| .+..++++.. +|.|.-+|.++++...........
T Consensus 148 ~~~~~~-~-------~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 148 NGDYKA-G-------YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred cccccc-c-------ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 421110 0 0011111 1234555432 678999999887765433221110
Q ss_pred ------------Ccc-EEEEEeccCCCCEEEEeeCC-----C-----------cEEEEecCCCCCCCccccCCCC-----
Q 016032 161 ------------GSK-VVGLHCNPIQPELLLSCGND-----H-----------FARIWDIRRLEAGSSLCDLPHK----- 206 (396)
Q Consensus 161 ------------~~~-i~~~~~~~~~~~~l~~~~~d-----~-----------~i~~wd~~~~~~~~~~~~~~~~----- 206 (396)
+.. -..+++.| ...+++.+... + .|.-.|+++++..-.++...|.
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d 298 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYD 298 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcccc
Confidence 111 12346666 45555555422 1 5666677776654444443332
Q ss_pred --CceeEEEEcCCCC---EEEEEeCCCcEEEEEcccccccCCCccee-----eccc------------------------
Q 016032 207 --RVVNSAYFSPSGS---KILTTSQDNRLRIWDSIFGNLDSPSREIV-----HSHD------------------------ 252 (396)
Q Consensus 207 --~~i~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~~------------------------ 252 (396)
....-+.+..+|+ .++.+..+|.+.+.|.++|+.+.+..... ....
T Consensus 299 ~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~ 378 (527)
T TIGR03075 299 GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVG 378 (527)
T ss_pred CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeE
Confidence 1222233334666 77899999999999999998753211000 0000
Q ss_pred ----ccccCCceeEEeCCCCCCCceeeEe-------e---------eeeee-----cccccccceEEEEcCccchhhhhc
Q 016032 253 ----FNRHLTPFRAEWDPKDPSESLAVIG-------R---------YISEN-----YNGAALHPIDFIDITTGQLVAEVM 307 (396)
Q Consensus 253 ----~~~~~~~~~~~~~~~~~~~~~~~~g-------~---------~~~~~-----~~g~~d~~i~vwd~~~~~~~~~~~ 307 (396)
..+...--..+++|......+.... . |+... .....-+.|.-+|+.+|+.+-+..
T Consensus 379 ~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~ 458 (527)
T TIGR03075 379 VCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHK 458 (527)
T ss_pred ECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEec
Confidence 0000000014455543211111100 0 00000 001124678899999998887665
Q ss_pred CCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccce
Q 016032 308 DPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMK 354 (396)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~ 354 (396)
... ...... ..-.+.+++.++ ||.++.+|..+|+++.+++....
T Consensus 459 ~~~-p~~~~~--l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~ 503 (527)
T TIGR03075 459 EDF-PLWGGV--LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSG 503 (527)
T ss_pred CCC-CCCCcc--eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCC
Confidence 432 112221 223455677788 99999999999999998877554
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.45 E-value=0.00018 Score=60.22 Aligned_cols=242 Identities=14% Similarity=0.072 Sum_probs=131.4
Q ss_pred cEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceee---cCCC--
Q 016032 34 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN---VNPN-- 108 (396)
Q Consensus 34 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~-- 108 (396)
+.|+.|..+| +.+++........... +...|..+...|+ -+.|++-+ |+.+.++++..-....... .+..
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~-~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPE-LNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecc-cCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 4688888888 9999994433333332 4445999999998 66666655 5999999998755444211 0000
Q ss_pred CCCCCCcceeeeEEE--eCCCCCEEEEEecCCeEEEEeCCCCCCCc-cceeeecCCccEEEEEeccCCCCEEEEeeCCCc
Q 016032 109 GWHGPRTWRMLYGMD--INPEKGVVLVADNFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF 185 (396)
Q Consensus 109 ~~~~~~~~~~v~~~~--~~~~~~~l~~~~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 185 (396)
..........+..++ -...+...++......|.+|......... .......-...+..++|.+ +.++.|.. ..
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~---~~i~v~~~-~~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG---NKICVGTS-KG 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC---CEEEEEeC-Cc
Confidence 000000011133333 12334444444445588888877642222 2222233335788999974 66777764 45
Q ss_pred EEEEecCCCCCCCccccCC----------CCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccc
Q 016032 186 ARIWDIRRLEAGSSLCDLP----------HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNR 255 (396)
Q Consensus 186 i~~wd~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 255 (396)
..+.|+.+........... ...++..+... ++.+|++- +..-.+.|. .|+..+
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r------------- 221 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSR------------- 221 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCc-------------
Confidence 8888887644432221111 11233333333 45555543 333333333 333211
Q ss_pred cCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCC
Q 016032 256 HLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPN 310 (396)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~ 310 (396)
...+.|... ...+.....|+. +-.++.|.||++.++++++++..+.
T Consensus 222 ---~~~i~W~~~--p~~~~~~~pyli----~~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 222 ---KSTIQWSSA--PQSVAYSSPYLI----AFSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred ---ccEEEcCCc--hhEEEEECCEEE----EECCCEEEEEECcCCcEEEEEECCC
Confidence 114556442 234555566776 3444669999999999988876543
No 335
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.40 E-value=0.00065 Score=56.88 Aligned_cols=248 Identities=14% Similarity=0.061 Sum_probs=132.9
Q ss_pred CcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccce-
Q 016032 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAI- 155 (396)
Q Consensus 77 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~- 155 (396)
++.|+.|..+| |.++++........+... ..|..+...++-+.+++-+ |+.++++++..........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----------~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL----------SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec----------ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 67899999888 889998322222221110 1288888888877666655 4999999987654433110
Q ss_pred ----------eeecCCccEEEEE-eccCCCCEEEEeeCCCcEEEEecCCCCC-C-CccccCCCCCceeEEEEcCCCCEEE
Q 016032 156 ----------LIHRKGSKVVGLH-CNPIQPELLLSCGNDHFARIWDIRRLEA-G-SSLCDLPHKRVVNSAYFSPSGSKIL 222 (396)
Q Consensus 156 ----------~~~~~~~~i~~~~-~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~-~~~~~~~~~~~i~~~~~~~~~~~l~ 222 (396)
........+..++ -....+...++......|.+|....... . ..+..+.-...+..++|. ++.|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEE
Confidence 0111111344444 1121333344444456899988865322 2 344445566889999997 56777
Q ss_pred EEeCCCcEEEEEcccccccCCCcceeecc---cccccCCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCc
Q 016032 223 TTSQDNRLRIWDSIFGNLDSPSREIVHSH---DFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITT 299 (396)
Q Consensus 223 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~ 299 (396)
.|..+ ...+.|+.++....-........ .......+..+.--++ +.++. +.+. +-+|=-..
T Consensus 153 v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~e~Ll-----~~~~-~g~fv~~~ 216 (275)
T PF00780_consen 153 VGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD---------NEFLL-----CYDN-IGVFVNKN 216 (275)
T ss_pred EEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC---------ceEEE-----Eecc-eEEEEcCC
Confidence 77654 57888998765422110000000 0001111111111111 34443 1122 22222234
Q ss_pred cchhh--hhcCCCCCCCcceeeeccCCcEEEeecCCcEEEEcCCCcceeeeccccceEEEee
Q 016032 300 GQLVA--EVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSELVEQKEEMKIIVCG 359 (396)
Q Consensus 300 ~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 359 (396)
|+..+ .+.-. .....+ .-...+|+.-.++.|.||++.+++.++.+..+.-...+.
T Consensus 217 G~~~r~~~i~W~--~~p~~~---~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~l~~ 273 (275)
T PF00780_consen 217 GEPSRKSTIQWS--SAPQSV---AYSSPYLIAFSSNSIEVRSLETGELVQTIPLPNIRLLCS 273 (275)
T ss_pred CCcCcccEEEcC--CchhEE---EEECCEEEEECCCEEEEEECcCCcEEEEEECCCEEEEec
Confidence 44333 22221 122222 224568888776779999999999999999887766554
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=1.1e-05 Score=73.28 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=62.0
Q ss_pred eEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECC
Q 016032 23 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 95 (396)
Q Consensus 23 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 95 (396)
+++++|+|.. .+|+.|-.-|.+.+|...+.+..... ..|..+|..+.|+|+ ++.++++..-|.|.+|...
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~-~th~a~i~~l~wS~~-G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVV-ETHPAPIQGLDWSHD-GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeec-cCCCCCceeEEecCC-CCeEEEcCCCceeEEEEee
Confidence 5679999987 78999999999999998876655555 569999999999999 9999999999999999886
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00013 Score=66.66 Aligned_cols=219 Identities=12% Similarity=0.110 Sum_probs=127.0
Q ss_pred EeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCC-----cEEEEecCCCCCC
Q 016032 123 DINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH-----FARIWDIRRLEAG 197 (396)
Q Consensus 123 ~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~ 197 (396)
+|++.+..++.|+.+|.|.+++-.-.. ..-...+.++ .+..+.... ..++|++.+.|+ .|++|++...+..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~--~~~fqa~~~s-iv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQL--IRGFQAYEQS-IVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccccee--eehheecchh-hhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCC
Confidence 477889999999999999998754311 0111222222 244443333 456888877665 4899998754322
Q ss_pred ---Ccc---ccCC-----CCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCC
Q 016032 198 ---SSL---CDLP-----HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDP 266 (396)
Q Consensus 198 ---~~~---~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (396)
.++ ...+ ...++.+++.+.+-+.+|+|-.+|.|..+.-+--+-... .....+ .+......+.+..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs--r~~~~~--~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS--RQDYSH--RGKEPITGLALRS 181 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc--ceeeec--cCCCCceeeEEec
Confidence 222 1112 356788999999999999999999999885331111000 000111 1111112333333
Q ss_pred CCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeecCCcEEEEcCCCccee
Q 016032 267 KDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGSSRSIFIWRPKEKSEL 346 (396)
Q Consensus 267 ~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~d~~i~iw~~~~~~~~ 346 (396)
+ +..+. -......|.+|.+....+......+++....|. ++++....++++++..|.+|+.+.....
T Consensus 182 d---------~~s~l---Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCs-s~~~~t~qfIca~~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 182 D---------GKSVL---FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCS-SFSDGTYQFICAGSEFLYFYDSDGRGPC 248 (933)
T ss_pred C---------CceeE---EEEecceeEEEEecCCCcceeeeccCCccceee-ecCCCCccEEEecCceEEEEcCCCccee
Confidence 2 22211 012345688999874333333344554566655 6776666577777788999999988777
Q ss_pred eecc-ccceEEEeecCC
Q 016032 347 VEQK-EEMKIIVCGKAD 362 (396)
Q Consensus 347 ~~~~-~~~~~~~~~~~~ 362 (396)
..+. ++.....|...+
T Consensus 249 faf~~g~kk~~~~~~~g 265 (933)
T KOG2114|consen 249 FAFEVGEKKEMLVFSFG 265 (933)
T ss_pred eeecCCCeEEEEEEecC
Confidence 7777 666665554433
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=2.5e-05 Score=69.41 Aligned_cols=116 Identities=9% Similarity=0.045 Sum_probs=88.7
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCC
Q 016032 119 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS 198 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~ 198 (396)
+.--+++..+.+++.|+..|.+++|+-..+...... .....+.+..+..++ +..++|+|+..|.|.++-+.......
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~--~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK--NEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhccc--ccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCc
Confidence 444556778899999999999999998776543222 112333566677788 88899999999999999887644333
Q ss_pred ccccC----CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 199 SLCDL----PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 199 ~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
....- .|...|++++|++++..|++|...|.|.+-.+.+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22211 3678999999999999999999999999988876
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.30 E-value=0.0022 Score=56.68 Aligned_cols=255 Identities=11% Similarity=0.065 Sum_probs=128.5
Q ss_pred cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEE
Q 016032 44 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMD 123 (396)
Q Consensus 44 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 123 (396)
.|+||+............ + +.|.++.|+.+ ..|+....||.++++|+.. +. .+...............+....
T Consensus 62 ~I~iys~sG~ll~~i~w~-~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G-~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWD-S-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFG-EF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCEeEEEEEC-C-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCC-ce--eechhhhccccCcccccccccc
Confidence 488998876544333322 2 89999999875 5566667899999999873 33 2222211100000001122223
Q ss_pred eCCCCCEEEEEecCCeEEEEeCCCCC-CCccc---ee----eecCCccEEE-EEeccCCCCEEEEeeCCCcEEEEecCCC
Q 016032 124 INPEKGVVLVADNFGFLYLVDARTNS-RSGEA---IL----IHRKGSKVVG-LHCNPIQPELLLSCGNDHFARIWDIRRL 194 (396)
Q Consensus 124 ~~~~~~~l~~~~~~g~i~i~d~~~~~-~~~~~---~~----~~~~~~~i~~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 194 (396)
+..+| ++.-..++.+.+..-.... ..... .. .+... .... ..+.. +....+....++.+.+.+-...
T Consensus 135 ~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~-~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 135 FYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWP-SWTVIPLLSS-DRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred cCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccccccc-ccccceEeec-CcceEEEEecCCEEEEEEcccc
Confidence 33344 3333344555544322211 10000 00 00000 0111 22333 4444455555566664443221
Q ss_pred CCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCcee
Q 016032 195 EAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLA 274 (396)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (396)
.. ....+++..++.||++++||.-..+|.+.+.+..-.+. ...........|..+.|.-+
T Consensus 211 ---~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~-------~~e~~~~~~~~p~~~~WCG~------- 270 (410)
T PF04841_consen 211 ---KQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK-------LCEFDTDSKSPPKQMAWCGN------- 270 (410)
T ss_pred ---cc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce-------eEEeecCcCCCCcEEEEECC-------
Confidence 11 22356899999999999999999999998887654332 22223333344456666543
Q ss_pred eEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec-CCcEEEEcCCCcceeeeccccc
Q 016032 275 VIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 353 (396)
Q Consensus 275 ~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~ 353 (396)
|..+-.|. ..+ .+.++....+ .|.-++..++..- || +||..-...+.++.+....
T Consensus 271 --------------dav~l~~~----~~l-~lvg~~~~~~----~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~ 326 (410)
T PF04841_consen 271 --------------DAVVLSWE----DEL-LLVGPDGDSI----SFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDST 326 (410)
T ss_pred --------------CcEEEEeC----CEE-EEECCCCCce----EEeccCceEEeccCCc-eEEEeCCceEEEEECCHHH
Confidence 22223331 111 1222322222 2444455445555 66 8888877777777776543
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00052 Score=60.09 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=137.9
Q ss_pred eEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC---CCeEEEEECCCCcc
Q 016032 23 VTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---DGTVSCTDLETGLA 99 (396)
Q Consensus 23 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~ 99 (396)
-..++.++.+.+.+++...+..|.+.|..+.........+. ....++++|+ +..++.+.. ++++.+.|..++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPD-GKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCC-CCEEEEEecccCCceEEEEeCCCCeE
Confidence 34678888887777777778899999987776666654433 6788999999 655555444 68999999888887
Q ss_pred cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe-cCCeEEEEeCCCCCCCc-cceeeecCCccEEEEEeccCCCCEE
Q 016032 100 LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NFGFLYLVDARTNSRSG-EAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~i~d~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
......... ...++++|++..++... .++.|.+.|........ ..............+.+.| ++..+
T Consensus 153 ~~~~~vG~~----------P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~-~g~~~ 221 (381)
T COG3391 153 TATIPVGNT----------PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP-DGNRV 221 (381)
T ss_pred EEEEecCCC----------cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC-CCCEE
Confidence 776433221 36789999999777665 77899999977654431 1100122223456788899 77755
Q ss_pred EEeeCC---CcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeC-CCcEEEEEcccccc
Q 016032 178 LSCGND---HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ-DNRLRIWDSIFGNL 240 (396)
Q Consensus 178 ~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~ 240 (396)
.+.... +.+...|..+..........+.. ....+..+|+|..+.+... .+.+.+-|..+...
T Consensus 222 yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 222 YVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 554433 58888888764332221111222 4667899999999988744 47899988887665
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=2e-05 Score=71.56 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=84.0
Q ss_pred eEEEEecCCCcEEEEEeC----CCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEE
Q 016032 68 NNIRFNPTNDGTVYAASS----DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 143 (396)
Q Consensus 68 ~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~ 143 (396)
+-..|+|. ..+|++++. .|+|.||- ++|++......+ ..+.+++|+|..-.|+.|-.-|.+.+|
T Consensus 19 ti~SWHPs-ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P----------~hatSLCWHpe~~vLa~gwe~g~~~v~ 86 (1416)
T KOG3617|consen 19 TISSWHPS-EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP----------VHATSLCWHPEEFVLAQGWEMGVSDVQ 86 (1416)
T ss_pred cccccCCC-CceeEEEEecCCCCceEEEEe-cCCCCCcccccc----------eehhhhccChHHHHHhhccccceeEEE
Confidence 44568888 777777653 57888884 667755444332 227789999999999999999999999
Q ss_pred eCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecC
Q 016032 144 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 192 (396)
Q Consensus 144 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 192 (396)
...+.+... ....|..+|..+.|++ +|+.++++..-|.|.+|...
T Consensus 87 ~~~~~e~ht---v~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 87 KTNTTETHT---VVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ecCCceeee---eccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 987754332 2345666899999999 99999999999999999765
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.28 E-value=0.0012 Score=53.30 Aligned_cols=165 Identities=16% Similarity=0.226 Sum_probs=94.6
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
.+-...+..|+|+|+.+.++++....+.|...+. +|+.+..+.+.... ..-.+++..++.++++.-.++.+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~--------D~EgI~y~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFG--------DYEGITYLGNGRYVLSEERDQRL 88 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-S--------SEEEEEE-STTEEEEEETTTTEE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCC--------CceeEEEECCCEEEEEEcCCCcE
Confidence 4455569999999985667777788889988886 47888877664321 26788888888777776678999
Q ss_pred EEEeCCCCCCCccc-----ee---eecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcc--------c-cC
Q 016032 141 YLVDARTNSRSGEA-----IL---IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL--------C-DL 203 (396)
Q Consensus 141 ~i~d~~~~~~~~~~-----~~---~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--------~-~~ 203 (396)
.++++......... +. .......+-.++|.| .++.|+.+-+..-..+|.++.......+ . ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 99988443221111 01 112334588999999 6666666666666777776531110010 0 00
Q ss_pred CCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEc
Q 016032 204 PHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 204 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~ 235 (396)
.....+.+++++| .+.+++.+.....|..+|.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 1334578899999 5566677777778888873
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.21 E-value=0.0015 Score=51.52 Aligned_cols=146 Identities=15% Similarity=0.095 Sum_probs=90.4
Q ss_pred ecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 016032 73 NPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG 152 (396)
Q Consensus 73 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~ 152 (396)
.++...+++.|+..+.+.--|..+|.....-..... +.+-+.- -|++++.|..+|.+++.+..++....
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~R----------iE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w 87 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR----------IECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIW 87 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehhhCce----------eeeeeEE-ECCEEEEEEccCcEEEEEecchhhee
Confidence 344357888889999999999988887655433211 2222222 47789999999999999999987665
Q ss_pred cceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC-CCCEEEEEeCCCcEE
Q 016032 153 EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLR 231 (396)
Q Consensus 153 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~ 231 (396)
.......- -......+ ++.++.+|+.|++.+..|.++.......+- ..+...+-+..| ++. |..+...|.+.
T Consensus 88 ~f~~~~~v---k~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskc--gG~~f~sP~i~~g~~s-ly~a~t~G~vl 160 (354)
T KOG4649|consen 88 NFVILETV---KVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKC--GGGTFVSPVIAPGDGS-LYAAITAGAVL 160 (354)
T ss_pred eeeehhhh---ccceEEcC-CCceEEEecCCCcEEEecccccceEEeccc--CCceeccceecCCCce-EEEEeccceEE
Confidence 44332221 11233455 889999999999999999987544322211 112223344555 443 44444455554
Q ss_pred EEEcc
Q 016032 232 IWDSI 236 (396)
Q Consensus 232 iwd~~ 236 (396)
--...
T Consensus 161 avt~~ 165 (354)
T KOG4649|consen 161 AVTKN 165 (354)
T ss_pred EEccC
Confidence 44433
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.00014 Score=63.92 Aligned_cols=195 Identities=12% Similarity=0.138 Sum_probs=116.1
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCC---CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCe-
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKK---GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGT- 88 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~- 88 (396)
.+.+..-...+..-+|+|++..+....-.. ..+.++++.++....... ....-...+|+|++..++++...||.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCc
Confidence 344444556677889999986544332222 359999999887666653 44555678899995555566666776
Q ss_pred -EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC-C--eEEEEeCCCCCCCccceeeecCCccE
Q 016032 89 -VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-G--FLYLVDARTNSRSGEAILIHRKGSKV 164 (396)
Q Consensus 89 -v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~i~d~~~~~~~~~~~~~~~~~~~i 164 (396)
|.+.|+.+++... +.... + . -..=.|+|+|+.++..+.. | .|.++++...... .+..... .-
T Consensus 263 ~iy~~dl~~~~~~~-Lt~~~-g---i-----~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~--riT~~~~--~~ 328 (425)
T COG0823 263 DIYLMDLDGKNLPR-LTNGF-G---I-----NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT--RLTFSGG--GN 328 (425)
T ss_pred cEEEEcCCCCccee-cccCC-c---c-----ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee--EeeccCC--CC
Confidence 5555666665322 21111 1 0 1244589999998877544 4 5666677665432 1122222 22
Q ss_pred EEEEeccCCCCEEEEeeCC-Cc--EEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC
Q 016032 165 VGLHCNPIQPELLLSCGND-HF--ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 227 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d-~~--i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 227 (396)
..-.|+| ++.+|+..+.. |. |.+.|+.+... +..+........-.|.+++..+...+..
T Consensus 329 ~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 329 SNPVWSP-DGDKIVFESSSGGQWDIDKNDLASGGK---IRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred cCccCCC-CCCEEEEEeccCCceeeEEeccCCCCc---EEEccccccCCCCCcCCCCceEEEeccC
Confidence 3778999 99988877643 44 56666654332 3333344444556778888877655443
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.20 E-value=0.00013 Score=65.55 Aligned_cols=153 Identities=8% Similarity=0.028 Sum_probs=93.2
Q ss_pred EecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe----------------------
Q 016032 27 EFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS---------------------- 84 (396)
Q Consensus 27 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~---------------------- 84 (396)
=+.|||..+..+.-..+.+.+.|..+.+....+. -......+.++|+ +.++++.+
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~--Vdgnpd~v~~spd-Gk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM--VDGNLDNVDTDYD-GKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEE--eCCCcccceECCC-CCEEEEeccCcccCcceeeeccccCceEEE
Confidence 3455663222333345667777777665555443 2224455667776 55555553
Q ss_pred ------------------CCCeEEEEECCC-----CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-CCeE
Q 016032 85 ------------------SDGTVSCTDLET-----GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-FGFL 140 (396)
Q Consensus 85 ------------------~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i 140 (396)
.++.|.+.|..+ ...+..+.... ....++++|||+++++++. +..+
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK----------sPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPK----------NPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCC----------CccceEECCCCCEEEEeCCCCCcE
Confidence 124466666665 23333333332 2678999999999887754 7899
Q ss_pred EEEeCCCCCCCc-------c-ceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCC
Q 016032 141 YLVDARTNSRSG-------E-AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 193 (396)
Q Consensus 141 ~i~d~~~~~~~~-------~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 193 (396)
.++|+.+.+... . ......-+......+|.+ +++.+.+..-|..|..|++..
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 999998855311 0 011111233456778888 888888888999999999864
No 346
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.20 E-value=1e-06 Score=77.00 Aligned_cols=166 Identities=20% Similarity=0.265 Sum_probs=109.0
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeC----CCcEEEeecccc--e--eeeEecCCcccceeEEEEecCCCcEEEEEeCC
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDK----KGQVGVWDFYKV--S--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD 86 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 86 (396)
...+|....++++|++-...+||.|-. |..+.|||+.+. . ....+..+-.....+++|..+ ..++++|...
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~s 175 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTS 175 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC-cchhhccccc
Confidence 455688899999999975567887743 567999999875 1 111221224455678999977 8888899888
Q ss_pred CeEEEEECCCCc-ccceeecCCCCCCCCCcceeeeEEEeCC-CCCEEEEEecCCeEEEEe-CCCCCCCcccee--eecCC
Q 016032 87 GTVSCTDLETGL-ALSLMNVNPNGWHGPRTWRMLYGMDINP-EKGVVLVADNFGFLYLVD-ARTNSRSGEAIL--IHRKG 161 (396)
Q Consensus 87 g~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~i~d-~~~~~~~~~~~~--~~~~~ 161 (396)
..++++|++... ....+ ... .+..+...| .++++++-. +|.|.+|| .+.-+.....+. .....
T Consensus 176 r~~~ifdlRqs~~~~~sv--nTk---------~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~ 243 (783)
T KOG1008|consen 176 RSVHIFDLRQSLDSVSSV--NTK---------YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKP 243 (783)
T ss_pred chhhhhhhhhhhhhhhhh--hhh---------hcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcc
Confidence 899999998422 11111 111 156677788 566666555 99999999 333222221111 11112
Q ss_pred ccEEEEEeccCCCCEEEEeeC-CCcEEEEecCC
Q 016032 162 SKVVGLHCNPIQPELLLSCGN-DHFARIWDIRR 193 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~-d~~i~~wd~~~ 193 (396)
..+..++|.|....++++.+. .++|+++|+..
T Consensus 244 ~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 244 KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 358999999976667777765 47899999864
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.17 E-value=0.0039 Score=57.01 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=89.7
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCc-c--cceeE-EEEecCCCcEEEEEe------CCCeEEEEECCCCcccceee
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIH-S--CIVNN-IRFNPTNDGTVYAAS------SDGTVSCTDLETGLALSLMN 104 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~v~~-~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~ 104 (396)
.++.++.|+.+.-.|..+++.+....... . ..+.+ .... +..++.+. .+|.|..+|.++|+.+..+.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE---CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 36667788999999999988877653211 1 11111 1111 23455543 26899999999999877655
Q ss_pred cCCCCC-------------CC----------CCcceeeeEEEeCCCCCEEEEEecC-----C-----------eEEEEeC
Q 016032 105 VNPNGW-------------HG----------PRTWRMLYGMDINPEKGVVLVADNF-----G-----------FLYLVDA 145 (396)
Q Consensus 105 ~~~~~~-------------~~----------~~~~~~v~~~~~~~~~~~l~~~~~~-----g-----------~i~i~d~ 145 (396)
..+... .+ +.....-..+++.+...+++.+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 432210 00 0000111234677777777776533 2 5666788
Q ss_pred CCCCCCccceeeecCC-------ccEEEEEeccCCCC---EEEEeeCCCcEEEEecCCCCC
Q 016032 146 RTNSRSGEAILIHRKG-------SKVVGLHCNPIQPE---LLLSCGNDHFARIWDIRRLEA 196 (396)
Q Consensus 146 ~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~---~l~~~~~d~~i~~wd~~~~~~ 196 (396)
++++........ .|+ ....-+.... ++. .++.+..+|.+++.|.++++.
T Consensus 279 ~TG~~~W~~Q~~-~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 279 DTGKIKWHYQTT-PHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ccCCEEEeeeCC-CCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCce
Confidence 887765443221 111 1112222222 454 788899999999999987665
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.00081 Score=57.65 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=107.2
Q ss_pred cEEEEEeC----------CCcEEEeecccc-----eeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 34 HILLSGDK----------KGQVGVWDFYKV-----SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 34 ~~l~s~~~----------dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
.+|+.|.. .|.|.++++... +..........++|++++-.. +. |+.+. .+.|.+|++...+
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTS
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcc
Confidence 67777753 288999999884 333332344678899998773 34 55444 5789999998877
Q ss_pred -ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEE
Q 016032 99 -ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 99 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
....-..+... .+.++.. .++++++|+....+.++....................++++.+.+ +++.+
T Consensus 119 ~l~~~~~~~~~~--------~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~ 187 (321)
T PF03178_consen 119 TLLKKAFYDSPF--------YITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTI 187 (321)
T ss_dssp SEEEEEEE-BSS--------SEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEE
T ss_pred cchhhheecceE--------EEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEE
Confidence 33332221111 1444444 466999999888888775544222112222233344688888886 45799
Q ss_pred EEeeCCCcEEEEecCCCCC----CC----ccccCCCCCceeEE---EEcCC--CC------EEEEEeCCCcEEEE
Q 016032 178 LSCGNDHFARIWDIRRLEA----GS----SLCDLPHKRVVNSA---YFSPS--GS------KILTTSQDNRLRIW 233 (396)
Q Consensus 178 ~~~~~d~~i~~wd~~~~~~----~~----~~~~~~~~~~i~~~---~~~~~--~~------~l~~~~~d~~i~iw 233 (396)
+++..+|.|.++....... .. ....+.....|+++ ++.|. +. .++.++.+|.|.+.
T Consensus 188 i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999999999998763111 11 11222345567777 44441 22 47778889988843
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.13 E-value=0.0012 Score=57.41 Aligned_cols=277 Identities=14% Similarity=0.152 Sum_probs=133.9
Q ss_pred cCCCCcEEEEE--------eCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc
Q 016032 29 HPTNNHILLSG--------DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 100 (396)
Q Consensus 29 ~~~~~~~l~s~--------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 100 (396)
|||+..+|+.. +..+.+.|+|+.++....... ....+....|+|+ ++.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP--PPPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC--CccccccceeecC-CCeeEEEe-cCceEEEECCCCCeE
Confidence 57774444421 224679999999876555542 3678999999999 88887776 678999998877443
Q ss_pred ceeecCCCC-CCCCCc-------ceeeeEEEeCCCCCEEEEEecC-Ce--------------------------------
Q 016032 101 SLMNVNPNG-WHGPRT-------WRMLYGMDINPEKGVVLVADNF-GF-------------------------------- 139 (396)
Q Consensus 101 ~~~~~~~~~-~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~-g~-------------------------------- 139 (396)
......... ..+... ...-.++-|+|++++|+....| ..
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 322211000 011110 1124568899999998876332 11
Q ss_pred ---EEEEeCCCCCCCcccee--eecCCccEEEEEeccCCCCEEEE--eeCCC---cEEEEecCCCCCCCccccCCCCCc-
Q 016032 140 ---LYLVDARTNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLS--CGNDH---FARIWDIRRLEAGSSLCDLPHKRV- 208 (396)
Q Consensus 140 ---i~i~d~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~--~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~- 208 (396)
+.++|+.+++....... .......+..+.|.+ ++..|+. ...+. .+.+.|..++....... ......
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv 234 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWV 234 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcce
Confidence 22344444332210000 112344688899988 6663333 22222 36666776543322221 112222
Q ss_pred --eeEEEEc-CCCC-EEEEEeCCCcEEEE--EcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeee
Q 016032 209 --VNSAYFS-PSGS-KILTTSQDNRLRIW--DSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE 282 (396)
Q Consensus 209 --i~~~~~~-~~~~-~l~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 282 (396)
-....|. +++. +|.....+|.-+|| +...+... .+....+.-. -.+.|++.. +.+..
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-----~lT~G~~~V~---~i~~~d~~~---------~~iyf 297 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-----QLTSGDWEVT---SILGWDEDN---------NRIYF 297 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-----ESS-SSS-EE---EEEEEECTS---------SEEEE
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-----ccccCceeec---ccceEcCCC---------CEEEE
Confidence 2345554 5444 45555567765554 54444311 1111111100 134555552 22221
Q ss_pred eccc--ccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEee
Q 016032 283 NYNG--AALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG 330 (396)
Q Consensus 283 ~~~g--~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg 330 (396)
..++ .....|+.-++..+..+..+....... ..+ .|||++++++-.
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~-~~Spdg~y~v~~ 345 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-YSA-SFSPDGKYYVDT 345 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTEEEESSTTSSTT-EEE-EE-TTSSEEEEE
T ss_pred EecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-eEE-EECCCCCEEEEE
Confidence 1122 223455555666233333444332222 344 799999988763
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.12 E-value=0.00053 Score=64.09 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=97.6
Q ss_pred CcEEEEE-eCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCC-----CCCEEEEEecCCeEEEEeCCCCCC
Q 016032 77 DGTVYAA-SSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP-----EKGVVLVADNFGFLYLVDARTNSR 150 (396)
Q Consensus 77 ~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~g~i~i~d~~~~~~ 150 (396)
..+|+.- .....|+-.|++.|+.+..+..+.... +..++-.. .....+.|-.+..+..||++....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~--------v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~ 564 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP--------VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN 564 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc--------eeEecccccccccCCCceEEEECCCceEEeccCCCCC
Confidence 3444443 346789999999999999998765421 33322211 134567788889999999997541
Q ss_pred --CccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCC
Q 016032 151 --SGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 228 (396)
Q Consensus 151 --~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 228 (396)
...............|++-. ...+||+|+.+|.||+||--.......+ .+-..+|..|..+.||++|++.+ +.
T Consensus 565 k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~l--p~lG~pI~~iDvt~DGkwilaTc-~t 639 (794)
T PF08553_consen 565 KLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTAL--PGLGDPIIGIDVTADGKWILATC-KT 639 (794)
T ss_pred ceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcC--CCCCCCeeEEEecCCCcEEEEee-cc
Confidence 11111122233457777766 4567999999999999994322211222 25578999999999999988766 56
Q ss_pred cEEEEEcc
Q 016032 229 RLRIWDSI 236 (396)
Q Consensus 229 ~i~iwd~~ 236 (396)
.|.+++..
T Consensus 640 yLlLi~t~ 647 (794)
T PF08553_consen 640 YLLLIDTL 647 (794)
T ss_pred eEEEEEEe
Confidence 78888874
No 351
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=0.0024 Score=51.44 Aligned_cols=173 Identities=14% Similarity=0.050 Sum_probs=109.4
Q ss_pred eccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECC
Q 016032 16 IRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE 95 (396)
Q Consensus 16 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 95 (396)
+.|-...|.++.|+|+.+ .|++......-.||=...+..+.++.-..-...-.|.+..+ +.+.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEEc
Confidence 345556699999999985 55555555666666555566665553222334456777766 7777777778999988887
Q ss_pred CCcccceeec---CCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCcccee--eecC-----CccEE
Q 016032 96 TGLALSLMNV---NPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL--IHRK-----GSKVV 165 (396)
Q Consensus 96 ~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~--~~~~-----~~~i~ 165 (396)
.......... +-... .........++|.|....|+.+-...-+.||............. .+.. -..+.
T Consensus 159 ~~t~~~~~~~~~i~L~~~--~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 159 ADTTVISAKVQKIPLGTT--NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred CCccEEeccceEEecccc--CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 6633322211 11110 11123478899999999999998888888887764332111101 0110 12477
Q ss_pred EEEeccCCCCEEEEeeCCCcEEEEecC
Q 016032 166 GLHCNPIQPELLLSCGNDHFARIWDIR 192 (396)
Q Consensus 166 ~~~~~~~~~~~l~~~~~d~~i~~wd~~ 192 (396)
++.|++..+.+++.+.+++.+.-.|..
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecC
Confidence 889998777888888888888888765
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.01 E-value=1.6e-05 Score=43.40 Aligned_cols=38 Identities=26% Similarity=0.519 Sum_probs=33.7
Q ss_pred cceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEee
Q 016032 11 VNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWD 49 (396)
Q Consensus 11 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 49 (396)
.+...+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 3567788999999999999988 6899999999999996
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0034 Score=54.74 Aligned_cols=211 Identities=14% Similarity=0.135 Sum_probs=115.8
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee------------------------------------------Ee
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI------------------------------------------VY 59 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------------------------------------~~ 59 (396)
.|+++.|+++. .-|++|...|.|.||.....+... .+
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987 468999999999999875432110 01
Q ss_pred cCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeC-----CCC---CEE
Q 016032 60 GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN-----PEK---GVV 131 (396)
Q Consensus 60 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~---~~l 131 (396)
.....++|++++.+. -.+++.|..+|.+.|.|++....+..-..... .........+.++.|. .|+ -.+
T Consensus 82 ~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~-~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRES-FLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeecccccc-ccccccccCeeEEEEEEEecCCCcccceEE
Confidence 122467899999874 67999999999999999988777666444331 0111222336667664 233 578
Q ss_pred EEEecCCeEEEEeCCC-CCC--Cccceeee-cCCccEEEEEec-cC--------------------CCCEEEEeeCCCcE
Q 016032 132 LVADNFGFLYLVDART-NSR--SGEAILIH-RKGSKVVGLHCN-PI--------------------QPELLLSCGNDHFA 186 (396)
Q Consensus 132 ~~~~~~g~i~i~d~~~-~~~--~~~~~~~~-~~~~~i~~~~~~-~~--------------------~~~~l~~~~~d~~i 186 (396)
++|+..|.+.+|.+.- ... ........ .+.+++..+..- .. ...+++++ .+..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccce
Confidence 8999999999998752 111 11111111 233445444422 10 11244444 46789
Q ss_pred EEEecCCCCCCCccccCCCCCceeEEEEc-----CCCCEEEEEeCCCcEEEEEccccc
Q 016032 187 RIWDIRRLEAGSSLCDLPHKRVVNSAYFS-----PSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 187 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
+++...+.+..... +...-....+.+- ..+..|++-..+|.|++|.+-.-+
T Consensus 238 rv~~~~~~k~~~K~--~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 238 RVFKPPKSKGAHKS--FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp EEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred EEEeCCCCccccee--eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 99988654432222 2222223334442 356678888899999999986544
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.93 E-value=0.0019 Score=44.11 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=66.1
Q ss_pred eEEEEecC---CCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc
Q 016032 23 VTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 99 (396)
Q Consensus 23 v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 99 (396)
|++|++.. +|..-|+.|+.|..||+|+-.. .+..+. ....|.+++-.. ...|+.+..+|+|-+|+-. +.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~--e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~--~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT--ETDKVTSLCSLG--GGRFAYALANGTVGVYDRS--QR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe--cccceEEEEEcC--CCEEEEEecCCEEEEEeCc--ce
Confidence 56666644 5557899999999999998653 444442 557788888776 4678899999999999753 22
Q ss_pred cceeecCCCCCCCCCcceeeeEEEeC---CCC-CEEEEEecCCeEE
Q 016032 100 LSLMNVNPNGWHGPRTWRMLYGMDIN---PEK-GVVLVADNFGFLY 141 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~-~~l~~~~~~g~i~ 141 (396)
+..++.... +.++++. .+| ..|++|-.+|.|-
T Consensus 74 lWRiKSK~~----------~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQ----------VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeccCCC----------eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 223222111 4444432 233 4688888888764
No 355
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.00096 Score=58.10 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=110.0
Q ss_pred ceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEec-------CCcccceeEEEEec---CC----C
Q 016032 12 NCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG-------NIHSCIVNNIRFNP---TN----D 77 (396)
Q Consensus 12 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~---~~----~ 77 (396)
+...++...++|++++.|.-| ++|.|..+|.+.|.|++....+.... ......|+++.|.- .+ .
T Consensus 78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 345566678999999999887 79999999999999998766554421 12345688888862 11 2
Q ss_pred cEEEEEeCCCeEEEEECCC-CcccceeecCCCCCCCCCcceeeeEEE-eCC--------------------CCCEEEEEe
Q 016032 78 GTVYAASSDGTVSCTDLET-GLALSLMNVNPNGWHGPRTWRMLYGMD-INP--------------------EKGVVLVAD 135 (396)
Q Consensus 78 ~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~--------------------~~~~l~~~~ 135 (396)
-.+++|...|.+.+|.+.- ................. ..+..+. ++. .-+.+++..
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 4688899999999998752 11111111000000000 1122221 111 112345555
Q ss_pred cCCeEEEEeCCCCCCCccceeeecCCccEEEEEecc----CCCCEEEEeeCCCcEEEEecCCCCCCCccccC--CCCCce
Q 016032 136 NFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNP----IQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVV 209 (396)
Q Consensus 136 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~i 209 (396)
.+..++++.+.+.+...+.. ........+.+-+ ..+..|++-..+|.|++|.+...+....+... .....+
T Consensus 233 Se~~irv~~~~~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 67889999888765443322 2212233344421 14667888889999999999765544333321 122344
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 210 NSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 210 ~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
....++++|..++..+.. .+.++.+
T Consensus 310 ~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp TT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred cccEECCCCCEEEEeCcc-cEEEEEE
Confidence 566778899877766543 4444444
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.87 E-value=0.0076 Score=53.85 Aligned_cols=251 Identities=14% Similarity=0.098 Sum_probs=124.2
Q ss_pred ceeEEEEecCCCcEEEEE-eCCC----eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC--
Q 016032 66 IVNNIRFNPTNDGTVYAA-SSDG----TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-- 138 (396)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-- 138 (396)
.+....++|+ +++++.+ +..| .|+++|+.+++.+...-.. .....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----------~~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 125 SLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----------PKFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----------EESEEEEECTTSSEEEEEECSTTT
T ss_pred EeeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----------cccceEEEeCCCCEEEEEEeCccc
Confidence 4446789999 6666543 4444 5999999999765432110 1123489999988877764332
Q ss_pred ---------eEEEEeCCCCCCCccceeeecCCcc-EEEEEeccCCCCEEEEeeC---C-CcEEEEecCCCC--CCCcccc
Q 016032 139 ---------FLYLVDARTNSRSGEAILIHRKGSK-VVGLHCNPIQPELLLSCGN---D-HFARIWDIRRLE--AGSSLCD 202 (396)
Q Consensus 139 ---------~i~i~d~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~---d-~~i~~wd~~~~~--~~~~~~~ 202 (396)
.|+.|.+.+......++........ ...+..++ ++.+++..+. + ..+++.++.... .......
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 4788888775543223222222223 67888888 8887765432 2 357777876531 1111111
Q ss_pred CCCCCce-eEEEEcCCCCEEEEEeC---CCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCC--CCCceeeE
Q 016032 203 LPHKRVV-NSAYFSPSGSKILTTSQ---DNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKD--PSESLAVI 276 (396)
Q Consensus 203 ~~~~~~i-~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 276 (396)
......+ ..+... .+.+++.... .+.|...++........ . .....+.. ....+.+.
T Consensus 273 ~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~-~---------------~~l~~~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 273 SPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEW-W---------------TVLIPEDEDVSLEDVSLF 335 (414)
T ss_dssp EESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGE-E---------------EEEE--SSSEEEEEEEEE
T ss_pred eCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccc-e---------------eEEcCCCCceeEEEEEEE
Confidence 1222233 333333 3434443322 34555556554332100 0 01111111 01122223
Q ss_pred eeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEE-Ee-ec---CCcEEEEcCCCccee
Q 016032 277 GRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVL-AS-GS---SRSIFIWRPKEKSEL 346 (396)
Q Consensus 277 g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~s-g~---d~~i~iw~~~~~~~~ 346 (396)
+.+++....-.....|+++++..+.....+.......+..+ ...+++..+ ++ .+ -++++.||+.+++..
T Consensus 336 ~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~-~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 336 KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGV-SGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEE-ES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEecc-CCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 44444433344456799999984444444444433434433 334444332 22 33 388999999998743
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.016 Score=50.84 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=159.9
Q ss_pred EEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEe
Q 016032 45 VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI 124 (396)
Q Consensus 45 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 124 (396)
+.+++..+......+. -......+...|.+....++-.....+...+.............. .....++.
T Consensus 13 ~~v~~~~~~~~~~~~~--~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~---------~~p~~i~v 81 (381)
T COG3391 13 VSVINTGTNKVTAAIS--LGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG---------VYPAGVAV 81 (381)
T ss_pred eEEEeecccEEEEEee--cCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC---------ccccceee
Confidence 5666665554444442 112556677777722333443333345444443111111111100 11456778
Q ss_pred CCCCCEEEEE-ecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC---CCcEEEEecCCCCCCCcc
Q 016032 125 NPEKGVVLVA-DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSL 200 (396)
Q Consensus 125 ~~~~~~l~~~-~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~ 200 (396)
++.+..+... ..++.|.+.|............ +.....+++.| ++..+..+.. ++.+.+.|..+.......
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v----G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV----GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEeee----ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 8888755554 4568999999766554432222 22567899999 6655555444 688888888765543332
Q ss_pred ccCCCCCceeEEEEcCCCCEEEEEe-CCCcEEEEEcccccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeee
Q 016032 201 CDLPHKRVVNSAYFSPSGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRY 279 (396)
Q Consensus 201 ~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 279 (396)
.. ...+ ..++++|+|..+++.. .++.|.+.|........ ... .........+..+.++|+ |.+
T Consensus 157 ~v--G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~---~~~~~~~~~P~~i~v~~~---------g~~ 220 (381)
T COG3391 157 PV--GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV---GSLVGVGTGPAGIAVDPD---------GNR 220 (381)
T ss_pred ec--CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc---ccccccCCCCceEEECCC---------CCE
Confidence 21 2223 8899999999776665 68899999976655432 110 011223333456778887 443
Q ss_pred eeeecccccccceEEEEcCccchhhh-hcCCCCCCCcceeeeccCCcEEEeec--CCcEEEEcCCCcceeeecccc
Q 016032 280 ISENYNGAALHPIDFIDITTGQLVAE-VMDPNITTISPVNKLHPRDDVLASGS--SRSIFIWRPKEKSELVEQKEE 352 (396)
Q Consensus 280 ~~~~~~g~~d~~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~sg~--d~~i~iw~~~~~~~~~~~~~~ 352 (396)
+.....++.++.+...|..++..... +..... ....+ ..+|+|.++.+.. .+.+.+-|..+..........
T Consensus 221 ~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v-~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 221 VYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV-AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred EEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce-eECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 33222344467899999988877665 222222 33344 7999999998875 588999998887776665443
No 358
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.86 E-value=0.019 Score=51.36 Aligned_cols=202 Identities=10% Similarity=0.093 Sum_probs=104.5
Q ss_pred CeEEEEecCCCCcEEEEEeCCCc----EEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC-----------
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQ----VGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD----------- 86 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~----i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d----------- 86 (396)
.+..++++|+++.++++-+..|. +++.|+.+++.+.... .......+.|.++ +..|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d-~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDD-GKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTT-SSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCC-CCEEEEEEeCcccccccCCCC
Confidence 34467899999655556555554 9999999986655432 2222234999999 5555444322
Q ss_pred CeEEEEECCCCccc--ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC----CeEEEEeCCCCC-CCccceeeec
Q 016032 87 GTVSCTDLETGLAL--SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF----GFLYLVDARTNS-RSGEAILIHR 159 (396)
Q Consensus 87 g~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----g~i~i~d~~~~~-~~~~~~~~~~ 159 (396)
..|..|.+.+.... ..+...... .....+..++++++++..... ..+++.++.... ..........
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~-------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEP-------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCT-------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cEEEEEECCCChHhCeeEEeecCCC-------cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 23788888776554 233322221 114578889999998875433 357888887741 1111112222
Q ss_pred CCccEEEEEeccCCCCEEEEee---CCCcEEEEecCCCCCCCcc-ccCCCCC--ceeEEEEcCCCCEEE-EEeCCC--cE
Q 016032 160 KGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAGSSL-CDLPHKR--VVNSAYFSPSGSKIL-TTSQDN--RL 230 (396)
Q Consensus 160 ~~~~i~~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~-~~~~~~~--~i~~~~~~~~~~~l~-~~~~d~--~i 230 (396)
....+....-+. .+.+++... ..+.|...++......... ..+.+.. .+..+.. .+.+|+ ....++ .|
T Consensus 275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRL 351 (414)
T ss_dssp SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEE
T ss_pred CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEE
Confidence 211233222222 344444332 2456777777654431111 1223444 3444444 344444 444444 58
Q ss_pred EEEEcc
Q 016032 231 RIWDSI 236 (396)
Q Consensus 231 ~iwd~~ 236 (396)
+++++.
T Consensus 352 ~v~~~~ 357 (414)
T PF02897_consen 352 RVYDLD 357 (414)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 888887
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.84 E-value=0.0012 Score=61.92 Aligned_cols=142 Identities=12% Similarity=0.126 Sum_probs=89.5
Q ss_pred eCCCcEEEeecccceeeeEecCCcccceeEEEEec----CCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCc
Q 016032 40 DKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP----TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRT 115 (396)
Q Consensus 40 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 115 (396)
.....++-.|++.++.+.........+|..++-.. -....-+.|-.+..|..||.+-.... ...... .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~~~---k~Y~~ 576 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDSQS---KQYSS 576 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeeccc---ccccc
Confidence 34567888899998888887533333455554221 11344566777889999999864311 111111 11122
Q ss_pred ceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEec
Q 016032 116 WRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 191 (396)
Q Consensus 116 ~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~ 191 (396)
.....|++-+.+| +||+|+.+|.|++||- .+..... .+..-+.+|.+|..+. +|.++++.+. ..|.|++.
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT--~lp~lG~pI~~iDvt~-DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKT--ALPGLGDPIIGIDVTA-DGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhh--cCCCCCCCeeEEEecC-CCcEEEEeec-ceEEEEEE
Confidence 2236677666554 6999999999999994 3332222 2345567999999999 9998887764 56777775
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00011 Score=64.76 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=74.3
Q ss_pred ccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceee-eEEEeCCCCCEEEEEecCCeEEE
Q 016032 64 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML-YGMDINPEKGVVLVADNFGFLYL 142 (396)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~g~i~i 142 (396)
...|.-+.|+|. ...+|.+..+|.|.+..+. .+.+..+..+... + .+++|.|||+.|++|-.||+|++
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~---------v~~sL~W~~DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGEN---------VTASLCWRPDGKLLAVGFKDGTIRL 88 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCc---------cceeeeecCCCCEEEEEecCCeEEE
Confidence 356788999999 9999999999999999988 6666666544433 4 49999999999999999999999
Q ss_pred EeCCCCCCCccceeeecCCccEEEEEecc
Q 016032 143 VDARTNSRSGEAILIHRKGSKVVGLHCNP 171 (396)
Q Consensus 143 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~ 171 (396)
.|+.++..+..... .....|.++.|.+
T Consensus 89 ~Dve~~~~l~~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLF--SVETDISKGIWDR 115 (665)
T ss_pred EEccCCCceecccc--ccccchheeeccc
Confidence 99999876544211 2223577777764
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=4.2e-05 Score=58.73 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=68.4
Q ss_pred EEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccccccc
Q 016032 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 256 (396)
Q Consensus 177 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
+..-+.++.|+-++++..+.... ...-+...-. .-.-+..+++|+.+|.|.+|........ ...+...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r-se~~~~e~~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~--------~d~~~s~ 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR-SERFIDEGQR---VVTASAKLMVGTSDGAVYVFNWNLEGAH--------SDRVCSG 100 (238)
T ss_pred hccccCCcccccchhhhhhhhhh-hhhhhhccee---ecccCceEEeecccceEEEecCCccchH--------HHhhhcc
Confidence 44445678888888764322111 1111111111 1123567899999999999987621110 0000000
Q ss_pred CCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEee--c-CC
Q 016032 257 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASG--S-SR 333 (396)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg--~-d~ 333 (396)
..++.+.+ |... .+.+.. ++..++.|+.|++.-.+.+.....|....+... .....+++|+.+ + |.
T Consensus 101 ~e~i~~~I-p~~~------~~~~~c---~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~-ivv~sd~~i~~a~~S~d~ 169 (238)
T KOG2444|consen 101 EESIDLGI-PNGR------DSSLGC---VGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL-IVVGSDEFLKIADTSHDR 169 (238)
T ss_pred cccceecc-cccc------ccceeE---EeccCCceeeeccccCceeeeeccccCCCccee-EEecCCceEEeeccccch
Confidence 00001111 1100 122333 688999999999988877766555543333322 233334444443 3 45
Q ss_pred cEEEEcCC
Q 016032 334 SIFIWRPK 341 (396)
Q Consensus 334 ~i~iw~~~ 341 (396)
.++.|++.
T Consensus 170 ~~k~W~ve 177 (238)
T KOG2444|consen 170 VLKKWNVE 177 (238)
T ss_pred hhhhcchh
Confidence 55555543
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00017 Score=63.63 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=69.0
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCccccee-EEEEecCCCcEEEEEeCCCeEEEEECCCC
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVN-NIRFNPTNDGTVYAASSDGTVSCTDLETG 97 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 97 (396)
-.-.|.-+.|+|.- .++|++..+|.|.+..+. .+.+..+ +-|+..++ +++|.|+ ++.|+.|-.||+|++.|++++
T Consensus 19 l~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC-CCEEEEEecCCeEEEEEccCC
Confidence 34568889999998 589999999999999988 5566666 44667777 9999999 999999999999999999999
Q ss_pred ccccee
Q 016032 98 LALSLM 103 (396)
Q Consensus 98 ~~~~~~ 103 (396)
..+...
T Consensus 95 ~~l~~~ 100 (665)
T KOG4640|consen 95 GRLVSF 100 (665)
T ss_pred Cceecc
Confidence 887664
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.79 E-value=0.0068 Score=51.98 Aligned_cols=179 Identities=11% Similarity=0.024 Sum_probs=104.3
Q ss_pred cEEEeecccceeeeEecCCcccceeEEEEec---C---CCcEEEEEeC----------CCeEEEEECCCC----ccccee
Q 016032 44 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNP---T---NDGTVYAASS----------DGTVSCTDLETG----LALSLM 103 (396)
Q Consensus 44 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~---~~~~l~s~~~----------dg~v~iwd~~~~----~~~~~~ 103 (396)
.|++.|..+.+.+..+.-.....+.+++... + ...+|+.|.. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5777777766555444322344455544322 1 1467777643 289999999884 111111
Q ss_pred -ecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC
Q 016032 104 -NVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN 182 (396)
Q Consensus 104 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 182 (396)
.... ...|++++-- +..|+++. .+.|.+|++........ .........+.++... ++++++|..
T Consensus 83 ~~~~~--------~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~-~~~~~~~~~i~sl~~~---~~~I~vgD~ 147 (321)
T PF03178_consen 83 HSTEV--------KGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLK-KAFYDSPFYITSLSVF---KNYILVGDA 147 (321)
T ss_dssp EEEEE--------SS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEE-EEEE-BSSSEEEEEEE---TTEEEEEES
T ss_pred EEEee--------cCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchh-hheecceEEEEEEecc---ccEEEEEEc
Confidence 1110 1227777655 34444443 48999999988762211 1223333367777775 468999988
Q ss_pred CCcEEEEecCCCCC-CCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 183 DHFARIWDIRRLEA-GSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 183 d~~i~~wd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
...+.++..+.... ...+..-.....++++.|-+++..++++..+|.+.++....
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 88888886543111 11222113456788999987667999999999999998863
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0024 Score=55.58 Aligned_cols=143 Identities=14% Similarity=0.178 Sum_probs=94.4
Q ss_pred EEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCC-------CEEEEEecCCeEEEEeCCCCCCC
Q 016032 79 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-------GVVLVADNFGFLYLVDARTNSRS 151 (396)
Q Consensus 79 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~~g~i~i~d~~~~~~~ 151 (396)
+|.++.....|+-.|++.|+.+..+..... |.-+.+.|+. ..-+.|-.+..|.-||++-....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC----------cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 344556667788899999999998877655 4445555543 23456777889999999854331
Q ss_pred -ccceeee--cCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCC
Q 016032 152 -GEAILIH--RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDN 228 (396)
Q Consensus 152 -~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 228 (396)
......+ .......|++-. ...+|++|+.+|.|++||--.......+ .+...+|..+..+.+|++|++.+ +.
T Consensus 418 kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAl--PgLG~~I~hVdvtadGKwil~Tc-~t 492 (644)
T KOG2395|consen 418 KLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTAL--PGLGDAIKHVDVTADGKWILATC-KT 492 (644)
T ss_pred eeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcc--cccCCceeeEEeeccCcEEEEec-cc
Confidence 1111111 112234455544 4568999999999999996322222222 35667899999999999987665 56
Q ss_pred cEEEEEcc
Q 016032 229 RLRIWDSI 236 (396)
Q Consensus 229 ~i~iwd~~ 236 (396)
.+.+.++.
T Consensus 493 yLlLi~t~ 500 (644)
T KOG2395|consen 493 YLLLIDTL 500 (644)
T ss_pred EEEEEEEe
Confidence 77777765
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.72 E-value=0.007 Score=53.64 Aligned_cols=143 Identities=12% Similarity=0.078 Sum_probs=77.4
Q ss_pred ccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEE
Q 016032 64 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 143 (396)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~ 143 (396)
......+.++|+ +++++.++ +|.-.++.....+.... .....++|.+ .+.+|+-..+..|.++
T Consensus 32 ~~~p~~ls~npn-gr~v~V~g-~geY~iyt~~~~r~k~~--------------G~g~~~vw~~-~n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 32 EIYPQSLSHNPN-GRFVLVCG-DGEYEIYTALAWRNKAF--------------GSGLSFVWSS-RNRYAVLESSSTIKIY 94 (443)
T ss_dssp SS--SEEEE-TT-SSEEEEEE-TTEEEEEETTTTEEEEE--------------EE-SEEEE-T-SSEEEEE-TTS-EEEE
T ss_pred CcCCeeEEECCC-CCEEEEEc-CCEEEEEEccCCccccc--------------CceeEEEEec-CccEEEEECCCeEEEE
Confidence 345788999998 88888855 77788887433332221 2256678988 4457777768889996
Q ss_pred eCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEE
Q 016032 144 DARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILT 223 (396)
Q Consensus 144 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 223 (396)
.--........ ... ..+..+-. |.+|...+. +.|.+||+.+.+. +...... +|..+.|++++.+++.
T Consensus 95 kn~~~~~~k~i-~~~---~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~---i~~i~v~-~vk~V~Ws~~g~~val 161 (443)
T PF04053_consen 95 KNFKNEVVKSI-KLP---FSVEKIFG----GNLLGVKSS-DFICFYDWETGKL---IRRIDVS-AVKYVIWSDDGELVAL 161 (443)
T ss_dssp ETTEE-TT------S---S-EEEEE-----SSSEEEEET-TEEEEE-TTT--E---EEEESS--E-EEEEE-TTSSEEEE
T ss_pred EcCccccceEE-cCC---cccceEEc----CcEEEEECC-CCEEEEEhhHcce---eeEEecC-CCcEEEEECCCCEEEE
Confidence 33222221111 111 12333322 566666654 4899999976444 4433333 4899999999999998
Q ss_pred EeCCCcEEEEEccc
Q 016032 224 TSQDNRLRIWDSIF 237 (396)
Q Consensus 224 ~~~d~~i~iwd~~~ 237 (396)
.+.+ .+.|++...
T Consensus 162 ~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 162 VTKD-SIYILKYNL 174 (443)
T ss_dssp E-S--SEEEEEE-H
T ss_pred EeCC-eEEEEEecc
Confidence 8855 788877653
No 366
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.0036 Score=55.18 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=94.0
Q ss_pred cccceeEEEEecCCCcEEEEE---eCC-CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEE-ecC
Q 016032 63 HSCIVNNIRFNPTNDGTVYAA---SSD-GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA-DNF 137 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~---~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~ 137 (396)
-...+..-+|+|+ +..++-. ... ..+.++++.+++.......... -..-+|+|+|+.|+.. ..+
T Consensus 191 ~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~----------~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 191 SGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN----------NGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred cCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeeccCCc----------cCCccCCCCCCEEEEEECCC
Confidence 4456777889998 5554333 222 4699999999887666653322 3345699999888766 444
Q ss_pred C--eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee-CCCc--EEEEecCCCCCCCccccCCCCCceeEE
Q 016032 138 G--FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG-NDHF--ARIWDIRRLEAGSSLCDLPHKRVVNSA 212 (396)
Q Consensus 138 g--~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~--i~~wd~~~~~~~~~~~~~~~~~~i~~~ 212 (396)
| .|+++|+....... .....+.-..-.|+| ++..++-.+ ..|. |.+++...... ..+. ..- ..-..-
T Consensus 260 g~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT-~~~-~~~~~p 331 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT-FSG-GGNSNP 331 (425)
T ss_pred CCccEEEEcCCCCccee----cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce-eEee-ccC-CCCcCc
Confidence 5 67778887765322 222222334678899 888776655 4454 55555543332 1221 111 111267
Q ss_pred EEcCCCCEEEEEeCC-Cc--EEEEEccccc
Q 016032 213 YFSPSGSKILTTSQD-NR--LRIWDSIFGN 239 (396)
Q Consensus 213 ~~~~~~~~l~~~~~d-~~--i~iwd~~~~~ 239 (396)
.|+|+|++|+..+.. |. |.+.|+.++.
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 899999999877743 43 5555554443
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.68 E-value=0.015 Score=53.81 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=101.9
Q ss_pred CCeEEEEecCCCCcEEEEEe-----CCC--cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC-CeEEEE
Q 016032 21 RRVTCLEFHPTNNHILLSGD-----KKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-GTVSCT 92 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-g~v~iw 92 (396)
..+.+.+++|+|.+++++.. .|. .|.+++..... ..+..+ .....-.|+|+ +..|++.... ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~PsWspD-G~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPSWSLD-ADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCceECCC-CCceEEEecCcceEEEe
Confidence 35778999999976555542 243 45555543222 222222 24788999999 7777766533 223333
Q ss_pred ECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEE---EeCCCCC-CCccceee-ecCCccEEEE
Q 016032 93 DLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL---VDARTNS-RSGEAILI-HRKGSKVVGL 167 (396)
Q Consensus 93 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i---~d~~~~~-~~~~~~~~-~~~~~~i~~~ 167 (396)
+-.....+..+......... .....|..+.|+|||..++... +|.|++ -....+. .+...... ......+..+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred ccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 22211122212211111000 1112399999999999988876 477777 3333332 11111111 2222236889
Q ss_pred EeccCCCCEEEEeeCCCcEEEEecCCCCCCCcc-ccCCCCCceeEEEEcCCCCEEEEEeCCCcE
Q 016032 168 HCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL-CDLPHKRVVNSAYFSPSGSKILTTSQDNRL 230 (396)
Q Consensus 168 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 230 (396)
.|.+ ++.++ ++..++.-.+|.+.-....... ..-....++..++-+++ .++....++.+
T Consensus 503 ~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred eEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9998 66644 5555555555554322221111 11123566777777763 45555656633
No 368
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.61 E-value=0.0085 Score=50.07 Aligned_cols=204 Identities=12% Similarity=0.119 Sum_probs=109.3
Q ss_pred EEEecCCCCcEEEEEe--CCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECC-CCcccc
Q 016032 25 CLEFHPTNNHILLSGD--KKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE-TGLALS 101 (396)
Q Consensus 25 ~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~ 101 (396)
.++++.++ ++++... -..+|.|-|+...+....+. -.+ +.. ..|.+...|.+-+.||.+.-..+. .|+...
T Consensus 99 ~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG-C~~--iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 99 MFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEID--TPG-CWL--IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEE--GTS-EEE--EEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeec--CCC-EEE--EEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 35677777 4444432 23457777777766655553 111 222 223334568888889999999988 455432
Q ss_pred eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccc-eee--------ecCCccEEEEEeccC
Q 016032 102 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEA-ILI--------HRKGSKVVGLHCNPI 172 (396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~-~~~--------~~~~~~i~~~~~~~~ 172 (396)
... ..+..... ..+..-++...+..++..+.+|.|+-.|+......... ... ....+...-+++++
T Consensus 173 ~~t---~~F~~~~d-p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~- 247 (342)
T PF06433_consen 173 KST---KVFDPDDD-PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA- 247 (342)
T ss_dssp EEE---EESSTTTS--B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-
T ss_pred eec---cccCCCCc-ccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-
Confidence 211 11111111 11223344455666777888899998888765421110 000 00011233467776
Q ss_pred CCCEEEEeeCC----------CcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCC-EEEEE-eCCCcEEEEEcccccc
Q 016032 173 QPELLLSCGND----------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS-KILTT-SQDNRLRIWDSIFGNL 240 (396)
Q Consensus 173 ~~~~l~~~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~d~~i~iwd~~~~~~ 240 (396)
..+.|++.... ..|.++|+.+.+. +..+.-..++.+|+.+.+.+ +|++. ..++.|.+||..+|+.
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr---v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR---VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE---EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeE---EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 33333332221 1478888876444 33333445688999998665 55444 4578999999999987
Q ss_pred cC
Q 016032 241 DS 242 (396)
Q Consensus 241 ~~ 242 (396)
+.
T Consensus 325 ~~ 326 (342)
T PF06433_consen 325 VR 326 (342)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 369
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.018 Score=46.63 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=106.6
Q ss_pred CcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEE
Q 016032 62 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 141 (396)
Q Consensus 62 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 141 (396)
+-...+.++.|+|+ .+.|++......-.++=...|+.+..+....-. ....+.+..++.+.++--.+..+.
T Consensus 83 g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 83 GETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccC--------ChhHeEEecCCEEEEEehhcceEE
Confidence 34455999999999 778877777777777777788988887654321 155677888888888877888888
Q ss_pred EEeCCCCCCCccce----e---eecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CC-------C
Q 016032 142 LVDARTNSRSGEAI----L---IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PH-------K 206 (396)
Q Consensus 142 i~d~~~~~~~~~~~----~---~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~-------~ 206 (396)
++.+.......... . ........-.++|.| ....|+.+-+..-+.||.+......-..... .+ -
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 87766542221110 1 111133577899999 6666777777777777776532211111110 11 1
Q ss_pred CceeEEEEcC-CCCEEEEEeCCCcEEEEEcc
Q 016032 207 RVVNSAYFSP-SGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 207 ~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 236 (396)
..|.++.|++ .+.+|+.+.+++.+.-.|..
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecC
Confidence 3477888887 56667777777777777765
No 370
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.51 E-value=0.05 Score=47.40 Aligned_cols=205 Identities=14% Similarity=0.085 Sum_probs=101.7
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCc----------------ccceeEEEEecCCCcEEEEE
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIH----------------SCIVNNIRFNPTNDGTVYAA 83 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~s~ 83 (396)
...+....|+|+|. .+|-.. ++.|.+++..++........+- -..-..+-|+|+ +++|+..
T Consensus 42 ~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-SKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT-SSEEEEE
T ss_pred ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCC-CCEEEEE
Confidence 67789999999994 555553 6789999987775544433220 112356889999 7777665
Q ss_pred eCC-Ce-----------------------------------EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC
Q 016032 84 SSD-GT-----------------------------------VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE 127 (396)
Q Consensus 84 ~~d-g~-----------------------------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 127 (396)
..| .. +.++++.+++... +.... .. ......+..+.|.++
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~-~~~~~-~~--~~~~~yl~~v~W~~d 194 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTE-LDPPN-SL--NPQDYYLTRVGWSPD 194 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCE-E---H-HH--HTSSEEEEEEEEEET
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEE-eeecc-cc--CCCccCcccceecCC
Confidence 332 22 2233433333211 10000 00 011234788899999
Q ss_pred CCEEEEE--ecC---CeEEEEeCCCCCCCccceeeecCCccE---EEEEec-cCCCCEEEEeeCCCcEEEE--ecCCCCC
Q 016032 128 KGVVLVA--DNF---GFLYLVDARTNSRSGEAILIHRKGSKV---VGLHCN-PIQPELLLSCGNDHFARIW--DIRRLEA 196 (396)
Q Consensus 128 ~~~l~~~--~~~---g~i~i~d~~~~~~~~~~~~~~~~~~~i---~~~~~~-~~~~~~l~~~~~d~~i~~w--d~~~~~~ 196 (396)
+..|++. .++ ..+.++|..++...... .......+ ....+. +....++.....+|.-.|| +......
T Consensus 195 ~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~--~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~ 272 (353)
T PF00930_consen 195 GKRLWVQWLNRDQNRLDLVLCDASTGETRVVL--EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP 272 (353)
T ss_dssp TEEEEEEEEETTSTEEEEEEEEECTTTCEEEE--EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE
T ss_pred CcEEEEEEcccCCCEEEEEEEECCCCceeEEE--EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce
Confidence 8844443 222 25667777664432211 11111121 234443 5355566666677755554 4433221
Q ss_pred CCccccCCCCCcee-EEEEcCCCCEEE-EEeCC--C--cEEEEEcc
Q 016032 197 GSSLCDLPHKRVVN-SAYFSPSGSKIL-TTSQD--N--RLRIWDSI 236 (396)
Q Consensus 197 ~~~~~~~~~~~~i~-~~~~~~~~~~l~-~~~~d--~--~i~iwd~~ 236 (396)
..+ ....-.|. -+.++++++.|+ ++..+ . .|..-++.
T Consensus 273 -~~l--T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 273 -RQL--TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp -EES--S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred -ecc--ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 111 12344564 477888766654 55542 2 34444554
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.51 E-value=0.014 Score=51.88 Aligned_cols=184 Identities=11% Similarity=0.051 Sum_probs=93.1
Q ss_pred eeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC
Q 016032 15 VIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL 94 (396)
Q Consensus 15 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 94 (396)
.+-...-....+.++|+| ++++. +.||.-.|+........ ..+.-...+|.+. +.+++-...++|.++.-
T Consensus 27 ~lg~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r~k------~~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWRNK------AFGSGLSFVWSSR--NRYAVLESSSTIKIYKN 96 (443)
T ss_dssp EEEE-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTEEE------EEEE-SEEEE-TS--SEEEEE-TTS-EEEEET
T ss_pred cCCCCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCccc------ccCceeEEEEecC--ccEEEEECCCeEEEEEc
Confidence 333445567899999999 56666 44788888874433222 2244567889885 45666666888999743
Q ss_pred CCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCC
Q 016032 95 ETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQP 174 (396)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 174 (396)
-+......+..+.. +..+-. |..|...+. +.|.+||..+++.+.+. ... +|..+.|++ ++
T Consensus 97 ~~~~~~k~i~~~~~----------~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i----~v~-~vk~V~Ws~-~g 156 (443)
T PF04053_consen 97 FKNEVVKSIKLPFS----------VEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRI----DVS-AVKYVIWSD-DG 156 (443)
T ss_dssp TEE-TT-----SS-----------EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEE----SS--E-EEEEE-T-TS
T ss_pred CccccceEEcCCcc----------cceEEc---CcEEEEECC-CCEEEEEhhHcceeeEE----ecC-CCcEEEEEC-CC
Confidence 33333334433211 222222 666666544 48999999997655432 121 488999999 88
Q ss_pred CEEEEeeCCCcEEEEecCCC------C--CCCccccCCC-CCceeEEEEcCCCCEEEEEeCCCcEEE
Q 016032 175 ELLLSCGNDHFARIWDIRRL------E--AGSSLCDLPH-KRVVNSAYFSPSGSKILTTSQDNRLRI 232 (396)
Q Consensus 175 ~~l~~~~~d~~i~~wd~~~~------~--~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i 232 (396)
.+++..+.+ .+.+++.... + ....+..... ...|.+.+|..+ .++-.+.. .|+.
T Consensus 157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 988888754 7778775421 0 0002222222 567888888655 44444333 6655
No 372
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.09 Score=48.39 Aligned_cols=227 Identities=10% Similarity=0.027 Sum_probs=107.4
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
..++..++..+|..-.-+. +.--.|+|+++......... -.|. .+-.+.|+.+ ..|+....+|++++|++...
T Consensus 42 p~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL~~~~-w~~~-~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge- 114 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLLGRIL-WKHG-ELIGMGWSDD--EELICVQKDGTVHVYGLLGE- 114 (829)
T ss_pred ccCCceEEEeccccccccc--ccceeEEEEeccccchHHHH-hcCC-CeeeecccCC--ceEEEEeccceEEEeecchh-
Confidence 3445555566653211111 23346888887654332222 2243 7889999975 67778889999999998643
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCC--CCE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ--PEL 176 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~ 176 (396)
.+......... .. ..|..+.+..+| +++-..+|.+.+..-.......+.........+..|-...+.. ...
T Consensus 115 ~ie~~svg~e~-~~----~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ 187 (829)
T KOG2280|consen 115 FIESNSVGFES-QM----SDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI 187 (829)
T ss_pred hhccccccccc-cc----CceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCccee
Confidence 32221111010 00 114444444455 3333444555443322211111111111111111222222201 111
Q ss_pred EEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcccccccCCCcceeeccccccc
Q 016032 177 LLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 256 (396)
Q Consensus 177 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
++-....--..++.... ...+..........+..+..||+.++|+.-...|.|.+-+.+..+.. .......+
T Consensus 188 ll~v~~~v~~~~~q~~~-~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l-------ce~~~~~~ 259 (829)
T KOG2280|consen 188 LLDVDVAVGLHICQVEE-SRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL-------CEFNCTDH 259 (829)
T ss_pred EEeechhhhhcccceec-ccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh-------hccCCCCC
Confidence 11111000001111111 11111111112356888999999999999999999999988765543 23333344
Q ss_pred CCceeEEeCCC
Q 016032 257 LTPFRAEWDPK 267 (396)
Q Consensus 257 ~~~~~~~~~~~ 267 (396)
..+-.++|.-+
T Consensus 260 ~~p~qm~Wcgn 270 (829)
T KOG2280|consen 260 DPPKQMAWCGN 270 (829)
T ss_pred CchHhceeecC
Confidence 44445666554
No 373
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0083 Score=57.26 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=80.0
Q ss_pred eeEEEeCCCCCEEEEEe--cCCeEEEEeCCCCCCCccc--------eeeecCCccEEEEEeccCCCCEEEEeeCCCcEEE
Q 016032 119 LYGMDINPEKGVVLVAD--NFGFLYLVDARTNSRSGEA--------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 188 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~--~~g~i~i~d~~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~ 188 (396)
+..+...+|+...++.. .+-.|..||++.-...... ...........++.|+|.-....+.+..|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 55666777776655543 3337999999764322110 1122233457788999966667788888999999
Q ss_pred EecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 016032 189 WDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 189 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
..+.. .......+......++++|+|.|+.++.|-..|++.-|...
T Consensus 183 ~~~~~--~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 183 KSTKQ--LAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhh--hhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 88753 22233334556778999999999999999999999988764
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00062 Score=36.72 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=29.0
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
..|...|.++.|.+. ..++++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 458889999999998 78999999999999996
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.34 E-value=0.023 Score=38.99 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=67.2
Q ss_pred eeEEEEec---CCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEE
Q 016032 67 VNNIRFNP---TNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLV 143 (396)
Q Consensus 67 v~~~~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~ 143 (396)
|++|++.. ++.+.|++|+.|..|++|+-+ +.+..+..... +.++.-... ..++.+..+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~----------v~~L~~~~~-~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDK----------VTSLCSLGG-GRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccc----------eEEEEEcCC-CEEEEEecCCEEEEE
Confidence 56666554 335789999999999999744 45555543322 777776665 669999999999999
Q ss_pred eCCCCCCCccceeeecCCccEEEEEeccCCC---CEEEEeeCCCcEE
Q 016032 144 DARTNSRSGEAILIHRKGSKVVGLHCNPIQP---ELLLSCGNDHFAR 187 (396)
Q Consensus 144 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d~~i~ 187 (396)
+-... ...... ...+.++++...++ .-|++|-.+|.|-
T Consensus 69 ~~~~R-----lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DRSQR-----LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eCcce-----eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 86432 111122 22477777665332 2688888888774
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.00058 Score=52.70 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=75.9
Q ss_pred EEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeE-EEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceee
Q 016032 79 TVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYG-MDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILI 157 (396)
Q Consensus 79 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~ 157 (396)
.+..-+.+|.|+-++++..+....-. .+ +.+ .....-+..+++|+.+|.|++|..............
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse----~~--------~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s 99 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSE----RF--------IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS 99 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhh----hh--------hhcceeecccCceEEeecccceEEEecCCccchHHHhhhc
Confidence 34445668888887776543221110 00 111 112223567999999999999988743222222111
Q ss_pred ecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCC-CceeEEEEcCCCCEEEEE--eCCCcEEEE
Q 016032 158 HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHK-RVVNSAYFSPSGSKILTT--SQDNRLRIW 233 (396)
Q Consensus 158 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~l~~~--~~d~~i~iw 233 (396)
... .|.++--.-.++.+..+++.+|.|+.|++.- .+.+... +|. .++..+..+..+..++.+ |.|..++.|
T Consensus 100 ~~e--~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p---~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W 174 (238)
T KOG2444|consen 100 GEE--SIDLGIPNGRDSSLGCVGAQDGRIRACNIKP---NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKW 174 (238)
T ss_pred ccc--cceeccccccccceeEEeccCCceeeecccc---CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhc
Confidence 111 2333222222556888999999999999853 2222222 344 344444444455555555 556666666
Q ss_pred Eccc
Q 016032 234 DSIF 237 (396)
Q Consensus 234 d~~~ 237 (396)
++..
T Consensus 175 ~ve~ 178 (238)
T KOG2444|consen 175 NVEK 178 (238)
T ss_pred chhh
Confidence 6653
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.094 Score=44.19 Aligned_cols=225 Identities=14% Similarity=0.097 Sum_probs=110.5
Q ss_pred EEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCC
Q 016032 70 IRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNS 149 (396)
Q Consensus 70 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~ 149 (396)
..|.++.+.++.+--..+.|.-|+..+++.. .+..+.. +.++..-..+..|+++.. .+.+++...+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~----------~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~ 96 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGG----------FSSGALIDAGGRLIACEH--GVRLLDPDTGG 96 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCC----------cccceeecCCCeEEEEcc--ccEEEeccCCc
Confidence 3466763445666666788888888766442 2222211 333333333444444332 34445544333
Q ss_pred CCcccee--eecCCccEEEEEeccCCCCEEEEeeC-----------CCcEEEEecCCCCCCCccccCCCCCceeEEEEcC
Q 016032 150 RSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGN-----------DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 216 (396)
Q Consensus 150 ~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (396)
....... ........+.+...| ++.+.++... -|.|+.+|. .......+. .+-...+.|+|||
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~--~~~~~~NGla~Sp 172 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD--DDLTIPNGLAFSP 172 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec--CcEEecCceEECC
Confidence 2111100 111123466778888 7776665443 133444443 111111111 2344567899999
Q ss_pred CCCEEEEEeC-CCcEEEEEccc--ccccCCCcceeecccccccCCceeEEeCCCCCCCceeeEeeeeeeecccccc-cce
Q 016032 217 SGSKILTTSQ-DNRLRIWDSIF--GNLDSPSREIVHSHDFNRHLTPFRAEWDPKDPSESLAVIGRYISENYNGAAL-HPI 292 (396)
Q Consensus 217 ~~~~l~~~~~-d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d-~~i 292 (396)
+++.|+.+.. .+.|.-|++.. +..... .......... -.|+ ..++-..|.+-. ++... +.|
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~~~~~~---------G~PD--G~~vDadG~lw~---~a~~~g~~v 237 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVDFDEEP---------GLPD--GMAVDADGNLWV---AAVWGGGRV 237 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEEccCCC---------CCCC--ceEEeCCCCEEE---ecccCCceE
Confidence 9988887765 47788887763 221111 0000000000 0111 122222355553 22333 379
Q ss_pred EEEEcCccchhhhhcCCCCCCCcceeee-ccCCcEEEe
Q 016032 293 DFIDITTGQLVAEVMDPNITTISPVNKL-HPRDDVLAS 329 (396)
Q Consensus 293 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~s 329 (396)
.+|+.. |+++..+..+. ..+.++ +| .|+.+.|..
T Consensus 238 ~~~~pd-G~l~~~i~lP~-~~~t~~-~FgG~~~~~L~i 272 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPV-KRPTNP-AFGGPDLNTLYI 272 (307)
T ss_pred EEECCC-CcEEEEEECCC-CCCccc-eEeCCCcCEEEE
Confidence 999987 88888887775 444444 34 455554444
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.24 E-value=0.096 Score=44.15 Aligned_cols=201 Identities=15% Similarity=0.155 Sum_probs=113.2
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceee
Q 016032 25 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMN 104 (396)
Q Consensus 25 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 104 (396)
.-.|.++...++.+--..+.|.-|+..++...... +...+.++..... +..|+++... +.+++.+++.....+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~-~g~Lv~~~~g--~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDA-GGRLIACEHG--VRLLDPDTGGKITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecC-CCeEEEEccc--cEEEeccCCceeEEec
Confidence 34677777667777777888999998866544443 3333455554444 5566665433 6667776655533332
Q ss_pred cCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-----------CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCC
Q 016032 105 VNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----------FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQ 173 (396)
Q Consensus 105 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 173 (396)
........ ...+.....|+|.+.+.... -|.++.+|.. +... . ....+-..-+.|+|+| +
T Consensus 103 ~~~~~~~~----~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~-~--l~~~~~~~~NGla~Sp-D 173 (307)
T COG3386 103 EPEDGLPL----NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVV-R--LLDDDLTIPNGLAFSP-D 173 (307)
T ss_pred cccCCCCc----CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEE-E--eecCcEEecCceEECC-C
Confidence 22211111 23667788888887665443 1345555542 2111 1 1111122467899999 8
Q ss_pred CCEEEEe-eCCCcEEEEecCC--CCCCCc--cccC-CCCCceeEEEEcCCCCEEEEEeCCC-cEEEEEccccccc
Q 016032 174 PELLLSC-GNDHFARIWDIRR--LEAGSS--LCDL-PHKRVVNSAYFSPSGSKILTTSQDN-RLRIWDSIFGNLD 241 (396)
Q Consensus 174 ~~~l~~~-~~d~~i~~wd~~~--~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~ 241 (396)
+..|+.+ +..+.|.-|++.. ...... .... ...+..-.++...+|.+.+++..+| .|.+|+.. |+++
T Consensus 174 g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~ 247 (307)
T COG3386 174 GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL 247 (307)
T ss_pred CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence 8655555 4457888887752 111111 1111 2345566777788888776554444 89999887 6653
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.21 E-value=0.098 Score=48.51 Aligned_cols=189 Identities=13% Similarity=0.050 Sum_probs=101.2
Q ss_pred cEEEEEeCCC------cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC------CeEEEEECCCCcccc
Q 016032 34 HILLSGDKKG------QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD------GTVSCTDLETGLALS 101 (396)
Q Consensus 34 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~ 101 (396)
.+++.|+.++ .+..+|..+..-.....-.....-.+++... +...++|+.| .++..||..+.+-..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceec
Confidence 6778888774 5778888776333222222333445555554 5778888888 357788887776433
Q ss_pred eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC-----eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCE
Q 016032 102 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 176 (396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-----~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 176 (396)
.-...... . -.++ -.-+|...++|+.+| .+..||..+.+..... .... ..........++.+
T Consensus 364 ~a~M~~~R-----~---~~~v-~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~---~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 364 VAPMNTKR-----S---DFGV-AVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLT---RRSGHGVAVLGGKL 430 (571)
T ss_pred cCCccCcc-----c---ccee-EEECCEEEEEeccccccccccEEEecCCCCcccccC-CCCc---ceeeeEEEEECCEE
Confidence 22111110 0 0111 122577788888886 5777888775533211 0111 11222222226788
Q ss_pred EEEeeCCC------cEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCc-----EEEEEccccc
Q 016032 177 LLSCGNDH------FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNR-----LRIWDSIFGN 239 (396)
Q Consensus 177 l~~~~~d~------~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~ 239 (396)
.++|+.++ ++..||..+..-. .+..+.....-..++. -++.+.+.|+.|+. |..||..+.+
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWT-LIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCcee-ecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 88888554 5678887654321 1111111111111222 27778888887763 6667776554
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.042 Score=44.34 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=106.7
Q ss_pred EecCCCCcEEEEEeCC-----CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeC----------------
Q 016032 27 EFHPTNNHILLSGDKK-----GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASS---------------- 85 (396)
Q Consensus 27 ~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---------------- 85 (396)
.||||| ++|...-.| |.|-|||....-...--...|.-....+.|.+| +..++.+..
T Consensus 120 vfs~dG-~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D-GrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDG-RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCC-cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC-CcEEEEeCCceecccccCccccchh
Confidence 689999 566654333 679999998543332222668888889999999 777766542
Q ss_pred --CCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE----EEEeCCCCCCCccceee--
Q 016032 86 --DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL----YLVDARTNSRSGEAILI-- 157 (396)
Q Consensus 86 --dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i----~i~d~~~~~~~~~~~~~-- 157 (396)
.-++.+.|..+|+.+....++... ..-.+..++..++|..++.+-..|.- -+.-........+....
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l-----~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pe 272 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASL-----RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPE 272 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhh-----hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCH
Confidence 123455565666666555444211 11237788888888766665433311 11111111111111110
Q ss_pred ---ecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 016032 158 ---HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234 (396)
Q Consensus 158 ---~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 234 (396)
......|-+++.+..++-..++.-..+...+||..++........ ..+..++- ...-+++.+.+|.+.++.
T Consensus 273 e~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 273 EQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc----ccccccee--ccCceEEecCCceEEecc
Confidence 011225778888873444444444556778999987544222211 11222222 333466677788888874
Q ss_pred c
Q 016032 235 S 235 (396)
Q Consensus 235 ~ 235 (396)
-
T Consensus 347 ~ 347 (366)
T COG3490 347 R 347 (366)
T ss_pred c
Confidence 3
No 381
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.013 Score=55.71 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=76.2
Q ss_pred cEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCC
Q 016032 34 HILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGP 113 (396)
Q Consensus 34 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 113 (396)
.+++.|+..|.+...|..++-........-.++|++++|+.+ +..++.|-.+|.|.+||+..+...+.+..+..+..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d-g~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t-- 176 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD-GSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT-- 176 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC-CceeccccCCCcEEEEEccCCcceeeeeecCCccc--
Confidence 468888889999999987753322332335679999999999 99999999999999999999998888876544322
Q ss_pred CcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 114 RTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 114 ~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
.+..+.+..++..++++...|.+
T Consensus 177 ----~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 177 ----GVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred ----eEEEEEEeCCCcEEEEccCCCce
Confidence 25555666666788888888863
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.0034 Score=59.34 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=74.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCC-
Q 016032 127 EKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPH- 205 (396)
Q Consensus 127 ~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~- 205 (396)
.+..++.|+..|.+...|+...-. .........++|++++|+. ++.+++.|-.+|.|.+||+...+..+.+...++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~--~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG--PLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc--hhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 456688999999999999877422 1223444567899999999 999999999999999999987666555544322
Q ss_pred CCceeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 016032 206 KRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 206 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
...|..+.+..++..++++...|. +|.+.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 123333444456667888877776 56554
No 383
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.08 E-value=0.0033 Score=35.74 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=28.9
Q ss_pred CCCceeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 016032 205 HKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 205 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
....|..++|+|...+||.++.+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 44569999999999999999999999999983
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.05 E-value=0.12 Score=47.84 Aligned_cols=149 Identities=16% Similarity=0.099 Sum_probs=80.1
Q ss_pred CcEEEEEeCC------CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC------CeEEEEe
Q 016032 77 DGTVYAASSD------GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYLVD 144 (396)
Q Consensus 77 ~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------g~i~i~d 144 (396)
+..++.|+.. ..+..+|..+++....-..+... .-.+++.. ++...++|+.+ ..+..||
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r--------~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR--------CRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc--------ccccEEEE-CCEEEEEccccCCCcccceEEEec
Confidence 5566777766 35778888877544433322211 12233333 45677778777 3678899
Q ss_pred CCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCc-----EEEEecCCCCCCCccccCCCCCceeEEEEcCCCC
Q 016032 145 ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHF-----ARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 219 (396)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (396)
....+... ........ .-.+++.. ++.+.++|+.||. +-.||..+.+-...-...........+.+ +|.
T Consensus 356 ~~~~~W~~-~a~M~~~R-~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~ 429 (571)
T KOG4441|consen 356 PRTNQWTP-VAPMNTKR-SDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGK 429 (571)
T ss_pred CCCCceec-cCCccCcc-ccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCE
Confidence 88866332 11111111 11122222 7888999998864 77788765433211111111112222233 788
Q ss_pred EEEEEeCCC------cEEEEEcccccc
Q 016032 220 KILTTSQDN------RLRIWDSIFGNL 240 (396)
Q Consensus 220 ~l~~~~~d~------~i~iwd~~~~~~ 240 (396)
+.++|+.++ ++..||..+..-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCce
Confidence 888888654 466777776543
No 385
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.02 E-value=0.22 Score=44.27 Aligned_cols=180 Identities=13% Similarity=0.213 Sum_probs=91.0
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEec------CCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYG------NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
.+.|.++.|+.+. . |++-..||.++++|+.... ...+. .-....+....+..+ |-.+++ .++.+.+.+
T Consensus 80 ~~~iv~~~wt~~e-~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~-GivvLt--~~~~~~~v~ 153 (410)
T PF04841_consen 80 SGRIVGMGWTDDE-E-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN-GIVVLT--GNNRFYVVN 153 (410)
T ss_pred CCCEEEEEECCCC-e-EEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC-CEEEEC--CCCeEEEEe
Confidence 3788999998865 4 5666789999999987544 11111 111122222233323 322333 344443332
Q ss_pred CCCCc-cccee-ecCCCCC--CCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEe
Q 016032 94 LETGL-ALSLM-NVNPNGW--HGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 169 (396)
Q Consensus 94 ~~~~~-~~~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 169 (396)
-.... ....+ ..+.... ........+ ..++.+....+....++.+.+.+-..... -...+++..+++
T Consensus 154 n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i--~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-------i~~~~~i~~iav 224 (410)
T PF04841_consen 154 NIDEPVKLRRLPEIPGLWTKFHWWPSWTVI--PLLSSDRVVEILLANGETIYIIDENSFKQ-------IDSDGPIIKIAV 224 (410)
T ss_pred CccccchhhccccCCCcccccccccccccc--eEeecCcceEEEEecCCEEEEEEcccccc-------ccCCCCeEEEEE
Confidence 22111 11111 1111100 001111111 23445555555556666677555433211 112237999999
Q ss_pred ccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC--CCCCceeEEEEcCCC
Q 016032 170 NPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL--PHKRVVNSAYFSPSG 218 (396)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~ 218 (396)
+| +++++|.-..+|.+.+....-. +.+..+ ........+.|.-+.
T Consensus 225 Sp-ng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 225 SP-NGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CC-CCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 99 9999999999999998875422 222222 223456677776543
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.01 E-value=0.34 Score=46.25 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=60.0
Q ss_pred EEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC--C---cEEEEEeCCCeEEEEEC-CCCcccceeecCCCC
Q 016032 36 LLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN--D---GTVYAASSDGTVSCTDL-ETGLALSLMNVNPNG 109 (396)
Q Consensus 36 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~---~~l~s~~~dg~v~iwd~-~~~~~~~~~~~~~~~ 109 (396)
++.++.++.+...++................|.|+.++|-+ . .+++.|..+..+.+--. .....+.....
T Consensus 502 VvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l---- 577 (1096)
T KOG1897|consen 502 VVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL---- 577 (1096)
T ss_pred EEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc----
Confidence 33444445555555554443333333456789999999752 2 37888887766554433 22222222211
Q ss_pred CCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeC
Q 016032 110 WHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDA 145 (396)
Q Consensus 110 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~ 145 (396)
.....+..|.-..+-.+..+|+++..||.+.-+-+
T Consensus 578 -~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 578 -SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred -CCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence 11222233666667777899999999998776544
No 387
>PHA02713 hypothetical protein; Provisional
Probab=97.01 E-value=0.036 Score=51.37 Aligned_cols=188 Identities=7% Similarity=0.016 Sum_probs=90.8
Q ss_pred cEEEEEeCC------CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCC-----eEEEEECCCCcccce
Q 016032 34 HILLSGDKK------GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDG-----TVSCTDLETGLALSL 102 (396)
Q Consensus 34 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~ 102 (396)
.+++.|+.+ ..+..||..+..-.....-.....-.+++.. + +...+.|+.++ ++..||..+.+-...
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~-g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-D-DTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-C-CEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 577777753 2366777766532111100011111122222 3 66777777653 478888877644322
Q ss_pred eecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC-----------------------CeEEEEeCCCCCCCccceeeec
Q 016032 103 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----------------------GFLYLVDARTNSRSGEAILIHR 159 (396)
Q Consensus 103 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----------------------g~i~i~d~~~~~~~~~~~~~~~ 159 (396)
-..+... . ....+. -++...+.|+.+ ..+..||+.+....... ....
T Consensus 383 ~~mp~~r-----~--~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~ 452 (557)
T PHA02713 383 PDMPIAL-----S--SYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWT 452 (557)
T ss_pred CCCCccc-----c--cccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCc
Confidence 1111110 0 011112 256666777654 24777888775432111 1111
Q ss_pred CCccEEEEEeccCCCCEEEEeeCC------CcEEEEecCC-CCCCCccccCCC-CCceeEEEEcCCCCEEEEEeCCC--c
Q 016032 160 KGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRR-LEAGSSLCDLPH-KRVVNSAYFSPSGSKILTTSQDN--R 229 (396)
Q Consensus 160 ~~~~i~~~~~~~~~~~~l~~~~~d------~~i~~wd~~~-~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~--~ 229 (396)
.. .-.+++.. ++.+.+.|+.+ ..+..||..+ .+- ..+..+.. ......+.+ ++++.++|+.++ .
T Consensus 453 ~r-~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W-~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 453 GT-IRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW-ELITTTESRLSALHTILH--DNTIMMLHCYESYML 526 (557)
T ss_pred cc-ccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCe-eEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence 10 01122222 56777777654 2467898875 222 12222221 122222333 788889999888 6
Q ss_pred EEEEEccccc
Q 016032 230 LRIWDSIFGN 239 (396)
Q Consensus 230 i~iwd~~~~~ 239 (396)
+..||..+.+
T Consensus 527 ~e~yd~~~~~ 536 (557)
T PHA02713 527 QDTFNVYTYE 536 (557)
T ss_pred hhhcCccccc
Confidence 7777776554
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.99 E-value=0.13 Score=44.75 Aligned_cols=190 Identities=12% Similarity=0.087 Sum_probs=87.7
Q ss_pred EEecCCCCcEEEEEe--C----CCcEEEeecccceeeeEecCC--cccceeEEEEecCCCcEEEEEe-------------
Q 016032 26 LEFHPTNNHILLSGD--K----KGQVGVWDFYKVSEKIVYGNI--HSCIVNNIRFNPTNDGTVYAAS------------- 84 (396)
Q Consensus 26 ~~~~~~~~~~l~s~~--~----dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~s~~------------- 84 (396)
+-.-|+| .+++|+- . -|-+.+.|-++.+........ ...--+.+-|.|. .+.++|..
T Consensus 135 ~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 135 VHCLPDG-RIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPR-HNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEE-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETT-TTEEEE-B---HHHHTT---T
T ss_pred eeecCCc-cEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCC-CCEEEEeccCChhhcccCCCh
Confidence 3344677 5676642 2 245778887766555554332 2334566778887 77888763
Q ss_pred -------CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCC--CCCEEEE-EecCCeEEEEeC-CCCCCCc-
Q 016032 85 -------SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLV-ADNFGFLYLVDA-RTNSRSG- 152 (396)
Q Consensus 85 -------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~-~~~~g~i~i~d~-~~~~~~~- 152 (396)
...++.+||+.+.+.++.+.+..+. ..+..+.|.. +..+=++ +.-.+.|..|-- ..+....
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG-------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE 285 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTE-------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCC-------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee
Confidence 2468999999999999999876543 2255566644 4444333 334455555543 2221111
Q ss_pred cceeee-----------------cCCccEEEEEeccCCCCEEE-EeeCCCcEEEEecCCCCCCCccccC-----------
Q 016032 153 EAILIH-----------------RKGSKVVGLHCNPIQPELLL-SCGNDHFARIWDIRRLEAGSSLCDL----------- 203 (396)
Q Consensus 153 ~~~~~~-----------------~~~~~i~~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~----------- 203 (396)
+.+... ....-|+.|..+. +.++|. ++-..|.|+.||+......+.....
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~ 364 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH 364 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCC
Confidence 111110 0123478899998 666655 5557999999999875543332211
Q ss_pred ------CCCCceeEEEEcCCCCEEEEEe
Q 016032 204 ------PHKRVVNSAYFSPSGSKILTTS 225 (396)
Q Consensus 204 ------~~~~~i~~~~~~~~~~~l~~~~ 225 (396)
.-.+...-+..|.||+.|++.+
T Consensus 365 ~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 365 PVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS------S----EEE-TTSSEEEEE-
T ss_pred ccccccccCCCCCeEEEccCCeEEEEEe
Confidence 1122345677788888876654
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.96 E-value=0.0043 Score=35.29 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=30.5
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 99 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 99 (396)
....|.+++|+|. .++||.+..+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence 4567999999999 999999999999999998 4544
No 390
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.96 E-value=0.27 Score=44.24 Aligned_cols=153 Identities=9% Similarity=0.111 Sum_probs=86.3
Q ss_pred cccCCeEEEEecCC----CCcEEEEEeCCCcEEEeecccc-----eeeeEe----cCCcccceeEEEEecCCCcEEEEEe
Q 016032 18 YHSRRVTCLEFHPT----NNHILLSGDKKGQVGVWDFYKV-----SEKIVY----GNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 18 ~h~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~----~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
|...-|..+.|.|- -+.+||.- ....|.||.+... +..... .....---..+.|+|. ...|+.-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEe
Confidence 34456889999985 34566654 4678999998621 111111 0011112345789998 77776655
Q ss_pred CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC-CeEEEEeCCCCCCCc-cceeeecCCc
Q 016032 85 SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-GFLYLVDARTNSRSG-EAILIHRKGS 162 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g~i~i~d~~~~~~~~-~~~~~~~~~~ 162 (396)
....-.++++......-....... ..|.|.+|.+||+.|+++-.+ =.-++||-....... .......-++
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~--------G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~ 203 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTS--------GLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGG 203 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCC--------ceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCC
Confidence 554445666655443333333333 339999999999988877544 467899865532211 1112233344
Q ss_pred cEEEEEeccCCCCEEEEeeC
Q 016032 163 KVVGLHCNPIQPELLLSCGN 182 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~ 182 (396)
.|.++.-.- ...+|.+.+
T Consensus 204 ~Icsi~AT~--dsqVAvaTE 221 (671)
T PF15390_consen 204 YICSIEATV--DSQVAVATE 221 (671)
T ss_pred ceEEEEEec--cceEEEEec
Confidence 666665543 334444443
No 391
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.95 E-value=0.15 Score=41.29 Aligned_cols=185 Identities=15% Similarity=0.117 Sum_probs=107.6
Q ss_pred eEEEEecCCCCcEEEEEeCCC--cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc
Q 016032 23 VTCLEFHPTNNHILLSGDKKG--QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 100 (396)
Q Consensus 23 v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 100 (396)
...+.|..++ .++-+.+.-| .|+.+|+.+++......-....---.++... +....-.=.++...+||..+-+.+
T Consensus 47 TQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEE
Confidence 5568886677 6777776655 6999999998765544322222333444443 344444456889999999999888
Q ss_pred ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCC---ccEEEEEeccCCCCEE
Q 016032 101 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKG---SKVVGLHCNPIQPELL 177 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l 177 (396)
..+..+.++ ..++ .++..|+.+..+..++++|..+.+....+.. ...+ ..++.+.|. ++.+.
T Consensus 124 ~~~~y~~EG----------WGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V-~~~g~pv~~LNELE~i--~G~Iy 188 (264)
T PF05096_consen 124 GTFPYPGEG----------WGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV-TDNGRPVSNLNELEYI--NGKIY 188 (264)
T ss_dssp EEEE-SSS------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE--EETTEE---EEEEEEE--TTEEE
T ss_pred EEEecCCcc----------eEEE--cCCCEEEEECCccceEEECCcccceEEEEEE-EECCEECCCcEeEEEE--cCEEE
Confidence 888776543 3344 5677888888899999999987665443322 2222 235566665 45555
Q ss_pred EEeeCCCcEEEEecCCCCCCCcc------c-------cCCCCCceeEEEEcCCCCEEEEEe
Q 016032 178 LSCGNDHFARIWDIRRLEAGSSL------C-------DLPHKRVVNSAYFSPSGSKILTTS 225 (396)
Q Consensus 178 ~~~~~d~~i~~wd~~~~~~~~~~------~-------~~~~~~~i~~~~~~~~~~~l~~~~ 225 (396)
|=.-....|...|..+++....+ . ......-.+.||++|....|.+.+
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555556666666554321111 0 011245689999999665554443
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.93 E-value=0.075 Score=49.30 Aligned_cols=53 Identities=6% Similarity=-0.110 Sum_probs=31.9
Q ss_pred ceEEEEcCc-c--chhhhhcCCCCCCCcceeeeccCCcEEEeec-CC--cEEEEcCCCcceee
Q 016032 291 PIDFIDITT-G--QLVAEVMDPNITTISPVNKLHPRDDVLASGS-SR--SIFIWRPKEKSELV 347 (396)
Q Consensus 291 ~i~vwd~~~-~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~-d~--~i~iw~~~~~~~~~ 347 (396)
.+..||..+ . +.+..+..+. .... +..-+|++.++|+ |+ .+..||+.+.+=..
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~~r--~~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTESRL--SALH--TILHDNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred eEEEecCCCCCCeeEccccCccc--ccce--eEEECCEEEEEeeecceeehhhcCcccccccc
Confidence 477899876 3 3344443222 1122 2334788888888 77 77788887776433
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.18 Score=40.93 Aligned_cols=150 Identities=12% Similarity=0.044 Sum_probs=88.5
Q ss_pred eeEEEEecCCCcEEEEEeCCCe-EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-----CCeE
Q 016032 67 VNNIRFNPTNDGTVYAASSDGT-VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-----FGFL 140 (396)
Q Consensus 67 v~~~~~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~g~i 140 (396)
-..|+|+|....-++.+-.-|+ ..++|....+....+......+ ..-.=.|+|+|.+|.+.-. .|.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvfs~dG~~LYATEndfd~~rGVi 142 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVFSPDGRLLYATENDFDPNRGVI 142 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce-------eecccccCCCCcEEEeecCCCCCCCceE
Confidence 3456777764455555555554 5688988887766654433221 1222358999999988643 3789
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC------------------CCcEEEEecCCCCCCCcccc
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN------------------DHFARIWDIRRLEAGSSLCD 202 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------------------d~~i~~wd~~~~~~~~~~~~ 202 (396)
-+||.+.+-. ..-.+..++-....+.|.+ ++..++.+.. .-++.+.|..+++.......
T Consensus 143 GvYd~r~~fq--rvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 143 GVYDAREGFQ--RVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred EEEecccccc--eecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 9999985322 2223444555677889999 9998887642 11233334333332222211
Q ss_pred C--CCCCceeEEEEcCCCCEEEEEeC
Q 016032 203 L--PHKRVVNSAYFSPSGSKILTTSQ 226 (396)
Q Consensus 203 ~--~~~~~i~~~~~~~~~~~l~~~~~ 226 (396)
. .+.-.|..++..++|..++.+-.
T Consensus 220 p~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 220 PASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred chhhhhcceeeeeeCCCCcEEEEEEe
Confidence 1 24456778888888876665543
No 394
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.83 E-value=0.21 Score=41.05 Aligned_cols=219 Identities=15% Similarity=0.216 Sum_probs=118.7
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCC---ccc-eeee-----cCCccEEEEEeccCCCC------------EE
Q 016032 119 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRS---GEA-ILIH-----RKGSKVVGLHCNPIQPE------------LL 177 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~---~~~-~~~~-----~~~~~i~~~~~~~~~~~------------~l 177 (396)
...++++|.+.+.++....+...+||....... ..+ .... ......+.+.|+. ... .+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 678999999998898888999999998721110 011 1111 1123567777775 222 35
Q ss_pred EEeeCCCcEEEEecCCCCCC--CccccC--CCCCce-eEEEEcC--CCCEEEEEe-CCCcEEEEEcccccccCCCcceee
Q 016032 178 LSCGNDHFARIWDIRRLEAG--SSLCDL--PHKRVV-NSAYFSP--SGSKILTTS-QDNRLRIWDSIFGNLDSPSREIVH 249 (396)
Q Consensus 178 ~~~~~d~~i~~wd~~~~~~~--~~~~~~--~~~~~i-~~~~~~~--~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 249 (396)
+.+++||+|.-|...-.... .....+ ...+.| ..+++-. .+.+|+.+. ..++|.+||-.-.+...+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~------ 177 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP------ 177 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC------
Confidence 77889999999985322220 111111 112223 3455543 355665554 478899988654432111
Q ss_pred cccccccCCceeEEeCCCCCCCceeeEeeeeee-----------ecccccccceEEEEcCccchhhhhcC-CCCCCCcce
Q 016032 250 SHDFNRHLTPFRAEWDPKDPSESLAVIGRYISE-----------NYNGAALHPIDFIDITTGQLVAEVMD-PNITTISPV 317 (396)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----------~~~g~~d~~i~vwd~~~~~~~~~~~~-~~~~~i~~~ 317 (396)
..+.... +-.-|.|- ....+ |..+.. ...|..-|.|.+||+ .|++++++.. .....-+.+
T Consensus 178 -g~F~DP~--iPagyAPF---nIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 178 -GSFIDPA--LPAGYAPF---NVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred -CCccCCC--CCCCCCCc---ceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCcee
Confidence 0111000 01111111 00011 111111 114556688999998 5777777642 223344444
Q ss_pred eeecc------CCcEEEeec-CCcEEEEcCCCcceeeeccccc
Q 016032 318 NKLHP------RDDVLASGS-SRSIFIWRPKEKSELVEQKEEM 353 (396)
Q Consensus 318 ~~~~~------~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~ 353 (396)
+..| .|.+|+--- ||+|..+|..+++.+..+....
T Consensus 250 -a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 250 -AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred -eeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 3433 455555433 9999999999999887776644
No 395
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.78 E-value=0.00024 Score=65.33 Aligned_cols=101 Identities=15% Similarity=0.048 Sum_probs=50.2
Q ss_pred cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECC--CCcccceeecCCCCCCCCCcceeeeE
Q 016032 44 QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLE--TGLALSLMNVNPNGWHGPRTWRMLYG 121 (396)
Q Consensus 44 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~ 121 (396)
.+++-+.........+.++..+.|..+.|-..+...+. -.-|.+.+|++. .|+....+.++...-.+... ..|.-
T Consensus 112 ~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~-~~V~w 188 (1283)
T KOG1916|consen 112 GVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP-QLVSW 188 (1283)
T ss_pred hhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc-ceeee
Confidence 34444443322222333566777888887543222222 234668889875 35544444433322111111 22333
Q ss_pred EEeCCCCCEEEEEecCCeEEEEeCCC
Q 016032 122 MDINPEKGVVLVADNFGFLYLVDART 147 (396)
Q Consensus 122 ~~~~~~~~~l~~~~~~g~i~i~d~~~ 147 (396)
+-|-++.-++..+..++.+++..+.+
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINR 214 (1283)
T ss_pred cccccccceeeeccCCCceeEeeech
Confidence 33344556666666777777766654
No 396
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.78 E-value=0.55 Score=45.12 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=49.5
Q ss_pred CcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeC----------------CCCCEEEEEecCCeE
Q 016032 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDIN----------------PEKGVVLVADNFGFL 140 (396)
Q Consensus 77 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------------~~~~~l~~~~~~g~i 140 (396)
+..|+.++.++.|.-.|..+|+.+..+............ .....+++. ..+..++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 567888888999999999999988877654332110000 001122221 134578889999999
Q ss_pred EEEeCCCCCCCc
Q 016032 141 YLVDARTNSRSG 152 (396)
Q Consensus 141 ~i~d~~~~~~~~ 152 (396)
.-.|.++++.+.
T Consensus 273 iALDA~TGk~~W 284 (764)
T TIGR03074 273 IALDADTGKLCE 284 (764)
T ss_pred EEEECCCCCEEE
Confidence 999999987664
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.72 E-value=0.077 Score=47.47 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=88.9
Q ss_pred cceeEEEEecCCCcEEEEEe--CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC----CCEEEEEecCC
Q 016032 65 CIVNNIRFNPTNDGTVYAAS--SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE----KGVVLVADNFG 138 (396)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~g 138 (396)
.++..++|.-. .+.+++.- ..|.+++=| ...+..| .-|..+.|.|- ...+++.....
T Consensus 20 HPvhGlaWTDG-kqVvLT~L~l~~gE~kfGd---s~viGqF-------------EhV~GlsW~P~~~~~~paLLAVQHkk 82 (671)
T PF15390_consen 20 HPVHGLAWTDG-KQVVLTDLQLHNGEPKFGD---SKVIGQF-------------EHVHGLSWAPPCTADTPALLAVQHKK 82 (671)
T ss_pred ccccceEecCC-CEEEEEeeeeeCCccccCC---ccEeecc-------------ceeeeeeecCcccCCCCceEEEeccc
Confidence 47888999743 44444432 233333322 1222222 12889999885 34667777778
Q ss_pred eEEEEeCCCCC-----CCccceeeecCCcc--EEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeE
Q 016032 139 FLYLVDARTNS-----RSGEAILIHRKGSK--VVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNS 211 (396)
Q Consensus 139 ~i~i~d~~~~~-----~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~ 211 (396)
.|.+|.+.... .......-.....+ .....|+| ....|++-.....-.+++++.... +....+...+.|.|
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi~~~G~IhC 160 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSS-RVKADIKTSGLIHC 160 (671)
T ss_pred eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCc-eEEEeccCCceEEE
Confidence 99999986321 11110000011111 23578999 778777766655555667664332 22223356788999
Q ss_pred EEEcCCCCEEEEEeCC-CcEEEEEcc
Q 016032 212 AYFSPSGSKILTTSQD-NRLRIWDSI 236 (396)
Q Consensus 212 ~~~~~~~~~l~~~~~d-~~i~iwd~~ 236 (396)
.+|.+||+.|+++-.. =.-++||-.
T Consensus 161 ACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 161 ACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEecCcCCEEEEEeCCeEEEEEecCc
Confidence 9999999998776433 345677754
No 398
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.68 E-value=0.28 Score=40.38 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=87.8
Q ss_pred ceeEEEEecCCCcEEEEEe---CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEE
Q 016032 66 IVNNIRFNPTNDGTVYAAS---SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 142 (396)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i 142 (396)
.+...+++++ +..++... ....|.++.. +........ . ..+..-.|++++...++...+...++
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-g---------~~l~~PS~d~~g~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-G---------GSLTRPSWDPDGWVWTVDDGSGGVRV 91 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEcC--CCcceeecc-C---------CccccccccCCCCEEEEEcCCCceEE
Confidence 6889999999 66655544 3344555543 333222211 1 12667789999887777776666666
Q ss_pred Ee-CCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee---CCCcEEEEecCCCCCC--Cc----cccC-CCCCceeE
Q 016032 143 VD-ARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG---NDHFARIWDIRRLEAG--SS----LCDL-PHKRVVNS 211 (396)
Q Consensus 143 ~d-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~--~~----~~~~-~~~~~i~~ 211 (396)
+. ...+...............|..+.++| ++..++... .++.|.+--+...... .. +... .....+..
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence 63 233222211112222212799999999 888777655 3577877765433333 11 1111 23467899
Q ss_pred EEEcCCCCEEEEEeCCC
Q 016032 212 AYFSPSGSKILTTSQDN 228 (396)
Q Consensus 212 ~~~~~~~~~l~~~~~d~ 228 (396)
+.|.+++.+++.+...+
T Consensus 171 v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 171 VAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeecCCCEEEEEeCCCC
Confidence 99999998877766543
No 399
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.60 E-value=0.3 Score=39.70 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=75.1
Q ss_pred cccceeEEEEecCCCcEEEEEeCCC--eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
...-...+.|..+ +.++-+.+.-| .|+.+|+.+++......++...+ --.++.. ++......-.++..
T Consensus 43 ~~aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F--------gEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 43 PTAFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF--------GEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp TT-EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE-TTEEEEEESSSSEE
T ss_pred CcccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc--------ceeEEEE-CCEEEEEEecCCeE
Confidence 3445667888666 77777777655 79999999999888877766543 2334433 34455566778999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccc
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLC 201 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 201 (396)
.+||..+.+..... .. ...-..++. ++..|+.......|+++|..+.+....+.
T Consensus 113 f~yd~~tl~~~~~~-~y---~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 113 FVYDPNTLKKIGTF-PY---PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEEETTTTEEEEEE-E----SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EEEccccceEEEEE-ec---CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEE
Confidence 99999886554332 11 224455653 55666666667789999987655444433
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.58 E-value=0.13 Score=40.43 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=35.8
Q ss_pred eeccCCcEEEeec-CCcEEEEcCCCcceeeeccccceEEEeecCCCc
Q 016032 319 KLHPRDDVLASGS-SRSIFIWRPKEKSELVEQKEEMKIIVCGKADKK 364 (396)
Q Consensus 319 ~~~~~~~~l~sg~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (396)
++..+|.+.++.- .++|...|+.+|+.+.+++.+...++|..+..+
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 4566777766655 799999999999999999998877776555444
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.58 E-value=0.33 Score=39.94 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=88.2
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE-CCCCccc
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD-LETGLAL 100 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd-~~~~~~~ 100 (396)
.+.+.++++++..+.+....++.-.||-...+....... ....+....|.++ +...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999996555555233333444333333333332 2337888899998 76666666666666664 2333322
Q ss_pred ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe---cCCeEEEEeCCCCCCC-----cccee-eecCCccEEEEEecc
Q 016032 101 SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD---NFGFLYLVDARTNSRS-----GEAIL-IHRKGSKVVGLHCNP 171 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~g~i~i~d~~~~~~~-----~~~~~-~~~~~~~i~~~~~~~ 171 (396)
..........+ .|..+.++|||..++... .++.|.+--+.....- ..... .......+..+.|.+
T Consensus 102 -~~~v~~~~~~~-----~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 -PVEVDWPGLRG-----RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred -eEEecccccCC-----ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 11111111111 499999999999888776 3467777655432211 11111 112234789999998
Q ss_pred CCCCEEEEeeCCC
Q 016032 172 IQPELLLSCGNDH 184 (396)
Q Consensus 172 ~~~~~l~~~~~d~ 184 (396)
+..+++.+...+
T Consensus 176 -~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 -DSTLVVLGRSAG 187 (253)
T ss_pred -CCEEEEEeCCCC
Confidence 777666665443
No 402
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.57 E-value=0.43 Score=41.14 Aligned_cols=186 Identities=15% Similarity=0.110 Sum_probs=81.5
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe--------------------
Q 016032 25 CLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS-------------------- 84 (396)
Q Consensus 25 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------------------- 84 (396)
...++|+.+ .++-......++-.|+.+.+....+ .....-+-...|..+.....+.+.
T Consensus 85 g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 85 GGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp T-EE-TTSS-EEEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred ceEEecCCC-eEEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 455667764 3433334457888888887655444 335555555666433223333321
Q ss_pred ---CCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC-----eEEEEeCCCCCCCcccee
Q 016032 85 ---SDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDARTNSRSGEAIL 156 (396)
Q Consensus 85 ---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-----~i~i~d~~~~~~~~~~~~ 156 (396)
....|.--|+.+|+....+.... -+..+.|+|....+++=+..| .-++|-+++.......+.
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~~~----------wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFEDTD----------WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH 232 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEESS-----------EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred hhCCCceEEEEECCCCceeEEEecCc----------cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee
Confidence 12345556777776554443221 167788999765555443333 125555544322222222
Q ss_pred eecCCccEEEEEeccCCCCEEEEee-----CCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCC
Q 016032 157 IHRKGSKVVGLHCNPIQPELLLSCG-----NDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQD 227 (396)
Q Consensus 157 ~~~~~~~i~~~~~~~~~~~~l~~~~-----~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 227 (396)
.+.....+..=-|.| ++..|.--+ .+..|.-+|+.+.+... +. .......+--+++|++++-=+.|
T Consensus 233 ~~~~~e~~gHEfw~~-DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~---~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 233 RRMEGESVGHEFWVP-DGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-LM---EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp ---TTEEEEEEEE-T-TSS-EEEEEEETTT--EEEEEE-TTT--EEE-EE---EE-SEEEEEE-TTSSEEEEEE--
T ss_pred cCCCCcccccccccC-CCCEEEEEeecCCCCceEEEeeCCCCCCceE-EE---eCCceeeeEEcCCCCEEEecCCC
Confidence 223333455556788 776554422 23456667776644321 11 11234455567788877654443
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.56 E-value=0.38 Score=40.44 Aligned_cols=159 Identities=10% Similarity=0.051 Sum_probs=75.4
Q ss_pred cccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEEC-CC
Q 016032 18 YHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDL-ET 96 (396)
Q Consensus 18 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~-~~ 96 (396)
+-.+.+..+.-+++| +++++++.-....-||.-...-.... ..-...|..|.|.|+ +.+.+.+ ..|.|++=+. ..
T Consensus 142 ~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~-~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 142 ETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPD-GNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TT-S-EEEEE-TTTEEEEEE-TTE
T ss_pred CCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCC-CCEEEEe-CCcEEEEccCCCC
Confidence 344678888899999 67777765444556775432211111 235688999999998 5555544 7888888772 21
Q ss_pred CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCE
Q 016032 97 GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPEL 176 (396)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 176 (396)
.+. +..+..+ .......+..++|.+++...++|+. |.+.. ....++.-.+......-......+.|.+ ...-
T Consensus 218 ~~~---w~~~~~~--~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~-~~~g 289 (302)
T PF14870_consen 218 GET---WSEPIIP--IKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVN-PDKG 289 (302)
T ss_dssp EEE---E---B-T--TSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEE-TTEE
T ss_pred ccc---cccccCC--cccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCccceECccccCCCCceEEEEEcC-CCce
Confidence 111 1110000 0111123789999998777776654 43332 3333332222111222234578888876 4444
Q ss_pred EEEeeCCCcEEEE
Q 016032 177 LLSCGNDHFARIW 189 (396)
Q Consensus 177 l~~~~~d~~i~~w 189 (396)
++.| .+|.|.-|
T Consensus 290 f~lG-~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLG-QDGVLLRY 301 (302)
T ss_dssp EEE--STTEEEEE
T ss_pred EEEC-CCcEEEEe
Confidence 5554 67877655
No 404
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.075 Score=46.79 Aligned_cols=147 Identities=15% Similarity=0.147 Sum_probs=91.0
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC------CcEEEEEeCCCeEEEEECCCCcccceeecCCC
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN------DGTVYAASSDGTVSCTDLETGLALSLMNVNPN 108 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 108 (396)
+|.++..-..++-.|++.++.+.... -+.. |+-+.+.|+. ...-+.|-.+..|.-||.+-...- .+.....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQS 424 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeec
Confidence 44556666678888888888777763 3433 7777787762 112344666888999998743221 1111100
Q ss_pred CCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEE
Q 016032 109 GWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARI 188 (396)
Q Consensus 109 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~ 188 (396)
..........|++-. ...++++|+.+|.|++||- .+..... .+...+.+|..+..+. +|.+|++.+ +..+.+
T Consensus 425 --kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKT--AlPgLG~~I~hVdvta-dGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 425 --KQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKT--ALPGLGDAIKHVDVTA-DGKWILATC-KTYLLL 496 (644)
T ss_pred --cccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhh--cccccCCceeeEEeec-cCcEEEEec-ccEEEE
Confidence 111111124454444 3457999999999999997 4333322 3445566899999998 888887765 457777
Q ss_pred EecC
Q 016032 189 WDIR 192 (396)
Q Consensus 189 wd~~ 192 (396)
-++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 7754
No 405
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.55 E-value=0.22 Score=46.27 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=81.9
Q ss_pred cceeEEEEecCCCcEEEEEe------CCC--eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec
Q 016032 65 CIVNNIRFNPTNDGTVYAAS------SDG--TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN 136 (396)
Q Consensus 65 ~~v~~~~~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 136 (396)
..+...+++|+ ++.++... .|. .|.+++. +.....+... . ....-.|+|+|..+++...
T Consensus 350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g-~---------~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEG-H---------SLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecC-C---------CCCCceECCCCCceEEEec
Confidence 46788999999 66665544 244 4444453 2222222111 1 1556679999887776643
Q ss_pred C------------CeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCC-ccc--
Q 016032 137 F------------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGS-SLC-- 201 (396)
Q Consensus 137 ~------------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~-- 201 (396)
. +.+++.++..+... . .....|..+.|+| ++..++... ++.|++=-+.....+. .+.
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~----~--~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVA----S--RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhh----h--ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence 2 23444444332221 1 2234699999999 998887766 4777773322211111 111
Q ss_pred -cC--CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 202 -DL--PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 202 -~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
.+ .....+.++.|..++.++ ++..++...+|.+
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 11 223346889999988855 5555554445544
No 406
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.43 E-value=0.46 Score=39.94 Aligned_cols=157 Identities=16% Similarity=0.083 Sum_probs=76.2
Q ss_pred CcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEE
Q 016032 62 IHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLY 141 (396)
Q Consensus 62 ~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 141 (396)
.-...+..+.-+++ +.++++++......-|+--...-...-... ...|.+|.|.|++.+.+.+ ..|.|+
T Consensus 142 ~~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~---------~~riq~~gf~~~~~lw~~~-~Gg~~~ 210 (302)
T PF14870_consen 142 ETSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNS---------SRRIQSMGFSPDGNLWMLA-RGGQIQ 210 (302)
T ss_dssp S----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--S---------SS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred CCcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCc---------cceehhceecCCCCEEEEe-CCcEEE
Confidence 34567888888888 888888876666667764322111111111 1349999999998776655 888888
Q ss_pred EEeC-CCCCCCcc-ceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCC
Q 016032 142 LVDA-RTNSRSGE-AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSG 218 (396)
Q Consensus 142 i~d~-~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~ 218 (396)
+=+. .......+ ..........+..++|.+ +....++|+. |.+.+ ....++.-+..... .-......+.|.+..
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~-G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGS-GTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEEST-T-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETT
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeCC-ccEEE-eCCCCccceECccccCCCCceEEEEEcCCC
Confidence 8772 22111111 111112333589999998 7777776654 54433 33332222222111 234567888887665
Q ss_pred CEEEEEeCCCcEEEE
Q 016032 219 SKILTTSQDNRLRIW 233 (396)
Q Consensus 219 ~~l~~~~~d~~i~iw 233 (396)
+-++.| .+|.|--|
T Consensus 288 ~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 288 KGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEEE--STTEEEEE
T ss_pred ceEEEC-CCcEEEEe
Confidence 555555 57776554
No 407
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.43 E-value=0.25 Score=38.53 Aligned_cols=153 Identities=16% Similarity=0.239 Sum_probs=81.5
Q ss_pred CEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCC------cEEEE---ecCC-CCCCC
Q 016032 129 GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH------FARIW---DIRR-LEAGS 198 (396)
Q Consensus 129 ~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~------~i~~w---d~~~-~~~~~ 198 (396)
..|+.+.....|.+|++...... .. .....-+.|..+.++. .|+++++--.+. .+|+| .... .....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~-~~-~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECP-LL-CTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCc-ee-EEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 55655577788999999843222 22 2222335799999999 899999864322 55664 2221 00000
Q ss_pred ---------------------ccccCCCCCceeEEEEcC-CCCEEEEEeCCCcEEEEEcccccccCCCcceeeccccccc
Q 016032 199 ---------------------SLCDLPHKRVVNSAYFSP-SGSKILTTSQDNRLRIWDSIFGNLDSPSREIVHSHDFNRH 256 (396)
Q Consensus 199 ---------------------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
.+-.+.-..++.+++-.| .|+ |++|+ ++.+.+|.+........ -....+|...
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~~~---~~~~lDFe~~ 180 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQSE---KFSFLDFERS 180 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEecc---cccEEechhh
Confidence 001112345677888888 555 44554 56899998875543110 0111122222
Q ss_pred CCceeEEeCCCCCCCceeeEeeeeeeecccccccceEEEEc
Q 016032 257 LTPFRAEWDPKDPSESLAVIGRYISENYNGAALHPIDFIDI 297 (396)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~d~~i~vwd~ 297 (396)
.......|.| ..+.+.+.|++ ...+..++++.+
T Consensus 181 l~~~~~~~~p----~~v~ic~~yiA----~~s~~ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKP----TQVAICEGYIA----VMSDLEVLVLKL 213 (215)
T ss_pred hhheecCceE----EEEEEEeeEEE----EecCCEEEEEEE
Confidence 2222223333 34566677877 344555666544
No 408
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.41 Score=39.14 Aligned_cols=158 Identities=15% Similarity=0.077 Sum_probs=97.3
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 142 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i 142 (396)
-..-+..+.++ +++.+.+..+.-+++.|+.+......+..-... . -..+ +.-.|++..++..+.-+.+
T Consensus 85 ~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-----g--yayg--v~vsGn~aYVadlddgfLi 152 (370)
T COG5276 85 ARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-----G--YAYG--VYVSGNYAYVADLDDGFLI 152 (370)
T ss_pred hhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCC-----c--eEEE--EEecCCEEEEeeccCcEEE
Confidence 34556777777 457777777788999999887654433211110 0 1233 3345788888887777888
Q ss_pred EeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEE
Q 016032 143 VDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKIL 222 (396)
Q Consensus 143 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 222 (396)
.|+.........-.....+..-..++.+ +++...+..|+-+.+-|+........+........+.++..+++-.+++
T Consensus 153 vdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 153 VDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred EECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE
Confidence 8988765443222222222233455554 5777778889999999998766555444433444678888887766666
Q ss_pred EEeCCCcEEEEEccc
Q 016032 223 TTSQDNRLRIWDSIF 237 (396)
Q Consensus 223 ~~~~d~~i~iwd~~~ 237 (396)
... --+.+-|..+
T Consensus 230 vy~--egvlivd~s~ 242 (370)
T COG5276 230 VYD--EGVLIVDVSG 242 (370)
T ss_pred Ecc--cceEEEecCC
Confidence 553 2355555543
No 409
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.39 E-value=0.3 Score=42.55 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=65.5
Q ss_pred CcEEEEEe-CCCeEEEEECCCCcc----cceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe------cCCeEEEEeC
Q 016032 77 DGTVYAAS-SDGTVSCTDLETGLA----LSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD------NFGFLYLVDA 145 (396)
Q Consensus 77 ~~~l~s~~-~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~~g~i~i~d~ 145 (396)
.++|+..+ ..+.|.|.|+.+... .+.++.. .............+..-|+|+.++++- ..|.+.++|-
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~--ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPE--EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HH--HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHH--HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 55666655 678999999985422 2222110 000011112244455567888888752 2357888887
Q ss_pred CCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeC--------------------CCcEEEEecCCCCCCCccccCCC
Q 016032 146 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGN--------------------DHFARIWDIRRLEAGSSLCDLPH 205 (396)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--------------------d~~i~~wd~~~~~~~~~~~~~~~ 205 (396)
++......-.........-..+-|.| ..+.+++... ..++.+||+.+.+..+.+..-..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred ccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 76544332211112223456778888 7777777532 35799999987665555543222
Q ss_pred CCceeEEEEcC--CCCEEEEEe-CCCcEEEE
Q 016032 206 KRVVNSAYFSP--SGSKILTTS-QDNRLRIW 233 (396)
Q Consensus 206 ~~~i~~~~~~~--~~~~l~~~~-~d~~i~iw 233 (396)
...+..+.|.. +..+=++++ ..++|..|
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 23455676654 444433333 34444444
No 410
>PHA03098 kelch-like protein; Provisional
Probab=96.36 E-value=0.38 Score=44.75 Aligned_cols=187 Identities=11% Similarity=-0.029 Sum_probs=86.3
Q ss_pred cEEEEEeCCC------cEEEeecccceeeeEec-CCcccceeEEEEecCCCcEEEEEeCC-----CeEEEEECCCCcccc
Q 016032 34 HILLSGDKKG------QVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCTDLETGLALS 101 (396)
Q Consensus 34 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~ 101 (396)
.+++.|+.++ .+..||..+..-..... ....... +++.. + +..++.|+.+ ..+..||..+.+...
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~-~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-N-NRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-C-CEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 5677776543 46677776654322110 0011111 22222 3 6677777765 346778877655432
Q ss_pred eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC------CeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCC
Q 016032 102 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 175 (396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 175 (396)
.-..+. +.. -.+++ .-++..++.|+.. ..+..||+.+....... ...... .-.+++.. ++.
T Consensus 373 ~~~lp~-----~r~---~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r-~~~~~~~~--~~~ 439 (534)
T PHA03098 373 EPPLIF-----PRY---NPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS-PLPISH-YGGCAIYH--DGK 439 (534)
T ss_pred CCCcCc-----CCc---cceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC-CCCccc-cCceEEEE--CCE
Confidence 211111 000 11111 1245666666532 46888998765432111 111110 01122222 556
Q ss_pred EEEEeeCC--------CcEEEEecCCCCCCCccccCCCC-CceeEEEEcCCCCEEEEEeCC-----CcEEEEEccccc
Q 016032 176 LLLSCGND--------HFARIWDIRRLEAGSSLCDLPHK-RVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFGN 239 (396)
Q Consensus 176 ~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 239 (396)
+++.|+.+ ..+.+||..+.+-.. +...... .....+.+ ++++++.|+.+ +.+.+||..+.+
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTE-LSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceee-CCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 77777643 238888887543211 1111111 11112222 66777777654 467777776543
No 411
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.23 E-value=0.85 Score=42.85 Aligned_cols=116 Identities=12% Similarity=0.165 Sum_probs=75.3
Q ss_pred eeEEEeCC--CCCEEEEEecCCeEEEEeCCC-------C----CC-----CccceeeecCCccEEEEEec--cCCCCEEE
Q 016032 119 LYGMDINP--EKGVVLVADNFGFLYLVDART-------N----SR-----SGEAILIHRKGSKVVGLHCN--PIQPELLL 178 (396)
Q Consensus 119 v~~~~~~~--~~~~l~~~~~~g~i~i~d~~~-------~----~~-----~~~~~~~~~~~~~i~~~~~~--~~~~~~l~ 178 (396)
|+.|.... +...|+++..||.|.+|.++. . .. ...+......+..+.+++++ . ..++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEE
Confidence 55554433 457888999999999997632 0 00 00111122234468899998 6 778999
Q ss_pred EeeCCCcEEEEecCCCC-CCCccccCCCCCceeEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 016032 179 SCGNDHFARIWDIRRLE-AGSSLCDLPHKRVVNSAYFSPSG---S---KILTTSQDNRLRIWDS 235 (396)
Q Consensus 179 ~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~ 235 (396)
+++....|.||-..... .........+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99888888888765421 11111122466679999998732 2 7788889999999888
No 412
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.06 E-value=1.5 Score=42.28 Aligned_cols=208 Identities=12% Similarity=0.057 Sum_probs=112.3
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCccc-------ceeEEEEecC---------------CCcEEEEEeCCCeEEEE
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-------IVNNIRFNPT---------------NDGTVYAASSDGTVSCT 92 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~~~---------------~~~~l~s~~~dg~v~iw 92 (396)
.|+.++.++.|.-.|..+++.+..+...... ....+.+... ....++.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4667777889999999998887776421110 1122333211 13478888899999999
Q ss_pred ECCCCcccceeecCCCC-CC---CCCcceeeeEEEeCC--CCCEEEEEec----------CCeEEEEeCCCCCCCcccee
Q 016032 93 DLETGLALSLMNVNPNG-WH---GPRTWRMLYGMDINP--EKGVVLVADN----------FGFLYLVDARTNSRSGEAIL 156 (396)
Q Consensus 93 d~~~~~~~~~~~~~~~~-~~---~~~~~~~v~~~~~~~--~~~~l~~~~~----------~g~i~i~d~~~~~~~~~~~~ 156 (396)
|.++|+....+..+... +. +... .....+.-.| .+..+++|+. +|.|+-+|.++++.......
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~-~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTP-PGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCC-CcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 99999988665332110 00 0000 0000111112 1345666642 68899999999876654321
Q ss_pred eec--------------CCccE-EEEEeccCCCCEEEEeeC------------------CCcEEEEecCCCCCCCccccC
Q 016032 157 IHR--------------KGSKV-VGLHCNPIQPELLLSCGN------------------DHFARIWDIRRLEAGSSLCDL 203 (396)
Q Consensus 157 ~~~--------------~~~~i-~~~~~~~~~~~~l~~~~~------------------d~~i~~wd~~~~~~~~~~~~~ 203 (396)
... ....+ ..+++.+ ...+++.+.. .+.|.-.|.++++..-..+..
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 100 00011 2344555 3333333221 234555566665543333332
Q ss_pred CCC-------CceeEEEEcC-CCC---EEEEEeCCCcEEEEEcccccccCCC
Q 016032 204 PHK-------RVVNSAYFSP-SGS---KILTTSQDNRLRIWDSIFGNLDSPS 244 (396)
Q Consensus 204 ~~~-------~~i~~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~~~ 244 (396)
.|. ....-+.+.. +|+ .++.++.+|.+.++|.++|+.+.+.
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 221 1112222322 553 7889999999999999999976543
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.03 E-value=0.038 Score=30.42 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=27.1
Q ss_pred CCeEEEEecCCCC--cEEEEEeCCCcEEEeeccc
Q 016032 21 RRVTCLEFHPTNN--HILLSGDKKGQVGVWDFYK 52 (396)
Q Consensus 21 ~~v~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~ 52 (396)
++|.++.|+|... .+|+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999998653 5888888889999999985
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.051 Score=52.28 Aligned_cols=153 Identities=12% Similarity=0.025 Sum_probs=91.5
Q ss_pred eecccc-CCeEEEEecCCCCcEEE--EEeCCCcEEEeecccceeee----E------ecCCcccceeEEEEecCCCcEEE
Q 016032 15 VIRYHS-RRVTCLEFHPTNNHILL--SGDKKGQVGVWDFYKVSEKI----V------YGNIHSCIVNNIRFNPTNDGTVY 81 (396)
Q Consensus 15 ~~~~h~-~~v~~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~----~------~~~~~~~~v~~~~~~~~~~~~l~ 81 (396)
.++-|. -+|..+..++|+ .+.+ ..+.+-.|..||+.+-.... . ..........++.|+|.-....+
T Consensus 94 t~~v~k~~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 94 TFKVEKEIPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred ceeeeccccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence 334443 356666667775 3333 23334468899987632211 1 11123345677889987556677
Q ss_pred EEeCCCeEEEEECCCCccc-ceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecC
Q 016032 82 AASSDGTVSCTDLETGLAL-SLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRK 160 (396)
Q Consensus 82 s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 160 (396)
.+..|+.|++..+...... ..+... ...++++|+|.|..+++|...|.+.-|-..-.............
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p~t----------~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e 242 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFPVT----------NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE 242 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccCcc----------cceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC
Confidence 7888999998876543221 111111 23889999999999999999999988876543211111111122
Q ss_pred CccEEEEEeccCCCCEEEE
Q 016032 161 GSKVVGLHCNPIQPELLLS 179 (396)
Q Consensus 161 ~~~i~~~~~~~~~~~~l~~ 179 (396)
...|.+++|.. ...++++
T Consensus 243 ~yrvl~v~Wl~-t~eflvv 260 (1405)
T KOG3630|consen 243 NYRVLSVTWLS-TQEFLVV 260 (1405)
T ss_pred CcceeEEEEec-ceeEEEE
Confidence 45799999987 4455544
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.01 E-value=1.2 Score=42.48 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=51.9
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEeeccc----------cee--e-eE-------ecCCcccceeEEEEecCC--Cc
Q 016032 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYK----------VSE--K-IV-------YGNIHSCIVNNIRFNPTN--DG 78 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~--~-~~-------~~~~~~~~v~~~~~~~~~--~~ 78 (396)
-.|..|.++|+| ++||..+..| |.|-.+.. +.. . .. +...+...|..+.|+|.. +.
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 468999999999 5677766655 44444432 111 0 01 112355689999999973 57
Q ss_pred EEEEEeCCCeEEEEECCCCc
Q 016032 79 TVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 79 ~l~s~~~dg~v~iwd~~~~~ 98 (396)
.|+.-..|+++|+||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888889999999997644
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.96 E-value=0.046 Score=30.07 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.8
Q ss_pred cceeEEEEecCCC--cEEEEEeCCCeEEEEECCCC
Q 016032 65 CIVNNIRFNPTND--GTVYAASSDGTVSCTDLETG 97 (396)
Q Consensus 65 ~~v~~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 97 (396)
+.|.++.|+|.++ ++|+.+-.-|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3689999998755 68888888999999999863
No 417
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.94 E-value=0.51 Score=37.25 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=67.7
Q ss_pred ceeEEEEecCCCcEEEEEeCCCeEEEEE--CCCCcccc---eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeE
Q 016032 66 IVNNIRFNPTNDGTVYAASSDGTVSCTD--LETGLALS---LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFL 140 (396)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd--~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 140 (396)
--+.++|+.+...+.++-+.+-+|.-|| ..+|.... .+.+.......+ -..-.+++..+|++.++.-..++|
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~---~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES---LEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC---CCCCcceEccCCcEEEEEecCcEE
Confidence 3467889877445556667788887787 66664322 122211100000 113345667789999999999999
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEE
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLS 179 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 179 (396)
...|+.+++.+.+.... ...+++++|--.+-..+++
T Consensus 236 ~~~dp~tGK~L~eiklP---t~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLP---TPQITSCCFGGKNLDILYV 271 (310)
T ss_pred EEECCCCCcEEEEEEcC---CCceEEEEecCCCccEEEE
Confidence 99999999887655333 2369999997523344444
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=95.77 E-value=1 Score=41.19 Aligned_cols=184 Identities=5% Similarity=-0.128 Sum_probs=82.9
Q ss_pred cEEEEEeCCC-----cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC--CeEEEEECCCCcccceeecC
Q 016032 34 HILLSGDKKG-----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD--GTVSCTDLETGLALSLMNVN 106 (396)
Q Consensus 34 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~ 106 (396)
.+++.|+.++ .+..||..+..-...........-.+++. -+ +...+.|+.+ .++..||..+++....-..+
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~-~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-AN-NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-EC-CEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 6778887653 46667776643222111001111112222 23 5666777653 35777887655432211111
Q ss_pred CCCCCCCCcceeeeEEEeCCCCCEEEEEecCC---eEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCC
Q 016032 107 PNGWHGPRTWRMLYGMDINPEKGVVLVADNFG---FLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND 183 (396)
Q Consensus 107 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 183 (396)
.. .. -.++ ..-++...+.|+.++ .+..||..+....... ......... +++.. ++.+.+.|+
T Consensus 351 ~~-----r~---~~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~m~~~r~~~-~~~~~--~~~IYv~GG-- 415 (480)
T PHA02790 351 KP-----RC---NPAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-STYYPHYKS-CALVF--GRRLFLVGR-- 415 (480)
T ss_pred CC-----Cc---ccEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC-CCCCccccc-eEEEE--CCEEEEECC--
Confidence 00 00 1111 122566667766543 4677888764322111 000010011 22222 556666664
Q ss_pred CcEEEEecCCCCCCCccccCCC-CCceeEEEEcCCCCEEEEEeCC-----CcEEEEEcccc
Q 016032 184 HFARIWDIRRLEAGSSLCDLPH-KRVVNSAYFSPSGSKILTTSQD-----NRLRIWDSIFG 238 (396)
Q Consensus 184 ~~i~~wd~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 238 (396)
.+.+||..+.+-. .+..+.. ......+.+ ++++.++|+.+ ..+..||..++
T Consensus 416 -~~e~ydp~~~~W~-~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 -NAEFYCESSNTWT-LIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -ceEEecCCCCcEe-EcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 4778887653321 1222211 112222222 67777888754 34666666543
No 419
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.66 E-value=0.83 Score=42.93 Aligned_cols=157 Identities=12% Similarity=0.143 Sum_probs=88.1
Q ss_pred cEEEEEeCCCcEEEeecccceeee------Eec-C--------------CcccceeEEEEecC-CCcEEEEEeCCCeEEE
Q 016032 34 HILLSGDKKGQVGVWDFYKVSEKI------VYG-N--------------IHSCIVNNIRFNPT-NDGTVYAASSDGTVSC 91 (396)
Q Consensus 34 ~~l~s~~~dg~i~iwd~~~~~~~~------~~~-~--------------~~~~~v~~~~~~~~-~~~~l~s~~~dg~v~i 91 (396)
.+|+.+. .+.|.||++....... .+. . .....|+.|....- +...|+.|..||.|.+
T Consensus 50 n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 50 NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 4566654 5799999986533211 100 0 01123444443221 1567888999999999
Q ss_pred EECCCCcc-ccee---------ecCCCCCCCCCcceeeeEEEeC--CCCCEEEEEecCCeEEEEeCCCCCCCccceeeec
Q 016032 92 TDLETGLA-LSLM---------NVNPNGWHGPRTWRMLYGMDIN--PEKGVVLVADNFGFLYLVDARTNSRSGEAILIHR 159 (396)
Q Consensus 92 wd~~~~~~-~~~~---------~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 159 (396)
|.+++-.. +... .....+.-.......+.+++++ ...++||+++....|.||-.............+.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~ 208 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQ 208 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccc
Confidence 97742100 0000 0000000001111247888888 7788899998888888776544211111111223
Q ss_pred CCccEEEEEeccCC--CC---EEEEeeCCCcEEEEec
Q 016032 160 KGSKVVGLHCNPIQ--PE---LLLSCGNDHFARIWDI 191 (396)
Q Consensus 160 ~~~~i~~~~~~~~~--~~---~l~~~~~d~~i~~wd~ 191 (396)
+...|.+|+|.+.+ +. .+++++-.|.+.+|++
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 44478999998732 22 7788889999999988
No 420
>PRK10115 protease 2; Provisional
Probab=95.61 E-value=2.3 Score=40.86 Aligned_cols=200 Identities=11% Similarity=0.005 Sum_probs=96.2
Q ss_pred CeEEEEecCCCCcEEEEEeCCC----cEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCC-----CeEEEE
Q 016032 22 RVTCLEFHPTNNHILLSGDKKG----QVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSD-----GTVSCT 92 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~v~iw 92 (396)
.+..+.|+|++..++++.+.+| .|++-|+.++..+..... .. -..++|.+++..++++...+ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-NV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-Cc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 4677899999954444444444 488889887653332211 11 15699999933344444322 367788
Q ss_pred ECCCCc--ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec---CCeEEEEeCCCCCCCccceeeecCCccEEEE
Q 016032 93 DLETGL--ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---FGFLYLVDARTNSRSGEAILIHRKGSKVVGL 167 (396)
Q Consensus 93 d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~ 167 (396)
++.++. ....+...... . ......+.++.+++..+. ++.+.+++................+ ....+
T Consensus 205 ~lgt~~~~d~lv~~e~~~~-------~-~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~ 275 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDT-------F-YVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEYSL 275 (686)
T ss_pred ECCCChhHCeEEEeeCCCC-------E-EEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEEEE
Confidence 888773 23333321111 0 123334557777665543 3578888854321111111222222 22222
Q ss_pred EeccCCCCEEEEeeC---CCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 016032 168 HCNPIQPELLLSCGN---DHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 168 ~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
. +. ...+++.... ...|...++........+........|..+.+. ...++++...+|.-+++-+.
T Consensus 276 ~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 276 D-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred E-eC-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 2 22 2333333222 123433444321111122111123467888887 33455666667765555443
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.46 E-value=1.7 Score=38.41 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=47.5
Q ss_pred eeeeeeecccccccceEEEEcCccchhhhhcCCCCCCCcceeeeccC----------------CcEEEe-ec-CCcEEEE
Q 016032 277 GRYISENYNGAALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPR----------------DDVLAS-GS-SRSIFIW 338 (396)
Q Consensus 277 g~~~~~~~~g~~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~l~s-g~-d~~i~iw 338 (396)
+++.+ ....-|.|.++|+.++..++..++-....+.-+....+. ..+|+. +- -|.|.||
T Consensus 319 ~~laA---~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW 395 (415)
T PF14655_consen 319 GRLAA---VTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVW 395 (415)
T ss_pred CCEEE---EEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEE
Confidence 55555 345668999999999998888776543332222111111 123443 55 7999999
Q ss_pred cCCCcceeeeccc
Q 016032 339 RPKEKSELVEQKE 351 (396)
Q Consensus 339 ~~~~~~~~~~~~~ 351 (396)
.+.+|..+..+..
T Consensus 396 ~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 396 SMRQGPRVAAFNV 408 (415)
T ss_pred ecCCCCEEEEEEe
Confidence 9999999887765
No 422
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.30 E-value=3 Score=40.33 Aligned_cols=117 Identities=15% Similarity=0.032 Sum_probs=67.8
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC--CCC---EEEEeeCCCcEEEEecCC
Q 016032 119 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI--QPE---LLLSCGNDHFARIWDIRR 193 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~---~l~~~~~d~~i~~wd~~~ 193 (396)
++....+.+...++.++.++.+...++...... ....+.....|.|+.++|. ..+ +++.|..+..+.+--.-.
T Consensus 490 ~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~--e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p 567 (1096)
T KOG1897|consen 490 ITIGVVSANASQVVVAGGGLALFYLEIEDGGLR--EVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP 567 (1096)
T ss_pred eEEEEEeecceEEEEecCccEEEEEEeecccee--eeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC
Confidence 444444555667888888788887777765521 1122333447999999974 333 788887766554433211
Q ss_pred CCCCCccccC---CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 194 LEAGSSLCDL---PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 194 ~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
.........+ .....|.-..|-.+..+|.++..||.+.-|-+..
T Consensus 568 d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 568 DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 1111111111 1233455555655788999999999987765543
No 423
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.09 E-value=1.6 Score=36.14 Aligned_cols=209 Identities=13% Similarity=0.123 Sum_probs=113.7
Q ss_pred eEEEEecCCCCcEEEEEeCCCcEEEeecc-----c-ce-eeeEecC--C--cccceeEEEEecCC-----------CcEE
Q 016032 23 VTCLEFHPTNNHILLSGDKKGQVGVWDFY-----K-VS-EKIVYGN--I--HSCIVNNIRFNPTN-----------DGTV 80 (396)
Q Consensus 23 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-----~-~~-~~~~~~~--~--~~~~v~~~~~~~~~-----------~~~l 80 (396)
-+-|+++|.+. +-++....+...+||.. . .. ....+.. + .....+.+.|+... ...+
T Consensus 25 ~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 57899999884 55555567889999997 1 11 2222210 1 23457778887541 1236
Q ss_pred EEEeCCCeEEEEECCCCcc---cceeecCCCCCCCCCcceeeeEEEeCC--CCCEEEEE-ecCCeEEEEeCCCCCCCcc-
Q 016032 81 YAASSDGTVSCTDLETGLA---LSLMNVNPNGWHGPRTWRMLYGMDINP--EKGVVLVA-DNFGFLYLVDARTNSRSGE- 153 (396)
Q Consensus 81 ~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~~g~i~i~d~~~~~~~~~- 153 (396)
+.+++||+|.-|...-+.. ...+..+... .+ .....+++.. .+.+|..+ -..++|.++|-.-......
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~g----avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QG----NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCC-Cc----ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence 7788999999998644333 1222222110 00 1134455543 35666555 4678999998654322110
Q ss_pred -cee--ee-----------cCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC---CCCCceeEEEEcC
Q 016032 154 -AIL--IH-----------RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHKRVVNSAYFSP 216 (396)
Q Consensus 154 -~~~--~~-----------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~i~~~~~~~ 216 (396)
... .. ...-.|+-..-.+ +...=+.|..-|.|-+||+. +..++.+ +.-.....|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~----G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN----GQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC----CcEEEEeccCCcccCCceeeeCh
Confidence 000 00 0000111111122 22222333345789999985 3444434 3334556777765
Q ss_pred ------CCCEEEEEeCCCcEEEEEcccccccC
Q 016032 217 ------SGSKILTTSQDNRLRIWDSIFGNLDS 242 (396)
Q Consensus 217 ------~~~~l~~~~~d~~i~iwd~~~~~~~~ 242 (396)
.+.+|+---.||+|..||..+++.+.
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence 56777766679999999999887644
No 424
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=1.3 Score=34.47 Aligned_cols=170 Identities=17% Similarity=0.147 Sum_probs=92.4
Q ss_pred cEEEEEeCC--CcEEEeecccceeeeEecCC----cccceeEEEEecCCCcEE-EEEeCCCeEEEEECCCCcccceeecC
Q 016032 34 HILLSGDKK--GQVGVWDFYKVSEKIVYGNI----HSCIVNNIRFNPTNDGTV-YAASSDGTVSCTDLETGLALSLMNVN 106 (396)
Q Consensus 34 ~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~ 106 (396)
.++.+.+.- ..|++||+.+++......-. ....++.+ ++.+ .-.=.+|.-..+|.++-+.+..+...
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~------gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~ 130 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL------GDYFYQLTWKEGVAFKYDADTLEELGRFSYE 130 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec------cceEEEEEeccceeEEEChHHhhhhcccccC
Confidence 566665543 35999999988766554321 11222221 2222 22345788889999998888887766
Q ss_pred CCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCcc---EEEEEeccCCCCEEEEeeCC
Q 016032 107 PNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSK---VVGLHCNPIQPELLLSCGND 183 (396)
Q Consensus 107 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~l~~~~~d 183 (396)
.+++ . ...++..|+.++....++.-|.++......... ...+.+ ++.+.|- ++.+.|-.-.+
T Consensus 131 GeGW----------g--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~V-T~~g~pv~~LNELE~V--dG~lyANVw~t 195 (262)
T COG3823 131 GEGW----------G--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQV-TDDGVPVSKLNELEWV--DGELYANVWQT 195 (262)
T ss_pred Ccce----------e--eecCCcceEeeCCceEEEecCHHHhhhcceEEE-EECCeecccccceeee--ccEEEEeeeee
Confidence 5542 2 344667788888888888888877554433322 111112 3344444 34444433333
Q ss_pred CcEEEEecCCCCCC---------Cccc-cCCCCCceeEEEEcCCC-CEEEEE
Q 016032 184 HFARIWDIRRLEAG---------SSLC-DLPHKRVVNSAYFSPSG-SKILTT 224 (396)
Q Consensus 184 ~~i~~wd~~~~~~~---------~~~~-~~~~~~~i~~~~~~~~~-~~l~~~ 224 (396)
..|...|..+++.. ..+. .-.+....+.+++.|++ +++++|
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33333333222111 0110 01245567889999976 555555
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.88 E-value=1.2 Score=39.45 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=87.4
Q ss_pred CcEEE-EEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCC-------CEEEEEecCCeEEEEeCCCC
Q 016032 77 DGTVY-AASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK-------GVVLVADNFGFLYLVDARTN 148 (396)
Q Consensus 77 ~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~~g~i~i~d~~~~ 148 (396)
..+|+ .++....+.-.|++.|+.+..+..+.. + -+.|.|.. ..-++|-.+..|.-.|.+..
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~~~dd----------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~ 547 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD----------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR 547 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEeecCCc----------c-eeecCCchhHHhcCccceEEeecccceEEeccccc
Confidence 44443 455566788889999998888876654 2 34455532 23445555666666677654
Q ss_pred CCCccceeeecCCccEEEEEecc---CCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEe
Q 016032 149 SRSGEAILIHRKGSKVVGLHCNP---IQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTS 225 (396)
Q Consensus 149 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 225 (396)
...... .......+--.|+. ....++++++..|.|++||--.......+. +....|..+..+.+|+++++.+
T Consensus 548 gNKi~v---~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 548 GNKIKV---VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred CCceee---eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEee
Confidence 311111 11111222222221 156789999999999999964323333332 4556789999999999988776
Q ss_pred CCCcEEEEEcc
Q 016032 226 QDNRLRIWDSI 236 (396)
Q Consensus 226 ~d~~i~iwd~~ 236 (396)
. ..+.+-|+.
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 4 478888875
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.86 E-value=2 Score=37.72 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=73.6
Q ss_pred CCeEEEEecCCCCcEEEEEe-----------CCC-cEEEeecccc--e--eeeEecCCcccceeEEEEecCCCcEEEEEe
Q 016032 21 RRVTCLEFHPTNNHILLSGD-----------KKG-QVGVWDFYKV--S--EKIVYGNIHSCIVNNIRFNPTNDGTVYAAS 84 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 84 (396)
.....|+|.++| +++++-. ..+ .|.+++-..+ . ....+.. .......+++.++ + |+++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~-G--lyV~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVG-G--VYVAT 88 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecC-C--EEEeC
Confidence 456789999999 5555532 223 6777754332 1 1223322 2345688999887 5 44444
Q ss_pred CCCeEEEEECCCC-----cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC-------------------CeE
Q 016032 85 SDGTVSCTDLETG-----LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-------------------GFL 140 (396)
Q Consensus 85 ~dg~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------------------g~i 140 (396)
.....++.+.... +....+..-.. ...........++|.|+|.+.++-+.. |.|
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~--~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGG--QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCC--CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 4443334454321 11111111111 000011227789999998876654421 334
Q ss_pred EEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee
Q 016032 141 YLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG 181 (396)
Q Consensus 141 ~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 181 (396)
.-++...... +. ..........++|+| +++++++-.
T Consensus 167 ~r~~pdg~~~--e~--~a~G~rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGKL--RV--VAHGFQNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred EEEecCCCeE--EE--EecCcCCCccceECC-CCCEEEEcc
Confidence 4444443221 11 111112356788888 777776644
No 427
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.80 E-value=1.5 Score=34.35 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=79.1
Q ss_pred cEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC---C---eEEEE---eCCC-
Q 016032 78 GTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---G---FLYLV---DART- 147 (396)
Q Consensus 78 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g---~i~i~---d~~~- 147 (396)
+.|+.+...+.|.+|++...........+.- ..|..+.++..|+++++--.+ . .+++| ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv--------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV--------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch--------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 4555556678899999985444333333222 338899999999999996322 2 45554 2221
Q ss_pred C-CCCc--------------------cceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC-CCccc--cC
Q 016032 148 N-SRSG--------------------EAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA-GSSLC--DL 203 (396)
Q Consensus 148 ~-~~~~--------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~--~~ 203 (396)
. .... +.+... ...++.+++..|..|++++.+ ++.+.+|.+..... ...+. .+
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEec
Confidence 0 0000 001111 123577889999777766654 46888888753221 11111 11
Q ss_pred -------CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEc
Q 016032 204 -------PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDS 235 (396)
Q Consensus 204 -------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 235 (396)
...-.+..+++ -+.++|..+ +-.++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 11223455666 456777776 446666654
No 428
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=1.3 Score=44.00 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=90.9
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEE--------eCCCCCEEEEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMD--------INPEKGVVLVA 134 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~ 134 (396)
|...-..+-+.|. -.... .+-|+.+.+|+++++.....+..-... |..+. |.|.=+++++-
T Consensus 77 ~~~~~~~mGiFpe-I~RaW-iTiDn~L~lWny~~~~e~~~~d~~sht---------Il~V~LvkPkpgvFv~~IqhlLvv 145 (1311)
T KOG1900|consen 77 NIECKTDMGIFPE-IGRAW-ITIDNNLFLWNYESDNELAEYDGLSHT---------ILKVGLVKPKPGVFVPEIQHLLVV 145 (1311)
T ss_pred Ccceeeeeccchh-hcceE-EEeCCeEEEEEcCCCCccccccchhhh---------heeeeeecCCCCcchhhhheeEEe
Confidence 3333344555555 22222 234788999999996655544322221 22222 33333445555
Q ss_pred ecCCeEEEEeCCCCCCCccc------eeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecC--CCC------C----
Q 016032 135 DNFGFLYLVDARTNSRSGEA------ILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR--RLE------A---- 196 (396)
Q Consensus 135 ~~~g~i~i~d~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~------~---- 196 (396)
...-.|.++-+.-....... +.....+..|+++.... +|+.|++|- ||. +|.+. ... +
T Consensus 146 aT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~-nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kic 221 (1311)
T KOG1900|consen 146 ATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE-NGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKIC 221 (1311)
T ss_pred cccceEEEEEEEeccccCcccccccceeeecCCceEEEEEecc-CCcEEEeec-CCC--EEEEEEeccCchhhccccccc
Confidence 55556666544332221111 22334466789999666 888777775 453 44331 000 0
Q ss_pred ----------CCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 197 ----------GSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 197 ----------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
+..+... .+..+|..++....-..+.+-+..|+|.+||+..
T Consensus 222 lt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 222 LTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1112222 4567999999998888999999999999999975
No 429
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.68 E-value=2.9 Score=37.05 Aligned_cols=152 Identities=13% Similarity=0.160 Sum_probs=85.5
Q ss_pred cCCCcEEEEEeCCCeEEEEECCCCcccc---eeecCCCCCCCCCcceeeeEEEeC---C-CCCEEEEEecCCeEEEEeCC
Q 016032 74 PTNDGTVYAASSDGTVSCTDLETGLALS---LMNVNPNGWHGPRTWRMLYGMDIN---P-EKGVVLVADNFGFLYLVDAR 146 (396)
Q Consensus 74 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~l~~~~~~g~i~i~d~~ 146 (396)
+++...|++|+..|.++||+...+.... .++..-. .+|..+..- + .....++.-.-..+.+|.+.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~--------~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~ 105 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK--------DPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS 105 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecC--------CcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence 3346799999999999999986543211 1111100 125555542 2 22333333555677778773
Q ss_pred CCCCC------c--cceeeecCCccEEEEEecc---CC-CCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEE
Q 016032 147 TNSRS------G--EAILIHRKGSKVVGLHCNP---IQ-PELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 214 (396)
Q Consensus 147 ~~~~~------~--~~~~~~~~~~~i~~~~~~~---~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~ 214 (396)
..... . .....|.-......+++-| .. ..+|.+-+.||.+.+|+-+.......+..+-.. ..+.|
T Consensus 106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP---gPl~Y 182 (418)
T PF14727_consen 106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP---GPLCY 182 (418)
T ss_pred ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC---cCeEE
Confidence 32111 1 1111222222233344333 12 468888999999999997643222222222233 34678
Q ss_pred cCCCCEEEEEeCCCcEEEEEcc
Q 016032 215 SPSGSKILTTSQDNRLRIWDSI 236 (396)
Q Consensus 215 ~~~~~~l~~~~~d~~i~iwd~~ 236 (396)
.+.-..|++++.+..+..|...
T Consensus 183 ~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 183 CPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eecCCEEEEecCceeEEEecHH
Confidence 8888889999988899988764
No 430
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.63 E-value=1.6 Score=40.58 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=63.9
Q ss_pred CcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEe--CCCCCEEEEEecCCeEEEEeCCC-----CC
Q 016032 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDI--NPEKGVVLVADNFGFLYLVDART-----NS 149 (396)
Q Consensus 77 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~g~i~i~d~~~-----~~ 149 (396)
+...++-+....+.|||...+.....-..... ..|..+.| .|+++.+++.+-...|.+|--.. ..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~--------~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSED--------DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCC--------CceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 44444444566899999998874433332111 23888888 46789999988889999885421 11
Q ss_pred CCcc---ceeeec-CCccEEEEEeccCCCCEEEEeeCCCcEEEEec
Q 016032 150 RSGE---AILIHR-KGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 191 (396)
Q Consensus 150 ~~~~---~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~ 191 (396)
+... .+.... ...+|.+..|.+ +|.+++.++ +.+.|+|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECC
Confidence 1111 111111 223788999998 776665543 57888874
No 431
>PHA03098 kelch-like protein; Provisional
Probab=94.60 E-value=2.5 Score=39.37 Aligned_cols=149 Identities=7% Similarity=-0.010 Sum_probs=70.0
Q ss_pred CcEEEEEeCCC------eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC-----CeEEEEeC
Q 016032 77 DGTVYAASSDG------TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF-----GFLYLVDA 145 (396)
Q Consensus 77 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~i~d~ 145 (396)
+..++.|+.++ .+..||..+.+....-..+. +.. ....+. -++..++.|+.+ ..+..||+
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-----~R~--~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY-----PRK--NPGVTV--FNNRIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCc-----ccc--cceEEE--ECCEEEEEeCCCCCEecceEEEEcC
Confidence 55666666542 46788887765532211110 110 011222 256677777654 35778888
Q ss_pred CCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCC------CcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCC
Q 016032 146 RTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGND------HFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGS 219 (396)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 219 (396)
.+....... ...... .-.+++.. ++.+++.|+.+ ..+..||..+.+-.. +........-.+++. .++.
T Consensus 366 ~~~~W~~~~-~lp~~r-~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~-~~~~ 439 (534)
T PHA03098 366 GESKWREEP-PLIFPR-YNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIY-HDGK 439 (534)
T ss_pred CCCceeeCC-CcCcCC-ccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEE-ECCE
Confidence 765432111 011111 11122222 56777777632 458889986543211 111111111112222 2566
Q ss_pred EEEEEeCCC--------cEEEEEcccccc
Q 016032 220 KILTTSQDN--------RLRIWDSIFGNL 240 (396)
Q Consensus 220 ~l~~~~~d~--------~i~iwd~~~~~~ 240 (396)
+++.|+.++ .+.+||..+++-
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCce
Confidence 667776432 378888876553
No 432
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.26 E-value=0.89 Score=40.08 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=60.2
Q ss_pred eeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCccc-ceeEEEEec----------------C
Q 016032 13 CAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSC-IVNNIRFNP----------------T 75 (396)
Q Consensus 13 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~----------------~ 75 (396)
...|......+.+|+.+|.+ ++.|+...=|.|.|+|+.++..+... +|-.+ .+.-+.... .
T Consensus 300 r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred EEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhhh-ccCccceEEEEEeecccccccccccccCCCCc
Confidence 34566677789999999998 68888877899999999887655544 22221 111111100 0
Q ss_pred CCc-EEEEEeCCCeEEEEECCCCcccceeecC
Q 016032 76 NDG-TVYAASSDGTVSCTDLETGLALSLMNVN 106 (396)
Q Consensus 76 ~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 106 (396)
... +++-+-.-|.|-||.+++|..+..+...
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 011 2344667899999999999887766543
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.26 E-value=1.5 Score=41.96 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=51.2
Q ss_pred ccEEEEEeccCCCCEEEEeeCCCcEEEEecCC-C---------CC---------CCccccCCCCCceeEEEEcCC---CC
Q 016032 162 SKVVGLHCNPIQPELLLSCGNDHFARIWDIRR-L---------EA---------GSSLCDLPHKRVVNSAYFSPS---GS 219 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~---------~~---------~~~~~~~~~~~~i~~~~~~~~---~~ 219 (396)
..|..+.++| ++.+++..+..|.. |-.+.. . +. ...+........|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688999999 99999888875544 433321 0 00 000111134457889999994 68
Q ss_pred EEEEEeCCCcEEEEEcccc
Q 016032 220 KILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 220 ~l~~~~~d~~i~iwd~~~~ 238 (396)
.|++-+.|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8999999999999999743
No 434
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.24 E-value=2.5 Score=39.50 Aligned_cols=115 Identities=9% Similarity=0.077 Sum_probs=71.2
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEe--cCCCcEEEEEeCCCeEEEEECCC---
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN--PTNDGTVYAASSDGTVSCTDLET--- 96 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~--- 96 (396)
...-+.-+.-+ ++.++-+....+.|||...+.......-...+.|.++.|. |+ ++.+++.+....|.++.-..
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d-~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD-GQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC-CCEEEEEEcCcEEEEEEccchhh
Confidence 44444455544 4444444455799999988764444322457899999996 55 78888888999999985421
Q ss_pred ------CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCC
Q 016032 97 ------GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDAR 146 (396)
Q Consensus 97 ------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~ 146 (396)
-..+..+..... +..+|.+..|.++|..++.++ +.+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~------T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSH------TPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecC------CCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 112222322111 112378888999987666553 577777643
No 435
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=1.1 Score=44.46 Aligned_cols=170 Identities=8% Similarity=0.052 Sum_probs=89.2
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEe-cCC------CcEEEEEeCCCeEEE
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN-PTN------DGTVYAASSDGTVSC 91 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~------~~~l~s~~~dg~v~i 91 (396)
|...=..+-+-|.=++. --+.|..+.+|+.+++.....+ .+-...|..+..- |.. =++++..+.--.|.+
T Consensus 77 ~~~~~~~mGiFpeI~Ra--WiTiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRA--WITIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVI 153 (1311)
T ss_pred Ccceeeeeccchhhcce--EEEeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEE
Confidence 44444455555653342 3345789999999986666555 4455556655532 220 223333333444555
Q ss_pred EECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEE--EeCCCCCC-----------------Cc
Q 016032 92 TDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL--VDARTNSR-----------------SG 152 (396)
Q Consensus 92 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i--~d~~~~~~-----------------~~ 152 (396)
+-+.-.+.......-...+.-......|.++....+|+.+++|- ||.|+- |....+-. ..
T Consensus 154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred EEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 54332211110000000011112224488998777787666554 453332 11111100 00
Q ss_pred cceeee-cCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCC
Q 016032 153 EAILIH-RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRR 193 (396)
Q Consensus 153 ~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~ 193 (396)
...... .+..+|..++... ..+++.+-+..++|.+||+..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~-SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDN-SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEecc-ccceeeeeccCceEEEEEccC
Confidence 111122 3455899999987 778899999999999999975
No 436
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.85 E-value=3.9 Score=35.28 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=54.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCC---CCEEEEEec-C----
Q 016032 66 IVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPE---KGVVLVADN-F---- 137 (396)
Q Consensus 66 ~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-~---- 137 (396)
..+.|+|.|+ +.++++ ...|.|++++ ..+.....+....... ......+..++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~--~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVF--ADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTB--TSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceeccccccc--ccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 4578999999 766665 5699999999 4444312211111111 111123889999995 334433322 1
Q ss_pred ----CeEEEEeCCCC--CC--Cccceee-e---cCCccEEEEEeccCCCCEEEEeeCC
Q 016032 138 ----GFLYLVDARTN--SR--SGEAILI-H---RKGSKVVGLHCNPIQPELLLSCGND 183 (396)
Q Consensus 138 ----g~i~i~d~~~~--~~--~~~~~~~-~---~~~~~i~~~~~~~~~~~~l~~~~~d 183 (396)
..|.-|..... .. ...+... . ........|+|.| ++.+.++.+..
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~ 134 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDG 134 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-T
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCC
Confidence 13433433322 00 0111111 1 1122567799999 88777766543
No 437
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.48 E-value=8.4 Score=37.86 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=48.0
Q ss_pred cCCeEEEEecCCC-----CcEEEEEeCCCcEEEeecccceeeeEec-CCcccceeEEEEecCC--C------cEEEEEeC
Q 016032 20 SRRVTCLEFHPTN-----NHILLSGDKKGQVGVWDFYKVSEKIVYG-NIHSCIVNNIRFNPTN--D------GTVYAASS 85 (396)
Q Consensus 20 ~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~------~~l~s~~~ 85 (396)
+..|.|+++.++. .++++.++.|+.+++..+.....+..+. ++-..++.++.+-+.. + -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4578899998864 3689999999999999998655544432 3445556665554321 1 24566766
Q ss_pred CCeEEEE
Q 016032 86 DGTVSCT 92 (396)
Q Consensus 86 dg~v~iw 92 (396)
.|.+.-+
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7765444
No 438
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.45 E-value=4.4 Score=35.59 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=71.6
Q ss_pred cEEEEEeccCCCCEEEEee-----------CCC-cEEEEecCCCC-CCCccccC-CCCCceeEEEEcCCCCEEEEEeCCC
Q 016032 163 KVVGLHCNPIQPELLLSCG-----------NDH-FARIWDIRRLE-AGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDN 228 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~-----------~d~-~i~~wd~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~ 228 (396)
....|+|.+ +++++++-. ..+ .|.+++-.+.. .......+ ........+++.+++ +++ ++..
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~- 90 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP- 90 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-
Confidence 456788888 777776643 122 66666543221 11111112 223346889999988 444 4444
Q ss_pred cEEEE-EcccccccC-CCcceeeccccc---ccCCceeEEeCCCCCCCceeeEeeeeeeeccc----------------c
Q 016032 229 RLRIW-DSIFGNLDS-PSREIVHSHDFN---RHLTPFRAEWDPKDPSESLAVIGRYISENYNG----------------A 287 (396)
Q Consensus 229 ~i~iw-d~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g----------------~ 287 (396)
.|..| |........ ....+....... .+..+..+.|.|+ |.+.+...+. .
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD---------G~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD---------GWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC---------CCEEEecccCCCceeccCCCccCcccc
Confidence 34444 443211111 111111111111 1222346777776 3222211100 0
Q ss_pred cccceEEEEcCccchhhhhcCCCCCCCcceeeeccCCcEEEeec
Q 016032 288 ALHPIDFIDITTGQLVAEVMDPNITTISPVNKLHPRDDVLASGS 331 (396)
Q Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~sg~ 331 (396)
..+.|.-++..+++. ..+ .........+ +|+|+|+++++-.
T Consensus 162 ~~g~i~r~~pdg~~~-e~~-a~G~rnp~Gl-~~d~~G~l~~tdn 202 (367)
T TIGR02604 162 LGGGLFRYNPDGGKL-RVV-AHGFQNPYGH-SVDSWGDVFFCDN 202 (367)
T ss_pred cCceEEEEecCCCeE-EEE-ecCcCCCccc-eECCCCCEEEEcc
Confidence 114566666654442 222 2223445566 8999999887744
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=93.22 E-value=0.54 Score=25.34 Aligned_cols=33 Identities=9% Similarity=0.322 Sum_probs=23.5
Q ss_pred eccccCCeEEEEecCCCCcEEEEEeCC--CcEEEe
Q 016032 16 IRYHSRRVTCLEFHPTNNHILLSGDKK--GQVGVW 48 (396)
Q Consensus 16 ~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~i~iw 48 (396)
+....+.-.+..|+|||..++.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556778899999998777777777 776666
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=93.13 E-value=5.4 Score=36.58 Aligned_cols=145 Identities=4% Similarity=-0.139 Sum_probs=66.4
Q ss_pred CcEEEEEeCCC-----eEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC--CeEEEEeCCCCC
Q 016032 77 DGTVYAASSDG-----TVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF--GFLYLVDARTNS 149 (396)
Q Consensus 77 ~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--g~i~i~d~~~~~ 149 (396)
+..++.|+.++ .+..||..++.....-..+.. .. -.+++ .-++...++|+.+ ..+..||..++.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~-----r~---~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP-----RL---YASGV-PANNKLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-----hh---cceEE-EECCEEEEECCcCCCCceEEEECCCCe
Confidence 45566776542 466788776553322211111 00 11111 2356666777653 357788876543
Q ss_pred CCccceeeecCCccEEEEEeccCCCCEEEEeeCCC---cEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeC
Q 016032 150 RSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH---FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQ 226 (396)
Q Consensus 150 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 226 (396)
..... ......... +++.. ++.+.+.|+.++ .+..||.++..-. ....+.....-.+++ .-++++.+.|+
T Consensus 343 W~~~~-~l~~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~-~~~~m~~~r~~~~~~-~~~~~IYv~GG- 415 (480)
T PHA02790 343 WVNMP-SLLKPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQ-FGPSTYYPHYKSCAL-VFGRRLFLVGR- 415 (480)
T ss_pred EEECC-CCCCCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEE-eCCCCCCccccceEE-EECCEEEEECC-
Confidence 21110 111111011 22222 677778877653 4677887653221 111111111111121 22566666663
Q ss_pred CCcEEEEEccccc
Q 016032 227 DNRLRIWDSIFGN 239 (396)
Q Consensus 227 d~~i~iwd~~~~~ 239 (396)
.+.+||..+.+
T Consensus 416 --~~e~ydp~~~~ 426 (480)
T PHA02790 416 --NAEFYCESSNT 426 (480)
T ss_pred --ceEEecCCCCc
Confidence 56778876544
No 441
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.09 E-value=5.3 Score=34.43 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=89.2
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCc------EEEeecccc----eeee-----EecCCccc-------ceeEEEEecCC
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQ------VGVWDFYKV----SEKI-----VYGNIHSC-------IVNNIRFNPTN 76 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~------i~iwd~~~~----~~~~-----~~~~~~~~-------~v~~~~~~~~~ 76 (396)
.-+.+..|.+.|++.+ +++-+.+|. +...++... ..+. .+...... ..-+|++.++
T Consensus 18 ~~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~- 95 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPD- 95 (326)
T ss_pred ccCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecC-
Confidence 4567889999976545 455566666 555555431 0010 11111111 3347888665
Q ss_pred CcEEEEEeCC------CeEEEEECCCCcccceeecCCCCC------CCCCcceeeeEEEeCCCCCEEEEEecC-----C-
Q 016032 77 DGTVYAASSD------GTVSCTDLETGLALSLMNVNPNGW------HGPRTWRMLYGMDINPEKGVVLVADNF-----G- 138 (396)
Q Consensus 77 ~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~~-----g- 138 (396)
+.++++.-.+ ..|..++.. |+....+..+..-. ........+-+|+++|+|+.|+++... +
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 7777777667 788888877 77766664433210 233444558899999999976665332 1
Q ss_pred ----------eEEEEeCCCCC-CCccce-eeec-----CCccEEEEEeccCCCCEEEE
Q 016032 139 ----------FLYLVDARTNS-RSGEAI-LIHR-----KGSKVVGLHCNPIQPELLLS 179 (396)
Q Consensus 139 ----------~i~i~d~~~~~-~~~~~~-~~~~-----~~~~i~~~~~~~~~~~~l~~ 179 (396)
.|..||..+.. ...+.. .... ....+..+.+.+ ++.+|+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLvL 231 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLVL 231 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEEE
Confidence 23445555422 222211 1111 345788899998 7776665
No 442
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.08 E-value=6.1 Score=35.14 Aligned_cols=151 Identities=11% Similarity=0.098 Sum_probs=87.0
Q ss_pred CCCCcEEEEEeCCCcEEEeecccceee---eEecCCcccceeEEEEe---cCCCcEEEEEeCCCeEEEEECCCCccc---
Q 016032 30 PTNNHILLSGDKKGQVGVWDFYKVSEK---IVYGNIHSCIVNNIRFN---PTNDGTVYAASSDGTVSCTDLETGLAL--- 100 (396)
Q Consensus 30 ~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~---~~~~~~l~s~~~dg~v~iwd~~~~~~~--- 100 (396)
+++...+++|+..|.++||+....... ..+...-..+|..+..- +......++.-.-..+.+|.+......
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 444457999999999999998654311 22223356788888753 221333344455777888887321110
Q ss_pred ------ceeecCCCCCCCCCcceeeeEEEeCC----C-CCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEe
Q 016032 101 ------SLMNVNPNGWHGPRTWRMLYGMDINP----E-KGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHC 169 (396)
Q Consensus 101 ------~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~ 169 (396)
..+..+.- ......+++-| . ..++.+-+.||.+.+++-+.......+ ..-.-...+.+
T Consensus 114 g~~~~L~~~yeh~l-------~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l----p~~llPgPl~Y 182 (418)
T PF14727_consen 114 GNQYQLELIYEHSL-------QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL----PDFLLPGPLCY 182 (418)
T ss_pred CcEEEEEEEEEEec-------ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc----CCCCCCcCeEE
Confidence 11111100 01133333322 2 367778899999999997763311111 11112335777
Q ss_pred ccCCCCEEEEeeCCCcEEEEecC
Q 016032 170 NPIQPELLLSCGNDHFARIWDIR 192 (396)
Q Consensus 170 ~~~~~~~l~~~~~d~~i~~wd~~ 192 (396)
.+ ..+.|++++.+..|.-|...
T Consensus 183 ~~-~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 183 CP-RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ee-cCCEEEEecCceeEEEecHH
Confidence 87 77888898888889888753
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.86 E-value=1.7 Score=34.82 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=50.3
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcc----ccC--------CCCCceeEEEEcCCCCEEEEEeCCCcE
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSL----CDL--------PHKRVVNSAYFSPSGSKILTTSQDNRL 230 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~----~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i 230 (396)
++..+.. ++.++++.+.+|.+++||+.+.+....- ..+ .....|..+.++.+|.-|++-+ +|..
T Consensus 14 ~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 14 PVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS 89 (219)
T ss_pred ceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence 4444444 6688999999999999999875532111 111 2446788899998998877765 5788
Q ss_pred EEEEcccc
Q 016032 231 RIWDSIFG 238 (396)
Q Consensus 231 ~iwd~~~~ 238 (396)
..|+..-+
T Consensus 90 y~y~~~L~ 97 (219)
T PF07569_consen 90 YSYSPDLG 97 (219)
T ss_pred EEeccccc
Confidence 89987643
No 444
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=4.2 Score=40.75 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=28.0
Q ss_pred CCeEEEEecCCCCcEEEEEeCCCcEEEeecccceee
Q 016032 21 RRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEK 56 (396)
Q Consensus 21 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 56 (396)
.....++|+|.. .++|.|...|.|.++-...-+..
T Consensus 36 ~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 36 STPSALAFDPTQ-GLLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCCcceeecccc-ceEEEEEecccEEEecccceEEE
Confidence 356678999987 79999999999999987654433
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=5.5 Score=35.77 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=20.4
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEe
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWD 190 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd 190 (396)
.|..+..++ .|..++..+.+|.+..+=
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEc
Confidence 467778888 888888888888766553
No 446
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.47 E-value=0.9 Score=42.42 Aligned_cols=69 Identities=26% Similarity=0.222 Sum_probs=41.9
Q ss_pred CCCEEEEeeCCCcEEEEecCCCC-CCC--------------ccccC---------CCCCceeEEEEcC----CCCEEEEE
Q 016032 173 QPELLLSCGNDHFARIWDIRRLE-AGS--------------SLCDL---------PHKRVVNSAYFSP----SGSKILTT 224 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~~~-~~~--------------~~~~~---------~~~~~i~~~~~~~----~~~~l~~~ 224 (396)
++..++.+..||.+......... ... .+..+ .....+..+++++ +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 55777778888888877765311 000 00000 0123456666666 77899999
Q ss_pred eCCCcEEEEEccccccc
Q 016032 225 SQDNRLRIWDSIFGNLD 241 (396)
Q Consensus 225 ~~d~~i~iwd~~~~~~~ 241 (396)
+.|+.+|+||+.++.++
T Consensus 237 ~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCL 253 (547)
T ss_dssp ETTSEEEEEETTTTCEE
T ss_pred eCCCeEEEEECCCCeEE
Confidence 99999999999999883
No 447
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.43 E-value=3 Score=29.96 Aligned_cols=111 Identities=10% Similarity=0.081 Sum_probs=66.4
Q ss_pred EeCCCCCEEEEEecCCeEEEEeCCCCCCCc----cceeeecCCccEEEEEeccC----CCCEEEEeeCCCcEEEEecCCC
Q 016032 123 DINPEKGVVLVADNFGFLYLVDARTNSRSG----EAILIHRKGSKVVGLHCNPI----QPELLLSCGNDHFARIWDIRRL 194 (396)
Q Consensus 123 ~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~----~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~i~~wd~~~~ 194 (396)
.|......|++++..|.|.+++........ ..+....-...|++++-.+. ....|+.|+. ..|..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 355556678999999999999987543221 11122223336777766553 3457777764 68999999754
Q ss_pred CCCCccccCCCCCceeEEEEcC---CCCEEEEEeCCCcEEEEEccc
Q 016032 195 EAGSSLCDLPHKRVVNSAYFSP---SGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 195 ~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~ 237 (396)
.. .+. ..-...|+++.+-. ...-|+..+.+..|.-||...
T Consensus 84 ~d--~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 84 SD--LFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred ch--hhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 33 222 23446677777643 222344444466777777653
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.33 E-value=0.031 Score=48.62 Aligned_cols=146 Identities=17% Similarity=0.096 Sum_probs=93.6
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEE-EEecCCeEE
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVL-VADNFGFLY 141 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~ 141 (396)
+-.......|-|. +.-++.++.+..|..||-. ++.......+. ....++|..++..++ .+-..+.+.
T Consensus 33 alv~pi~~~w~~e-~~nlavaca~tiv~~YD~a-gq~~le~n~tg----------~aldm~wDkegdvlavlAek~~piy 100 (615)
T KOG2247|consen 33 ALVGPIIHRWRPE-GHNLAVACANTIVIYYDKA-GQVILELNPTG----------KALDMAWDKEGDVLAVLAEKTGPIY 100 (615)
T ss_pred hccccceeeEecC-CCceehhhhhhHHHhhhhh-cceecccCCch----------hHhhhhhccccchhhhhhhcCCCee
Confidence 4444556678888 5557777778888888844 44444333222 256778887776554 456778999
Q ss_pred EEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCC-CCCceeEEEEcCCCCE
Q 016032 142 LVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLP-HKRVVNSAYFSPSGSK 220 (396)
Q Consensus 142 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 220 (396)
+||+.+..... +-....+ .-.-+.|++ ....++.+...+.+.+++..+.. .+...+ |...++++++.+.+..
T Consensus 101 lwd~n~eytqq-LE~gg~~--s~sll~wsK-g~~el~ig~~~gn~viynhgtsR---~iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 101 LWDVNSEYTQQ-LESGGTS--SKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSR---RIIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred echhhhhhHHH-HhccCcc--hHHHHhhcc-CCccccccccccceEEEeccchh---hhhhhcccccceeEEEeccccee
Confidence 99998743221 1011111 122377888 77788888889999999986533 233345 8889999999997754
Q ss_pred EEEEeCCC
Q 016032 221 ILTTSQDN 228 (396)
Q Consensus 221 l~~~~~d~ 228 (396)
+. ++.|.
T Consensus 174 il-~dcd~ 180 (615)
T KOG2247|consen 174 IL-CDCDN 180 (615)
T ss_pred ee-cCcHH
Confidence 43 33343
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.31 E-value=1.1 Score=35.90 Aligned_cols=67 Identities=6% Similarity=0.120 Sum_probs=47.1
Q ss_pred eCCCCCEEEEEecCCeEEEEeCCCCCCCcccee----ee-------cCCccEEEEEeccCCCCEEEEeeCCCcEEEEecC
Q 016032 124 INPEKGVVLVADNFGFLYLVDARTNSRSGEAIL----IH-------RKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIR 192 (396)
Q Consensus 124 ~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~----~~-------~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 192 (396)
+..++.++++-+.+|.+++||+.+.+....... .. .....|..+.+.. +|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccc
Confidence 455788999999999999999998765443311 11 2344677888886 777666655 4778888763
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=4.5 Score=31.61 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=57.6
Q ss_pred CcEEEEEeC--CCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCC-EEEEEecCCeEEEEeCCCCCCCcc
Q 016032 77 DGTVYAASS--DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKG-VVLVADNFGFLYLVDARTNSRSGE 153 (396)
Q Consensus 77 ~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~i~d~~~~~~~~~ 153 (396)
+.++.+.+. ...|++||+.+++.+......+...-+-. + ..-+. +....-.+|.-..+|..+.+....
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEG----i-----t~~gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEG----I-----TKLGDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccc----e-----eeccceEEEEEeccceeEEEChHHhhhhcc
Confidence 566666654 34699999999998877666532211100 1 11122 233345678888899888665543
Q ss_pred ceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC
Q 016032 154 AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 196 (396)
Q Consensus 154 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 196 (396)
. ...+.-..++.. +.-|+.+....+++.-|..+...
T Consensus 127 ~----~y~GeGWgLt~d---~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 127 F----SYEGEGWGLTSD---DKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred c----ccCCcceeeecC---CcceEeeCCceEEEecCHHHhhh
Confidence 2 222234455543 33355555556777777654433
No 451
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.09 E-value=3.3 Score=29.73 Aligned_cols=126 Identities=11% Similarity=0.108 Sum_probs=69.4
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcccccccCC-CcceeecccccccCCce-eEEeCCCCCCCceeeEeeeeeeeccccc
Q 016032 211 SAYFSPSGSKILTTSQDNRLRIWDSIFGNLDSP-SREIVHSHDFNRHLTPF-RAEWDPKDPSESLAVIGRYISENYNGAA 288 (396)
Q Consensus 211 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 288 (396)
.-.|......|++++.-|.|.|++......... ....+....+++....+ .-.+.|......+.+ +.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~Lli-----------Gt 71 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLI-----------GT 71 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEE-----------ec
Confidence 345666666788888899999998765443221 11112222333333322 123444332222222 33
Q ss_pred ccceEEEEcCccchhhhhcCCCCCCCccee--eecc-CCcEEEeecCCcEEEEcCCCcceeeec
Q 016032 289 LHPIDFIDITTGQLVAEVMDPNITTISPVN--KLHP-RDDVLASGSSRSIFIWRPKEKSELVEQ 349 (396)
Q Consensus 289 d~~i~vwd~~~~~~~~~~~~~~~~~i~~~~--~~~~-~~~~l~sg~d~~i~iw~~~~~~~~~~~ 349 (396)
...|..||+....-+..-.-+ ..+.++. .+.. ..++++.|++..|.-+|.+-.+....+
T Consensus 72 ~t~llaYDV~~N~d~Fyke~~--DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFYKEVP--DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cceEEEEEcccCchhhhhhCc--cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 456889999876655432222 3344331 2333 457777888899999998777666554
No 452
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=6.2 Score=32.69 Aligned_cols=197 Identities=13% Similarity=0.072 Sum_probs=115.4
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcc-cceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHS-CIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
.+-+..+.++.+ +...+..+.-++|.|+.+.........-.. +--.++..+ +++...+..|.-+.+.|+.+.+
T Consensus 86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs---Gn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS---GNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec---CCEEEEeeccCcEEEEECCCCC
Confidence 345566777653 455666677799999998776655533233 334555555 7788888866667788887654
Q ss_pred ccc---eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCC
Q 016032 99 ALS---LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPE 175 (396)
Q Consensus 99 ~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 175 (396)
... ....+... ...++. .|++-..+..++-+.+.|+....... ++.....+..+.++..++ +..
T Consensus 160 sP~lagrya~~~~d---------~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsd-nr~ 226 (370)
T COG5276 160 SPQLAGRYALPGGD---------THDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSD-NRA 226 (370)
T ss_pred CceeeeeeccCCCC---------ceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecC-Cee
Confidence 322 22211110 123333 36677778889999999998765442 112222233677887776 444
Q ss_pred EEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 176 LLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 176 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
+++.. +--+.+-|....+....+-......++.--.+.-.+++......+.-+.+-|+.+
T Consensus 227 y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 227 YLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 44443 3457777776655444444333333322212333566777777777777777754
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.65 E-value=9.9 Score=34.26 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=43.2
Q ss_pred CccceeeeccccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeE--e----cCCcccceeEEEEecC
Q 016032 9 DQVNCAVIRYHSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIV--Y----GNIHSCIVNNIRFNPT 75 (396)
Q Consensus 9 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~----~~~~~~~v~~~~~~~~ 75 (396)
....+..+-..-..-+.|+|.|++ ++|++--..|.|++++..+...... + ..........|+++|+
T Consensus 18 ~~f~~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 18 ENFDKKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCcEEEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 333445565566778999999998 6666654469999998654432111 1 0113567899999987
No 454
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.55 E-value=1 Score=39.32 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=96.7
Q ss_pred CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeee-EEEeCCCCCEEEEEecCCe
Q 016032 61 NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLY-GMDINPEKGVVLVADNFGF 139 (396)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~g~ 139 (396)
......|..+-..|+ ++.++.-+. ..+.++++.+...... +.-........ ..|. ++..-..|..+++++.||.
T Consensus 217 ~~~~~~v~qllL~Pd-g~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~--~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 217 SVPFSDVSQLLLTPD-GKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSR--HQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred CCCccchHhhEECCC-CCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchH--HHHHHHHHHHhCceeEEEEcCCCc
Confidence 345567888889999 888777664 6788998876543222 11111000000 1122 2223345677888999998
Q ss_pred EEEE-eCCCCCCC-cccee-eecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEEcC
Q 016032 140 LYLV-DARTNSRS-GEAIL-IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYFSP 216 (396)
Q Consensus 140 i~i~-d~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~ 216 (396)
|.-| |.+..... ..... ..-.+..+..+.-.. +.+-+++-+..|++.++.....+. .+.. ..-..+.-+++||
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~--lL~~-~~~~~~~~~~~Sp 367 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKL--LLFE-RAYQAPQLVAMSP 367 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcc--eehh-hhhcCcceeeeCc
Confidence 8766 55543321 11111 111122333333222 455677788888888887543221 2211 1223567789999
Q ss_pred CCCEEEEEeCCCcEEEEEcccccc
Q 016032 217 SGSKILTTSQDNRLRIWDSIFGNL 240 (396)
Q Consensus 217 ~~~~l~~~~~d~~i~iwd~~~~~~ 240 (396)
++.+|++-. .|.++++.+++...
T Consensus 368 ~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 368 NQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred ccchheeec-CCceEEEEecCCCC
Confidence 999988754 67899999886553
No 455
>PRK13684 Ycf48-like protein; Provisional
Probab=91.50 E-value=8.6 Score=33.28 Aligned_cols=158 Identities=10% Similarity=0.009 Sum_probs=81.5
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEE-eecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGV-WDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
.+.+.++.+.|++ .+++++. .|.+.. ++-. ++.-......-...++++.+.++ +..++++ ..|.+++=..+.+.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~-g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPD-GNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCC-eEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCC-CCEEEEe-cCCEEEEccCCCCC
Confidence 3568889999987 5565554 465443 2221 11111122335568899999998 6666554 46766532334443
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 178 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 178 (396)
.-.....+.. .....+.++.+.+++..++++ .+|.+.. ....++.-...............+.+.. ++..++
T Consensus 247 sW~~~~~~~~-----~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~~~ 318 (334)
T PRK13684 247 SWSKPIIPEI-----TNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKGFV 318 (334)
T ss_pred ccccccCCcc-----ccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeC-CCceEE
Confidence 3222211100 011227788898887755544 5565543 2333222211110011122577777775 455555
Q ss_pred EeeCCCcEEEEec
Q 016032 179 SCGNDHFARIWDI 191 (396)
Q Consensus 179 ~~~~d~~i~~wd~ 191 (396)
.+..|.|.-|+-
T Consensus 319 -~G~~G~il~~~~ 330 (334)
T PRK13684 319 -LGQRGVLLRYVG 330 (334)
T ss_pred -ECCCceEEEecC
Confidence 446688877763
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.90 E-value=15 Score=34.86 Aligned_cols=158 Identities=15% Similarity=0.075 Sum_probs=76.2
Q ss_pred cCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeee--EecCCcccceeEEEEecCCCcEEEEEeCCCeEE-EEECCC
Q 016032 20 SRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKI--VYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVS-CTDLET 96 (396)
Q Consensus 20 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~-iwd~~~ 96 (396)
.+.+-.+.|+.+. -|++-..+|+++||++....... .........|..+.|..+ |-.+++. +|.+. +-+...
T Consensus 83 ~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~-GVavlt~--~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 83 HGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN-GVAVLTV--SGQVILINGVEE 157 (829)
T ss_pred CCCeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC-ceEEEec--CCcEEEEcCCCc
Confidence 3488899999886 47778899999999987543322 111122334555555544 4333333 34443 333332
Q ss_pred Ccccceeec-CCCCCCCCCcceeeeEEEeCCCC---CEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC
Q 016032 97 GLALSLMNV-NPNGWHGPRTWRMLYGMDINPEK---GVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 97 ~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 172 (396)
.. ...+.. +... .. -.|....+++ ..++-....--..++....... ...........+..+..+|
T Consensus 158 ~~-~~~~~diP~~~-~~------~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~--q~~~~~~~~~~~~ki~VS~- 226 (829)
T KOG2280|consen 158 PK-LRKMPDIPYNE-LP------KSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRV--QLHALSWPNSSVVKISVSP- 226 (829)
T ss_pred ch-hhhCCCCCCcc-CC------CcceeEecCCCcceeEEeechhhhhcccceecccc--cccccCCCCceEEEEEEcC-
Confidence 21 111111 1111 00 1111111221 1111111000011111111111 0111111123588899999
Q ss_pred CCCEEEEeeCCCcEEEEecCC
Q 016032 173 QPELLLSCGNDHFARIWDIRR 193 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~ 193 (396)
+..+|+.-...|.|.+-++..
T Consensus 227 n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 227 NRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred CcceEEEEecCCcEEEEecch
Confidence 889999999999999988753
No 457
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.66 E-value=12 Score=33.25 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=72.4
Q ss_pred eeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCcccee-eecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCC
Q 016032 118 MLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAIL-IHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEA 196 (396)
Q Consensus 118 ~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 196 (396)
.|.++.|++|.+.+++--.+..|.+++....+....... .......|....|.. + .-+|..+.. -+-+|-......
T Consensus 68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~~-G~e~y~v~pekr 144 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS-S-TEIAFITDQ-GIEFYQVLPEKR 144 (657)
T ss_pred ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec-C-eeEEEEecC-CeEEEEEchhhh
Confidence 499999999999999999999999998854333222212 223334599999986 3 445555443 366665543222
Q ss_pred CCcccc-CCCCCceeEEEEcCCCCEEEEEe--CCCcEEEEEccccc
Q 016032 197 GSSLCD-LPHKRVVNSAYFSPSGSKILTTS--QDNRLRIWDSIFGN 239 (396)
Q Consensus 197 ~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~ 239 (396)
.++. ..++..|+-..|.++-+.++.++ ..+++.=+-++++.
T Consensus 145 --slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 145 --SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred --hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 1211 14677788888888777654443 34444445444443
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.22 E-value=0.057 Score=47.07 Aligned_cols=149 Identities=9% Similarity=0.075 Sum_probs=95.2
Q ss_pred ccCCeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCc
Q 016032 19 HSRRVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGL 98 (396)
Q Consensus 19 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 98 (396)
|-..-....|-|.+.. ++.++.+..+..||-........ ..++....++|..++...++.+-..+.+.+||+.+..
T Consensus 33 alv~pi~~~w~~e~~n-lavaca~tiv~~YD~agq~~le~---n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHN-LAVACANTIVIYYDKAGQVILEL---NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred hccccceeeEecCCCc-eehhhhhhHHHhhhhhcceeccc---CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 3344455677887755 67777777888888654332222 2456677888988744555667778999999998643
Q ss_pred ccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEE
Q 016032 99 ALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 178 (396)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 178 (396)
.. .+...... . -.-+.|++....++.+...|.+.+++..+..... ....|.-.++++++.+ . ++.+
T Consensus 109 tq-qLE~gg~~------s--~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~l-E-d~vi 174 (615)
T KOG2247|consen 109 TQ-QLESGGTS------S--KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTL-E-DYVI 174 (615)
T ss_pred HH-HHhccCcc------h--HHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecc-c-ceee
Confidence 32 22211110 0 1126688888899999999999999988765432 2233444789999998 4 3444
Q ss_pred EeeCCCc
Q 016032 179 SCGNDHF 185 (396)
Q Consensus 179 ~~~~d~~ 185 (396)
.++.|..
T Consensus 175 l~dcd~~ 181 (615)
T KOG2247|consen 175 LCDCDNT 181 (615)
T ss_pred ecCcHHH
Confidence 4444443
No 459
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=90.18 E-value=22 Score=35.81 Aligned_cols=143 Identities=12% Similarity=0.143 Sum_probs=79.8
Q ss_pred cEEEEEeC---------CCcEEEeeccc-----c------eeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEE
Q 016032 34 HILLSGDK---------KGQVGVWDFYK-----V------SEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTD 93 (396)
Q Consensus 34 ~~l~s~~~---------dg~i~iwd~~~-----~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 93 (396)
.+|+.|.. -|.+.|+|+-. + +....+.....++|..++=- ..+|+++. ...|.+|+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQ-GQKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEcc-CcEEEEEE
Confidence 36777643 48899999843 1 12223334567788887754 34666655 45799999
Q ss_pred CCC-CcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccC
Q 016032 94 LET-GLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 94 ~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 172 (396)
++. ...+..--.... ++-.....=.++|+.|.--..|.+.-.........+.......-.+.++.|.-
T Consensus 1123 l~r~~~ligVaFiD~~----------~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLV- 1191 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLP----------LYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLV- 1191 (1366)
T ss_pred eccCCcceeeEEeccc----------eeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEE-
Confidence 944 333322111111 23333333456777777666666665544322222222222233577777765
Q ss_pred CCC--EEEEeeCCCcEEEEec
Q 016032 173 QPE--LLLSCGNDHFARIWDI 191 (396)
Q Consensus 173 ~~~--~l~~~~~d~~i~~wd~ 191 (396)
++. .++++..++.|.+|-.
T Consensus 1192 dg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1192 DGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred cCCeeEEEEEcCCCcEEEEEe
Confidence 333 5777788999998865
No 460
>PLN02193 nitrile-specifier protein
Probab=89.91 E-value=15 Score=33.55 Aligned_cols=110 Identities=15% Similarity=0.041 Sum_probs=50.7
Q ss_pred CcEEEEEeCC-----CeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC-----eEEEEeCC
Q 016032 77 DGTVYAASSD-----GTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG-----FLYLVDAR 146 (396)
Q Consensus 77 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-----~i~i~d~~ 146 (396)
+.+++.|+.+ ..+.+||+.+.+-...-.....+ .+.. -.+++. -++++++.|+.++ .+..||+.
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P--~~R~---~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~ 302 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGP--TPRS---FHSMAA-DEENVYVFGGVSATARLKTLDSYNIV 302 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCC--CCcc---ceEEEE-ECCEEEEECCCCCCCCcceEEEEECC
Confidence 5566666654 35778888776543221111000 0010 112222 2455666665443 46778877
Q ss_pred CCCCCcccee--eecCCccEEEEEeccCCCCEEEEeeCC----CcEEEEecCCCC
Q 016032 147 TNSRSGEAIL--IHRKGSKVVGLHCNPIQPELLLSCGND----HFARIWDIRRLE 195 (396)
Q Consensus 147 ~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~ 195 (396)
+......... ........ .++.. ++.+++.++.+ ..+.+||+.+.+
T Consensus 303 t~~W~~~~~~~~~~~~R~~~-~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 303 DKKWFHCSTPGDSFSIRGGA-GLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred CCEEEeCCCCCCCCCCCCCc-EEEEE--CCcEEEEECCCCCccCceEEEECCCCE
Confidence 6432111000 00000011 12222 45677776654 458899987643
No 461
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.45 E-value=2 Score=23.42 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=22.8
Q ss_pred CCCCcEEEEEeCCCcEEEeecccceeeeEec
Q 016032 30 PTNNHILLSGDKKGQVGVWDFYKVSEKIVYG 60 (396)
Q Consensus 30 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 60 (396)
|++.+++++...++.|.++|..+......+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5665566666678899999998877666654
No 462
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.12 E-value=15 Score=32.20 Aligned_cols=205 Identities=15% Similarity=0.145 Sum_probs=104.7
Q ss_pred EEEecCCC--CcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEe----cCCCcE--EEEEe-CC---CeEEEE
Q 016032 25 CLEFHPTN--NHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFN----PTNDGT--VYAAS-SD---GTVSCT 92 (396)
Q Consensus 25 ~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~--l~s~~-~d---g~v~iw 92 (396)
+|-.+|.. ..+++...+++-+.+||+...... .+.. +.++.+..- -. +.. |+.++ .+ .+|++|
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq-~~~~---Gr~NNVDvrygf~l~-g~~vDlavas~R~~g~n~l~~f 132 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQ-SLPV---GRPNNVDVRYGFPLN-GKTVDLAVASDRSDGRNSLRLF 132 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS-EEE-EE-S---S-EEEEEEEEEEEET-TEEEEEEEEEE-CCCT-EEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCCcEEE-eecC---CCcceeeeecceecC-CceEEEEEEecCcCCCCeEEEE
Confidence 34445432 146777788889999999865443 3322 233333321 12 222 34443 32 479999
Q ss_pred ECCCCc-ccceeecCCCCCCCCCcceeeeEEEe--CC-CCC-EEEEEecCCeEEEEeCCC---CCCCccceeeecCCccE
Q 016032 93 DLETGL-ALSLMNVNPNGWHGPRTWRMLYGMDI--NP-EKG-VVLVADNFGFLYLVDART---NSRSGEAILIHRKGSKV 164 (396)
Q Consensus 93 d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~-~l~~~~~~g~i~i~d~~~---~~~~~~~~~~~~~~~~i 164 (396)
.+.... .+..+....... ......++.+|+ ++ ++. +.++...+|.+..|-+.. +....++.+.......+
T Consensus 133 ~id~~~g~L~~v~~~~~p~--~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~ 210 (381)
T PF02333_consen 133 RIDPDTGELTDVTDPAAPI--ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQP 210 (381)
T ss_dssp EEETTTTEEEE-CBTTC-E--E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-E
T ss_pred EecCCCCcceEcCCCCccc--ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcc
Confidence 886321 222221111110 011122556665 44 344 556677889888887753 22223333444445578
Q ss_pred EEEEeccCCCCEEEEeeCCCcEEEEecCCCCC--CCccccC---CCCCceeEEEEcC--CC--CEEEEEeCCCcEEEEEc
Q 016032 165 VGLHCNPIQPELLLSCGNDHFARIWDIRRLEA--GSSLCDL---PHKRVVNSAYFSP--SG--SKILTTSQDNRLRIWDS 235 (396)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~---~~~~~i~~~~~~~--~~--~~l~~~~~d~~i~iwd~ 235 (396)
..+.... ....|+.+-++.-|+-|+..-... ...+... .....|..|++-. ++ -+|++.-.+++..+|+.
T Consensus 211 EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 211 EGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred eEEEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 8888887 777888998988888888753221 1222111 2345677777753 33 34455556788999998
Q ss_pred cc
Q 016032 236 IF 237 (396)
Q Consensus 236 ~~ 237 (396)
+.
T Consensus 290 ~~ 291 (381)
T PF02333_consen 290 EG 291 (381)
T ss_dssp ST
T ss_pred CC
Confidence 63
No 463
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.01 E-value=11 Score=30.66 Aligned_cols=140 Identities=13% Similarity=0.118 Sum_probs=74.0
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC---CeEEEEeCCCCC---CCccceeeecCCc
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---GFLYLVDARTNS---RSGEAILIHRKGS 162 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~i~d~~~~~---~~~~~~~~~~~~~ 162 (396)
-.+||+.+++... +....+.+ ..+-.+.++|+.+.+|+.. ..+++++..... ...+........-
T Consensus 48 s~~yD~~tn~~rp-l~v~td~F--------CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTF--------CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGR 118 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCc--------ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCC
Confidence 3478888876532 22222221 3344577899999988642 357888865411 1100000011122
Q ss_pred cEEEEEeccCCCCEEEEeeCCC-cEEEEecCCCCC-CCccccCC------CCCceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 016032 163 KVVGLHCNPIQPELLLSCGNDH-FARIWDIRRLEA-GSSLCDLP------HKRVVNSAYFSPSGSKILTTSQDNRLRIWD 234 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~-~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 234 (396)
........| +++.|+.|+... +..+|.-+.... ...+..+. ....-..+...|+|++++.+..+ -.|||
T Consensus 119 WYpT~~~L~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d 195 (243)
T PF07250_consen 119 WYPTATTLP-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYD 195 (243)
T ss_pred ccccceECC-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEe
Confidence 344555667 899988888764 344444322111 11111111 11222346677899999888765 45678
Q ss_pred cccccc
Q 016032 235 SIFGNL 240 (396)
Q Consensus 235 ~~~~~~ 240 (396)
..+.+.
T Consensus 196 ~~~n~v 201 (243)
T PF07250_consen 196 YKTNTV 201 (243)
T ss_pred CCCCeE
Confidence 877654
No 464
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.94 E-value=17 Score=32.77 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=79.2
Q ss_pred EEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCC------CcEEEEEeCCCeEEEEECCCCc-ccceeecCC
Q 016032 35 ILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTN------DGTVYAASSDGTVSCTDLETGL-ALSLMNVNP 107 (396)
Q Consensus 35 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~ 107 (396)
++..|..-..++--|++.++.+.... .|.. | -+.|.|.. ...-+.|-.+..|.-.|.+-.. .+.....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~-~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es-- 556 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWD-LKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES-- 556 (776)
T ss_pred EEecCCCcccceeeecccceeeeEee-cCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee--
Confidence 34455555667777777777666663 3433 3 56677652 1223344445555555554322 1111111
Q ss_pred CCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEE
Q 016032 108 NGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFAR 187 (396)
Q Consensus 108 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 187 (396)
....+.. ... ........++++++..|.|++||--.-... . .....+..|..+.... +|.++++.+. ..|.
T Consensus 557 KdY~tKn---~Fs-s~~tTesGyIa~as~kGDirLyDRig~rAK-t--alP~lG~aIk~idvta-~Gk~ilaTCk-~yll 627 (776)
T COG5167 557 KDYKTKN---KFS-SGMTTESGYIAAASRKGDIRLYDRIGKRAK-T--ALPGLGDAIKHIDVTA-NGKHILATCK-NYLL 627 (776)
T ss_pred hhccccc---ccc-ccccccCceEEEecCCCceeeehhhcchhh-h--cCcccccceeeeEeec-CCcEEEEeec-ceEE
Confidence 0000000 011 122335678999999999999995432211 1 2233445788999998 8887777664 5788
Q ss_pred EEecC
Q 016032 188 IWDIR 192 (396)
Q Consensus 188 ~wd~~ 192 (396)
+-|++
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 88875
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.77 E-value=3.1 Score=38.94 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=43.9
Q ss_pred cEEEEEeCCCcEEEeeccc----ceeeeE-ecC--------------------CcccceeEEEEec----CCCcEEEEEe
Q 016032 34 HILLSGDKKGQVGVWDFYK----VSEKIV-YGN--------------------IHSCIVNNIRFNP----TNDGTVYAAS 84 (396)
Q Consensus 34 ~~l~s~~~dg~i~iwd~~~----~~~~~~-~~~--------------------~~~~~v~~~~~~~----~~~~~l~s~~ 84 (396)
..|+.+..||.+....... +..... ... .....+..+++++ + ..++++.+
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~tl~ 237 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEIND-DTFLFTLS 237 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ET-TTEEEEEE
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCC-CCEEEEEe
Confidence 4577778899888887764 111111 000 0123455566655 4 78999999
Q ss_pred CCCeEEEEECCCCcccceeecC
Q 016032 85 SDGTVSCTDLETGLALSLMNVN 106 (396)
Q Consensus 85 ~dg~v~iwd~~~~~~~~~~~~~ 106 (396)
.|+++|+||+.+++++......
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEETT
T ss_pred CCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999997666443
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=18 Score=32.75 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=20.0
Q ss_pred cEEEEEeccCC--CCEEEEeeCCCcEEEEecCC
Q 016032 163 KVVGLHCNPIQ--PELLLSCGNDHFARIWDIRR 193 (396)
Q Consensus 163 ~i~~~~~~~~~--~~~l~~~~~d~~i~~wd~~~ 193 (396)
.+..++|+|.. ...|..-+.|..|++||+..
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 35566777732 35566666777888887754
No 467
>PLN02153 epithiospecifier protein
Probab=87.63 E-value=18 Score=31.42 Aligned_cols=63 Identities=14% Similarity=0.017 Sum_probs=31.6
Q ss_pred cEEEEEeCC-------CcEEEeecccceeeeEecCC--ccc---ceeEEEEecCCCcEEEEEeCC-----CeEEEEECCC
Q 016032 34 HILLSGDKK-------GQVGVWDFYKVSEKIVYGNI--HSC---IVNNIRFNPTNDGTVYAASSD-----GTVSCTDLET 96 (396)
Q Consensus 34 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~ 96 (396)
.+++.|+.+ ..+.+||+.+..-......+ ... ....+.+ + +.+++.|+.+ ..+.+||+.+
T Consensus 34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--G-TKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--C-CEEEEECCCCCCCccCcEEEEECCC
Confidence 677777753 25778887764322111000 000 1112222 2 5666777653 2477888876
Q ss_pred Ccc
Q 016032 97 GLA 99 (396)
Q Consensus 97 ~~~ 99 (396)
.+-
T Consensus 111 ~~W 113 (341)
T PLN02153 111 NEW 113 (341)
T ss_pred CEE
Confidence 544
No 468
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.48 E-value=18 Score=31.28 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=33.6
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccce--eeeEe---cCCcccceeEEEEecC
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVY---GNIHSCIVNNIRFNPT 75 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~---~~~~~~~v~~~~~~~~ 75 (396)
..++|+|.|+| ++|+ +...|.|++++..... ..... ..........++++|+
T Consensus 3 ~P~~~a~~pdG-~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTS-CEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCC-cEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 46789999998 6555 4669999999943332 11111 1234567899999993
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.21 E-value=7.1 Score=29.96 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=24.1
Q ss_pred eeeEEEeCCCC------CEEEEEecCCeEEEEeCCC
Q 016032 118 MLYGMDINPEK------GVVLVADNFGFLYLVDART 147 (396)
Q Consensus 118 ~v~~~~~~~~~------~~l~~~~~~g~i~i~d~~~ 147 (396)
.+.+++|||.| -.|++-+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 38999999953 4677789999999997664
No 470
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.94 E-value=33 Score=33.77 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=55.4
Q ss_pred CCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCC--CCCCcccc-----------CCCCCceeEEEEcCCCCEEEEEeC
Q 016032 160 KGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL--EAGSSLCD-----------LPHKRVVNSAYFSPSGSKILTTSQ 226 (396)
Q Consensus 160 ~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~-----------~~~~~~i~~~~~~~~~~~l~~~~~ 226 (396)
.+.+...++|+|.+...||.....|...||++... .....+.. ......-..+.|.++...|++++.
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 34578899999988889999999999999999211 11111110 011123347889888888888764
Q ss_pred CCcEEEEEcccccc
Q 016032 227 DNRLRIWDSIFGNL 240 (396)
Q Consensus 227 d~~i~iwd~~~~~~ 240 (396)
..+.++|+.+...
T Consensus 224 -~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 224 -SKLMLIDFESNWQ 236 (765)
T ss_pred -CceEEEECCCCCc
Confidence 4788999987765
No 471
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.84 E-value=22 Score=31.63 Aligned_cols=155 Identities=11% Similarity=0.085 Sum_probs=82.9
Q ss_pred EEEecCCCCcEEEEEeCCCcEEEeecccce--eeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccce
Q 016032 25 CLEFHPTNNHILLSGDKKGQVGVWDFYKVS--EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSL 102 (396)
Q Consensus 25 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 102 (396)
.+-|...+ +.|++. ..|.+.=|-+.... .+..+-....++|.++.|++| .+.++.--.+++|.+++....+....
T Consensus 27 gvFfDDaN-kqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD-nkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 27 GVFFDDAN-KQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD-NKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ceeeccCc-ceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC-cceEEEEecCceEEEEecCCCchhhH
Confidence 34444334 433332 33556666655422 222232345679999999999 89999999999999999854443322
Q ss_pred eecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEee-
Q 016032 103 MNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCG- 181 (396)
Q Consensus 103 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~- 181 (396)
..... ......|..+.|+.+ .-++.....| +-+|-.......... ...+...|.-..|.+ +.+.++.++
T Consensus 104 ~~~~c-----k~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRl--Vks~~~nvnWy~yc~-et~v~LL~t~ 173 (657)
T KOG2377|consen 104 YTQEC-----KTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRL--VKSHNLNVNWYMYCP-ETAVILLSTT 173 (657)
T ss_pred HHHHh-----ccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhh--hhhcccCccEEEEcc-ccceEeeecc
Confidence 21110 011123888889876 4455444433 334433332222222 233344678888888 555444333
Q ss_pred -CCCcEEEEecC
Q 016032 182 -NDHFARIWDIR 192 (396)
Q Consensus 182 -~d~~i~~wd~~ 192 (396)
..+++.=+.++
T Consensus 174 ~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 174 VLENVLNPFHFR 185 (657)
T ss_pred ccccccccEEEe
Confidence 23344334443
No 472
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.50 E-value=25 Score=31.85 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=36.6
Q ss_pred ccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCC
Q 016032 64 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEK 128 (396)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 128 (396)
-.....|+|.|+ +.+|++--..|.|++++..++........+... . ......+..|+++|+-
T Consensus 29 L~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~-~-~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIV-N-DAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCcee-c-cCCCCceeeEEECCCc
Confidence 346788999998 776666554699999986654332221111100 0 0012337899999874
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.45 E-value=10 Score=29.10 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=25.4
Q ss_pred CceeEEEEcCCC------CEEEEEeCCCcEEEEEccc
Q 016032 207 RVVNSAYFSPSG------SKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 207 ~~i~~~~~~~~~------~~l~~~~~d~~i~iwd~~~ 237 (396)
..|..++|||.| -+|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999943 4688999999999998653
No 474
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.41 E-value=3.7 Score=22.27 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=22.4
Q ss_pred cCCCcEEEE-EeCCCeEEEEECCCCcccceeecC
Q 016032 74 PTNDGTVYA-ASSDGTVSCTDLETGLALSLMNVN 106 (396)
Q Consensus 74 ~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~ 106 (396)
|+ ++.|++ .-.+++|.++|..+++.+..+...
T Consensus 1 pd-~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PD-GTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CC-CCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 44 444444 456889999999888877776553
No 475
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.39 E-value=17 Score=29.93 Aligned_cols=191 Identities=12% Similarity=0.039 Sum_probs=115.3
Q ss_pred CeEEEEecCCCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccc
Q 016032 22 RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS 101 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 101 (396)
.-..++-.||| .+-+++...|.|--.|..+++....- -+....-..|..-|+ +..-++-+.. -|.-.|-++.+. .
T Consensus 63 ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpd-g~~Witd~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 63 APFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPD-GSAWITDTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred CccccccCCCC-ceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCC-CCeeEecCcc-eeEEecCcccce-E
Confidence 45567778888 56677777777777788777666554 345666677778888 4444432222 344455544433 2
Q ss_pred eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecC---------CeEEEEeCCCCCCCccceeeecCCccEEEEEeccC
Q 016032 102 LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNF---------GFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPI 172 (396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---------g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 172 (396)
.+.++.+ ..........|.+.|++-+++... +.|++|+.. .+.....|+..|
T Consensus 138 ~f~lp~~-----~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-------------qG~gpyGi~atp- 198 (353)
T COG4257 138 RFPLPLE-----HADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-------------QGGGPYGICATP- 198 (353)
T ss_pred Eeecccc-----cCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-------------CCCCCcceEECC-
Confidence 3333221 111237778899999988887531 234444332 223466788899
Q ss_pred CCCEEEEeeCCCcEEEEecCCCCCCCccccC-CCCCceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 173 QPELLLSCGNDHFARIWDIRRLEAGSSLCDL-PHKRVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 173 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
++...++.-.+..|-..|..+.. ...+... .....-..+--+|.|..-++-...+.+..||-.+
T Consensus 199 dGsvwyaslagnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 199 DGSVWYASLAGNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred CCcEEEEeccccceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 88888887777788887776542 2222222 1122334455567787777776777777777654
No 476
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.96 E-value=20 Score=30.26 Aligned_cols=202 Identities=17% Similarity=0.190 Sum_probs=100.8
Q ss_pred CeEEEEecCCCCcEEE-EEeC----------CCcEEEeecccceeeeEecC-----CcccceeEEEEecCCC----cEEE
Q 016032 22 RVTCLEFHPTNNHILL-SGDK----------KGQVGVWDFYKVSEKIVYGN-----IHSCIVNNIRFNPTND----GTVY 81 (396)
Q Consensus 22 ~v~~~~~~~~~~~~l~-s~~~----------dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~----~~l~ 81 (396)
.|..+...+.+.-+++ +|.. .-.|.+||+.+.+.+..+.- .....+..+.+....+ .+++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 3666777776632233 2321 12688999999886665531 1345678888876422 3433
Q ss_pred EE-eCCCeEEEEECCCCcccceeecCCCCCCCC----------CcceeeeEEEeCC---CCCEEEEEecCC-eEEEEeC-
Q 016032 82 AA-SSDGTVSCTDLETGLALSLMNVNPNGWHGP----------RTWRMLYGMDINP---EKGVVLVADNFG-FLYLVDA- 145 (396)
Q Consensus 82 s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~---~~~~l~~~~~~g-~i~i~d~- 145 (396)
.+ +..+-|.++|+.+++.-+............ .....+..++.+| +++.|....-.+ .++-...
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 33 334689999999987654433211111000 0001145556554 555666554433 2332221
Q ss_pred --CCCCCCcc------ceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC---CC-CCceeEEE
Q 016032 146 --RTNSRSGE------AILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PH-KRVVNSAY 213 (396)
Q Consensus 146 --~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~-~~~i~~~~ 213 (396)
+....... .......+.....++..+ ++.++++--..+.|..|+....-....+..+ .. -..+..+.
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence 11111111 111112223566788888 8999999999999999998752211122111 12 34667788
Q ss_pred EcC--CCCEEEEE
Q 016032 214 FSP--SGSKILTT 224 (396)
Q Consensus 214 ~~~--~~~~l~~~ 224 (396)
+.+ +|.+.+.+
T Consensus 241 i~~~~~g~L~v~s 253 (287)
T PF03022_consen 241 IDPEGDGYLWVLS 253 (287)
T ss_dssp E-T--TS-EEEEE
T ss_pred eccccCceEEEEE
Confidence 877 55544444
No 477
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=85.90 E-value=15 Score=35.66 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=47.1
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEeCCCCCC---------------------CccceeeecCCccEEEEEeccCCCCEE
Q 016032 119 LYGMDINPEKGVVLVADNFGFLYLVDARTNSR---------------------SGEAILIHRKGSKVVGLHCNPIQPELL 177 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~~~~~~l 177 (396)
|.|+.-+.+|+.+++|..| +.+|.+..... +........++..|..++... ...+|
T Consensus 184 V~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDq-sRg~l 260 (1263)
T COG5308 184 VRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQ-SRGLL 260 (1263)
T ss_pred eEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecc-cccce
Confidence 7888888889988888777 56665532100 000111223445788888887 66778
Q ss_pred EEeeCCCcEEEEecCCC
Q 016032 178 LSCGNDHFARIWDIRRL 194 (396)
Q Consensus 178 ~~~~~d~~i~~wd~~~~ 194 (396)
.+-+....|+-|.+...
T Consensus 261 y~Lr~kS~Vray~itkn 277 (1263)
T COG5308 261 YVLRKKSAVRAYSITKN 277 (1263)
T ss_pred eeecccceeeeEeeecc
Confidence 88888888888887543
No 478
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.81 E-value=22 Score=30.60 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=33.3
Q ss_pred CcEEEEEeC-----CCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCC----eEEEEeCCC
Q 016032 77 DGTVYAASS-----DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFG----FLYLVDART 147 (396)
Q Consensus 77 ~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g----~i~i~d~~~ 147 (396)
+.+.+.|+. ...+..||+.+.+-...-..+... . ....+...++...+.|+.++ .+..||+.+
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~----r----~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP----R----VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC----C----CcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 556666664 235778888766543221111110 0 11122223566777776553 356888877
Q ss_pred CC
Q 016032 148 NS 149 (396)
Q Consensus 148 ~~ 149 (396)
..
T Consensus 196 ~~ 197 (323)
T TIGR03548 196 NQ 197 (323)
T ss_pred Ce
Confidence 54
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.07 E-value=22 Score=35.90 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=25.3
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEeCCC
Q 016032 119 LYGMDINPEKGVVLVADNFGFLYLVDART 147 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~~~g~i~i~d~~~ 147 (396)
...++|+|...+++.++..|.|+++-...
T Consensus 38 ~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 38 PSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CcceeeccccceEEEEEecccEEEecccc
Confidence 56788999999999999999999986554
No 480
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.92 E-value=28 Score=31.01 Aligned_cols=109 Identities=14% Similarity=0.044 Sum_probs=59.0
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCC----ccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCC
Q 016032 119 LYGMDINPEKGVVLVADNFGFLYLVDARTNSRS----GEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRL 194 (396)
Q Consensus 119 v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~ 194 (396)
+.++.+.+++..++++ ..|.+..- ...+..- ............+..+.+.+ ++..+++| ..|.+.... ..+
T Consensus 283 l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~-D~G 357 (398)
T PLN00033 283 IQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRST-DGG 357 (398)
T ss_pred eeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-CCC
Confidence 7889999998877766 44554432 2222110 01111111223588898887 66655555 567766653 222
Q ss_pred CCCCcccc-CCCCCceeEEEEcCCCCEEEEEeCCCcEEEE
Q 016032 195 EAGSSLCD-LPHKRVVNSAYFSPSGSKILTTSQDNRLRIW 233 (396)
Q Consensus 195 ~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 233 (396)
+.-..... -........+.|.++++.+++| .+|.|.-|
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred cceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 22111111 1224567899998777666655 57776544
No 481
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.72 E-value=25 Score=30.27 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=32.8
Q ss_pred CCCEEEEEec-----CCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCC----cEEEEecCCC
Q 016032 127 EKGVVLVADN-----FGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDH----FARIWDIRRL 194 (396)
Q Consensus 127 ~~~~l~~~~~-----~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~ 194 (396)
++...+.|+. ...+..||+.+.+-.... ..... ......+..- ++.+.+.|+.++ .+..||..+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP-DFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-CCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCC
Confidence 4555666653 246888898875432111 11110 0111122222 567777777654 3567887654
No 482
>PRK13684 Ycf48-like protein; Provisional
Probab=84.31 E-value=27 Score=30.31 Aligned_cols=155 Identities=17% Similarity=0.120 Sum_probs=79.7
Q ss_pred ccceeEEEEecCCCcEEEEEeCCCeEEEEECCCC-cccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEE
Q 016032 64 SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETG-LALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYL 142 (396)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i 142 (396)
...+..+.+.|+ +.+++++ ..|.+..- .+.+ +.-........ ..++++.+.+++..++++. .|.+.+
T Consensus 172 ~g~~~~i~~~~~-g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~--------~~l~~i~~~~~g~~~~vg~-~G~~~~ 239 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSS--------RRLQSMGFQPDGNLWMLAR-GGQIRF 239 (334)
T ss_pred cceEEEEEECCC-CeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCc--------ccceeeeEcCCCCEEEEec-CCEEEE
Confidence 456888999987 6555554 45654431 1122 21111111111 2388899999988777654 566654
Q ss_pred EeCCCCCCCccceee-ecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCcccc-CCCCCceeEEEEcCCCCE
Q 016032 143 VDARTNSRSGEAILI-HRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCD-LPHKRVVNSAYFSPSGSK 220 (396)
Q Consensus 143 ~d~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 220 (396)
-....+..-...... ......+..+.+.| ++..++++ .+|.|.. ....++.-..+.. ..-......+.|..+++.
T Consensus 240 ~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~ 316 (334)
T PRK13684 240 NDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG 316 (334)
T ss_pred ccCCCCCccccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCce
Confidence 223332221111111 01122477888988 66655554 5676553 3332222222211 112235777887766666
Q ss_pred EEEEeCCCcEEEEE
Q 016032 221 ILTTSQDNRLRIWD 234 (396)
Q Consensus 221 l~~~~~d~~i~iwd 234 (396)
+++| ..|.|-.|+
T Consensus 317 ~~~G-~~G~il~~~ 329 (334)
T PRK13684 317 FVLG-QRGVLLRYV 329 (334)
T ss_pred EEEC-CCceEEEec
Confidence 6654 577777665
No 483
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.02 E-value=58 Score=32.55 Aligned_cols=135 Identities=14% Similarity=0.047 Sum_probs=72.0
Q ss_pred CCcEEEeecccceeeeEec--CCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceee
Q 016032 42 KGQVGVWDFYKVSEKIVYG--NIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRML 119 (396)
Q Consensus 42 dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (396)
+|.++.|++........+. ..-.++|.+ ..|. ..++++| ....+++|++-..+.++..+... ....|
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~A--i~~f-~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~-------~p~~I 979 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGA--ICPF-QGRVLAG-VGRFLRLYDLGKKKLLRKCELKF-------IPNRI 979 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceE--Eecc-CCEEEEe-cccEEEEeeCChHHHHhhhhhcc-------CceEE
Confidence 3457777765433333332 112334444 4465 4455544 46789999998877766554332 11236
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEec
Q 016032 120 YGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDI 191 (396)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~ 191 (396)
..+.+ .+..+++|...-.+.++--+........+......-.++++.+. +...++.+..-|.+.+-.+
T Consensus 980 s~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 980 SSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe--cCCceeeccccCcEEEEEC
Confidence 66555 45668888766655554443322222122222222246666665 4566777777777776655
No 484
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.84 E-value=48 Score=31.50 Aligned_cols=170 Identities=12% Similarity=0.140 Sum_probs=81.5
Q ss_pred cccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccc--eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec-C--
Q 016032 63 HSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALS--LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN-F-- 137 (396)
Q Consensus 63 ~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~-- 137 (396)
-...|..+.|.++ +..+++....|.|.+||...+.... ......... ......|..........++++.+. .
T Consensus 128 l~~kvv~Ik~~~~-~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~--v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 128 LDDKVVGIKFSSD-GKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSIN--VSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred cccceEEEEEecC-CCEEEEEEcCCcEEEEeccccccccccccccccccc--eehhhhhcccccccCCceEEEEEEcCCC
Confidence 4678999999988 8899999999999999993332221 111111100 000011222221122344444443 2
Q ss_pred -CeEEEEeCCCC-CCCccce--eeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccC---CCC-Cce
Q 016032 138 -GFLYLVDARTN-SRSGEAI--LIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDL---PHK-RVV 209 (396)
Q Consensus 138 -g~i~i~d~~~~-~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~-~~i 209 (396)
-..+++.+... ....+.. ........-..+++. .|.+.-- .++.|.+|++...+....+... ... ..+
T Consensus 205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~--~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~ 280 (670)
T PF10395_consen 205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ--FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDL 280 (670)
T ss_pred cEEEEEEEeccCCcceEEeehheeccCCcccceEEEe--CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccc
Confidence 25677777211 1111111 111111111223333 3443333 5678999998765544433322 111 223
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEEccccccc
Q 016032 210 NSAYFSPSGSKILTTSQDNRLRIWDSIFGNLD 241 (396)
Q Consensus 210 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 241 (396)
.++.- |..+.++.+. ++.|.+.|+.-..++
T Consensus 281 vSl~~-~s~nRvLLs~-~nkIyLld~~~~siL 310 (670)
T PF10395_consen 281 VSLKP-PSPNRVLLSV-NNKIYLLDLKFESIL 310 (670)
T ss_pred eEeec-CCCCeEEEEc-CCEEEEEeehhhhhh
Confidence 33322 2333444333 568999999755443
No 485
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=80.08 E-value=38 Score=29.22 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=83.0
Q ss_pred ccceeEEEEecCCCcEEEEEeCCCe------EEEEECCCC-cccc------eeecCCC-CCCCCCcceeeeEEEeCCCCC
Q 016032 64 SCIVNNIRFNPTNDGTVYAASSDGT------VSCTDLETG-LALS------LMNVNPN-GWHGPRTWRMLYGMDINPEKG 129 (396)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~dg~------v~iwd~~~~-~~~~------~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 129 (396)
-+.+..|.+.|+ +..+++.+.+|. +..+++... .... ...+... +..-.......-++++.+++.
T Consensus 19 ~GGlSgl~~~~~-~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPD-DGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCC-CCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788888876 566777777777 555555431 0111 1111100 000000001255778877788
Q ss_pred EEEEEecC------CeEEEEeCCCCCCCccce------------eeecCCccEEEEEeccCCCCEEEEeeC-----CC--
Q 016032 130 VVLVADNF------GFLYLVDARTNSRSGEAI------------LIHRKGSKVVGLHCNPIQPELLLSCGN-----DH-- 184 (396)
Q Consensus 130 ~l~~~~~~------g~i~i~d~~~~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~l~~~~~-----d~-- 184 (396)
++++.-.+ ..|+.++.. +....... .........-+|+++| ++..|+++.+ |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccCCCcc
Confidence 77776666 688888866 33322210 1112334688999999 8886666543 22
Q ss_pred c-------EEEEecCCCCCC----CccccCC------CCCceeEEEEcCCCCEEEE
Q 016032 185 F-------ARIWDIRRLEAG----SSLCDLP------HKRVVNSAYFSPSGSKILT 223 (396)
Q Consensus 185 ~-------i~~wd~~~~~~~----~~~~~~~------~~~~i~~~~~~~~~~~l~~ 223 (396)
. ++++........ .....+. ....|..+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 455444322111 1111111 3466788888888886654
No 486
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.77 E-value=4.2 Score=20.63 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=18.7
Q ss_pred EEEeec-CCcEEEEcCCCcceeeec
Q 016032 326 VLASGS-SRSIFIWRPKEKSELVEQ 349 (396)
Q Consensus 326 ~l~sg~-d~~i~iw~~~~~~~~~~~ 349 (396)
.++.++ +|.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 455556 999999999999877653
No 487
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.75 E-value=34 Score=28.36 Aligned_cols=153 Identities=10% Similarity=0.021 Sum_probs=87.4
Q ss_pred ccceeEEEEecCCCcEEEEEeC---------CCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEE
Q 016032 64 SCIVNNIRFNPTNDGTVYAASS---------DGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVA 134 (396)
Q Consensus 64 ~~~v~~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 134 (396)
........|.+. +.+-+++.. .+.|++|+...|. ..+.++..|+|...++.
T Consensus 147 ~~nlet~vfD~~-G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------------------gpyGi~atpdGsvwyas 206 (353)
T COG4257 147 DANLETAVFDPW-GNLWFTGQIGAYGRLDPARNVISVFPAPQGG-------------------GPYGICATPDGSVWYAS 206 (353)
T ss_pred CCcccceeeCCC-ccEEEeeccccceecCcccCceeeeccCCCC-------------------CCcceEECCCCcEEEEe
Confidence 345677788888 777777652 1234444433221 16678899999998888
Q ss_pred ecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEEEeeCCCcEEEEecCCCCCCCccccCCCCCceeEEEE
Q 016032 135 DNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLLSCGNDHFARIWDIRRLEAGSSLCDLPHKRVVNSAYF 214 (396)
Q Consensus 135 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~ 214 (396)
-.+..|-..|...+... .+............+-.+| .+..-++-...+.+.-+|..... -......+.+....++..
T Consensus 207 lagnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rV 283 (353)
T COG4257 207 LAGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRV 283 (353)
T ss_pred ccccceEEcccccCCcc-eecCCCcccccccccccCc-cCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeee
Confidence 88888888888776321 1111111112344455566 67777777777778877765422 112222234444556666
Q ss_pred cCCCCEEEEEeCCCcEEEEEccccc
Q 016032 215 SPSGSKILTTSQDNRLRIWDSIFGN 239 (396)
Q Consensus 215 ~~~~~~l~~~~~d~~i~iwd~~~~~ 239 (396)
...++.-.+--..|.|.-+|-++.+
T Consensus 284 D~~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 284 DRHGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred ccCCcEEeeccccCceeecCcccce
Confidence 6555544443344566666655443
No 488
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.60 E-value=47 Score=29.94 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.3
Q ss_pred CceeEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 016032 207 RVVNSAYFSPSGSKILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 207 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 237 (396)
..|..++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3489999999889999999999999999974
No 489
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=79.57 E-value=5.8 Score=19.43 Aligned_cols=25 Identities=8% Similarity=0.262 Sum_probs=20.2
Q ss_pred cEEEEEeccCCCCEEEEeeCCCcEEEEe
Q 016032 163 KVVGLHCNPIQPELLLSCGNDHFARIWD 190 (396)
Q Consensus 163 ~i~~~~~~~~~~~~l~~~~~d~~i~~wd 190 (396)
.|.+++..+ .+++++...+.+|+|.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 577888865 7888888889999873
No 490
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=79.27 E-value=69 Score=31.66 Aligned_cols=166 Identities=12% Similarity=0.049 Sum_probs=95.1
Q ss_pred CcccceeEEEEe---cC---CCcEEEEEeCCCeEEEEECCCCcc---------------cceeecCCCCCCCCCcceeee
Q 016032 62 IHSCIVNNIRFN---PT---NDGTVYAASSDGTVSCTDLETGLA---------------LSLMNVNPNGWHGPRTWRMLY 120 (396)
Q Consensus 62 ~~~~~v~~~~~~---~~---~~~~l~s~~~dg~v~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~v~ 120 (396)
.-..+|..|+|. .. ...+|++ -....+.|+...-.+. +..+..... ......
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t------gg~~~a 149 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT------GGFPHA 149 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhc------CCCccc
Confidence 367889999998 21 1234444 4456677777322211 111111111 112366
Q ss_pred EEEeCCC-CCEEEEEecCCeEEEEeCCCCCCCc--cceee----------ecCCccEEEEEeccCCCCEEEEeeCCCcEE
Q 016032 121 GMDINPE-KGVVLVADNFGFLYLVDARTNSRSG--EAILI----------HRKGSKVVGLHCNPIQPELLLSCGNDHFAR 187 (396)
Q Consensus 121 ~~~~~~~-~~~l~~~~~~g~i~i~d~~~~~~~~--~~~~~----------~~~~~~i~~~~~~~~~~~~l~~~~~d~~i~ 187 (396)
.++|+|. ...||+.+..|...+|++....... ..... .........+.|.+ +.+.|+.++. ..+.
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~l~ 227 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SKLM 227 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-CceE
Confidence 7899985 5689999999999999992211110 00000 00112345788887 6677777654 6789
Q ss_pred EEecCCCCCCCccccCCCCCceeEEEEcCC--CCEEEEEeCCCcEEEEEcccc
Q 016032 188 IWDIRRLEAGSSLCDLPHKRVVNSAYFSPS--GSKILTTSQDNRLRIWDSIFG 238 (396)
Q Consensus 188 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~ 238 (396)
++|+.+......+........|..+.-+|. +..++.. ...|...++...
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred EEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 999987554332333345567888888885 3333332 246777787653
No 491
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.77 E-value=72 Score=31.64 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCCCcEEEEEeCCCcEEEeecccceeeeEe----------cCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcc
Q 016032 30 PTNNHILLSGDKKGQVGVWDFYKVSEKIVY----------GNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLA 99 (396)
Q Consensus 30 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 99 (396)
.-| ..|..|+.+|.+.+|.+......... ..-+..+|..+...+. -..+++-+ |+.|.++++..-+.
T Consensus 24 ~~~-~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~-~~~ll~l~-dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 24 AYG-NHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCAS-LELLLILS-DSQIAVHKLPELEP 100 (877)
T ss_pred HhC-CEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcch-hcchheec-CCcceeeecCcccc
Confidence 335 47999999999999998764211110 0123567777777775 44444444 77788888776555
No 492
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.67 E-value=46 Score=29.32 Aligned_cols=68 Identities=28% Similarity=0.315 Sum_probs=42.1
Q ss_pred CcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCc
Q 016032 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSG 152 (396)
Q Consensus 77 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~ 152 (396)
+..++.+..+|.|.-.|..++..+........ ...+..-.+..+|+ +++++.++.++.+|.+++....
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~-------~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W 135 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGA-------VAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVW 135 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCc-------ceeccCceEEeCCe-EEEecccceEEEEECCCCcEEE
Confidence 45666667889898899888886643332210 00011111222454 8888888999999998766544
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.47 E-value=47 Score=29.26 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred CcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEe-cC---CeEEEEeCCCCCCCc
Q 016032 77 DGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVAD-NF---GFLYLVDARTNSRSG 152 (396)
Q Consensus 77 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~---g~i~i~d~~~~~~~~ 152 (396)
..+++....++-+.+||+.. +.+..+... . ...-.....+.+.-...-|++++ ++ ..|++|.+.......
T Consensus 68 kSlIigTdK~~GL~VYdL~G-k~lq~~~~G--r---~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDG-KELQSLPVG--R---PNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS--EEEEE-SS------EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cceEEEEeCCCCEEEEcCCC-cEEEeecCC--C---cceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 45777778888999999985 444444211 0 01111122333322111244443 32 468888775321111
Q ss_pred ccee-----eecCCccEEEEEe--ccCCCC-EEEEeeCCCcEEEEecCCCCCC----CccccCCCCCceeEEEEcCCCCE
Q 016032 153 EAIL-----IHRKGSKVVGLHC--NPIQPE-LLLSCGNDHFARIWDIRRLEAG----SSLCDLPHKRVVNSAYFSPSGSK 220 (396)
Q Consensus 153 ~~~~-----~~~~~~~i~~~~~--~~~~~~-~l~~~~~d~~i~~wd~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~ 220 (396)
..+. ....-..+..+++ +|.++. +++....+|.+.-|.+...... ..++.+.-...+..|........
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 1100 0111123566666 343444 5666778898888887533222 23455555668999999998889
Q ss_pred EEEEeCCCcEEEEEccc
Q 016032 221 ILTTSQDNRLRIWDSIF 237 (396)
Q Consensus 221 l~~~~~d~~i~iwd~~~ 237 (396)
|+.+-++.-|.-|+.+.
T Consensus 222 LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp EEEEETTTEEEEEESSC
T ss_pred EEEecCccEEEEEecCC
Confidence 99999988787777763
No 494
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=77.59 E-value=93 Score=32.24 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=40.2
Q ss_pred eccccCCeEEEEecC--CCCcEE----EEEeCCCcEEEeecccceeeeEecCCcccceeEEEE-ecCCCcEEEEEeCCCe
Q 016032 16 IRYHSRRVTCLEFHP--TNNHIL----LSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIRF-NPTNDGTVYAASSDGT 88 (396)
Q Consensus 16 ~~~h~~~v~~~~~~~--~~~~~l----~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~ 88 (396)
..||...|.|....- ++.++| +..+.||.+.|=|.+--.. .+..+.-..|..+.. .|...-+++..--||+
T Consensus 343 gdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNyIRR--I~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgt 420 (1899)
T KOG4659|consen 343 GDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNYIRR--ISQDGQVSTILTLGLTDTSHSYYIAVSPVDGT 420 (1899)
T ss_pred cCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchheee--ecCCCceEEEEEecCCCccceeEEEecCcCce
Confidence 467888888876632 122332 2345688888877643211 111122222222221 1221223444445677
Q ss_pred EEEEECCCCcccc
Q 016032 89 VSCTDLETGLALS 101 (396)
Q Consensus 89 v~iwd~~~~~~~~ 101 (396)
+.+=|..+.+...
T Consensus 421 lyvSdp~s~qv~r 433 (1899)
T KOG4659|consen 421 LYVSDPLSKQVWR 433 (1899)
T ss_pred EEecCCCcceEEE
Confidence 7666665554433
No 495
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.30 E-value=2.2 Score=40.79 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=50.4
Q ss_pred eeeccccCCeEEEEecC---CCCcEEEEEeCCCcEEEeecccceeeeEecCCcccceeEEE-----------EecCCCcE
Q 016032 14 AVIRYHSRRVTCLEFHP---TNNHILLSGDKKGQVGVWDFYKVSEKIVYGNIHSCIVNNIR-----------FNPTNDGT 79 (396)
Q Consensus 14 ~~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~~ 79 (396)
+....-...+.-+.|.| .. -++..+..++.|++..+..... .+..+|...+..++ .+|| |..
T Consensus 174 ~~~~p~gs~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpD-Gtv 249 (1283)
T KOG1916|consen 174 TPITPYGSDPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPD-GTV 249 (1283)
T ss_pred eecCcCCCCcceeeeccccccc-ceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCC-CcE
Confidence 33333334445556655 33 4566777789999887766443 22244776666654 4788 888
Q ss_pred EEEEeCCCeEEEEECC
Q 016032 80 VYAASSDGTVSCTDLE 95 (396)
Q Consensus 80 l~s~~~dg~v~iwd~~ 95 (396)
|+.++.||.+++|.+.
T Consensus 250 ~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 250 FAWAISDGSVGFYQIY 265 (1283)
T ss_pred EEEeecCCccceeeee
Confidence 8888889888888763
No 496
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.26 E-value=53 Score=29.29 Aligned_cols=152 Identities=9% Similarity=0.061 Sum_probs=75.9
Q ss_pred eEEEEecCCCCcEEEEEeCCCcEE-Eeecccce-eeeEecCCcccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCccc
Q 016032 23 VTCLEFHPTNNHILLSGDKKGQVG-VWDFYKVS-EKIVYGNIHSCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLAL 100 (396)
Q Consensus 23 v~~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 100 (396)
...+..++++ .+++.|. .|.+. -||--... .... ......+..+.|.++ +..++++ ..|.+ ++....++.-
T Consensus 241 f~~v~~~~dG-~~~~vg~-~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~d-g~l~l~g-~~G~l-~~S~d~G~~~ 313 (398)
T PLN00033 241 FSTVNRSPDG-DYVAVSS-RGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRAD-GGLWLLT-RGGGL-YVSKGTGLTE 313 (398)
T ss_pred eeeEEEcCCC-CEEEEEC-CccEEEecCCCCcceEEec--CCCccceeeeeEcCC-CCEEEEe-CCceE-EEecCCCCcc
Confidence 4455667777 5566554 34433 34432211 1122 234567899999987 6666655 45654 3444444321
Q ss_pred c--eeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCCccceeeecCCccEEEEEeccCCCCEEE
Q 016032 101 S--LMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRSGEAILIHRKGSKVVGLHCNPIQPELLL 178 (396)
Q Consensus 101 ~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 178 (396)
. .+..... ......+.++.+.+++..+++| ..|.+.... ..++.-........-......+.|.+ ++..++
T Consensus 314 ~~~~f~~~~~----~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~~ 386 (398)
T PLN00033 314 EDFDFEEADI----KSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKKGFV 386 (398)
T ss_pred cccceeeccc----CCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCceEE
Confidence 1 1111100 0011237888898877765555 556655543 22221111100112223577888876 555555
Q ss_pred EeeCCCcEEEE
Q 016032 179 SCGNDHFARIW 189 (396)
Q Consensus 179 ~~~~d~~i~~w 189 (396)
+| .+|.|.-|
T Consensus 387 ~G-~~G~il~~ 396 (398)
T PLN00033 387 LG-NDGVLLRY 396 (398)
T ss_pred Ee-CCcEEEEe
Confidence 55 56777654
No 497
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.06 E-value=8.7 Score=20.48 Aligned_cols=29 Identities=31% Similarity=0.492 Sum_probs=23.8
Q ss_pred EEEEEeCCCeEEEEECCCCcccceeecCC
Q 016032 79 TVYAASSDGTVSCTDLETGLALSLMNVNP 107 (396)
Q Consensus 79 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 107 (396)
.++.++.+|.|.-.|.++|+.+..+....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45667899999999999999988876543
No 498
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=76.22 E-value=54 Score=28.87 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=60.5
Q ss_pred EEEEeCCCcEEEeecccceeeeEecCCc-ccceeEEEEecCCCcEEEEEeCCCeEEEEECCCCcccceeecCCCCCCCCC
Q 016032 36 LLSGDKKGQVGVWDFYKVSEKIVYGNIH-SCIVNNIRFNPTNDGTVYAASSDGTVSCTDLETGLALSLMNVNPNGWHGPR 114 (396)
Q Consensus 36 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 114 (396)
++.+..+|.|.-.|..++..+....... ...+..-.+..+ + .++.++.++.+..+|..+|+......... .
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~-G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~----- 142 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD-G-KIYVGSWDGKLYALDASTGTLVWSRNVGG-S----- 142 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC-C-eEEEecccceEEEEECCCCcEEEEEecCC-C-----
Confidence 5566778888888888877654332111 122333333334 4 47888889999999998898887776544 0
Q ss_pred cceeeeEEEeCCCCCEEEEEecCCeEEEEeCCCCCCC
Q 016032 115 TWRMLYGMDINPEKGVVLVADNFGFLYLVDARTNSRS 151 (396)
Q Consensus 115 ~~~~v~~~~~~~~~~~l~~~~~~g~i~i~d~~~~~~~ 151 (396)
..+..-....++ .+..++.++.+.-.+..++...
T Consensus 143 --~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~ 176 (370)
T COG1520 143 --PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLK 176 (370)
T ss_pred --eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEE
Confidence 001111122222 2333336677777777766553
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.20 E-value=46 Score=27.98 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=38.5
Q ss_pred CcEEEeecccceeeeEecCCcccceeEEEEecCCCcEEEEEe------CCCeEEEEECCCCcc
Q 016032 43 GQVGVWDFYKVSEKIVYGNIHSCIVNNIRFNPTNDGTVYAAS------SDGTVSCTDLETGLA 99 (396)
Q Consensus 43 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~dg~v~iwd~~~~~~ 99 (396)
..|++||..+.+-...- .+-.+.|+.|.|..+ .++++.|. ....+..||+.+...
T Consensus 16 ~~lC~yd~~~~qW~~~g-~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPG-NGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeecCC-CCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 35999998875543333 446788999999865 66666664 355688898887644
No 500
>PRK13613 lipoprotein LpqB; Provisional
Probab=75.99 E-value=73 Score=30.26 Aligned_cols=203 Identities=7% Similarity=-0.029 Sum_probs=0.0
Q ss_pred cccC-CeEEEEecCCCCcEEEEEeCCCcEEEeeccccee----eeEecCCcccceeEEEEecCCCcEEEEEeC----CCe
Q 016032 18 YHSR-RVTCLEFHPTNNHILLSGDKKGQVGVWDFYKVSE----KIVYGNIHSCIVNNIRFNPTNDGTVYAASS----DGT 88 (396)
Q Consensus 18 ~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~----dg~ 88 (396)
++.. .+.+.+.++++....+.......+++..+..+.. ..... ....++.-.|.++ + .+-+... ...
T Consensus 359 g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~--~~~~Lt~PS~d~~-g-~vWtvd~~~~~~~v 434 (599)
T PRK13613 359 GSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT--ADGRLTSPSWDGR-G-DLWVVDRDPADPRL 434 (599)
T ss_pred CCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee--ccCcccCCcCcCC-C-CEEEecCCCCCceE
Q ss_pred EEEEECCCCcccceeecCCCCCCCCCcceeeeEEEeCCCCCEEEEEec---CCeEEEEeCCCC----CCCccceeeecCC
Q 016032 89 VSCTDLETGLALSLMNVNPNGWHGPRTWRMLYGMDINPEKGVVLVADN---FGFLYLVDARTN----SRSGEAILIHRKG 161 (396)
Q Consensus 89 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~g~i~i~d~~~~----~~~~~~~~~~~~~ 161 (396)
+++..- +++....-...... ..|..+..+++|..++.-.. .+.|++--+... ..+..........
T Consensus 435 l~v~~~-~G~~~~V~~~~l~g-------~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l 506 (599)
T PRK13613 435 LWLLQG-DGEPVEVRTPELDG-------HRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL 506 (599)
T ss_pred EEEEcC-CCcEEEeeccccCC-------CEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC
Q ss_pred ccEEEEEeccCCCCEEEEeeCCC-cEEEEecCCCCCCCccccCCCCCceeEEEEcCCCCEEEEE-eCCCcEEEE
Q 016032 162 SKVVGLHCNPIQPELLLSCGNDH-FARIWDIRRLEAGSSLCDLPHKRVVNSAYFSPSGSKILTT-SQDNRLRIW 233 (396)
Q Consensus 162 ~~i~~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iw 233 (396)
..+.+++|.. +..+++.+...+ ...+|-+.-............-..+..++-..+...++.+ ..++.|...
T Consensus 507 ~~v~~~~W~~-~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v~~~ 579 (599)
T PRK13613 507 EDVTDMSWAG-DSQLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGIVRL 579 (599)
T ss_pred CccceeEEcC-CCEEEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCeEEe
Done!