Query 016036
Match_columns 396
No_of_seqs 292 out of 1245
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 6E-109 1E-113 827.0 34.0 396 1-396 1-408 (408)
2 KOG2288 Galactosyltransferases 100.0 3.5E-72 7.6E-77 526.4 16.8 265 124-396 8-273 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 4.1E-54 9E-59 453.4 22.7 235 124-395 382-624 (636)
4 KOG2287 Galactosyltransferases 100.0 2.3E-52 5E-57 418.9 22.2 239 126-394 94-336 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 1.7E-48 3.7E-53 359.9 17.1 191 141-339 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 1.5E-32 3.3E-37 272.7 18.1 193 121-332 74-307 (382)
7 PF13334 DUF4094: Domain of un 99.9 7E-27 1.5E-31 193.0 6.9 85 17-101 1-94 (95)
8 PF02434 Fringe: Fringe-like; 99.8 9.3E-19 2E-23 168.8 11.8 191 128-346 7-210 (252)
9 KOG2246 Galactosyltransferases 99.7 5.5E-16 1.2E-20 156.5 13.1 169 124-339 88-269 (364)
10 PLN03153 hypothetical protein; 99.1 7.1E-10 1.5E-14 115.2 14.2 179 127-344 122-318 (537)
11 KOG3708 Uncharacterized conser 97.8 0.00015 3.3E-09 75.4 10.1 195 128-392 27-240 (681)
12 PF01755 Glyco_transf_25: Glyc 95.3 0.32 6.9E-06 44.5 12.4 93 131-240 4-101 (200)
13 PF13641 Glyco_tranf_2_3: Glyc 94.9 0.86 1.9E-05 41.7 14.0 184 129-334 3-198 (228)
14 TIGR03472 HpnI hopanoid biosyn 94.7 1.1 2.3E-05 45.5 15.2 159 165-333 70-240 (373)
15 cd04192 GT_2_like_e Subfamily 94.4 1.2 2.7E-05 40.3 13.5 167 166-339 29-204 (229)
16 cd02525 Succinoglycan_BP_ExoA 93.5 4.6 9.9E-05 37.0 15.7 160 164-335 30-197 (249)
17 TIGR03469 HonB hopene-associat 93.3 5 0.00011 40.9 17.0 166 165-338 70-256 (384)
18 cd02510 pp-GalNAc-T pp-GalNAc- 93.1 5.1 0.00011 38.9 16.1 126 216-341 75-222 (299)
19 cd02520 Glucosylceramide_synth 92.5 7.7 0.00017 34.9 16.2 133 166-334 31-165 (196)
20 PF00535 Glycos_transf_2: Glyc 91.8 3.8 8.2E-05 34.4 11.9 158 130-307 3-168 (169)
21 PF13506 Glyco_transf_21: Glyc 91.4 0.36 7.7E-06 44.1 5.3 124 210-339 17-147 (175)
22 cd06421 CESA_CelA_like CESA_Ce 90.9 8.2 0.00018 35.1 13.9 120 216-341 76-208 (234)
23 PRK11204 N-glycosyltransferase 90.4 17 0.00038 37.0 17.2 160 166-339 84-255 (420)
24 cd04186 GT_2_like_c Subfamily 90.4 10 0.00022 32.1 14.0 79 223-333 73-152 (166)
25 cd06439 CESA_like_1 CESA_like_ 89.1 15 0.00034 33.9 14.4 191 127-341 29-226 (251)
26 cd06423 CESA_like CESA_like is 88.5 10 0.00022 31.6 11.7 94 215-308 69-170 (180)
27 cd04196 GT_2_like_d Subfamily 87.8 19 0.00042 32.0 14.8 162 165-339 27-198 (214)
28 cd04187 DPM1_like_bac Bacteria 87.4 6.7 0.00014 34.5 10.3 135 164-309 28-164 (181)
29 cd04185 GT_2_like_b Subfamily 87.2 21 0.00046 31.8 13.9 102 213-343 69-172 (202)
30 cd06532 Glyco_transf_25 Glycos 86.4 6.4 0.00014 33.8 9.3 116 132-313 3-119 (128)
31 cd06435 CESA_NdvC_like NdvC_li 82.5 32 0.00069 31.5 12.8 118 215-338 73-203 (236)
32 cd06434 GT2_HAS Hyaluronan syn 82.4 9 0.0002 35.0 9.0 151 166-333 29-200 (235)
33 PF13632 Glyco_trans_2_3: Glyc 82.0 4.2 9E-05 36.4 6.5 117 227-347 1-127 (193)
34 cd06433 GT_2_WfgS_like WfgS an 81.2 12 0.00025 32.8 8.9 113 215-334 66-182 (202)
35 cd04179 DPM_DPG-synthase_like 79.7 16 0.00036 31.7 9.4 132 165-308 28-167 (185)
36 cd02526 GT2_RfbF_like RfbF is 79.2 47 0.001 30.2 12.7 146 193-341 46-201 (237)
37 cd06420 GT2_Chondriotin_Pol_N 77.3 14 0.00031 32.1 8.2 96 216-332 71-166 (182)
38 PF04646 DUF604: Protein of un 77.1 3.5 7.5E-05 40.2 4.4 51 293-343 12-66 (255)
39 cd04184 GT2_RfbC_Mx_like Myxoc 75.2 58 0.0013 28.7 16.8 110 216-334 75-189 (202)
40 COG1215 Glycosyltransferases, 73.8 77 0.0017 32.1 13.6 194 127-339 54-260 (439)
41 PRK10714 undecaprenyl phosphat 72.6 87 0.0019 31.2 13.4 135 164-309 37-174 (325)
42 cd06442 DPM1_like DPM1_like re 72.4 55 0.0012 29.4 11.1 86 223-308 77-167 (224)
43 PF10111 Glyco_tranf_2_2: Glyc 71.9 91 0.002 30.2 13.1 165 163-335 32-211 (281)
44 cd06427 CESA_like_2 CESA_like_ 71.5 86 0.0019 29.0 14.8 121 215-338 75-206 (241)
45 cd04191 Glucan_BSP_ModH Glucan 69.7 71 0.0015 30.8 11.7 125 206-338 76-225 (254)
46 cd04195 GT2_AmsE_like GT2_AmsE 68.4 84 0.0018 27.7 14.3 157 166-339 30-196 (201)
47 cd06437 CESA_CaSu_A2 Cellulose 67.3 1E+02 0.0022 28.2 15.3 119 216-340 79-209 (232)
48 PRK14583 hmsR N-glycosyltransf 67.1 1.6E+02 0.0035 30.5 19.0 161 165-338 104-275 (444)
49 PLN02726 dolichyl-phosphate be 64.0 1.3E+02 0.0027 28.1 15.3 156 165-337 40-211 (243)
50 cd02514 GT13_GLCNAC-TI GT13_GL 58.8 42 0.00091 34.1 8.0 81 214-307 87-174 (334)
51 cd04188 DPG_synthase DPG_synth 57.6 1.3E+02 0.0028 27.0 10.6 89 164-260 29-119 (211)
52 PF03071 GNT-I: GNT-I family; 57.1 1.5E+02 0.0032 31.4 11.8 84 214-310 177-272 (434)
53 PHA01631 hypothetical protein 56.6 28 0.0006 32.0 5.6 92 193-310 39-133 (176)
54 COG1216 Predicted glycosyltran 55.8 2.1E+02 0.0045 28.0 17.3 137 193-332 55-206 (305)
55 TIGR01556 rhamnosyltran L-rham 55.5 80 0.0017 30.1 9.2 124 215-341 65-198 (281)
56 COG4092 Predicted glycosyltran 45.0 87 0.0019 31.2 7.3 80 163-247 36-117 (346)
57 cd04190 Chitin_synth_C C-termi 42.6 32 0.00069 32.4 4.1 111 222-332 71-206 (244)
58 cd02522 GT_2_like_a GT_2_like_ 41.1 2.6E+02 0.0056 24.9 14.8 105 217-333 65-174 (221)
59 KOG2547 Ceramide glucosyltrans 40.5 37 0.0008 35.2 4.2 100 165-270 114-214 (431)
60 cd06913 beta3GnTL1_like Beta 1 36.9 3.1E+02 0.0068 24.6 11.6 43 217-259 77-119 (219)
61 TIGR03030 CelA cellulose synth 35.8 6.6E+02 0.014 28.0 14.6 132 207-342 212-356 (713)
62 PRK05454 glucosyltransferase M 34.9 3.6E+02 0.0078 30.2 11.2 198 125-338 122-350 (691)
63 PF04666 Glyco_transf_54: N-Ac 31.4 3E+02 0.0065 27.5 9.0 22 223-244 168-189 (297)
64 cd00761 Glyco_tranf_GTA_type G 31.4 2.7E+02 0.0058 22.1 14.1 33 216-248 69-101 (156)
65 TIGR03111 glyc2_xrt_Gpos1 puta 29.4 6.6E+02 0.014 26.0 14.4 124 215-341 122-264 (439)
66 PF09258 Glyco_transf_64: Glyc 28.1 70 0.0015 30.9 3.8 101 223-329 74-180 (247)
67 cd06438 EpsO_like EpsO protein 27.6 4.2E+02 0.009 23.1 12.5 89 214-306 70-169 (183)
68 PF13704 Glyco_tranf_2_4: Glyc 25.0 3.4E+02 0.0073 21.3 7.1 48 193-241 40-88 (97)
69 PF03452 Anp1: Anp1; InterPro 24.9 4E+02 0.0087 26.4 8.4 96 163-259 54-180 (269)
70 PRK10018 putative glycosyl tra 24.8 6.5E+02 0.014 24.5 11.6 33 217-249 78-110 (279)
71 PRK11498 bcsA cellulose syntha 21.6 1.3E+03 0.028 26.7 13.3 126 210-339 326-464 (852)
72 PF03742 PetN: PetN ; InterPr 21.0 86 0.0019 20.5 1.9 23 16-38 4-26 (29)
73 PF06072 Herpes_US9: Alphaherp 20.9 85 0.0018 24.0 2.2 16 21-36 42-57 (60)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=5.9e-109 Score=827.03 Aligned_cols=396 Identities=70% Similarity=1.207 Sum_probs=365.8
Q ss_pred CCccccCCCcccCCCCchhHHHHHHHHHHhhHhhhcccCCCCCcCccccccccC--------ccCCchhh---h-hcccc
Q 016036 1 MSFKSTGGEFASRNLIPRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISKT--------EEIENPEL---A-VKHES 68 (396)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~---~-~~~~~ 68 (396)
||.|+||+++++++.||+||+++||++|||+|++||||||..||+.+..+.++. ..||++++ | .++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 80 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDS 80 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccch
Confidence 899999999999999999999999999999999999999999998887665433 23898765 2 24588
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccCCCCCCCCcccCCCCCCCCeeEEEEEeCCCCCHHHHHHHHH
Q 016036 69 NNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRAERDSVSLSHPVKGTSNISGSMLKRKYFMVIGINTAFSSRKRRDSVRA 148 (396)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LlI~V~S~p~~~~rR~aIR~ 148 (396)
++||+||++||+|||+|+|+|+.||||||+|++.+..+.++.|.+++....+...+++++|||+|+|+|+|++||++||+
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 81 KDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred hHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999977766766665543333345567889999999999999999999999
Q ss_pred HhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCchhHHHHHHHHHHHhcCCceEE
Q 016036 149 TWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFY 228 (396)
Q Consensus 149 TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~ 228 (396)
|||++++.+.+++.+.+|+++||+|++.++++.++++|++|+++|||||++||+|+|.|||+||+++|+||.++++|+||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99999877677777899999999999987667899999999999999999999999999999999999999999999999
Q ss_pred EEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHH
Q 016036 229 IKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS 308 (396)
Q Consensus 229 lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~ 308 (396)
+|+|||+|||+++|+.+|.+++.++++|+|||+++|++.+++.|||+|++|+||++++.|||||+|+|||||+|+|++|+
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~ 320 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYIS 320 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHH
Confidence 99999999999999999998877788999999989988778889999999999988999999999999999999999999
Q ss_pred HhccccCCCCchhHHHHHHHhcCCCeEecCCCcccCCCCCcccccccCCcccccccccccccchhhHHHHHhhccCchhH
Q 016036 309 INQHLLHKYANEDVSLGSWFIGLDVEHVDDRRLCCGTPPDCEWKAQLGKTCVATFDWRCSGICKSVERIKEVHELCGEGE 388 (396)
Q Consensus 309 ~~~~~l~~~~~EDV~vG~~l~~L~v~~i~~~~f~~~~~~~~ewk~~~~~~C~~sf~~~~~g~c~~~~~~~~vH~~~p~~~ 388 (396)
.+...++.|++|||+||+||++|+|+|+|+++|||+++|+|+||++++++|+++|||+|||+|++.+||.++|+.|+|+.
T Consensus 321 ~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~ 400 (408)
T PLN03193 321 INQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGE 400 (408)
T ss_pred hChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcC
Q 016036 389 DTLWRASF 396 (396)
Q Consensus 389 ~~~W~~~~ 396 (396)
.++|+++|
T Consensus 401 ~~~~~~~~ 408 (408)
T PLN03193 401 NALWSATF 408 (408)
T ss_pred ccceeecC
Confidence 99999886
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-72 Score=526.42 Aligned_cols=265 Identities=68% Similarity=1.140 Sum_probs=255.5
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEec-cc
Q 016036 124 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-HI 202 (396)
Q Consensus 124 ~~~~~LlI~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ld-f~ 202 (396)
+++++++|+|.|++++.+||++||+||+++++.+++++.+++|.++||||+. +.+++++++|++|+++|+|+|.+| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~-~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTA-TLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccC-CccHHHHHHHHHHHHhcCCeEeechhH
Confidence 6789999999999999999999999999999999999999999999999994 457899999999999999999999 99
Q ss_pred ccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCccccCcccccC
Q 016036 203 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFG 282 (396)
Q Consensus 203 DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p~~~~f~ 282 (396)
|+|.+|+.||+.+|.+|..+|+++||+|+|||+|||++.|...|++++.+|++|||||++|||+.+|++|||+|+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCCCeEecCCCcccCCCCCcccccccCCccccc
Q 016036 283 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDRRLCCGTPPDCEWKAQLGKTCVAT 362 (396)
Q Consensus 283 d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~i~~~~f~~~~~~~~ewk~~~~~~C~~s 362 (396)
+.++ |+||+.|++||||++||.+|+.|+..++.|.+|||++|.||++|+|+|+|++++||+++ +++.+++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 8777 99999999999999999999999999999999999999999999999999999999865 77899999999
Q ss_pred ccccccccchhhHHHHHhhccCchhHHHhhhhcC
Q 016036 363 FDWRCSGICKSVERIKEVHELCGEGEDTLWRASF 396 (396)
Q Consensus 363 f~~~~~g~c~~~~~~~~vH~~~p~~~~~~W~~~~ 396 (396)
|+|+|+|+|++..||..+|..|.+...+.|.+.|
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999999987754
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.1e-54 Score=453.36 Aligned_cols=235 Identities=22% Similarity=0.343 Sum_probs=207.7
Q ss_pred CCCeeEEEEEeCCCCCHHHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccc
Q 016036 124 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIE 203 (396)
Q Consensus 124 ~~~~~LlI~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~D 203 (396)
+++++|||+|+|+|+|++||+|||+|||+... ..+..++++|++|.+. ++.++++|++|+++||||||+||+|
T Consensus 382 ~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~D 454 (636)
T PLN03133 382 KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFVD 454 (636)
T ss_pred CCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeeec
Confidence 56799999999999999999999999999642 2345699999999987 4688999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEee-cCcccccCCCccccCcccccC
Q 016036 204 GYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKFG 282 (396)
Q Consensus 204 sY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~-~~pv~r~~~~K~~~p~~~~f~ 282 (396)
+|+|||+||++++.|+..|++++|+||+|||+|||+++|+++|......+++|+|++. ...|+|++.+|||+|...|
T Consensus 455 sY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey-- 532 (636)
T PLN03133 455 YYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW-- 532 (636)
T ss_pred hhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC--
Confidence 9999999999999999999999999999999999999999999887667789999996 4578899999999998777
Q ss_pred CCCCCcCCCcCCCceeeCHHHHHHHHHhc--cccCCCCchhHHHHHHHh-----cCCCeEecCCCcccCCCCCccccccc
Q 016036 283 EIGNKYFRHATGQLYALSKDLATYISINQ--HLLHKYANEDVSLGSWFI-----GLDVEHVDDRRLCCGTPPDCEWKAQL 355 (396)
Q Consensus 283 d~~~~YP~y~~G~gYvlS~dla~~I~~~~--~~l~~~~~EDV~vG~~l~-----~L~v~~i~~~~f~~~~~~~~ewk~~~ 355 (396)
|.+.|||||+|+|||||+++|++|+.++ ..++.|++||||+|+|+. ++.+.+.++.+||+
T Consensus 533 -p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~------------ 599 (636)
T PLN03133 533 -PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYN------------ 599 (636)
T ss_pred -CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccC------------
Confidence 8899999999999999999999998864 579999999999999985 55677788777753
Q ss_pred CCcccccccccccccchhhHHHHHhhccCchhHHHhhhhc
Q 016036 356 GKTCVATFDWRCSGICKSVERIKEVHELCGEGEDTLWRAS 395 (396)
Q Consensus 356 ~~~C~~sf~~~~~g~c~~~~~~~~vH~~~p~~~~~~W~~~ 395 (396)
+.|. ..++.+|...|++|..+|+..
T Consensus 600 -~~C~--------------~~~i~~H~~sP~eM~~lW~~l 624 (636)
T PLN03133 600 -EGCK--------------DGYVVAHYQSPREMLCLWQKL 624 (636)
T ss_pred -CcCC--------------CCeEEEecCCHHHHHHHHHHH
Confidence 1242 235679999999999999863
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-52 Score=418.87 Aligned_cols=239 Identities=24% Similarity=0.333 Sum_probs=216.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccC
Q 016036 126 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 205 (396)
Q Consensus 126 ~~~LlI~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY 205 (396)
.++++++|.|+++|++||++||+|||+... ..+..++++|++|.+.+.+ .+++.|.+|++.|||||++||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999963 3567899999999998543 6689999999999999999999999
Q ss_pred CchhHHHHHHHHHHHh-cCCceEEEEeccceeEeHHHHHHHHHhc-CCCCceEEEEee-cCcccccCCCccccCcccccC
Q 016036 206 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKFG 282 (396)
Q Consensus 206 ~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVnv~~L~~~L~~~-~~~~~lY~G~~~-~~pv~r~~~~K~~~p~~~~f~ 282 (396)
.|||+||++++.|+.. |++|+|++|+|||+|||+++|+.+|..+ .+.+.+|.|.+. ..+|+|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999986 9999999999999999999999999999 788899999986 5688999999999999888
Q ss_pred CCCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcC-CCeEecCCCcccCCCCCcccccccCCcccc
Q 016036 283 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGL-DVEHVDDRRLCCGTPPDCEWKAQLGKTCVA 361 (396)
Q Consensus 283 d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L-~v~~i~~~~f~~~~~~~~ewk~~~~~~C~~ 361 (396)
|...||+||+|+|||+|+++|+.|+.++.+++.+++|||++|+|++.. |+.+++...|... + ...+
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~-------~-~~~~---- 312 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEI-------P-LSFD---- 312 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccccc-------c-ccCC----
Confidence 888999999999999999999999999999999999999999999877 9999998875321 1 1122
Q ss_pred cccccccccchhhHHHHHhhccCchhHHHhhhh
Q 016036 362 TFDWRCSGICKSVERIKEVHELCGEGEDTLWRA 394 (396)
Q Consensus 362 sf~~~~~g~c~~~~~~~~vH~~~p~~~~~~W~~ 394 (396)
.|. ++.++++|...|++|..+|+.
T Consensus 313 --------~~~-~~~~~~~H~~~p~e~~~~w~~ 336 (349)
T KOG2287|consen 313 --------PCC-YRDLLAVHRLSPNEMIYLWKK 336 (349)
T ss_pred --------CCc-ccceEEEecCCHHHHHHHHHH
Confidence 334 789999999999999999985
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=1.7e-48 Score=359.87 Aligned_cols=191 Identities=29% Similarity=0.407 Sum_probs=173.7
Q ss_pred HHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCchhHHHHHHHHHHH
Q 016036 141 KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAV 220 (396)
Q Consensus 141 ~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~ 220 (396)
+||++||+|||+... ....+++++||+|.+.+++..++++|.+|+++|+||||+||.|+|.|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999863 235889999999999865678899999999999999999999999999999999999998
Q ss_pred h-cCCceEEEEeccceeEeHHHHHHHHHhc--C-CCCceEEEEeecCcccccCCCccccCcccccCCCCCCcCCCcCCCc
Q 016036 221 S-MWDAEFYIKVDDDVHVNLATLGMTLAAH--R-TKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQL 296 (396)
Q Consensus 221 ~-~~~a~f~lKvDDDvfVnv~~L~~~L~~~--~-~~~~lY~G~~~~~pv~r~~~~K~~~p~~~~f~d~~~~YP~y~~G~g 296 (396)
+ |++++|++|+|||+|||+++|..+|... . ....+|.+++..+++.|++.+|||+|+..| |.+.|||||+|++
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 6 8889999999999999999999999987 2 334455555667888999999999999888 7889999999999
Q ss_pred eeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCCCeEecCC
Q 016036 297 YALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDR 339 (396)
Q Consensus 297 YvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~i~~~ 339 (396)
|+||+++|+.|+.++..++.+++|||++|+|+.++||+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999975
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=1.5e-32 Score=272.72 Aligned_cols=193 Identities=19% Similarity=0.260 Sum_probs=159.7
Q ss_pred CCCCCCeeEEEEEeCCCCC--HHHHHHHHHHhccCccc-chhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEE
Q 016036 121 SMLKRKYFMVIGINTAFSS--RKRRDSVRATWMPQGEK-RKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFL 197 (396)
Q Consensus 121 ~~~~~~~~LlI~V~S~p~~--~~rR~aIR~TW~~~~~~-~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl 197 (396)
...++..++++||.|..++ +.||++.|+||.+-..- .+.+.-...+.++|++|..++.+-+++.+|.+|+++|+|||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 4567889999999999988 89999999999987542 22222234577899999998766699999999999999999
Q ss_pred Eecc------------------cccCCchhHHHHHHHHHHHh-cCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEE
Q 016036 198 RLEH------------------IEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG 258 (396)
Q Consensus 198 ~ldf------------------~DsY~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G 258 (396)
++|| .|++.|+|+||+++|+||.+ ||+++|++|+|||+|||+++++++|+.. ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 77788999999999999996 8999999999999999999999999665 45669999
Q ss_pred EeecC-cccccCCCccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhccc--c---------------CCCCch
Q 016036 259 CMKSG-PVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL--L---------------HKYANE 320 (396)
Q Consensus 259 ~~~~~-pv~r~~~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~--l---------------~~~~~E 320 (396)
.+... .+. .+.|||||+|+||+||+|+|+.|+...+. + -.+.+|
T Consensus 233 ~v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~E 294 (382)
T PTZ00210 233 RYNYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYE 294 (382)
T ss_pred eeCCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCch
Confidence 87521 111 12379999999999999999999987442 2 235799
Q ss_pred hHHHHHHH-hcCC
Q 016036 321 DVSLGSWF-IGLD 332 (396)
Q Consensus 321 DV~vG~~l-~~L~ 332 (396)
|+.+|.+| .++.
T Consensus 295 DiMvG~vLr~~~k 307 (382)
T PTZ00210 295 DVMVGMILREKVV 307 (382)
T ss_pred HHHHHHHHHHhcC
Confidence 99999999 4554
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.93 E-value=7e-27 Score=192.99 Aligned_cols=85 Identities=42% Similarity=0.736 Sum_probs=73.5
Q ss_pred chhHHHHHHHHHHhhHhhhcccCCCCCcCccccccccC---------ccCCchhhhhccccchhhHHHHHHHHHHHHHHH
Q 016036 17 PRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISKT---------EEIENPELAVKHESNNNTEKLAMVEQAIQSQDK 87 (396)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
|+||+++||++|||||+|||||||..||+++....+.. ..||+.+..++.+++++|+||+|||+|||+|||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq~LdK 80 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQSLDK 80 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999988776643221 148987653356899999999999999999999
Q ss_pred hhhhhhhhhhhhhh
Q 016036 88 RLDGLKTKITAVRA 101 (396)
Q Consensus 88 ~~~~le~el~~~~~ 101 (396)
+||+||||||+||+
T Consensus 81 tIS~LEMELAaARa 94 (95)
T PF13334_consen 81 TISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999997
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.78 E-value=9.3e-19 Score=168.76 Aligned_cols=191 Identities=17% Similarity=0.190 Sum_probs=100.6
Q ss_pred eEEEEEeCCCCCH-HHHHHHHHHhccCcccchhhhccCceEEEE-EeccCCCCCcchHHHHHHHHhHcCCEEEecccccC
Q 016036 128 FMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRF-VIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 205 (396)
Q Consensus 128 ~LlI~V~S~p~~~-~rR~aIR~TW~~~~~~~~~l~~~~~i~v~F-vlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY 205 (396)
.++|+|+|++++. .|-.+|++||++.+.. ..| +...+ +..|..+ ...+++.-+...++
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~-----------~~~ifsd~~-------d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNK-----------QTFIFSDAE-------DPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGG-----------GEEEEESS---------HHHHHH--HGGGEEE-------
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCC-----------ceEEecCcc-------ccccccc--cccccccCCCcchh
Confidence 6889999999865 5568999999999742 124 23221 2333333 23355555555555
Q ss_pred CchhHHHHHHHHHHHh-cCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeec-CcccccCCCccccCcccccCC
Q 016036 206 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKS-GPVLARKGVKYYEPEYWKFGE 283 (396)
Q Consensus 206 ~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~-~pv~r~~~~K~~~p~~~~f~d 283 (396)
...+++.++.+.+... .++++|++++|||+||++++|..+|...++..++|+|+... .+...-.......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 5445555555555332 46889999999999999999999999999999999999752 22211000000000
Q ss_pred CCCCcCCCc-CCCceeeCHHHHHHHHHh---ccccCCC----CchhHHHHHHHhc-CCCeEecCCCcccCCC
Q 016036 284 IGNKYFRHA-TGQLYALSKDLATYISIN---QHLLHKY----ANEDVSLGSWFIG-LDVEHVDDRRLCCGTP 346 (396)
Q Consensus 284 ~~~~YP~y~-~G~gYvlS~dla~~I~~~---~~~l~~~----~~EDV~vG~~l~~-L~v~~i~~~~f~~~~~ 346 (396)
....| .|+ +|+||+||+.++++|... ....... ..||+.+|.|+.. |||..++.+.|+...+
T Consensus 140 ~~~~~-~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 KDSGF-WFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred CcCce-EeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 11122 344 679999999999999542 2222222 3899999999988 9999999999976544
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.66 E-value=5.5e-16 Score=156.50 Aligned_cols=169 Identities=22% Similarity=0.312 Sum_probs=131.5
Q ss_pred CCCeeEEEEEeCCCCCHHH-HHHHHHHhccCcccchhhhccCceEEEEEe---ccCCCCCcchHHHHHHHHhHcCCEEEe
Q 016036 124 KRKYFMVIGINTAFSSRKR-RDSVRATWMPQGEKRKMLEEAKGIIIRFVI---GHSATSGGILDKAIDAEEKMHGDFLRL 199 (396)
Q Consensus 124 ~~~~~LlI~V~S~p~~~~r-R~aIR~TW~~~~~~~~~l~~~~~i~v~Fvl---G~s~~~~~~~~~~I~~E~~~~~DIl~l 199 (396)
.++..+++.|.|++.+... -+++-+||+++++. ..|+- ..... .+. .|..
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~~--------------~f~-~v~~ 141 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDDS--------------RFP-TVYY 141 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCCC--------------cCc-eeec
Confidence 5668999999999887655 57999999999862 33444 33221 121 3478
Q ss_pred cccccCCchhHHHHHHHHHHHh--cCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCccccCc
Q 016036 200 EHIEGYLELSAKTKTYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPE 277 (396)
Q Consensus 200 df~DsY~nLt~Ktl~~~~wa~~--~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p~ 277 (396)
+..|+|+++..||..+|+++.. ..+++|++|+|||||+.++||..+|...++.+++|+|+.. |.|...
T Consensus 142 ~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~----------~~~~~~ 211 (364)
T KOG2246|consen 142 NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS----------KSYFQN 211 (364)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc----------cccccc
Confidence 8999999999999999999984 4799999999999999999999999999999999999863 112211
Q ss_pred ccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhcc-----ccCCCC--chhHHHHHHHhcCCCeEecCC
Q 016036 278 YWKFGEIGNKYFRHATGQLYALSKDLATYISINQH-----LLHKYA--NEDVSLGSWFIGLDVEHVDDR 339 (396)
Q Consensus 278 ~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~-----~l~~~~--~EDV~vG~~l~~L~v~~i~~~ 339 (396)
.| ..+|+||++|+++.+.+++... ....++ .||+-+|.||+.+||...|.+
T Consensus 212 ---------~y--~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 212 ---------GY--SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDER 269 (364)
T ss_pred ---------cc--ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCch
Confidence 11 2478999999999998877422 223343 899999999999999888774
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.13 E-value=7.1e-10 Score=115.22 Aligned_cols=179 Identities=18% Similarity=0.178 Sum_probs=112.9
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCC--CcchHHHHHHHHhHcCCEEEecccc
Q 016036 127 YFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATS--GGILDKAIDAEEKMHGDFLRLEHIE 203 (396)
Q Consensus 127 ~~LlI~V~S~p~~~-~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~--~~~~~~~I~~E~~~~~DIl~ldf~D 203 (396)
--++++|.++.+.. +|+..|+.+|.+... . ..+|+.....+. +..+- - +.+- .|
T Consensus 122 ~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~~~~~~~P-----------~-i~is-~d 178 (537)
T PLN03153 122 NHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPEEGDDSLP-----------P-IMVS-ED 178 (537)
T ss_pred ccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCCCCcCCCC-----------C-EEeC-CC
Confidence 46888898777765 566999999998531 1 134544332210 00000 0 1110 11
Q ss_pred c----CCc---hhHH--HHHHHHHHHh--cCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCc
Q 016036 204 G----YLE---LSAK--TKTYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVK 272 (396)
Q Consensus 204 s----Y~n---Lt~K--tl~~~~wa~~--~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K 272 (396)
+ |.| .... +..+...+.. .++++||+++|||+|+.+++|+..|...++++..|+|......
T Consensus 179 ~s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~-------- 250 (537)
T PLN03153 179 TSRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH-------- 250 (537)
T ss_pred cccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc--------
Confidence 1 222 2221 1113333332 5899999999999999999999999999999999999763110
Q ss_pred cccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhccc-cCCC---CchhHHHHHHHhcCCCeEecCCCcccC
Q 016036 273 YYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL-LHKY---ANEDVSLGSWFIGLDVEHVDDRRLCCG 344 (396)
Q Consensus 273 ~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~-l~~~---~~EDV~vG~~l~~L~v~~i~~~~f~~~ 344 (396)
+...+| .|--.-+|+||+||+.+++.|...... ...+ .-+|.-||.|+..+||...+.++|...
T Consensus 251 ---~qn~~f-----~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 251 ---SANSYF-----SHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred ---cccccc-----ccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 000011 011124899999999999998875322 2222 358888999999999999999888653
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00015 Score=75.41 Aligned_cols=195 Identities=16% Similarity=0.161 Sum_probs=123.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCc
Q 016036 128 FMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLE 207 (396)
Q Consensus 128 ~LlI~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~n 207 (396)
.|+++|+|. ..---+|-.|=+..-. ++.|+++.+... .|.-++..+-.|..
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp-----------rv~~F~~~~~i~---------------~~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP-----------RVHLFADSSRID---------------NDLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc-----------eeEEeecccccc---------------ccHhhccccCcccc
Confidence 456677772 2455677777666532 467888776532 22333333344433
Q ss_pred hhHHHH-HHHHHHHh--cCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCccccCcccccCCC
Q 016036 208 LSAKTK-TYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEI 284 (396)
Q Consensus 208 Lt~Ktl-~~~~wa~~--~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p~~~~f~d~ 284 (396)
-..|+. +.++++.+ .-++||++-+-|++|||...|+.++....-+.++|+|-- .--| .
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe------------------~~~g-s 138 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEE------------------AEDG-S 138 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchh------------------hhCc-c
Confidence 344544 34566654 469999999999999999999999998887889999821 0001 1
Q ss_pred CCCcCCCc-CCCceeeCHHHHHHHHHhccccC---CCCchhHHHHHHHh---cCCCeEecCC--CcccC--CCC----Cc
Q 016036 285 GNKYFRHA-TGQLYALSKDLATYISINQHLLH---KYANEDVSLGSWFI---GLDVEHVDDR--RLCCG--TPP----DC 349 (396)
Q Consensus 285 ~~~YP~y~-~G~gYvlS~dla~~I~~~~~~l~---~~~~EDV~vG~~l~---~L~v~~i~~~--~f~~~--~~~----~~ 349 (396)
+ . | .|.||+||+.++..+-.|-.-.. .-.-.|+.+|.|++ +++.++.|.. ++... +|. ..
T Consensus 139 ~-r----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~ 213 (681)
T KOG3708|consen 139 G-R----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIP 213 (681)
T ss_pred C-c----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccch
Confidence 1 1 5 57999999999999988744322 22467899999994 5555554442 23221 121 23
Q ss_pred ccccccCCcccccccccccccchhhHHHHHhhcc-CchhHHHhh
Q 016036 350 EWKAQLGKTCVATFDWRCSGICKSVERIKEVHEL-CGEGEDTLW 392 (396)
Q Consensus 350 ewk~~~~~~C~~sf~~~~~g~c~~~~~~~~vH~~-~p~~~~~~W 392 (396)
+|+. . -.+++..+||.+ +|++|+++=
T Consensus 214 e~~~---s--------------~aFr~A~tv~pv~~p~d~yrLH 240 (681)
T KOG3708|consen 214 EWEG---S--------------PAFRSALTVHPVLSPADMYRLH 240 (681)
T ss_pred hhcC---C--------------hHHhhhhccCccCCHHHHHHHH
Confidence 4432 1 127888999988 788888764
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.34 E-value=0.32 Score=44.52 Aligned_cols=93 Identities=17% Similarity=0.143 Sum_probs=51.1
Q ss_pred EEEeCCCCCHHHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEec-----ccccC
Q 016036 131 IGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-----HIEGY 205 (396)
Q Consensus 131 I~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ld-----f~DsY 205 (396)
|.|.|-+.+.+||+.|.+..... ++.+.|+-|.... .+.. .+....+..-.... ..-+-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~---~l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGR---DLSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeeccc---ccch--HHHHHHhhhhhhhccccccCCcce
Confidence 34667788899999997766543 3456677666542 1111 11111121111100 00111
Q ss_pred CchhHHHHHHHHHHHhcCCceEEEEeccceeEeHH
Q 016036 206 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 240 (396)
Q Consensus 206 ~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~ 240 (396)
-.=.+-.+..++-+++. +.++.+-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHHc-CCCeEEEEecccccccc
Confidence 11134556666776653 67899999999999965
No 13
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.93 E-value=0.86 Score=41.73 Aligned_cols=184 Identities=11% Similarity=-0.015 Sum_probs=82.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCE--EEecccccCC
Q 016036 129 MVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF--LRLEHIEGYL 206 (396)
Q Consensus 129 LlI~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DI--l~ldf~DsY~ 206 (396)
+.|+|.+.-....-++.|+.--... ...+.++++...+. +.....+++-...+... -.+... .
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~---------~~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~---~ 67 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQD---------YPRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP---R 67 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSH---------HHTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE------
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCC---------CCCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---C
Confidence 4455554433333445555444321 12356666664443 22333444444555542 222211 2
Q ss_pred chh--HHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhc-CCCCceEEEEeec--Cc-cccc----CCCccccC
Q 016036 207 ELS--AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCMKS--GP-VLAR----KGVKYYEP 276 (396)
Q Consensus 207 nLt--~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~-~~~~~lY~G~~~~--~p-v~r~----~~~K~~~p 276 (396)
|.- .|.. .+.++.+..+.+|++.+|||+.+.++.|..++... .+.-.+..|.+.. +. .... ....|+..
T Consensus 68 ~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (228)
T PF13641_consen 68 NPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLR 146 (228)
T ss_dssp -HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTT
T ss_pred CCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhh
Confidence 222 3333 34666554579999999999999999988888776 3333333344321 11 1000 00011111
Q ss_pred cccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCCCe
Q 016036 277 EYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 334 (396)
Q Consensus 277 ~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 334 (396)
. ..+..... . .++.|++.++.++++..+-.-.. ....||..++.-+...|..
T Consensus 147 ~-~~~~~~~~-~-~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 147 F-RSGRRALG-V-AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp S--TT-B------S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred h-hhhhcccc-e-eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 0 01111111 1 34679999999999998853222 3446999999888666543
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.70 E-value=1.1 Score=45.52 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=83.9
Q ss_pred ceEEEEEeccCCCCCcchHHHHHHHHhHcCC--EEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHH
Q 016036 165 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 242 (396)
Q Consensus 165 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~D--Il~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L 242 (396)
.+.++|+...++ +.....+++=.+.|.+ +..+.- ..-.....|.-...+ +.+..+.++++.+|+|+.+..+.|
T Consensus 70 ~~EIivvdd~s~---D~t~~iv~~~~~~~p~~~i~~v~~-~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPD---DPALAVVRRLRADFPDADIDLVID-ARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCC---CcHHHHHHHHHHhCCCCceEEEEC-CCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 367777776554 2222333333455665 322211 111122346544443 344458999999999999999999
Q ss_pred HHHHHhcCCCCce-EEEEe-ecCcccccCCC--------ccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhcc
Q 016036 243 GMTLAAHRTKPRV-YVGCM-KSGPVLARKGV--------KYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQH 312 (396)
Q Consensus 243 ~~~L~~~~~~~~l-Y~G~~-~~~pv~r~~~~--------K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~ 312 (396)
...+.... .+++ .+++. ...+. ..... -++.|.... ... ..-+.+|.|+.+++.+++.+.+---..
T Consensus 145 ~~lv~~~~-~~~v~~V~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~G~~~a~RR~~l~~iGGf~~ 220 (373)
T TIGR03472 145 RQVVAPLA-DPDVGLVTCLYRGRPV-PGFWSRLGAMGINHNFLPSVMV-ARA-LGRARFCFGATMALRRATLEAIGGLAA 220 (373)
T ss_pred HHHHHHhc-CCCcceEeccccCCCC-CCHHHHHHHHHhhhhhhHHHHH-HHh-ccCCccccChhhheeHHHHHHcCChHH
Confidence 88887763 2222 22222 11110 00000 011121000 000 011345889999999999988753322
Q ss_pred ccCCCCchhHHHHHHHhcCCC
Q 016036 313 LLHKYANEDVSLGSWFIGLDV 333 (396)
Q Consensus 313 ~l~~~~~EDV~vG~~l~~L~v 333 (396)
. ...-.||+.+|.-+...|.
T Consensus 221 ~-~~~~~ED~~l~~~i~~~G~ 240 (373)
T TIGR03472 221 L-AHHLADDYWLGELVRALGL 240 (373)
T ss_pred h-cccchHHHHHHHHHHHcCC
Confidence 1 2223699999999866653
No 15
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.35 E-value=1.2 Score=40.30 Aligned_cols=167 Identities=16% Similarity=0.034 Sum_probs=84.9
Q ss_pred eEEEEEeccCCCCCcchHHHHH-HHHhHcCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHH
Q 016036 166 IIIRFVIGHSATSGGILDKAID-AEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 244 (396)
Q Consensus 166 i~v~FvlG~s~~~~~~~~~~I~-~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~ 244 (396)
+.++.|-+.|. ++ ....+. .....+..+..++..+ -.|. -|. ..+.++....+.+|++.+|+|..+..+.|..
T Consensus 29 ~eiivvdd~s~--d~-t~~~~~~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHST--DG-TVQILEFAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCC--cC-hHHHHHHHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 56777766554 22 333444 2222233455555443 2232 222 2345555555789999999999999888888
Q ss_pred HHHhcCC-CCceEEEEeecCcc---ccc-CCCccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCc
Q 016036 245 TLAAHRT-KPRVYVGCMKSGPV---LAR-KGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYAN 319 (396)
Q Consensus 245 ~L~~~~~-~~~lY~G~~~~~pv---~r~-~~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~ 319 (396)
++..... ...++.|.....+. ... ....+........+.....+|..+.|+++++++++...+---.... ....
T Consensus 103 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~~-~~~~ 181 (229)
T cd04192 103 FVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGND-HIAS 181 (229)
T ss_pred HHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCcccc-cccc
Confidence 8875432 23345554321100 000 0000000000000001234555678999999999998875432222 2345
Q ss_pred hhHHHHHHH--hcC-CCeEecCC
Q 016036 320 EDVSLGSWF--IGL-DVEHVDDR 339 (396)
Q Consensus 320 EDV~vG~~l--~~L-~v~~i~~~ 339 (396)
||..++.-+ .+. .+....++
T Consensus 182 eD~~~~~~~~~~g~~~~~~~~~~ 204 (229)
T cd04192 182 GDDELLLAKVASKYPKVAYLKNP 204 (229)
T ss_pred CCHHHHHHHHHhCCCCEEEeeCc
Confidence 776665543 444 44554443
No 16
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.49 E-value=4.6 Score=37.04 Aligned_cols=160 Identities=11% Similarity=-0.038 Sum_probs=81.2
Q ss_pred CceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHH
Q 016036 164 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 243 (396)
Q Consensus 164 ~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~ 243 (396)
..+.++.+-+.+. +.....++...+++..+....-.+. .. . .++..+.+..+.+|++.+|+|..+.++.|.
T Consensus 30 ~~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~~~--~~---~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNPKR--IQ---S-AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCCCC--Cc---h-HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 3456776666554 2334445544444433433332211 11 1 245555555588999999999999988888
Q ss_pred HHHHhcCCCC-ceEEEEeec---Ccccc----cCCCccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhccccC
Q 016036 244 MTLAAHRTKP-RVYVGCMKS---GPVLA----RKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLH 315 (396)
Q Consensus 244 ~~L~~~~~~~-~lY~G~~~~---~pv~r----~~~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~ 315 (396)
..+......+ .+..|.... .+... .... ++....-.+.-....+-.++.|++.++++++...+......
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSS-PLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhc-hhccCCccccccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8886543323 333444321 11100 0000 00000000000000101145778889999998877432222
Q ss_pred CCCchhHHHHHHHhcCCCeE
Q 016036 316 KYANEDVSLGSWFIGLDVEH 335 (396)
Q Consensus 316 ~~~~EDV~vG~~l~~L~v~~ 335 (396)
....||..++.-+...|.+.
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred cCccchhHHHHHHHHcCcEE
Confidence 23469999987776555443
No 17
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.34 E-value=5 Score=40.91 Aligned_cols=166 Identities=14% Similarity=0.050 Sum_probs=85.1
Q ss_pred ceEEEEEeccCCCCCcchHHHHHHHHhHcC---CEEEecccccCCchhHHHH---HHHHHHHh-cCCceEEEEeccceeE
Q 016036 165 GIIIRFVIGHSATSGGILDKAIDAEEKMHG---DFLRLEHIEGYLELSAKTK---TYFATAVS-MWDAEFYIKVDDDVHV 237 (396)
Q Consensus 165 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~---DIl~ldf~DsY~nLt~Ktl---~~~~wa~~-~~~a~f~lKvDDDvfV 237 (396)
.+.+++|-..|.+ ++ ...+++-.+++. .+..+...+.-.+-.-|.. .+++.|.. +.+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~T-~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--GT-ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--cH-HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 3677777776652 22 223332223343 3444443222222234432 34455443 3458999999999999
Q ss_pred eHHHHHHHHHhcCCCC-ceEEEEeecCcccccCCCccccC-----------cccccCCCCCCcCCCcCCCceeeCHHHHH
Q 016036 238 NLATLGMTLAAHRTKP-RVYVGCMKSGPVLARKGVKYYEP-----------EYWKFGEIGNKYFRHATGQLYALSKDLAT 305 (396)
Q Consensus 238 nv~~L~~~L~~~~~~~-~lY~G~~~~~pv~r~~~~K~~~p-----------~~~~f~d~~~~YP~y~~G~gYvlS~dla~ 305 (396)
.++.|...+......+ .+..|...... .....+...| -.+. .+ .......+.|++.++++++.+
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~G~~~lirr~~~~ 222 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPAFVFFFQKLYPFRWV-ND-PRRRTAAAAGGCILIRREALE 222 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHHHHHHHHHhcchhhh-cC-CCccceeecceEEEEEHHHHH
Confidence 9988888886654322 23222221100 0000000001 0110 01 112234568999999999998
Q ss_pred HHHHhccccCCCCchhHHHHHHHhcCC--CeEecC
Q 016036 306 YISINQHLLHKYANEDVSLGSWFIGLD--VEHVDD 338 (396)
Q Consensus 306 ~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~ 338 (396)
.+---..... ...||+.++.-+...| +.....
T Consensus 223 ~vGGf~~~~~-~~~ED~~L~~r~~~~G~~v~~~~~ 256 (384)
T TIGR03469 223 RIGGIAAIRG-ALIDDCTLAAAVKRSGGRIWLGLA 256 (384)
T ss_pred HcCCHHHHhh-CcccHHHHHHHHHHcCCcEEEEec
Confidence 8733222212 2479999999886554 444333
No 18
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=93.11 E-value=5.1 Score=38.88 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=67.9
Q ss_pred HHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEE-Eee--cC-cc-cccC------------CCccccCcc
Q 016036 216 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG-CMK--SG-PV-LARK------------GVKYYEPEY 278 (396)
Q Consensus 216 ~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G-~~~--~~-pv-~r~~------------~~K~~~p~~ 278 (396)
...+.+.-..+|++..|+|+.+..+-|..++......+...+| .+. .+ .. .... ...|.....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 3444444578999999999999987777777655433333332 221 01 00 0000 001111100
Q ss_pred cc--cCC-CCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHH--HhcCCCeEecCCCc
Q 016036 279 WK--FGE-IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSW--FIGLDVEHVDDRRL 341 (396)
Q Consensus 279 ~~--f~d-~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~--l~~L~v~~i~~~~f 341 (396)
.. ... +.....++++|++.++++++...+---...+..+..||+-+..= ..|..+..+.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v 222 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRV 222 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEE
Confidence 00 000 01233456789999999999998855444455555799877544 45555555554433
No 19
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=92.53 E-value=7.7 Score=34.93 Aligned_cols=133 Identities=19% Similarity=0.135 Sum_probs=78.0
Q ss_pred eEEEEEeccCCCCCcchHHHHHHHHhHcC--CEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHH
Q 016036 166 IIIRFVIGHSATSGGILDKAIDAEEKMHG--DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 243 (396)
Q Consensus 166 i~v~FvlG~s~~~~~~~~~~I~~E~~~~~--DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~ 243 (396)
+.+++|...+. +++ ...+++-.+.|. ++......... ....|.- .+..+.+....+|++..|+|+.+..+.|.
T Consensus 31 ~eiivVdd~s~--d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED--DPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc--chH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 67888877665 222 334444445554 33222221111 1223433 23445555578999999999999988888
Q ss_pred HHHHhcCCCCceEEEEeecCcccccCCCccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHH
Q 016036 244 MTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVS 323 (396)
Q Consensus 244 ~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~ 323 (396)
..+..... +.+ |.+.+ .++.|++.++.+++.+.+---.. ...+..||..
T Consensus 106 ~l~~~~~~-~~~--~~v~~---------------------------~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~~ 154 (196)
T cd02520 106 RMVAPLMD-PGV--GLVTC---------------------------LCAFGKSMALRREVLDAIGGFEA-FADYLAEDYF 154 (196)
T ss_pred HHHHHhhC-CCC--CeEEe---------------------------ecccCceeeeEHHHHHhccChHH-HhHHHHHHHH
Confidence 77765421 211 22210 04678999999999988743321 2223479999
Q ss_pred HHHHHhcCCCe
Q 016036 324 LGSWFIGLDVE 334 (396)
Q Consensus 324 vG~~l~~L~v~ 334 (396)
++.-+...|.+
T Consensus 155 l~~rl~~~G~~ 165 (196)
T cd02520 155 LGKLIWRLGYR 165 (196)
T ss_pred HHHHHHHcCCe
Confidence 99888665533
No 20
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.84 E-value=3.8 Score=34.41 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=75.6
Q ss_pred EEEEeCCCCCHHHH-HHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCch
Q 016036 130 VIGINTAFSSRKRR-DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLEL 208 (396)
Q Consensus 130 lI~V~S~p~~~~rR-~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nL 208 (396)
+|-+.-.+....+- +++++. . ...+.++++-..+. +.....+++-.+....+..+...+.. .+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q---~---------~~~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQ---T---------DPDFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHH---S---------GCEEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HH
T ss_pred EEEeeCCHHHHHHHHHHHhhc---c---------CCCEEEEEeccccc---cccccccccccccccccccccccccc-cc
Confidence 33344344444443 567666 1 23455666665553 33444444444434555555554443 23
Q ss_pred hHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCC-CCceEEEEee--cCcc-cccCCC---ccccCccccc
Q 016036 209 SAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT-KPRVYVGCMK--SGPV-LARKGV---KYYEPEYWKF 281 (396)
Q Consensus 209 t~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~-~~~lY~G~~~--~~pv-~r~~~~---K~~~p~~~~f 281 (396)
..- +..+.+....+|++.+|||.++..+.|..++..... ...+.+|... .... ...... .+........
T Consensus 67 ~~~----~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (169)
T PF00535_consen 67 SAA----RNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIF 142 (169)
T ss_dssp HHH----HHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHH
T ss_pred ccc----ccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHH
Confidence 222 233333335559999999999998777666665543 3445556643 1111 000000 0111100000
Q ss_pred CCCCCCcCCCcCCCceeeCHHHHHHH
Q 016036 282 GEIGNKYFRHATGQLYALSKDLATYI 307 (396)
Q Consensus 282 ~d~~~~YP~y~~G~gYvlS~dla~~I 307 (396)
......-..++.|++.++++++.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 143 NNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HhhhcCCcccccccEEEEEHHHHHhh
Confidence 00112333467888999999888764
No 21
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=91.43 E-value=0.36 Score=44.06 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCC-CCceEEEEeecCcccccCCC---c---cccCcccccC
Q 016036 210 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT-KPRVYVGCMKSGPVLARKGV---K---YYEPEYWKFG 282 (396)
Q Consensus 210 ~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~-~~~lY~G~~~~~pv~r~~~~---K---~~~p~~~~f~ 282 (396)
.|+-..........+.++++-.|+|+.|+.+.|.+.+..... +-.+..|.....+.. .-.+ . .+.+.-+.
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~-~~~~~l~~~~~~~~~~~~~-- 93 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPAR-GFWSRLEAAFFNFLPGVLQ-- 93 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCc-CHHHHHHHHHHhHHHHHHH--
Confidence 566555544333368999999999999999999998877643 222222211111110 0000 0 01111111
Q ss_pred CCCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCCCeEecCC
Q 016036 283 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDR 339 (396)
Q Consensus 283 d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~i~~~ 339 (396)
.-...+++.|+.+++.+++++.+-- ...+..+--||..+|..+...|.+..-.+
T Consensus 94 --a~~~~~~~~G~~m~~rr~~L~~~GG-~~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 94 --ALGGAPFAWGGSMAFRREALEEIGG-FEALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred --HhcCCCceecceeeeEHHHHHHccc-HHHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 0123578999999999999987732 12223355899999999987776655544
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=90.86 E-value=8.2 Score=35.13 Aligned_cols=120 Identities=13% Similarity=-0.002 Sum_probs=68.0
Q ss_pred HHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCce--EEEEee--c-Ccc---cccC--CCccccCc-ccccCCC
Q 016036 216 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV--YVGCMK--S-GPV---LARK--GVKYYEPE-YWKFGEI 284 (396)
Q Consensus 216 ~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~l--Y~G~~~--~-~pv---~r~~--~~K~~~p~-~~~f~d~ 284 (396)
+..+.+..+.+|++.+|+|.++.++.|..++......+++ ..|... . ... .+.. ....+... .+. .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 3444444488999999999999999888888766443332 222211 1 110 0000 00001000 000 0
Q ss_pred CCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecCCCc
Q 016036 285 GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRL 341 (396)
Q Consensus 285 ~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~f 341 (396)
......++.|++.++++++++.+---. ..+..||..++.-+...| +..+++...
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccc
Confidence 111245678999999999998874321 234579999998886554 555666543
No 23
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.42 E-value=17 Score=36.99 Aligned_cols=160 Identities=13% Similarity=0.134 Sum_probs=85.2
Q ss_pred eEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHH
Q 016036 166 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 245 (396)
Q Consensus 166 i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~ 245 (396)
..++.+-..+. +...+.+++..+++..+..++..+ |.. |. ..++.+.+..+.+|++..|+|..+..+.|...
T Consensus 84 ~eiiVvdD~s~---d~t~~~l~~~~~~~~~v~~i~~~~---n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l 155 (420)
T PRK11204 84 YEVIAINDGSS---DNTGEILDRLAAQIPRLRVIHLAE---NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYM 155 (420)
T ss_pred eEEEEEECCCC---ccHHHHHHHHHHhCCcEEEEEcCC---CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHH
Confidence 44444443333 334455555566666665555333 322 43 33555555568899999999999999988888
Q ss_pred HHhcCCCCceEEEEeecCcccccCCCccccC----cccc-cC-----CCCCCcCCCcCCCceeeCHHHHHHHHHhccccC
Q 016036 246 LAAHRTKPRVYVGCMKSGPVLARKGVKYYEP----EYWK-FG-----EIGNKYFRHATGQLYALSKDLATYISINQHLLH 315 (396)
Q Consensus 246 L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p----~~~~-f~-----d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~ 315 (396)
++.....+++ |.+.+.+...+.. .+... ++.. ++ ......+...+|.+.++.++++..+---. +
T Consensus 156 ~~~~~~~~~v--~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~ 229 (420)
T PRK11204 156 VEHFLHNPRV--GAVTGNPRIRNRS-TLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---T 229 (420)
T ss_pred HHHHHhCCCe--EEEECCceeccch-hHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---C
Confidence 8766333332 3332222221111 11000 0000 00 00001122357888999999988763221 2
Q ss_pred CCCchhHHHHHHHhcCC--CeEecCC
Q 016036 316 KYANEDVSLGSWFIGLD--VEHVDDR 339 (396)
Q Consensus 316 ~~~~EDV~vG~~l~~L~--v~~i~~~ 339 (396)
....||+-++.-+...| +...++.
T Consensus 230 ~~~~ED~~l~~rl~~~G~~i~~~p~~ 255 (420)
T PRK11204 230 DMITEDIDISWKLQLRGWDIRYEPRA 255 (420)
T ss_pred CcccchHHHHHHHHHcCCeEEecccc
Confidence 23479999998875544 5555554
No 24
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.37 E-value=10 Score=32.09 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=52.3
Q ss_pred CCceEEEEeccceeEeHHHHHHHHHhcCCCCce-EEEEeecCcccccCCCccccCcccccCCCCCCcCCCcCCCceeeCH
Q 016036 223 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSK 301 (396)
Q Consensus 223 ~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~l-Y~G~~~~~pv~r~~~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~ 301 (396)
.+.+|++..|||..+..+.|..++......+.+ .++.. +.|++.++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~ 121 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFLLVRR 121 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeEeeeH
Confidence 389999999999999998888888754322221 11111 5788899999
Q ss_pred HHHHHHHHhccccCCCCchhHHHHHHHhcCCC
Q 016036 302 DLATYISINQHLLHKYANEDVSLGSWFIGLDV 333 (396)
Q Consensus 302 dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v 333 (396)
++++.+-.-...... ..||..+..-+...|.
T Consensus 122 ~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~ 152 (166)
T cd04186 122 EVFEEVGGFDEDFFL-YYEDVDLCLRARLAGY 152 (166)
T ss_pred HHHHHcCCCChhhhc-cccHHHHHHHHHHcCC
Confidence 988876432222222 5689888776654443
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=89.11 E-value=15 Score=33.95 Aligned_cols=191 Identities=14% Similarity=0.029 Sum_probs=90.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCC
Q 016036 127 YFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYL 206 (396)
Q Consensus 127 ~~LlI~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~ 206 (396)
+.+-|+|.+.-....-...|+.-..+.. ....+.++++...+. +.....+.+..+. .+......+
T Consensus 29 ~~isVvip~~n~~~~l~~~l~si~~q~~-------~~~~~eiivvdd~s~---d~t~~~~~~~~~~--~v~~i~~~~--- 93 (251)
T cd06439 29 PTVTIIIPAYNEEAVIEAKLENLLALDY-------PRDRLEIIVVSDGST---DGTAEIAREYADK--GVKLLRFPE--- 93 (251)
T ss_pred CEEEEEEecCCcHHHHHHHHHHHHhCcC-------CCCcEEEEEEECCCC---ccHHHHHHHHhhC--cEEEEEcCC---
Confidence 3455555554333333455655554331 112255666654443 2233333322222 233332222
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCC-CCceEEEEeec-CcccccCCCc--cccCcccc-c
Q 016036 207 ELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT-KPRVYVGCMKS-GPVLARKGVK--YYEPEYWK-F 281 (396)
Q Consensus 207 nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~-~~~lY~G~~~~-~pv~r~~~~K--~~~p~~~~-f 281 (396)
|. -|. ..+..+.+..+.+|++.+|+|+.+..+.|...+..... ...+..|.... .+........ |.....+. +
T Consensus 94 ~~-g~~-~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T cd06439 94 RR-GKA-AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRA 171 (251)
T ss_pred CC-ChH-HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHH
Confidence 22 233 23444444456799999999999998888887777642 22333443321 1100000000 10000000 0
Q ss_pred CCCCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecCCCc
Q 016036 282 GEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRL 341 (396)
Q Consensus 282 ~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~f 341 (396)
. .....+..+.|+++.+.+++.. ..-.....||..++.-+...| +...++...
T Consensus 172 ~-~~~~~~~~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~ 226 (251)
T cd06439 172 E-SRLGSTVGANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDAVA 226 (251)
T ss_pred H-HhcCCeeeecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccccEE
Confidence 0 0111233467777778877765 112223479999988886665 444444443
No 26
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=88.46 E-value=10 Score=31.61 Aligned_cols=94 Identities=11% Similarity=0.144 Sum_probs=50.3
Q ss_pred HHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCc--eEEEEeec---C-ccccc-CCCccccCccccc-CCCCC
Q 016036 215 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR--VYVGCMKS---G-PVLAR-KGVKYYEPEYWKF-GEIGN 286 (396)
Q Consensus 215 ~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~--lY~G~~~~---~-pv~r~-~~~K~~~p~~~~f-~d~~~ 286 (396)
.+.++.+..+.+|++.+|+|..+..+.|..++......+. +..|.... . ..... ...++........ +....
T Consensus 69 ~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
T cd06423 69 ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSAL 148 (180)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhee
Confidence 3455555458999999999999998888877555433332 33333321 1 11100 0001111100000 00012
Q ss_pred CcCCCcCCCceeeCHHHHHHHH
Q 016036 287 KYFRHATGQLYALSKDLATYIS 308 (396)
Q Consensus 287 ~YP~y~~G~gYvlS~dla~~I~ 308 (396)
.++..+.|.+++++++++..+-
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 149 GGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred cceeecCchHHHHHHHHHHHhC
Confidence 3445678999999999988764
No 27
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.83 E-value=19 Score=31.98 Aligned_cols=162 Identities=14% Similarity=0.050 Sum_probs=83.5
Q ss_pred ceEEEEEeccCCCCCcchHHHHHHHHhHcC-CEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHH
Q 016036 165 GIIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 243 (396)
Q Consensus 165 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~-DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~ 243 (396)
.+.+++|-..|. ++ ....+++-..+|. .+.......+. .... .+..+....+.+|++..|+|..+.++.|.
T Consensus 27 ~~eiiVvddgS~--d~-t~~~~~~~~~~~~~~~~~~~~~~~~-G~~~----~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~ 98 (214)
T cd04196 27 NDELIISDDGST--DG-TVEIIKEYIDKDPFIIILIRNGKNL-GVAR----NFESLLQAADGDYVFFCDQDDIWLPDKLE 98 (214)
T ss_pred CeEEEEEeCCCC--CC-cHHHHHHHHhcCCceEEEEeCCCCc-cHHH----HHHHHHHhCCCCEEEEECCCcccChhHHH
Confidence 466777765554 22 3333444444443 23333333322 2221 22333444589999999999999988888
Q ss_pred HHHHh-cC-CCCceEEEEee----cCcccccCC--CccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhccccC
Q 016036 244 MTLAA-HR-TKPRVYVGCMK----SGPVLARKG--VKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLH 315 (396)
Q Consensus 244 ~~L~~-~~-~~~~lY~G~~~----~~pv~r~~~--~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~ 315 (396)
.++.. .. +...++.|.+. .+....... ...+.+.... .......+..|++.++.+++++.+.......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~- 174 (214)
T cd04196 99 RLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF---NNLLFQNVVTGCTMAFNRELLELALPFPDAD- 174 (214)
T ss_pred HHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH---HHHHHhCccCCceeeEEHHHHHhhccccccc-
Confidence 88876 22 33334444332 111111000 0000000000 0111234567899999999999876543332
Q ss_pred CCCchhHHHHHHHhcCC-CeEecCC
Q 016036 316 KYANEDVSLGSWFIGLD-VEHVDDR 339 (396)
Q Consensus 316 ~~~~EDV~vG~~l~~L~-v~~i~~~ 339 (396)
...||.++...+...+ +..++..
T Consensus 175 -~~~~D~~~~~~~~~~~~~~~~~~~ 198 (214)
T cd04196 175 -VIMHDWWLALLASAFGKVVFLDEP 198 (214)
T ss_pred -cccchHHHHHHHHHcCceEEcchh
Confidence 4578888877665443 4445543
No 28
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=87.38 E-value=6.7 Score=34.52 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=73.5
Q ss_pred CceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHH
Q 016036 164 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 243 (396)
Q Consensus 164 ~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~ 243 (396)
..+.++.+-+.|. ++ ....++....++..+..++....+. |. .++..+......+|++.+|+|.....+.|.
T Consensus 28 ~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 28 YDYEIIFVDDGST--DR-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CCeEEEEEeCCCC--cc-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 3456666666554 22 2334444445566565555543321 22 333444444466999999999999988888
Q ss_pred HHHHhcCCCCceEEEEeec--CcccccCCCccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHH
Q 016036 244 MTLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISI 309 (396)
Q Consensus 244 ~~L~~~~~~~~lY~G~~~~--~pv~r~~~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~ 309 (396)
..+....+...+.+|.... .+....-..+.+......+ ....-+...|+.+++++++++.+..
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL---SGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH---cCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 8887654555666666431 1111000011110000000 1123345678889999999998764
No 29
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.22 E-value=21 Score=31.81 Aligned_cols=102 Identities=14% Similarity=0.037 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcC-CCCceEEEEeecCcccccCCCccccCcccccCCCCCCcCCC
Q 016036 213 KTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR-TKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRH 291 (396)
Q Consensus 213 l~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~-~~~~lY~G~~~~~pv~r~~~~K~~~p~~~~f~d~~~~YP~y 291 (396)
-.+++++. ..+.+|++..|+|..+..+.|..++.... +.-.++.|... .. .+
T Consensus 69 n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~--------------~~------ 121 (202)
T cd04185 69 YEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------DP--------------DG------ 121 (202)
T ss_pred HHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------cC--------------CC------
Confidence 34556665 56889999999999999888777776553 22222222110 00 01
Q ss_pred cCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCCCe-EecCCCccc
Q 016036 292 ATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE-HVDDRRLCC 343 (396)
Q Consensus 292 ~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~-~i~~~~f~~ 343 (396)
.+++.++.+++++.+--...... +..||+.++.-+...|.. ......+.+
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~~-~~~eD~~~~~r~~~~G~~i~~~~~~~~h 172 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEFF-IWGDDTEYTLRASKAGPGIYVPDAVVVH 172 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhhh-ccchHHHHHHHHHHcCCcEEecceEEEE
Confidence 33567899999887743222222 346999998877544422 444444433
No 30
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=86.36 E-value=6.4 Score=33.76 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=65.6
Q ss_pred EEeCCCCCHHHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCE-EEecccccCCchhH
Q 016036 132 GINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-LRLEHIEGYLELSA 210 (396)
Q Consensus 132 ~V~S~p~~~~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DI-l~ldf~DsY~nLt~ 210 (396)
.|.+-+...+||+.+++.-... ++.+.|+-|..... .....+......+... ...+..-+--.-.+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 4567788889999999854433 45566777665421 1111122211110000 00001111111123
Q ss_pred HHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCccccCcccccCCCCCCcCC
Q 016036 211 KTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFR 290 (396)
Q Consensus 211 Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p~~~~f~d~~~~YP~ 290 (396)
-.+..++-+++ .+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 34445555554 366888989999988776
Q ss_pred CcCCCceeeCHHHHHHHHHhccc
Q 016036 291 HATGQLYALSKDLATYISINQHL 313 (396)
Q Consensus 291 y~~G~gYvlS~dla~~I~~~~~~ 313 (396)
+..+|++|+..|+++......
T Consensus 99 --~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 --GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred --CceEEEeCHHHHHHHHHhCCC
Confidence 346899999999999987654
No 31
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=82.52 E-value=32 Score=31.48 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=64.0
Q ss_pred HHHHHHhc--CCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCccccCc-cc----ccC--CCC
Q 016036 215 YFATAVSM--WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPE-YW----KFG--EIG 285 (396)
Q Consensus 215 ~~~wa~~~--~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p~-~~----~f~--d~~ 285 (396)
++.++.+. .+.+|++..|+|+.+.++.|..++.... .+.+ |.+......++....++... .+ .|. .+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRV--GFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCe--eEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666542 3589999999999999999998887764 2322 32211000111111111100 00 000 000
Q ss_pred -CC-cCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecC
Q 016036 286 -NK-YFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDD 338 (396)
Q Consensus 286 -~~-YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~ 338 (396)
.. --.++.|.+.++++++...+---.. .+..||+-++.=+...| +...++
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcEEEEcch
Confidence 00 0124678889999999998743222 23479999987775554 444443
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=82.38 E-value=9 Score=35.01 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=77.0
Q ss_pred eEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHH
Q 016036 166 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 245 (396)
Q Consensus 166 i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~ 245 (396)
..+++|...+. +.....+ .+...+..+.... .+. .-|.. .+..+....+.+|++.+|+|+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45666665554 2233333 3345566655553 221 12332 2333334458999999999999999999888
Q ss_pred HHhcCCCCceEEEEeecCcccccC-CCcc------ccCc-------ccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhc
Q 016036 246 LAAHRTKPRVYVGCMKSGPVLARK-GVKY------YEPE-------YWKFGEIGNKYFRHATGQLYALSKDLATYISINQ 311 (396)
Q Consensus 246 L~~~~~~~~lY~G~~~~~pv~r~~-~~K~------~~p~-------~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~ 311 (396)
+.... .+.+ |.+.+....... ...| +... .... .. -...++|...++.++++..+.-..
T Consensus 99 ~~~~~-~~~v--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~G~~~~~rr~~l~~~~~~~ 171 (235)
T cd06434 99 LKPFE-DPKV--GGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY---DG-GVPCLSGRTAAYRTEILKDFLFLE 171 (235)
T ss_pred HHhcc-CCCE--eEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh---CC-CEEEccCcHHHHHHHHHhhhhhHH
Confidence 87775 3332 222110000000 0111 0000 0000 00 012356778888888887653321
Q ss_pred c-------ccCCCCchhHHHHHHHhcCCC
Q 016036 312 H-------LLHKYANEDVSLGSWFIGLDV 333 (396)
Q Consensus 312 ~-------~l~~~~~EDV~vG~~l~~L~v 333 (396)
. -.+....||..++.-+...|.
T Consensus 172 ~~~~~~~~~~~~~~~eD~~l~~~~~~~g~ 200 (235)
T cd06434 172 EFTNETFMGRRLNAGDDRFLTRYVLSHGY 200 (235)
T ss_pred HhhhhhhcCCCCCcCchHHHHHHHHHCCC
Confidence 1 123346799999887765543
No 33
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=82.02 E-value=4.2 Score=36.41 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=67.1
Q ss_pred EEEEeccceeEeHHHHHHHHHhcCCCCceEE--EEeecCcccccCCCccccCccc------ccCCCCCCcCCCcCCCcee
Q 016036 227 FYIKVDDDVHVNLATLGMTLAAHRTKPRVYV--GCMKSGPVLARKGVKYYEPEYW------KFGEIGNKYFRHATGQLYA 298 (396)
Q Consensus 227 f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~--G~~~~~pv~r~~~~K~~~p~~~------~f~d~~~~YP~y~~G~gYv 298 (396)
|++-+|+|+.+..+.|...+.... .+++-+ |.....+ ....-.++..-++. .........+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688899999999999888877665 333222 2222100 00000111111110 0000122456678999999
Q ss_pred eCHHHHHHHHHhccccCCCCchhHHHHHHHh--cCCCeEecCCCcccCCCC
Q 016036 299 LSKDLATYISINQHLLHKYANEDVSLGSWFI--GLDVEHVDDRRLCCGTPP 347 (396)
Q Consensus 299 lS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~i~~~~f~~~~~~ 347 (396)
+++++++.+.--. -..+..||..++.=+. |..+..+++....+..|+
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~ 127 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPP 127 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCCC
Confidence 9999999874222 1234569999987775 445677777755554443
No 34
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.19 E-value=12 Score=32.79 Aligned_cols=113 Identities=12% Similarity=-0.030 Sum_probs=62.9
Q ss_pred HHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcC--CCCceEEEEee--cCcccccCCCccccCcccccCCCCCCcCC
Q 016036 215 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK--SGPVLARKGVKYYEPEYWKFGEIGNKYFR 290 (396)
Q Consensus 215 ~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~--~~~~lY~G~~~--~~pv~r~~~~K~~~p~~~~f~d~~~~YP~ 290 (396)
.+..+.+..+.+|++.+|+|..+..+.+...+.... +...+..|... .+... ....+. ...... .......
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~-~~~~~~---~~~~~~~ 140 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRR-PPPFLD---KFLLYGM 140 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCC-Ccchhh---hHHhhcC
Confidence 344555545789999999999999998888873332 33445556542 11100 000010 011000 1112334
Q ss_pred CcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCCCe
Q 016036 291 HATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 334 (396)
Q Consensus 291 y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 334 (396)
+..|++.++++++.+.+-.-...+. ..||..+..-+...|..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~f~~~~~--~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 141 PICHQATFFRRSLFEKYGGFDESYR--IAADYDLLLRLLLAGKI 182 (202)
T ss_pred cccCcceEEEHHHHHHhCCCchhhC--chhhHHHHHHHHHcCCc
Confidence 5677888999999988753222222 35787776666555543
No 35
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=79.74 E-value=16 Score=31.74 Aligned_cols=132 Identities=10% Similarity=0.006 Sum_probs=70.9
Q ss_pred ceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHH
Q 016036 165 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 244 (396)
Q Consensus 165 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~ 244 (396)
...++.+-..+. +.....+.....++..+..+....... | -..+..+..+...+|++..|+|..+.++.|..
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 345555554443 234445555556666665555544432 1 13344444444559999999999999998888
Q ss_pred HHHh-cCCCCceEEEEee--cC----cccccCCCccccCcc-cccCCCCCCcCCCcCCCceeeCHHHHHHHH
Q 016036 245 TLAA-HRTKPRVYVGCMK--SG----PVLARKGVKYYEPEY-WKFGEIGNKYFRHATGQLYALSKDLATYIS 308 (396)
Q Consensus 245 ~L~~-~~~~~~lY~G~~~--~~----pv~r~~~~K~~~p~~-~~f~d~~~~YP~y~~G~gYvlS~dla~~I~ 308 (396)
++.. ......+..|... .+ +..+. ...+..... ..+ ...-.....|+.+++++++++.+-
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRR-LGSRLFNFLIRLL---LGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHH-HHHHHHHHHHHHH---cCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 3444556666642 11 11100 000000000 000 011123356777899999999985
No 36
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=79.15 E-value=47 Score=30.22 Aligned_cols=146 Identities=12% Similarity=-0.031 Sum_probs=71.7
Q ss_pred cCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHH---HhcCCCCce-EEEEeecCccccc
Q 016036 193 HGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL---AAHRTKPRV-YVGCMKSGPVLAR 268 (396)
Q Consensus 193 ~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L---~~~~~~~~l-Y~G~~~~~pv~r~ 268 (396)
...+..+....+. ....=.-.+++.+.. .+++|++..|+|+.+.++.|..++ ......+.+ .+|..........
T Consensus 46 ~~~i~~i~~~~n~-G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (237)
T cd02526 46 SEKIELIHLGENL-GIAKALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGE 123 (237)
T ss_pred CCcEEEEECCCce-ehHHhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCe
Confidence 3445444443322 123323345555543 278999999999999998888885 323233333 2233210000000
Q ss_pred CCCccccCccc---ccCC-CCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecCCCc
Q 016036 269 KGVKYYEPEYW---KFGE-IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRL 341 (396)
Q Consensus 269 ~~~K~~~p~~~---~f~d-~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~f 341 (396)
....+..+... .... ....-..++.|++.++++++...+---...+ .+..||+.++.-+...| +....+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v 201 (237)
T cd02526 124 NSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVL 201 (237)
T ss_pred eccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEE
Confidence 00000000000 0000 0011123456778899999888874332222 23468999988886555 444554444
No 37
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=77.27 E-value=14 Score=32.14 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=57.5
Q ss_pred HHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCccccCcccccCCCCCCcCCCcCCC
Q 016036 216 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQ 295 (396)
Q Consensus 216 ~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p~~~~f~d~~~~YP~y~~G~ 295 (396)
+..+.+....+|++..|+|..+..+.|...++...+ .....|... +..+. . . .....|+
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~------------~~~~~------~-~-~~~~~~~ 129 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRV------------LLNEK------L-T-ERGIRGC 129 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEeccee------------ecccc------c-c-eeEeccc
Confidence 344445557899999999999998888888876632 222223221 00000 0 0 0234577
Q ss_pred ceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC
Q 016036 296 LYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 332 (396)
Q Consensus 296 gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 332 (396)
.+++.+..+..+.--......+..||+.++.=+...|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 7788887777543333333334579999988776655
No 38
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=77.12 E-value=3.5 Score=40.23 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=39.4
Q ss_pred CCCceeeCHHHHHHHHHhcc-c---cCCCCchhHHHHHHHhcCCCeEecCCCccc
Q 016036 293 TGQLYALSKDLATYISINQH-L---LHKYANEDVSLGSWFIGLDVEHVDDRRLCC 343 (396)
Q Consensus 293 ~G~gYvlS~dla~~I~~~~~-~---l~~~~~EDV~vG~~l~~L~v~~i~~~~f~~ 343 (396)
+|+|++||..||+.|..... . .+.+.--|--|..|+..++|....+++|..
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 89999999999999998633 2 233334788999999888887777776644
No 39
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=75.22 E-value=58 Score=28.72 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=58.3
Q ss_pred HHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcC--CCCceEEEEeec---CcccccCCCccccCcccccCCCCCCcCC
Q 016036 216 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMKS---GPVLARKGVKYYEPEYWKFGEIGNKYFR 290 (396)
Q Consensus 216 ~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~--~~~~lY~G~~~~---~pv~r~~~~K~~~p~~~~f~d~~~~YP~ 290 (396)
+.++.+..+.+|++..|+|..+..+.|...++... ++..+..+.... ..... ..++.+. |. ....+..
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~-~~---~~~~~~~ 147 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPD-WS---PDLLLSQ 147 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCC-CC---HHHhhhc
Confidence 44444445789999999999999988888887652 222333332210 00000 0111111 11 0001111
Q ss_pred CcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCCCe
Q 016036 291 HATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 334 (396)
Q Consensus 291 y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 334 (396)
-+.|++-+++++++..+---... ....||.-++.-+...|.+
T Consensus 148 ~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 148 NYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred CCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 23455567888888776432221 2246998888777655543
No 40
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=73.85 E-value=77 Score=32.06 Aligned_cols=194 Identities=11% Similarity=0.012 Sum_probs=107.9
Q ss_pred eeEEEEEeCCCCCH-HHHHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccC
Q 016036 127 YFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 205 (396)
Q Consensus 127 ~~LlI~V~S~p~~~-~rR~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY 205 (396)
+.+-|+|.+--.+. --.+.++..=... -....+..|...+. +..-+.+++-..++++.+..... -
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--~ 119 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--E 119 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--c
Confidence 45556666554444 2334444333332 12356777766443 34455566666666544444422 0
Q ss_pred CchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCce-EEEEee--cCcccccCCCccccCccc---
Q 016036 206 LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK--SGPVLARKGVKYYEPEYW--- 279 (396)
Q Consensus 206 ~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~l-Y~G~~~--~~pv~r~~~~K~~~p~~~--- 279 (396)
.+- ..-...+.++....+.++++..|.|+.+..+.|.+.+......+.. +.|... .++.......+-..-++.
T Consensus 120 ~~~-~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (439)
T COG1215 120 KKN-GGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAF 198 (439)
T ss_pred ccC-ccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhH
Confidence 111 2223456677665569999999999999999999999887644433 333321 110000000110000000
Q ss_pred ----ccCCCCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecCC
Q 016036 280 ----KFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDR 339 (396)
Q Consensus 280 ----~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~ 339 (396)
... .....+..+.|+..++.+++++.+-. .....--||..++..+...| +.++++.
T Consensus 199 ~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g~---~~~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 199 YFRLRAA-SKGGLISFLSGSSSAFRRSALEEVGG---WLEDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred HHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhCC---CCCCceeccHHHHHHHHHCCCeEEEeecc
Confidence 000 12235778999999999999998872 22333469999999997554 5555554
No 41
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=72.59 E-value=87 Score=31.23 Aligned_cols=135 Identities=10% Similarity=0.038 Sum_probs=70.5
Q ss_pred CceEEEEEeccCCCCCcchHHHHHHHHhHcCC-EEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHH
Q 016036 164 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 242 (396)
Q Consensus 164 ~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~D-Il~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L 242 (396)
..+.+++|-..|. |++. ..+++-.+.+++ ++......++. |.- ++..+.+..+.+|++-+|.|.-.+++.+
T Consensus 37 ~~~EIIvVDDgS~--D~T~-~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSS--DNSA-EMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCC--CcHH-HHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 3467888877665 2332 333333334444 44444433332 111 2223333347899999999999999998
Q ss_pred HHHHHhcCCCCceEEEEeec--CcccccCCCccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHH
Q 016036 243 GMTLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISI 309 (396)
Q Consensus 243 ~~~L~~~~~~~~lY~G~~~~--~pv~r~~~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~ 309 (396)
..+++.......+..|.... .+..+.-.++.+----..+ .+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88887764333444444321 2222222222211100001 12344444433 34899999999864
No 42
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=72.42 E-value=55 Score=29.45 Aligned_cols=86 Identities=9% Similarity=0.040 Sum_probs=47.9
Q ss_pred CCceEEEEeccceeEeHHHHHHHHHh-cCCCCceEEEEee-cCccccc-CCCccccC-cccccCCC-CCCcCCCcCCCce
Q 016036 223 WDAEFYIKVDDDVHVNLATLGMTLAA-HRTKPRVYVGCMK-SGPVLAR-KGVKYYEP-EYWKFGEI-GNKYFRHATGQLY 297 (396)
Q Consensus 223 ~~a~f~lKvDDDvfVnv~~L~~~L~~-~~~~~~lY~G~~~-~~pv~r~-~~~K~~~p-~~~~f~d~-~~~YP~y~~G~gY 297 (396)
...+|++.+|+|..+.++.|..++.. ..+...+..|... ....... +....+.+ ....+... ...-.+.++|++.
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSGFR 156 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCccc
Confidence 34589999999999999988888876 3445566666532 2111100 00000000 00000000 0112345778888
Q ss_pred eeCHHHHHHHH
Q 016036 298 ALSKDLATYIS 308 (396)
Q Consensus 298 vlS~dla~~I~ 308 (396)
++++++++.+-
T Consensus 157 ~~~r~~~~~ig 167 (224)
T cd06442 157 AYRREVLEKLI 167 (224)
T ss_pred hhhHHHHHHHh
Confidence 99999999987
No 43
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=71.90 E-value=91 Score=30.18 Aligned_cols=165 Identities=12% Similarity=0.050 Sum_probs=90.8
Q ss_pred cCceEEEEEeccCCCCCcchHHHHHHHHhHcCCE-E-EecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHH
Q 016036 163 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-L-RLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 240 (396)
Q Consensus 163 ~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DI-l-~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~ 240 (396)
...+.+++|-+.+. ......|.+-.+.++-+ + ..+....+.+.+. +..-+.+....+|++..|.|+.+..+
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 45677777776654 33445666666666665 2 2222222223322 23334444589999999999999999
Q ss_pred HHHHHHH---hcCCC-CceEEEE-ee-c--C--cccccCCCcccc--CcccccCCCCCCcC-CCcCCCceeeCHHHHHHH
Q 016036 241 TLGMTLA---AHRTK-PRVYVGC-MK-S--G--PVLARKGVKYYE--PEYWKFGEIGNKYF-RHATGQLYALSKDLATYI 307 (396)
Q Consensus 241 ~L~~~L~---~~~~~-~~lY~G~-~~-~--~--pv~r~~~~K~~~--p~~~~f~d~~~~YP-~y~~G~gYvlS~dla~~I 307 (396)
.|...+. ..... ..++++. .. . + .........|.. -+.. .....+.+. ....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESF-ISGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHH-hhccccccccccccceEEEEEHHHHHHh
Confidence 9999988 33322 2333332 21 1 1 011000000100 0000 000011111 233568999999998888
Q ss_pred HHhccccCCCCchhHHHHHHHhcCCCeE
Q 016036 308 SINQHLLHKYANEDVSLGSWFIGLDVEH 335 (396)
Q Consensus 308 ~~~~~~l~~~~~EDV~vG~~l~~L~v~~ 335 (396)
----+....+..||.-++.=|...+...
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCcE
Confidence 6666666667899999998787666443
No 44
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=71.50 E-value=86 Score=29.04 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=65.9
Q ss_pred HHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCC-Cce-EEEE-eecCcccccCCCccccCcccc-cC-----CCC
Q 016036 215 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTK-PRV-YVGC-MKSGPVLARKGVKYYEPEYWK-FG-----EIG 285 (396)
Q Consensus 215 ~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~-~~l-Y~G~-~~~~pv~r~~~~K~~~p~~~~-f~-----d~~ 285 (396)
++..+.+..+.+|++.+|+|+.+.++.|...+...... +.+ ++|. +...........+.+..++.. |+ -..
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555577999999999999999998888766432 333 2222 211000000000111000000 00 001
Q ss_pred CCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecC
Q 016036 286 NKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDD 338 (396)
Q Consensus 286 ~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~ 338 (396)
...+..++|++.++++++++.+---.. ....||..++.=+...| +..++.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEecc
Confidence 123335688889999999988743222 23479999988775554 444544
No 45
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=69.69 E-value=71 Score=30.78 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=69.0
Q ss_pred CchhHHHHHHHHHHHhc-CCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCC---cc-------c
Q 016036 206 LELSAKTKTYFATAVSM-WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGV---KY-------Y 274 (396)
Q Consensus 206 ~nLt~Ktl~~~~wa~~~-~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~---K~-------~ 274 (396)
.|.-.|+-..-...... .+.+|++-.|.|+.+.++.|...+......+++ |-+.......+..+ ++ |
T Consensus 76 ~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~v--g~vq~~~~~~n~~~~~~~~~~~~~~~~ 153 (254)
T cd04191 76 ENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRA--GIIQTAPKLIGAETLFARLQQFANRLY 153 (254)
T ss_pred CCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCE--EEEeCCceeECCCCHHHHHHHHHHHHH
Confidence 34444555443333332 478999999999999999999988766433332 33321111111111 11 0
Q ss_pred cC------cccccCCCCCCcCCCcCCCceeeCHHHHHHHHHhcc-----cc-CCCCchhHHHHHHHhcCC--CeEecC
Q 016036 275 EP------EYWKFGEIGNKYFRHATGQLYALSKDLATYISINQH-----LL-HKYANEDVSLGSWFIGLD--VEHVDD 338 (396)
Q Consensus 275 ~p------~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~-----~l-~~~~~EDV~vG~~l~~L~--v~~i~~ 338 (396)
.| ..|. ..-.+|.|...++.++.+..+..... -. ...-.||..+|..+...| +...++
T Consensus 154 ~~~~~~~~~~~~------~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 154 GPVFGRGLAAWQ------GGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred HHHHHHHHHHhc------CCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 00 0011 01134679999999998877532211 11 123579999999887655 444443
No 46
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=68.43 E-value=84 Score=27.71 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=76.8
Q ss_pred eEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHH
Q 016036 166 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 245 (396)
Q Consensus 166 i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~ 245 (396)
..+++|.-.+. ++.....+++-.+.+. +..+...++ .- + -..+..+....+.+|++..|+|..+..+.|...
T Consensus 30 ~eiiivdd~ss--~d~t~~~~~~~~~~~~-i~~i~~~~n---~G-~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 30 DEVVLVKDGPV--TQSLNEVLEEFKRKLP-LKVVPLEKN---RG-L-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred cEEEEEECCCC--chhHHHHHHHHHhcCC-eEEEEcCcc---cc-H-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHH
Confidence 34555433222 2344444544445555 444433332 11 1 113444444457899999999999999888887
Q ss_pred HHhcCCCC--ceEEEEeec--CcccccCCCccccCc---c-cccCCCCCCcCCCcCCCceeeCHHHHHHHHHhccccCCC
Q 016036 246 LAAHRTKP--RVYVGCMKS--GPVLARKGVKYYEPE---Y-WKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKY 317 (396)
Q Consensus 246 L~~~~~~~--~lY~G~~~~--~pv~r~~~~K~~~p~---~-~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~ 317 (396)
+......+ .++.|.+.. ..... ...+. .|. . ..+... .- + ..|++.++.+.++..+-.-. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~--~~-~-~~~~~~~~rr~~~~~~g~~~---~~~ 172 (201)
T cd04195 102 LDFIEKNPEIDIVGGGVLEFDSDGND-IGKRR-LPTSHDDILKFARR--RS-P-FNHPTVMFRKSKVLAVGGYQ---DLP 172 (201)
T ss_pred HHHHHhCCCeEEEcccEEEECCCCCe-ecccc-CCCCHHHHHHHhcc--CC-C-CCChHHhhhHHHHHHcCCcC---CCC
Confidence 77653222 344444321 11000 00000 111 0 011000 11 1 24556677777766542211 124
Q ss_pred CchhHHHHHHHh--cCCCeEecCC
Q 016036 318 ANEDVSLGSWFI--GLDVEHVDDR 339 (396)
Q Consensus 318 ~~EDV~vG~~l~--~L~v~~i~~~ 339 (396)
..||..+...+. +..+.++++.
T Consensus 173 ~~eD~~~~~r~~~~g~~~~~~~~~ 196 (201)
T cd04195 173 LVEDYALWARMLANGARFANLPEI 196 (201)
T ss_pred CchHHHHHHHHHHcCCceecccHH
Confidence 689999988875 4445555443
No 47
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=67.29 E-value=1e+02 Score=28.20 Aligned_cols=119 Identities=15% Similarity=0.085 Sum_probs=60.4
Q ss_pred HHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCcccc-----Cccccc-----CCCC
Q 016036 216 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE-----PEYWKF-----GEIG 285 (396)
Q Consensus 216 ~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~-----p~~~~f-----~d~~ 285 (396)
+..+....+.+|++.+|.|+.+..+.|...+.... .+. +|.+.+.....++...|.. +....+ +...
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 45555555899999999999999999888554332 232 2333211111111111110 000000 0000
Q ss_pred CCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecCCC
Q 016036 286 NKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRR 340 (396)
Q Consensus 286 ~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~ 340 (396)
......+.|++-++.++++..+---.. ....||+.++.-+...| +..+++..
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~~~ 209 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDDVV 209 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEeccce
Confidence 111112356666788888777632111 23479999988886544 44454433
No 48
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=67.05 E-value=1.6e+02 Score=30.49 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=85.9
Q ss_pred ceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHH
Q 016036 165 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 244 (396)
Q Consensus 165 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~ 244 (396)
.+.++++...+. +...+.+++..+++..+....... |.. |. .+++.+....+.+|++..|.|..+..+.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH---NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 466666655443 233445555556666554443222 222 43 3456665556899999999999999999888
Q ss_pred HHHhcCCCCceEEEEeecCcccccCC---CccccCcccc-cCC--C-CCC--cCCCcCCCceeeCHHHHHHHHHhccccC
Q 016036 245 TLAAHRTKPRVYVGCMKSGPVLARKG---VKYYEPEYWK-FGE--I-GNK--YFRHATGQLYALSKDLATYISINQHLLH 315 (396)
Q Consensus 245 ~L~~~~~~~~lY~G~~~~~pv~r~~~---~K~~~p~~~~-f~d--~-~~~--YP~y~~G~gYvlS~dla~~I~~~~~~l~ 315 (396)
.+......+++ |.+.+.+..++.. .+....++.. ++- + ... -+..++|.+.++.+++++.+---..
T Consensus 176 lv~~~~~~~~~--g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~~--- 250 (444)
T PRK14583 176 LVAPLIANPRT--GAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWSP--- 250 (444)
T ss_pred HHHHHHhCCCe--EEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCCC---
Confidence 87665333332 3333222222211 1111111000 000 0 000 1123578889999999887642222
Q ss_pred CCCchhHHHHHHHhcCC--CeEecC
Q 016036 316 KYANEDVSLGSWFIGLD--VEHVDD 338 (396)
Q Consensus 316 ~~~~EDV~vG~~l~~L~--v~~i~~ 338 (396)
..-.||.-+|.-+...| +...++
T Consensus 251 ~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 251 DMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred CcccccHHHHHHHHHcCCeEEEeec
Confidence 22469999998886555 444444
No 49
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=63.98 E-value=1.3e+02 Score=28.08 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=78.9
Q ss_pred ceEEEEEeccCCCCCcchHHHHHHHHhHcCC--EEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHH
Q 016036 165 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 242 (396)
Q Consensus 165 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~D--Il~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L 242 (396)
.+.+++|-..|. + ...+.+.+-.++|++ +....... |.. |. .++..+....+.+|++.+|+|..++++.|
T Consensus 40 ~~eiivvDdgS~--D-~t~~i~~~~~~~~~~~~v~~~~~~~---n~G-~~-~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSP--D-GTQDVVKQLQKVYGEDRILLRPRPG---KLG-LG-TAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCC--C-CHHHHHHHHHHhcCCCcEEEEecCC---CCC-HH-HHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 567777776665 2 233344444445543 22222222 221 11 23344444447899999999999999888
Q ss_pred HHHHHhcC-CCCceEEEEee--cCcccccCCCcc---ccCc------ccccCCCCCCcCCCcCCCceeeCHHHHHHHHHh
Q 016036 243 GMTLAAHR-TKPRVYVGCMK--SGPVLARKGVKY---YEPE------YWKFGEIGNKYFRHATGQLYALSKDLATYISIN 310 (396)
Q Consensus 243 ~~~L~~~~-~~~~lY~G~~~--~~pv~r~~~~K~---~~p~------~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~ 310 (396)
..++.... ....+..|... .+.. .+..| ..+. .+.+ +.. -....|+..++++++++.|...
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~---~~~-~~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLL---WPG-VSDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHh---CCC-CCcCCCcccceeHHHHHHHHhh
Confidence 88876653 23456666532 1100 00001 1100 0111 111 1235778889999999998653
Q ss_pred ccccCCCCchhHHHHHHH--hcCCCeEec
Q 016036 311 QHLLHKYANEDVSLGSWF--IGLDVEHVD 337 (396)
Q Consensus 311 ~~~l~~~~~EDV~vG~~l--~~L~v~~i~ 337 (396)
... ..| .+|+-+..-+ .|..+..++
T Consensus 185 ~~~-~~~-~~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 185 VVS-KGY-VFQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred ccC-CCc-EEehHHHHHHHHcCCcEEEeC
Confidence 222 122 2344454444 344444444
No 50
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=58.78 E-value=42 Score=34.11 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCceEEEEeccceeEeHH---HHHHHHHhcCCCCceEEEE-eecCcccccCCCccc---cCcccccCCCCC
Q 016036 214 TYFATAVSMWDAEFYIKVDDDVHVNLA---TLGMTLAAHRTKPRVYVGC-MKSGPVLARKGVKYY---EPEYWKFGEIGN 286 (396)
Q Consensus 214 ~~~~wa~~~~~a~f~lKvDDDvfVnv~---~L~~~L~~~~~~~~lY~G~-~~~~pv~r~~~~K~~---~p~~~~f~d~~~ 286 (396)
.++.|+....++++++-+|||..+.++ -+...|......+++++=+ .+ +.+.+.. .|+..|+.
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N------dnG~~~~~~~~~~~lyrs---- 156 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN------DNGKEHFVDDTPSLLYRT---- 156 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec------cCCcccccCCCcceEEEe----
Confidence 467777654589999999999999998 4456666555556664322 22 1111111 13333322
Q ss_pred CcCCCcCCCceeeCHHHHHHH
Q 016036 287 KYFRHATGQLYALSKDLATYI 307 (396)
Q Consensus 287 ~YP~y~~G~gYvlS~dla~~I 307 (396)
.|+.|.|+++.+++-..+
T Consensus 157 ---~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 157 ---DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ---cCCCchHHHHHHHHHHHh
Confidence 367899999999999887
No 51
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=57.63 E-value=1.3e+02 Score=26.98 Aligned_cols=89 Identities=10% Similarity=-0.003 Sum_probs=52.5
Q ss_pred CceEEEEEeccCCCCCcchHHHHHHHHhHcCCE-EEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHH
Q 016036 164 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-LRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 242 (396)
Q Consensus 164 ~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DI-l~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L 242 (396)
..+.++.|-+.|. +.....+++..+.++.. ..+...... ... .++..+.+....+|++.+|+|..+.++.|
T Consensus 29 ~~~eiivvdd~S~---D~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSK---DGTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCC---CchHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 3466777766664 23344555555566654 223332221 111 22333333335699999999999999999
Q ss_pred HHHHHh-cCCCCceEEEEe
Q 016036 243 GMTLAA-HRTKPRVYVGCM 260 (396)
Q Consensus 243 ~~~L~~-~~~~~~lY~G~~ 260 (396)
..++.. ......+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 888886 334445677764
No 52
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=57.08 E-value=1.5e+02 Score=31.44 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=42.8
Q ss_pred HHHHHHH----hcCCceEEEEeccceeEeHHHHHHHHHhc---CCCCceEEEE-eecCcccccCCCcccc----Cccccc
Q 016036 214 TYFATAV----SMWDAEFYIKVDDDVHVNLATLGMTLAAH---RTKPRVYVGC-MKSGPVLARKGVKYYE----PEYWKF 281 (396)
Q Consensus 214 ~~~~wa~----~~~~a~f~lKvDDDvfVnv~~L~~~L~~~---~~~~~lY~G~-~~~~pv~r~~~~K~~~----p~~~~f 281 (396)
.=++||. ...+++.++-+.||.-|-++-+.-+.... ...+.+|+=. .+ |.+...++ |+..|.
T Consensus 177 ~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawN------dnG~~~~~~~~~~~~lyR 250 (434)
T PF03071_consen 177 RHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWN------DNGKEHFVDDSRPSLLYR 250 (434)
T ss_dssp HHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--------TT-BGGGS-TT-TT-EEE
T ss_pred HHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccc------cCCccccccCCCccceEe
Confidence 3445554 33578899999999999887655443332 2345666332 22 11111111 333332
Q ss_pred CCCCCCcCCCcCCCceeeCHHHHHHHHHh
Q 016036 282 GEIGNKYFRHATGQLYALSKDLATYISIN 310 (396)
Q Consensus 282 ~d~~~~YP~y~~G~gYvlS~dla~~I~~~ 310 (396)
. .|..|-|++|++++=..|...
T Consensus 251 s-------dffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 251 S-------DFFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp E-------SS---SSEEEEHHHHHHHGGG
T ss_pred c-------ccCCchHHHhhHHHHHhhccc
Confidence 1 146799999999998876554
No 53
>PHA01631 hypothetical protein
Probab=56.65 E-value=28 Score=32.01 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=53.6
Q ss_pred cCCEEEecccccCCchhHHHHHHHHHHHh---cCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccC
Q 016036 193 HGDFLRLEHIEGYLELSAKTKTYFATAVS---MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARK 269 (396)
Q Consensus 193 ~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~---~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~ 269 (396)
+.+|+...--..++ -+....++..+.+ .-+-+.++.+|.|++|+.-. .. .+.+.++.=|.. .+
T Consensus 39 ~~~Ii~~~t~~e~R--r~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A~--- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIR--WLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---LY--- 104 (176)
T ss_pred CCceEEecccchhH--HHHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeee---ee---
Confidence 44555544222222 2333444455533 35778888999999997542 11 123344544431 11
Q ss_pred CCccccCcccccCCCCCCcCCCcCCCceeeCHHHHHHHHHh
Q 016036 270 GVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISIN 310 (396)
Q Consensus 270 ~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~ 310 (396)
.| |.+.+-+||.|.-|++.+..+.++...
T Consensus 105 -~k-----------p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 -YD-----------WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred -ec-----------CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 11 234556799999999999999988764
No 54
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=55.79 E-value=2.1e+02 Score=27.96 Aligned_cols=137 Identities=13% Similarity=0.027 Sum_probs=75.1
Q ss_pred cCCEEEecccccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCce-EEEEee---cCccc--
Q 016036 193 HGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK---SGPVL-- 266 (396)
Q Consensus 193 ~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~l-Y~G~~~---~~pv~-- 266 (396)
+.++..+...++.- ...=.-.+++.|....+. |++-.++|+.+..+.|.++++.....+.. ..|... .++..
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 67777666544331 001111455666543222 99999999999999999998877544433 334321 11111
Q ss_pred -ccC-----CCcc-ccCcccccCC--CCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC
Q 016036 267 -ARK-----GVKY-YEPEYWKFGE--IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 332 (396)
Q Consensus 267 -r~~-----~~K~-~~p~~~~f~d--~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 332 (396)
+.. ...| +.+......+ +......+++|++.++++++.+.+---.+ --.+..||+-++.=+...|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 100 0011 1111100000 01112225789999999999999876322 2234799999998776555
No 55
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=55.52 E-value=80 Score=30.06 Aligned_cols=124 Identities=8% Similarity=-0.025 Sum_probs=61.2
Q ss_pred HHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCC-c-eEEEEee-c-CcccccCC---CccccCcccccCCC-CC
Q 016036 215 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-R-VYVGCMK-S-GPVLARKG---VKYYEPEYWKFGEI-GN 286 (396)
Q Consensus 215 ~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~-~-lY~G~~~-~-~pv~r~~~---~K~~~p~~~~f~d~-~~ 286 (396)
++++|.+ .+++|++..|||+.+..+.|...+......+ . ..+|... . ......+. ..+..+. ....++ ..
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQ-ISLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceee-ecccccCCc
Confidence 5666654 3789999999999999888877776543222 2 2233211 1 00000000 0010010 000000 00
Q ss_pred CcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecCCCc
Q 016036 287 KYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRL 341 (396)
Q Consensus 287 ~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~f 341 (396)
.-..++.++|.++++++++.+---.+.+ .+..||+-+..=+...| +-.+++..+
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~~i~~~~~~~~ 198 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGIPLYIDPDIVL 198 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCCEEEEeCCEEE
Confidence 1112445566789999998875422222 23468877755454333 444444333
No 56
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=45.02 E-value=87 Score=31.24 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=60.7
Q ss_pred cCceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEeccc--ccCCchhHHHHHHHHHHHhcCCceEEEEeccceeEeHH
Q 016036 163 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI--EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 240 (396)
Q Consensus 163 ~~~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~--DsY~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~ 240 (396)
..++.++|+-|.+ ..++.|..=.....-++.+++. +.+..-+.--..+..|+++..+.++++..|-|+|.-.+
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~d 110 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSD 110 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHH
Confidence 4567777877754 4677788777777888888864 34444444455677888876699999999999999999
Q ss_pred HHHHHHH
Q 016036 241 TLGMTLA 247 (396)
Q Consensus 241 ~L~~~L~ 247 (396)
+..+.|.
T Consensus 111 nF~k~l~ 117 (346)
T COG4092 111 NFAKMLS 117 (346)
T ss_pred HHHHHHH
Confidence 9999883
No 57
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=42.63 E-value=32 Score=32.38 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=60.1
Q ss_pred cCCceEEEEeccceeEeHHHHHHHHHhcCCCCce--EEEEeec-Cc----ccccCCCccccCcc-cccCCCCCCcCCCcC
Q 016036 222 MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV--YVGCMKS-GP----VLARKGVKYYEPEY-WKFGEIGNKYFRHAT 293 (396)
Q Consensus 222 ~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~l--Y~G~~~~-~p----v~r~~~~K~~~p~~-~~f~d~~~~YP~y~~ 293 (396)
..+.+|++.+|.|+.+..+.|...+......+++ ..|.+.. ++ ..+-...-|..... .......-.+...+.
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~ 150 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLP 150 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECC
Confidence 3589999999999999999988888765333433 2343321 10 00000000100000 000001123456678
Q ss_pred CCceeeCHHHHHHHHHhccc----------c-------CCCCchhHHHHHHHhcCC
Q 016036 294 GQLYALSKDLATYISINQHL----------L-------HKYANEDVSLGSWFIGLD 332 (396)
Q Consensus 294 G~gYvlS~dla~~I~~~~~~----------l-------~~~~~EDV~vG~~l~~L~ 332 (396)
|+++++.+++++.+...... + .....||..++..+...|
T Consensus 151 G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G 206 (244)
T cd04190 151 GCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAG 206 (244)
T ss_pred CceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccC
Confidence 99999999988765322111 0 012469999988875544
No 58
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.10 E-value=2.6e+02 Score=24.86 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=57.4
Q ss_pred HHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEee----c-CcccccCCCccccCcccccCCCCCCcCCC
Q 016036 217 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK----S-GPVLARKGVKYYEPEYWKFGEIGNKYFRH 291 (396)
Q Consensus 217 ~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~----~-~pv~r~~~~K~~~p~~~~f~d~~~~YP~y 291 (396)
..+....+.+|++.+|+|..+..+.|...+......+ ..+|... . +...+....++..... ....+
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~- 135 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRSR-------LFGLP- 135 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccceec-------ccCCC-
Confidence 3344444589999999999999888888766554333 3334421 1 1110000011111110 01111
Q ss_pred cCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCCC
Q 016036 292 ATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 333 (396)
Q Consensus 292 ~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v 333 (396)
.++.+.++++++...+-.-.... ..||.-++.=+...|-
T Consensus 136 ~~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~ 174 (221)
T cd02522 136 YGDQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRGR 174 (221)
T ss_pred cCCceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCC
Confidence 24567889999887764332222 6899888776665553
No 59
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=40.46 E-value=37 Score=35.17 Aligned_cols=100 Identities=9% Similarity=0.041 Sum_probs=51.8
Q ss_pred ceEEEEEeccCCCCCcchHHHHHHHHhHcCCEEEecccccC-CchhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHH
Q 016036 165 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY-LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 243 (396)
Q Consensus 165 ~i~v~FvlG~s~~~~~~~~~~I~~E~~~~~DIl~ldf~DsY-~nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~ 243 (396)
...++|++-.+++ ..-+.++.=.++|..+=--=|..+- -.+.-|.-.++-= ++.-+++|++-.|||+++.++.+.
T Consensus 114 ~~ElLfcv~s~eD---pAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpg-y~~a~ydlvlisDsgI~m~pdtil 189 (431)
T KOG2547|consen 114 KYELLFCVESSED---PAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPG-YRAAKYDLVLISDSGIFMKPDTIL 189 (431)
T ss_pred ceEEEEEEccCCC---cHHHHHHHHHhhCCCcceEEEEcccccccChhhhccCHH-HHHhcCCEEEEecCCeeecCchHH
Confidence 3456777766542 2333444445556532100022111 1222344332221 122255699999999999999999
Q ss_pred HHHHhcCCCCceEEEEeecCcccccCC
Q 016036 244 MTLAAHRTKPRVYVGCMKSGPVLARKG 270 (396)
Q Consensus 244 ~~L~~~~~~~~lY~G~~~~~pv~r~~~ 270 (396)
++-......+ =+|-+.++|-..|.+
T Consensus 190 dm~t~M~she--kmalvtq~py~~dr~ 214 (431)
T KOG2547|consen 190 DMATTMMSHE--KMALVTQTPYCKDRQ 214 (431)
T ss_pred HHHHhhhccc--ceeeecCCceeeccc
Confidence 9887654212 235555555444443
No 60
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=36.92 E-value=3.1e+02 Score=24.61 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=30.3
Q ss_pred HHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEE
Q 016036 217 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGC 259 (396)
Q Consensus 217 ~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~ 259 (396)
..+.+....+|++.+|+|..+.++.|...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 4444555789999999999999988877665543334445565
No 61
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=35.83 E-value=6.6e+02 Score=28.04 Aligned_cols=132 Identities=19% Similarity=0.122 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCce-EEEEee---c-CcccccCCCccccC-ccc-
Q 016036 207 ELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK---S-GPVLARKGVKYYEP-EYW- 279 (396)
Q Consensus 207 nLt~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~l-Y~G~~~---~-~pv~r~~~~K~~~p-~~~- 279 (396)
|...|.- .+..+.+..+.+|++..|.|..+..+.|.+.+......+++ .++... + .+..++-......| +..
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3334543 35666666788999999999999999888887665333433 122111 1 11111100000111 000
Q ss_pred ccCC--CCC--CcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecCCCcc
Q 016036 280 KFGE--IGN--KYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRLC 342 (396)
Q Consensus 280 ~f~d--~~~--~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~f~ 342 (396)
+++. ++. .-..++.|++.++.++++..+---.. ..-.||..++.-+...| +...++....
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~~ 356 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLIA 356 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEecccccc
Confidence 0000 000 01235679999999999987632111 12379999999886665 4456655443
No 62
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=34.88 E-value=3.6e+02 Score=30.23 Aligned_cols=198 Identities=13% Similarity=0.069 Sum_probs=100.0
Q ss_pred CCeeEEEEEeCCCCCHHH-HHHHHHHhccCcccchhhhccCceEEEEEeccCCCCCcch--HHHHHHHHhHcC---CEEE
Q 016036 125 RKYFMVIGINTAFSSRKR-RDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGIL--DKAIDAEEKMHG---DFLR 198 (396)
Q Consensus 125 ~~~~LlI~V~S~p~~~~r-R~aIR~TW~~~~~~~~~l~~~~~i~v~FvlG~s~~~~~~~--~~~I~~E~~~~~---DIl~ 198 (396)
..+.+.|+|.+.-...++ +..|+.+..+-.. ......+.+ |++..+.+++-.. ..++.+=.++|+ .|..
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~y 196 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFY 196 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 344566666665554443 4677777764321 001223444 8887655321100 111222233443 3333
Q ss_pred ecccccCCchhHHHHHHHHHHHh-cCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCC---cc-
Q 016036 199 LEHIEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGV---KY- 273 (396)
Q Consensus 199 ldf~DsY~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~---K~- 273 (396)
.. --.|.-.|.-..-.+... ..+++|++-.|-|+.+..+.|.+.+......++ +|-+...+...+..+ ++
T Consensus 197 r~---R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~q 271 (691)
T PRK05454 197 RR---RRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARLQ 271 (691)
T ss_pred EE---CCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHHH
Confidence 22 223444566655555443 247899999999999999999998876543343 255432222211111 10
Q ss_pred ------ccC------cccccCCCCCCcCCCcCCCceeeCHHHHHHHHHh------ccccCCCCchhHHHHHHHhcCC--C
Q 016036 274 ------YEP------EYWKFGEIGNKYFRHATGQLYALSKDLATYISIN------QHLLHKYANEDVSLGSWFIGLD--V 333 (396)
Q Consensus 274 ------~~p------~~~~f~d~~~~YP~y~~G~gYvlS~dla~~I~~~------~~~l~~~~~EDV~vG~~l~~L~--v 333 (396)
|-| ..|..+ --+..|...|+.++....+.-- ...-...--||...|..+...| |
T Consensus 272 qf~~~~y~~~~~~G~~~w~~~------~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV 345 (691)
T PRK05454 272 QFATRVYGPLFAAGLAWWQGG------EGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGV 345 (691)
T ss_pred HHHHHHHHHHHHhhhhhhccC------ccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEE
Confidence 000 001100 0012466678888876654310 0111223478999999997655 5
Q ss_pred eEecC
Q 016036 334 EHVDD 338 (396)
Q Consensus 334 ~~i~~ 338 (396)
..+++
T Consensus 346 ~~~pd 350 (691)
T PRK05454 346 WLAPD 350 (691)
T ss_pred EEcCc
Confidence 66666
No 63
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=31.42 E-value=3e+02 Score=27.50 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.1
Q ss_pred CCceEEEEeccceeEeHHHHHH
Q 016036 223 WDAEFYIKVDDDVHVNLATLGM 244 (396)
Q Consensus 223 ~~a~f~lKvDDDvfVnv~~L~~ 244 (396)
..++||+-..|||.....-+..
T Consensus 168 ~~~~YyL~LEDDVia~~~f~~~ 189 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPGFLSR 189 (297)
T ss_pred hcCCeEEEecCCeEechhHHHH
Confidence 4688999999999988654433
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=31.36 E-value=2.7e+02 Score=22.11 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=24.8
Q ss_pred HHHHHhcCCceEEEEeccceeEeHHHHHHHHHh
Q 016036 216 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAA 248 (396)
Q Consensus 216 ~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~ 248 (396)
+..+....+.+|++-+|+|..+.++.+...+..
T Consensus 69 ~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 69 RNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 344444347999999999999999888876443
No 65
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=29.36 E-value=6.6e+02 Score=26.01 Aligned_cols=124 Identities=10% Similarity=0.124 Sum_probs=65.1
Q ss_pred HHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCce--EEEEeecCc-ccccCCC--ccccCcc--------ccc
Q 016036 215 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV--YVGCMKSGP-VLARKGV--KYYEPEY--------WKF 281 (396)
Q Consensus 215 ~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~l--Y~G~~~~~p-v~r~~~~--K~~~p~~--------~~f 281 (396)
++.++.+..+.+|++..|+|..+..+.|.+.+......+.+ ..|.+...+ ....... .++..+. +..
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~ 201 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLA 201 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHh
Confidence 45666665678999999999999999998888766433433 224432211 1000000 0111110 000
Q ss_pred CC---CCCCcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHh---cCCCeEecCCCc
Q 016036 282 GE---IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFI---GLDVEHVDDRRL 341 (396)
Q Consensus 282 ~d---~~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~---~L~v~~i~~~~f 341 (396)
+. .....+..++|++.++.++++..+---. ...-.||..++.=+. +-.+....+..+
T Consensus 202 ~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~ 264 (439)
T TIGR03111 202 GRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRELLDGKVYLCENAIF 264 (439)
T ss_pred hhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHHhcCCeEEECCCCEE
Confidence 00 0001122367888888888877653211 112389999986553 223444444433
No 66
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=28.07 E-value=70 Score=30.89 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=53.5
Q ss_pred CCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCccccCcccccCCCCCCcCCCcCCCceeeCHH
Q 016036 223 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKD 302 (396)
Q Consensus 223 ~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p~~~~f~d~~~~YP~y~~G~gYvlS~d 302 (396)
...+-|+-+|||+.++.+.|.......+..|.-.+|..-..-.....+++|-....| .+.| .-...++-++.+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~-----~~~y-SmvLt~aaf~h~~ 147 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEW-----SNEY-SMVLTGAAFYHRY 147 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SS-----S--B-SEE-TTEEEEETH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCC-----CCcc-hhhhhhhHhhcch
Confidence 467889999999999999999888887766766778753111111123344221111 2233 2234555566666
Q ss_pred HHHHHHHhcc-----cc-CCCCchhHHHHHHHh
Q 016036 303 LATYISINQH-----LL-HKYANEDVSLGSWFI 329 (396)
Q Consensus 303 la~~I~~~~~-----~l-~~~~~EDV~vG~~l~ 329 (396)
.........+ .+ ....=||+.+-....
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6554433111 11 123569999887764
No 67
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=27.56 E-value=4.2e+02 Score=23.13 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=52.2
Q ss_pred HHHHHHHh-cCCceEEEEeccceeEeHHHHHHHHHhcCCCCceEEEEeecCcccccCCCccccC----cc----c--ccC
Q 016036 214 TYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP----EY----W--KFG 282 (396)
Q Consensus 214 ~~~~wa~~-~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~lY~G~~~~~pv~r~~~~K~~~p----~~----~--~f~ 282 (396)
.+++++.. -.+.+|++.+|.|+.+.++.|..++........+..|+..... +...|.-. .+ + ..+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN----PDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC----CccCHHHHHHHHHHHHHHHHHHHH
Confidence 34555431 2468999999999999998888888776554556666653111 11112100 00 0 000
Q ss_pred CCCCCcCCCcCCCceeeCHHHHHH
Q 016036 283 EIGNKYFRHATGQLYALSKDLATY 306 (396)
Q Consensus 283 d~~~~YP~y~~G~gYvlS~dla~~ 306 (396)
...-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000122345789999999999887
No 68
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=25.03 E-value=3.4e+02 Score=21.25 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=29.9
Q ss_pred cCCEEEecccccCCchhHHHHHHHHHHHh-cCCceEEEEeccceeEeHHH
Q 016036 193 HGDFLRLEHIEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLAT 241 (396)
Q Consensus 193 ~~DIl~ldf~DsY~nLt~Ktl~~~~wa~~-~~~a~f~lKvDDDvfVnv~~ 241 (396)
+.++-...+...|..-... ....+.+.+ ..+++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 3555555566666543333 223333333 35899999999999988765
No 69
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=24.85 E-value=4e+02 Score=26.36 Aligned_cols=96 Identities=17% Similarity=0.072 Sum_probs=57.7
Q ss_pred cCceEEEEEeccCCCCCcchHHHHHHHH----------hHcCCEEEe--cccccC-------Cc-----hhHHHHHHH-H
Q 016036 163 AKGIIIRFVIGHSATSGGILDKAIDAEE----------KMHGDFLRL--EHIEGY-------LE-----LSAKTKTYF-A 217 (396)
Q Consensus 163 ~~~i~v~FvlG~s~~~~~~~~~~I~~E~----------~~~~DIl~l--df~DsY-------~n-----Lt~Ktl~~~-~ 217 (396)
...|.+-|+++.+.. ++...+.|+.+. ..|+-|.++ ||.+.- ++ .-.+.++-- .
T Consensus 54 ~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 457889999999873 344444555443 335555444 554321 11 112222211 1
Q ss_pred HHHh---cCCceEEEEeccceeEeHHHHHHHHHhcCC---CCceEEEE
Q 016036 218 TAVS---MWDAEFYIKVDDDVHVNLATLGMTLAAHRT---KPRVYVGC 259 (396)
Q Consensus 218 wa~~---~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~---~~~lY~G~ 259 (396)
|+.. .|..+|++-.|-|+.-.++.|++.|-.+.. -|++|.+.
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kdIivPn~~~~~ 180 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHDKDIIVPNCWRRY 180 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCCCCEEccceeecc
Confidence 3321 369999999999999999999999987652 24455443
No 70
>PRK10018 putative glycosyl transferase; Provisional
Probab=24.79 E-value=6.5e+02 Score=24.48 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=25.7
Q ss_pred HHHHhcCCceEEEEeccceeEeHHHHHHHHHhc
Q 016036 217 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH 249 (396)
Q Consensus 217 ~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~ 249 (396)
..+......+|++..|+|..+.++.|..++...
T Consensus 78 N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 78 NQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 344444578999999999999998888777654
No 71
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=21.58 E-value=1.3e+03 Score=26.72 Aligned_cols=126 Identities=17% Similarity=0.054 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCceEEEEeccceeEeHHHHHHHHHhcCCCCce-EEEEee----cCcccccCCCccccC-cc-cccC
Q 016036 210 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK----SGPVLARKGVKYYEP-EY-WKFG 282 (396)
Q Consensus 210 ~Ktl~~~~wa~~~~~a~f~lKvDDDvfVnv~~L~~~L~~~~~~~~l-Y~G~~~----~~pv~r~~~~K~~~p-~~-~~f~ 282 (396)
.|.- .+..+.+..+.+|++..|.|..+..+-|...+......+++ .++... ..|..++-+.--..| +. .+++
T Consensus 326 gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~ 404 (852)
T PRK11498 326 AKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYG 404 (852)
T ss_pred chHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHH
Confidence 3443 45666666789999999999999998888776543222332 122110 111111100000011 10 0000
Q ss_pred --CCCC--CcCCCcCCCceeeCHHHHHHHHHhccccCCCCchhHHHHHHHhcCC--CeEecCC
Q 016036 283 --EIGN--KYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDR 339 (396)
Q Consensus 283 --d~~~--~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~ 339 (396)
.++. .--.++.|++.++.+++++.+---... ...||.-++.-+...| +.+++++
T Consensus 405 ~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~---titED~dlslRL~~~Gyrv~yl~~~ 464 (852)
T PRK11498 405 LVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE---TVTEDAHTSLRLHRRGYTSAYMRIP 464 (852)
T ss_pred HHHhHHHhhcccccccceeeeEHHHHHHhcCCCCC---ccCccHHHHHHHHHcCCEEEEEecc
Confidence 0000 011357899999999999988432222 2369999999997766 4445444
No 72
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=20.99 E-value=86 Score=20.53 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHhhHhhhccc
Q 016036 16 IPRKWALFLCACSFCAGMSFTNR 38 (396)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~ 38 (396)
++--|+.++.+|+|-..+.|=||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45669999999999999998887
No 73
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=20.89 E-value=85 Score=24.01 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhHhhhc
Q 016036 21 ALFLCACSFCAGMSFT 36 (396)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (396)
++++|++|+.+|.+++
T Consensus 42 ~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 42 VVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3588999999998876
Done!