Query 016038
Match_columns 396
No_of_seqs 140 out of 233
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:13:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07063 DUF1338: Domain of un 100.0 4.3E-90 9.3E-95 675.9 21.6 275 102-387 2-302 (302)
2 COG5383 Uncharacterized protei 99.0 2.3E-10 5E-15 111.4 4.4 86 97-184 6-110 (295)
3 cd07250 HPPD_C_like C-terminal 97.9 0.00032 6.9E-09 64.7 14.2 155 136-386 4-189 (191)
4 TIGR01263 4HPPD 4-hydroxypheny 97.0 0.0035 7.5E-08 62.9 9.3 99 260-393 225-350 (353)
5 PF13669 Glyoxalase_4: Glyoxal 96.0 0.013 2.8E-07 48.4 5.3 95 137-307 1-96 (109)
6 PLN02875 4-hydroxyphenylpyruva 93.4 0.4 8.6E-06 50.1 9.0 112 259-391 248-395 (398)
7 COG3185 4-hydroxyphenylpyruvat 92.5 0.35 7.6E-06 49.8 7.0 90 268-393 241-356 (363)
8 KOG0638 4-hydroxyphenylpyruvat 90.6 2.5 5.4E-05 43.5 10.6 211 114-393 97-377 (381)
9 cd07249 MMCE Methylmalonyl-CoA 87.9 5.4 0.00012 32.2 9.1 32 268-306 68-99 (128)
10 cd07257 THT_oxygenase_C The C- 86.3 4.3 9.3E-05 35.6 8.2 42 136-182 2-45 (153)
11 TIGR03081 metmalonyl_epim meth 86.0 9.7 0.00021 30.9 9.7 42 136-182 2-44 (128)
12 cd08353 Glo_EDI_BRP_like_7 Thi 85.0 6.3 0.00014 33.2 8.3 32 136-172 4-35 (142)
13 PLN02367 lactoylglutathione ly 83.3 4.3 9.4E-05 39.7 7.4 46 133-183 73-119 (233)
14 cd07233 Glyoxalase_I Glyoxalas 79.5 21 0.00046 28.6 9.2 44 136-184 1-45 (121)
15 PLN03042 Lactoylglutathione ly 64.9 25 0.00055 32.8 7.2 45 134-183 26-71 (185)
16 cd07237 BphC1-RGP6_C_like C-te 64.0 68 0.0015 28.1 9.4 31 133-168 7-38 (154)
17 CHL00193 ycf35 Ycf35; Provisio 61.1 8.4 0.00018 34.4 3.1 39 274-316 2-40 (128)
18 PRK10291 glyoxalase I; Provisi 39.2 28 0.0006 29.0 2.7 30 270-306 63-92 (129)
19 cd08342 HPPD_N_like N-terminal 38.4 33 0.00072 29.1 3.1 33 268-307 65-97 (136)
20 PRK11478 putative lyase; Provi 36.5 31 0.00067 28.2 2.5 27 136-167 7-34 (129)
21 COG5646 Uncharacterized conser 36.1 40 0.00087 30.4 3.3 82 212-316 12-95 (126)
22 PLN03042 Lactoylglutathione ly 36.0 22 0.00049 33.2 1.8 37 264-307 19-56 (185)
23 PF10097 DUF2335: Predicted me 35.6 20 0.00042 27.2 1.1 24 371-394 9-32 (50)
24 PRK06724 hypothetical protein; 35.0 85 0.0018 27.0 5.1 49 136-186 64-115 (128)
25 cd08352 Glo_EDI_BRP_like_1 Thi 34.9 36 0.00079 27.0 2.7 29 271-306 71-99 (125)
26 cd08360 MhqB_like_C C-terminal 32.5 1.1E+02 0.0023 25.8 5.3 28 136-168 4-32 (134)
27 cd08353 Glo_EDI_BRP_like_7 Thi 32.5 1E+02 0.0023 25.7 5.2 45 136-186 88-133 (142)
28 TIGR01263 4HPPD 4-hydroxypheny 31.8 46 0.00099 33.6 3.3 40 260-306 60-99 (353)
29 PF11080 DUF2622: Protein of u 31.6 38 0.00083 29.2 2.3 31 273-303 6-36 (96)
30 cd07245 Glo_EDI_BRP_like_9 Thi 31.0 49 0.0011 25.4 2.8 29 271-306 63-91 (114)
31 PF11615 DUF3249: Protein of u 29.5 10 0.00022 29.2 -1.3 23 349-375 29-51 (60)
32 PF08187 Tetradecapep: Myoacti 25.5 35 0.00075 19.7 0.7 10 373-382 1-10 (14)
33 cd07241 Glo_EDI_BRP_like_3 Thi 25.0 1.5E+02 0.0032 23.6 4.7 41 136-181 2-43 (125)
34 cd07258 PpCmtC_C C-terminal do 24.5 1.2E+02 0.0026 26.4 4.3 31 271-305 55-85 (141)
35 TIGR03645 glyox_marine lactoyl 22.7 76 0.0016 28.1 2.7 28 270-304 91-118 (162)
36 cd08344 MhqB_like_N N-terminal 22.4 92 0.002 25.1 3.0 27 136-167 3-29 (112)
37 TIGR00068 glyox_I lactoylgluta 22.2 81 0.0017 27.2 2.7 37 132-173 14-51 (150)
38 PRK11700 hypothetical protein; 21.5 1.2E+02 0.0026 29.2 3.8 44 120-165 22-67 (187)
39 PF00903 Glyoxalase: Glyoxalas 21.2 1.5E+02 0.0032 23.4 3.9 28 273-307 2-30 (128)
40 cd07241 Glo_EDI_BRP_like_3 Thi 21.1 1.8E+02 0.0039 23.1 4.5 48 136-185 71-118 (125)
41 PF14822 Vasohibin: Vasohibin 20.9 1.8E+02 0.0039 29.1 5.0 75 102-177 15-92 (246)
42 cd07243 2_3_CTD_C C-terminal d 20.6 93 0.002 26.9 2.8 28 136-168 7-35 (143)
43 cd08364 FosX FosX, a fosfomyci 20.5 1.7E+02 0.0036 24.6 4.3 48 136-186 67-114 (131)
44 PLN02367 lactoylglutathione ly 20.2 91 0.002 30.7 2.9 35 265-306 68-103 (233)
45 PF14907 NTP_transf_5: Unchara 20.0 1.9E+02 0.0041 26.9 4.9 69 99-168 40-123 (249)
No 1
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=100.00 E-value=4.3e-90 Score=675.85 Aligned_cols=275 Identities=42% Similarity=0.685 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHhhCCCccccceEEEeecCCCCCcHHHHHHHHHhcCCeeccccccccCCceeEee
Q 016038 102 RTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWF 181 (396)
Q Consensus 102 r~~f~~Lw~~Y~~rvP~a~~i~~lv~~~~g~~i~nDH~AfRT~g~~~~Gi~~lariF~~LGY~~~G~Y~Fp~KkL~At~f 181 (396)
++++++||++|+++||+|++|+++|.+ .|++|+||||||||||.++.||++|+++|++|||+++|+|+|+.|||+|+||
T Consensus 2 ~~~~~~L~~~Y~~~vP~~~~~~~lv~~-~~~~v~~dH~A~RT~~~~~~gl~~lar~F~~lGy~~~G~Y~f~~kkl~a~~f 80 (302)
T PF07063_consen 2 QAFFDALWEMYLQRVPSAGTLVELVAE-VGETVLNDHGAFRTFGGPPYGLASLARIFAALGYEPVGYYDFPAKKLHATWF 80 (302)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHH-TTCHCHEEEEEEEEECTSHCCHHHHHHHHHTTTEEEEEEEEEGGGTEEEEEE
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHH-cCccceeeeeEEEecCCCchhHHHHHHHHHHcCCEEcceecccccCceEEEe
Confidence 478899999999999999999999998 7999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCeEEeeccccCCCCHHHHHHHHHHhhhcCCC--------------------chHHHHHHHhc
Q 016038 182 SPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSG--------------------KKHAALASALG 241 (396)
Q Consensus 182 ~ppd~~~~~~~~~~~~~~PRIFISEL~ve~lS~e~Q~iI~~~v~~~~~~--------------------~~~~~~~~~l~ 241 (396)
+|||++.+ .||||||||+||+||+++|++|+++|.++..- +..+++..+++
T Consensus 81 ~p~d~~~~---------~prvFiSeL~~e~ls~~~q~~i~~~l~~r~~~~~~~~~~l~~~~~~~~l~~~~a~~~v~~~~~ 151 (302)
T PF07063_consen 81 RPPDPPEL---------APRVFISELRVEELSPELQEIIEKYLSRRDPFSPRPLELLDQAERQGGLSAEQADEFVAEALS 151 (302)
T ss_dssp EETSCTCC---------C-EEEEEEE-GGGSSHHHHHHHHHHHTTS-GCGHHHHHHHHHHHHHSCEBHHHHHHHHHHHGG
T ss_pred cCCCCccc---------CCeEEeecccHhhcCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 99998643 39999999999999999999999999554321 11235567899
Q ss_pred CCCCCC--CCHHHHHHHHHhhhhhHHHhhhCCCCcccceecccccccCCCHHHHHHHHHHcCCccccCCCeeEeCCCcce
Q 016038 242 SLTWGK--PLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLL 319 (396)
Q Consensus 242 ~~~W~~--Ps~adYe~L~~ESeyAAWia~~Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~~GG~IkgSP~glL 319 (396)
+|+|+. |+++||++|++||||||||+++||++||||++||+|+. +.||++||++|+++|++||++||+|||||+++|
T Consensus 152 ~~~W~~~~ps~~~Y~~L~~eSe~aAWi~~~G~~~NH~T~~v~~l~~-~~dI~~v~~~l~~~G~~~n~~g~~Iegsp~~lL 230 (302)
T PF07063_consen 152 GFPWQHRAPSLADYQTLLAESEYAAWIAAHGYHINHFTPRVNRLKK-FLDIDAVNAFLKERGIPMNDSGGEIEGSPDGLL 230 (302)
T ss_dssp GCSS-SB-SBHHHHHHHHHH-HHHHHHHHHTCS-SEEEEETTT-TT--S-HHHHHHHHHHTT--B--TTSSSEECCCCSE
T ss_pred ccCCCCCCCCHHHHHHHHHHhHHHHhhcccccccceeeceeecccc-cccHHHHHHHHHHcCCCccccCCceEECCCCCE
Confidence 999998 99999999999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred EEeeccccceeEEecCC----cEeeeccceEEeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhc
Q 016038 320 LQSSTVADSFPFCFSDG----VTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS 387 (396)
Q Consensus 320 rQSST~Ad~~~v~FaDG----~~~~IPgsfyEFaeR~~lp~~~~l~~~el~~~~~~~GF~a~NAdkIFEST~ 387 (396)
|||||+|++++|+|.|| +++.||||||||+||+|+|++.++++.+..+.++|+||+++|||||||||+
T Consensus 231 rQtS~~A~~~~v~F~d~~g~~~~~~ip~~f~Ef~~R~~~~~~~~~~~~~~~~~~~yegF~~~sA~~IFeSt~ 302 (302)
T PF07063_consen 231 RQTSTMADEEEVTFADGDGSLVEGSIPGSFYEFAQRYPLPEGLILPGDEIAEPILYEGFLPGSADGIFESTL 302 (302)
T ss_dssp EEEEBEEEEEEEEETTETS-ECEEEEEEEEEEEEEE-CTTCCHHHTTSEEEEESB--SSS------------
T ss_pred EEEeeccceeEEEEecCCCceeeeEeeeeEEeehhhccCcccccCccccccCCcccCCCChhhhhhhhccCC
Confidence 99999999999999998 677899999999999999999888899999999999999999999999995
No 2
>COG5383 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.01 E-value=2.3e-10 Score=111.43 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=74.6
Q ss_pred ChHHHHHHHHH-HHHHHHhhCCCHHHHHHHHHhhCCCcc----------------ccceEEEeecCCCCCcHHHHHHHHH
Q 016038 97 GESFFRTVLQS-MEAVYLNRNPTAKAVLELVQSSGNNQI----------------CYDHIAFRTFGVNGHGIDSIASFFM 159 (396)
Q Consensus 97 ~~~~lr~~f~~-Lw~~Y~~rvP~a~~i~~lv~~~~g~~i----------------~nDH~AfRT~g~~~~Gi~~lariF~ 159 (396)
+-..+|+-|++ |..||.++||.+++++++|.+++...+ .++||||| +| ++.++..+.|+|.
T Consensus 6 ~~d~ir~~fs~ams~my~~evp~ygtl~elva~vn~~~l~~~~~~~~~~~l~r~~~erhgair-vg-t~~el~~~rr~fa 83 (295)
T COG5383 6 SPDEIRAAFSAAMSAMYQEEVPAYGTLLELVADVNSDVLTRHRRLERTDSLERLTEERHGAIR-VG-TAAELSMLRRLFA 83 (295)
T ss_pred CHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhHHHHHHHHHHHhcchHHHhhHHhcCcee-cC-CHHHHHHHHHHHH
Confidence 34568988888 889999999999999999998643322 28999999 78 8999999999999
Q ss_pred hcCCeeccccccccCC--ceeEeecCC
Q 016038 160 DYGYTKQDELRFPAKK--LKAFWFSPP 184 (396)
Q Consensus 160 ~LGY~~~G~Y~Fp~Kk--L~At~f~pp 184 (396)
.|||.|+|||++...+ ++.|.|++.
T Consensus 84 ~mgm~pv~yydl~~agvpvhstafe~~ 110 (295)
T COG5383 84 VMGMYPVGYYDLSTAGVPVHSTAFEPV 110 (295)
T ss_pred HhcCCcccceeccccCCcceechhhhh
Confidence 9999999999999887 889988754
No 3
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=97.91 E-value=0.00032 Score=64.74 Aligned_cols=155 Identities=21% Similarity=0.284 Sum_probs=99.1
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHh-cCCeecccccccc--CCceeEeecCCCCCCCCCCCCCCCCCCeEEeeccccCCC
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMD-YGYTKQDELRFPA--KKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQM 212 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~-LGY~~~G~Y~Fp~--KkL~At~f~ppd~~~~~~~~~~~~~~PRIFISEL~ve~l 212 (396)
.||+++.. +.-.++.-..++.. ||+++....+.+. ..+....+..|+. .-+|-+.|-...
T Consensus 4 iDHv~i~V---~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g------------~i~l~L~~~~~~-- 66 (191)
T cd07250 4 IDHVVGNV---PDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDG------------KIRIPLNEPASG-- 66 (191)
T ss_pred eeEEEeec---ChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCC------------cEEEEEecCCCC--
Confidence 69999884 33458888888855 9999988755544 2355555554432 234433321100
Q ss_pred CHHHHHHHHHHhhhcCCCchHHHHHHHhcCCCCCCCCHHHHHHHHHhhhhhHHHhhh-CCCCcccceecccccccCCCHH
Q 016038 213 SPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIK 291 (396)
Q Consensus 213 S~e~Q~iI~~~v~~~~~~~~~~~~~~~l~~~~W~~Ps~adYe~L~~ESeyAAWia~~-Gy~~NHfTvsVn~L~~r~~DIe 291 (396)
..-|++..++..+ |..+.|+++ .++||+
T Consensus 67 --------------------------------------------~~~s~~~~fl~~~~G~Gv~HIAf-------~vdDI~ 95 (191)
T cd07250 67 --------------------------------------------KRKSQIQEFLEYYGGAGVQHIAL-------ATDDIF 95 (191)
T ss_pred --------------------------------------------CCccHHHHHHHHhCCCceeEEEE-------ECCCHH
Confidence 0113344455554 667999998 567999
Q ss_pred HHHHHHHHcCCccccC-----------CC----------------eeEeCCCcceEEeeccccceeEEecCCcEeeeccc
Q 016038 292 SLNQFIEDNGFRLNSE-----------GG----------------VLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCS 344 (396)
Q Consensus 292 ~vn~~Lk~~G~~ln~~-----------GG----------------~IkgSP~glLrQSST~Ad~~~v~FaDG~~~~IPgs 344 (396)
+..+.|+++|+++... -+ .+-....+.|.|.-|... .| =|.=
T Consensus 96 ~~~~~L~~~Gv~~l~~P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~d~~~~~~llq~ft~~~------~~-----~~~~ 164 (191)
T cd07250 96 ATVAALRARGVEFLPIPDNYYDDLEARLDGILVDEDLDTLRELGILVDRDDGGYLLQIFTKPV------FD-----RPTF 164 (191)
T ss_pred HHHHHHHHcCCeeccCchhhHHHHHHhccccccchhHHHHHHCCEEEECCCCCEEEEEeccCC------CC-----CCCe
Confidence 9999999999876431 01 011123467777777421 11 1667
Q ss_pred eEEeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhh
Q 016038 345 YIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFEST 386 (396)
Q Consensus 345 fyEFaeR~~lp~~~~l~~~el~~~~~~~GF~a~NAdkIFEST 386 (396)
|+|++||. + +.||-+||+...||+-
T Consensus 165 f~E~iqR~----g-------------~~gfg~~N~~~l~~a~ 189 (191)
T cd07250 165 FFEIIQRR----G-------------YTGFGAGNFKALFEAI 189 (191)
T ss_pred EEEEEEEc----C-------------CCccccchHHHHHHHh
Confidence 99999997 3 7999999999999973
No 4
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=96.99 E-value=0.0035 Score=62.86 Aligned_cols=99 Identities=25% Similarity=0.369 Sum_probs=72.1
Q ss_pred hhhhHHHhhh-CCCCcccceecccccccCCCHHHHHHHHHHcCCccccCC-----------C--------------e-eE
Q 016038 260 SEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEG-----------G--------------V-LK 312 (396)
Q Consensus 260 SeyAAWia~~-Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~~G-----------G--------------~-Ik 312 (396)
|+...++..+ |-.+.|+++ ++.||++..+.|+++|+++.+.- + + +-
T Consensus 225 s~i~~fl~~~~g~Gv~HiAf-------~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D 297 (353)
T TIGR01263 225 SQIEEFLEFYNGAGVQHIAL-------NTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILID 297 (353)
T ss_pred CHHHHHHHHcCCCCccEEEE-------EcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEe
Confidence 4444556565 778999998 67899999999999999765420 0 1 22
Q ss_pred eCCCcceEEeeccccceeEEecCCcEeeeccceEEeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhchhhhh
Q 016038 313 VSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLT 392 (396)
Q Consensus 313 gSP~glLrQSST~Ad~~~v~FaDG~~~~IPgsfyEFaeR~~lp~~~~l~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~ 392 (396)
...+|.|.|.-|... .| -|.=|+|++||. + ++||-+||=..+||+--..|+.
T Consensus 298 ~d~~g~llqift~~~------~~-----~~~~FfEiiqR~----~-------------~~gfG~gN~~alf~a~e~~q~~ 349 (353)
T TIGR01263 298 GDEDGYLLQIFTKPL------QD-----RGTLFFEIIQRK----G-------------AGGFGEGNFKALFEAIEREQER 349 (353)
T ss_pred cCCCceEEEEeccCC------CC-----CCCeEEEEEEEc----C-------------CCccchhhHHHHHHHHHHHHHH
Confidence 344577777777311 11 156699999997 2 7999999999999999887776
Q ss_pred h
Q 016038 393 R 393 (396)
Q Consensus 393 ~ 393 (396)
|
T Consensus 350 r 350 (353)
T TIGR01263 350 R 350 (353)
T ss_pred h
Confidence 5
No 5
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.03 E-value=0.013 Score=48.45 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=68.5
Q ss_pred ceEEEeecCCCCCcHHHHHHHHHh-cCCeeccccccccCCceeEeecCCCCCCCCCCCCCCCCCCeEEeeccccCCCCHH
Q 016038 137 DHIAFRTFGVNGHGIDSIASFFMD-YGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQ 215 (396)
Q Consensus 137 DH~AfRT~g~~~~Gi~~lariF~~-LGY~~~G~Y~Fp~KkL~At~f~ppd~~~~~~~~~~~~~~PRIFISEL~ve~lS~e 215 (396)
||++|.+=+ +++-.+.|.. ||+++...+..+..+++..++.-++. . +.|-.+.+..
T Consensus 1 dHv~i~V~D-----l~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~------------~--~~iELi~p~~---- 57 (109)
T PF13669_consen 1 DHVGIVVPD-----LDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG------------P--VQIELIQPLD---- 57 (109)
T ss_dssp EEEEEEES------HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE------------T--EEEEEEEESS----
T ss_pred CEEEEEcCC-----HHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC------------c--EEEEEEEeCC----
Confidence 799999865 9999999998 99999999888888777666654432 1 3332222221
Q ss_pred HHHHHHHHhhhcCCCchHHHHHHHhcCCCCCCCCHHHHHHHHHhhhhhHHHhhhCCCCcccceecccccccCCCHHHHHH
Q 016038 216 IQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQ 295 (396)
Q Consensus 216 ~Q~iI~~~v~~~~~~~~~~~~~~~l~~~~W~~Ps~adYe~L~~ESeyAAWia~~Gy~~NHfTvsVn~L~~r~~DIe~vn~ 295 (396)
++ .|+...|..+||+++ +++||++..+
T Consensus 58 --------------------------------~~--------------~~~~~~~~gi~Hia~-------~v~D~d~~~~ 84 (109)
T PF13669_consen 58 --------------------------------GD--------------SPLDRGGGGIHHIAF-------EVDDLDAAIA 84 (109)
T ss_dssp --------------------------------TT--------------CHHHHTSSEEEEEEE-------EESHHHHHHH
T ss_pred --------------------------------CC--------------cccccCCCCEEEEEE-------EeCCHHHHHH
Confidence 00 122227888999998 4679999999
Q ss_pred HHHHcCCccccC
Q 016038 296 FIEDNGFRLNSE 307 (396)
Q Consensus 296 ~Lk~~G~~ln~~ 307 (396)
.|+++|+++..+
T Consensus 85 ~l~~~G~~~~~~ 96 (109)
T PF13669_consen 85 RLEAQGFRVLDE 96 (109)
T ss_dssp HHHHTTECEEEC
T ss_pred HHHHCCCEEccc
Confidence 999999998765
No 6
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=93.36 E-value=0.4 Score=50.07 Aligned_cols=112 Identities=21% Similarity=0.339 Sum_probs=72.0
Q ss_pred hhhhhHHHhhh-CCCCcccceecccccccCCCHHHHHHHHHHc----CCccccC-------------C------------
Q 016038 259 ESEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDN----GFRLNSE-------------G------------ 308 (396)
Q Consensus 259 ESeyAAWia~~-Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~----G~~ln~~-------------G------------ 308 (396)
.|+.+-++..+ |-.+.|.++ +++||.+.-+.|+++ |+++-+- +
T Consensus 248 ~SqI~eFL~~~~G~GIQHIAl-------~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~ 320 (398)
T PLN02875 248 KSQIQTYLEHNEGPGLQHLAL-------KSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECE 320 (398)
T ss_pred cChHHHHHHhcCCCCeeEEEe-------ecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHH
Confidence 58888888888 578999998 678999999999998 9866431 0
Q ss_pred --Ce-eEeCCCcceEEeeccccceeEEecCCcEeeeccceEEeeeecc--CCCCCCCChhhhhhhccccCcCCCChhHHH
Q 016038 309 --GV-LKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLV--LPQYKNLPEAEVKEFHRRDGFEVGNADKIF 383 (396)
Q Consensus 309 --G~-IkgSP~glLrQSST~Ad~~~v~FaDG~~~~IPgsfyEFaeR~~--lp~~~~l~~~el~~~~~~~GF~a~NAdkIF 383 (396)
|+ |-...+|.|.|.-|... .| =|-=|+|||||.- ..+....+.++ .+-.+||=.||=..+|
T Consensus 321 ~~~ILvD~d~~G~LLQIFTkp~------~~-----rpt~FfEiIQR~g~~~~~~~~~~~~~---~~g~~GFG~GNfkALF 386 (398)
T PLN02875 321 ELGILVDKDDQGVLLQIFTKPV------GD-----RPTLFLEIIQRIGCMEKDEEGKEYEQ---AGGCGGFGKGNFSELF 386 (398)
T ss_pred HcCEEEecCCCceEEEEecccc------CC-----CCceEEEEEEecCccccccccccccc---cccCCCcCcccHHHHH
Confidence 00 11222345555555211 11 1346999999973 11111111122 2337999999999999
Q ss_pred Hhhchh-hh
Q 016038 384 ESTSKE-QL 391 (396)
Q Consensus 384 EST~~~-~~ 391 (396)
||--.. |+
T Consensus 387 eaiE~~~q~ 395 (398)
T PLN02875 387 KSIEEYEKT 395 (398)
T ss_pred HHHHHHHHh
Confidence 997766 44
No 7
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=92.52 E-value=0.35 Score=49.81 Aligned_cols=90 Identities=24% Similarity=0.349 Sum_probs=63.0
Q ss_pred hhCCCCcccceecccccccCCCHHHHHHHHHHcCCccccC--------CCeeEe-----------------CCCc-ceEE
Q 016038 268 VNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE--------GGVLKV-----------------SPDG-LLLQ 321 (396)
Q Consensus 268 ~~Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~~--------GG~Ikg-----------------SP~g-lLrQ 321 (396)
.+|-.+-|.++ .+.||-+..+.|+++|+++-+- ..++-+ -+++ .|.|
T Consensus 241 y~G~GIQHIA~-------~T~dI~~tv~~lr~rG~~fl~ip~tYYd~~~~R~~~~~e~ld~Lr~~~IL~D~~~~~~~lLQ 313 (363)
T COG3185 241 YRGEGIQHIAF-------GTDDIYATVAALRERGVKFLPIPETYYDDLDARFPLHGEFLDALRELEILYDGDGGGGELLQ 313 (363)
T ss_pred hCCCcceEEEe-------cccHHHHHHHHHHHcCCccCCCchhHHHHHhhcCCCChHHHHHHHhcCeEeecCCCCcEEEE
Confidence 35777999997 5789999999999999977540 011222 2222 3333
Q ss_pred eeccccceeEEecCCcEeeeccceEEeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhchhhhhh
Q 016038 322 SSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTR 393 (396)
Q Consensus 322 SST~Ad~~~v~FaDG~~~~IPgsfyEFaeR~~lp~~~~l~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~~ 393 (396)
--|. + .+..-|+||+||.. + ++||=+||=...|||-...|..|
T Consensus 314 ift~------------~-~~g~~FFEiIeRR~---g-------------~~GfGegNF~Alfe~~eq~q~rR 356 (363)
T COG3185 314 IFTR------------T-FIGPFFFEIIERRK---G-------------YQGFGEGNFKALFESIEQDQIRR 356 (363)
T ss_pred Eecc------------c-ccCceeEEEEEecc---c-------------cccccccchhhHHHHHHHHHhhh
Confidence 3331 1 25666999999963 1 89999999999999998877655
No 8
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=90.57 E-value=2.5 Score=43.51 Aligned_cols=211 Identities=21% Similarity=0.278 Sum_probs=114.5
Q ss_pred hhCCCHHHHHHHHHhhCCCccc------cc-eEEEeecCCCCCcHHHHHHHHHhcCCeeccccccccCCceeEeecCCCC
Q 016038 114 NRNPTAKAVLELVQSSGNNQIC------YD-HIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSF 186 (396)
Q Consensus 114 ~rvP~a~~i~~lv~~~~g~~i~------nD-H~AfRT~g~~~~Gi~~lariF~~LGY~~~G~Y~Fp~KkL~At~f~ppd~ 186 (396)
=+|-++..+.+...+ +|-+|. +| -|+.|+-=+.-+| +.--..++..||+ |. -+| .|+|+..
T Consensus 97 feVeD~da~~~~~va-~Ga~v~~~p~~~~da~G~v~~A~l~tyg-d~thtlvEr~~y~--g~-FLP-------GF~~v~~ 164 (381)
T KOG0638|consen 97 FEVEDADAIFQEAVA-NGAKVVRPPWEESDAQGAVTYAVLKTYG-DTTHTLVERKGYK--GP-FLP-------GFEPVSS 164 (381)
T ss_pred EEecchHHHHHHHHH-cCCcccCCcceeeccCCcEEEEEEeccc-chhhhhhhhcccc--cc-CCC-------CcccCcc
Confidence 378888899888888 565554 23 4455533345566 6666777777774 43 133 5666543
Q ss_pred CCCCCCCCCCCCCCeEEeeccccCCCCHHHHHHHHHHhhhcCCCchHHHHHHHhcCC----CCCCCCHHHHHHHHHh---
Q 016038 187 HYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSL----TWGKPLYSEFQQLARE--- 259 (396)
Q Consensus 187 ~~~~~~~~~~~~~PRIFISEL~ve~lS~e~Q~iI~~~v~~~~~~~~~~~~~~~l~~~----~W~~Ps~adYe~L~~E--- 259 (396)
+.+ =+.+||..++-+ .-+|...+++.-+.++....++. -|. ..|=+.=.++
T Consensus 165 ~~~------fp~l~~~~~~~i-------------DH~vgn~p~~em~sa~~wy~~~l~Fhrfws---vdd~~v~te~SaL 222 (381)
T KOG0638|consen 165 DAL------FPKLPKGGLNRI-------------DHVVGNQPDGEMESALRWYEKCLGFHRFWS---VDDSQVHTEYSAL 222 (381)
T ss_pred ccc------cCCCCccceeeh-------------hhhhccCCcccchHHHHHHHHhhccccccc---CCcchhhhHHHHH
Confidence 322 123677666543 22333333332222222222211 222 1122222333
Q ss_pred --------------------------hhhhHHHhhh-CCCCcccceecccccccCCCHHHHHHHHHHcCCcccc------
Q 016038 260 --------------------------SEYAAWTLVN-GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS------ 306 (396)
Q Consensus 260 --------------------------SeyAAWia~~-Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~------ 306 (396)
|..--.|..+ |-.+-|++. -+.||-..-+.|+.+|...-+
T Consensus 223 rs~vlan~~esi~mpinEp~~G~k~ksQIqeyv~y~gG~GvQHiaL-------~tedIi~Ai~~lr~rG~eFLs~Ps~YY 295 (381)
T KOG0638|consen 223 RSIVLANYEESIKMPINEPAPGKKKKSQIQEYVEYHGGAGVQHIAL-------NTEDIIEAIRGLRARGGEFLSPPSTYY 295 (381)
T ss_pred HHHHHhcCCccEEEeccCCCCCCccHHHHHHHHHhcCCCceeeeee-------cchHHHHHHHHHHhcCCccccCCHHHH
Confidence 3444444555 335777775 356777777778877753321
Q ss_pred -----C------------------CCeeEeCCCcceEEeeccccceeEEecCCcEeeeccceEEeeeeccCCCCCCCChh
Q 016038 307 -----E------------------GGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEA 363 (396)
Q Consensus 307 -----~------------------GG~IkgSP~glLrQSST~Ad~~~v~FaDG~~~~IPgsfyEFaeR~~lp~~~~l~~~ 363 (396)
+ |=.|-..-.|.|.|--|...- .=|--|+|+|||.-
T Consensus 296 qnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQIFTKplq-----------drpTlFlEiIQR~n---------- 354 (381)
T KOG0638|consen 296 QNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQIFTKPLQ-----------DRPTLFLEIIQRQN---------- 354 (381)
T ss_pred HhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEeeeeccccC-----------CCchHHHHHHHHhc----------
Confidence 0 001111222444444442211 12666999999993
Q ss_pred hhhhhccccCcCCCChhHHHHhhchhhhhh
Q 016038 364 EVKEFHRRDGFEVGNADKIFESTSKEQLTR 393 (396)
Q Consensus 364 el~~~~~~~GF~a~NAdkIFEST~~~~~~~ 393 (396)
.+||-+||=..+|+|--..|+.|
T Consensus 355 -------~~GFGaGNfkaLf~siEeEQ~~r 377 (381)
T KOG0638|consen 355 -------HEGFGAGNFKALFKSIEEEQTKR 377 (381)
T ss_pred -------ccccCcccHHHHHHHHHHHHHhh
Confidence 58999999999999988777755
No 9
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=87.90 E-value=5.4 Score=32.21 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=26.1
Q ss_pred hhCCCCcccceecccccccCCCHHHHHHHHHHcCCcccc
Q 016038 268 VNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 306 (396)
Q Consensus 268 ~~Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 306 (396)
..|-.++|+++ ++.|++++.+.|+++|+++..
T Consensus 68 ~~~~g~~h~~f-------~v~d~~~~~~~l~~~G~~~~~ 99 (128)
T cd07249 68 KRGEGLHHIAF-------EVDDIDAALARLKAQGVRLLQ 99 (128)
T ss_pred cCCCceEEEEE-------EeCCHHHHHHHHHHCCCeeec
Confidence 34566899998 466899999999999997754
No 10
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=86.32 E-value=4.3 Score=35.64 Aligned_cols=42 Identities=12% Similarity=0.312 Sum_probs=29.8
Q ss_pred cceEEEeecCCCCCcHHHHHHHH-HhcCCeeccccccc-cCCceeEeec
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFF-MDYGYTKQDELRFP-AKKLKAFWFS 182 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF-~~LGY~~~G~Y~Fp-~KkL~At~f~ 182 (396)
.||++|++=+ ++.-.+++ ..||+++.+...++ ..+....+++
T Consensus 2 i~Hv~l~V~D-----le~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~ 45 (153)
T cd07257 2 LGHVVLEVPD-----FAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLR 45 (153)
T ss_pred ccEEEEecCC-----HHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEe
Confidence 4899999865 88887888 56999988765555 2334455554
No 11
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=86.02 E-value=9.7 Score=30.89 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=30.2
Q ss_pred cceEEEeecCCCCCcHHHHHHHHH-hcCCeeccccccccCCceeEeec
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFM-DYGYTKQDELRFPAKKLKAFWFS 182 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~-~LGY~~~G~Y~Fp~KkL~At~f~ 182 (396)
.+|+++.+=+ +++..+++. .||++......++..++...++.
T Consensus 2 i~hv~l~v~D-----~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~ 44 (128)
T TIGR03081 2 IDHVGIAVPD-----LEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIA 44 (128)
T ss_pred CCEEEEEeCC-----HHHHHHHHHHHhCCCCccceeCCCCCcEEEEEe
Confidence 4899999755 899999997 69999977544544444444454
No 12
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=85.03 E-value=6.3 Score=33.17 Aligned_cols=32 Identities=13% Similarity=0.388 Sum_probs=26.9
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHhcCCeeccccccc
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFP 172 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~LGY~~~G~Y~Fp 172 (396)
.+|++|++-+ ++.-.++|..||++..+.-.++
T Consensus 4 i~Hi~i~v~D-----l~~s~~FY~~LG~~~~~~~~~~ 35 (142)
T cd08353 4 MDNVGIVVRD-----LEAAIAFFLELGLELEGRAEIE 35 (142)
T ss_pred eeeEEEEeCC-----HHHHHHHHHHcCCEEccccccC
Confidence 5899999866 9999999999999987664444
No 13
>PLN02367 lactoylglutathione lyase
Probab=83.30 E-value=4.3 Score=39.71 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=36.6
Q ss_pred ccccceEEEeecCCCCCcHHHHHHHH-HhcCCeeccccccccCCceeEeecC
Q 016038 133 QICYDHIAFRTFGVNGHGIDSIASFF-MDYGYTKQDELRFPAKKLKAFWFSP 183 (396)
Q Consensus 133 ~i~nDH~AfRT~g~~~~Gi~~lariF-~~LGY~~~G~Y~Fp~KkL~At~f~p 183 (396)
.....|..+|.-+ ++.-.+++ ..|||+....++|+..+.....+..
T Consensus 73 ~~~~~HtmlRVkD-----le~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~ 119 (233)
T PLN02367 73 GYIMQQTMYRIKD-----PKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGY 119 (233)
T ss_pred CcEEEEEEEEeCC-----HHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeec
Confidence 3678999999766 88888888 4799999999999988755554443
No 14
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=79.47 E-value=21 Score=28.56 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=32.9
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHh-cCCeeccccccccCCceeEeecCC
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMD-YGYTKQDELRFPAKKLKAFWFSPP 184 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~-LGY~~~G~Y~Fp~KkL~At~f~pp 184 (396)
.+|+++.|-+ ++.-.+++.. ||+++.....++..+....++..+
T Consensus 1 ~~hv~i~v~d-----~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~ 45 (121)
T cd07233 1 FLHTMLRVKD-----LEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYP 45 (121)
T ss_pred CeeEEEEecC-----cHHHHHHHHhccCCeEEEEEecCCCceEEEEecCC
Confidence 3799999966 8999999975 699998876666545555556544
No 15
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=64.95 E-value=25 Score=32.79 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=36.2
Q ss_pred cccceEEEeecCCCCCcHHHHHHHHH-hcCCeeccccccccCCceeEeecC
Q 016038 134 ICYDHIAFRTFGVNGHGIDSIASFFM-DYGYTKQDELRFPAKKLKAFWFSP 183 (396)
Q Consensus 134 i~nDH~AfRT~g~~~~Gi~~lariF~-~LGY~~~G~Y~Fp~KkL~At~f~p 183 (396)
....|.+||+-+ ++.-.+++. .||++....++++..++....+.+
T Consensus 26 ~~~~Ht~i~V~D-----le~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~ 71 (185)
T PLN03042 26 YIMQQTMFRIKD-----PKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 71 (185)
T ss_pred cEEEEEEEeeCC-----HHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEec
Confidence 457899999877 888888885 799999999999887766555543
No 16
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=64.01 E-value=68 Score=28.10 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=25.2
Q ss_pred ccccceEEEeecCCCCCcHHHHHHHHHh-cCCeeccc
Q 016038 133 QICYDHIAFRTFGVNGHGIDSIASFFMD-YGYTKQDE 168 (396)
Q Consensus 133 ~i~nDH~AfRT~g~~~~Gi~~lariF~~-LGY~~~G~ 168 (396)
+-.-+|++|++=+ ++...++|.. ||+++.+.
T Consensus 7 ~~~l~Hi~l~v~D-----l~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 7 DQGLGHVVLATPD-----PDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred CCccCEEEEEeCC-----HHHHHHHHHHccCCEEEEE
Confidence 3457999999865 9999999975 99998664
No 17
>CHL00193 ycf35 Ycf35; Provisional
Probab=61.12 E-value=8.4 Score=34.44 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=32.2
Q ss_pred cccceecccccccCCCHHHHHHHHHHcCCccccCCCeeEeCCC
Q 016038 274 NHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPD 316 (396)
Q Consensus 274 NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~~GG~IkgSP~ 316 (396)
-||| .++..+.|++.+.+.|++.|++.+..++.|+|--.
T Consensus 2 SHfS----~ikT~i~d~~~L~~AL~dLg~~~~~~~~~vrgy~g 40 (128)
T CHL00193 2 SHFT----KIKTSIQNLNLLKKALNDLNIEWKKENQVIKGYNG 40 (128)
T ss_pred CCcc----cceeEEcCHHHHHHHHHHcCCCceeCCceeeccCC
Confidence 4888 47767999999999999999999986677777543
No 18
>PRK10291 glyoxalase I; Provisional
Probab=39.19 E-value=28 Score=28.97 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=24.9
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHcCCcccc
Q 016038 270 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 306 (396)
Q Consensus 270 Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 306 (396)
|..++|+.+ ++.|++++.++|+++|+++..
T Consensus 63 g~~~~hlaf-------~V~d~~~~~~~l~~~G~~~~~ 92 (129)
T PRK10291 63 GTAYGHIAL-------SVDNAAEACEKIRQNGGNVTR 92 (129)
T ss_pred CCCeeEEEE-------EeCCHHHHHHHHHHcCCcccc
Confidence 456889998 466999999999999997754
No 19
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=38.42 E-value=33 Score=29.06 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=26.4
Q ss_pred hhCCCCcccceecccccccCCCHHHHHHHHHHcCCccccC
Q 016038 268 VNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE 307 (396)
Q Consensus 268 ~~Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~~ 307 (396)
.+|....|+.+ +++||++..+.|+++|.++...
T Consensus 65 ~~~~g~~hia~-------~V~Dvda~~~~l~~~G~~v~~~ 97 (136)
T cd08342 65 KHGDGVCDVAF-------RVDDAAAAYERAVARGAKPVQE 97 (136)
T ss_pred hcCCceEEEEE-------EeCCHHHHHHHHHHcCCeEccC
Confidence 34555789887 5679999999999999988643
No 20
>PRK11478 putative lyase; Provisional
Probab=36.54 E-value=31 Score=28.18 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.9
Q ss_pred cceEEEeecCCCCCcHHHHHHHHH-hcCCeecc
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFM-DYGYTKQD 167 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~-~LGY~~~G 167 (396)
.+|++|+|-+ ++...+++. .||+++..
T Consensus 7 i~hv~l~v~D-----~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 7 VHHIAIIATD-----YAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ecEEEEEcCC-----HHHHHHHHHHHhCCEecc
Confidence 5899999876 899999995 59999864
No 21
>COG5646 Uncharacterized conserved protein [Function unknown]
Probab=36.12 E-value=40 Score=30.41 Aligned_cols=82 Identities=15% Similarity=0.365 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHhhhcCCCchHHHHHHHhcCCCCCCCCHHHHHHHHHhhhhhHHHhhhCCCCcccceeccccc--ccCCC
Q 016038 212 MSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLK--SQLNN 289 (396)
Q Consensus 212 lS~e~Q~iI~~~v~~~~~~~~~~~~~~~l~~~~W~~Ps~adYe~L~~ESeyAAWia~~Gy~~NHfTvsVn~L~--~r~~D 289 (396)
..++.++..+.+..++. +...++..+-.|.+|.+. -+|+-+=||.++=+||. |....
T Consensus 12 ~~pe~r~r~~elr~~ik-----~~~Pea~e~Is~~~P~f~----------------~~gn~LihfsvakkH~~~~P~~~g 70 (126)
T COG5646 12 EPPELRERTEELRTWIK-----AKFPEAAEEISYNLPMFT----------------NQGNFLIHFSVAKKHLGVYPEVAG 70 (126)
T ss_pred CCHHHHHHHHHHHHHHH-----HHCcchhhhhhhcCccee----------------cCCceEEEeehhhccCccCCcccc
Confidence 35677777777765543 111123333455555432 23555668888888886 66789
Q ss_pred HHHHHHHHHHcCCccccCCCeeEeCCC
Q 016038 290 IKSLNQFIEDNGFRLNSEGGVLKVSPD 316 (396)
Q Consensus 290 Ie~vn~~Lk~~G~~ln~~GG~IkgSP~ 316 (396)
|+++.+.|+..|+ ..+.|.|...++
T Consensus 71 I~~fa~~l~~~~y--d~tkg~irfp~~ 95 (126)
T COG5646 71 IDAFADELKEAGY--DYTKGTIRFPWK 95 (126)
T ss_pred hHHHHHHHhhhcc--cccceeEecCcc
Confidence 9999999999999 456678888766
No 22
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=35.96 E-value=22 Score=33.15 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=31.1
Q ss_pred HHHhhhCCCCcccceecccccccCCCHHHHHHHHHH-cCCccccC
Q 016038 264 AWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIED-NGFRLNSE 307 (396)
Q Consensus 264 AWia~~Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~-~G~~ln~~ 307 (396)
+.-++.||.+||..| +|.|++.-.+|-++ .|+.+..+
T Consensus 19 ~~~~~~~~~~~Ht~i-------~V~Dle~Si~FY~~vLG~~~~~r 56 (185)
T PLN03042 19 PDEATKGYIMQQTMF-------RIKDPKASLDFYSRVLGMSLLKR 56 (185)
T ss_pred CCCCCCCcEEEEEEE-------eeCCHHHHHHHHHhhcCCEEEEE
Confidence 456789999999998 68899999999976 79988653
No 23
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.62 E-value=20 Score=27.21 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred ccCcCCCChhHHHHhhchhhhhhc
Q 016038 371 RDGFEVGNADKIFESTSKEQLTRR 394 (396)
Q Consensus 371 ~~GF~a~NAdkIFEST~~~~~~~~ 394 (396)
|+--+.|-|+.||.|+-..|.+|+
T Consensus 9 Ye~i~Pg~aerI~~mae~eq~hR~ 32 (50)
T PF10097_consen 9 YEQILPGAAERIFAMAEKEQEHRH 32 (50)
T ss_pred HHhHCcCHHHHHHHHHHHHHHHHH
Confidence 777889999999999999888775
No 24
>PRK06724 hypothetical protein; Provisional
Probab=35.01 E-value=85 Score=26.97 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=35.5
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHhcCCeec-cccccc--cCCceeEeecCCCC
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMDYGYTKQ-DELRFP--AKKLKAFWFSPPSF 186 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~LGY~~~-G~Y~Fp--~KkL~At~f~ppd~ 186 (396)
-+|+||+. . .+..++++.+.+...|.+.. +.-..+ ..+.++.+|+-||.
T Consensus 64 ~~h~af~v-~-~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG 115 (128)
T PRK06724 64 PRHICYQA-I-NRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNG 115 (128)
T ss_pred ceeEEEec-C-ChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCC
Confidence 57999995 2 56789999999999999863 332332 24567777886664
No 25
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.89 E-value=36 Score=27.00 Aligned_cols=29 Identities=10% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCCcccceecccccccCCCHHHHHHHHHHcCCcccc
Q 016038 271 YAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 306 (396)
Q Consensus 271 y~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 306 (396)
..++|+.+ ++.|++++.++|+++|+.+..
T Consensus 71 ~g~~h~~~-------~v~d~~~~~~~l~~~G~~~~~ 99 (125)
T cd08352 71 CGLRHLAF-------SVEDIEAAVKHLKAKGVEVEP 99 (125)
T ss_pred CCceEEEE-------EeCCHHHHHHHHHHcCCcccc
Confidence 34789998 567999999999999997754
No 26
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=32.54 E-value=1.1e+02 Score=25.76 Aligned_cols=28 Identities=14% Similarity=0.439 Sum_probs=23.1
Q ss_pred cceEEEeecCCCCCcHHHHHHHHH-hcCCeeccc
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFM-DYGYTKQDE 168 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~-~LGY~~~G~ 168 (396)
.+|++|++-+ ++.-.+++. .||+++.+.
T Consensus 4 l~hi~l~v~d-----l~~s~~FY~~vlGl~~~~~ 32 (134)
T cd08360 4 LGHVVLFVPD-----VEAAEAFYRDRLGFRVSDR 32 (134)
T ss_pred eeEEEEEcCC-----HHHHHHHHHHhcCCEEEEE
Confidence 5899999765 899999995 489998765
No 27
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=32.48 E-value=1e+02 Score=25.70 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=32.5
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHhcCCeeccc-cccccCCceeEeecCCCC
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDE-LRFPAKKLKAFWFSPPSF 186 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~LGY~~~G~-Y~Fp~KkL~At~f~ppd~ 186 (396)
..|+||++=+ ++...+.+...|++..+. -.++ ...+...++.|+.
T Consensus 88 ~~hia~~v~d-----~d~~~~~l~~~G~~~~~~~~~~~-~~~r~~~~~DPdG 133 (142)
T cd08353 88 LRRVMFAVDD-----IDARVARLRKHGAELVGEVVQYE-NSYRLCYIRGPEG 133 (142)
T ss_pred ceEEEEEeCC-----HHHHHHHHHHCCCceeCCceecC-CCeEEEEEECCCC
Confidence 5699999855 899999999999998763 1121 3456666776653
No 28
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=31.78 E-value=46 Score=33.57 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=34.8
Q ss_pred hhhhHHHhhhCCCCcccceecccccccCCCHHHHHHHHHHcCCcccc
Q 016038 260 SEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 306 (396)
Q Consensus 260 SeyAAWia~~Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 306 (396)
|+.+.++..+|..+.|+++ ++.|++++.++++++|..+..
T Consensus 60 s~~~~~~~~hg~gv~~iaf-------~V~Dv~~a~~~l~~~Ga~~v~ 99 (353)
T TIGR01263 60 SPAADFAAKHGDGVKDVAF-------RVDDAAAAFEAAVERGAEPVQ 99 (353)
T ss_pred chHHHHHHhCCCceEEEEE-------EECCHHHHHHHHHHCCCEecc
Confidence 5677788889999999998 678999999999999997754
No 29
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=31.56 E-value=38 Score=29.19 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=24.6
Q ss_pred CcccceecccccccCCCHHHHHHHHHHcCCc
Q 016038 273 VNHVTISIHHLKSQLNNIKSLNQFIEDNGFR 303 (396)
Q Consensus 273 ~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ 303 (396)
++-+-|.|+-......|+.+|+..|.+.||.
T Consensus 6 ~~~YVVt~~~~e~~l~d~~~L~~~lt~~GF~ 36 (96)
T PF11080_consen 6 ITRYVVTFEYQEAGLTDINELNNHLTRAGFS 36 (96)
T ss_pred ceEEEEEEEeccCChHHHHHHHHHHHhcCce
Confidence 3445566666677788999999999999993
No 30
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=31.03 E-value=49 Score=25.41 Aligned_cols=29 Identities=7% Similarity=0.304 Sum_probs=23.8
Q ss_pred CCCcccceecccccccCCCHHHHHHHHHHcCCcccc
Q 016038 271 YAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNS 306 (396)
Q Consensus 271 y~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~ 306 (396)
...+|+++ .+.||+++.+.|+++|+.+-.
T Consensus 63 ~~~~~~~~-------~v~d~~~~~~~l~~~g~~~~~ 91 (114)
T cd07245 63 GRDDHIAF-------RVDDLDAFRARLKAAGVPYTE 91 (114)
T ss_pred cccceEEE-------EeCCHHHHHHHHHHcCCCccc
Confidence 35789998 456899999999999998754
No 31
>PF11615 DUF3249: Protein of unknown function (DUF3249); InterPro: IPR021653 This family of proteins represents the gene product of the protein CAF4, the yeast protein YKR036c. This protein contains seven WD40 repeats in its C terminus. The function however is unknown []. ; PDB: 2PQR_D.
Probab=29.47 E-value=10 Score=29.21 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=9.6
Q ss_pred eeeccCCCCCCCChhhhhhhccccCcC
Q 016038 349 AERLVLPQYKNLPEAEVKEFHRRDGFE 375 (396)
Q Consensus 349 aeR~~lp~~~~l~~~el~~~~~~~GF~ 375 (396)
.||||||+|+. |-.-..+++||.
T Consensus 29 eqryplpngaa----eknlpslfegfk 51 (60)
T PF11615_consen 29 EQRYPLPNGAA----EKNLPSLFEGFK 51 (60)
T ss_dssp TTTS---SSS------TT---HHHHHH
T ss_pred ccccCCCCchh----hhccHHHHhhhh
Confidence 48999998843 322244566764
No 32
>PF08187 Tetradecapep: Myoactive tetradecapeptides family; InterPro: IPR012619 This entry consists of myoactive tetradecapeptides that are isolated from the gut of Earthworms, Eisenia foetida (Common brandling worm) and Pheretima vittata (Earthworm). These peptides were termed ETP and PTP respectively. Both peptides showed a potent excitatory action on spontaneous contractions of the anterior gut. These peptides show similarity to Molluscan tetradecapeptides and Arthropodan tridecapeptides [].; GO: 0005184 neuropeptide hormone activity, 0007218 neuropeptide signaling pathway, 0005576 extracellular region
Probab=25.46 E-value=35 Score=19.73 Aligned_cols=10 Identities=60% Similarity=1.079 Sum_probs=8.9
Q ss_pred CcCCCChhHH
Q 016038 373 GFEVGNADKI 382 (396)
Q Consensus 373 GF~a~NAdkI 382 (396)
||..|.||.|
T Consensus 1 gf~dg~adri 10 (14)
T PF08187_consen 1 GFRDGSADRI 10 (14)
T ss_pred Cccccchhhh
Confidence 7889999988
No 33
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.00 E-value=1.5e+02 Score=23.55 Aligned_cols=41 Identities=20% Similarity=0.592 Sum_probs=28.6
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHh-cCCeeccccccccCCceeEee
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMD-YGYTKQDELRFPAKKLKAFWF 181 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~-LGY~~~G~Y~Fp~KkL~At~f 181 (396)
.+|++|++=+ ++...+++.. ||+++...|..+.......|+
T Consensus 2 ~~Hi~l~v~d-----l~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~ 43 (125)
T cd07241 2 IEHVAIWTKD-----LERMKAFYVTYFGATSNEKYHNPRKGFESYFL 43 (125)
T ss_pred ceEEEEEecC-----HHHHHHHHHHHhCCEeeceEeCCCCCceEEEE
Confidence 3799999866 9999999987 799986655444333333333
No 34
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=24.50 E-value=1.2e+02 Score=26.43 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=23.1
Q ss_pred CCCcccceecccccccCCCHHHHHHHHHHcCCccc
Q 016038 271 YAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLN 305 (396)
Q Consensus 271 y~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln 305 (396)
..+||+++.|. ...||+++.+.|+++|+++.
T Consensus 55 ~gl~Hiaf~v~----~~~~v~~~~~~l~~~G~~~~ 85 (141)
T cd07258 55 SHFHHVNFMVT----DIDDIGKALYRIKAHDVKVV 85 (141)
T ss_pred CceEEEEEECC----CHHHHHHHHHHHHHCCCcEE
Confidence 36999998554 23456777999999999764
No 35
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=22.68 E-value=76 Score=28.15 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCCCcccceecccccccCCCHHHHHHHHHHcCCcc
Q 016038 270 GYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRL 304 (396)
Q Consensus 270 Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~l 304 (396)
+-.++|+++ .+.||+++.++|+++|.+.
T Consensus 91 ~~g~~Hla~-------~v~dida~~~~l~~~G~~~ 118 (162)
T TIGR03645 91 KTGVFHFCV-------QDPDVEGLAERIVAAGGKK 118 (162)
T ss_pred cccceEEEE-------EcCCHHHHHHHHHHcCCcc
Confidence 345899998 3669999999999999764
No 36
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=22.40 E-value=92 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=23.5
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHhcCCeecc
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMDYGYTKQD 167 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~LGY~~~G 167 (396)
.+|++|++-+ +++..++|..||+++..
T Consensus 3 i~hv~l~v~d-----~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 3 IDHFALEVPD-----LEVARRFYEAFGLDVRE 29 (112)
T ss_pred eeEEEEecCC-----HHHHHHHHHHhCCcEEe
Confidence 5899999866 99999999999999854
No 37
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=22.15 E-value=81 Score=27.16 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=27.8
Q ss_pred CccccceEEEeecCCCCCcHHHHHHHHH-hcCCeecccccccc
Q 016038 132 NQICYDHIAFRTFGVNGHGIDSIASFFM-DYGYTKQDELRFPA 173 (396)
Q Consensus 132 ~~i~nDH~AfRT~g~~~~Gi~~lariF~-~LGY~~~G~Y~Fp~ 173 (396)
.....+|+.|++-+ +++-.++|. .||++....-+++.
T Consensus 14 ~~~~i~hv~l~v~D-----l~~a~~FY~~vLG~~~~~~~~~~~ 51 (150)
T TIGR00068 14 KKRRLLHTMLRVGD-----LDKSLDFYTEVLGMKLLRKRDFPE 51 (150)
T ss_pred CCceEEEEEEEecC-----HHHHHHHHHHhcCCEEEEEeccCC
Confidence 34568999999877 999999997 59998765433343
No 38
>PRK11700 hypothetical protein; Provisional
Probab=21.51 E-value=1.2e+02 Score=29.17 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=29.7
Q ss_pred HHHHHHHHhh--CCCccccceEEEeecCCCCCcHHHHHHHHHhcCCee
Q 016038 120 KAVLELVQSS--GNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTK 165 (396)
Q Consensus 120 ~~i~~lv~~~--~g~~i~nDH~AfRT~g~~~~Gi~~lariF~~LGY~~ 165 (396)
.+|.++.... +-....-||+|+| .+ .-.--+...+.|+.+|=..
T Consensus 22 ~ki~~la~~L~ldl~~~~~DHialR-~n-~~~tAe~w~~~l~~~G~ll 67 (187)
T PRK11700 22 QKIQELADRLGLDLSQLEADHIALR-CN-QNETAERWRQGFLQCGELL 67 (187)
T ss_pred HHHHHHHHHhCCCcccccCcEEEEe-eC-CHHHHHHHHHHHHHhchhh
Confidence 4555555543 3456779999999 56 4445667777788888655
No 39
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=21.17 E-value=1.5e+02 Score=23.39 Aligned_cols=28 Identities=32% Similarity=0.676 Sum_probs=24.0
Q ss_pred CcccceecccccccCCCHHHHHHHHHH-cCCccccC
Q 016038 273 VNHVTISIHHLKSQLNNIKSLNQFIED-NGFRLNSE 307 (396)
Q Consensus 273 ~NHfTvsVn~L~~r~~DIe~vn~~Lk~-~G~~ln~~ 307 (396)
+||+++ ++.|+++.-++.++ .|+.....
T Consensus 2 l~Hi~i-------~v~d~~~~~~FY~~~lG~~~~~~ 30 (128)
T PF00903_consen 2 LDHIAI-------RVKDLEKAIDFYTDVLGFRLVEE 30 (128)
T ss_dssp EEEEEE-------EESCHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEEE-------EcCCHHHHHHHHHHHhCCcEEee
Confidence 789998 57799999999999 89988764
No 40
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.14 E-value=1.8e+02 Score=23.06 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=31.6
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHhcCCeeccccccccCCceeEeecCCC
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPS 185 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~LGY~~~G~Y~Fp~KkL~At~f~ppd 185 (396)
..|+||++ . +...++.+.+.+...|++..+.-.....+.+...|+-|+
T Consensus 71 ~~hi~f~v-~-~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPd 118 (125)
T cd07241 71 WAHLAFSV-G-SKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPE 118 (125)
T ss_pred eEEEEEEC-C-CHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCC
Confidence 58999995 2 345789999999999998765322222334444566444
No 41
>PF14822 Vasohibin: Vasohibin
Probab=20.87 E-value=1.8e+02 Score=29.11 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHhhCC-Ccc-ccceEEEeecCC-CCCcHHHHHHHHHhcCCeeccccccccCCce
Q 016038 102 RTVLQSMEAVYLNRNPTAKAVLELVQSSGN-NQI-CYDHIAFRTFGV-NGHGIDSIASFFMDYGYTKQDELRFPAKKLK 177 (396)
Q Consensus 102 r~~f~~Lw~~Y~~rvP~a~~i~~lv~~~~g-~~i-~nDH~AfRT~g~-~~~Gi~~lariF~~LGY~~~G~Y~Fp~KkL~ 177 (396)
...|+.||+-+...+|+.++.++.+..... ..+ .-.--.|+ .++ .+.-|..+-..+..|.|.-.|...|+.+|.+
T Consensus 15 ~~tWerMw~~v~k~hpdg~~~~~~i~~~~~lp~~p~P~~P~~~-~~~~~~~~L~~iQ~yi~~LqYN~tg~qfF~i~K~R 92 (246)
T PF14822_consen 15 EETWERMWRHVAKIHPDGKKMVNKIRNAADLPKVPRPSVPSFQ-PSLPIPSRLRAIQNYINSLQYNHTGTQFFEIKKSR 92 (246)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHhhhhcCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHhcCcCCCCceEEEecCCC
Confidence 356789999999999999999998877311 111 00111111 111 1224788888999999999999999988854
No 42
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=20.60 E-value=93 Score=26.93 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.7
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHh-cCCeeccc
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMD-YGYTKQDE 168 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~-LGY~~~G~ 168 (396)
.+|++|++=+ +++..+++.. ||+++...
T Consensus 7 l~Hv~l~v~D-----le~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 7 LDHCLLTGED-----IAETTRFFTDVLDFYLAER 35 (143)
T ss_pred eCEEEEecCC-----HHHHHHHHHHhcCCEEEEE
Confidence 6899999866 7888899955 99987553
No 43
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.52 E-value=1.7e+02 Score=24.64 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=32.2
Q ss_pred cceEEEeecCCCCCcHHHHHHHHHhcCCeeccccccccCCceeEeecCCCC
Q 016038 136 YDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSF 186 (396)
Q Consensus 136 nDH~AfRT~g~~~~Gi~~lariF~~LGY~~~G~Y~Fp~KkL~At~f~ppd~ 186 (396)
.+|+||++ . ...++.+.+.+...|+.....-..+...-++..|+-|+.
T Consensus 67 ~~Hiaf~v-~--~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG 114 (131)
T cd08364 67 YNHIAFKI-S--DSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDN 114 (131)
T ss_pred ceEEEEEc-C--HHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCC
Confidence 57999994 3 257999999999999976532112212235677776654
No 44
>PLN02367 lactoylglutathione lyase
Probab=20.19 E-value=91 Score=30.66 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=29.7
Q ss_pred HHhhhCCCCcccceecccccccCCCHHHHHHHHHH-cCCcccc
Q 016038 265 WTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIED-NGFRLNS 306 (396)
Q Consensus 265 Wia~~Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~-~G~~ln~ 306 (396)
.-++.||.+||..+ |+.|++.--+|-.+ .|+.+..
T Consensus 68 ~~~t~~~~~~Html-------RVkDle~Sl~FYt~vLGm~ll~ 103 (233)
T PLN02367 68 DEATKGYIMQQTMY-------RIKDPKASLDFYSRVLGMSLLK 103 (233)
T ss_pred CCCCCCcEEEEEEE-------EeCCHHHHHHHHHHhcCCEEeE
Confidence 34688999999998 78899999999965 8998765
No 45
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=20.02 E-value=1.9e+02 Score=26.87 Aligned_cols=69 Identities=12% Similarity=0.250 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHhhCCCcc----------ccceEEEeecC-----CCCCcHHHHHHHHHhcCC
Q 016038 99 SFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQI----------CYDHIAFRTFG-----VNGHGIDSIASFFMDYGY 163 (396)
Q Consensus 99 ~~lr~~f~~Lw~~Y~~rvP~a~~i~~lv~~~~g~~i----------~nDH~AfRT~g-----~~~~Gi~~lariF~~LGY 163 (396)
..|+......+..-....-....|.+.+.+ .|=.+ ...+.+.|+++ +++..++...+++..+||
T Consensus 40 ~~l~~~~~~~~~rn~~~~~~~~~i~~~l~~-~gI~~~~lKG~~l~~~Y~~~~~R~~~DiDlLV~~~d~~~a~~~L~~~Gy 118 (249)
T PF14907_consen 40 QRLKSAYRRNALRNLRLLAELQEILAALNA-NGIPVILLKGAALAQLYPDPGLRPMGDIDLLVPPEDLERAVELLEELGY 118 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCEEEEchHHHHHhCCCCCCCCCCCeEEEEeCCcHHHHHHHHHHcCC
Confidence 344455555555555555566777777776 33221 26678899987 577789999999999999
Q ss_pred eeccc
Q 016038 164 TKQDE 168 (396)
Q Consensus 164 ~~~G~ 168 (396)
+....
T Consensus 119 ~~~~~ 123 (249)
T PF14907_consen 119 RIESP 123 (249)
T ss_pred EeccC
Confidence 98774
Done!