BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016039
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W27|A Chain A, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
pdb|1W27|B Chain B, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
Length = 714
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/396 (83%), Positives = 368/396 (92%)
Query: 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINS 60
MEHILDGS+YV+AAQK HE+DPLQKPKQDRYALRTSPQWLGPQ EVIR+STK IEREINS
Sbjct: 319 MEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINS 378
Query: 61 VNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLP 120
VNDNPLIDVSRNKA+HGGNFQGTPIGVSMDN+RLAIA+IGKLMFAQFSELVNDFY+NGLP
Sbjct: 379 VNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLP 438
Query: 121 SNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARK 180
SNLSGGRNP LDYGFKGAEIAMA+YCSELQFLANPVTNHVQSAEQHNQDVNSLGLIS+RK
Sbjct: 439 SNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRK 498
Query: 181 TAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240
T+EAV+ILKLMS+T+L+ LCQAIDLRHLEENLKSTVKNT+S VAK+VLTMGVNGELHPSR
Sbjct: 499 TSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSR 558
Query: 241 FCEKDLLKVVDREYVFSYADDPCSATYPLMRKLRQVLVDHALTNNEDLKNANASIFLKIG 300
FCEKDLL+VVDREY+F+Y DDPCSATYPLM+KLRQ LV+HAL N ++ +N + SIF KI
Sbjct: 559 FCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIA 618
Query: 301 AFEEELKTLLPKEVESARSAFESGNLEIPNRIKECRSYPLYRFVREELGARYLTGEKAIS 360
FE+ELK LLPKEVESAR+A ESGN IPNRI+ECRSYPLY+FVR+ELG YLTGEK S
Sbjct: 619 TFEDELKALLPKEVESARAALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTS 678
Query: 361 PGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPIC 396
PGEE +KVF A+ +G+IIDPLLECL+ W+G+PLPIC
Sbjct: 679 PGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 714
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|B Chain B, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|C Chain C, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|D Chain D, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|4BAB|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
Length = 705
Score = 358 bits (918), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 184/398 (46%), Positives = 258/398 (64%), Gaps = 15/398 (3%)
Query: 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINS 60
+E +L S + E +++++ ID L+KPKQDRYALR+SPQWL P + IR +T ++E E+NS
Sbjct: 310 LEWLLRSSPFQELSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNS 369
Query: 61 VNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLP 120
NDNP+ID + ++ALHG NFQG+ +G MD R+A+A +GKL+FAQF+EL+ ++YSNGLP
Sbjct: 370 ANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLP 429
Query: 121 SNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARK 180
NLS G + +DYG KG +IAMAAY SELQ+LANPVT HV SAEQHNQD+NSL LISARK
Sbjct: 430 GNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARK 489
Query: 181 TAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240
T EA+DILKLM +++L A+CQA+DLR LEE L V+N +S +A + G+ +
Sbjct: 490 TEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADEC---GLPND----- 541
Query: 241 FCEKDLLKVVDREYVFSYADDPCSATYPLMRKLRQVLVDHALTNNEDLKNANASIFLKIG 300
+ LL V V++Y + PC T PL+ L+Q D L ++ ++ ++
Sbjct: 542 -TKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLA 600
Query: 301 AFEEELKTLLPKEVESARSAFE------SGNLEIPNRIKECRSYPLYRFVREELGARYLT 354
FE+ L L E+ + R +E + N + RI+ + P YRFVREEL ++
Sbjct: 601 EFEKRLSDRLENEMTAVRVLYEKKGHKTADNNDALVRIQGSKFLPFYRFVREELDTGVMS 660
Query: 355 GEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSP 392
+ +P E+ KVF AI G+I PLL CL+ + G P
Sbjct: 661 ARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFLGQP 698
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
Length = 705
Score = 358 bits (918), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 184/398 (46%), Positives = 258/398 (64%), Gaps = 15/398 (3%)
Query: 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINS 60
+E +L S + E +++++ ID L+KPKQDRYALR+SPQWL P + IR +T ++E E+NS
Sbjct: 310 LEWLLRSSPFQELSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNS 369
Query: 61 VNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLP 120
NDNP+ID + ++ALHG NFQG+ +G MD R+A+A +GKL+FAQF+EL+ ++YSNGLP
Sbjct: 370 ANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLP 429
Query: 121 SNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARK 180
NLS G + +DYG KG +IAMAAY SELQ+LANPVT HV SAEQHNQD+NSL LISARK
Sbjct: 430 GNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARK 489
Query: 181 TAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240
T EA+DILKLM +++L A+CQA+DLR LEE L V+N +S +A + G+ +
Sbjct: 490 TEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADEC---GLPND----- 541
Query: 241 FCEKDLLKVVDREYVFSYADDPCSATYPLMRKLRQVLVDHALTNNEDLKNANASIFLKIG 300
+ LL V V++Y + PC T PL+ L+Q D L ++ ++ ++
Sbjct: 542 -TKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLA 600
Query: 301 AFEEELKTLLPKEVESARSAFE------SGNLEIPNRIKECRSYPLYRFVREELGARYLT 354
FE+ L L E+ + R +E + N + RI+ + P YRFVREEL ++
Sbjct: 601 EFEKRLSDRLENEMTAVRVLYEKKGHKTADNNDALVRIQGSKFLPFYRFVREELDTGVMS 660
Query: 355 GEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSP 392
+ +P E+ KVF AI G+I PLL CL+ + G P
Sbjct: 661 ARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFLGQP 698
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase
pdb|3NZ4|B Chain B, Crystal Structure Of A Taxus Phenylalanine Aminomutase
Length = 696
Score = 354 bits (909), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 182/398 (45%), Positives = 257/398 (64%), Gaps = 15/398 (3%)
Query: 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINS 60
+E +L S + + +++++ ID L+KPKQDRYALR+SPQWL P + IR +T ++E E+NS
Sbjct: 290 LEWLLRSSPFQDLSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNS 349
Query: 61 VNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLP 120
NDNP+ID + ++ALHG NFQG+ +G MD R+A+A +GKL+FAQF+EL+ ++YSNGLP
Sbjct: 350 ANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLP 409
Query: 121 SNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARK 180
NLS G + +DYG KG +IAMAAY SELQ+LANPVT HV SAEQHNQD+NSL LISARK
Sbjct: 410 GNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARK 469
Query: 181 TAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240
T EA+DILKLM +++L A+CQA+DLR LEE L V+N +S +A + G+ +
Sbjct: 470 TDEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADEC---GLPND----- 521
Query: 241 FCEKDLLKVVDREYVFSYADDPCSATYPLMRKLRQVLVDHALTNNEDLKNANASIFLKIG 300
+ LL V V++Y + PC T PL+ L+Q L ++ ++ ++
Sbjct: 522 -TKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFGSILALHKKDGIETDTLVDRLA 580
Query: 301 AFEEELKTLLPKEVESARSAFE------SGNLEIPNRIKECRSYPLYRFVREELGARYLT 354
FE+ L L E+ + R +E + N + RI+ R P YRFVR+EL ++
Sbjct: 581 EFEKRLSDRLENEMTAVRVLYEKKGHKTADNNDALVRIQGSRFLPFYRFVRDELDTGVMS 640
Query: 355 GEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSP 392
+ +P E+ KVF AI G+I PLL CL+ + G P
Sbjct: 641 ARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFLGQP 678
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6J|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|C Chain C, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|D Chain D, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|E Chain E, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|F Chain F, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|G Chain G, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|H Chain H, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
Length = 714
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 192/373 (51%), Gaps = 30/373 (8%)
Query: 27 KQDRYALRTSPQWLGP-QAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPI 85
+QDRY LRTSPQWLGP +++I A S DNPLIDV + HGGNFQ +
Sbjct: 357 RQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAAV 416
Query: 86 GVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAY 145
+ + +RL +A IGKL F Q +E +N + GLPS L+ +P L Y KG +IA AAY
Sbjct: 417 ANTXEKTRLGLAQIGKLNFTQLTEXLNAGXNRGLPSCLAA-EDPSLSYHCKGLDIAAAAY 475
Query: 146 CSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDL 205
SEL LANPVT HVQ AE NQ VNSL LISAR+T E+ D+L L+ +T+L + QAIDL
Sbjct: 476 TSELGHLANPVTTHVQPAEXANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDL 535
Query: 206 RHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSRFCE---KDLLKVVDREYVFSYADDP 262
R +E K I + + G E K L K +++
Sbjct: 536 RAIEFEFKKQFGPAIVSLIDQHFGSAXTGSNLRDELVEKVNKTLAKRLEQ---------- 585
Query: 263 CSATYPLMRKLRQVLVDHALTNNEDLKNANASI----FLKIGAFEEELKTLLPKEV-ESA 317
+ +Y L+ + A T E L + + S+ K+ A E + L ++V E+
Sbjct: 586 -TNSYDLVPRWHDAFSFAAGTVVEVLSSTSLSLAAVNAWKVAAAESAIS--LTRQVRETF 642
Query: 318 RSAFESGNLEIPNRIKECRSYPLYRFVREELGAR-----YLTGEKAISPGEECDKVFTAI 372
SA + + + R+ LY FVREELG + G++ ++ G K++ AI
Sbjct: 643 WSAASTSSPAL--SYLSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAI 700
Query: 373 CQGKIIDPLLECL 385
G+I + LL+ L
Sbjct: 701 KSGRINNVLLKXL 713
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
Length = 716
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 137/373 (36%), Positives = 192/373 (51%), Gaps = 30/373 (8%)
Query: 27 KQDRYALRTSPQWLGP-QAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPI 85
+QDRY LRTSPQWLGP +++I A S DNPLIDV + HGGNFQ +
Sbjct: 359 RQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHGGNFQAAAV 418
Query: 86 GVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAY 145
+ + +RL +A IGKL F Q +E +N + GLPS L+ +P L Y KG +IA AAY
Sbjct: 419 ANTXEKTRLGLAQIGKLNFTQLTEXLNAGXNRGLPSCLAA-EDPSLSYHCKGLDIAAAAY 477
Query: 146 CSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDL 205
SEL LANPVT HVQ AE NQ VNSL LISAR+T E+ D+L L+ +T+L + QAIDL
Sbjct: 478 TSELGHLANPVTTHVQPAEXANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDL 537
Query: 206 RHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSRFCE---KDLLKVVDREYVFSYADDP 262
R +E K I + + G E K L K +++
Sbjct: 538 RAIEFEFKKQFGPAIVSLIDQHFGSAXTGSNLRDELVEKVNKTLAKRLEQ---------- 587
Query: 263 CSATYPLMRKLRQVLVDHALTNNEDLKNANASI----FLKIGAFEEELKTLLPKEV-ESA 317
+ +Y L+ + A T E L + + S+ K+ A E + L ++V E+
Sbjct: 588 -TNSYDLVPRWHDAFSFAAGTVVEVLSSTSLSLAAVNAWKVAAAESAIS--LTRQVRETF 644
Query: 318 RSAFESGNLEIPNRIKECRSYPLYRFVREELGAR-----YLTGEKAISPGEECDKVFTAI 372
SA + + + R+ LY FVREELG + G++ ++ G K++ AI
Sbjct: 645 WSAASTSSPAL--SYLSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAI 702
Query: 373 CQGKIIDPLLECL 385
G+I + LL+ L
Sbjct: 703 KSGRINNVLLKXL 715
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Nostoc Punctiforme
Length = 567
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 1/180 (0%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
QDRY+LR Q++GP + + TK IE E+NSV DNPLIDV + HGGNF G +GV
Sbjct: 309 QDRYSLRCLAQFIGPIVDGVSEITKQIEVEMNSVTDNPLIDVENQVSYHGGNFLGQYVGV 368
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+MD R I + K + Q + LV+ +SNGLP +L G + ++ G KG +I+ +
Sbjct: 369 TMDRLRYYIGLLAKHIDVQIALLVSPEFSNGLPPSLVGNSDRKVNMGLKGLQISGNSIMP 428
Query: 148 ELQFLANPVTNHVQS-AEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLR 206
L F N + + + AEQ NQ++NS G ISA T +VDI + + L+ QA+DLR
Sbjct: 429 LLSFYGNSLADRFPTHAEQFNQNINSQGYISANLTRRSVDIFQNYMAIALMFGVQAVDLR 488
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
Length = 565
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 102/180 (56%), Gaps = 1/180 (0%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
QDRY+LR PQ+LGP + I K IE EINSV DNPLIDV + HGGNF G +G+
Sbjct: 309 QDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGM 368
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
MD+ R I + K + Q + L + +SNGLP +L G R ++ G KG +I +
Sbjct: 369 GMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNSIMP 428
Query: 148 ELQFLANPVTNHVQS-AEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLR 206
L F N + + + AEQ NQ++NS G SA +VDI + + L+ QA+DLR
Sbjct: 429 LLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAVDLR 488
>pdb|3CZO|A Chain A, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|B Chain B, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|C Chain C, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|D Chain D, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
Length = 539
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 109/203 (53%), Gaps = 1/203 (0%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
QDRY+LR PQ+LGP + I K IE EINSV DNPLIDV + HGGNF G +G
Sbjct: 285 QDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGX 344
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
D+ R I + K + Q + L + +SNGLP +L G R ++ G KG +I +
Sbjct: 345 GXDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNXGLKGLQICGNSIXP 404
Query: 148 ELQFLANPVTNHVQS-AEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLR 206
L F N + + + AEQ NQ++NS G SA +VDI + + L QA+DLR
Sbjct: 405 LLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALXFGVQAVDLR 464
Query: 207 HLEENLKSTVKNTISQVAKKVLT 229
++ + ++S +++ +
Sbjct: 465 TYKKTGHYDARASLSPATERLYS 487
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 118/236 (50%), Gaps = 28/236 (11%)
Query: 19 EIDPLQKPK----QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKA 74
E+D L K +D Y++R +PQ LGP A+ ++ +++ E+NS NDNPLID + +
Sbjct: 302 EMDGLVKASNHQIEDAYSIRCTPQILGPVADTLKNIKQTLTNELNSSNDNPLIDQTTEEV 361
Query: 75 LHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYG 134
H G+F G + ++MD+ +A+ ++ L + ++ SNGLP L N L G
Sbjct: 362 FHNGHFHGQYVSMAMDHLNIALVTMMNLANRRIDRFMDKSNSNGLPPFLC-AENAGLRLG 420
Query: 135 FKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSST 194
G + A+ +E + P++ S QD+ S GL++AR+ E + LK + S
Sbjct: 421 LMGGQFMTASITAESRASCMPMSIQSLSTTGDFQDIVSFGLVAARRVREQLKNLKYVFSF 480
Query: 195 YLIALCQAIDLR---------------------HLEENLKSTVKNTISQVAKKVLT 229
L+ CQA+D+R +LEE+ T+ + I +A+ VLT
Sbjct: 481 ELLCACQAVDIRGTAGLSKRTRALYDKTRTLVPYLEED--KTISDYIESIAQTVLT 534
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
pdb|2QVE|B Chain B, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
Length = 526
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 11/225 (4%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
Q Y+LR PQ +G + + + + E+NS NDNPL + HG NF G PI
Sbjct: 292 QKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQPIAF 350
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+MD +A+ +G L Q + ++N S GLP L G +P L GF GA+ A +
Sbjct: 351 AMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPATALVA 409
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAV-DILKLMSSTYLIALCQAIDLR 206
E + + T V S NQDV S+GLISAR + + K+++ YL A QA+D+
Sbjct: 410 ENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQAVDIS 467
Query: 207 HLEENLKSTVKNTISQVAKKVLTMGVNGELHPSRFCEKDLLKVVD 251
+ L K T V + V T+GV+ R+ D+ V D
Sbjct: 468 GRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 506
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam
pdb|2RJR|B Chain B, Substrate Mimic Bound To Sgtam
pdb|2RJS|A Chain A, Sgtam Bound To Substrate Mimic
pdb|2RJS|B Chain B, Sgtam Bound To Substrate Mimic
Length = 537
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 11/225 (4%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
Q Y+LR PQ +G + + + + E+NS NDNPL + HG NF G PI
Sbjct: 303 QKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQPIAF 361
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+MD +A+ +G L Q + ++N S GLP L G +P L GF GA+ A +
Sbjct: 362 AMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPATALVA 420
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAV-DILKLMSSTYLIALCQAIDLR 206
E + + T V S NQDV S+GLISAR + + K+++ YL A QA+D+
Sbjct: 421 ENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQAVDIS 478
Query: 207 HLEENLKSTVKNTISQVAKKVLTMGVNGELHPSRFCEKDLLKVVD 251
+ L K T V + V T+GV+ R+ D+ V D
Sbjct: 479 GRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 517
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
pdb|3KDY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
Length = 537
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 11/225 (4%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
Q Y+LR PQ +G + + + + E+NS NDNPL + HG NF G PI
Sbjct: 303 QKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQPIAF 361
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+MD +A+ +G L Q + ++N S GLP L G +P L GF GA+ A +
Sbjct: 362 AMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPATALVA 420
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAV-DILKLMSSTYLIALCQAIDLR 206
E + + T V S NQDV S+GLISAR + + K+++ YL A QA+D+
Sbjct: 421 ENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQAVDIS 478
Query: 207 HLEENLKSTVKNTISQVAKKVLTMGVNGELHPSRFCEKDLLKVVD 251
+ L K T V + V T+GV+ R+ D+ V D
Sbjct: 479 GRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 517
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
pdb|3KDZ|B Chain B, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
Length = 537
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 11/225 (4%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
Q Y+LR PQ +G + + + + E+NS NDNPL + HG NF G PI
Sbjct: 303 QKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQPIAF 361
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+MD +A+ +G L Q + ++N S GLP L G +P L GF GA+ A +
Sbjct: 362 AMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPATALVA 420
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAV-DILKLMSSTYLIALCQAIDLR 206
E + + T V S NQDV S+GLISAR + + K+++ YL A QA+D+
Sbjct: 421 ENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQAVDIS 478
Query: 207 HLEENLKSTVKNTISQVAKKVLTMGVNGELHPSRFCEKDLLKVVD 251
+ L K T V + V T+GV+ R+ D+ V D
Sbjct: 479 GRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 517
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
pdb|2OHY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
Length = 539
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 11/225 (4%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
Q Y+LR PQ +G + + + + E+NS NDNPL + HG NF G PI
Sbjct: 305 QKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FEGKEIFHGANFHGQPIAF 363
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+MD +A+ +G L Q + ++N S GLP L G +P L GF GA+ A +
Sbjct: 364 AMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPGLHSGFAGAQYPATALVA 422
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAV-DILKLMSSTYLIALCQAIDLR 206
E + + T V S NQDV S+GLISAR + + K+++ YL A QA+D+
Sbjct: 423 ENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAA-AQAVDIS 480
Query: 207 HLEENLKSTVKNTISQVAKKVLTMGVNGELHPSRFCEKDLLKVVD 251
+ L K T V + V T+GV+ R+ D+ V D
Sbjct: 481 GRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELVAD 519
>pdb|2O6Y|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O7B|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7D|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
Length = 521
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 11/210 (5%)
Query: 5 LDGSS----YVEAAQKFHEIDPLQKPK--QDRYALRTSPQWLGPQAEVIRASTKSIEREI 58
+DGS+ +V A ++ D +P+ QD Y+LR +PQ LG + + + + E+
Sbjct: 266 VDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIEL 325
Query: 59 NSVNDNPLIDVSRN-KALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSN 117
N+V DNP+ + ALHGGNF G + ++ D A+ + L Q + L ++ +
Sbjct: 326 NAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNR 385
Query: 118 GLPSNLSGGRNPC-LDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLI 176
GLP L R P L+ GF GA++ A +E++ P + H S NQDV SLG I
Sbjct: 386 GLPPFLH--RGPAGLNSGFMGAQVTATALLAEMRA-TGPASIHSISTNAANQDVVSLGTI 442
Query: 177 SARKTAEAVDILKLMSSTYLIALCQAIDLR 206
+AR E +D + + + L QA +LR
Sbjct: 443 AARLCREKIDRWAEILAILALCLAQAAELR 472
>pdb|2O78|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O7E|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7F|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
Length = 521
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 11/210 (5%)
Query: 5 LDGSS----YVEAAQKFHEIDPLQKPK--QDRYALRTSPQWLGPQAEVIRASTKSIEREI 58
+DGS+ +V A ++ D +P+ QD Y+LR +PQ LG + + + + E+
Sbjct: 266 VDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIEL 325
Query: 59 NSVNDNPLIDVSRN-KALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSN 117
N+V DNP+ + ALHGGNF G + ++ D A+ + L Q + L ++ +
Sbjct: 326 NAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNR 385
Query: 118 GLPSNLSGGRNPC-LDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLI 176
GLP L R P L+ GF GA++ A +E++ P + H S NQDV SLG I
Sbjct: 386 GLPPFLH--RGPAGLNSGFMGAQVTATALLAEMRA-TGPASIHSISTNAANQDVVSLGTI 442
Query: 177 SARKTAEAVDILKLMSSTYLIALCQAIDLR 206
+AR E +D + + + L QA +LR
Sbjct: 443 AARLCREKIDRWAEILAILALCLAQAAELR 472
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From
Pseudomonas Putida
Length = 509
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 6/190 (3%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
QD Y+LR PQ +G +R + + + E N+V+DNPL+ + + GGNF P+ +
Sbjct: 277 QDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAM 336
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+ DN LAIA IG L + S L+ D + + LP L N ++ GF A++ AA S
Sbjct: 337 AADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALAS 393
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRH 207
E + L++P + + +D S+ + ++ E + + + + + CQ +DLR
Sbjct: 394 ENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR- 452
Query: 208 LEENLKSTVK 217
+ LK++ K
Sbjct: 453 --KGLKTSAK 460
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Inhibited With L-Cysteine
pdb|1B8F|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Length = 507
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 6/190 (3%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
QD Y+LR PQ +G +R + + + E N+V+DNPL+ + + GGNF P+ +
Sbjct: 275 QDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAM 334
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+ DN LAIA IG L + S L+ D + + LP L N ++ GF A++ AA S
Sbjct: 335 AADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALAS 391
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRH 207
E + L++P + + +D S+ + ++ E + + + + + CQ +DLR
Sbjct: 392 ENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR- 450
Query: 208 LEENLKSTVK 217
+ LK++ K
Sbjct: 451 --KGLKTSAK 458
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From
Pseudomonas Putida
Length = 507
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 6/190 (3%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
QD ++LR PQ +G +R + + + E N+V+DNPL+ + + GGNF P+ +
Sbjct: 275 QDPFSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFHAEPVAM 334
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+ DN LAIA IG L + S L+ D + + LP L N ++ GF A++ AA S
Sbjct: 335 AADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALAS 391
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRH 207
E + L++P + + +D S+ + ++ E + + + + + CQ +DLR
Sbjct: 392 ENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR- 450
Query: 208 LEENLKSTVK 217
+ LK++ K
Sbjct: 451 --KGLKTSAK 458
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 507
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 6/190 (3%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
QD Y+LR PQ +G +R + + + E N+V+DNPL+ + + GGN P+ +
Sbjct: 275 QDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNAHAEPVAM 334
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+ DN LAIA IG L + S L+ D + + LP L N ++ GF A++ AA S
Sbjct: 335 AADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALAS 391
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRH 207
E + L++P + + +D S+ + ++ E + + + + + CQ +DLR
Sbjct: 392 ENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR- 450
Query: 208 LEENLKSTVK 217
+ LK++ K
Sbjct: 451 --KGLKTSAK 458
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 6/190 (3%)
Query: 28 QDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGV 87
QD Y+LR PQ +G +R + + + E N+V+DNPL+ + + GGN P+ +
Sbjct: 277 QDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNGHAEPVAM 336
Query: 88 SMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCS 147
+ DN LAIA IG L + S L+ D + + LP L N ++ GF A++ AA S
Sbjct: 337 AADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVTAAALAS 393
Query: 148 ELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRH 207
E + L++P + + +D S+ + ++ E + + + + + CQ +DLR
Sbjct: 394 ENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLR- 452
Query: 208 LEENLKSTVK 217
+ LK++ K
Sbjct: 453 --KGLKTSAK 460
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,325,732
Number of Sequences: 62578
Number of extensions: 452348
Number of successful extensions: 922
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 30
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)