Query 016039
Match_columns 396
No_of_seqs 244 out of 858
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:14:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02457 phenylalanine ammonia 100.0 1E-118 2E-123 948.6 38.0 396 1-396 311-706 (706)
2 KOG0222 Phenylalanine and hist 100.0 5E-114 1E-118 862.1 27.6 388 1-396 328-715 (715)
3 TIGR01226 phe_am_lyase phenyla 100.0 2E-109 4E-114 876.2 35.3 385 1-386 296-680 (680)
4 COG2986 HutH Histidine ammonia 100.0 6.9E-71 1.5E-75 556.2 21.6 236 1-254 257-492 (498)
5 TIGR01225 hutH histidine ammon 100.0 2E-68 4.2E-73 553.4 23.4 237 1-254 254-490 (506)
6 TIGR03832 Tyr_2_3_mutase tyros 100.0 5.4E-68 1.2E-72 550.7 23.4 243 1-252 253-506 (507)
7 PRK09367 histidine ammonia-lya 100.0 5.3E-67 1.2E-71 543.0 22.6 236 1-254 257-492 (500)
8 PF00221 Lyase_aromatic: Aroma 100.0 3.9E-63 8.4E-68 512.4 20.9 216 1-228 254-469 (473)
9 cd00332 PAL-HAL Phenylalanine 100.0 1.7E-62 3.7E-67 503.4 19.6 196 1-206 249-444 (444)
10 cd01594 Lyase_I_like Lyase cla 99.4 1.3E-12 2.8E-17 122.9 7.5 132 24-191 94-230 (231)
11 PLN02972 Histidyl-tRNA synthet 77.1 3.1 6.8E-05 46.5 4.7 76 2-107 85-160 (763)
12 COG1441 MenC O-succinylbenzoat 53.9 7.1 0.00015 37.8 1.5 92 270-386 59-155 (321)
13 TIGR01226 phe_am_lyase phenyla 46.7 4.7E+02 0.01 29.4 14.3 56 269-324 560-615 (680)
14 PF11868 DUF3388: Protein of u 27.0 13 0.00029 34.2 -1.3 41 336-376 26-80 (192)
15 PF14419 SPOUT_MTase_2: AF2226 24.1 1.8E+02 0.004 26.7 5.4 72 298-377 47-122 (173)
16 PF07377 DUF1493: Protein of u 20.2 87 0.0019 26.4 2.5 30 338-367 6-35 (111)
No 1
>PLN02457 phenylalanine ammonia-lyase
Probab=100.00 E-value=9.9e-119 Score=948.65 Aligned_cols=396 Identities=87% Similarity=1.317 Sum_probs=383.2
Q ss_pred ChhhhcCCccchhhhhcccCCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCC
Q 016039 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNF 80 (396)
Q Consensus 1 ~r~lL~GS~l~~~~~~~~~~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF 80 (396)
||++|+||++++...+.+..+|..+++||||||||+||||||++|+|++++++|++||||+||||||++++++++|||||
T Consensus 311 ir~lL~GS~l~~~~~~~~~~~~~~~~vQD~YSLRc~PQvlGp~~d~l~~a~~~ie~ElNS~tDNPLId~~~~~vl~GGNF 390 (706)
T PLN02457 311 MEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGNF 390 (706)
T ss_pred HHHHhCcCccchhhhhccccccccCcCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCceeCCCCceeeCCCC
Confidence 68999999999876655666766789999999999999999999999999999999999999999999988899999999
Q ss_pred CcchhHHHhHhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhhcCCCCccc
Q 016039 81 QGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHV 160 (396)
Q Consensus 81 ~~~~va~a~d~l~~Ala~l~~~~~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~~~La~P~s~~~ 160 (396)
||+||+++||++++||+++|++++||+++|+||.+|+|||+||+++++||++||||++||++|||++||++||||+|+|+
T Consensus 391 ~g~~va~amD~l~lAla~lg~ls~rr~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~~~q~taAAl~sEl~~LA~PvS~~~ 470 (706)
T PLN02457 391 QGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHV 470 (706)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHhhcCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCc
Confidence 99999999999999999999999999999999999999999999756899999999999999999999999999999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q 016039 161 QSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240 (396)
Q Consensus 161 ~~~~~~~eD~~S~a~~aar~~~~~v~~l~~i~A~ell~a~QA~dlR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dR 240 (396)
+|+++|||||||||++||||+.+++|++++|+||||+++|||+|||+++++|+++++++++++|+++++.+.++.+.+.|
T Consensus 471 ~pt~~~nED~~Smg~~sArkt~e~ve~l~~~lAieLl~a~QAlDLR~~~~~l~~~~~~~~~~vr~~v~~~~~~~~~~~~~ 550 (706)
T PLN02457 471 QSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSAVKNTVSQVAKKTLTTGANGELHPSR 550 (706)
T ss_pred ccccCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHccccCCCccccccc
Confidence 99999999999999999999999999999999999999999999999888999999999999999999998899999999
Q ss_pred cCHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHHHHHhcccccccCcchhHhhhHHHHHHHHHhhcHHHHHHHHHH
Q 016039 241 FCEKDLLKVVDREYVFSYADDPCSATYPLMRKLRQVLVDHALTNNEDLKNANASIFLKIGAFEEELKTLLPKEVESARSA 320 (396)
Q Consensus 241 ~~~~dl~~~~~~~~~~~~~~d~~~~~~~l~~~l~~vl~~~~l~~~~~~~~~~~~~~~~i~~fe~el~~~L~~~~~~~R~a 320 (396)
++++|+.+++++.++|+|+||||+++||+|++++++||+|++++++.+++..+++|++|..|+++++.+|+++|+++|++
T Consensus 551 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~~~l~~~~~~~r~~ 630 (706)
T PLN02457 551 FCEKDLLKVVDREPVFSYIDDPCSATYPLMQKLRQVLVEHALANGEAEKNASTSVFRKIGAFEEELKAALPKEVEAAREA 630 (706)
T ss_pred cCHHHHHHHHhhcceecccCCCcccchhHHHHHHHHHHHHHhhCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877777778999999999999999999999999999
Q ss_pred hhcCCCCCccccccCCcchhHHHHHhhhCccccccccccCCCccHHHHHHHHhcCcchhhHHHhhccccCCCCCCC
Q 016039 321 FESGNLEIPNRIKECRSYPLYRFVREELGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPIC 396 (396)
Q Consensus 321 f~~g~~~~~~~i~~~~S~pLY~FVR~eLgvp~~~G~~~~T~G~~is~IyeAIr~G~l~d~ll~cl~~~~~~p~~~~ 396 (396)
|++|..++||+|++|||||||+|||+|||||||+|++++|||+||||||+|||+|+|++|||+||++|+|+|+|||
T Consensus 631 ~~~~~~~~~~ri~~~~s~~lY~fVR~~L~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~~ 706 (706)
T PLN02457 631 YENGTAPIPNRIKECRSYPLYRFVREELGTELLTGEKTRSPGEEFDKVFDAICQGKLIDPLLECLKEWNGAPLPIC 706 (706)
T ss_pred HhcCCccccchhhcCcchHHHHHHHHHcCCccccCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhcCCCCCCCC
Confidence 9999888999999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.9e-114 Score=862.13 Aligned_cols=388 Identities=79% Similarity=1.197 Sum_probs=379.6
Q ss_pred ChhhhcCCccchhhhhcccCCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCC
Q 016039 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNF 80 (396)
Q Consensus 1 ~r~lL~GS~l~~~~~~~~~~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF 80 (396)
||++|+||.+.+...+.|..||+++++||+|.+||+||||||+.|.|+++++.|++||||++|||+||.++++++|||||
T Consensus 328 m~~iLd~ss~~ke~ae~Hr~dpl~k~~QD~YaLR~~PQ~~G~~~evI~fatkiIe~EiNSvnDNPli~vsR~kai~GGNF 407 (715)
T KOG0222|consen 328 MEHILDGSSYPKEAAESHRMDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKIIEREINSVNDNPLIDVSRNKAIHGGNF 407 (715)
T ss_pred HHHHhcccccHHHHHHHhccCccccchhhhhhhhcCchhhchHHHHHHHHHHHHHHHhhccCCCcceecccccccccCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHhHhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhhcCCCCccc
Q 016039 81 QGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHV 160 (396)
Q Consensus 81 ~~~~va~a~d~l~~Ala~l~~~~~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~~~La~P~s~~~ 160 (396)
||+|++.|||++++|++.||+++|+|+.+|+|+.+|+|||.||+++++||++||||++|++||+|++||++||||+|+|+
T Consensus 408 qGt~~~~AmD~~~laiaei~kl~~~q~e~LvN~~~nngLPs~Lt~~rn~~Ld~Gf~~ae~a~As~~SE~q~L~~P~t~~~ 487 (715)
T KOG0222|consen 408 QGTPIGVAMDNLRLAIAEIGKLMFAQFEELVNDFYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTVHV 487 (715)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCccccCCCCCCcccchhHHHHHHHHHHhhhhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q 016039 161 QSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240 (396)
Q Consensus 161 ~~~~~~~eD~~S~a~~aar~~~~~v~~l~~i~A~ell~a~QA~dlR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dR 240 (396)
+|+++|||||||||.+|+||+.++|+++++|+++||+++|||+|||++++.+..++...+.++++.|++ ++.+||
T Consensus 488 ~sas~~nqD~~SlG~~ssRKt~~aVe~lk~m~t~~LvA~CQ~id~rhLe~ll~ta~~~kV~qlaksVl~-----~l~~dR 562 (715)
T KOG0222|consen 488 QSASQHNQDVNSLGLISSRKTLEAVEILKLMSTTELVAACQAIDLRHLEELLKTAVLEKVSQLAKSVLT-----PLHPDR 562 (715)
T ss_pred cchhhhcccchhhcchhhhhHHHHHHHHHHHHHHHHHHHHhhhhHhhhhHHHhhhhHHHHHHHHHHhcc-----ccCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999883 799999
Q ss_pred cCHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHHHHHhcccccccCcchhHhhhHHHHHHHHHhhcHHHHHHHHHH
Q 016039 241 FCEKDLLKVVDREYVFSYADDPCSATYPLMRKLRQVLVDHALTNNEDLKNANASIFLKIGAFEEELKTLLPKEVESARSA 320 (396)
Q Consensus 241 ~~~~dl~~~~~~~~~~~~~~d~~~~~~~l~~~l~~vl~~~~l~~~~~~~~~~~~~~~~i~~fe~el~~~L~~~~~~~R~a 320 (396)
|+++||.+++++..+|+|.||||+.+||+|||+|.++++|++..++.+++ ++|.||..|+.+++..++++++..|.+
T Consensus 563 f~~~di~avv~re~v~~~ed~~~s~t~P~~qklr~~~~~~a~a~~e~e~~---~~f~ki~af~~e~k~~lPke~e~~r~e 639 (715)
T KOG0222|consen 563 FMEPDILAVVDREYVFSYEDDPWSATYPLMQKLRHVLVDHALALPETEKN---SVFHKIGAFEAELKALLPKEVERVRAE 639 (715)
T ss_pred ccchhHHHHhhhhheeeecCChHHHhhHHHHHHHHHhccccccCCccccc---hhhhccchhHHHHhhcCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999987765533 789999999999999999999999999
Q ss_pred hhcCCCCCccccccCCcchhHHHHHhhhCccccccccccCCCccHHHHHHHHhcCcchhhHHHhhccccCCCCCCC
Q 016039 321 FESGNLEIPNRIKECRSYPLYRFVREELGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLKEWDGSPLPIC 396 (396)
Q Consensus 321 f~~g~~~~~~~i~~~~S~pLY~FVR~eLgvp~~~G~~~~T~G~~is~IyeAIr~G~l~d~ll~cl~~~~~~p~~~~ 396 (396)
|++|+.+++|||++|||||||+|||+|||+.+++||+.++||++++|||.||++||++||+||||++|||+|+|||
T Consensus 640 y~~gt~~~~nrik~crsyplyrfvr~el~t~lltge~v~spge~fdkvf~ai~~gk~idp~~ecl~ewngap~~ic 715 (715)
T KOG0222|consen 640 YENGTSAIANRIKECRSYPLYRFVREELGTELLTGEKVRSPGEEFDKVFTAISEGKLIDPLMECLKEWNGAPISIC 715 (715)
T ss_pred hccCcchhhhHHHHhhcCcHHHHHHHHhcceeccCCccCCchHHHHHHHHHHhcCccccHHHHHHHHcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=100.00 E-value=2e-109 Score=876.16 Aligned_cols=385 Identities=80% Similarity=1.194 Sum_probs=372.2
Q ss_pred ChhhhcCCccchhhhhcccCCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCC
Q 016039 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNF 80 (396)
Q Consensus 1 ~r~lL~GS~l~~~~~~~~~~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF 80 (396)
||++|+||++++...+.++.++.++++||||||||+||||||++|+|++++++|++||||+||||+|++++|.++|||||
T Consensus 296 ir~lL~GS~l~~~~~~~~~~~~~~~~vQD~YSlRc~PQvlGp~~e~l~~a~~~ie~ElNS~tDNPLI~~~~~~vlhgGNF 375 (680)
T TIGR01226 296 MEHILDGSSYAKHAEKEVEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSATKMIEREINSVNDNPLIDVERGKAHHGGNF 375 (680)
T ss_pred HHHHhCCChhhhhhhhccccCccCCcCCCcccchhhhhhhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceeeCCCC
Confidence 68999999999987766676777899999999999999999999999999999999999999999999988999999999
Q ss_pred CcchhHHHhHhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhhcCCCCccc
Q 016039 81 QGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHV 160 (396)
Q Consensus 81 ~~~~va~a~d~l~~Ala~l~~~~~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~~~La~P~s~~~ 160 (396)
||+||++|||++++||+++|+++|+|+++|+||.+|+|||+||+++++||++||||++||++|||++||++||||+|+|+
T Consensus 376 ~g~~ia~amD~l~lAla~lg~ls~~r~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~g~q~~~aal~sEl~~LA~PvS~~~ 455 (680)
T TIGR01226 376 QGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLAGGRNPSLDYGFKGAEIAMASYTSELQFLANPVTNHV 455 (680)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHhhCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCc
Confidence 99999999999999999999999999999999999999999999756899999999999999999999999999999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q 016039 161 QSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240 (396)
Q Consensus 161 ~~~~~~~eD~~S~a~~aar~~~~~v~~l~~i~A~ell~a~QA~dlR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dR 240 (396)
+|+++|||||||||++||||+.+++|++++|+|+||+++|||+|||+++++|.+.++..+.++.+++++++.++.+.+.|
T Consensus 456 ~~a~~~nEDv~Smg~~sArk~~~~ve~l~~m~A~eLl~a~QAlDLR~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 535 (680)
T TIGR01226 456 QSAEQHNQDVNSLGLISARKTAEAVDILKLMLATYLYALCQAVDLRHLEENFKSTVKNIVSEVAKKVLGMGLTGELHPKR 535 (680)
T ss_pred cccccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred cCHHHHHHHHhhhccccccCCCCCCchHHHHHHHHHHHHHHhcccccccCcchhHhhhHHHHHHHHHhhcHHHHHHHHHH
Q 016039 241 FCEKDLLKVVDREYVFSYADDPCSATYPLMRKLRQVLVDHALTNNEDLKNANASIFLKIGAFEEELKTLLPKEVESARSA 320 (396)
Q Consensus 241 ~~~~dl~~~~~~~~~~~~~~d~~~~~~~l~~~l~~vl~~~~l~~~~~~~~~~~~~~~~i~~fe~el~~~L~~~~~~~R~a 320 (396)
++++++.++|++..+|+|.|++|+.+|++|++++++|++|+|++++.+++ ..++|++|+.|+++++..++++++..|.+
T Consensus 536 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~~l~~~~~~~~-~~s~~~~~~~~~~~~~~~l~~e~~~~~~~ 614 (680)
T TIGR01226 536 FCEKDLLKVLDRETVFDYIDDPCSANYPLMQKLRQVLVEHALSNGEREKD-LLSSFQKIQVFEAELKAVLPPDVRGARAA 614 (680)
T ss_pred HHHHHHHHHhcccCCCChhhccchhhHHHHHHHHHHHHHHhhcCCccccc-hhHHHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988776655 67889999999999999999999999999
Q ss_pred hhcCCCCCccccccCCcchhHHHHHhhhCccccccccccCCCccHHHHHHHHhcCcchhhHHHhhc
Q 016039 321 FESGNLEIPNRIKECRSYPLYRFVREELGARYLTGEKAISPGEECDKVFTAICQGKIIDPLLECLK 386 (396)
Q Consensus 321 f~~g~~~~~~~i~~~~S~pLY~FVR~eLgvp~~~G~~~~T~G~~is~IyeAIr~G~l~d~ll~cl~ 386 (396)
|.+|..++||||.+|||||||+|||+|||||||+|++.+|||+||||||+|||+|+|++|||+||+
T Consensus 615 ~~~g~~~~~~~i~~c~s~~lY~fVR~~l~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~ 680 (680)
T TIGR01226 615 GDSGTSPAPNRIGECRSYPLYRFVREELGTKYLTGEKYNSPGEEISKVYEAISEGKIIDPLLKCLD 680 (680)
T ss_pred ccCCCchhhHHHhccCCcHHHHHHHHHcCCccccCCcCCCCCccHHHHHHHHHCCcchHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 4
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-71 Score=556.16 Aligned_cols=236 Identities=31% Similarity=0.422 Sum_probs=227.7
Q ss_pred ChhhhcCCccchhhhhcccCCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCC
Q 016039 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNF 80 (396)
Q Consensus 1 ~r~lL~GS~l~~~~~~~~~~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF 80 (396)
||++|.||++|+.+. +.++||||||||+|||||+++|+++++++.|++|+||+||||+|+.+.++|+|||||
T Consensus 257 lR~lLagS~~~~~~~--------~~rvQDpySlRc~PQV~GA~~d~l~~~~~~le~ElNsvtDNPlv~~~~~~ViSgGNF 328 (498)
T COG2986 257 LRALLAGSAIRRSHL--------EQRVQDPYSLRCQPQVHGACLDALRQAARVLEIELNSVTDNPLVFGDEEEVISGGNF 328 (498)
T ss_pred HHHHhccCcchhccc--------cccccCcchhhhhHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcccCCCCccccCCCc
Confidence 689999999999875 468999999999999999999999999999999999999999999998999999999
Q ss_pred CcchhHHHhHhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhhcCCCCccc
Q 016039 81 QGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHV 160 (396)
Q Consensus 81 ~~~~va~a~d~l~~Ala~l~~~~~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~~~La~P~s~~~ 160 (396)
|++||++|||+|++|++++|++|+||+.+|+||.+| |||+||+ +++|+|+|||++||++|||++|||+||+|+|.++
T Consensus 329 hg~pva~A~D~L~iAlae~a~iseRRi~~Lvnp~~s-gLP~FL~--~~~G~nsGfMI~Q~taAAL~sENk~LA~PaSvDs 405 (498)
T COG2986 329 HGEPVALAADFLAIALAELAAISERRIARLVNPALS-GLPAFLV--PKPGLNSGFMIAQYTAAALVSENKVLAHPASVDS 405 (498)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhc-cCCcccc--CCCCcccchHHHHHHHHHHHHHHHhhcCCcccCC
Confidence 999999999999999999999999999999999997 9999999 4899999999999999999999999999999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q 016039 161 QSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240 (396)
Q Consensus 161 ~~~~~~~eD~~S~a~~aar~~~~~v~~l~~i~A~ell~a~QA~dlR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dR 240 (396)
.|++.+||||+|||+.+|||+.+++||+++|+|||+|+||||+|||... .++++++++|+.+|++|+ ++++||
T Consensus 406 ~ptSanqEDhvSm~~~aa~k~~~iien~~~IlaiE~l~AaQa~dlr~~~-~~s~~t~~~~~~vR~~V~------~~~~DR 478 (498)
T COG2986 406 IPTSANQEDHVSMATHAARKLLEIIENLRTILAIELLAAAQAVDLRAPL-DLSPGTKAAYAAVREKVP------FLDDDR 478 (498)
T ss_pred ccccCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccc-ccChHHHHHHHHHHhhCC------ccccCC
Confidence 9999999999999999999999999999999999999999999999754 489999999999999999 999999
Q ss_pred cCHHHHHHHHhhhc
Q 016039 241 FCEKDLLKVVDREY 254 (396)
Q Consensus 241 ~~~~dl~~~~~~~~ 254 (396)
++.+||+++.+.+.
T Consensus 479 ~~~~Di~~~~~~l~ 492 (498)
T COG2986 479 PFAPDIEAAAALLA 492 (498)
T ss_pred ccchhHHHHHHHHh
Confidence 99999999988765
No 5
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=100.00 E-value=2e-68 Score=553.42 Aligned_cols=237 Identities=27% Similarity=0.400 Sum_probs=225.2
Q ss_pred ChhhhcCCccchhhhhcccCCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCC
Q 016039 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNF 80 (396)
Q Consensus 1 ~r~lL~GS~l~~~~~~~~~~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF 80 (396)
||.+|+||++++... ..+++||||||||+||||||++|+|++++++|++||||+||||+|++++|+|+|||||
T Consensus 254 ir~lL~gS~l~~~~~-------~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~ve~ElNS~tDNPli~~~~~~v~~gGNF 326 (506)
T TIGR01225 254 FRELLAGSEITLSHR-------DCDRVQDAYSLRCQPQVHGAVLDTLDQVAEVLGIELNSATDNPLVFADGGEVVSGGNF 326 (506)
T ss_pred HHHHhCCCccchhcc-------cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeCCCCceeeCCCC
Confidence 689999999987743 1468999999999999999999999999999999999999999999887899999999
Q ss_pred CcchhHHHhHhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhhcCCCCccc
Q 016039 81 QGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHV 160 (396)
Q Consensus 81 ~~~~va~a~d~l~~Ala~l~~~~~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~~~La~P~s~~~ 160 (396)
||+||+++||++++|++++|++++||+.+|+||.+| |||+||++ ++|+++|||++||+++||++|||+||+|+|+++
T Consensus 327 hg~~vala~D~l~iAla~la~~serr~~~L~~p~~s-gLP~fL~~--~~g~~sGf~~~q~taaal~aE~r~La~PaS~~s 403 (506)
T TIGR01225 327 HGEPVALAADFLAIAIAELGSISERRIERLLDPNLS-GLPPFLAP--DGGLNSGFMIAQYTAAALVSENKALSHPASVDS 403 (506)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhCC--CCCcccchHHHHHHHHHHHHHHHHhcCCCcCCc
Confidence 999999999999999999999999999999999997 99999984 799999999999999999999999999999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q 016039 161 QSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240 (396)
Q Consensus 161 ~~~~~~~eD~~S~a~~aar~~~~~v~~l~~i~A~ell~a~QA~dlR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dR 240 (396)
+|++++||||+|||++||||+.++++++++|+||||+++|||+|||+. .+.+++++++|+.+|+.++ ++++||
T Consensus 404 ~pts~~~ED~vSmg~~aar~~~~~v~~~~~ilAiEll~a~QAldlr~~-~~~~~~~~~~~~~vR~~vp------~~~~DR 476 (506)
T TIGR01225 404 IPTSANQEDHVSMGAHAARKLREMIENVRRVIAIELLAACQGLEFRDP-LKTSAKLEKAYQAVRSVVA------PLDGDR 476 (506)
T ss_pred ccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHhCC------CCcCCC
Confidence 999999999999999999999999999999999999999999999974 3568999999999999998 999999
Q ss_pred cCHHHHHHHHhhhc
Q 016039 241 FCEKDLLKVVDREY 254 (396)
Q Consensus 241 ~~~~dl~~~~~~~~ 254 (396)
++.+||.++.+.+.
T Consensus 477 ~~~~dI~~~~~~l~ 490 (506)
T TIGR01225 477 FFAPDIEAARDLVA 490 (506)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999888764
No 6
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members of this protein family are tyrosine 2,3-aminomutase. It is variable from member to member as to whether the (R)-beta-Tyr or (S)-beta-Tyr is the preferred product from L-Tyr. This enzyme tends to occur in secondary metabolite biosynthesis systems, as in the production of chondramides in Chondromyces crocatus.
Probab=100.00 E-value=5.4e-68 Score=550.75 Aligned_cols=243 Identities=30% Similarity=0.455 Sum_probs=225.3
Q ss_pred ChhhhcCCccchhhhhccc-----------CCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeec
Q 016039 1 MEHILDGSSYVEAAQKFHE-----------IDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDV 69 (396)
Q Consensus 1 ~r~lL~GS~l~~~~~~~~~-----------~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~ 69 (396)
||++|+||+++....+... ..+.++++||||||||+||||||++|+|++++++|++||||++|||+|+
T Consensus 253 ir~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~le~ElNs~~DNPli~- 331 (507)
T TIGR03832 253 MRALMRGSGLTVEHADLRREVQERKEAEKSVQRTEIYMQKAYSLRAIPQVLGAVRDTLYHARTKLEIELNSANDNPLFF- 331 (507)
T ss_pred HHHHhccCccchhchhhhccccccccccccccccCCcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccc-
Confidence 5889999999987543211 0122468999999999999999999999999999999999999999998
Q ss_pred CCCccccCCCCCcchhHHHhHhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHH
Q 016039 70 SRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSEL 149 (396)
Q Consensus 70 ~~~~v~~ggNF~~~~va~a~d~l~~Ala~l~~~~~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~ 149 (396)
++|+|+|||||||+||+++||+|++||+++|++|+||+.+|+||++|+|||+||++ +++|+++|||++||++++|++||
T Consensus 332 ~~~~v~sgGNFhg~~va~a~D~L~iAla~la~~serR~~~L~~p~~s~gLP~fL~~-~~~g~~sGfm~~Q~~aaaL~aE~ 410 (507)
T TIGR03832 332 EGREIFHGANFHGQPVAFAMDFVTIALTQLGVLSERRLNRLLNRHLSYGLPEFLVA-GDPGLHSGFAGAQYPATALVAEN 410 (507)
T ss_pred CCCccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhCC-CCCCCCccchHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999998899999986 48999999999999999999999
Q ss_pred hhhcCCCCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHh
Q 016039 150 QFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLT 229 (396)
Q Consensus 150 ~~La~P~s~~~~~~~~~~eD~~S~a~~aar~~~~~v~~l~~i~A~ell~a~QA~dlR~~~~~~~~~~~~~~~~~~~~~~~ 229 (396)
|+| +|+|++++|++++||||+|||+.||||+.++++++++|+|||++++|||+|||+...+++++++++|+.+|+.++
T Consensus 411 r~L-~PaS~~s~pts~~~ED~vSmg~~aark~~~~v~~~~~ilAiEll~aaQAldlr~~~~~~~~~~~~~~~~vr~~vp- 488 (507)
T TIGR03832 411 RTI-GPASTQSVPSNGDNQDVVSMGLIAARNARRVLSNNNKILAVELLAAAQAVDLAGRFDGLSPAARATYEAVRRLVP- 488 (507)
T ss_pred HHh-CCCccCCccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHhCC-
Confidence 999 999999999999999999999999999999999999999999999999999997555789999999999999998
Q ss_pred cCCCCCCCCCccCHHHHHHHHhh
Q 016039 230 MGVNGELHPSRFCEKDLLKVVDR 252 (396)
Q Consensus 230 ~~~~~~l~~dR~~~~dl~~~~~~ 252 (396)
+++.||++.+||.++.+.
T Consensus 489 -----~~~~DR~l~~di~~~~~~ 506 (507)
T TIGR03832 489 -----TLGVDRYMADDIELVADA 506 (507)
T ss_pred -----CCcCCCCcHHHHHHHHHh
Confidence 999999999999998764
No 7
>PRK09367 histidine ammonia-lyase; Provisional
Probab=100.00 E-value=5.3e-67 Score=542.99 Aligned_cols=236 Identities=29% Similarity=0.434 Sum_probs=223.9
Q ss_pred ChhhhcCCccchhhhhcccCCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCC
Q 016039 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNF 80 (396)
Q Consensus 1 ~r~lL~GS~l~~~~~~~~~~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF 80 (396)
||++|+||+++...++ .+++||||||||+||||||++|++++++++|++||||++|||+|+++ |+++|||||
T Consensus 257 lr~lL~gS~l~~~~~~-------~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~v~~ElNS~~DNPlv~~~-~~v~~gGNF 328 (500)
T PRK09367 257 LRALLEGSSIITSSHD-------CERVQDPYSLRCQPQVHGACLDQLRYAAEVLEIEANAVTDNPLVFPD-GDVISGGNF 328 (500)
T ss_pred HHHHHcCCcccccccC-------CCcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcccCC-CCeeeCCCC
Confidence 5899999999877541 46899999999999999999999999999999999999999999974 789999999
Q ss_pred CcchhHHHhHhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhhcCCCCccc
Q 016039 81 QGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHV 160 (396)
Q Consensus 81 ~~~~va~a~d~l~~Ala~l~~~~~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~~~La~P~s~~~ 160 (396)
||+||+++||+|++||+++|++++||+.+|+||.+| |||+||++ +|+.++|||++||+++||++|||+||+|+|.++
T Consensus 329 ~g~~lala~D~L~iAla~la~~serR~~~L~~p~~s-gLp~fL~~--~~g~~~G~~~~q~taaal~ae~r~la~PaS~~s 405 (500)
T PRK09367 329 HGEPVAFAADFLAIAVAEIGSISERRIARLVDPALS-GLPPFLVP--DPGLNSGFMIAQVTAAALVSENKTLAHPASVDS 405 (500)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhCC--CCCcccchHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 999999999999999999999999999999999997 99999984 799999999999999999999999999999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q 016039 161 QSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVLTMGVNGELHPSR 240 (396)
Q Consensus 161 ~~~~~~~eD~~S~a~~aar~~~~~v~~l~~i~A~ell~a~QA~dlR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~dR 240 (396)
+|++++||||+|||+.||||+.++++++++|+|||++++|||+|||+. .+++++++++|+.+|+.++ ++++||
T Consensus 406 ~pts~~~ED~~Smg~~aark~~~~~~~~~~ilAiell~a~QA~dlr~~-~~~~~~~~~~~~~vr~~vp------~~~~Dr 478 (500)
T PRK09367 406 IPTSANQEDHVSMGTHAARKLREMAENLRRVLAIELLAAAQGLDFRAP-LKTSPALEAAYALLREKVP------FLDEDR 478 (500)
T ss_pred cCccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCChHHHHHHHHHHhhCC------CCccCC
Confidence 999999999999999999999999999999999999999999999964 4578999999999999998 999999
Q ss_pred cCHHHHHHHHhhhc
Q 016039 241 FCEKDLLKVVDREY 254 (396)
Q Consensus 241 ~~~~dl~~~~~~~~ 254 (396)
++.+||.++.+.+.
T Consensus 479 ~l~~di~~~~~~l~ 492 (500)
T PRK09367 479 YFAPDIEAAAELVA 492 (500)
T ss_pred CchHHHHHHHHHHH
Confidence 99999999988764
No 8
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4.3.1.24 from EC) and the mechanistically related protein histidine ammonia lyase (HAL; 4.3.1.3 from EC). Both contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised []. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and Hal share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [].; GO: 0016841 ammonia-lyase activity, 0009058 biosynthetic process; PDB: 2RJR_A 2RJS_A 2OHY_B 3KDZ_B 2QVE_A 3KDY_A 2NYF_A 2YII_B 1Y2M_B 1T6P_B ....
Probab=100.00 E-value=3.9e-63 Score=512.36 Aligned_cols=216 Identities=32% Similarity=0.483 Sum_probs=194.4
Q ss_pred ChhhhcCCccchhhhhcccCCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCC
Q 016039 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNF 80 (396)
Q Consensus 1 ~r~lL~GS~l~~~~~~~~~~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF 80 (396)
||++|+||++|+... ++||||||||+||||||++|+|++++++|++||||++|||+|++++|+++|||||
T Consensus 254 lr~lL~gS~l~~~~~----------~vQDpySlRc~PQv~G~~~d~l~~~~~~v~~ElNs~~DNPlv~~~~~~v~~ggnF 323 (473)
T PF00221_consen 254 LRELLKGSYLWSSHD----------RVQDPYSLRCAPQVHGAARDALAHAREVVEIELNSATDNPLVFPDDGRVLSGGNF 323 (473)
T ss_dssp HHHHHTT-SSSBHHH----------CSSS-HHHHTHHHHHHHHHHHHHHHHHHHHHHHTS--SSSEEEGGGTEEE-S-TT
T ss_pred HHHhhCCCcCccccc----------ccCCcceeeehHHHhHHHHHHHHHHHHHHHHHHcCCCCCceEecCCCeeeecCCc
Confidence 589999999998854 6999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHhHhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhhcCCCCccc
Q 016039 81 QGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHV 160 (396)
Q Consensus 81 ~~~~va~a~d~l~~Ala~l~~~~~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~~~La~P~s~~~ 160 (396)
|+++|+++||++++|++++|++++||+.+|+||.+|+|||+||++ +|+.++|||++||++++|++|||+||+|+|.++
T Consensus 324 ~~~~va~a~D~l~~Ala~l~~~s~rR~~~L~~p~~~~gLP~fL~~--~~g~~~G~~~~q~~aaaL~aE~r~La~P~s~~s 401 (473)
T PF00221_consen 324 HGQPVALAMDALAIALAHLANLSERRIARLVNPAFNNGLPPFLAA--EPGLNSGFMILQYTAAALVAENRHLANPASIDS 401 (473)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTS-GGGSS--SCTTB-TTHHHHHHHHHHHHHHHHHTS-SCGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcCCCChhhcC--CCCCCcccchHhHHHHHHHHHHHhhccCccccc
Confidence 999999999999999999999999999999999998799999995 789999999999999999999999999999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH
Q 016039 161 QSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLRHLEENLKSTVKNTISQVAKKVL 228 (396)
Q Consensus 161 ~~~~~~~eD~~S~a~~aar~~~~~v~~l~~i~A~ell~a~QA~dlR~~~~~~~~~~~~~~~~~~~~~~ 228 (396)
+|++++||||+|||+.||+|+.+++|++++|+|||++++|||+|||.....++++++++|+.+|+.++
T Consensus 402 ~pts~~~ED~~Sm~~~aa~k~~~~v~~~~~ilAiell~a~QA~dlr~~~~~~~~~~~~~~~~~R~~vp 469 (473)
T PF00221_consen 402 IPTSGGQEDHVSMGPLAARKLRRIVENLRYILAIELLAAAQALDLRGPERSLGPGTRALYDAVRSVVP 469 (473)
T ss_dssp --BTTTTBSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999997666779999999999999998
No 9
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=100.00 E-value=1.7e-62 Score=503.40 Aligned_cols=196 Identities=38% Similarity=0.561 Sum_probs=188.4
Q ss_pred ChhhhcCCccchhhhhcccCCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCC
Q 016039 1 MEHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNF 80 (396)
Q Consensus 1 ~r~lL~GS~l~~~~~~~~~~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF 80 (396)
||.+|+||++|+... ..+++||||||||+||||||++|+|++++++|++||||++|||+|++++++++|||||
T Consensus 249 lr~lL~gs~l~~~~~-------~~~~lQDpySlRc~PQv~G~~~d~l~~~~~~v~~ElNs~~DNPli~~~~~~v~~ggNF 321 (444)
T cd00332 249 LRALLAGSSLWESHD-------GERRVQDPYSLRCAPQVHGAARDALRYAARVLEIELNSVTDNPLVDPDNGEVLSGGNF 321 (444)
T ss_pred HHHHhCCCccccccC-------CCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeCCCCceeeCCCc
Confidence 689999999995432 2578999999999999999999999999999999999999999999988899999999
Q ss_pred CcchhHHHhHhHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhhcCCCCccc
Q 016039 81 QGTPIGVSMDNSRLAIASIGKLMFAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHV 160 (396)
Q Consensus 81 ~~~~va~a~d~l~~Ala~l~~~~~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~~~La~P~s~~~ 160 (396)
|++||+++||+|++|++++|++++||+.+|+||.+| |||+||++ +|+.++|||++||++++|++|||+||+|+|.++
T Consensus 322 ~~~~va~a~D~l~iala~la~~s~rr~~~L~~p~~~-gLp~fL~~--~~g~~~Gf~~~q~~aaal~ae~r~la~P~s~~s 398 (444)
T cd00332 322 HGQPVALAMDFLAIALAELANLSERRIARLVNPALS-GLPAFLVA--DPGLNSGFMIAQYTAAALVAENKALAHPASVDS 398 (444)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhCC--CCCcccchHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 999999999999999999999999999999999996 99999984 799999999999999999999999999999999
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016039 161 QSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLIALCQAIDLR 206 (396)
Q Consensus 161 ~~~~~~~eD~~S~a~~aar~~~~~v~~l~~i~A~ell~a~QA~dlR 206 (396)
+|++++||||+|||+.||||+.+++|++++|+||||+++|||+|||
T Consensus 399 ~~~s~~~ED~~Sm~~~aa~~~~~~v~~~~~ilAiell~a~QA~dlr 444 (444)
T cd00332 399 IPTSAGQEDHVSMGLIAARKLREIVDNLRRILAIELLAAAQALDLR 444 (444)
T ss_pred ccccCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999997
No 10
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.35 E-value=1.3e-12 Score=122.90 Aligned_cols=132 Identities=23% Similarity=0.180 Sum_probs=120.7
Q ss_pred CCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCCCcchhHHHhHhHHHHHHHHHHHH
Q 016039 24 QKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNSRLAIASIGKLM 103 (396)
Q Consensus 24 ~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF~~~~va~a~d~l~~Ala~l~~~~ 103 (396)
..++||+|+|||.||++|+.+|.|..+ +++..++.++++++++++++
T Consensus 94 A~p~t~g~~~~~~~~~l~~~~~rL~~~---------------------------------~~~~~~~~l~~~~~~l~r~a 140 (231)
T cd01594 94 AQPVTLGYELRAWAQVLGRDLERLEEA---------------------------------AVAEALDALALAAAHLSKIA 140 (231)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCCCCCCCCCCccccchHHHHHHHHHHHHHhhhcCCCCccccccc-----ccccccccchHHHH
Q 016039 104 FAQFSELVNDFYSNGLPSNLSGGRNPCLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAE-----QHNQDVNSLGLISA 178 (396)
Q Consensus 104 ~~r~~~L~~p~~~~gLP~~L~~~~~~~~~~g~~~~q~~~aal~aE~~~La~P~s~~~~~~~-----~~~eD~~S~a~~aa 178 (396)
++++..+.+|..+ ..|+++.. .+|.+.+++..+..++.++.++..+++|.+..+.++. +++||.++++...+
T Consensus 141 ~d~~~~~~~~~~~-~~~~~~~~--~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 217 (231)
T cd01594 141 EDLRLLLSGEFGE-LGEPFLPG--QPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMREILA 217 (231)
T ss_pred HHHHHHcCCCCCe-eeCccCCC--CCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHhcccccccccCHHHHHHHH
Confidence 9999999999875 56777752 6778899999999999999999999999997776666 79999999999999
Q ss_pred HHHHHHHHHHHHH
Q 016039 179 RKTAEAVDILKLM 191 (396)
Q Consensus 179 r~~~~~v~~l~~i 191 (396)
+.+.++.+.+..+
T Consensus 218 ~~~~~~~~~l~~~ 230 (231)
T cd01594 218 DSLLLLIDALRLL 230 (231)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 11
>PLN02972 Histidyl-tRNA synthetase
Probab=77.10 E-value=3.1 Score=46.53 Aligned_cols=76 Identities=25% Similarity=0.323 Sum_probs=54.8
Q ss_pred hhhhcCCccchhhhhcccCCCCCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHhhcCCCCCeeecCCCccccCCCCC
Q 016039 2 EHILDGSSYVEAAQKFHEIDPLQKPKQDRYALRTSPQWLGPQAEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQ 81 (396)
Q Consensus 2 r~lL~GS~l~~~~~~~~~~~~~~~~~QD~ySlR~~PQv~G~~~d~l~~a~~~i~~EiNS~~DNPli~~~~~~v~~ggNF~ 81 (396)
.-||.||.++... +.-+|--+|.++|-.+++++.....+.+|+||... .. .+..+.+|
T Consensus 85 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~--- 142 (763)
T PLN02972 85 KVLLNGSKLVGKA--------------QAEVFSKIPKINGIFREAVKAVHAVVRIELNSPVK----LG-KRDAIQTG--- 142 (763)
T ss_pred eeeecccchhhhh--------------HHHHHhcCcccchHHHHHHHHHHHHHHHHhcCccc----cc-ccCcchhh---
Confidence 4578888887663 35577889999999999999999999999998532 11 11222211
Q ss_pred cchhHHHhHhHHHHHHHHHHHHHHHH
Q 016039 82 GTPIGVSMDNSRLAIASIGKLMFAQF 107 (396)
Q Consensus 82 ~~~va~a~d~l~~Ala~l~~~~~~r~ 107 (396)
+.+..|+..++++|..|-
T Consensus 143 --------~~~~~~~~~~~~~~~~~~ 160 (763)
T PLN02972 143 --------EGLARAVQALGKLSVARA 160 (763)
T ss_pred --------HHHHHHHHHHHHHHHHHH
Confidence 227778888888888774
No 12
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=53.89 E-value=7.1 Score=37.84 Aligned_cols=92 Identities=27% Similarity=0.426 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcccccccCcchhHhhhHHHHHHHHHhhcHHHHHHHHHH-hhcCCCCCccccccCCcchhHHHHHhhh
Q 016039 270 MRKLRQVLVDHALTNNEDLKNANASIFLKIGAFEEELKTLLPKEVESARSA-FESGNLEIPNRIKECRSYPLYRFVREEL 348 (396)
Q Consensus 270 ~~~l~~vl~~~~l~~~~~~~~~~~~~~~~i~~fe~el~~~L~~~~~~~R~a-f~~g~~~~~~~i~~~~S~pLY~FVR~eL 348 (396)
.+.-....+++.++........-+|+--.+.+-..|++..|+++-. .|.+ .++|+|+ -||.
T Consensus 59 Aq~~a~~wl~~W~~g~~~~d~~~PSVAFGlScA~aEl~~~Lp~~~n-Y~~APLC~GDPD-----------eL~~------ 120 (321)
T COG1441 59 AQEQALAWLNNWLAGHDPLDPQMPSVAFGLSCALAELKGTLPEAAN-YRVAPLCTGDPD-----------ELYL------ 120 (321)
T ss_pred HHHHHHHHHHHHHccCCcccccCchhHHHHHHHHHHHhhhchhhcC-cccccCcCCCHH-----------HHHH------
Confidence 3333334455555432222233445555677777788877765431 1222 2233221 1121
Q ss_pred CccccccccccCCCccHHHH----HHHHhcCcchhhHHHhhc
Q 016039 349 GARYLTGEKAISPGEECDKV----FTAICQGKIIDPLLECLK 386 (396)
Q Consensus 349 gvp~~~G~~~~T~G~~is~I----yeAIr~G~l~d~ll~cl~ 386 (396)
++ ..-|||.|.|| |||+|+|-+.+.++|.+-
T Consensus 121 --~L-----~~mpGeKvAKvKVGlYEa~RDGmivnllLEaiP 155 (321)
T COG1441 121 --KL-----ADMPGEKVAKVKVGLYEAVRDGMIVNLLLEAIP 155 (321)
T ss_pred --HH-----hcCCcceeeeeeeeeeeccccchHHHHHHHhCc
Confidence 00 23567777764 999999999999999864
No 13
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=46.74 E-value=4.7e+02 Score=29.41 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhcccccccCcchhHhhhHHHHHHHHHhhcHHHHHHHHHHhhcC
Q 016039 269 LMRKLRQVLVDHALTNNEDLKNANASIFLKIGAFEEELKTLLPKEVESARSAFESG 324 (396)
Q Consensus 269 l~~~l~~vl~~~~l~~~~~~~~~~~~~~~~i~~fe~el~~~L~~~~~~~R~af~~g 324 (396)
....+.+.|++++....-.....+.+.++.+.+|+....+.+...+.++|++|+.+
T Consensus 560 ~~~~~~~~l~~~l~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~~l~~e~~~~~~~~ 615 (680)
T TIGR01226 560 ANYPLMQKLRQVLVEHALSNGEREKDLLSSFQKIQVFEAELKAVLPPDVRGARAAG 615 (680)
T ss_pred hhHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHhCHHHHHHHHHhc
Confidence 35555888888754322212122233588899999999999999999999999986
No 14
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=27.01 E-value=13 Score=34.20 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=27.4
Q ss_pred CcchhHHHHHhhhCcc--cccc------------ccccCCCccHHHHHHHHhcCc
Q 016039 336 RSYPLYRFVREELGAR--YLTG------------EKAISPGEECDKVFTAICQGK 376 (396)
Q Consensus 336 ~S~pLY~FVR~eLgvp--~~~G------------~~~~T~G~~is~IyeAIr~G~ 376 (396)
--++-|+|||+|||+= |+.. +.-.-+|---|.|-.++|..|
T Consensus 26 ~d~kTfrFvReeLGlLVDFmaEl~K~~Gh~lIGiRGmPRVGKTEsivAasVcAnK 80 (192)
T PF11868_consen 26 DDKKTFRFVREELGLLVDFMAELFKEEGHKLIGIRGMPRVGKTESIVAASVCANK 80 (192)
T ss_pred CCCceeEEEhhHhccHHHHHHHHHHhcCceEEeecCCCccCchhHHHHHhhhcCc
Confidence 3456799999999973 3311 122456777788888877766
No 15
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=24.07 E-value=1.8e+02 Score=26.67 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHhhcCCCCCccccccCCcchhHHHHHhhhCccccccccccCCCccHHHH----HHHHh
Q 016039 298 KIGAFEEELKTLLPKEVESARSAFESGNLEIPNRIKECRSYPLYRFVREELGARYLTGEKAISPGEECDKV----FTAIC 373 (396)
Q Consensus 298 ~i~~fe~el~~~L~~~~~~~R~af~~g~~~~~~~i~~~~S~pLY~FVR~eLgvp~~~G~~~~T~G~~is~I----yeAIr 373 (396)
.+..|-+.++.--..-|+-.|++|-..-.-+|-++ +-||++||.-.|=|+.--+.+ |+.+++| .+.+|
T Consensus 47 eL~~Fl~gV~~G~eSRy~iQ~ksY~r~v~kvpV~V-----~DlYQ~vRdR~~~~lIvtdPk---G~~is~vk~~L~~~~r 118 (173)
T PF14419_consen 47 ELMEFLRGVREGQESRYQIQRKSYGREVRKVPVYV-----QDLYQVVRDRKGEPLIVTDPK---GDPISEVKDKLAEDLR 118 (173)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCCeeeEeeeeH-----HHHHHHHHhcCCCeEEEECCC---CCcHHHHHHHHHHHHh
Confidence 36677777777777778888898886444566554 579999999555555432223 7777654 66777
Q ss_pred cCcc
Q 016039 374 QGKI 377 (396)
Q Consensus 374 ~G~l 377 (396)
.++=
T Consensus 119 ~~~e 122 (173)
T PF14419_consen 119 YAKE 122 (173)
T ss_pred hCcE
Confidence 6643
No 16
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=20.22 E-value=87 Score=26.38 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=22.6
Q ss_pred chhHHHHHhhhCccccccccccCCCccHHH
Q 016039 338 YPLYRFVREELGARYLTGEKAISPGEECDK 367 (396)
Q Consensus 338 ~pLY~FVR~eLgvp~~~G~~~~T~G~~is~ 367 (396)
..+++|||+++|+++..+.+..|+.+.+..
T Consensus 6 ~~I~~fi~~~~~~~~~~~~~~it~dt~L~~ 35 (111)
T PF07377_consen 6 QEIIEFIREENGPYLFFKKKPITPDTDLQE 35 (111)
T ss_pred HHHHHHHHHHcCcccccCcccCCCCCcHHH
Confidence 467999999999987776666666665543
Done!