Query 016040
Match_columns 396
No_of_seqs 189 out of 2188
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:14:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 5.6E-47 1.2E-51 373.8 35.0 324 72-396 23-356 (557)
2 PRK15049 L-asparagine permease 100.0 6.1E-45 1.3E-49 356.1 34.2 309 72-396 23-346 (499)
3 PRK10249 phenylalanine transpo 100.0 4.5E-44 9.8E-49 347.5 33.2 308 71-396 15-335 (458)
4 PRK11387 S-methylmethionine tr 100.0 4E-44 8.8E-49 349.5 32.7 306 73-396 10-332 (471)
5 PRK10238 aromatic amino acid t 100.0 2.4E-43 5.2E-48 342.2 33.8 308 71-396 6-326 (456)
6 PRK10746 putative transport pr 100.0 3.5E-43 7.7E-48 341.0 33.0 307 72-396 5-326 (461)
7 TIGR01773 GABAperm gamma-amino 100.0 4.7E-43 1E-47 340.9 32.3 307 72-396 7-328 (452)
8 PRK10644 arginine:agmatin anti 100.0 2.2E-42 4.8E-47 335.3 32.7 309 73-396 4-317 (445)
9 PRK10655 potE putrescine trans 100.0 1.9E-42 4E-47 335.5 31.9 307 75-396 4-315 (438)
10 PRK10435 cadB lysine/cadaverin 100.0 3.6E-42 7.8E-47 332.5 32.6 306 75-396 3-313 (435)
11 PRK10580 proY putative proline 100.0 9.3E-42 2E-46 331.9 33.2 308 71-396 3-325 (457)
12 PRK11049 D-alanine/D-serine/gl 100.0 1.3E-41 2.7E-46 331.6 33.1 306 73-396 16-337 (469)
13 COG0833 LysP Amino acid transp 100.0 9.8E-43 2.1E-47 325.2 24.1 306 74-396 41-368 (541)
14 KOG1286 Amino acid transporter 100.0 2E-43 4.3E-48 341.5 20.0 321 73-396 26-363 (554)
15 PRK11357 frlA putative fructos 100.0 1.5E-41 3.2E-46 329.7 33.2 310 72-396 3-323 (445)
16 TIGR00909 2A0306 amino acid tr 100.0 1.7E-41 3.8E-46 328.3 33.5 318 75-396 1-321 (429)
17 PRK10836 lysine transporter; P 100.0 1.2E-41 2.6E-46 333.4 32.6 307 72-396 10-339 (489)
18 PRK11021 putative transporter; 100.0 3.7E-41 8E-46 323.6 33.7 300 79-396 1-303 (410)
19 TIGR00905 2A0302 transporter, 100.0 4.9E-41 1.1E-45 328.0 32.4 309 75-396 5-325 (473)
20 TIGR00911 2A0308 L-type amino 100.0 9.8E-41 2.1E-45 328.4 32.8 312 71-396 36-360 (501)
21 COG1113 AnsP Gamma-aminobutyra 100.0 1.2E-41 2.6E-46 311.6 23.7 308 71-396 7-329 (462)
22 TIGR00908 2A0305 ethanolamine 100.0 1.8E-40 3.8E-45 322.1 32.8 306 72-396 2-319 (442)
23 TIGR00913 2A0310 amino acid pe 100.0 2.7E-40 5.9E-45 323.9 32.5 303 76-396 1-332 (478)
24 TIGR03428 ureacarb_perm permea 100.0 3.7E-40 8.1E-45 322.0 32.4 320 70-396 6-342 (475)
25 PRK10197 gamma-aminobutyrate t 100.0 2.8E-40 6E-45 319.9 30.8 292 87-396 2-308 (446)
26 KOG1289 Amino acid transporter 100.0 6.4E-41 1.4E-45 312.2 23.6 326 60-396 33-384 (550)
27 KOG1287 Amino acid transporter 100.0 3.2E-40 7E-45 307.3 24.1 311 71-395 6-328 (479)
28 TIGR03810 arg_ornith_anti argi 100.0 3.4E-39 7.3E-44 314.7 32.1 307 77-396 1-321 (468)
29 TIGR00907 2A0304 amino acid pe 100.0 7E-38 1.5E-42 307.0 30.2 319 70-396 5-349 (482)
30 PF13520 AA_permease_2: Amino 100.0 1.1E-37 2.5E-42 301.7 28.3 302 79-396 1-315 (426)
31 TIGR00930 2a30 K-Cl cotranspor 100.0 2.2E-36 4.8E-41 310.9 31.6 316 73-396 72-431 (953)
32 COG0531 PotE Amino acid transp 100.0 7.9E-36 1.7E-40 292.3 32.3 315 71-396 6-329 (466)
33 PF00324 AA_permease: Amino ac 100.0 2.9E-37 6.2E-42 302.4 8.0 298 84-394 2-330 (478)
34 TIGR03813 put_Glu_GABA_T putat 100.0 1.2E-33 2.7E-38 276.2 31.1 308 77-396 1-323 (474)
35 TIGR00910 2A0307_GadC glutamat 100.0 5.9E-33 1.3E-37 272.0 30.2 306 76-396 3-325 (507)
36 PRK15238 inner membrane transp 100.0 1.9E-31 4.2E-36 261.9 31.8 314 75-396 5-359 (496)
37 TIGR00837 araaP aromatic amino 99.9 1.5E-24 3.3E-29 206.7 25.7 285 86-383 4-298 (381)
38 TIGR00912 2A0309 spore germina 99.9 1.3E-23 2.7E-28 198.7 29.5 290 77-385 1-297 (359)
39 PHA02764 hypothetical protein; 99.8 1.7E-19 3.7E-24 156.8 20.7 271 71-396 6-279 (399)
40 TIGR00814 stp serine transport 99.8 5.3E-18 1.2E-22 160.2 28.3 287 82-384 6-311 (397)
41 PF03845 Spore_permease: Spore 99.8 4E-17 8.8E-22 151.7 30.7 288 78-385 1-293 (320)
42 PF03222 Trp_Tyr_perm: Tryptop 99.8 2.8E-16 6E-21 148.8 30.2 294 77-384 1-305 (394)
43 KOG1288 Amino acid transporter 99.8 9.8E-19 2.1E-23 165.8 13.0 306 78-391 66-409 (945)
44 COG0814 SdaC Amino acid permea 99.7 5.7E-15 1.2E-19 140.9 28.4 290 74-376 4-307 (415)
45 TIGR00796 livcs branched-chain 99.7 6.4E-15 1.4E-19 137.5 27.7 275 88-383 4-299 (378)
46 PRK15132 tyrosine transporter 99.7 1.7E-14 3.6E-19 136.2 27.8 291 80-385 4-303 (403)
47 PRK10483 tryptophan permease; 99.7 1.7E-14 3.7E-19 135.5 27.1 297 74-385 6-314 (414)
48 PRK09664 tryptophan permease T 99.7 2.8E-14 6.2E-19 133.9 27.7 291 80-384 10-314 (415)
49 PRK13629 threonine/serine tran 99.7 4.2E-14 9.1E-19 132.9 28.5 289 83-384 23-346 (443)
50 KOG2083 Na+/K+ symporter [Inor 99.7 5E-16 1.1E-20 146.3 13.0 300 76-391 27-353 (643)
51 KOG2082 K+/Cl- cotransporter K 99.7 4.6E-16 1E-20 148.9 12.7 314 76-395 111-539 (1075)
52 PF01235 Na_Ala_symp: Sodium:a 99.5 3.7E-11 8.1E-16 112.6 25.5 292 74-384 14-338 (416)
53 KOG1303 Amino acid transporter 99.4 6.1E-11 1.3E-15 112.7 20.7 283 75-375 34-326 (437)
54 TIGR00835 agcS amino acid carr 99.4 8.8E-10 1.9E-14 104.0 27.7 290 77-387 45-368 (425)
55 COG1115 AlsT Na+/alanine sympo 99.4 1.2E-09 2.6E-14 101.4 27.2 295 74-387 58-385 (452)
56 PLN03074 auxin influx permease 99.3 1.2E-09 2.6E-14 106.1 22.7 239 76-333 43-294 (473)
57 KOG1304 Amino acid transporter 99.2 2.1E-09 4.6E-14 100.8 20.5 241 76-334 44-306 (449)
58 PTZ00206 amino acid transporte 99.2 9.1E-09 2E-13 100.3 25.3 245 80-333 61-319 (467)
59 COG3949 Uncharacterized membra 99.0 4E-07 8.7E-12 81.3 24.3 270 85-380 9-285 (349)
60 PRK11375 allantoin permease; P 98.8 7.9E-06 1.7E-10 80.0 28.3 299 74-377 22-334 (484)
61 PRK09442 panF sodium/panthothe 98.6 0.00019 4E-09 70.8 31.7 282 76-379 40-346 (483)
62 PF01490 Aa_trans: Transmembra 98.6 1.6E-09 3.4E-14 104.6 -4.2 244 77-333 1-256 (409)
63 TIGR00813 sss transporter, SSS 98.6 0.00013 2.8E-09 70.3 29.4 284 76-380 2-322 (407)
64 TIGR02119 panF sodium/pantothe 98.6 0.00028 6.1E-09 69.4 31.1 285 76-380 39-346 (471)
65 TIGR02121 Na_Pro_sym sodium/pr 98.4 0.00088 1.9E-08 66.1 30.7 284 76-380 35-346 (487)
66 PF05525 Branch_AA_trans: Bran 98.4 0.00027 5.9E-09 67.2 25.3 277 87-385 11-307 (427)
67 PF00474 SSF: Sodium:solute sy 98.4 2.5E-05 5.4E-10 75.3 18.9 284 76-380 5-320 (406)
68 COG1457 CodB Purine-cytosine p 98.4 0.00018 3.9E-09 68.4 23.3 169 113-301 54-224 (442)
69 PRK11017 codB cytosine permeas 98.4 0.0011 2.5E-08 63.6 28.4 218 76-317 8-229 (404)
70 TIGR00800 ncs1 NCS1 nucleoside 98.3 0.0019 4.1E-08 62.9 30.1 243 74-325 9-261 (442)
71 COG0591 PutP Na+/proline sympo 98.3 0.0026 5.7E-08 62.7 30.0 282 76-380 37-353 (493)
72 PRK15419 proline:sodium sympor 98.3 0.0047 1E-07 61.2 31.1 283 76-380 39-353 (502)
73 COG1953 FUI1 Cytosine/uracil/t 98.2 0.0018 3.8E-08 62.0 25.8 290 74-371 36-341 (497)
74 TIGR02711 symport_actP cation/ 98.2 0.0045 9.8E-08 61.9 29.6 280 76-377 66-379 (549)
75 PRK10484 putative transporter; 98.2 0.0066 1.4E-07 60.5 30.7 291 76-380 37-355 (523)
76 PRK12488 acetate permease; Pro 98.2 0.0041 8.8E-08 62.3 29.2 154 76-250 66-222 (549)
77 COG0733 Na+-dependent transpor 98.2 0.0025 5.4E-08 60.2 24.9 289 81-373 11-324 (439)
78 PRK09395 actP acetate permease 98.1 0.009 2E-07 59.9 30.7 153 76-249 68-223 (551)
79 PF01566 Nramp: Natural resist 98.1 0.002 4.2E-08 61.0 24.7 244 123-385 21-286 (358)
80 PRK15433 branched-chain amino 98.1 0.0022 4.8E-08 61.1 24.3 276 86-384 15-310 (439)
81 TIGR03648 Na_symport_lg probab 98.0 0.011 2.3E-07 59.4 28.3 148 76-246 31-183 (552)
82 PRK00701 manganese transport p 98.0 0.017 3.7E-07 56.0 27.6 75 110-188 64-140 (439)
83 TIGR02358 thia_cytX probable h 97.9 0.021 4.5E-07 54.6 27.9 202 112-331 30-232 (386)
84 PF02133 Transp_cyt_pur: Perme 97.9 0.0013 2.7E-08 64.2 18.1 241 75-321 5-251 (440)
85 PF02028 BCCT: BCCT family tra 97.8 0.026 5.7E-07 55.0 26.6 302 75-391 71-429 (485)
86 COG1114 BrnQ Branched-chain am 97.8 0.035 7.5E-07 52.0 24.6 279 82-382 8-306 (431)
87 KOG1305 Amino acid transporter 97.7 0.00028 6E-09 67.2 10.5 250 76-334 3-258 (411)
88 COG1914 MntH Mn2+ and Fe2+ tra 97.3 0.17 3.7E-06 48.4 27.1 116 122-257 55-172 (416)
89 COG1292 BetT Choline-glycine b 96.9 0.34 7.3E-06 47.2 21.5 26 75-100 84-109 (537)
90 PRK09950 putative transporter; 96.9 0.29 6.4E-06 48.0 21.3 24 76-99 81-104 (506)
91 KOG4303 Vesicular inhibitory a 96.8 0.00097 2.1E-08 60.2 3.2 239 75-331 113-361 (524)
92 PLN00151 potassium transporter 96.7 0.14 3.1E-06 52.2 17.7 173 209-391 274-455 (852)
93 KOG2466 Uridine permease/thiam 96.5 0.24 5.3E-06 47.3 16.7 179 75-257 52-234 (572)
94 PRK03356 L-carnitine/gamma-but 96.1 1.5 3.4E-05 43.1 22.5 24 76-99 83-106 (504)
95 PRK09928 choline transport pro 96.1 2 4.2E-05 43.7 23.8 24 76-99 90-113 (679)
96 COG4145 PanF Na+/panthothenate 95.6 1.9 4.1E-05 40.1 26.6 276 76-376 38-341 (473)
97 TIGR01197 nramp NRAMP (natural 95.6 2.2 4.9E-05 40.7 27.9 52 342-394 283-334 (390)
98 TIGR00842 bcct choline/carniti 95.4 2.8 6.1E-05 40.7 24.1 24 76-99 34-57 (453)
99 COG4147 DhlC Predicted symport 95.4 2.7 5.9E-05 40.4 22.3 192 113-325 79-290 (529)
100 KOG3659 Sodium-neurotransmitte 95.3 2.8 6.1E-05 41.4 18.7 121 209-330 254-382 (629)
101 PLN00149 potassium transporter 95.0 5 0.00011 41.4 20.9 175 210-391 199-382 (779)
102 PF02554 CstA: Carbon starvati 95.0 3.2 6.9E-05 38.8 18.4 99 79-180 52-152 (376)
103 PF00209 SNF: Sodium:neurotran 94.5 5.8 0.00013 39.7 23.5 103 220-325 191-303 (523)
104 PLN00150 potassium ion transpo 94.1 4.6 0.0001 41.6 17.5 172 209-391 214-395 (779)
105 PF02705 K_trans: K+ potassium 93.9 4.7 0.0001 39.9 16.8 168 209-391 132-312 (534)
106 PLN00148 potassium transporter 92.4 15 0.00033 38.0 19.2 172 209-391 197-378 (785)
107 PRK10745 trkD potassium transp 91.6 16 0.00035 36.8 17.1 171 209-391 143-323 (622)
108 TIGR00794 kup potassium uptake 89.5 7.9 0.00017 39.5 13.0 172 209-391 168-349 (688)
109 KOG2349 Na+:iodide/myo-inosito 88.7 4.5 9.8E-05 40.3 10.5 284 76-382 44-362 (585)
110 COG1966 CstA Carbon starvation 87.5 31 0.00068 34.1 17.2 103 79-182 52-154 (575)
111 KOG1289 Amino acid transporter 84.7 44 0.00095 33.1 15.2 76 113-188 293-371 (550)
112 PRK15015 carbon starvation pro 76.9 87 0.0019 32.0 13.9 96 83-181 87-184 (701)
113 PRK15433 branched-chain amino 73.1 95 0.0021 30.2 14.6 75 145-237 268-342 (439)
114 PF05525 Branch_AA_trans: Bran 68.2 1.2E+02 0.0026 29.4 14.5 76 144-236 263-338 (427)
115 PTZ00206 amino acid transporte 62.6 67 0.0014 31.6 10.0 49 338-386 120-168 (467)
116 KOG3660 Sodium-neurotransmitte 62.2 1.2E+02 0.0025 31.2 11.6 46 210-255 216-262 (629)
117 TIGR00796 livcs branched-chain 57.8 1.8E+02 0.0038 27.8 15.7 76 145-237 258-333 (378)
118 COG4146 Predicted symporter [G 52.5 2.1E+02 0.0046 27.1 18.6 227 143-378 104-354 (571)
119 PRK00968 tetrahydromethanopter 47.5 27 0.00059 29.8 3.7 32 294-325 204-236 (240)
120 COG4060 MtrD Tetrahydromethano 39.2 41 0.00089 27.6 3.4 31 295-325 195-226 (230)
121 PF03806 ABG_transport: AbgT p 34.0 4.9E+02 0.011 25.9 14.4 97 118-233 301-403 (502)
122 PF12263 DUF3611: Protein of u 33.8 2.9E+02 0.0063 23.3 9.0 46 273-318 66-114 (183)
123 PF11947 DUF3464: Protein of u 31.7 28 0.00061 28.3 1.5 60 88-148 70-135 (153)
124 PF11174 DUF2970: Protein of u 30.9 1.4E+02 0.003 19.7 4.3 26 275-300 3-28 (56)
125 COG1114 BrnQ Branched-chain am 30.5 5.1E+02 0.011 25.1 14.9 76 144-236 265-340 (431)
126 PF11998 DUF3493: Protein of u 28.6 2.1E+02 0.0046 20.1 6.9 41 288-328 4-44 (75)
127 PHA03164 hypothetical protein; 22.3 1E+02 0.0023 21.4 2.6 31 295-325 49-79 (88)
128 PF12666 PrgI: PrgI family pro 20.3 2.1E+02 0.0046 20.7 4.3 30 72-101 10-39 (93)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=5.6e-47 Score=373.77 Aligned_cols=324 Identities=40% Similarity=0.703 Sum_probs=284.4
Q ss_pred CcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHH
Q 016040 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (396)
Q Consensus 72 ~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 151 (396)
+++++|+++.+|+++++++.++|+|+|..++.+....+||+.+++|+++++.+++.+++|+|+++++|++||.|.|+++.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~ 102 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT 102 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence 44689999999999999999999999999998876558999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccc--CCCCCchhHHHHHHHHHHHHHHhhhhh
Q 016040 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCF--ADGFNLLDPVAVLILLVCNGIAMSGTR 229 (396)
Q Consensus 152 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~g~k 229 (396)
+|+.+|+++||.+++.|....+..+...+.|+..++. .....+....-.. +.......+++++++++++++|++|+|
T Consensus 103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~-~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik 181 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLN-KQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK 181 (557)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999999888765 2111111000000 000012346677788888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--------CCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCC
Q 016040 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS 301 (396)
Q Consensus 230 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 301 (396)
..+|++.+++.++++.++++++.++.+.+.+|+. ++.|.++.+++.++..++|+|.|+|.+++++||+|||+
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 9999999999999999998888888776666654 56677888899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 016040 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (396)
Q Consensus 302 r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (396)
|++||+++.++.+++++|++..++.....|+++++.++|+..+++..+.++...++.+..+++.+++.++.+++.+|+++
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~ 341 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIY 341 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888999999888888999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhcC
Q 016040 382 QIARAHMIPPWFALA 396 (396)
Q Consensus 382 ~~a~dg~lP~~f~~~ 396 (396)
+|||||.+|++|+|+
T Consensus 342 amarDGlLP~~fakv 356 (557)
T TIGR00906 342 AMARDGLLFKWLAQI 356 (557)
T ss_pred HHHcCCCccHHHhcc
Confidence 999999999999985
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=6.1e-45 Score=356.14 Aligned_cols=309 Identities=21% Similarity=0.338 Sum_probs=264.6
Q ss_pred CcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHH
Q 016040 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (396)
Q Consensus 72 ~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 151 (396)
++++||+++.+|+.++++|.++|+|+|..++..+.. +||..+++|++++++.++++++++||++++|++||.|.|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345899999999999999999999999999999887 8998888999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhH
Q 016040 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (396)
Q Consensus 152 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 231 (396)
+|+..||++||.+|+.|+...+......+.++..+ + . ... ...+.+.++++++++++|++|+|..
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~-~-----------~~~--~~~~~~~~~~~~l~~~iN~~gvk~~ 166 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-G-A-----------FGG--VPQWVFALAALTIVGTMNMIGVKWF 166 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-c-----------CCC--CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877666665555555432 1 0 000 1134667788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc---ccc--cC---C------CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhh
Q 016040 232 SWLNWISSIVSSCVIVFVIIVGFVH---GKT--TN---L------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (396)
Q Consensus 232 ~~~~~~~~~~~i~~~i~~~i~~~~~---~~~--~~---~------~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 297 (396)
++++.++..+|++.++++++.++.. .++ .+ + .++.|+++.+++.++..++|+|.|+|.+++++||+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 9999999999988877766655431 111 01 1 13445567777778888999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhch
Q 016040 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (396)
Q Consensus 298 k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (396)
|||+|++|||+..++..+.++|++..++.....|.+++. ..+|+..++++.+.+++..++.+..+++.+++.++.+++.
T Consensus 247 knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~ 326 (499)
T PRK15049 247 KDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCT 326 (499)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988774 3579999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhcC
Q 016040 377 ARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 377 sR~l~~~a~dg~lP~~f~~~ 396 (396)
+|++++|||||.+|++|+|+
T Consensus 327 sR~l~a~Ardg~lP~~f~kv 346 (499)
T PRK15049 327 GRILRSMAMGGSAPSFMAKM 346 (499)
T ss_pred HHHHHHHHhcCCcCHHHHHh
Confidence 99999999999999999985
No 3
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=4.5e-44 Score=347.50 Aligned_cols=308 Identities=19% Similarity=0.309 Sum_probs=267.6
Q ss_pred cCcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHH
Q 016040 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (396)
Q Consensus 71 ~~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 150 (396)
++++++|+++.+|+.++++|.++|+|+|..++..+.. +||..+++|++++++.++++++++|+++++|++||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4557899999999999999999999999999999887 889999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 151 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
.+|+..|+++||.+|+.+....+......+.++..+.+ +. ..+.+..+++++..++|++|+|.
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~------------~~-----~~~~~~~~~~~l~~~lN~~gv~~ 156 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP------------DV-----PTWIWAAAFFIIINAVNLVNVRL 156 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------cC-----cHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999988877777777777775543 00 12356778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc---ccc------ccCC---CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhc
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFV---HGK------TTNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~---~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 298 (396)
.++++.++..+|++.++++++.++. ..+ ..+. .++.+.++.+++.++...+|+|.|+|.+++++||+|
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 9999999999998776666554432 111 1111 123356788899999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 016040 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (396)
Q Consensus 299 ~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (396)
||+|++||++..+.....++|++..+......|+++... ++|+..++++.+++++..++.+.++++.+++.++.+++.+
T Consensus 237 ~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 316 (458)
T PRK10249 237 DPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNS 316 (458)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888888877643 4799999998888888888999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhcC
Q 016040 378 RYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 378 R~l~~~a~dg~lP~~f~~~ 396 (396)
|++++|||||.+|++|+|+
T Consensus 317 R~l~a~ardg~lP~~~~kv 335 (458)
T PRK10249 317 RMLFGLSVQGNAPKFLTRV 335 (458)
T ss_pred HHHHHHhcCCCcCHHHHHh
Confidence 9999999999999999885
No 4
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=4e-44 Score=349.52 Aligned_cols=306 Identities=19% Similarity=0.325 Sum_probs=262.3
Q ss_pred cccccccchhHHHHHhhhccccchhhhccHHhHhhccCh-HHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHH
Q 016040 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (396)
Q Consensus 73 ~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 151 (396)
+++||+++.+++.+++++.++|+|+|..++..+.. +|| ..+++|++++++.++++++++|+++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 45899999999999999999999999999999887 787 4899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhH
Q 016040 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (396)
Q Consensus 152 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 231 (396)
+|+..|+++||.+|+++....+......+.++..+.+ + . ..+...+++++++.++|++|+|..
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p------------~---~--~~~~~~~~~~~~~~~in~~gvk~~ 151 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP------------Q---V--PVWPWCLLFCALIFGLNVVSTRFF 151 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------------c---C--cHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999998887776666655544332 0 0 123445566677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------ccc-------cCC--CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhh
Q 016040 232 SWLNWISSIVSSCVIVFVIIVGFVH------GKT-------TNL--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (396)
Q Consensus 232 ~~~~~~~~~~~i~~~i~~~i~~~~~------~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E 296 (396)
++++..+..++++.++++++.++.. .+. +++ .++.+++..+++.++..++|+|.|+|.+++++||
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999988877666655321 000 111 1333455667888889999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 016040 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (396)
Q Consensus 297 ~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (396)
+|||+|++||++..++.++.++|++..+++....|.++.. .++|+..++++.+++++..++.+..+++.+++.++++++
T Consensus 232 ~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~ 311 (471)
T PRK11387 232 TENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYA 311 (471)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888877764 457999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcC
Q 016040 376 QARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 376 ~sR~l~~~a~dg~lP~~f~~~ 396 (396)
.+|++++|||||.+|++|+|+
T Consensus 312 ~sR~l~a~ardg~lP~~f~~~ 332 (471)
T PRK11387 312 SGRMLWSLSNEGTLPACFARL 332 (471)
T ss_pred hhHHHHHHHhcCCcCHHHHHh
Confidence 999999999999999999985
No 5
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=2.4e-43 Score=342.25 Aligned_cols=308 Identities=21% Similarity=0.329 Sum_probs=266.8
Q ss_pred cCcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHH
Q 016040 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (396)
Q Consensus 71 ~~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 150 (396)
.++++||+++.+|..+++++.++|+|+|..++..+.. +||..+++|++++++.++++++++|+++++|.+||.|+|+++
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3446899999999999999999999999999999987 888999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 151 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
.+||..|+++||.+++.+....+......+.++..+.+ +. ..+....++++++..+|++|+|.
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p------------~~-----~~~~~~~i~~~~~~~lN~~gv~~ 147 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP------------EI-----PTWVSAAVFFVVINAINLTNVKV 147 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------cC-----cHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999888888888876543 00 12356677778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc---cc--c----ccCC---CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhc
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFV---HG--K----TTNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~---~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 298 (396)
.++++.++..++++.++++++.++. .. . ..+. .++.|+++.+++.++....|+|.|+|.+++++||+|
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 9999999999998877666553321 11 1 1111 134466777888888889999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 016040 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (396)
Q Consensus 299 ~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (396)
||+|++||++..+.....++|+..........|.+++.. ++|+..++++.+.++...++.+.++.+.+++.++++++.|
T Consensus 228 nP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~s 307 (456)
T PRK10238 228 NPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNS 307 (456)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887777788887743 5799999998888888889999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhcC
Q 016040 378 RYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 378 R~l~~~a~dg~lP~~f~~~ 396 (396)
|++++|||||.+|++|+|+
T Consensus 308 R~l~a~ardg~lP~~f~kv 326 (456)
T PRK10238 308 RMLFGLAQQGNAPKALASV 326 (456)
T ss_pred HHHHHHHhCCCccHHHHhh
Confidence 9999999999999999985
No 6
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=3.5e-43 Score=340.99 Aligned_cols=307 Identities=19% Similarity=0.306 Sum_probs=269.1
Q ss_pred CcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHH
Q 016040 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (396)
Q Consensus 72 ~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 151 (396)
++++||+++.+|+.++++|.++|+|+|..++..+.. +||..+++|++++++.++++++++|+++++|++||.|.|++|.
T Consensus 5 ~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~ 83 (461)
T PRK10746 5 KPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRY 83 (461)
T ss_pred chHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 456899999999999999999999999999999888 8999899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhH
Q 016040 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (396)
Q Consensus 152 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 231 (396)
+|+..|+.+||.+|+.|+...+......+.++..+++ +. ..+.+..+++++...+|++|+|..
T Consensus 84 ~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p------------~~-----~~~~~~~~~~~~~~~lN~~gv~~~ 146 (461)
T PRK10746 84 MSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP------------EM-----AQWIPALIAVALVALANLAAVRLY 146 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------------CC-----chHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999998888888888888776554 10 123566677788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-----cc------ccCCC---CCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhh
Q 016040 232 SWLNWISSIVSSCVIVFVIIVGFVH-----GK------TTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (396)
Q Consensus 232 ~~~~~~~~~~~i~~~i~~~i~~~~~-----~~------~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 297 (396)
++++..++.+|++.++++++.++.. .+ .+|+. ++.+.++.++..++...+|+|.|+|.+++.+||+
T Consensus 147 ~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~ 226 (461)
T PRK10746 147 GEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999988777666544321 11 12221 2445678889999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhch
Q 016040 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (396)
Q Consensus 298 k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (396)
|||+|++|||+..+...+.++|++..+++....|.+++.. ++|+..++++.+.+....++++.++++.+++.++.+++.
T Consensus 227 knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~ 306 (461)
T PRK10746 227 KNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSC 306 (461)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999989999988764 469999999888888888899999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhcC
Q 016040 377 ARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 377 sR~l~~~a~dg~lP~~f~~~ 396 (396)
||++++|||||.+|++|+|+
T Consensus 307 sR~l~~~a~~g~lP~~~~~~ 326 (461)
T PRK10746 307 GRMLYALAKNRQLPAAMAKV 326 (461)
T ss_pred HHHHHHHHhCCCcCHHHHHh
Confidence 99999999999999999884
No 7
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=4.7e-43 Score=340.89 Aligned_cols=307 Identities=20% Similarity=0.268 Sum_probs=265.9
Q ss_pred CcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHH
Q 016040 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (396)
Q Consensus 72 ~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 151 (396)
+.++||+++.+|+.+++++.++|+|+|..++..+.. +||..+++|++++++.++.+++++|+++++|.+||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 345799999999999999999999999999999887 8888888999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhH
Q 016040 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (396)
Q Consensus 152 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 231 (396)
+||..|+++||.+|++++...+......+.++..+.+ +. ..+.+.+++++++..+|++|+|..
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~-----~~~~~~~~~~~~~~~~n~~gv~~~ 148 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP------------DI-----PLWLFSLILTIVLTLTNLYSVKSY 148 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------cC-----cHHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999888888888876654 10 134677888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc---c----cc---cCC---CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhc
Q 016040 232 SWLNWISSIVSSCVIVFVIIVGFVH---G----KT---TNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (396)
Q Consensus 232 ~~~~~~~~~~~i~~~i~~~i~~~~~---~----~~---~~~---~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 298 (396)
++++.+.+.++++.++++++.++.. . +. .++ .++.|+++.+++.++...+|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k 228 (452)
T TIGR01773 149 GEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESS 228 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhc
Confidence 9999999999998877766654321 1 11 111 123456777899999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhch
Q 016040 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID--MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (396)
Q Consensus 299 ~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (396)
||+|++||++..+.....++|++..+......|.++.. +..|+..+.+..+++++..++.+..+++.+++.++.+++.
T Consensus 229 ~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~ 308 (452)
T TIGR01773 229 NPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTT 308 (452)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777777765543 2348888888888888888899999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhcC
Q 016040 377 ARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 377 sR~l~~~a~dg~lP~~f~~~ 396 (396)
+|++++|||||.+|++|+|+
T Consensus 309 sR~~~a~ardg~lP~~~~~v 328 (452)
T TIGR01773 309 SRMLYSLAERGDAPRVFMKL 328 (452)
T ss_pred HHHHHHHHhCCCcCHHHHhh
Confidence 99999999999999999985
No 8
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=2.2e-42 Score=335.32 Aligned_cols=309 Identities=20% Similarity=0.305 Sum_probs=260.1
Q ss_pred cccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHh
Q 016040 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (396)
Q Consensus 73 ~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 152 (396)
.+++|+++.++++++.++.++|+|+|..++.... .|+..+++|+++++..++.+++++|+++++|++||.|.|+++.+
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~ 81 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCF 81 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHc
Confidence 3468999999999999999999999999988755 34557889999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
||..|+++||.+|+.+.............+...+++ .. .+++...++.++++++++++|++|+|..+
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~~ln~~gvk~~~ 148 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP-IL------------KDPLVLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc------------CCcHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 999999999999998877766666566666665544 11 11112345667778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCC-CCCC---CCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHH
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLP---YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL 308 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~ 308 (396)
+++++++.++++.++++++.++...+.+++. .+.+ .++.++..++...+|+|.|+|.+++++||+|||+|++||++
T Consensus 149 ~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai 228 (445)
T PRK10644 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHH
Confidence 9999999999888887777666544333322 1211 24566777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 016040 309 VGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (396)
Q Consensus 309 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 387 (396)
..+..+++++|++..++.....|++++. .+.|+.+++++..+++...++.+..+++.+++.++.....+|++++|+|||
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg 308 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888887764 457998888887778877888888889999999999999999999999999
Q ss_pred CCchhhhcC
Q 016040 388 MIPPWFALA 396 (396)
Q Consensus 388 ~lP~~f~~~ 396 (396)
.+|++|+|+
T Consensus 309 ~lP~~~~~v 317 (445)
T PRK10644 309 LFPPIFARV 317 (445)
T ss_pred CccHHHHhh
Confidence 999999985
No 9
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.9e-42 Score=335.53 Aligned_cols=307 Identities=17% Similarity=0.244 Sum_probs=262.4
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhch
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~ 154 (396)
.+|+++.++++++.++.++|+|++..|+... . +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 4789999999999999999999999988753 4 6778889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 016040 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (396)
Q Consensus 155 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 234 (396)
..|++.||.+|+.++......+.....|+..+++ ... ++....++.++++++++++|++|+|..+++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~-~~~------------~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFG-ATL------------SPVQICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc------------chHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999988777767677777776665 211 112234566777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCC-CCCCCC---HHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHH
Q 016040 235 NWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVG 310 (396)
Q Consensus 235 ~~~~~~~~i~~~i~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~ 310 (396)
+.+....+++.++++++.++...+++++. ++.+.+ +.++..++....|+|.|+|.+++++||+|||+||+||++..
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 228 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLG 228 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHH
Confidence 99999988888877777666554444443 333333 35677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCC
Q 016040 311 SMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMI 389 (396)
Q Consensus 311 ~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 389 (396)
+..+++++|++...+.....|.+++. ++.|+.+.+++..+++...++.+..+++.+++.+++..+.+|++++|+|||.+
T Consensus 229 ~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~l 308 (438)
T PRK10655 229 GTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYF 308 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 99999999999998888888887764 35788888888777888788888888999999999999999999999999999
Q ss_pred chhhhcC
Q 016040 390 PPWFALA 396 (396)
Q Consensus 390 P~~f~~~ 396 (396)
|++|+|+
T Consensus 309 P~~~~~v 315 (438)
T PRK10655 309 PKIFSRV 315 (438)
T ss_pred hHHHHhh
Confidence 9999984
No 10
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=3.6e-42 Score=332.49 Aligned_cols=306 Identities=18% Similarity=0.230 Sum_probs=261.3
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhch
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~ 154 (396)
.+|+++.++++++.++.++|+|++..|+... . .|+..+++|+++++..++.+++++|+++++|++||.|.|++| +|+
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 4789999999999999999999999999864 4 688899999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 016040 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (396)
Q Consensus 155 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 234 (396)
.+|+.+||.+|+...............|+..+++ ... ++....+++++++++++++|++|.|..+++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p-~~~------------~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFP-VLN------------DPIPAGIACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccC------------ChHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999987766666666677778776655 110 111123556677778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccC----CCCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHH
Q 016040 235 NWISSIVSSCVIVFVIIVGFVHGKTTN----LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVG 310 (396)
Q Consensus 235 ~~~~~~~~i~~~i~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~ 310 (396)
+.+..+++++.++.+.+.++.+.++++ +.+..+.++.+++.++..++|+|.|+|.+++++||+||||||+||++..
T Consensus 147 ~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~ 226 (435)
T PRK10435 147 TTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATML 226 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHH
Confidence 999888888777666655554433332 2222234577899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCC
Q 016040 311 SMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMI 389 (396)
Q Consensus 311 ~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~l 389 (396)
+..+++++|++..+......|.+++. .++|+...+++.+++++..++.+..+++++++.+++.+..+|..++|||||.+
T Consensus 227 ~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~l 306 (435)
T PRK10435 227 GTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNF 306 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999988874 56799988888888899899998889999999999999999999999999999
Q ss_pred chhhhcC
Q 016040 390 PPWFALA 396 (396)
Q Consensus 390 P~~f~~~ 396 (396)
||+|+|+
T Consensus 307 P~~f~k~ 313 (435)
T PRK10435 307 PKVYGEV 313 (435)
T ss_pred cHHHHhh
Confidence 9999985
No 11
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=9.3e-42 Score=331.88 Aligned_cols=308 Identities=19% Similarity=0.376 Sum_probs=263.1
Q ss_pred cCcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHH
Q 016040 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (396)
Q Consensus 71 ~~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 150 (396)
+++++||+++.+++++++++.++|+|++..++..... +||..+++|++++++.++++++++|+++++|.+||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3456899999999999999999999999999998876 898899999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 151 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
.+||..|+++||.+++.+....+......+.++..+.+ +. + .....++++++...+|++|+|.
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~--~~~~~~~~~~l~~~ln~~gv~~ 144 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP------------TV---P--HWIWVLSVVLIICAVNLMSVKV 144 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------------CC---C--hHHHHHHHHHHHHHHHHccchh
Confidence 99999999999999999988777777777777766543 00 1 1244556677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------cc-cccCCC------CCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhh
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFV-------HG-KTTNLD------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~-------~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E 296 (396)
.++++.+++.++++.++++++.++. .. ++.+.. ++.+.++.+++.++..++|+|.|+|.+++++||
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E 224 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999998887766554321 11 111111 233556778899999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 016040 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (396)
Q Consensus 297 ~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (396)
+|||+|++|||+..+..++.++|++..+......|.+++.. ++|+...++..+.++...++.+..+.+.+++.++++++
T Consensus 225 ~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (457)
T PRK10580 225 AKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFG 304 (457)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888888887753 46888888888888888888888889999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcC
Q 016040 376 QARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 376 ~sR~l~~~a~dg~lP~~f~~~ 396 (396)
.+|++++|||||.+|++|+|+
T Consensus 305 ~sR~~~~~ardg~lP~~~~kv 325 (457)
T PRK10580 305 VGRMLHGMAEQGSAPKIFSKT 325 (457)
T ss_pred HHHHHHHHHhCCCcCHHHHhh
Confidence 999999999999999999985
No 12
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=1.3e-41 Score=331.59 Aligned_cols=306 Identities=18% Similarity=0.315 Sum_probs=266.5
Q ss_pred cccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHh
Q 016040 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (396)
Q Consensus 73 ~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 152 (396)
++++|+++.+++.++++|.++|+|+|..++.++.. +||..+++|++++++.++++++++|+++..|..|+.|.|+++.+
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~ 94 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLL 94 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHh
Confidence 45899999999999999999999999999999987 88888999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
|+..||+.||.+++.+....+..+...+.++..+.+ . . ..+.++.+++++++++|++|.|..+
T Consensus 95 g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p-~-----------~-----~~~~~~~~~~~~~~~iN~~g~~~~~ 157 (469)
T PRK11049 95 GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP-D-----------L-----SDWVASLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-----------C-----cHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999987777777777777776544 1 0 0234566677888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-----cc----cCC------CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhh
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVHG-----KT----TNL------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~~-----~~----~~~------~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 297 (396)
+++.+.+.+|++.++++++.++... ++ .++ .++.|.++.+++.++...+|+|.|+|.+++++||+
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 9999999999998888877765421 01 111 13445677789999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhch
Q 016040 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (396)
Q Consensus 298 k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (396)
|||+|++||++..+.+...++|++...+.....|.+++.. ++|+.+.++..++++...++.+..+++.+++.++.+++.
T Consensus 238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~ 317 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFST 317 (469)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999888888887743 479988888888888889999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhcC
Q 016040 377 ARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 377 sR~l~~~a~dg~lP~~f~~~ 396 (396)
+|++++|||||.+|++|+|+
T Consensus 318 sR~l~a~ardg~lP~~~~kv 337 (469)
T PRK11049 318 SRMLFGLAQEGVAPKAFAKL 337 (469)
T ss_pred HHHHHHHHhCCCCCHHHHhh
Confidence 99999999999999999884
No 13
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-43 Score=325.22 Aligned_cols=306 Identities=20% Similarity=0.290 Sum_probs=279.2
Q ss_pred ccccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHh
Q 016040 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (396)
Q Consensus 74 ~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 152 (396)
++||+|..+|+.++++|..+|+|+|+..+..+.. +||+ .++++++.+++.+++..+++||+..+|.+|++..|.+|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999988 9997 9999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
++.+|+..||.||+.|....+....+.+..++.+.+ .. -..+++..++.++..++|.+++|.++
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p-~~---------------v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP-DT---------------VPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC-CC---------------CChHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999998875 11 11457888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---ccc-------cCC--CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCC
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVH---GKT-------TNL--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~---~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p 300 (396)
..+.++..+|++.++++++.++.. ..+ +.+ .+.+++|+.+++..+..+.|+|.|.|.+.-.++|.|||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 999999999999999988887652 111 011 13456789999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc---------cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 016040 301 SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID---------MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371 (396)
Q Consensus 301 ~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (396)
+|++|||+.-..+.+.++|++..+.+...+|+++.+ ..+|+..++++.|.+.+..+++..++.+.+++.++
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987742 23699999999999999999999999999999999
Q ss_pred HhhchhHHHHHHHhcCCCchhhhcC
Q 016040 372 GSLGQARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 372 ~~~~~sR~l~~~a~dg~lP~~f~~~ 396 (396)
.++++||++++||+||..||+|+|+
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~ 368 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKV 368 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhh
Confidence 9999999999999999999999985
No 14
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-43 Score=341.51 Aligned_cols=321 Identities=33% Similarity=0.544 Sum_probs=268.7
Q ss_pred cccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cccchhhhHHH
Q 016040 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVE 151 (396)
Q Consensus 73 ~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~-~Gg~y~~~~~~ 151 (396)
+++||+|+++|+.++++|.++|+|+++..+.++...+||+.+++++++++.+++.++|++|++.++|. +|+.|.|.+|.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 57999999999999999999999999999999999666679999999999999999999999999999 59999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHh-hhhhh
Q 016040 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM-SGTRR 230 (396)
Q Consensus 152 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~k~ 230 (396)
.|+.+||++||.+++.|+...+.++.+.+.++..+.. ...+....++.+..-+....+++++++.++.+-. .+.|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~---~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG---ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 9999999999999999999999999999999999861 1111111122222333344454444444444433 66777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCC---------CCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCC
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS 301 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~ 301 (396)
....+++++.+.++.+.+++++|....+..|+. ++.|.++.+++.++..+.|+|.|+|.++..+||.|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 777777777777777777777777766654443 37777899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCchHHHHHH-HhcchHHHH---HHHHHHHHHHHHHHHHHhhc
Q 016040 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTE--IDMNAAYSIAFR-QIGMNWAKY---LVSVCALKGMTTSLLVGSLG 375 (396)
Q Consensus 302 r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~p~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 375 (396)
|++|+|+..++.++.++|++..+.+...+|+++ +.++.+....+. ..+..+... +++++++++..+++++.+++
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~ 342 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYA 342 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999988 776665555555 455454445 99999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcC
Q 016040 376 QARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 376 ~sR~l~~~a~dg~lP~~f~~~ 396 (396)
.+|.+++||+||.+||+|+|+
T Consensus 343 ~sR~l~amA~~G~~Pk~f~~v 363 (554)
T KOG1286|consen 343 GSRVLYALAKDGLAPKFFARV 363 (554)
T ss_pred hHHHHHHHHhcCCcchHHhhc
Confidence 999999999999999999985
No 15
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=1.5e-41 Score=329.74 Aligned_cols=310 Identities=22% Similarity=0.317 Sum_probs=256.6
Q ss_pred CcccccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHH
Q 016040 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (396)
Q Consensus 72 ~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 150 (396)
+++++|++++++.++++++.++|+|++..++.+....+++. .+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 45689999999999999999999999999998776645555 88999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 016040 151 ELGDFVAYIAAGNIL-LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (396)
Q Consensus 151 ~~g~~~g~~~g~~~~-~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 229 (396)
.+||..|++.||..+ .......+..+...++++....+ . .......+.+++++++..+|++|+|
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-~--------------~~~~~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-I--------------DPLLGKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--------------chHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999744 45566677777778887765443 1 0111235666777778899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC---C--CCCC-HHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCC
Q 016040 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDP---F--LPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (396)
Q Consensus 230 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~---~--~~~~-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~ 303 (396)
..+|++.+++.++++.++++++.++...+..++.. . ...+ +.+++.++...+|+|.|+|.+++++||+|||||+
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 99999999999999988777776654323333221 1 1112 5678888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 016040 304 IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQI--GMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380 (396)
Q Consensus 304 ~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 380 (396)
+||++..++.+++++|++..++.....|.|++.. +.|+.++++.. .+++...++.+..+++.+++.++++.+.+|++
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 307 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLE 307 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999888888887653 56888877754 35566667777888889999999999999999
Q ss_pred HHHHhcCCCchhhhcC
Q 016040 381 TQIARAHMIPPWFALA 396 (396)
Q Consensus 381 ~~~a~dg~lP~~f~~~ 396 (396)
++|+|||.+|++|+|+
T Consensus 308 ~a~ardg~lp~~~~~v 323 (445)
T PRK11357 308 YAMAKDNLFFKCFGHV 323 (445)
T ss_pred HHHHhcCCchHHHHHh
Confidence 9999999999999984
No 16
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=1.7e-41 Score=328.31 Aligned_cols=318 Identities=30% Similarity=0.523 Sum_probs=275.6
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhch
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~ 154 (396)
++|+++.++.+++.++.++|+|++..++..... +|+..+++|+++++..++.+++++|+++++|++||.|.|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999998776 7888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSN--NSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 155 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
..|++.||.+++.+....+..+..+++++..+++.. +.+.+.. .....+....+..++++++++++|++|+|..+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLT---AKPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhh---cCCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 999999999999999999999999999988776510 0010000 00000111224567788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHH
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~ 312 (396)
|++.++..++++.++++++.++.+.+.+++.++.+.++.++..++...+|+|.|+|.+.+++||+|||+|++||++..+.
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 99999999999988877777776666666666666778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 313 CMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 313 ~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
.++.++|++..+......|.+++. ++.|+..+.++.+++++..++.+..+++.+++.++++...+|++++++|||.+|+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 999999999999988888887764 4468888888888899999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 016040 392 WFALA 396 (396)
Q Consensus 392 ~f~~~ 396 (396)
+|+|+
T Consensus 317 ~~~~~ 321 (429)
T TIGR00909 317 SLSKV 321 (429)
T ss_pred HHHHc
Confidence 99885
No 17
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=1.2e-41 Score=333.40 Aligned_cols=307 Identities=20% Similarity=0.270 Sum_probs=254.2
Q ss_pred CcccccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHH
Q 016040 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (396)
Q Consensus 72 ~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 150 (396)
++++||+++.+++.++++|.++|+|+|..++.++.. +||. .+++|++++++.++++++++|+++++|++||.|.|+++
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~ 88 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQN 88 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 456899999999999999999999999999999887 8886 89999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 151 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
.+|+..|++.||.+|+.+....+........++..+.+ .. + .+....++++++.++|++|.|.
T Consensus 89 ~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~------------~~---~--~~~~~~~~~~~~~~lN~~gv~~ 151 (489)
T PRK10836 89 YVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP------------DT---P--GWIWSALFLGVIFLLNYISVRG 151 (489)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC------------CC---c--hHHHHHHHHHHHHHHHHHcchh
Confidence 99999999999999998877766544444434433322 10 1 1244566677788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc------cc----ccCCC---CCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhh
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFVH------GK----TTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~~------~~----~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 297 (396)
.++++.++...|++.++.+++.++.. .+ ++|+. ...+.++.+++.++....|+|.|+|.+++++||+
T Consensus 152 ~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 231 (489)
T PRK10836 152 FGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES 231 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh
Confidence 99999999999988777665544321 11 11221 1113356666766667789999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc---------cCchHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 016040 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID---------MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTS 368 (396)
Q Consensus 298 k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (396)
|||+|++|||+..++..+.++|++..+.+....|.++.. ..+|+..+++..+.++...++.+.++++.+++
T Consensus 232 knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~ 311 (489)
T PRK10836 232 EDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSA 311 (489)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888865431 13688888888888888889999999999999
Q ss_pred HHHHhhchhHHHHHHHhcCCCchhhhcC
Q 016040 369 LLVGSLGQARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 369 ~~~~~~~~sR~l~~~a~dg~lP~~f~~~ 396 (396)
.++.+++.+|++++|||||.+|++|+|+
T Consensus 312 ~n~~~~~~sR~l~a~Ardg~lP~~~~kv 339 (489)
T PRK10836 312 GNSGMYASTRMLYTLACDGKAPRIFAKL 339 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCHHHHhh
Confidence 9999999999999999999999999985
No 18
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=3.7e-41 Score=323.58 Aligned_cols=300 Identities=20% Similarity=0.252 Sum_probs=244.2
Q ss_pred cchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHH
Q 016040 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (396)
Q Consensus 79 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 158 (396)
+++|+..++.+++++|+|+|..++.+... +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||..|+
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999999887 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 016040 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (396)
Q Consensus 159 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~ 238 (396)
+.||.+++.+....+........++...++ .. ......+.+++++++.++|++|+|..+|++.+.
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFG-WS--------------SWQLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CC--------------CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999987776665555555566665554 11 111235667778889999999999999999987
Q ss_pred HHHHHHHHHHHHHHhhccccccCC--CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHHHH
Q 016040 239 SIVSSCVIVFVIIVGFVHGKTTNL--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMIT 316 (396)
Q Consensus 239 ~~~~i~~~i~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~ 316 (396)
..+.+..++.+.. ....+..++ .+..+.++.+++.++...+|+|.|+|.+++++||+|||+||+||++..+..+++
T Consensus 145 ~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~ 222 (410)
T PRK11021 145 ALLIVALVVAIWW--AGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAG 222 (410)
T ss_pred HHHHHHHHHHHHH--HcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 7654433322211 112222222 223345788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccc-ccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCchhhhc
Q 016040 317 AVYCLMALALTMMVKYTEI-DMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFAL 395 (396)
Q Consensus 317 ~~y~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~ 395 (396)
++|++..++.....+.++. ..+.|...++++..+++...++.+..+++.+++.++++...+|++++|+|||.+|++|+|
T Consensus 223 ~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k 302 (410)
T PRK11021 223 LVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLAR 302 (410)
T ss_pred HHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHh
Confidence 9999998887666654443 234677777776655666677788888999999999999999999999999999999998
Q ss_pred C
Q 016040 396 A 396 (396)
Q Consensus 396 ~ 396 (396)
+
T Consensus 303 ~ 303 (410)
T PRK11021 303 L 303 (410)
T ss_pred h
Confidence 5
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=4.9e-41 Score=328.01 Aligned_cols=309 Identities=22% Similarity=0.323 Sum_probs=262.7
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccc-cccchhhhHHHh
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVEL 152 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~-~Gg~y~~~~~~~ 152 (396)
++|+++.++++++.++.++|+|++..|...... +|+. .+++|++++++.++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~-~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASV-AGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 478999999999999999999999999988765 7876 7899999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
||..|++.||.+|+.+.......+.....++..+++ .... ..+....++.+++++++.++|++|+|..+
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p-~~~~----------~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFP-LFGS----------GNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcC----------CCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 999999999999999888777777777777776654 1100 11122346677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCC-CCC-------CCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCCh
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFL-------PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~ 304 (396)
|++.+.+.++++.++++++.++...+.+++. ++. +..+.+++.++...+|+|.|+|.+++++||+|| +|++
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~i 231 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccc
Confidence 9999999999988888777766533332221 111 124567888899999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cCch-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 016040 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (396)
Q Consensus 305 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (396)
||++..+..+++++|++..++.....|.+++. .++| ...+.+...+++...++.+..+++.+++.++.+.+.+|++++
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888888764 3567 677777777888888899999999999999999999999999
Q ss_pred HHhcCCCchhhhcC
Q 016040 383 IARAHMIPPWFALA 396 (396)
Q Consensus 383 ~a~dg~lP~~f~~~ 396 (396)
|||||.+|++|+|+
T Consensus 312 mardg~lP~~~~~v 325 (473)
T TIGR00905 312 AAKDGLFPKIFGRV 325 (473)
T ss_pred HHhCCChhHHHHhh
Confidence 99999999999885
No 20
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=9.8e-41 Score=328.36 Aligned_cols=312 Identities=20% Similarity=0.286 Sum_probs=252.5
Q ss_pred cCcccccccchhHHHHHhhhccccchhhhccHHhHhhccCh-H-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhh
Q 016040 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (396)
Q Consensus 71 ~~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~ 148 (396)
++++++|+++.+++++++++.++|+|++..++.++.. +|+ + .+++|++++++.++.+++++|+++++|++||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 4567999999999999999999999999999998877 665 3 568899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhh
Q 016040 149 RVELGDFVAYIAAGNILLE-AVVGAAGLARSWSSYLAS-MIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (396)
Q Consensus 149 ~~~~g~~~g~~~g~~~~~~-~~~~~a~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (396)
++.+|+..|++.+|..++. +....+..+..++.++.. ..+ +...+.+...+++++++++++++|++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~------------~~~~~~~~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFP------------DCEVPEWAIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987763 344566666666776543 222 11111222346778888899999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhccc---cccC--CCC-CC--CCCHHHHHHHHHHHHHHhhchhHHhhhhhhhc
Q 016040 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHG---KTTN--LDP-FL--PYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (396)
Q Consensus 227 g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~---~~~~--~~~-~~--~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 298 (396)
|+|..+|++.+++.++++.++++++.++... +..+ ... +. +.++.+++.++..++|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 9999999999999999998887777665432 1111 111 11 23466788899999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchh
Q 016040 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSI-AFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (396)
Q Consensus 299 ~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (396)
||+|++||++..+..+++++|++..++.....|.+++..+.+... ..+...+ +...++.+...++.+++.++.+.+.+
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~s 341 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSS 341 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888887765443332 3333333 45567778888899999999999999
Q ss_pred HHHHHHHhcCCCchhhhcC
Q 016040 378 RYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 378 R~l~~~a~dg~lP~~f~~~ 396 (396)
|++++|||||.+|++|+|+
T Consensus 342 R~l~a~ardg~lP~~~~~v 360 (501)
T TIGR00911 342 RLFFVGGREGHLPSLLSMI 360 (501)
T ss_pred HHHHHHHhcCCccHHHHHh
Confidence 9999999999999999874
No 21
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=311.64 Aligned_cols=308 Identities=21% Similarity=0.353 Sum_probs=285.7
Q ss_pred cCcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHH
Q 016040 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (396)
Q Consensus 71 ~~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 150 (396)
++++++|.|+.+|.-++++|..+|+|.|...+...+. +||+.++++++++++.+++.-.++||..+-|++|++.+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 3456899999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 151 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
.+|++.||++||.||+.++....+...+.+.|++.+++.. ..++.+++++++...+|..++|.
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-----------------P~Wv~al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-----------------PQWVFALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998711 14688899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc--c---------cccCCC---CCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhh
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFVH--G---------KTTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~~--~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E 296 (396)
++.++..+..+|++.++.+++.++.. . +.+|.. +++|+|+.+++.++..++|+|.|.|.+...+.|
T Consensus 149 FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 149 FGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999999888876542 1 122222 788999999999999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 016040 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (396)
Q Consensus 297 ~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (396)
.|||+|.+|||+-.-.....++|+...+.+....|+++++. .+|+...++..|-++...++++..+.+.++++++.+++
T Consensus 229 t~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 229 AKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred hcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence 99999999999999999999999999999999999998764 47999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhcC
Q 016040 376 QARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 376 ~sR~l~~~a~dg~lP~~f~~~ 396 (396)
.+|+++++|+||..||.|+|+
T Consensus 309 tsRmL~~la~~g~APk~~~kl 329 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKL 329 (462)
T ss_pred cchHHHHHhhcCcccHhHhhc
Confidence 999999999999999999874
No 22
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=1.8e-40 Score=322.10 Aligned_cols=306 Identities=26% Similarity=0.363 Sum_probs=255.3
Q ss_pred CcccccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHH
Q 016040 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (396)
Q Consensus 72 ~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 150 (396)
++++||+++.++.++++++.++| |.+...+..+.. +||. .++++++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56689999999999999999997 777776666655 7875 88899999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 151 ~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
.+|+..|++.||.+++.+....+.++..+++++..+++ .. ..+.+.++++++..++|++|+|.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p-~~----------------~~~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFP-VG----------------PGWLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC----------------chhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887765 11 02356677778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCC--------CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCC
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL--------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSR 302 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r 302 (396)
.++++.+..+++++.+++++.....+.+..++ .++.+.++.+++.++..++|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999998887766555443322222221 2344556778888999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHh-cc-hHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 016040 303 DIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQI-GM-NWAKYLVSVCALKGMTTSLLVGSLGQARY 379 (396)
Q Consensus 303 ~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 379 (396)
++||+++.+..++.++|+..........+.+++. .++|+.+++++. ++ .+...++.+..+++.+++.++.+++.+|+
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~ 302 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQ 302 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877666666766664 456888888765 32 45666777777888899999999999999
Q ss_pred HHHHHhcCCCchhhhcC
Q 016040 380 TTQIARAHMIPPWFALA 396 (396)
Q Consensus 380 l~~~a~dg~lP~~f~~~ 396 (396)
+++|||||.+|++|+|+
T Consensus 303 l~a~ardg~lP~~~~~~ 319 (442)
T TIGR00908 303 IFALSRAGYLPESLSKV 319 (442)
T ss_pred HHHHHhcCCccHHHHHh
Confidence 99999999999999874
No 23
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=2.7e-40 Score=323.89 Aligned_cols=303 Identities=18% Similarity=0.235 Sum_probs=253.7
Q ss_pred ccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccc-cccchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~-~Gg~y~~~~~~~g 153 (396)
||+++.+|+.+++++.++|+|++..++..+.. +||. .+++|++++++.++++++++|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58899999999999999999999999999987 8886 7999999999999999999999999995 5567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 016040 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (396)
Q Consensus 154 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 233 (396)
+..|+++||.+|++++...+......+.++..+.+ .. + ......++++++.++|++|+|..++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~--~~~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD------------KV---N--PAVWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------CC---C--HHHHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999999988888887765432 00 0 1123345567788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--ccc-----------cCCCCCCCC----CHHHHHHHHHHHHHHhhchhHHhhhhhh
Q 016040 234 LNWISSIVSSCVIVFVIIVGFVH--GKT-----------TNLDPFLPY----GTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (396)
Q Consensus 234 ~~~~~~~~~i~~~i~~~i~~~~~--~~~-----------~~~~~~~~~----~~~~~~~~~~~~~~~f~G~e~~~~~~~E 296 (396)
++.+.+.++++.++.+++.++.. .+. .+...+.+. .+.+++.++...+|+|.|+|.+++++||
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 99999988887777666544331 110 011123222 2677888999999999999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cc--------cCchHHHHHHHhcchHHHHHHHHHHHHHHH
Q 016040 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTE--ID--------MNAAYSIAFRQIGMNWAKYLVSVCALKGMT 366 (396)
Q Consensus 297 ~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~--~~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (396)
+|||+|++||++..+..++.++|++..++.....|.++ +. ..+|+....+..+.+++..++.+..+++.+
T Consensus 223 ~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 223 AANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL 302 (478)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHH
Confidence 99999999999999999999999998888777777654 21 126887777888888888899999999999
Q ss_pred HHHHHHhhchhHHHHHHHhcCCCchhhhcC
Q 016040 367 TSLLVGSLGQARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 367 ~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~ 396 (396)
++.++++++.+|++++|||||.+|++|+|+
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~ 332 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYV 332 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhh
Confidence 999999999999999999999999999985
No 24
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=3.7e-40 Score=321.97 Aligned_cols=320 Identities=18% Similarity=0.217 Sum_probs=247.4
Q ss_pred ccCcccccccchhHHHHHhhhcc-ccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhh
Q 016040 70 ESKQPLQKCLTWWDLTWLCFGSV-VGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (396)
Q Consensus 70 ~~~~~~~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~ 148 (396)
++++++||+++.++.++++++.+ ++.|++..++..+.. +||..+++|+++++..++++++++|+++++|++||.|+|+
T Consensus 6 g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~ 84 (475)
T TIGR03428 6 GYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWS 84 (475)
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHH
Confidence 38899999999999999999986 689999999999887 8889999999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CC-cccccccccccCCCCCchhHHHHHHHHHHHHHH
Q 016040 149 RVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDS---NN-SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (396)
Q Consensus 149 ~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (396)
++.+||..|+++||.+++++....+........++..+.+. .. ++++. . +...+...++++++++++.++|
T Consensus 85 ~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~in 159 (475)
T TIGR03428 85 RRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLT----S-PSGAANAVLLGSVLLVLTTVIN 159 (475)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccc----C-CCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877776666655555433210 00 01110 0 1111234577778888899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccC---C----CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhh
Q 016040 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTN---L----DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (396)
Q Consensus 225 ~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~ 297 (396)
++|+|..++++.+..+++++.++++++.++...+.+. + .+..+.....++.+.....|+|.|+|.+++++||+
T Consensus 160 ~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~ 239 (475)
T TIGR03428 160 CIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET 239 (475)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh
Confidence 9999999999999999998877777666554432111 1 11112123457778888899999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCchHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHhh
Q 016040 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTE--IDMNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSL 374 (396)
Q Consensus 298 k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (396)
|||+|++||++..++.++.++|.+..+......++.+ ...+++...++. ..+.++.. ++.+.++++.+++.++.+.
T Consensus 240 knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~ 318 (475)
T TIGR03428 240 KNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLAIQT 318 (475)
T ss_pred cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888877766655422 111222223333 44555554 4445667788999999999
Q ss_pred chhHHHHHHHhcCCCc--hhhhcC
Q 016040 375 GQARYTTQIARAHMIP--PWFALA 396 (396)
Q Consensus 375 ~~sR~l~~~a~dg~lP--~~f~~~ 396 (396)
+.+|+++++||||.+| ++|+|+
T Consensus 319 ~~sR~~~a~Ardg~lP~s~~~~~v 342 (475)
T TIGR03428 319 AGSRLMFSMARDGKLPASAQLSRV 342 (475)
T ss_pred HHHHHHHHHHhcCCCcchHHhccc
Confidence 9999999999999999 488874
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=2.8e-40 Score=319.92 Aligned_cols=292 Identities=19% Similarity=0.278 Sum_probs=253.6
Q ss_pred HhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHHHHHHH
Q 016040 87 LCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILL 166 (396)
Q Consensus 87 ~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~ 166 (396)
+++|+++|+|+|..++..++. +||..+++|++++++.++.+++++|+++++|++||.|.|++|.+||..|++.||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578999999999999999887 8888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 016040 167 EAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVI 246 (396)
Q Consensus 167 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~ 246 (396)
.++...+......+.++..+.+ +. ....++.+++++.+.+|++|+|..++++.+++.+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVP------------GI-----PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------cC-----cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 9999888887666666554432 11 134678888889999999999999999999999999988
Q ss_pred HHHHHHhhccc---c----ccCC------CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHH
Q 016040 247 VFVIIVGFVHG---K----TTNL------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (396)
Q Consensus 247 i~~~i~~~~~~---~----~~~~------~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~ 313 (396)
+++++.++... . ..+. .++.|+++.+++.++..++|+|.|+|.+++++||+|||||++||++..+..
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 88776655421 0 1111 123456788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccc--CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 314 MITAVYCLMALALTMMVKYTEIDM--NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 314 ~~~~~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
.+.++|++..++.....|.++.+. ..++..+.+..++++...++.+.++++.+++.++++++.+|++++|||||.+|+
T Consensus 224 ~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 224 RISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999999999888888876543 346667788888899989999999999999999999999999999999999999
Q ss_pred hhhcC
Q 016040 392 WFALA 396 (396)
Q Consensus 392 ~f~~~ 396 (396)
+|+|+
T Consensus 304 ~~~~~ 308 (446)
T PRK10197 304 VMGKI 308 (446)
T ss_pred HHHhh
Confidence 99984
No 26
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-41 Score=312.23 Aligned_cols=326 Identities=17% Similarity=0.213 Sum_probs=273.5
Q ss_pred chhhhhhhhhccCcccccccchhHHHHHhhhcccc-chhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016040 60 DATELITLQQESKQPLQKCLTWWDLTWLCFGSVVG-SGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEI 138 (396)
Q Consensus 60 ~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~ig-~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~ 138 (396)
+++++.+++ +|+++||++++|+.++++++.+-- .|+-......+..+|+|...|+|++++++.++++++++|+++.+
T Consensus 33 d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~ 110 (550)
T KOG1289|consen 33 DEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAM 110 (550)
T ss_pred CHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhC
Confidence 344455555 999999999999999999997632 34444444444453445699999999999999999999999999
Q ss_pred cccccchhhhH----HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHH
Q 016040 139 PVAGGSFSFLR----VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAV 214 (396)
Q Consensus 139 p~~Gg~y~~~~----~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (396)
|.+||.|.|+. +.+|+..++++||...+++....++...+.++.+..... ..+++|. .+......+..
T Consensus 111 PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~-l~np~y~-------~~~~~~~~v~~ 182 (550)
T KOG1289|consen 111 PTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVS-LTNPNYE-------PTNYHQFGVFE 182 (550)
T ss_pred CCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHh-hcCCCCc-------ccceEeehHHH
Confidence 99999999998 578888999999999999999999999999999999987 5555443 44456778999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cccCCCCCCCCCHHHHHHHHHHH
Q 016040 215 LILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG--------------KTTNLDPFLPYGTEGVFEAAAVV 280 (396)
Q Consensus 215 ~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 280 (396)
++.++..++|+.+.|+..+++++..++.++.+++.+|...... +.+|..+|.+.||. ++.++...
T Consensus 183 ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fil~f~~~ 261 (550)
T KOG1289|consen 183 AILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FILGFFNP 261 (550)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HHHhhccc
Confidence 9999999999999999999999999999999888888776532 23344566666666 78889999
Q ss_pred HHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccc-c--cc--CchHHHHHHHhcchHHHH
Q 016040 281 YWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTE-I--DM--NAAYSIAFRQIGMNWAKY 355 (396)
Q Consensus 281 ~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~-~--~~--~~p~~~~~~~~~~~~~~~ 355 (396)
.|.+.|+|+.+|++||+|||+|+.||+++.+..+..++..+..+.+....++|. . ++ .+|+.+++.+.-++-...
T Consensus 262 ~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v 341 (550)
T KOG1289|consen 262 AWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAV 341 (550)
T ss_pred eeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceE
Confidence 999999999999999999999999999999999999999999999888888432 2 22 379999888765555558
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCc--hhhhcC
Q 016040 356 LVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALA 396 (396)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~ 396 (396)
.+..+.++..+.+..+...+.||+.|+.+|||.|| ++++|+
T Consensus 342 ~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v 384 (550)
T KOG1289|consen 342 FLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKV 384 (550)
T ss_pred ehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeec
Confidence 88888899999999999999999999999999999 666654
No 27
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-40 Score=307.33 Aligned_cols=311 Identities=22% Similarity=0.342 Sum_probs=267.3
Q ss_pred cCcccccccchhHHHHHhhhccccchhhhccHHhHhhccCh-H-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhh
Q 016040 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (396)
Q Consensus 71 ~~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~ 148 (396)
++.+++|+++.+..+.+.++.++|+|+|..|..+... +|+ + ++..|++.++++++.++||+|+++.+|++||.|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 4455799999999999999999999999999999988 554 4 888899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhh
Q 016040 149 RVELGDFVAYIAAGNILLEAVV-GAAGLARSWSSY-LASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (396)
Q Consensus 149 ~~~~g~~~g~~~g~~~~~~~~~-~~a~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (396)
.+.+|+..||...|.-++.... ..+..+..+++| +...++ .+..+......++.+++++++++|+.
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp------------~c~~p~~~~~lla~~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP------------LCDVPRVASKLLAAALLVLLTLINSF 152 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC------------CCCCchHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999976666555 559999999999 554443 12223333668899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhccc---cccCCCC--CC--CCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcC
Q 016040 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHG---KTTNLDP--FL--PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKK 299 (396)
Q Consensus 227 g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~---~~~~~~~--~~--~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 299 (396)
++|+..++|.++++.|++.+.++++.++... +.+|+.. +. ..+...+..++...+|+|.|||.....+||+||
T Consensus 153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEikn 232 (479)
T KOG1287|consen 153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN 232 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence 9999999999999999999999999998743 3333221 11 123456788899999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 016040 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSI-AFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (396)
Q Consensus 300 p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 378 (396)
|+||+|||+..++.++++.|++..++.+.+++.|++...+..+. ..++.+|.+. +++.+...++++++.++.+.+.||
T Consensus 233 P~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 233 PRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred ccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999998865555544 4556777777 899999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhc
Q 016040 379 YTTQIARAHMIPPWFAL 395 (396)
Q Consensus 379 ~l~~~a~dg~lP~~f~~ 395 (396)
+++++||+|.||..|+.
T Consensus 312 ~~~~~areG~LP~~~s~ 328 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSM 328 (479)
T ss_pred HHHHHHHccCccHHHHh
Confidence 99999999999998875
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=3.4e-39 Score=314.66 Aligned_cols=307 Identities=20% Similarity=0.326 Sum_probs=255.2
Q ss_pred cccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccc-ccchhhhHHHhch
Q 016040 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVA-GGSFSFLRVELGD 154 (396)
Q Consensus 77 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~-Gg~y~~~~~~~g~ 154 (396)
|++++++++++.+++++|+|+|..|+..... +||. .+++|+++++..++++++++|+++++|++ ||.|.|.++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 6899999999999999999999999998876 7776 88899999999999999999999999986 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 016040 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (396)
Q Consensus 155 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 234 (396)
..|++.||.+|+++......+......++..+++... ...+.....+..++++++.++|++|+|..+++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----------GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999887776666666666655544100 00111123456677778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCCC---------C-CCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCCh
Q 016040 235 NWISSIVSSCVIVFVIIVGFVHGKTTNLDP---------F-LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (396)
Q Consensus 235 ~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~ 304 (396)
+.+.+.+|++.++++++.++...+.+++.. + .+..+.++..++...+|+|.|+|.+++++||.|| +||+
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccc
Confidence 999999999988887776654322222110 0 1122456677888999999999999999999998 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-Cch-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 016040 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (396)
Q Consensus 305 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (396)
||++..+..++.++|++..+......|.+++.+ ++| ...++++..++++..++.+..+++.+++.++++...+|++++
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888877643 345 667777888889999999999999999999999999999999
Q ss_pred HHhcCCCchhhhcC
Q 016040 383 IARAHMIPPWFALA 396 (396)
Q Consensus 383 ~a~dg~lP~~f~~~ 396 (396)
|||||.+|++|+|+
T Consensus 308 ~ardg~lP~~f~k~ 321 (468)
T TIGR03810 308 MAKDKLMPKYFGKE 321 (468)
T ss_pred HHhCCCccHHHHhh
Confidence 99999999999984
No 29
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=7e-38 Score=307.05 Aligned_cols=319 Identities=16% Similarity=0.198 Sum_probs=248.0
Q ss_pred ccCcccccccchhHHHHHhhhccc-cchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhh
Q 016040 70 ESKQPLQKCLTWWDLTWLCFGSVV-GSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSF 147 (396)
Q Consensus 70 ~~~~~~~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~ 147 (396)
++++++||+++.++.++++++.+. ..|++...+..... +||. .+++|++++++.++++++++|+++++|++||.|+|
T Consensus 5 g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~ 83 (482)
T TIGR00907 5 GYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFW 83 (482)
T ss_pred CCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 378889999999999999999653 26777777666655 7884 89999999999999999999999999999999999
Q ss_pred hHHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHH
Q 016040 148 LRVELG----DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (396)
Q Consensus 148 ~~~~~g----~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (396)
+++.+| +..+|++||.+++.+....+......+.++..... ...+. +.+..+.+....+.++++++++++
T Consensus 84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVS-LTTPG-----REYIPTRWHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC-----CCccccCchhhhhHHHHHHHHHHH
Confidence 999876 57799999999999999999888888888876654 21111 001122233456777788889999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccc---------cCCC----CCCCCCHHHHHHHHHHHHHHhhchhHH
Q 016040 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKT---------TNLD----PFLPYGTEGVFEAAAVVYWSYTGFDMV 290 (396)
Q Consensus 224 ~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~f~G~e~~ 290 (396)
|++|.|..++++++..+++++.++++++..+...+. +++. ++.+.++ +++.++..+.|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 999999999999999988888777555544432211 1111 1223333 4667777889999999999
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccc-cc--CchHHHHHHH-hcchHHHHHHHHHHHHHH
Q 016040 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVK-YTEI-DM--NAAYSIAFRQ-IGMNWAKYLVSVCALKGM 365 (396)
Q Consensus 291 ~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~-~~~~-~~--~~p~~~~~~~-~~~~~~~~~~~~~~~~~~ 365 (396)
++++||+|||+|++|||+..++.+..+++++..+......+ .+++ +. .+|+..++.. .+.++...++.+.++++.
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTS 316 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998887766665555444333 2222 21 2588887775 466577777888888999
Q ss_pred HHHHHHHhhchhHHHHHHHhcCCCc--hhhhcC
Q 016040 366 TTSLLVGSLGQARYTTQIARAHMIP--PWFALA 396 (396)
Q Consensus 366 ~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~ 396 (396)
+++.++++++.||++++|||||.+| ++|+|+
T Consensus 317 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v 349 (482)
T TIGR00907 317 FFCAITCMTANSRMIYAFSRDGGLPFSPLWSRV 349 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCchHhhcee
Confidence 9999999999999999999999999 999884
No 30
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=1.1e-37 Score=301.66 Aligned_cols=302 Identities=25% Similarity=0.476 Sum_probs=257.8
Q ss_pred cchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHH-HHHHHHHhhhhhcccccccchhhhHHHhchhHH
Q 016040 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (396)
Q Consensus 79 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~-~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 157 (396)
+++++.+++.++.++|+|++..+ .... +|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||..|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~-~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAAS-AGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTC-TGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58999999999999999998877 3334 7888888888888887 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 016040 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWI 237 (396)
Q Consensus 158 ~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~ 237 (396)
++.+|.+++.+....+......++++...++ ++...+.+...++++++++++..+|++|.|..+|++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFG-----------PDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT-----------GGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccc-----------cccccccchheeeeecccccceEeeechhhhhhhhhhh
Confidence 9999999999999999998889998887765 11112222356788899999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHhhccccccCC-------CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHH
Q 016040 238 SSIVSS-CVIVFVIIVGFVHGKTTNL-------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309 (396)
Q Consensus 238 ~~~~~i-~~~i~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~ 309 (396)
...+++ ..++++++.++...+.+.. ..+.+.++.+++.++...+|+|.|+|.+++++||+|| ||+||++.
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~ 224 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecc
Confidence 999999 5666666666664432211 2345556667889999999999999999999999777 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCc----hHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHh
Q 016040 310 GSMCMITAVYCLMALALTMMVKYTEIDMNA----AYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (396)
Q Consensus 310 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 385 (396)
.+.+++.++|++..++.....|+++....+ +...+++..+++++..++.+..+++.+++.++++.+.+|++++|+|
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 999999999999999999999998875432 5667888888889999999999999999999999999999999999
Q ss_pred cCCCchhhhcC
Q 016040 386 AHMIPPWFALA 396 (396)
Q Consensus 386 dg~lP~~f~~~ 396 (396)
||.+|++|+|+
T Consensus 305 d~~lP~~~~~~ 315 (426)
T PF13520_consen 305 DGVLPKWFAKV 315 (426)
T ss_dssp TTSSSGGGGTT
T ss_pred ccchhhhhhhc
Confidence 99999999985
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=2.2e-36 Score=310.88 Aligned_cols=316 Identities=15% Similarity=0.179 Sum_probs=252.0
Q ss_pred cccccccchhHHHHHh-hhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhc-ccccccchhhhH
Q 016040 73 QPLQKCLTWWDLTWLC-FGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVE-IPVAGGSFSFLR 149 (396)
Q Consensus 73 ~~~~r~l~~~~~~~~~-~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~-~p~~Gg~y~~~~ 149 (396)
...+|++++++.+.+- +++++|+|+|..++.+... +|.. +++.|++++++++++++|++|++++ +|++||.|.|++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yis 150 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLIS 150 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3456899999999987 9999999999999999887 7766 8889999999999999999999998 999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 016040 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (396)
Q Consensus 150 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 229 (396)
|.+|+.+|+.+||.+++++.+..+.++.++++++..+++ ..... .. ....+...+++.+++++++++|+.|+|
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~-~~~~~--~~----~~~~~~~~iia~i~l~ll~~In~~Gvk 223 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLR-ENGSK--IM----VDPINDIRIYGTVTVVVLLGISFAGME 223 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccc--cc----cCccccchHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999875 11100 00 011112347888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccc---------------cCCCCCCCCCHHHHHHHHHHHHHHhhchhHHhhhh
Q 016040 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKT---------------TNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA 294 (396)
Q Consensus 230 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~ 294 (396)
+.+|++.++++++++.++.+++.++..... .|+.+-.+.+..++...+...+++|.|+|+.++++
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~s 303 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANIS 303 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888877766542110 01111112222336666777788999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-Cc------------------hHHHH----HH-Hhcc
Q 016040 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NA------------------AYSIA----FR-QIGM 350 (396)
Q Consensus 295 ~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~------------------p~~~~----~~-~~~~ 350 (396)
+|+|||+|++|||++.++.+++++|++..+++....+.+.... +. |.... +. ....
T Consensus 304 gElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~ 383 (953)
T TIGR00930 304 GDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLV 383 (953)
T ss_pred HhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhh
Confidence 9999999999999999999999999999988777776543221 00 11011 11 0111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCc--hhhhcC
Q 016040 351 NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALA 396 (396)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~ 396 (396)
.+...++.++++++++++.++++++.+|++++|||||.+| ++|+|+
T Consensus 384 ~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv 431 (953)
T TIGR00930 384 SPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKG 431 (953)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhccc
Confidence 2245788889999999999999999999999999999999 889874
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-36 Score=292.32 Aligned_cols=315 Identities=29% Similarity=0.470 Sum_probs=271.3
Q ss_pred cCcccccccchhH-HHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhH
Q 016040 71 SKQPLQKCLTWWD-LTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (396)
Q Consensus 71 ~~~~~~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~ 149 (396)
++++++|+++.++ ...+..+.++|.|++..++..... + +...++|++++++..+.+++++|+++++|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 3456789999999 888999999999999999988665 4 555555999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 016040 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (396)
Q Consensus 150 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 229 (396)
+.+|+..++.++|.+++.+....+......+.++..+++ ... ...........++.+++++..++|++|+|
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~ln~~G~~ 154 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFP-GPG--------LLSIGPLLIILIALALIALLTLLNLRGIK 154 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cch--------hhcCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999998888776 111 00111134568889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC---C--CCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCCh
Q 016040 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF---L--PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (396)
Q Consensus 230 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~ 304 (396)
...+++.+...++++.++++.+.++...+.++.... . ...+..++.++...+|+|.|+|.+++++||+|||+|++
T Consensus 155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 155 ASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 999999999999999999999888876655432211 1 12345688889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccC---chHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 016040 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN---AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (396)
Q Consensus 305 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (396)
||+++.+.+++.++|++..++.....+.+++... .|.....+...+.++..++.+....+.+++.+++..+.+|.++
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887655433 6888888877778999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhcC
Q 016040 382 QIARAHMIPPWFALA 396 (396)
Q Consensus 382 ~~a~dg~lP~~f~~~ 396 (396)
+|+|||.+|++|+|+
T Consensus 315 ~~ardg~lP~~~~~~ 329 (466)
T COG0531 315 AMARDGLLPKFFAKV 329 (466)
T ss_pred HHHhCCCccHHHHHh
Confidence 999999999999874
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.9e-37 Score=302.42 Aligned_cols=298 Identities=26% Similarity=0.448 Sum_probs=253.6
Q ss_pred HHHHhhhccccchhhhccHHhHhhccCh-HHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHHH
Q 016040 84 LTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG 162 (396)
Q Consensus 84 ~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~ 162 (396)
+.+++++.++|.|++...+..... +|+ ..++++++++++.++++++++|+++++|++||.|.|++|.+|+..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 446788999999999999998887 777 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 016040 163 NILLEAVVGAAGLARSWSSYLASM--IDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSI 240 (396)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~ 240 (396)
.+|+.++...+......+.++..+ .. +.+..+....++..++++++..+|++|+|..++++.++..
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~ 148 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFP------------GLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTI 148 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccc------------cccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHH
Confidence 999999999999988888777665 22 1110110001457788888999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hc-cc--cccCC---------CCCCCCC--------HHHHHHHHHHHHHHhhchhHHhhhhhhhcC
Q 016040 241 VSSCVIVFVIIVG-FV-HG--KTTNL---------DPFLPYG--------TEGVFEAAAVVYWSYTGFDMVATMAEETKK 299 (396)
Q Consensus 241 ~~i~~~i~~~i~~-~~-~~--~~~~~---------~~~~~~~--------~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~ 299 (396)
++++.++.+++.+ +. .. ++.+. .+..+++ +.+++.++..++++|.|+|.++..+||+||
T Consensus 149 i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~ 228 (478)
T PF00324_consen 149 IKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKN 228 (478)
T ss_pred HhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCC
Confidence 9999998888877 32 11 11111 1123333 788999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccC------chHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh
Q 016040 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN------AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGS 373 (396)
Q Consensus 300 p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (396)
|||++|||+..++...+++|++..++.....|.++.... +|+..+.+..+++++..++.+..+.+.+++.++.+
T Consensus 229 P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 229 PRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred chhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhh
Confidence 999999999999999999999999999999988875422 48888999999999999999999999999999999
Q ss_pred hchhHHHHHHHhcCCCc-hhhh
Q 016040 374 LGQARYTTQIARAHMIP-PWFA 394 (396)
Q Consensus 374 ~~~sR~l~~~a~dg~lP-~~f~ 394 (396)
+..||++++|+|||.+| ++++
T Consensus 309 ~~~sR~l~ama~dg~lP~~~~~ 330 (478)
T PF00324_consen 309 YAASRLLYAMARDGLLPKKFFA 330 (478)
T ss_pred cccceeehhhhhhhhhhhhhhh
Confidence 99999999999999999 5444
No 34
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=1.2e-33 Score=276.15 Aligned_cols=308 Identities=18% Similarity=0.272 Sum_probs=224.7
Q ss_pred cccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHH-HHHHHHHhhhhhcccccccchhhhHHHhchh
Q 016040 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (396)
Q Consensus 77 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~-~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~ 155 (396)
|+++.++++.+.+..+.+.... +.. +. .|+..++.|++++++. ++.+++++|+++++|++||.|.|+++.+|+.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~--~~~--a~-~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL--PAE--AE-YGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc--hHH--HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 4699999999998877653322 322 23 7788888899999876 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 016040 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLN 235 (396)
Q Consensus 156 ~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 235 (396)
+|++.+|.+|+++....+......+..+....+ ... . .+....+.+....+.++++++++++|++|+|..++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~-~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGP-EAT--V---DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccc--c---CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999987665544333333332221 100 0 0111122222334566677788899999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhcc---cccc--C--CCCCCCC--CHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChh
Q 016040 236 WISSIV-SSCVIVFVIIVGFVH---GKTT--N--LDPFLPY--GTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305 (396)
Q Consensus 236 ~~~~~~-~i~~~i~~~i~~~~~---~~~~--~--~~~~~~~--~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 305 (396)
.+...+ +++.++++++.++.. ++.. + +.++.|+ ++..+..+ ...+|+|.|+|.++.++||+|||+|++|
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchh
Confidence 876544 344444444443321 1111 0 1112222 23333322 2457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCch----HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 016040 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAA----YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (396)
Q Consensus 306 ~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (396)
||+..+..+++++|++..+++....|+++....++ +.+..+..+.++...++.+...++.+++.++++.+.+|+++
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988889887754433 33444555667777888888888999999999999999999
Q ss_pred HHHhcCCCchhhhcC
Q 016040 382 QIARAHMIPPWFALA 396 (396)
Q Consensus 382 ~~a~dg~lP~~f~~~ 396 (396)
+++|||.+|++|+|+
T Consensus 309 a~ardg~lP~~~~kv 323 (474)
T TIGR03813 309 AVAKAGYLPTFFQKT 323 (474)
T ss_pred HHhhcCCCCHHHhcc
Confidence 999999999999985
No 35
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=5.9e-33 Score=272.01 Aligned_cols=306 Identities=16% Similarity=0.227 Sum_probs=219.9
Q ss_pred ccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHH-HHHHHHHHhhhhhccc-ccccchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLS-ALLSAFCYTEFAVEIP-VAGGSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~-~~~~~~~~~el~~~~p-~~Gg~y~~~~~~~g 153 (396)
+|+++.++++++.++.+. ++...|. .+. .|...+..+++++++ .++.+++++||++++| .+||.|.|+++.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~--~a~-~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT--FAT-SGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH--HHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 677999999999998876 3443343 223 677766667776665 6889999999999997 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 016040 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (396)
Q Consensus 154 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 233 (396)
+.+|++.+|.+|+......+............... . +....+.+...+..++++++++++|++|.|..++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~---------~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~ 147 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-F---------PALNEDPIIKFIAALIIFWALAFSQFGGTKRTAK 147 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------chhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999998876554443322222232222 1 1111222223455567778899999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhc---ccccc----CCCCCCCCC-HHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCCh
Q 016040 234 LNWISSIVSSCV-IVFVIIVGFV---HGKTT----NLDPFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (396)
Q Consensus 234 ~~~~~~~~~i~~-~i~~~i~~~~---~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~ 304 (396)
++++..+..++. ++++++.++. .+++. +..++.|.. ..+.+..+...+|+|.|+|.+++++||+|||+|++
T Consensus 148 i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~ 227 (507)
T TIGR00910 148 IAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDY 227 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccc
Confidence 998866544333 3333332222 11111 111232221 12234455556899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchH----HHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 016040 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAY----SIAFRQIG--MNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (396)
Q Consensus 305 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 378 (396)
|||++.+++++.++|.+..+++....|++++...++. ..+....+ ..++..++.+.++++.+++.++++++.+|
T Consensus 228 PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR 307 (507)
T TIGR00910 228 PLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSR 307 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887777888876544332 23333333 25677788888899999999999999999
Q ss_pred HHHHHHhcCCCchhhhcC
Q 016040 379 YTTQIARAHMIPPWFALA 396 (396)
Q Consensus 379 ~l~~~a~dg~lP~~f~~~ 396 (396)
+++++||||.+|++|+|+
T Consensus 308 ~l~~~ardg~lP~~~~k~ 325 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKM 325 (507)
T ss_pred HHHHhcccCCcCHHHHhh
Confidence 999999999999999984
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.9e-31 Score=261.85 Aligned_cols=314 Identities=15% Similarity=0.233 Sum_probs=218.8
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHH-HHHHHHHHhhhhhcccc-cccchhhhHHHh
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLS-ALLSAFCYTEFAVEIPV-AGGSFSFLRVEL 152 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~-~~~~~~~~~el~~~~p~-~Gg~y~~~~~~~ 152 (396)
.+|+++++++..+.++.++|.+.. +..... +|+..++.+++++++ .++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~---~~~~~~-~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS---PRAFYL-MGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch---HHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 478899999999999999986532 333334 788765656666655 67899999999999997 899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSS-YLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 231 (396)
|+.+|++.+|.+|.+++............ .....++......+... +. ..+.....++++++++++++|.+|+|..
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL--GL-NSTQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh--cc-cchHHHHHHHHHHHHHHHHHHccchHHH
Confidence 99999999999888887765443322111 11111220111111100 01 1111123455666668999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHhhccc-cccCC---CCCC---CCCH---HHHHHHHHHHHHHhhchhHHhhhhhhh
Q 016040 232 SWLNWISSIVSSCVIVFVI----IVGFVHG-KTTNL---DPFL---PYGT---EGVFEAAAVVYWSYTGFDMVATMAEET 297 (396)
Q Consensus 232 ~~~~~~~~~~~i~~~i~~~----i~~~~~~-~~~~~---~~~~---~~~~---~~~~~~~~~~~~~f~G~e~~~~~~~E~ 297 (396)
.+++++.+.+++...++++ +..+... +..+. .++. ..++ .+++.++..+.|+|.|+|..++++||+
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 237 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKT 237 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 9999988776654322221 1111111 11111 1111 1111 357777888999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-------CchHHHHHHHh-----------------cchHH
Q 016040 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-------NAAYSIAFRQI-----------------GMNWA 353 (396)
Q Consensus 298 k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-------~~p~~~~~~~~-----------------~~~~~ 353 (396)
|||||++||++..+..+++++|++..+.+....|.++... ..|+. ..+.. .+.++
T Consensus 238 ~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~ 316 (496)
T PRK15238 238 ENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWF 316 (496)
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHH
Confidence 9999999999999999999999999888877777665532 12222 12211 12455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCchhhhcC
Q 016040 354 KYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~ 396 (396)
..++.+..+.+.+++.+++.++.+|.++.+++||.+||+|+|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~ 359 (496)
T PRK15238 317 ARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKL 359 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhh
Confidence 5577788899999999999999999999999999999999984
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.94 E-value=1.5e-24 Score=206.66 Aligned_cols=285 Identities=13% Similarity=0.057 Sum_probs=232.5
Q ss_pred HHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHHHHHH
Q 016040 86 WLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIL 165 (396)
Q Consensus 86 ~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~ 165 (396)
.+.+++++|+|++..|...... +++..++..+++++.+...+++++|+.+++|+++|.|+|.++.+||..+++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567899999999999987654 555567778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 016040 166 LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCV 245 (396)
Q Consensus 166 ~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~ 245 (396)
+......+.+....+.++..+++..... + ....+..+++.+++..++++|.|...|++.+++..+++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~-------~-----~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGF-------P-----WSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCC-------C-----ccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 9988888888888888887776511100 0 113356677777888999999999999999999999999
Q ss_pred HHHHHHHhhccccccCCCCCC--CCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHH
Q 016040 246 IVFVIIVGFVHGKTTNLDPFL--PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMA 323 (396)
Q Consensus 246 ~i~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~ 323 (396)
++++++.++.+.+.+|+.+.. +.++.++..++...+++|...+....+.+|+++++|++||+++.+..+..++|++..
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~ 230 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQ 230 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888776766655432 235677788888888888433468888999987789999999999999999999999
Q ss_pred HHHHhhcccccccc-------CchHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 016040 324 LALTMMVKYTEIDM-------NAAYSIAFRQ-IGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (396)
Q Consensus 324 ~~~~~~~~~~~~~~-------~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 383 (396)
.+.....|.+++.+ .+++....+. .++++...++.+...+++.++.+++..+.++.+..+
T Consensus 231 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~ 298 (381)
T TIGR00837 231 LATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADL 298 (381)
T ss_pred HHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888641 1455666664 577788889999999999999999988888776644
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.93 E-value=1.3e-23 Score=198.69 Aligned_cols=290 Identities=15% Similarity=0.158 Sum_probs=238.6
Q ss_pred cccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhH
Q 016040 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFV 156 (396)
Q Consensus 77 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~ 156 (396)
++++.+|..++.++.++|+|++..|+...+. +|+.+|++++++++..++.+++++|+.+++|+. +.++|.++.+||..
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKIL 78 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHH
Confidence 3689999999999999999999999988776 888899999999999999999999999999987 59999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 016040 157 AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNW 236 (396)
Q Consensus 157 g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~ 236 (396)
|++.+|.+++......+......++++..... |++ ...++.+.+++++.+.+..|+|..+|++.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~t-----p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 79 GRLLSILFILYFFLIAAYLIRIFADFIKTYLL-----------PRT-----PIIVIIILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCC-----CHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 99999999988888888888888888876543 111 13467778888889999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHhhccccccCCCCCCCCCHHHHHHHHH-HHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHH
Q 016040 237 ISSIVSSCV-IVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAA-VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCM 314 (396)
Q Consensus 237 ~~~~~~i~~-~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~ 314 (396)
++..+.++. ++++........+++|..|..+.++..++.+.. ...|+|.|+|......+|+|||| +.||++..+..+
T Consensus 143 i~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~-~~~k~~~~~~~~ 221 (359)
T TIGR00912 143 ILLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK-KIKKSIIKAIII 221 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh-hhHHHHHHHHHH
Confidence 999888776 344444444455677888888888888888887 88999999999999999999975 699999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccc-CchHHHHHHHhcch-HHH---HHHHHHHHHHHHHHHHHHhhchhHHHHHHHh
Q 016040 315 ITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMN-WAK---YLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (396)
Q Consensus 315 ~~~~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 385 (396)
++++|++..++.....+.++... ..|..+..+....+ ... .++......+.+.....+++..++.+..+-+
T Consensus 222 ~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~ 297 (359)
T TIGR00912 222 GVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFK 297 (359)
T ss_pred HHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999887754 46888888855322 333 3444455566666666778888888776643
No 39
>PHA02764 hypothetical protein; Provisional
Probab=99.85 E-value=1.7e-19 Score=156.82 Aligned_cols=271 Identities=13% Similarity=0.124 Sum_probs=175.3
Q ss_pred cCcccccccchhHHHHHhhhccc-cchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhH
Q 016040 71 SKQPLQKCLTWWDLTWLCFGSVV-GSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (396)
Q Consensus 71 ~~~~~~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~ 149 (396)
+..++-|+.+.+|.++..++.+. |.++ ..+........|...+++|+++++++++.+++++|+++++|++||.|.|.+
T Consensus 6 eSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYIS 84 (399)
T PHA02764 6 KSSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIR 84 (399)
T ss_pred hcCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhH
Confidence 56779999999999999998774 3322 112222122255568899999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 016040 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (396)
Q Consensus 150 ~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 229 (396)
|.+|+..|++.||..|+.+....+..+-.... + +. . .+.+. ...+ ..-......+-..|.|
T Consensus 85 RAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~---~-~~-i-~~~~~------------~f~~-~~s~~~i~~~i~~~~~ 145 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLTYVLSQPILGDLVLL---N-FN-I-QNQFE------------QFLI-VESLFPIVLLIIANKK 145 (399)
T ss_pred HhhCccHHHHHHHHHHHHHHhhcchhhheeee---e-ee-e-HHHHH------------HHHH-HHHHHHHHHHHHcccH
Confidence 99999999999999999988887665432210 0 00 0 00010 0011 1111222233345677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--CCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHH
Q 016040 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIG 307 (396)
Q Consensus 230 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a 307 (396)
..+|...++.....+ +..+...+.-|+. .+.-+ ...+.+...-.-+|.=.++..++++|.||-+|....+
T Consensus 146 ~~~~~v~il~~a~~i------~aif~~~~s~n~~~~~f~~s--nt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~g 217 (399)
T PHA02764 146 IYAKIVDILAIAQII------IAIFIAFKSFNFQYQNFTIS--NTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIG 217 (399)
T ss_pred HHHHHHHHHHHHHHH------HHHHhhccceeEEEcceeeh--HHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhh
Confidence 778777765544433 1212222222221 22111 2355566666677777899999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 016040 308 LVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (396)
Q Consensus 308 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 387 (396)
...+...+.++-++-+ + . + + .++.+.+....++-.....-..||+.++|+.|+
T Consensus 218 yf~s~~~~~~~~ii~s--------y---~--n-~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~ 270 (399)
T PHA02764 218 YFVSYGIVAILSIIDS--------Y---S--N-L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDK 270 (399)
T ss_pred hHHHHHHHHHHHHHHh--------h---h--h-H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhh
Confidence 7777766665554332 0 0 0 0 112222344445555555567899999999999
Q ss_pred CCchhhhcC
Q 016040 388 MIPPWFALA 396 (396)
Q Consensus 388 ~lP~~f~~~ 396 (396)
.+|+.|+|.
T Consensus 271 ~lpe~f~k~ 279 (399)
T PHA02764 271 VLPEKFSKI 279 (399)
T ss_pred hchHHHhcc
Confidence 999999874
No 40
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.83 E-value=5.3e-18 Score=160.19 Aligned_cols=287 Identities=13% Similarity=0.126 Sum_probs=218.2
Q ss_pred hHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHH----hhhhhcccc-cccchhhhHHHhchhH
Q 016040 82 WDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCY----TEFAVEIPV-AGGSFSFLRVELGDFV 156 (396)
Q Consensus 82 ~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~----~el~~~~p~-~Gg~y~~~~~~~g~~~ 156 (396)
+..+...+++++|+|++..|... |...|+.++++++++++..+.+ .|.....|. ..+.++++++.+||..
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~a-----g~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~ 80 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQA-----GLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNW 80 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHH
Confidence 44566788889999999999863 2234666666666666655554 444434443 5579999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 016040 157 AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNW 236 (396)
Q Consensus 157 g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~ 236 (396)
|.+.++.|++........++...++.+.+++... ...+.+...+..++++++..+++..|.|...|++.
T Consensus 81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~-----------~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~ 149 (397)
T TIGR00814 81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQ-----------LGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMG 149 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 9999999999999998888888888877776510 01111123456777777778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCC--CCCCCCHHHHHHHHHHHHHHhhchhHHhhhh----hhhcCC---CCChhHH
Q 016040 237 ISSIVSSCVIVFVIIVGFVHGKTTNLD--PFLPYGTEGVFEAAAVVYWSYTGFDMVATMA----EETKKP---SRDIPIG 307 (396)
Q Consensus 237 ~~~~~~i~~~i~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~----~E~k~p---~r~~p~a 307 (396)
++...+++.++++.+..+.+.+.+|.. +.....+..++.++...+|+|.|+|..++++ +|.+|| +|+..|+
T Consensus 150 il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~ 229 (397)
T TIGR00814 150 PLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRI 229 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHH
Confidence 999999999999998888888877774 3223356778999999999999999999998 666654 4678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccc----C-chHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 016040 308 LVGSMCMITAVYCLMALALTMMVKYTEIDM----N-AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (396)
Q Consensus 308 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (396)
+..+..+..++|+...+++....++++... + +.+..+.+...+++...+..+...++..++.++...+....+..
T Consensus 230 i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~ 309 (397)
T TIGR00814 230 MKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNG 309 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999998887532 1 23333444667777777777777777777777777776666666
Q ss_pred HH
Q 016040 383 IA 384 (396)
Q Consensus 383 ~a 384 (396)
+.
T Consensus 310 l~ 311 (397)
T TIGR00814 310 IV 311 (397)
T ss_pred HH
Confidence 55
No 41
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.82 E-value=4e-17 Score=151.66 Aligned_cols=288 Identities=15% Similarity=0.179 Sum_probs=244.5
Q ss_pred ccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHH
Q 016040 78 CLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (396)
Q Consensus 78 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 157 (396)
|+|..|...+.+..++|.+++..|...... +| .+|++.+++++..+...+.+..+.+++|+.. .+++.++.+||+.|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHHH
Confidence 578999999999999999999999998877 56 8899999999999999999999999999875 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 016040 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWI 237 (396)
Q Consensus 158 ~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~ 237 (396)
.+.+..+.+.+....+.....+++.+...+. |+++ ..++...+++.+.+....|.+..+|...+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l-----------p~TP-----~~~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLL-----------PETP-----IWVIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CcCC-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999998765 1222 45777888889999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHHHHH
Q 016040 238 SSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITA 317 (396)
Q Consensus 238 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~ 317 (396)
...+.++.++.+.+......+++|..|..+.|+..++.+.....+.|.|.|....+.+.+|||+| ..|....+..++++
T Consensus 142 ~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~k~~~~~~~~~~~ 220 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK-LKKSLLIAILISGL 220 (320)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999999999999999999999999854 78999999999999
Q ss_pred HHHHHHHHHHhhcccccccc-CchHHHHHHHhcc-hHHH---HHHHHHHHHHHHHHHHHHhhchhHHHHHHHh
Q 016040 318 VYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGM-NWAK---YLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (396)
Q Consensus 318 ~y~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 385 (396)
++.+..+....+.+.+.... .-|..+..+...- +... .++......+.+.....++++.++.+..+-+
T Consensus 221 ~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~ 293 (320)
T PF03845_consen 221 FLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFK 293 (320)
T ss_pred HHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999888888776543 4588877774422 2222 3444455556666666777777877766554
No 42
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.79 E-value=2.8e-16 Score=148.84 Aligned_cols=294 Identities=16% Similarity=0.156 Sum_probs=241.3
Q ss_pred cccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchh
Q 016040 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (396)
Q Consensus 77 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~ 155 (396)
|+-+.+...++.+|+.+|.|++..|..... .|.. ..+..++++.+....++.++|.+.+.|+..+.-+.+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~--~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG--AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 345678889999999999999999998743 5543 7777889999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 016040 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLN 235 (396)
Q Consensus 156 ~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 235 (396)
.+++.+..+++........+....++.+..+++..... .........++.+++..+.+.|.|...|++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~------------~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n 146 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT------------DLSPWLSSLLFTIIFGGIVYFGTKAVDRIN 146 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998888888899999999999888711100 111235556666777777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCCC--CCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHH
Q 016040 236 WISSIVSSCVIVFVIIVGFVHGKTTNLDPF--LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (396)
Q Consensus 236 ~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~ 313 (396)
+.+.+.+++.++++.+.++.+.+.++.... .+..+...+..+...+++|.-...++.+....++-+|+++|++..+..
T Consensus 147 ~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~ 226 (394)
T PF03222_consen 147 RVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHH
Confidence 999999999999999999988888776542 235678888999999999999999999999999767889999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccc----cC---chHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 016040 314 MITAVYCLMALALTMMVKYTEID----MN---AAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (396)
Q Consensus 314 ~~~~~y~~~~~~~~~~~~~~~~~----~~---~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (396)
+..++|++..+++....|.++.. .+ .+.....+ ..++++...+..+...++..++.++...+....+...-
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 305 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLF 305 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888877642 12 24444444 45678888888888889999999888888777766554
No 43
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.79 E-value=9.8e-19 Score=165.77 Aligned_cols=306 Identities=17% Similarity=0.163 Sum_probs=226.9
Q ss_pred ccchhHHHHHhhh-ccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccc-ccccchhhhHHHhch
Q 016040 78 CLTWWDLTWLCFG-SVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVELGD 154 (396)
Q Consensus 78 ~l~~~~~~~~~~~-~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p-~~Gg~y~~~~~~~g~ 154 (396)
+++.++.++.=.. +|..+=+|...+.+... +|.. .+.-++++..+.+++.++...+++.-- +.||.|..++|.+|+
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 6777766543222 23344456667777655 6655 677788888888889999999999877 777999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 016040 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (396)
Q Consensus 155 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 234 (396)
.+|--+|..+++++++.++.++..+.+-+.+.++ .+...- -....+++.+|+..+.+..+..++..+.+.|...++|.
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG-~~a~g~-sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAka 222 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFG-KEAQGA-SGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKA 222 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcC-ccccCC-cccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 9999999999999999999999999998888877 322110 11134678888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCC------------------CCC-----------------CCCHHHHHHHHHH
Q 016040 235 NWISSIVSSCVIVFVIIVGFVHGKTTNLD------------------PFL-----------------PYGTEGVFEAAAV 279 (396)
Q Consensus 235 ~~~~~~~~i~~~i~~~i~~~~~~~~~~~~------------------~~~-----------------~~~~~~~~~~~~~ 279 (396)
..+.+....+.+..+.+..++.+..++.. ++. ..+...|-..+..
T Consensus 223 s~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV 302 (945)
T KOG1288|consen 223 SNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGV 302 (945)
T ss_pred hhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhhee
Confidence 98887766666665555544433222111 110 0111234444555
Q ss_pred HHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHHH
Q 016040 280 VYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSV 359 (396)
Q Consensus 280 ~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 359 (396)
.+-.-.|.-+.++|++|.|+|.|.+||+.+.++....+.|++..+......|...+.++-- +++.+. .-..++.+
T Consensus 303 ~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~---v~~~is--l~p~fi~i 377 (945)
T KOG1288|consen 303 FFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD---VMMHIS--LHPPFILI 377 (945)
T ss_pred eeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchh---heeecc--ccchHHHH
Confidence 5666789999999999999999999999999999999999999999988888765554321 122111 11244566
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 360 CALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 360 ~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
+++.+.+.+.++.+.+++|+|.++|||.++|.
T Consensus 378 Gi~sttlfss~s~liGasrvL~alakD~lfg~ 409 (945)
T KOG1288|consen 378 GILSTTLFSSMSGLIGASRVLEALAKDDLFGG 409 (945)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcccchh
Confidence 67777777888889999999999999999994
No 44
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.73 E-value=5.7e-15 Score=140.91 Aligned_cols=290 Identities=14% Similarity=0.070 Sum_probs=234.1
Q ss_pred ccccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccc-cchhhhHHH
Q 016040 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVE 151 (396)
Q Consensus 74 ~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~G-g~y~~~~~~ 151 (396)
..+++.+....+...+++++|+|++..|... ..+|-. .+...++++.++....+++.|...+.|+.. +..+-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 3467788899999999999999999999876 326655 788899999999999999999999999884 899999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhH
Q 016040 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (396)
Q Consensus 152 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 231 (396)
+||.++++.+..+.+.......++....++.+...++. .+. .+.....+..+++......+.+.|.+..
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~----~~~-------~~~~~r~~~~lif~~~~~~l~~~~~~~~ 150 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGN----QFG-------LNPLPRKLGSLIFALVLAFLSWLGTLAV 150 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHh----hcc-------cCCcchHHHHHHHHHHHHHHHHhchhHH
Confidence 99999999999999999999999999999999988872 111 1102355677777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC--C-CCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCC-hhHH
Q 016040 232 SWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF--L-PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD-IPIG 307 (396)
Q Consensus 232 ~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~-~p~a 307 (396)
-|.+..+...+++.++++....+.+.+.++...+ . +..+..++.++...+++|.+...+..+..|+|+++++ ++|+
T Consensus 151 lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~ 230 (415)
T COG0814 151 LKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKA 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHH
Confidence 9999999999999999999988888776665432 2 3567889999999999999999999999999988877 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc-------cCchHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHhhch
Q 016040 308 LVGSMCMITAVYCLMALALTMMVKYTEID-------MNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (396)
Q Consensus 308 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-------~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (396)
+..+..+..++|+...+..+...+.+... +......... ....+.......+...++..++.++.....
T Consensus 231 ~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~ 307 (415)
T COG0814 231 ILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGL 307 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhH
Confidence 99999999999999999999988876321 2233333333 345555666666666666666655544433
No 45
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.73 E-value=6.4e-15 Score=137.46 Aligned_cols=275 Identities=11% Similarity=0.134 Sum_probs=208.0
Q ss_pred hhhccccchhhhccHHhHhhccCh-H-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHHHHHH
Q 016040 88 CFGSVVGSGIFVITGQEAKKHAGP-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIL 165 (396)
Q Consensus 88 ~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~ 165 (396)
.++.-.|.|.+..|.......+.. . +.++|+++++...+.+++ +.|+.||.|++..+.+||..|++.+|..+
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHH
Confidence 345556889999999887774444 3 788999999999888887 88999999999999999999999999877
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 016040 166 LEAVVG-----AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSI 240 (396)
Q Consensus 166 ~~~~~~-----~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~ 240 (396)
+..-.. .+..+...+ +..+++ ... ......+..+++..++.++++++.|...+++++++.
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p~~~-~~~------------~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAPLLH-SPT------------SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHhccC-ccc------------chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 655433 233333333 333333 100 011134567777778888999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCCCCH-HHHHHHHHHHHHHhh-------chhHHhhhhh-hhcCCCCChhHHHHHH
Q 016040 241 VSSCVIVFVIIVGFVHGKTTNLDPFLPYGT-EGVFEAAAVVYWSYT-------GFDMVATMAE-ETKKPSRDIPIGLVGS 311 (396)
Q Consensus 241 ~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~-------G~e~~~~~~~-E~k~p~r~~p~a~~~~ 311 (396)
++++.++++++.++.+.......+..+..- ..+..++....++++ |+-.+..+.+ |.|||||+.|+.+..+
T Consensus 143 ~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G 222 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAG 222 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999987632221111111111 347888888999999 9999999998 9999999999999998
Q ss_pred H-HHHHHHHHHHHHHHHhhccccccc----cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 016040 312 M-CMITAVYCLMALALTMMVKYTEID----MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (396)
Q Consensus 312 ~-~~~~~~y~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 383 (396)
. ....+.|+-..++.....+.+... +...+.++.++..|+.+..++.+...++++++.++...+.++....+
T Consensus 223 ~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~ 299 (378)
T TIGR00796 223 LIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKL 299 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 556666666677777766655432 34566778888888999999999999999999999999999987776
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.70 E-value=1.7e-14 Score=136.19 Aligned_cols=291 Identities=16% Similarity=0.158 Sum_probs=229.7
Q ss_pred chhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHH
Q 016040 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (396)
Q Consensus 80 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 158 (396)
+.+...++..|+.+|.|++..|..... +|.. .....++++.++...++.+.|...+.|...+..+.+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~--~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG--VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 567778899999999999999988743 5554 6777888888888899999999888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 016040 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (396)
Q Consensus 159 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~ 238 (396)
+.+..|++........|....++.+...++..-.. +. + .....+.+.++...+.+.|.|...|+++++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-------~i--~---~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L 149 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-------SM--S---PTAGVLLFTLVAGGVVCVGTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-------CC--C---hHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999888888888888777776665410000 00 0 124555666666668888999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHHHHHH
Q 016040 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAV 318 (396)
Q Consensus 239 ~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~ 318 (396)
...+++.++.+....+.+.+.+|.... +.+....+.++...+++|.-...++.+....++-+|+++|++..+..+..++
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~ 228 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVA 228 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 999999988888888887777766422 1111236778888899999999999999998877788999999999999999
Q ss_pred HHHHHHHHHhhccccccc----cCc---hHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHh
Q 016040 319 YCLMALALTMMVKYTEID----MNA---AYSI-AFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (396)
Q Consensus 319 y~~~~~~~~~~~~~~~~~----~~~---p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 385 (396)
|++...++....|.++.. +.. +... +.+..++++...+..+...++..++.++...+....+..+-+
T Consensus 229 yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~ 303 (403)
T PRK15132 229 YIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQ 303 (403)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999987642 121 3333 344567788888888888888999999888888888877664
No 47
>PRK10483 tryptophan permease; Provisional
Probab=99.70 E-value=1.7e-14 Score=135.54 Aligned_cols=297 Identities=14% Similarity=0.040 Sum_probs=233.2
Q ss_pred ccccccchhHHHHHhhhccccchhhhccHHhHhhccCh-HHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHh
Q 016040 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (396)
Q Consensus 74 ~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 152 (396)
+.|++.+.+...++..|+.+|.|.+..|..... .|- .+....++.++++...++.+.|.+.++|..-+....+++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~--~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG--AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHc
Confidence 346779999999999999999999999987643 454 37777899999999999999999999998888999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
||....+.+..+.+-.......|....++.+...++. . ++. . ....-.+++.+++..+.+.|.|...
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~--~~~-----i-----~~~~~~llF~~~~~~iv~~gt~~vd 150 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-M--SLN-----V-----PARAAGFGFALLVAFVVWLSTKAVS 150 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-c--CCC-----C-----cHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9988877777777666666777788888888887751 0 000 0 1336778888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC--C-CCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHH
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFL--P-YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~ 309 (396)
|+++++...+++..+.++...+.+.+.++..... . ..+...+.++...+++|.-...++.+.+..++-.|+++|+++
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~ 230 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLV 230 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHH
Confidence 9999999999998888887777776665543211 1 224557788899999999999999999888764468999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc----cCc---hHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 016040 310 GSMCMITAVYCLMALALTMMVKYTEID----MNA---AYSIAF-RQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (396)
Q Consensus 310 ~~~~~~~~~y~~~~~~~~~~~~~~~~~----~~~---p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (396)
.+..+..++|++..+++.+..|.++.. ..+ .+.... +..++++...+..+...++..++.++...+....+.
T Consensus 231 iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~ 310 (414)
T PRK10483 231 YGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLA 310 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977642 122 222333 345667777888888888888888888888777777
Q ss_pred HHHh
Q 016040 382 QIAR 385 (396)
Q Consensus 382 ~~a~ 385 (396)
.+-|
T Consensus 311 D~~k 314 (414)
T PRK10483 311 DLFG 314 (414)
T ss_pred HHhC
Confidence 6653
No 48
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.69 E-value=2.8e-14 Score=133.90 Aligned_cols=291 Identities=12% Similarity=0.039 Sum_probs=225.6
Q ss_pred chhHHHHHhhhccccchhhhccHHhHhhccCh-HHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHH
Q 016040 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (396)
Q Consensus 80 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 158 (396)
+.+...++..|+++|.|.+..|-.... .|- .+....++.++++...++.+.|...++|..-+....+++.+||....
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~--~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG--AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 667788999999999999999987643 454 37777899999999999999999999998878999999999998878
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 016040 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (396)
Q Consensus 159 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~ 238 (396)
+.+..+.+-.......|....++.+...++... .+ +. ......+++.++...+.+.|.|...|+++++
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--~~---------~i-~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l 155 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL--GY---------HA-NPRIVGICTAIFVASVLWISSLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--cC---------CC-cHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 777777666666677788888888888775100 00 00 0235668888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccCCCCCCCCC-----HHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHH
Q 016040 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYG-----TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (396)
Q Consensus 239 ~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~ 313 (396)
...+++..+..+.....+.+.++........ +...+.++...+++|.-...++.+....++-.|+.+|+++.+..
T Consensus 156 ~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~ 235 (415)
T PRK09664 156 LGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSL 235 (415)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHH
Confidence 9999998888888877777766654221111 34567788888999998999999988887655779999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccc----cCchH----HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 016040 314 MITAVYCLMALALTMMVKYTEID----MNAAY----SIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (396)
Q Consensus 314 ~~~~~y~~~~~~~~~~~~~~~~~----~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (396)
+..++|++...++....|.++.. ..... ....+...+++...++.+...++..++.++...+....+..+-
T Consensus 236 IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~ 314 (415)
T PRK09664 236 LALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLF 314 (415)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988877642 11112 2233345667888888888888888888888777777777664
No 49
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.69 E-value=4.2e-14 Score=132.85 Aligned_cols=289 Identities=12% Similarity=0.080 Sum_probs=222.4
Q ss_pred HHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcc-cccccchhhhHHHhchhHHHHH
Q 016040 83 DLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEI-PVAGGSFSFLRVELGDFVAYIA 160 (396)
Q Consensus 83 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~-p~~Gg~y~~~~~~~g~~~g~~~ 160 (396)
..+...+|+.+|.|++..|-.... +|.. ..+..+++..++...++.+.|..... |...+.-+.+++.+|+..+.+.
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~--~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~ 100 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGF--GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVI 100 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHH
Confidence 344677888899999999988732 6655 77778888999999999999999998 5555688888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 016040 161 AGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSI 240 (396)
Q Consensus 161 g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~ 240 (396)
+..|++........|.....+.+.+++.++ .+ .......+.+++++++...+.+.|.|...|++.++.+
T Consensus 101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~q----l~-------~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~ 169 (443)
T PRK13629 101 TFLYFFAICPLLWIYGVTITNTFMTFWENQ----LG-------FAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVW 169 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC-------cCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999888888888888877764310 10 0011245788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCC----CC----CH-HHHHHHHHHHHHHhhchhHHhhhhhh----hc-----C-CC
Q 016040 241 VSSCVIVFVIIVGFVHGKTTNLDPFL----PY----GT-EGVFEAAAVVYWSYTGFDMVATMAEE----TK-----K-PS 301 (396)
Q Consensus 241 ~~i~~~i~~~i~~~~~~~~~~~~~~~----~~----~~-~~~~~~~~~~~~~f~G~e~~~~~~~E----~k-----~-p~ 301 (396)
.+++.++.+.+..+.+.+.+|..... +. +. ...+.++...+++|.-...++.++.. .+ | .+
T Consensus 170 ~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~ 249 (443)
T PRK13629 170 PFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTE 249 (443)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHH
Confidence 99999999999999988877764221 11 11 34677888889999887777777655 42 2 24
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc----cCch-HHHHHHHhcc---------hHHHHHHHHHHHHHHHH
Q 016040 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID----MNAA-YSIAFRQIGM---------NWAKYLVSVCALKGMTT 367 (396)
Q Consensus 302 r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~----~~~p-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 367 (396)
|+..|++..+..+..++|++..+++.+..++++.. ++.+ +..+.+...+ ++...+..+...++..+
T Consensus 250 ~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~T 329 (443)
T PRK13629 250 RKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFK 329 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999988863 2334 5666665655 66677777777777777
Q ss_pred HHHHHhhchhHHHHHHH
Q 016040 368 SLLVGSLGQARYTTQIA 384 (396)
Q Consensus 368 ~~~~~~~~~sR~l~~~a 384 (396)
+.++...+..-.+..+.
T Consensus 330 SFlGv~LGl~E~l~gl~ 346 (443)
T PRK13629 330 SFFGHYLGTLEGLNGLI 346 (443)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776666655555555
No 50
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.67 E-value=5e-16 Score=146.33 Aligned_cols=300 Identities=16% Similarity=0.252 Sum_probs=230.1
Q ss_pred ccccchhHHHHH-hhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccc-ccccchhhhHHHh
Q 016040 76 QKCLTWWDLTWL-CFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVEL 152 (396)
Q Consensus 76 ~r~l~~~~~~~~-~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p-~~Gg~y~~~~~~~ 152 (396)
+-+++||+.++. ++-++-|.-+|...+.+..+ +|.. .++.+.++.++.+.++++..-++++-. ++||.|..++|.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 456999998875 45566688888888888776 8876 777788899999999999999999987 7889999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
|+.+|...|..|.+++....+.+..++++.+.+++. .+ +....+-++.+..+++..+|..|.|+..
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~-~~-------------s~~~i~gi~~vt~~ill~i~~ag~~w~~ 171 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFE-TE-------------SKEMIDGIGSVTVLILLAINVAGVEWEA 171 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-hc-------------cHHHhcchhHHHHHHHHHhhhccchhHH
Confidence 999999999999999999999999999999999987 22 1112334888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc--------------ccCCCCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhc
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVHGK--------------TTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 298 (396)
|++.++..+.++.+.-+++..+...+ .+|+.+-..++ ..|+..+...+-+.+|.-+.++++++.|
T Consensus 172 k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~-~tfF~vf~vfFpaatgilaG~nisGdL~ 250 (643)
T KOG2083|consen 172 KLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG-YTFFSVFAVFFPAATGILAGANISGDLK 250 (643)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC-CceEeeeeeecchhhhhhccccccCCCC
Confidence 99999988888888777776665322 01111111111 2466666667788899999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----Cc----hHHHHHHHh-cchHHHHHHHHHHHHHHHHH
Q 016040 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-----NA----AYSIAFRQI-GMNWAKYLVSVCALKGMTTS 368 (396)
Q Consensus 299 ~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-----~~----p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 368 (396)
+|++++|++.+.+......+|+.+...+....-.+.... ++ -+.+-++.. ...........+...+.+.+
T Consensus 251 ~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSs 330 (643)
T KOG2083|consen 251 DPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSS 330 (643)
T ss_pred CchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHH
Confidence 999999999999999999999887776654443332211 11 122222211 01222244566677777888
Q ss_pred HHHHhhchhHHHHHHHhcCCCch
Q 016040 369 LLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 369 ~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
..+.+..+.++++++.+|+..|.
T Consensus 331 alsslVsap~V~QaL~kd~~yp~ 353 (643)
T KOG2083|consen 331 ALSSLVSAPKVLQALCKDSLYPS 353 (643)
T ss_pred HHHHHHhhhHHHHHHHhcCCCcc
Confidence 88899999999999999999994
No 51
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.67 E-value=4.6e-16 Score=148.94 Aligned_cols=314 Identities=16% Similarity=0.165 Sum_probs=219.7
Q ss_pred ccccchhHHHHH-hhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccc-ccccchhhhHHHh
Q 016040 76 QKCLTWWDLTWL-CFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVEL 152 (396)
Q Consensus 76 ~r~l~~~~~~~~-~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p-~~Gg~y~~~~~~~ 152 (396)
+-+++.+-.+.+ ++=.+.|.-.|.....+... +|.. .+....+.++..++++.++.-+++.-- .+||.|..++|.+
T Consensus 111 a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsL 189 (1075)
T KOG2082|consen 111 AARMGTLMGVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSL 189 (1075)
T ss_pred ccccceeeeeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEeccc
Confidence 445555444333 45566677777777666554 6665 677778888888889999999998865 6788999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc---CCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhh
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASM-IDS---NNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (396)
|+.+|..+|.+++++..+..+.+.....+.+... ++. ....+.. ......++...+.+.+++++.+++...|+
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~---~~~~am~nnlRvYGT~~Li~m~lIVf~GV 266 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAH---DEAAAMLNNLRVYGTVFLILMALIVFVGV 266 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccc---cchhhhhcceehHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888876663 331 0000000 11222333345788899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccc-c-----------------------------ccC-----------------
Q 016040 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHG-K-----------------------------TTN----------------- 261 (396)
Q Consensus 229 k~~~~~~~~~~~~~i~~~i~~~i~~~~~~-~-----------------------------~~~----------------- 261 (396)
|..-++..++..+.++.++.+.+.++-.. + ..|
T Consensus 267 K~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~ 346 (1075)
T KOG2082|consen 267 KFVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSA 346 (1075)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCc
Confidence 99999998888888887776665543210 0 001
Q ss_pred ----------CC---C----------------------CCCCC-------------------HHHHHHHHHHHHHHhhch
Q 016040 262 ----------LD---P----------------------FLPYG-------------------TEGVFEAAAVVYWSYTGF 287 (396)
Q Consensus 262 ----------~~---~----------------------~~~~~-------------------~~~~~~~~~~~~~~f~G~ 287 (396)
.. + +.+.| -..|..-+..-+-+.+|+
T Consensus 347 ~c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGI 426 (1075)
T KOG2082|consen 347 TCDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGI 426 (1075)
T ss_pred ccccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhcccccee
Confidence 00 0 00000 011333333445567899
Q ss_pred hHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHHH-----HhcchHHHHHHHHHHH
Q 016040 288 DMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFR-----QIGMNWAKYLVSVCAL 362 (396)
Q Consensus 288 e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~ 362 (396)
-+.++.+++.|||+|++|.+.+.+.+....+|+...+.+..+....-+.+. +.+... .....+-.+++.++.+
T Consensus 427 maGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsF 504 (1075)
T KOG2082|consen 427 MAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSF 504 (1075)
T ss_pred eecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHH
Confidence 999999999999999999999999999999999888877766652222110 000000 0111234467888999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhcCCCc--hhhhc
Q 016040 363 KGMTTSLLVGSLGQARYTTQIARAHMIP--PWFAL 395 (396)
Q Consensus 363 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~ 395 (396)
+|.+++.+.++.+++|+|++.|||+++| +-|+|
T Consensus 505 lST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~ 539 (1075)
T KOG2082|consen 505 LSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGH 539 (1075)
T ss_pred HHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcc
Confidence 9999999999999999999999999999 66655
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.47 E-value=3.7e-11 Score=112.58 Aligned_cols=292 Identities=15% Similarity=0.161 Sum_probs=196.7
Q ss_pred ccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccc-------cccchh
Q 016040 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-------AGGSFS 146 (396)
Q Consensus 74 ~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~-------~Gg~y~ 146 (396)
+.+++++.++.++.++++.+|.|-.......... |||+++....+.+++...+.++=.-|+.+|.+ .||...
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 3466899999999999999999999998888777 99996665666777777777777777766652 367899
Q ss_pred hhHHHhchh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHH
Q 016040 147 FLRVELGDF-VAYIAAGNILLEAVVG-AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (396)
Q Consensus 147 ~~~~~~g~~-~g~~~g~~~~~~~~~~-~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (396)
|.++.+|++ ++.+.+.+.+..+... ...-+.+.++.+...++ . ..+..++++.+++.++.
T Consensus 93 yi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-i-----------------~~~~~gi~l~~l~~~vi 154 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-I-----------------PPWITGIILAILVALVI 154 (416)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-c-----------------cHHHHHHHHHHHHHHHH
Confidence 999988854 5555555544444332 33334444444444333 1 03467778888888888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--------CCCCCC----HHHHH------HHHHHHHHHh--
Q 016040 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--------PFLPYG----TEGVF------EAAAVVYWSY-- 284 (396)
Q Consensus 225 ~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~--------~~~~~~----~~~~~------~~~~~~~~~f-- 284 (396)
..|+|+.+++...+..++.+..++..+..+...-.+-+. .|.+.. ..+.. .++.=.+|+-
T Consensus 155 ~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEA 234 (416)
T PF01235_consen 155 FGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEA 234 (416)
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCC
Confidence 999999999999999998887777666555432211110 233322 21111 1222223444
Q ss_pred -hchhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccccCchHHHHHHHhcchHHHHHHHHH
Q 016040 285 -TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYT---EIDMNAAYSIAFRQIGMNWAKYLVSVC 360 (396)
Q Consensus 285 -~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~ 360 (396)
.|....+|-+.|.++|.|+--.+++-..+-..+.+.+..+.+.....+. +.....-...+++...+++...++.+.
T Consensus 235 G~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~ 314 (416)
T PF01235_consen 235 GLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIA 314 (416)
T ss_pred CCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 4677777888889999876666665555556666777777666554322 222222335566666668889999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHH
Q 016040 361 ALKGMTTSLLVGSLGQARYTTQIA 384 (396)
Q Consensus 361 ~~~~~~~~~~~~~~~~sR~l~~~a 384 (396)
+++..+++.+++.+...|.+..+.
T Consensus 315 l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 315 LFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999988887776
No 53
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.38 E-value=6.1e-11 Score=112.65 Aligned_cols=283 Identities=14% Similarity=0.159 Sum_probs=200.5
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccc-----chhhh
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGG-----SFSFL 148 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg-----~y~~~ 148 (396)
.+|+-++++...-.++.++|.|++..|... ++ .|.. .+...++.+++.+.+++.+.+.-+.++.-.| +-+..
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~-~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYAL-AQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHH-Hh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 477799999999999999999999998544 44 6765 5888899999999999888888888887667 66777
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhh
Q 016040 149 RVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (396)
Q Consensus 149 ~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (396)
++.||+....++++...+.....+..+....++.+..+++. ...+.. ..+......+.+++. +....+...
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~-~~~~~~-----~l~~~~f~iif~~i~---~~~s~lp~~ 182 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPI-VSLNDN-----SLDKQYFIIIFGLIV---LPLSQLPNF 182 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccc-----cccceehhhhHHHHH---HHHHHCCCc
Confidence 89999887788889988888899999999999999998872 211110 011111112222222 222224555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--CCCCCCHHHH-HHHHHHHHHHhhchhHHhhhhhhhcCCCCChh
Q 016040 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--PFLPYGTEGV-FEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305 (396)
Q Consensus 229 k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p 305 (396)
....++.....+..+......+..+..++...+.. +....+.... +.++....|+|.|.-........||+|++ ++
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~ 261 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FK 261 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hh
Confidence 66666776767777666666666666654322111 1111111111 67888999999999999999999999987 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHhhc
Q 016040 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQI-GMNWAKYLVSVCALKGMTTSLLVGSLG 375 (396)
Q Consensus 306 ~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (396)
|+.+.+..+++++|+..++..+...+++..+ ++.... ...|.....++.+.+-.+++...+..-
T Consensus 262 ~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~p 326 (437)
T KOG1303|consen 262 KALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQIYAQP 326 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcc
Confidence 9999999999999999999988888765443 122223 367777777777777776666544333
No 54
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.37 E-value=8.8e-10 Score=104.03 Aligned_cols=290 Identities=14% Similarity=0.156 Sum_probs=179.4
Q ss_pred cccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhccc---cc----ccchhhhH
Q 016040 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP---VA----GGSFSFLR 149 (396)
Q Consensus 77 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p---~~----Gg~y~~~~ 149 (396)
++++.++.++.++++.+|.|-.......... +||+++....+++++...+.+.-.-++.++. +. ||...|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 4699999999999999999844444444555 8898533344445555555555555554444 22 33337777
Q ss_pred HHhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhh
Q 016040 150 VELG-DFVAYIAAGNILLEA-VVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (396)
Q Consensus 150 ~~~g-~~~g~~~g~~~~~~~-~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (396)
+.++ |++|.+.+.. .+.+ .......+...++.+...++ . ..++.++++.++..++...|
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-~-----------------~~~v~~i~l~~l~~~vi~GG 184 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-V-----------------PKLVTGIVLTVLTALIIFGG 184 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-C-----------------cHHHHHHHHHHHHHHHHhcC
Confidence 7655 7888887776 4444 33445555566666553332 1 13467777777777787789
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC---------CCCCCCHHHHHH----------HHHHHHHHh---h
Q 016040 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPYGTEGVFE----------AAAVVYWSY---T 285 (396)
Q Consensus 228 ~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~----------~~~~~~~~f---~ 285 (396)
+|...++...+..++.+..++..+..+. .+.+|.. .+.+....+-.. ++.=..|+- .
T Consensus 185 ik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~ 263 (425)
T TIGR00835 185 LKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGM 263 (425)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhcccccc
Confidence 9999999999999888876655443332 1322221 233322211111 222234544 4
Q ss_pred chhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccccCchHHHHHHHhcchHHHHHHHHHHH
Q 016040 286 GFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYT---EIDMNAAYSIAFRQIGMNWAKYLVSVCAL 362 (396)
Q Consensus 286 G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 362 (396)
|....+|-+.++++|.|+=-.+++--.+-..+.+.+..+.+.....++ +.+...-...+++...++++..++.+.++
T Consensus 264 Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~ 343 (425)
T TIGR00835 264 GSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALF 343 (425)
T ss_pred CcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 666777778888898765544444444445556666666655443332 22222222345665455688899999999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhcC
Q 016040 363 KGMTTSLLVGSLGQARYTTQIARAH 387 (396)
Q Consensus 363 ~~~~~~~~~~~~~~sR~l~~~a~dg 387 (396)
+..+++++++.+..-+.+..+.+++
T Consensus 344 lFaftTii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 344 LFAFSTIIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999988888875555
No 55
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.36 E-value=1.2e-09 Score=101.38 Aligned_cols=295 Identities=16% Similarity=0.159 Sum_probs=204.7
Q ss_pred ccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccc-------cccchh
Q 016040 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-------AGGSFS 146 (396)
Q Consensus 74 ~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~-------~Gg~y~ 146 (396)
+.+++++.++.++.++++.+|+|-.......... |||+++....+.+++...+.+.=.-|+..|.+ .||.-.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 3467899999999999999999999998888877 99985555556677777778777778877762 368889
Q ss_pred hhHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHH
Q 016040 147 FLRVELG-DFVAYIAAGNILLEAV-VGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (396)
Q Consensus 147 ~~~~~~g-~~~g~~~g~~~~~~~~-~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (396)
|.++.+| |++|.+.+....+++- .....-+.++++.+...++ .+ ..+.++++.++..++.
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-~~-----------------~~~~gi~la~l~~~VI 198 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-IP-----------------PLVTGIVLALLVALVI 198 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-Cc-----------------HHHHHHHHHHHHHHHH
Confidence 9999988 5677777766666665 4667777777877777766 21 3478888888889999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCC--------CCCCCCC----HH------HHHHHHHHHHHHh--
Q 016040 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL--------DPFLPYG----TE------GVFEAAAVVYWSY-- 284 (396)
Q Consensus 225 ~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~--------~~~~~~~----~~------~~~~~~~~~~~~f-- 284 (396)
..|+|..+++......++.+.-++..+..+...-..-+ ..|.+.. +. .+..+..=.+|+-
T Consensus 199 ~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEA 278 (452)
T COG1115 199 FGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEA 278 (452)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999988877766655544432111100 0222221 11 1223333345555
Q ss_pred -hchhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcccccc---ccCchHHHHHHHhcchHHHHHHHHH
Q 016040 285 -TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI---DMNAAYSIAFRQIGMNWAKYLVSVC 360 (396)
Q Consensus 285 -~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~ 360 (396)
.|..-.++-+.+++||-|+=-..++...+-..+.+....+.++....++.. +...-...+++...+.++..++.+.
T Consensus 279 GmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~ 358 (452)
T COG1115 279 GMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIA 358 (452)
T ss_pred cCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHH
Confidence 345555666677788866544444444443556666666666555443322 2223334567777778999999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhcC
Q 016040 361 ALKGMTTSLLVGSLGQARYTTQIARAH 387 (396)
Q Consensus 361 ~~~~~~~~~~~~~~~~sR~l~~~a~dg 387 (396)
+.+..+++++++++..-|.+.-+..++
T Consensus 359 l~lFafTTIlg~yyyge~~~~fl~~~k 385 (452)
T COG1115 359 LFLFAFTTILGWYYYGEKNIEFLFGSK 385 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999998888777665
No 56
>PLN03074 auxin influx permease; Provisional
Probab=99.27 E-value=1.2e-09 Score=106.12 Aligned_cols=239 Identities=11% Similarity=0.093 Sum_probs=141.7
Q ss_pred ccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHh----hhhhcccccccc------
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYT----EFAVEIPVAGGS------ 144 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~----el~~~~p~~Gg~------ 144 (396)
.++-+..+...-.+...+|.|++..|... +. +|.. .++..++.++++..+++.+. |..++.|+.+-.
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af-~~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~ 120 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSF-SQ-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHH-HH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence 34556666666688888999999988765 34 6654 66677777777777777655 456666653321
Q ss_pred --hhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHH
Q 016040 145 --FSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNG 222 (396)
Q Consensus 145 --y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (396)
.+...+.+||.++.+......+..+..+..+....+..+..+.. .+.... ...++..+.+.+.
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~------------~~~~~~-~~~i~~~v~~~~~-- 185 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND------------NLDKRT-WTYIFGACCATTV-- 185 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC------------CcCCCe-EEeehHHHHHHHH--
Confidence 22334567888877776555555544444444433332222211 000010 1112222222222
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCC
Q 016040 223 IAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSR 302 (396)
Q Consensus 223 i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r 302 (396)
..+..|..+++..+.....+...+.+.+..+...+......-.+.++..++.++..++|+|.|.-....+..|||||+
T Consensus 186 -~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~- 263 (473)
T PLN03074 186 -FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ- 263 (473)
T ss_pred -HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-
Confidence 244566666666555444444333334333333332222111223456677777789999999999999999999996
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016040 303 DIPIGLVGSMCMITAVYCLMALALTMMVKYT 333 (396)
Q Consensus 303 ~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 333 (396)
++++....+...+..+|+...+..+...+++
T Consensus 264 ~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 264 KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 5999888888888888888777666666654
No 57
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.22 E-value=2.1e-09 Score=100.77 Aligned_cols=241 Identities=12% Similarity=0.108 Sum_probs=156.3
Q ss_pred ccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHH----HHHHhhhhhccccc---------
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLS----AFCYTEFAVEIPVA--------- 141 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~----~~~~~el~~~~p~~--------- 141 (396)
++..+..+.+.-.+..++|+|++..|..- +. +|.. ..+.-++.+.+++.+ ..|-.+++++....
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AF-k~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAF-KN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHH-Hh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 34578888888888889999999887754 44 6654 444444334433332 33444555553111
Q ss_pred ---ccchhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHH
Q 016040 142 ---GGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILL 218 (396)
Q Consensus 142 ---Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (396)
.+.+.| -|.+|+...+++-....+++...+..+....++.+..+++......+. ..+..++.+.
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s------------~~~~i~~~~~ 188 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLS------------VRLYILIQLP 188 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCcc------------HHHHHHHHHH
Confidence 122335 689999999999999999999999999999999999888711112121 1122222222
Q ss_pred HHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC-CCHHHHHHHHHHHHHHhhchhHHhhhhhh
Q 016040 219 VCNGIA-MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLP-YGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (396)
Q Consensus 219 ~~~~i~-~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~G~e~~~~~~~E 296 (396)
....+| ++..|+..-+..+.-++.++.++++....+.... ...+... .++.++...+..++|+|-|...+..+-++
T Consensus 189 ~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~ 266 (449)
T KOG1304|consen 189 PLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP--PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENS 266 (449)
T ss_pred HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC--CccccccccchhhhHHHHHHHHHHhccceEEEehhhc
Confidence 233333 2444444444444444444444444433333222 2211111 24778888999999999999999999999
Q ss_pred hcCCCCChh---HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 016040 297 TKKPSRDIP---IGLVGSMCMITAVYCLMALALTMMVKYTE 334 (396)
Q Consensus 297 ~k~p~r~~p---~a~~~~~~~~~~~y~~~~~~~~~~~~~~~ 334 (396)
||+|+ ++| +.+-.++.++.++|+...+.-+...++|-
T Consensus 267 Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v 306 (449)
T KOG1304|consen 267 MKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDV 306 (449)
T ss_pred ccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99996 488 99999999999999999888887777654
No 58
>PTZ00206 amino acid transporter; Provisional
Probab=99.20 E-value=9.1e-09 Score=100.35 Aligned_cols=245 Identities=13% Similarity=0.113 Sum_probs=157.5
Q ss_pred chhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHH
Q 016040 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (396)
Q Consensus 80 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 158 (396)
+..+..+-.+.+++|+|++..|... .. +|.. .++..++.++++......+.+.+.+. +..++.+..+..+||+..+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af-~~-~G~v~giillil~a~ls~ys~~lL~~~~~~~-~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAA-NS-SGLVMAMIYLIIITAMTIFSIYALGVAADKT-NIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHH-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHhCHHHHH
Confidence 4456666677788999999988765 33 6654 66666666777777777777766553 3335666667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 016040 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (396)
Q Consensus 159 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~ 238 (396)
++.+..++.....+.++....++.+...+......++. ....... .....+.+++.+-+...+.++..+++..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~---~~~~~~r--~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL---KQKSGNR--LLTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh---hhccCcE--EeeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 99999999999999999999999888877521111110 0000001 011111122233334456666666666554
Q ss_pred HHHHHHHHHHHHHHhhccccccCCC-----C-------CCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCC-CChh
Q 016040 239 SIVSSCVIVFVIIVGFVHGKTTNLD-----P-------FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS-RDIP 305 (396)
Q Consensus 239 ~~~~i~~~i~~~i~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~-r~~p 305 (396)
....+..++.+++..+....+++.. . .++ .....+.++....|+|.+.........|+|||. |++.
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~ 291 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFN-SGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFV 291 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEec-CchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHH
Confidence 4333333333322222222221111 0 111 113467788999999999999999999999864 6788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016040 306 IGLVGSMCMITAVYCLMALALTMMVKYT 333 (396)
Q Consensus 306 ~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 333 (396)
+.+..++.++.++|.+..+..+...+++
T Consensus 292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 292 LASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 9999999999999999999888777654
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.01 E-value=4e-07 Score=81.31 Aligned_cols=270 Identities=14% Similarity=0.052 Sum_probs=174.7
Q ss_pred HHHhhhccccchhhhccHHhHhhccC---hHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHH
Q 016040 85 TWLCFGSVVGSGIFVITGQEAKKHAG---PAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAA 161 (396)
Q Consensus 85 ~~~~~~~~ig~gi~~~~~~~~~~~~G---~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g 161 (396)
....++.++|.|.- .-..+.+. -+ ..+.++.++.+++....+....++++++. +...-++.++.+||.++.+.-
T Consensus 9 ~f~~ig~~vGAGfA-sGqEi~QF-F~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 9 AFAFIGTVVGAGFA-SGQEIMQF-FGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHhhccccc-chHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHH
Confidence 34556677887754 33444444 33 34899999999999999999999999995 445888999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Q 016040 162 GNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG-TRRSSWLNWISSI 240 (396)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~k~~~~~~~~~~~ 240 (396)
....+.-+..+.....+.+..+...++ .+ .++-+++++.+..+...++ .+..-+++.+.+.
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~~~-lP-----------------~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P 147 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEMFG-LP-----------------YWIGALIIILLVLILLFLGRVEGIITVNGIITP 147 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHhC-cc-----------------HHHHHHHHHHHHHHHHHHhcccceeeeheeHHH
Confidence 776666655555555555657777666 11 1233355555555555566 7777777777666
Q ss_pred HHHHHHHHHHHHhhccccccCC---CCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHHHHH
Q 016040 241 VSSCVIVFVIIVGFVHGKTTNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITA 317 (396)
Q Consensus 241 ~~i~~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~ 317 (396)
+.++.+..+...... .+.+|. ..-...+|..-..+ ...+=...+......+++|+|++ |+..++-+.+-++.++
T Consensus 148 ~LIi~l~~v~~~~~f-~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgv 224 (349)
T COG3949 148 FLIIILVLVTLSFQF-TNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGV 224 (349)
T ss_pred HHHHHHHHHHHHHHH-hhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHH
Confidence 665553333322222 111111 11112244322222 12222224566677788999996 6788888888888888
Q ss_pred HHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 016040 318 VYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380 (396)
Q Consensus 318 ~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 380 (396)
+..+..+.+....| +-.+.+-|...+.++.. +....++.+.+.+..+.+..+.+++.+|-+
T Consensus 225 l~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~l~~r~ 285 (349)
T COG3949 225 LLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYGLASRL 285 (349)
T ss_pred HHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888877776555 23344569999888776 666677777777778877777776654443
No 60
>PRK11375 allantoin permease; Provisional
Probab=98.82 E-value=7.9e-06 Score=80.04 Aligned_cols=299 Identities=11% Similarity=-0.018 Sum_probs=150.7
Q ss_pred ccccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHh
Q 016040 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (396)
Q Consensus 74 ~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 152 (396)
+.+|+-++++.+.+=++.....+.+...+..+...-+.. ++++.+++.++........+.++.++.. +.....+..|
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~sR~sF 99 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMILRASY 99 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhHHHHH
Confidence 347788999998888877765555433333332212222 6666666655555555555444444322 4667778899
Q ss_pred chhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCc--ccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 016040 153 GDFVAYIAAGNIL-LEAVVGAAGLARSWSSYLASMIDSNNS--DLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (396)
Q Consensus 153 g~~~g~~~g~~~~-~~~~~~~a~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 229 (396)
|..-+.+.+.... +..+...+......++.+..++..... .++...++.. .-+....+..+++.++.+.+.+.|.|
T Consensus 100 G~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~-g~~~~~~i~~~i~~~l~~~~~~~g~~ 178 (484)
T PRK11375 100 GVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLL-GLSLPGLITFLIFWLVNVGIGFGGGK 178 (484)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccC-CCcHHHHHHHHHHHHHHHHHHHcCHH
Confidence 9887777777763 456666666666666666554431100 0000000100 00001123344555566666778999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCC-------CHHHHHHHHHHHHHHhh-chhHHhhhhhhhcCCC
Q 016040 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPY-------GTEGVFEAAAVVYWSYT-GFDMVATMAEETKKPS 301 (396)
Q Consensus 230 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~f~-G~e~~~~~~~E~k~p~ 301 (396)
...+++.+...+.++..+.+.+..+...+........+. ....+..++...+-++. +.-..+.+++..|++|
T Consensus 179 ~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~ 258 (484)
T PRK11375 179 VLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFR 258 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChh
Confidence 999999888887766665555544444332211111111 12334444433333443 3445667777788864
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH-hhccccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHhhchh
Q 016040 302 RDIPIGLVGSMCMITAVYCLMALALT-MMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLL-VGSLGQA 377 (396)
Q Consensus 302 r~~p~a~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s 377 (396)
+.-++...+..+...+.....+... .....-.....+|.. +..+.+..++..+..+.++++..++.. ..++..+
T Consensus 259 -~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~-i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys~~ 334 (484)
T PRK11375 259 -AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLD-IVQRWDSLFASFFAVLVILMTTISTNATGNIIPAG 334 (484)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccHH
Confidence 4455665555554444322222211 111000001233433 333333344444455555566555543 3444443
No 61
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.63 E-value=0.00019 Score=70.81 Aligned_cols=282 Identities=12% Similarity=0.065 Sum_probs=154.9
Q ss_pred ccccchhHHHHHhhhccccchhhhc-cHHhHhhccChH-HHHHH---HHHHHHHHHHHHHHhhhhhcccccccchhhhHH
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPA-IVLSY---LASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~-~~~~~---il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~ 150 (396)
.|+++++-...-.+++.++.+.+.. ++.... .|.. .+++. ....+.....+.-+.++.++. +.-...++.++
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~ 116 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK--YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRA 116 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHH
Confidence 6889988887777777666544444 444433 3432 22211 111111122333344555554 33468999999
Q ss_pred Hhchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhh
Q 016040 151 ELGDF-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (396)
Q Consensus 151 ~~g~~-~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 229 (396)
.||+. ...+.+....+..+...+......+..++..++ .+. ...+.+..++.+.+....|.|
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~~----------------~~~iii~~~iv~iYt~~GGl~ 179 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-ISY----------------ETGLLIFGITVALYTAFGGFR 179 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCH----------------HHHHHHHHHHHHHHHHhccHH
Confidence 99865 566666666666666777777777888887765 211 112223334456677778888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc-------------cccCCCCCCCCC---HHHHHHHHHHHHHHhhchhHHhhh
Q 016040 230 RSSWLNWISSIVSSCVIVFVIIVGFVHG-------------KTTNLDPFLPYG---TEGVFEAAAVVYWSYTGFDMVATM 293 (396)
Q Consensus 230 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~-------------~~~~~~~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~ 293 (396)
...+...+-.++.++..+++.+..+... +++.+.+..+.+ +..+........+...+.....+-
T Consensus 180 av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR 259 (483)
T PRK09442 180 AVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVR 259 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888777776666665544443322210 111111221212 111111111122222333333333
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH---hhccccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 016040 294 AEETKKPSRDIPIGLVGSMCMITAVYCLMALALT---MMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLL 370 (396)
Q Consensus 294 ~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (396)
.-..||+ |+..|+..++.....++++...+.-. ...|+ ..+.+..+..+..+..++++..++...++.+.+++..
T Consensus 260 ~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~ 337 (483)
T PRK09442 260 CMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVD 337 (483)
T ss_pred HHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 3446776 67889988887766666654444321 12332 2234455666666777788888888888888888877
Q ss_pred HHhhchhHH
Q 016040 371 VGSLGQARY 379 (396)
Q Consensus 371 ~~~~~~sR~ 379 (396)
+.+.+.+-+
T Consensus 338 s~l~~~ss~ 346 (483)
T PRK09442 338 SQLLQSSST 346 (483)
T ss_pred HHHHHHHHH
Confidence 777665554
No 62
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.62 E-value=1.6e-09 Score=104.57 Aligned_cols=244 Identities=15% Similarity=0.172 Sum_probs=159.4
Q ss_pred cccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccc---ccccchhhhHHHh
Q 016040 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP---VAGGSFSFLRVEL 152 (396)
Q Consensus 77 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p---~~Gg~y~~~~~~~ 152 (396)
|+-|+++.....++.++|.|++..|..... .|.. .++..++.++++......+.+.....+ +.....+-.++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~--~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ--SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 467899999999999999999999887643 5654 777788888888888999999988765 4444555567899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHH-HhhhhhhH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI-AMSGTRRS 231 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~g~k~~ 231 (396)
|++.+++......+........+....++.+....+... .+. ..... .+.++..++...+ ..+..+..
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~-~~~-------~~~~~---~~~~i~~~i~~pls~~~~l~~l 147 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFF-GDL-------FISRY---VWIIIFALIVLPLSFLKNLKSL 147 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccc-ccc-------ccccc---ccccccccccccccccchhhHH
Confidence 999999998888888888887887778887777765211 100 00110 1111111111112 22233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--ccccCCC---CCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCC--Ch
Q 016040 232 SWLNWISSIVSSCVIVFVIIVGFVH--GKTTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSR--DI 304 (396)
Q Consensus 232 ~~~~~~~~~~~i~~~i~~~i~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r--~~ 304 (396)
+++.....+..+..+++........ .+..+.. .+....+.++..++....|+|.+......+.+|+|+|+| ++
T Consensus 148 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~ 227 (409)
T PF01490_consen 148 RYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKM 227 (409)
T ss_pred HHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccccc
Confidence 3333332222222111111111111 1111111 112345678899999999999999999999999999865 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 016040 305 PIGLVGSMCMITAVYCLMALALTMMVKYT 333 (396)
Q Consensus 305 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 333 (396)
.|....+..++.++|++..+..+...+++
T Consensus 228 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~ 256 (409)
T PF01490_consen 228 KKVLSISMIICFIIYLLFGIFGYLAFGDS 256 (409)
T ss_pred ceeeeehhhhhhHHhhhhhhcccceeeee
Confidence 49999999999999999998877766643
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.61 E-value=0.00013 Score=70.31 Aligned_cols=284 Identities=12% Similarity=0.036 Sum_probs=160.2
Q ss_pred ccccchhHHHHHhhhccccchhhhc-cHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhch
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~ 154 (396)
.|+++++......+++..+.+.+.. ++.... .|...++..+...+.....++.+.+..++.+ .-...+|.++.||+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~ 78 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA--YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGK 78 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCc
Confidence 4788898888877777776555444 444433 4433332233333444455666666655544 44699999999998
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 016040 155 -FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (396)
Q Consensus 155 -~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 233 (396)
....+.++...+..+...+......+..++...+ .+. ...+.+...+...+....|.|...+
T Consensus 79 ~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i~~----------------~~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 79 RILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-LDL----------------YLSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chH----------------HHHHHHHHHHHHHHHHHcchHHHHH
Confidence 4666667777777888888888888888887766 211 1123333444556677789998888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-------------c------cCCCC-CCCC----CHHHHHHHHHHHHHHhhchhH
Q 016040 234 LNWISSIVSSCVIVFVIIVGFVHGK-------------T------TNLDP-FLPY----GTEGVFEAAAVVYWSYTGFDM 289 (396)
Q Consensus 234 ~~~~~~~~~i~~~i~~~i~~~~~~~-------------~------~~~~~-~~~~----~~~~~~~~~~~~~~~f~G~e~ 289 (396)
...+=.++.++..+++.+..+.+.+ + +++.. ..+. .|.-...+.......+..-..
T Consensus 142 Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 221 (407)
T TIGR00813 142 TDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQV 221 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHH
Confidence 7777666665554444433322111 1 00000 0000 110001111111011101111
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH---hhcc----ccc----cccCchHHHHHHHhcchHHHHHHH
Q 016040 290 VATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALT---MMVK----YTE----IDMNAAYSIAFRQIGMNWAKYLVS 358 (396)
Q Consensus 290 ~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~---~~~~----~~~----~~~~~p~~~~~~~~~~~~~~~~~~ 358 (396)
..+-.=-.||+ |+.+|+...+.....+++++..+.-. ...+ ..+ .+++..+..+..+..++++..++.
T Consensus 222 ~~qR~~a~ks~-~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~ 300 (407)
T TIGR00813 222 IVQRCLAAKSA-KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFL 300 (407)
T ss_pred HhhHHHhcCCH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHH
Confidence 12222334664 67899998887766666554433321 1222 111 134556666777777888888888
Q ss_pred HHHHHHHHHHHHHHhhchhHHH
Q 016040 359 VCALKGMTTSLLVGSLGQARYT 380 (396)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR~l 380 (396)
+.++.+.+++..+.+.+.+-.+
T Consensus 301 agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 301 AAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHHhhhhhHHHHHHHH
Confidence 8888888888888777776665
No 64
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.57 E-value=0.00028 Score=69.38 Aligned_cols=285 Identities=11% Similarity=0.031 Sum_probs=155.7
Q ss_pred ccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHH---HHHHHHHHHHHHHHhhhhhcccccccchhhhHHH
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSY---LASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~---il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 151 (396)
.|+++++....-.+++.++.+.+......... .|.. ..+.+ ..+.+.....+.-+.++.++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58899999888888888776555543333222 3432 11111 111111112233344444444 344689999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 152 LGDF-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 152 ~g~~-~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
+|+. ...+.+....+..+..........+..++..++ .+ + ...+.+...+.+.+....|.|.
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-i~--------------~--~~~iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-LS--------------Y--LTALFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC--------------H--HHHHHHHHHHHHHHHHhhhHHH
Confidence 9954 566666666666666666666666777776665 21 1 1122233344567777789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc-cc------------cCCCCCCCCCHH--HHHHHH-HHHHHHhhchhHHhhhh
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFVHG-KT------------TNLDPFLPYGTE--GVFEAA-AVVYWSYTGFDMVATMA 294 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~~~-~~------------~~~~~~~~~~~~--~~~~~~-~~~~~~f~G~e~~~~~~ 294 (396)
..+.+.+-.++.++..+++.+..+... +. +...++.+.++. .+...+ ....+...+.....+-.
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~ 259 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRC 259 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHH
Confidence 888887777666665555444333321 11 111122222211 111111 11112222333333344
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh--ccccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 016040 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMM--VKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVG 372 (396)
Q Consensus 295 ~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (396)
-..||+ |+.+|+...+..+...+++...+..... ..++..+++..+..+..+..++++..++...++.+.+++..+.
T Consensus 260 ~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~ 338 (471)
T TIGR02119 260 MSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSL 338 (471)
T ss_pred HhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Confidence 556775 6789999888776666655444432111 1122222355555665666778888888888888888888887
Q ss_pred hhchhHHH
Q 016040 373 SLGQARYT 380 (396)
Q Consensus 373 ~~~~sR~l 380 (396)
+.+.+-.+
T Consensus 339 l~~~ss~~ 346 (471)
T TIGR02119 339 LLQSSSTI 346 (471)
T ss_pred HHHHHHHH
Confidence 77666553
No 65
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.44 E-value=0.00088 Score=66.10 Aligned_cols=284 Identities=11% Similarity=0.071 Sum_probs=145.1
Q ss_pred ccccchhHHHHHhhhccccchhhh-ccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhccc----ccccchhhhHH
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP----VAGGSFSFLRV 150 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p----~~Gg~y~~~~~ 150 (396)
.|+++++-...-..++.++...+. .++.... .|....+..+...+..+...+.+++--+++. ..-..++|.++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~--~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV--TGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 588998887665555555543333 4555433 4433222122111222223334443333222 23358999999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhh
Q 016040 151 ELGD---FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (396)
Q Consensus 151 ~~g~---~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (396)
.||+ ....+.+....+......+......+..++..++ .+ + ...+.+...+.+.+....|
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~--------------~--~~~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LD--------------Y--KTGLLIGALIIVIYTFFGG 175 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc--------------H--HHHHHHHHHHHHHHHHhhh
Confidence 9994 4555566555555556666666677777776655 21 1 1123334455667777789
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhccc-------------cccCCCCCCCCCHHHHHHHHHHHHHHhhchhHHhhhh
Q 016040 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHG-------------KTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA 294 (396)
Q Consensus 228 ~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~ 294 (396)
.|...+...+=.++.++..+++.+..+... +++....+.+.++..+...+... ..+.|.....+-.
T Consensus 176 l~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~p~~~qR~ 254 (487)
T TIGR02121 176 FLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWG-LGYFGQPHIIVRF 254 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHH-HHhccchHHHHHH
Confidence 998888777666666554443333322211 11111112222332222221111 1112222222222
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHH---HHhhcccc-c---cccCchHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 016040 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALA---LTMMVKYT-E---IDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTT 367 (396)
Q Consensus 295 ~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~---~~~~~~~~-~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (396)
--.||+ |+..|+...+.....+..+...+. .....+.. + .+.+..+....++..++++..++...++.+.++
T Consensus 255 ~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mS 333 (487)
T TIGR02121 255 MAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMS 333 (487)
T ss_pred HhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 234664 678888877654433322211111 11111211 1 123445555666667788888888888888888
Q ss_pred HHHHHhhchhHHH
Q 016040 368 SLLVGSLGQARYT 380 (396)
Q Consensus 368 ~~~~~~~~~sR~l 380 (396)
+..+.+.+.+-.+
T Consensus 334 T~~s~l~s~ss~~ 346 (487)
T TIGR02121 334 TISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776554
No 66
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.42 E-value=0.00027 Score=67.21 Aligned_cols=277 Identities=13% Similarity=0.119 Sum_probs=158.5
Q ss_pred HhhhccccchhhhccHHhHhhccChH---HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHHHH
Q 016040 87 LCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGN 163 (396)
Q Consensus 87 ~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~ 163 (396)
+.++.-.|.|-+.-|...-.. +|.. +.++++++++..=..+.. ... ..||.+.-..+..||..|.+....
T Consensus 11 ~LFamFFGAGNLIFPp~lG~~-aG~~~~~a~~GF~lTgV~lP~Lgvi-----a~~-~~~~~~~~l~~~v~~~f~~if~~~ 83 (427)
T PF05525_consen 11 ALFAMFFGAGNLIFPPFLGQQ-AGSNWWPAMIGFLLTGVGLPLLGVI-----AVA-KSGGGIEDLASRVGPKFALIFTIL 83 (427)
T ss_pred HHHHHHhCCccccchHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHH-----HHh-hcCCCHHHHhcccCcHHHHHHHHH
Confidence 344444577888888877655 6643 555566665544433322 112 234455556667788888777654
Q ss_pred HHHHH--HHHHHHHHHHHHH-HHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 016040 164 ILLEA--VVGAAGLARSWSS-YLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSI 240 (396)
Q Consensus 164 ~~~~~--~~~~a~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~ 240 (396)
..+.. ....+-.+...-+ -+..+++ . ++.....+..+++..+..++.+..-|...++-++++.
T Consensus 84 i~l~IGP~~aiPRtaa~sfe~~i~p~~~-~-------------~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP 149 (427)
T PF05525_consen 84 IYLSIGPLFAIPRTAAVSFEMGIAPFFP-E-------------NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTP 149 (427)
T ss_pred HHHHHHhcccCcchhhhhHHHhhhccCC-c-------------ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 43322 2222222222112 2222222 0 1222345777888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCCCC---CCCCCH-HHHHHHH----HHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHH
Q 016040 241 VSSCVIVFVIIVGFVHGKTTNLDP---FLPYGT-EGVFEAA----AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312 (396)
Q Consensus 241 ~~i~~~i~~~i~~~~~~~~~~~~~---~~~~~~-~~~~~~~----~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~ 312 (396)
+.++.++++++.++.+...+...+ ..+..+ .+++.|. ..+...|...-.-+--....+|+ |+..|.+..+-
T Consensus 150 ~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag 228 (427)
T PF05525_consen 150 ILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAG 228 (427)
T ss_pred HHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Confidence 999999999998887633221111 111111 2232222 12223333333333333334443 34555555544
Q ss_pred HHHHHH----HHHHHHHHHhhcc--ccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHh
Q 016040 313 CMITAV----YCLMALALTMMVK--YTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (396)
Q Consensus 313 ~~~~~~----y~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 385 (396)
++.+++ |......-....+ .++.+....+..+.++..|+.+..++.+...++|+++..+...+++.....+.+
T Consensus 229 ~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 229 LIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP 307 (427)
T ss_pred HHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444443 4333332222222 112233346667777888899999999999999999999999999999888766
No 67
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.42 E-value=2.5e-05 Score=75.26 Aligned_cols=284 Identities=15% Similarity=0.113 Sum_probs=140.4
Q ss_pred ccccchhHHHHHhhhccccchhhhc-cHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhch
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~ 154 (396)
.|+++++....-.+++.++.+.+.. ++.... .|....+..+...+......+.++.--++. +.-...+|.++.+|+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~--~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~ 81 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS--YGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGS 81 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH--T-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-H
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCC
Confidence 5789998887777777776555444 454443 454433323333333444444444444433 344689999999999
Q ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 155 FV--AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 155 ~~--g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
.. ..+.+....+..+...+....+.+..++...+ .+. .....+...++..+....|.|...
T Consensus 82 ~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~~----------------~~~~~i~~~i~~iYt~~GGl~av~ 144 (406)
T PF00474_consen 82 KALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IPY----------------NTAILIVGVIVIIYTFFGGLRAVA 144 (406)
T ss_dssp HH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---H----------------HHHHHHHHHHHHHTTCTT------
T ss_pred chhhhhhcccccchhhhhhhhccccccccchhhccc-hhh----------------hHHHHHHHHHHHHhhhhhhHhhhh
Confidence 88 66666666666777777888888888887766 211 112333444455566677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-------------ccccCCCCCCCCCH---HHHHHHHHHHHHHhhchhHHhhhhh-
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVH-------------GKTTNLDPFLPYGT---EGVFEAAAVVYWSYTGFDMVATMAE- 295 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~G~e~~~~~~~- 295 (396)
+...+-.++.++..+++.+..+.. .+++....+.|.+. ...............|.....++..
T Consensus 145 ~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR 224 (406)
T PF00474_consen 145 WTDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQR 224 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHH
Confidence 777666665555544444433321 11111111112221 0111110000011122222233332
Q ss_pred --hhcCCCCChhHHHHHHHHHHHHHHHHHHH------HHHhhcc----ccccccCchHHHHHHHhcchHHHHHHHHHHHH
Q 016040 296 --ETKKPSRDIPIGLVGSMCMITAVYCLMAL------ALTMMVK----YTEIDMNAAYSIAFRQIGMNWAKYLVSVCALK 363 (396)
Q Consensus 296 --E~k~p~r~~p~a~~~~~~~~~~~y~~~~~------~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 363 (396)
-.|++ |+.+|+...+.....+++..... ......| ++..+++..+.....+..++++..++.+.++.
T Consensus 225 ~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~a 303 (406)
T PF00474_consen 225 FLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILA 303 (406)
T ss_dssp HHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHH
T ss_pred HHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHH
Confidence 33554 67888888776554444443211 1222222 11223345666777778888888888888888
Q ss_pred HHHHHHHHHhhchhHHH
Q 016040 364 GMTTSLLVGSLGQARYT 380 (396)
Q Consensus 364 ~~~~~~~~~~~~~sR~l 380 (396)
+.+++..+.+.+.+-.+
T Consensus 304 A~~ST~~s~l~a~ss~~ 320 (406)
T PF00474_consen 304 AIMSTADSLLLAISSIF 320 (406)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhhh
Confidence 88888888777766654
No 68
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.39 E-value=0.00018 Score=68.36 Aligned_cols=169 Identities=11% Similarity=0.011 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 016040 113 IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNS 192 (396)
Q Consensus 113 ~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~ 192 (396)
++++.+++-++.....-..++++.+...+ .....+..||.+-+.+.....++.++...+......++......+
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~---- 127 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTG---- 127 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCC----
Confidence 56666666666666666666665554333 344456789999999999888888888888887777765222111
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccCCCCCCCCCHH
Q 016040 193 DLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTE 271 (396)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~-~~~~~~~~~~~~~ 271 (396)
.+ ..+..+++.++.++..+.|.|...+++++.....++..+..+...+-..+ .+....-.+..+.
T Consensus 128 ---------~~-----~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (442)
T COG1457 128 ---------LP-----VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPL 193 (442)
T ss_pred ---------Cc-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcch
Confidence 11 22455556667778888999999999999998888777766666555222 2222222345566
Q ss_pred HHHHHHHHHHHHhhc-hhHHhhhhhhhcCCC
Q 016040 272 GVFEAAAVVYWSYTG-FDMVATMAEETKKPS 301 (396)
Q Consensus 272 ~~~~~~~~~~~~f~G-~e~~~~~~~E~k~p~ 301 (396)
.++.++..++-.+.. --.++.++.-.|+|+
T Consensus 194 ~fl~a~slv~g~~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 194 SFLSALSLVIGSFASWGPYAADYSRYAPSPT 224 (442)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence 677776666555544 466777788788765
No 69
>PRK11017 codB cytosine permease; Provisional
Probab=98.35 E-value=0.0011 Score=63.56 Aligned_cols=218 Identities=12% Similarity=0.036 Sum_probs=118.1
Q ss_pred ccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccc-cchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~G-g~y~~~~~~~g 153 (396)
+|+ +.++.+..-++..+....+..-+.. ..+-+.. ++++.+++.++........+..+ |+.| ......+..||
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G---~k~G~~~~v~sR~~FG 82 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTL-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIG---AKTGLSTHLLARFSFG 82 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcCHHHHHHHHhc
Confidence 445 7788766655544332222222222 2212233 66666666655554444444443 4444 35666778999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 016040 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (396)
Q Consensus 154 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 233 (396)
.+.+.+.+....+..+...+......+..+....+ .+. ....+++.++.......|.|...+
T Consensus 83 ~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~~-----------------~~~~~i~~~l~~~~~~~G~~~i~~ 144 (404)
T PRK11017 83 EKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LDI-----------------NLLIVLSGLLMTVTAYFGISALTI 144 (404)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CCH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888887777777777666665555443 110 122334445556666788888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-ccCCCCCCCCCHHHHHHHHHHHHHH-hhchhHHhhhhhhhcCCCCChhHHHHHH
Q 016040 234 LNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTEGVFEAAAVVYWS-YTGFDMVATMAEETKKPSRDIPIGLVGS 311 (396)
Q Consensus 234 ~~~~~~~~~i~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-f~G~e~~~~~~~E~k~p~r~~p~a~~~~ 311 (396)
++++.....++..+...+..+.+.+ ........+.+...++.++...+-. ..+.-..+.++...|+||+ .-.+...+
T Consensus 145 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~~~~~~lg 223 (404)
T PRK11017 145 LSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-AVLATMVA 223 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc-eeehhHHH
Confidence 9888877766655544443333221 1111111122223344444333322 3445667778888888654 33455555
Q ss_pred HHHHHH
Q 016040 312 MCMITA 317 (396)
Q Consensus 312 ~~~~~~ 317 (396)
..+...
T Consensus 224 ~~i~~~ 229 (404)
T PRK11017 224 FFLGNS 229 (404)
T ss_pred HHHHHH
Confidence 444333
No 70
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.34 E-value=0.0019 Score=62.94 Aligned_cols=243 Identities=12% Similarity=0.043 Sum_probs=127.0
Q ss_pred ccccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccc-cchhhhHHH
Q 016040 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVE 151 (396)
Q Consensus 74 ~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~G-g~y~~~~~~ 151 (396)
+.+|+-++++.+.+=++..+....+..-......+-+.. ++++.+++.++........+..+. +.| ......+..
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~---r~Gl~~~v~sR~~ 85 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGA---KYGLPFPVLSRAS 85 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH---HhCCCcchhhhhh
Confidence 345667899998888877665444433333222111222 555555555554444444444444 444 466777889
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHH--HHHhhhhh
Q 016040 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCN--GIAMSGTR 229 (396)
Q Consensus 152 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~g~k 229 (396)
||.+-+.+.+...++..+...+..+...++.+...+......... .+.+......+..+++..+. +....|.|
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~-----~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~ 160 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLH-----LGNGMTTLELICFIIFWALVLVFLFFFGYK 160 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccc-----cCCcccHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999888888888887776665521110000 00000001233333322222 23456666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccC-C--CC--CCCCCHHHHHHHHHHHHHH-hhchhHHhhhhhhhcCCCCC
Q 016040 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTN-L--DP--FLPYGTEGVFEAAAVVYWS-YTGFDMVATMAEETKKPSRD 303 (396)
Q Consensus 230 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~~~-f~G~e~~~~~~~E~k~p~r~ 303 (396)
...+.+.......++.+++++.......+..+ . .+ -.+.....++.++...+-. ..+....+.++...|+++.
T Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~- 239 (442)
T TIGR00800 161 IRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKT- 239 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccc-
Confidence 65555555554444444433323222221111 1 11 1122344455555443333 3445677888888888754
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 016040 304 IPIGLVGSMCMITAVYCLMALA 325 (396)
Q Consensus 304 ~p~a~~~~~~~~~~~y~~~~~~ 325 (396)
..++...+.....+...+....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~ 261 (442)
T TIGR00800 240 AIWGQFLALPGGFTLTCFFGIL 261 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544444443333
No 71
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.29 E-value=0.0026 Score=62.66 Aligned_cols=282 Identities=13% Similarity=0.101 Sum_probs=155.2
Q ss_pred ccccchhHHHHHhhh-cccc-chhhhccHHhHhhccChH-HHHHH---HHHHHHHHHHHHHHhhhhhcccccccchhhhH
Q 016040 76 QKCLTWWDLTWLCFG-SVVG-SGIFVITGQEAKKHAGPA-IVLSY---LASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~-~~ig-~gi~~~~~~~~~~~~G~~-~~~~~---il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~ 149 (396)
.|+++++ ..+++.+ ...+ ...+..|+.... .|.. .++.. +...+.....+--+.+++ +.++.-..++|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~--~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA--SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 6889999 5555544 3344 566666776654 4444 33222 233344444555566666 4455567999999
Q ss_pred HHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhh
Q 016040 150 VELG-DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (396)
Q Consensus 150 ~~~g-~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (396)
+.|| +..+.+.+....+..+...+....+.+..+...++ .+. .....+....+..+....|.
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~----------------~~~~~~~~~~v~~Yt~~gG~ 175 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISY----------------VTGILIGALIVALYTFLGGL 175 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCH----------------HHHHHHHHHHHHHHHHHcCh
Confidence 9999 89999999999999999999999999888866554 111 11233344555566666777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-c----------cccC---CCCCC-CCCHHHHHH---HHHHHHHHhhchhHH
Q 016040 229 RRSSWLNWISSIVSSCVIVFVIIVGFVH-G----------KTTN---LDPFL-PYGTEGVFE---AAAVVYWSYTGFDMV 290 (396)
Q Consensus 229 k~~~~~~~~~~~~~i~~~i~~~i~~~~~-~----------~~~~---~~~~~-~~~~~~~~~---~~~~~~~~f~G~e~~ 290 (396)
|...+...+=..+.++.+..+.+..... . ..++ ..++. +..+..... .....+..+......
T Consensus 176 ~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 255 (493)
T COG0591 176 RAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHIL 255 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhh
Confidence 7777766555554444444333332221 0 0111 11111 112221111 112223444444555
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHH----Hhhc--ccc----ccccCchHHHHHHHhcchHHHHHHHHH
Q 016040 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALAL----TMMV--KYT----EIDMNAAYSIAFRQIGMNWAKYLVSVC 360 (396)
Q Consensus 291 ~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~----~~~~--~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~ 360 (396)
.+.-. .|++|+ .||..........+.+++..+++ .... +.+ +.+.+..+..+.....++|...+....
T Consensus 256 ~r~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~a 333 (493)
T COG0591 256 PRFMA-AKSIKS-LPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAA 333 (493)
T ss_pred hhhhh-hccHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHH
Confidence 55444 555543 45444443333333333332221 1111 111 123345666777777888888887777
Q ss_pred HHHHHHHHHHHHhhchhHHH
Q 016040 361 ALKGMTTSLLVGSLGQARYT 380 (396)
Q Consensus 361 ~~~~~~~~~~~~~~~~sR~l 380 (396)
++.+.+++..+.+...+-.+
T Consensus 334 ilaAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 334 ILAAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 77777777777766665543
No 72
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.26 E-value=0.0047 Score=61.24 Aligned_cols=283 Identities=10% Similarity=0.003 Sum_probs=138.5
Q ss_pred ccccchhHHHHHhhhccccchhhh-ccHHhHhhccChHHHHHHHHHHHHH-HHHHHHHh-hhh---hcccccccchhhhH
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYT-EFA---VEIPVAGGSFSFLR 149 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~il~~~~~-~~~~~~~~-el~---~~~p~~Gg~y~~~~ 149 (396)
.|++++|-...-..++.++...+. .|+.... .|....+.. ++..+. +.....+. .+. .+.+..-..++|.+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~--~G~~~~~~~-~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL--SGISESWIA-IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH--cCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 688999988877777666654444 3454432 454332211 222222 11111111 111 11223446889999
Q ss_pred HHhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhh
Q 016040 150 VELGD---FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (396)
Q Consensus 150 ~~~g~---~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (396)
+.||+ ....+.+....+..+...+......+..+...++ .+ + ...+.+...+...+....
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i~--------------~--~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-MS--------------Y--ETALWAGAAATILYTFIG 178 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC--------------H--HHHHHHHHHHHHHHHHhh
Confidence 99984 4555666666666666666666666777766655 11 1 123334445567777778
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-c------------cccCCCCCCCCCHHHHHHHHHHHHHHhhchhHHhhh
Q 016040 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVH-G------------KTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATM 293 (396)
Q Consensus 227 g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 293 (396)
|.|...+...+=.++.++..+++.+..+.. + ++++.....+.++..++. .......+.|.....+-
T Consensus 179 Gl~aV~~TD~iQ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~p~~~qR 257 (502)
T PRK15419 179 GFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIIS-LMGWGLGYFGQPHILAR 257 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHHH-HHHHHHHHcCChHHHHh
Confidence 999888887776666655444433332221 1 111111111122332222 11111222332222222
Q ss_pred hhhhcCCCCChhHHHHHHH----HHHHHHHHHHHHHHHh--hcccc----ccccCchHHHHHHHhcchHHHHHHHHHHHH
Q 016040 294 AEETKKPSRDIPIGLVGSM----CMITAVYCLMALALTM--MVKYT----EIDMNAAYSIAFRQIGMNWAKYLVSVCALK 363 (396)
Q Consensus 294 ~~E~k~p~r~~p~a~~~~~----~~~~~~y~~~~~~~~~--~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 363 (396)
.--.||+ |++.++..... .......++....... ..|.. +.+++..+..+..+..++++..++...++.
T Consensus 258 ~~aak~~-~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilA 336 (502)
T PRK15419 258 FMAADSH-HSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILA 336 (502)
T ss_pred heecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 2223554 33333322211 1111111111111111 11210 012344566666667778888888888888
Q ss_pred HHHHHHHHHhhchhHHH
Q 016040 364 GMTTSLLVGSLGQARYT 380 (396)
Q Consensus 364 ~~~~~~~~~~~~~sR~l 380 (396)
+.+++..+.+.+.+-.+
T Consensus 337 A~mST~~s~l~a~ss~~ 353 (502)
T PRK15419 337 AVMSTLSCQLLVCSSAI 353 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887776553
No 73
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.23 E-value=0.0018 Score=62.01 Aligned_cols=290 Identities=11% Similarity=0.035 Sum_probs=158.1
Q ss_pred ccccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHh
Q 016040 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (396)
Q Consensus 74 ~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 152 (396)
+.+|+-++++.+.+=.+......-+..-+..+..+.++. .+++++++-++.......-+..+.++-.+ +-...+..|
T Consensus 36 ~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIp--Fpv~~RaSF 113 (497)
T COG1953 36 AEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIP--FPVLSRASF 113 (497)
T ss_pred cccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCC--chHHHHHHH
Confidence 457889999999887776665555555555555534555 78778877777776666665555555322 455667788
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccc--ccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD--CFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
|-+.+.+-...-.+.-+......+...+..++.++...... +....+ ....-.....+..+++.++-..+...|.+.
T Consensus 114 Gi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~-~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~ 192 (497)
T COG1953 114 GIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPS-LLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMES 192 (497)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-cccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 87777666666666666666666666666666665421111 111110 011112222334444444555566689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC----CC---HHHHHHHHHHHHHHh-hchhHHhhhhhhhcCCCC
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLP----YG---TEGVFEAAAVVYWSY-TGFDMVATMAEETKKPSR 302 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~f-~G~e~~~~~~~E~k~p~r 302 (396)
.+|++.+......+..+.+.+....+.+..+.....| .+ +..++.++....-.| ...-....++++.|+|+
T Consensus 193 Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~~- 271 (497)
T COG1953 193 IRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQK- 271 (497)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCChh-
Confidence 9999999999999988888888777655432221111 11 122333332222112 23445566677777763
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH----HhhccccccccCchHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHH
Q 016040 303 DIPIGLVGSMCMITAVYCLMALAL----TMMVKYTEIDMNAAYSIAFRQIGMNWAKY-LVSVCALKGMTTSLLV 371 (396)
Q Consensus 303 ~~p~a~~~~~~~~~~~y~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 371 (396)
+.-++-++++.+...++-+..... ....+..- -+|. ++..+........ +..+..+++.+++..+
T Consensus 272 ~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~---w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni~ 341 (497)
T COG1953 272 AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETI---WDPL-DIVARFLSGFYAAFLAGLTFAVATISTNIA 341 (497)
T ss_pred hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCccc---CCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhHH
Confidence 444454444444443333333222 22222111 1243 3444444343333 5555555555555444
No 74
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.19 E-value=0.0045 Score=61.94 Aligned_cols=280 Identities=12% Similarity=0.072 Sum_probs=137.3
Q ss_pred ccccchhHHHHHhhhccccchhh-hccHHhHhhccChHHHHHHHHHHHHHH-HHHHHHhhhhhcccccccchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIF-VITGQEAKKHAGPAIVLSYLASGLSAL-LSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~-~~~~~~~~~~~G~~~~~~~il~~~~~~-~~~~~~~el~~~~p~~Gg~y~~~~~~~g 153 (396)
.|++++|.......++.++...+ ..++.... .|...++.. ++..+.+ ...+.+++--++.-. -...+|.++.|+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~--~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT--SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcC
Confidence 68899987755555555554333 33444432 444322211 2233333 334445554444432 357777778887
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 154 -DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 154 -~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
|....+.+....+..+..........+..++.+++ .+ + ...+.+..++...+....|.|...
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-i~--------------~--~~~iii~~~i~~~Yt~~GGm~av~ 204 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-LN--------------Y--HVAVVLVGILMVMYVLFGGMLATT 204 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC--------------H--HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55777777766666666666666677777776665 21 1 112333444556666778898888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc--------------cccCCCCCCCCC----HHHHHHHHHHHHHHhhchhHHhhhh
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVHG--------------KTTNLDPFLPYG----TEGVFEAAAVVYWSYTGFDMVATMA 294 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~f~G~e~~~~~~ 294 (396)
+.+.+=.++.++..+++.+..+... ++.....+.+.+ ....+.......+...|..-...-.
T Consensus 205 ~td~iQ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~ 284 (549)
T TIGR02711 205 WVQIIKAVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRF 284 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheee
Confidence 8777666665554444333222111 011111111111 1112221111222223322222222
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHH---Hhhcccc-cc-------c--cCchHHHHHHHhcchHHHHHHHHHH
Q 016040 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALAL---TMMVKYT-EI-------D--MNAAYSIAFRQIGMNWAKYLVSVCA 361 (396)
Q Consensus 295 ~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~---~~~~~~~-~~-------~--~~~p~~~~~~~~~~~~~~~~~~~~~ 361 (396)
=-.||+ |+.+|+..++......+|+...+.- ....+.+ +. . .+.....+....++.++..++....
T Consensus 285 ~taks~-k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~ 363 (549)
T TIGR02711 285 FTVSDA-KEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVA 363 (549)
T ss_pred eecCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHH
Confidence 233664 6789999988777766665544331 1122211 11 0 0112223334455566555555555
Q ss_pred HHHHHHHHHHHhhchh
Q 016040 362 LKGMTTSLLVGSLGQA 377 (396)
Q Consensus 362 ~~~~~~~~~~~~~~~s 377 (396)
+.+.+++..+.+.+.+
T Consensus 364 ~AA~mST~~s~l~a~s 379 (549)
T TIGR02711 364 FATILAVVAGLTLAGA 379 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555444
No 75
>PRK10484 putative transporter; Provisional
Probab=98.19 E-value=0.0066 Score=60.48 Aligned_cols=291 Identities=11% Similarity=0.019 Sum_probs=144.5
Q ss_pred ccccchhHHHHHhhhccccchhhhc-cHHhHhhccChHH-HHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPAI-VLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~~-~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g 153 (396)
.|+++++-...-..++.++...+.. ++.... .|... .+.+ ...+...+.++.++.--++. ..-..++|.++.||
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~--~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg 112 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA--SGMSVMAWEV-TAAIALIILALIFLPRYLKS-GITTIPDFLEERYD 112 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH--hCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcC
Confidence 6889999887777777666555544 444432 45432 2222 22233333444444333333 23368899999999
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHH--HHHHHHHHHHHhhhhhh
Q 016040 154 DFVAYIAAGNILLEAVVG-AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVA--VLILLVCNGIAMSGTRR 230 (396)
Q Consensus 154 ~~~g~~~g~~~~~~~~~~-~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~g~k~ 230 (396)
+....+.+....+.+... .+......+..+...++ ... .+ + .++.....+. ++..+...+....|.|.
T Consensus 113 ~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~-~~~-~~-----g--i~~~~~~~~~~~~~~~i~~~Yt~~GGl~a 183 (523)
T PRK10484 113 KTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFH-VSE-LL-----G--ISYGAAIWLLVWLIGIIGAIYAVFGGLKA 183 (523)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chh-hc-----C--CcHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 887776666655555443 23333333333333322 000 00 0 0111111111 12233466677788998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc---------------ccccCCCCCC----CCCHHHHHHHHHHH-HHHhhchhHH
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFVH---------------GKTTNLDPFL----PYGTEGVFEAAAVV-YWSYTGFDMV 290 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~~---------------~~~~~~~~~~----~~~~~~~~~~~~~~-~~~f~G~e~~ 290 (396)
..+...+=.++.++..+++.+..+.. .+++.+..+. +.++..++.+.... ++.+.+-...
T Consensus 184 V~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 263 (523)
T PRK10484 184 VAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSI 263 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHH
Confidence 88877666665555443332222111 0111111111 11233333332221 1222222222
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHH---HHHhhccccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 016040 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMAL---ALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTT 367 (396)
Q Consensus 291 ~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (396)
.+-.--.||+ |+..|+...+.....+.++...+ ......|++..+++..+..+..+..++++..++...++.+.++
T Consensus 264 ~qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mS 342 (523)
T PRK10484 264 VQRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILS 342 (523)
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 2333334664 67888888876555444443322 2222334322234556666666777788887777788888888
Q ss_pred HHHHHhhchhHHH
Q 016040 368 SLLVGSLGQARYT 380 (396)
Q Consensus 368 ~~~~~~~~~sR~l 380 (396)
+..+.+.+.+-.+
T Consensus 343 T~~s~l~s~st~~ 355 (523)
T PRK10484 343 TFNGFLNSASTLF 355 (523)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777766554
No 76
>PRK12488 acetate permease; Provisional
Probab=98.19 E-value=0.0041 Score=62.27 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=92.4
Q ss_pred ccccchhHHHHHhhhccccchhhhc-cHHhHhhccChHHHHHHHHHHHHHHH-HHHHHhhhhhcccccccchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPAIVLSYLASGLSALL-SAFCYTEFAVEIPVAGGSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~~~~~~il~~~~~~~-~~~~~~el~~~~p~~Gg~y~~~~~~~g 153 (396)
.|++++|.......++.++...+.. ++... . .|...++ +.++..+.+. ..+.+++--++... -..++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y-~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~ 141 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMF-M-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLA 141 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcC
Confidence 5889999998877777776555544 44443 2 4443222 2223332322 23344444444332 358888888888
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 154 -DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 154 -~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
+....+.+....+..+..........+..+..+++ .+ + ...+.+..++...+....|.|...
T Consensus 142 s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i~--------------~--~~~iii~~~i~~~Yt~~GGm~av~ 204 (549)
T PRK12488 142 QGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-IS--------------Y--LYAVVIVGALMVLYVTFGGMLATT 204 (549)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC--------------H--HHHHHHHHHHHHHHHhccchhHHH
Confidence 56888888777777777777777777777777665 21 1 112333334455566678999888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016040 233 WLNWISSIVSSCVIVFVI 250 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~ 250 (396)
+.+.+=.++.++..+++.
T Consensus 205 ~td~iQ~~im~~~~i~~~ 222 (549)
T PRK12488 205 WVQIIKAVLLLSGTSFMA 222 (549)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877766666655544443
No 77
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.15 E-value=0.0025 Score=60.23 Aligned_cols=289 Identities=16% Similarity=0.059 Sum_probs=149.5
Q ss_pred hhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhh--hcccccccchhhhHHHhchhHHH
Q 016040 81 WWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFA--VEIPVAGGSFSFLRVELGDFVAY 158 (396)
Q Consensus 81 ~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~--~~~p~~Gg~y~~~~~~~g~~~g~ 158 (396)
....+.-++|+.+|.|-.-..+......||.+.++-+++.. +.+-.-+.+.|++ ++...+ ..-. -++..++....
T Consensus 11 rlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~-l~~GiPlli~Ef~iGr~~~~~-~~~a-~~~l~~~~~~~ 87 (439)
T COG0733 11 RLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFL-LLVGIPLLLAEFAIGRRGRKN-AVGA-FRKLAPKKKWE 87 (439)
T ss_pred HHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHH-HHHhHHHHHHHHHhhhhcCCC-hhHH-HHHhccCccch
Confidence 34445567788889888877776665546655333333322 2222334445554 333211 1111 12222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CC--cccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh-H
Q 016040 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDS----NN--SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR-S 231 (396)
Q Consensus 159 ~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~-~ 231 (396)
..||.-.+........|+.-.+-.+.+.... .. .........+...+........++++++...+..+|++. .
T Consensus 88 ~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GI 167 (439)
T COG0733 88 WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGI 167 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 4444444444444444444333333333221 00 111111111222223333444466666777777788877 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc-ccCC----CC-CCCC-CHHHHHHHHHHHHHHhh-chhHHhhhhhhhcCCCCC
Q 016040 232 SWLNWISSIVSSCVIVFVIIVGFVHGK-TTNL----DP-FLPY-GTEGVFEAAAVVYWSYT-GFDMVATMAEETKKPSRD 303 (396)
Q Consensus 232 ~~~~~~~~~~~i~~~i~~~i~~~~~~~-~~~~----~~-~~~~-~~~~~~~~~~~~~~~f~-G~e~~~~~~~E~k~p~r~ 303 (396)
-|.+.++.....+.++++.+-.+.... .+.. .| +..- ++..++.++...+|+.+ |+.....++.-.++ |.|
T Consensus 168 Ek~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~ 246 (439)
T COG0733 168 EKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KSD 246 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccc
Confidence 788888887777766666665544221 1100 01 1111 24567888999999995 99999999998887 578
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh---ccccccccC----chHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHh
Q 016040 304 IPIGLVGSMCMITAVYCLMALALTMM---VKYTEIDMN----AAYSIAFRQIG-MNWAKYLVSVCALKGMTTSLLVGS 373 (396)
Q Consensus 304 ~p~a~~~~~~~~~~~y~~~~~~~~~~---~~~~~~~~~----~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (396)
+++.-..........-++..+.+.-. .+.+.-.+. ..+..++++.+ +.....++.....++.+++..+.+
T Consensus 247 l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSml 324 (439)
T COG0733 247 LVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISML 324 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877777666666655554322 222211111 24566777664 233334444455555555555443
No 78
>PRK09395 actP acetate permease; Provisional
Probab=98.15 E-value=0.009 Score=59.90 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=87.4
Q ss_pred ccccchhHHHHHhhhccccchhhhc-cHHhHhhccChHHHHHHHHHHHHHHH-HHHHHhhhhhcccccccchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPAIVLSYLASGLSALL-SAFCYTEFAVEIPVAGGSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~~~~~~il~~~~~~~-~~~~~~el~~~~p~~Gg~y~~~~~~~g 153 (396)
.|++++|......+++.++...+.. ++.... .|...++ +.++..+..+ ..+.+++--++.. .-..++|.++.||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~--~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Ryg 143 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT--SGYDGLI-YSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLK 143 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH--hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcC
Confidence 6889998877766666666444443 444432 4543322 2222222222 2333333223222 2347777778898
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 154 -DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 154 -~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
+....+.+....+..+..........+..+....+ .+ + ...+.+..++...+....|.|...
T Consensus 144 s~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~--------------~--~~~ili~~~i~~iYt~~GGm~av~ 206 (551)
T PRK09395 144 QGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LN--------------Y--HVAVVLVGVLMMVYVLFGGMLATT 206 (551)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC--------------H--HHHHHHHHHHHHHHHhhcchHHHH
Confidence 55788888777777777666666667766666655 21 1 123334444556677778999888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016040 233 WLNWISSIVSSCVIVFV 249 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~ 249 (396)
+.+.+=.++.++..+++
T Consensus 207 ~TD~iQ~iim~~g~ii~ 223 (551)
T PRK09395 207 WVQIIKAVLLLSGATFM 223 (551)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87776666555544443
No 79
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.14 E-value=0.002 Score=60.99 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=126.7
Q ss_pred HHHHHHHHHhhhhhccc--ccccchhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccc
Q 016040 123 SALLSAFCYTEFAVEIP--VAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD 200 (396)
Q Consensus 123 ~~~~~~~~~~el~~~~p--~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (396)
++.+..+.+-|++.|+- ..-+..+-.++.+||.+++.......+.............+.-++.+.+ .+
T Consensus 21 l~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-~~--------- 90 (358)
T PF01566_consen 21 LSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-IP--------- 90 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC---------
Confidence 44445556666666665 2235777778999999999988888887777777777776666665543 11
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc-ccccc----CCC-CCCCCCHHHHH
Q 016040 201 CFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV-HGKTT----NLD-PFLPYGTEGVF 274 (396)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~-~~~~~----~~~-~~~~~~~~~~~ 274 (396)
......+..+.+..+.+...+..+++++++..+..+..+.+++..+. +.++. ++. |-.|. ...+.
T Consensus 91 --------~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~-~~~~~ 161 (358)
T PF01566_consen 91 --------LWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPG-PGSLL 161 (358)
T ss_pred --------cHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcc-hhHHH
Confidence 11233333333333333224456777777666665554444433332 22221 111 22222 12233
Q ss_pred HHHHHHHHHhhchhHHhhhhhhhc---CCC---CC-hhHHHHHHHHHHHHHHHHHHHHH----Hhhc-cc-cccccCchH
Q 016040 275 EAAAVVYWSYTGFDMVATMAEETK---KPS---RD-IPIGLVGSMCMITAVYCLMALAL----TMMV-KY-TEIDMNAAY 341 (396)
Q Consensus 275 ~~~~~~~~~f~G~e~~~~~~~E~k---~p~---r~-~p~a~~~~~~~~~~~y~~~~~~~----~~~~-~~-~~~~~~~p~ 341 (396)
..+...-+....++...+-+-..+ +++ ++ --|....-..+..+...+.+.++ .... +. .+..+.+..
T Consensus 162 ~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~ 241 (358)
T PF01566_consen 162 FAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQA 241 (358)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 223223333333333332222111 110 11 01222222222222222222221 1111 11 122333455
Q ss_pred HHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHh
Q 016040 342 SIAFRQIGM-NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (396)
Q Consensus 342 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~ 385 (396)
...++...| ++...++.++++.+.+++..+...+.++.+.+.-+
T Consensus 242 ~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 242 AQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred HHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 566676666 79999999999999999999999999998877653
No 80
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.13 E-value=0.0022 Score=61.13 Aligned_cols=276 Identities=10% Similarity=0.038 Sum_probs=147.6
Q ss_pred HHhhhccccchhhhccHHhHhhccChH---HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHHH
Q 016040 86 WLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG 162 (396)
Q Consensus 86 ~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~ 162 (396)
.+.++.-.|.|-+.-|...-.. +|.. +.+++++.++..=..+..- .. ..||.+.-..+..||+.+.+...
T Consensus 15 ~~LFamFFGAGNLIFPp~LG~~-aG~~~~~a~~GF~iT~VglPlLgiia----va--~~~g~~~~l~~rv~~~f~~~f~~ 87 (439)
T PRK15433 15 FMTFALFVGAGNIIFPPMVGLQ-AGEHVWTAAFGFLITAVGLPVLTVVA----LA--KVGGGVDSLSTPIGKVAGVLLAT 87 (439)
T ss_pred HHHHHHHhcCcchhccHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH----Hh--hcCCCHHHHhhhcchHHHHHHHH
Confidence 3444445688888888877655 6543 5556666555444333222 11 13344455556667877776654
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhhccCCcccccccc-cccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 016040 163 NILLEAVV--GAAGLARSWSSYLASMIDSNNSDLLRFKV-DCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISS 239 (396)
Q Consensus 163 ~~~~~~~~--~~a~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~ 239 (396)
...+.--. ..+-.+ ...|++.. |-.+++.....+..+++..++.++.++.-|...++-++++
T Consensus 88 ~i~l~IGP~~aiPRta---------------avsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LT 152 (439)
T PRK15433 88 VCYLAVGPLFATPRTA---------------TVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLA 152 (439)
T ss_pred HHHHHHhhccccCCcc---------------ccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHH
Confidence 33322211 111111 11111111 1111111123467788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHH--------HHHHhhchhHHhhhhhhhcCCCCChhHHHHHH
Q 016040 240 IVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAV--------VYWSYTGFDMVATMAEETKKPSRDIPIGLVGS 311 (396)
Q Consensus 240 ~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~ 311 (396)
.+.++.++++++.++.+...+...+-.+..-..+..++.. +...|...-.-+--....+++| ++.|....+
T Consensus 153 P~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~~-~~~k~t~~a 231 (439)
T PRK15433 153 PLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEAR-LLTRYTVWA 231 (439)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHH
Confidence 9999999999888887632111001000000112223222 2223333222222333355543 344444443
Q ss_pred ----HHHHHHHHHHHHHHHHhhcc-cccc-ccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 016040 312 ----MCMITAVYCLMALALTMMVK-YTEI-DMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (396)
Q Consensus 312 ----~~~~~~~y~~~~~~~~~~~~-~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (396)
.....+.|......-....+ .++. +...-.....+...++++..++.+.+.++++++..+..++.++......
T Consensus 232 g~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~ 310 (439)
T PRK15433 232 GLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV 310 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444443333222222 1111 1122233344456679999999999999999999999999999877654
No 81
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.02 E-value=0.011 Score=59.42 Aligned_cols=148 Identities=12% Similarity=0.081 Sum_probs=90.4
Q ss_pred ccccchhHHHHHhhhccccchhhhc-cHHhHhhccChHH-H--HHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHH
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPAI-V--LSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~~-~--~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~ 151 (396)
.|++++|.......++.++...+.. ++.... .|... + +++.++ ....++.+++.-++... -..++|.++.
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~--~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~R 104 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF--LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDR 104 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH--hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHH
Confidence 6889999988777777776544443 444432 34332 2 223222 22345666666666643 3699999999
Q ss_pred hch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 152 LGD-FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 152 ~g~-~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
||+ ....+.+....+..+...+......+..++.+.+ .+ + ...+.+..++.+.+....|.|.
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-i~--------------~--~~~iii~~~i~~iYt~~GG~~a 167 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-VD--------------F--ETGVFIGMAIVFFYAVLGGMKG 167 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC--------------H--HHHHHHHHHHHHHHHHhhhHHH
Confidence 984 4677777777777777777777777777777665 21 1 1122233344566666788888
Q ss_pred HHHHHHHHHHHHHHHH
Q 016040 231 SSWLNWISSIVSSCVI 246 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~ 246 (396)
..+...+=.++.++..
T Consensus 168 V~~TD~iQ~iim~ig~ 183 (552)
T TIGR03648 168 VTWTQVAQYIVLIVAY 183 (552)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8887766655555443
No 82
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.97 E-value=0.017 Score=55.97 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccc-cchhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016040 110 GPAIVLSYLASGLSALLSAFCYTEFAVEIP-VAG-GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMI 187 (396)
Q Consensus 110 G~~~~~~~il~~~~~~~~~~~~~el~~~~p-~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~ 187 (396)
|...+|..+++.++ .+.+-|++.|.- ..| +..+-+++.+|+.++++......+........+..+.+.-++.++
T Consensus 64 Gy~LLW~llls~~~----~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 64 GYTLLWVILLSNLM----AMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444 445555555554 233 688888999999888877666666666666666666665555544
Q ss_pred c
Q 016040 188 D 188 (396)
Q Consensus 188 ~ 188 (396)
+
T Consensus 140 g 140 (439)
T PRK00701 140 G 140 (439)
T ss_pred C
Confidence 4
No 83
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.94 E-value=0.021 Score=54.60 Aligned_cols=202 Identities=14% Similarity=0.098 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 016040 112 AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNN 191 (396)
Q Consensus 112 ~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~ 191 (396)
.++++.+++.++........+..+.++.. ......+..||++.+.+.+....+..+...+..+...++.++...+. .
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~-~ 106 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGR-L 106 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 36666666665555544444444444322 36667788999999999999999999999999998888888887651 1
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCHH
Q 016040 192 SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTE 271 (396)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 271 (396)
+ + ... ......++.++.......|.|...+++.+...+..+..+...+....+.+...... .+.. .
T Consensus 107 ---~----~---~~~--~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~ 172 (386)
T TIGR02358 107 ---F----G---EES--PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWN-RAGD-M 172 (386)
T ss_pred ---c----C---CCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcC-CCCC-c
Confidence 0 0 011 11222333344666667899999999999888777766665554444433221111 1111 2
Q ss_pred HHHHHHHHHHHH-hhchhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016040 272 GVFEAAAVVYWS-YTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVK 331 (396)
Q Consensus 272 ~~~~~~~~~~~~-f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~ 331 (396)
.+..+....... ..+....+.++...|+||+ .-++...+..+...+..+.........+
T Consensus 173 s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a~~ 232 (386)
T TIGR02358 173 SFAVAVELVIAMPLSWLPLIADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLATG 232 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 233333222211 1223346778888887644 5667777766666666665555444333
No 84
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.85 E-value=0.0013 Score=64.20 Aligned_cols=241 Identities=15% Similarity=0.080 Sum_probs=116.6
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccc-cchhhhHHHh
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVEL 152 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~G-g~y~~~~~~~ 152 (396)
.+|+-++++.+.+=++..+....+..-......+-+.. ++++.+++.++........+.++ |+.| ......+..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G---~r~Gl~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG---PRTGLPTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH---HCC---HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc---cccCCCchhcchhcc
Confidence 36777889998887776655444433332222212333 66666666665555444444444 4444 3566667899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccc-ccCCCCCchhHHHHHHHHHHHHHHhhhhhhH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD-CFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 231 (396)
|.+.+.+.+....+..+...+......++.+....+.... .+. ..+ ..........+..++..++.....+.|.|..
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFG-SFL-WIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HH-----------HHHHHHHHHHHHHHCTHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-cch-hhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9998899998888888888888888888888887762111 000 000 0000011112233334445566677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCC--CCCCCCHHHHHHHHHHHHHHhh-chhHHhhhhhhhcCCCCChhHHH
Q 016040 232 SWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--PFLPYGTEGVFEAAAVVYWSYT-GFDMVATMAEETKKPSRDIPIGL 308 (396)
Q Consensus 232 ~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~-G~e~~~~~~~E~k~p~r~~p~a~ 308 (396)
.+++.+...+..+..+...+......+..... +..+.....+..++....-.+. ..-..+.++...|+++ +..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~-~~~~~~ 238 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDT-SAWWGF 238 (440)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HH-HHHHHH
T ss_pred HhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCC-CcEEEE
Confidence 88887776655554444433333332221111 1111111123333322222221 2223346677777653 345555
Q ss_pred HHHHHHHHHHHHH
Q 016040 309 VGSMCMITAVYCL 321 (396)
Q Consensus 309 ~~~~~~~~~~y~~ 321 (396)
..+.....+...+
T Consensus 239 ~~~~~~~~~~~~~ 251 (440)
T PF02133_consen 239 WLGFPGGFIPFVL 251 (440)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhhhHHHHHHH
Confidence 5555444444433
No 85
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.85 E-value=0.026 Score=55.04 Aligned_cols=302 Identities=14% Similarity=0.109 Sum_probs=138.5
Q ss_pred cccccchhHHHHHhhhccccchhhhcc--HHhHhhc-------cC--------------hHHHHHHHHHHHHHHHHHHHH
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVIT--GQEAKKH-------AG--------------PAIVLSYLASGLSALLSAFCY 131 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~--~~~~~~~-------~G--------------~~~~~~~il~~~~~~~~~~~~ 131 (396)
-|.+++.++.++|.+++-+|.|+.... ....... ++ -+.+.+|.+-.+..+..++.+
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 366799999999999988888875432 0110000 01 013456777778888888877
Q ss_pred hhhhhcccccccchhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCcccccccccccCCCCC
Q 016040 132 TEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLAR----SWSSYLASMIDSNNSDLLRFKVDCFADGFN 207 (396)
Q Consensus 132 ~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 207 (396)
..-.+...-+...+....+...+.+|.+.=....++.+...+.... ..+.-++...+ .++ +..
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~G-i~~------------~~~ 217 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFG-IPN------------TFG 217 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SSS------------THH
T ss_pred eecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC-CCC------------chH
Confidence 7644433344445554444343445665555555555554444333 34444444444 222 222
Q ss_pred chhHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHHHHhhc-----c------cc---cc-CCCCCCCC
Q 016040 208 LLDPVAVLILLVCNGIAMSG----TRRSSWLNWISSIVSSCVIVFVIIVGFV-----H------GK---TT-NLDPFLPY 268 (396)
Q Consensus 208 ~~~~~~~~~~~~~~~i~~~g----~k~~~~~~~~~~~~~i~~~i~~~i~~~~-----~------~~---~~-~~~~~~~~ 268 (396)
....+.+++.++.+.....| +|+..+++..+.+..++.++++.=..+. . .+ .. +..+..+.
T Consensus 218 ~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~ 297 (485)
T PF02028_consen 218 LQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNS 297 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCc
Confidence 22334444444444555544 4555555544444333333322100000 0 00 00 11133333
Q ss_pred C-HHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccc---------cC
Q 016040 269 G-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID---------MN 338 (396)
Q Consensus 269 ~-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~---------~~ 338 (396)
+ |..-...+..+-|.--+.-....+++=.|- |+++--++..++.-.+..++.........=..+.. ..
T Consensus 298 ~~w~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~ 375 (485)
T PF02028_consen 298 GQWPQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQ 375 (485)
T ss_dssp THHHHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhc
Confidence 4 544444443333333333444445554454 88877776666655555444333222211111111 11
Q ss_pred chHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC-CCch
Q 016040 339 AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH-MIPP 391 (396)
Q Consensus 339 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg-~lP~ 391 (396)
++-..+++.+..-++..++.+..++..+....+..-+.+..+..++.+| .=|+
T Consensus 376 g~~~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~ 429 (485)
T PF02028_consen 376 GPEAALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPP 429 (485)
T ss_dssp -HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-
T ss_pred chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCc
Confidence 2222222222222333455555555555556666667777888887664 3343
No 86
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.77 E-value=0.035 Score=52.02 Aligned_cols=279 Identities=12% Similarity=0.146 Sum_probs=150.4
Q ss_pred hHHHHHhhhccccchhhhccHHhHhhccChH---HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHH
Q 016040 82 WDLTWLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (396)
Q Consensus 82 ~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 158 (396)
+..-.|.++.-.|.|-+.-|...-.. .|.. +.+++++.++..=.....- . -..||.+.=..+..||+.|.
T Consensus 8 ~~~GfmLFalFFGAGNlIFPP~LG~~-aG~~~~~A~lGFllTgVglPlLgiIa-----~-a~~g~~~~~l~~~i~~~fg~ 80 (431)
T COG1114 8 IALGFMLFALFFGAGNLIFPPMLGLH-AGEHVWPAILGFLLTGVGLPLLGIIA-----V-ALYGGGVESLATRIGPWFGV 80 (431)
T ss_pred HHHHHHHHHHHhcCCCccCChhhhhh-cCccHHHHHHHHHHHHhhHHHHHHHH-----h-hccCCCHHHHhhhccchHHH
Confidence 33444555555677777777765444 5543 5555666555433322221 1 13455555566677888887
Q ss_pred HHHHHHHHHHHH--HHHHHH-HHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 016040 159 IAAGNILLEAVV--GAAGLA-RSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLN 235 (396)
Q Consensus 159 ~~g~~~~~~~~~--~~a~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 235 (396)
+......+.--. ..+-.. .++..-+..+.+ ..+.....+..++...+..++.+..-|..-|+-
T Consensus 81 ~f~~~iyLsIGPffAiPRt~~vsfe~~i~p~~~--------------~~~~~~l~ifs~ifF~ia~~~sl~psklid~vG 146 (431)
T COG1114 81 LFAIAIYLSIGPFFAIPRTGAVSFEVGISPLLG--------------DSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVG 146 (431)
T ss_pred HHHHHHHHHhcccccCCcccchhHHHhhhcccC--------------CCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 666443332211 111111 111111111111 012223557778888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCC--C-CCCCCCH-HHHHHHH----HHHHHHhhchhHHhhhhhhhcCCCCChhHH
Q 016040 236 WISSIVSSCVIVFVIIVGFVHGKTTNL--D-PFLPYGT-EGVFEAA----AVVYWSYTGFDMVATMAEETKKPSRDIPIG 307 (396)
Q Consensus 236 ~~~~~~~i~~~i~~~i~~~~~~~~~~~--~-~~~~~~~-~~~~~~~----~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a 307 (396)
++++.+.++.++++.+..+........ . ...+..+ .|++.|. ..+..+|+..-.-+.-..-.+++ |+..|-
T Consensus 147 k~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~ 225 (431)
T COG1114 147 KFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKY 225 (431)
T ss_pred HHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHH
Confidence 999999999998888886664332111 0 1111111 2222222 22344455444444334444444 344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-----ccc-CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 016040 308 LVGSMCMITAVYCLMALALTMMVKYTE-----IDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (396)
Q Consensus 308 ~~~~~~~~~~~y~~~~~~~~~~~~~~~-----~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (396)
...+-.+..+...+.-..+....+... .++ ..-+....++..|+.+..++.+...++|+.+..+...+++-...
T Consensus 226 ~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~ 305 (431)
T COG1114 226 TIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFS 305 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444444433334333332221 111 12334455566778888999999999999999988887776654
Q ss_pred H
Q 016040 382 Q 382 (396)
Q Consensus 382 ~ 382 (396)
.
T Consensus 306 ~ 306 (431)
T COG1114 306 K 306 (431)
T ss_pred H
Confidence 4
No 87
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00028 Score=67.22 Aligned_cols=250 Identities=18% Similarity=0.124 Sum_probs=137.6
Q ss_pred ccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhch
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~ 154 (396)
+++-+.+..+.-...++.|+|++..|..- +. .|-. .++...+.+++.....+.+.+.+.+.++. ..-.-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~af-k~-~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAF-KT-AGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHH-HH-hcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 45567788888888899999999888765 34 5544 66777778888888888888888888766 444555566666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 016040 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (396)
Q Consensus 155 ~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 234 (396)
..........-...+. +.++....++.+..+......+++... ++.+..-...+....++.-+.+. +.... -+.
T Consensus 80 ~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~--~~~~~~~~ill~~~~~i~pLsl~--k~l~~-Lk~ 153 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGS--HYLDRNFLILLVLLFIILPLSLL--KNLDS-LKY 153 (411)
T ss_pred CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhccccccccc--ccccceeEeehHHHHHHHHHHHH--Hhhhh-HHH
Confidence 5422221111111111 111111112222211110000111000 00111100112222222222222 22222 222
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc--cCCCCCCCCCH--HHHHHHHHHHHHHhhchhHHhhhhhhhcCCC-CChhHHHH
Q 016040 235 NWISSIVSSCVIVFVIIVGFVHGKT--TNLDPFLPYGT--EGVFEAAAVVYWSYTGFDMVATMAEETKKPS-RDIPIGLV 309 (396)
Q Consensus 235 ~~~~~~~~i~~~i~~~i~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~-r~~p~a~~ 309 (396)
........++.++.+.+....+... .......+.+. .+++.++....++|.+.+.......|+|||+ |++.+...
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~ 233 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSN 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHH
Confidence 3333333333333333333333211 11112223332 5788899999999999999999999999996 67899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q 016040 310 GSMCMITAVYCLMALALTMMVKYTE 334 (396)
Q Consensus 310 ~~~~~~~~~y~~~~~~~~~~~~~~~ 334 (396)
.+...+.++|....+..+...+++.
T Consensus 234 ~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 234 IAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHhhhheecccc
Confidence 9999999999999988888777643
No 88
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.17 Score=48.39 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhhhccc-ccc-cchhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc
Q 016040 122 LSALLSAFCYTEFAVEIP-VAG-GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKV 199 (396)
Q Consensus 122 ~~~~~~~~~~~el~~~~p-~~G-g~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~ 199 (396)
++..+.++..=|++.+.- .+| +.-+-+++.++|.+++.......+..+.+.-.+....+.-++.++. .
T Consensus 55 lls~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~-i--------- 124 (416)
T COG1914 55 LLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG-I--------- 124 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C---------
Confidence 333334444444444443 233 4777788889999998888877777777777777777777777665 1
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016040 200 DCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG 257 (396)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~ 257 (396)
...++.++..+..++...+ |-.++++.+...+.++..+.+....+...
T Consensus 125 ---------p~~~g~iItav~~~iil~~-~~~r~~E~~v~~l~~~~~i~~~~~~~~~~ 172 (416)
T COG1914 125 ---------PLIIGAVITAVDVLIILLL-KGYRLLERVVLILGLVLVILFVYVAFVAP 172 (416)
T ss_pred ---------hHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 1133333333333333322 25667777777777666666666555543
No 89
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.94 E-value=0.34 Score=47.19 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=19.9
Q ss_pred cccccchhHHHHHhhhccccchhhhc
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVI 100 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~ 100 (396)
-|-+++.++.++|.+++-+|.|+++.
T Consensus 84 ~~PEfs~~SW~aMLFaAGmGigl~fw 109 (537)
T COG1292 84 EKPEFSTLSWLAMLFAAGMGIGLLFW 109 (537)
T ss_pred CCCCcchhHHHHHHHHcccCceeeEe
Confidence 35678888899999988878777543
No 90
>PRK09950 putative transporter; Provisional
Probab=96.91 E-value=0.29 Score=48.01 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=19.9
Q ss_pred ccccchhHHHHHhhhccccchhhh
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFV 99 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~ 99 (396)
|.+++.++.++|.+++-+|.|+++
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllf 104 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLY 104 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHH
Confidence 678999999999999888877653
No 91
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=96.81 E-value=0.00097 Score=60.17 Aligned_cols=239 Identities=11% Similarity=0.053 Sum_probs=142.4
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------chhh
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGG-------SFSF 147 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg-------~y~~ 147 (396)
-+.+++.|+...=.-.++=|.-+..+|..+. .||.+.+.+.+..+.++-.++-.+.|-- .-|...| .|.-
T Consensus 113 ~~~kI~a~qAaWNVTNAIQGMFivgLP~Avl--hGGyw~i~amvg~A~vCcyTGk~Li~CL-YE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 113 ASEKISALQAAWNVTNAIQGMFIVGLPIAVL--HGGYWSIGAMVGVAYVCCYTGKLLIECL-YENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCccHHHHHhhhhhhhhheeeEeccceeee--EcchhHHHHHHhhhhhhhccchhhhhhh-ccCCCCCcEEEeehhHHH
Confidence 3467888888776666555666666666653 3777777666666655555444443321 1111122 3333
Q ss_pred hHHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHh
Q 016040 148 LRVE-LGDFVA-YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM 225 (396)
Q Consensus 148 ~~~~-~g~~~g-~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 225 (396)
+... ++|.+| .....+.+...+.++..+....++.+...++. .+-+..-+.++.-+.++-+.++
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~------------~svd~~sWm~i~~a~LLpc~FL-- 255 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG------------LSVDKASWMMITSASLLPCSFL-- 255 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC------------CCccccchhhhhhHHHhhhHHH--
Confidence 3333 565555 66677788888888888888888888877762 1112212234544555555544
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc-cccCCCCCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCCh
Q 016040 226 SGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG-KTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (396)
Q Consensus 226 ~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~ 304 (396)
...|...++..+.+..+++.=++++..++... ++.....-+.-....+-..+.++.|+|+..-...++-+.||||.+ +
T Consensus 256 k~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~-F 334 (524)
T KOG4303|consen 256 KDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ-F 334 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH-h
Confidence 46678888888888888887776666665532 222111001111122223344556777777777888889999864 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 016040 305 PIGLVGSMCMITAVYCLMALALTMMVK 331 (396)
Q Consensus 305 p~a~~~~~~~~~~~y~~~~~~~~~~~~ 331 (396)
..-+-++-+...++=.++....+....
T Consensus 335 n~Ml~WsHIAAaVfK~~Fg~~~fLTf~ 361 (524)
T KOG4303|consen 335 NVMLKWSHIAAAVFKVVFGMLGFLTFG 361 (524)
T ss_pred eeeeehHHHHHHHHHHHHHHheeeeec
Confidence 666777777777777766666555444
No 92
>PLN00151 potassium transporter; Provisional
Probab=96.70 E-value=0.14 Score=52.19 Aligned_cols=173 Identities=12% Similarity=0.006 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCHHHH--------HHHHHHH
Q 016040 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGV--------FEAAAVV 280 (396)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 280 (396)
...+++++++.++.+.-+|....+++-.-...+=++.+..+.+..+.+.++.-+..++|.-...+ +..+..+
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw~~LGgV 353 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKAWSALGGC 353 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCceEEEecce
Confidence 45688888888888888887666655544444334444445555555555544444433211111 1234556
Q ss_pred HHHhhchhHHhhhhhhhcCCCCChhHHHHHHHHH-HHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHHH
Q 016040 281 YWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCM-ITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSV 359 (396)
Q Consensus 281 ~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 359 (396)
+.+++|-|+.-.=-+.. .+|.+.+|-..-+.= ..+-|+.- .+....-| +. ..+|+. ....+++.+-+.+
T Consensus 354 vLciTGaEALfADLGHF--g~~sIqiaw~~~V~P~LlL~Y~GQ-aA~L~~~p-~~--~~npFy----~svP~~~~wP~~v 423 (852)
T PLN00151 354 VLCATGSEAMFADLGYF--SVRSIQLAFTCLVLPCLLLAYMGQ-AAYLMKNP-DS--AEQIFF----SSVPSSLFWPVFL 423 (852)
T ss_pred eeeeccchhhhcccCCC--CccceeeeehhhHHHHHHHHHcch-HHHHhcCc-cc--ccCcHH----HhCCchhHHHHHH
Confidence 67788888765433322 235555544332222 22223322 22222222 11 234443 2233444443333
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 360 CALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 360 ~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
+..++..-+..+.+.+.-.+..+.-+=|.+|+
T Consensus 424 lAtlAaIIASQA~ISgtFSii~Qai~Lg~fPR 455 (852)
T PLN00151 424 IANLAALIASRAMTTATFSCIKQSMALGCFPR 455 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33333333333334444455666667788884
No 93
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.51 E-value=0.24 Score=47.28 Aligned_cols=179 Identities=8% Similarity=-0.012 Sum_probs=91.4
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhc
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g 153 (396)
-+|+-++|+.+.+=.+..++.+-+...+..+..+-.++ .|..++++-++.......=+.-++.+--+ +-.-.+-.||
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns~~G~~yhIs--Fpv~sR~sFG 129 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNSRPGSDYHIS--FPVLSRSSFG 129 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHccCCCcccccc--eeeeeeeehh
Confidence 47889999999887777777777777676665533344 77766666665555444333333332111 1111122344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCC---CCCchhHHHHHHHHHHHHHHhhhhhh
Q 016040 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFAD---GFNLLDPVAVLILLVCNGIAMSGTRR 230 (396)
Q Consensus 154 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~g~k~ 230 (396)
-+.+-.--..-.+..+......+...++.++.++..+... + .+.|++.. ..+...+..+++-++.....+++...
T Consensus 130 iygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~-~-~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~p~~ 207 (572)
T KOG2466|consen 130 IYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKS-F-SHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFPPYK 207 (572)
T ss_pred hhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhh-h-hcCccccCCCCCchHHHHHHHHHHHHhhheeeccHHH
Confidence 3333222233333344444455555555555544321111 0 11122222 22222334444444455555577777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 016040 231 SSWLNWISSIVSSCVIVFVIIVGFVHG 257 (396)
Q Consensus 231 ~~~~~~~~~~~~i~~~i~~~i~~~~~~ 257 (396)
..++...-.+......+.+.|..+.+.
T Consensus 208 ir~lf~~ka~~t~fA~~g~LIw~l~kA 234 (572)
T KOG2466|consen 208 IRHLFTWKAVLTPFAAFGFLIWLLKKA 234 (572)
T ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 777777766666666666666666543
No 94
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=96.13 E-value=1.5 Score=43.05 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=20.0
Q ss_pred ccccchhHHHHHhhhccccchhhh
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFV 99 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~ 99 (396)
|.+++.++.++|.+++-+|.|+++
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllf 106 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLF 106 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhh
Confidence 678999999999999888877754
No 95
>PRK09928 choline transport protein BetT; Provisional
Probab=96.08 E-value=2 Score=43.71 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=18.7
Q ss_pred ccccchhHHHHHhhhccccchhhh
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFV 99 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~ 99 (396)
|.+++.++.++|.+++-+|+|+++
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhhee
Confidence 567888899999888877777643
No 96
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.64 E-value=1.9 Score=40.13 Aligned_cols=276 Identities=12% Similarity=0.056 Sum_probs=148.8
Q ss_pred ccccchhHHHHHhhhccccchhh-hccHHhHhhccChHHHHHHHHHHHHHHH-HHHHHhhhhhccc------ccccchhh
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIF-VITGQEAKKHAGPAIVLSYLASGLSALL-SAFCYTEFAVEIP------VAGGSFSF 147 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~-~~~~~~~~~~~G~~~~~~~il~~~~~~~-~~~~~~el~~~~p------~~Gg~y~~ 147 (396)
.|+++.+-+.+...++=+++..| ..|+..... | ++|++-..+..+ +.+.+.-++.++. ++=...++
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~-G-----lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~ 111 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKY-G-----LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDL 111 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHh-c-----hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHH
Confidence 46666665554444443443333 223333332 1 234444444444 2333444443332 12234555
Q ss_pred hH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhh
Q 016040 148 LR-VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (396)
Q Consensus 148 ~~-~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (396)
.+ |.-++..-++.+...++.....+..--...+..+....+ .+ |. ....+-...+..+....
T Consensus 112 l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g-id---Y~-------------tgL~ifa~~V~iYt~fG 174 (473)
T COG4145 112 LFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG-ID---YT-------------TGLLIFAVSVAIYTAFG 174 (473)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC-CC---ch-------------hhHHHHHHHHHHHHhhc
Confidence 54 446678889999999999999998888889998888877 21 11 11112222344555667
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhccc-------------cccCCCCCCCCC---HHHHHHHHHHHHHHhhchhHH
Q 016040 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHG-------------KTTNLDPFLPYG---TEGVFEAAAVVYWSYTGFDMV 290 (396)
Q Consensus 227 g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~-------------~~~~~~~~~~~~---~~~~~~~~~~~~~~f~G~e~~ 290 (396)
|.|.......+=..++++.-+++.+..+... +++-..|..... ..-+.+-...+.+.-.|....
T Consensus 175 GFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t 254 (473)
T COG4145 175 GFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHT 254 (473)
T ss_pred ceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHH
Confidence 8888777666666666665555544433321 122111221111 111222223333444454444
Q ss_pred hhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHh---hccccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 016040 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTM---MVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTT 367 (396)
Q Consensus 291 ~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (396)
..-.-..|| +|.+.+++.++..++.++-+.+-++-.. +.|+ --..|.-...+.-+...+....++....+.+.++
T Consensus 255 ~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPd-lt~~D~Vip~lalkvlpp~~agifl~apmaAiMS 332 (473)
T COG4145 255 AVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPD-LTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMS 332 (473)
T ss_pred HHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCC-CCccchhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444444577 4778999999988888877776655222 2232 2223444444555566666666777777777777
Q ss_pred HHHHHhhch
Q 016040 368 SLLVGSLGQ 376 (396)
Q Consensus 368 ~~~~~~~~~ 376 (396)
+..+.+.-.
T Consensus 333 TIds~L~~~ 341 (473)
T COG4145 333 TINSQLLQS 341 (473)
T ss_pred HHHHHHHHH
Confidence 777655433
No 97
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=95.59 E-value=2.2 Score=40.68 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=35.1
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCchhhh
Q 016040 342 SIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFA 394 (396)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~ 394 (396)
....+...+++...++.+.++.+..++..+..++..=+.... .+.-.|+++.
T Consensus 283 ~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf-l~~~~~~~~r 334 (390)
T TIGR01197 283 GVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF-LNWRWSPWLR 334 (390)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-cCCCCcHHHH
Confidence 344455667888899999999998888888877655555544 3333455543
No 98
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=95.42 E-value=2.8 Score=40.70 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=18.1
Q ss_pred ccccchhHHHHHhhhccccchhhh
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFV 99 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~ 99 (396)
|.+++.++.++|.+++-+|.|+++
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllf 57 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMF 57 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhh
Confidence 566888888888888777776643
No 99
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.40 E-value=2.7 Score=40.44 Aligned_cols=192 Identities=9% Similarity=0.087 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 016040 113 IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR-VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNN 191 (396)
Q Consensus 113 ~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~-~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~ 191 (396)
..++|..+.++ ..++.+|--+++-+- .+-++.. |.-.+....+.++..++....+...-....+..+..+++ .+
T Consensus 79 Y~iG~~~Gy~i---~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-v~ 153 (529)
T COG4147 79 YSIGWTGGYPI---LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-VP 153 (529)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-CC
Confidence 44445544433 456667766666332 2444444 555566777777777777777777777777777777776 22
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc---------
Q 016040 192 SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK--TT--------- 260 (396)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~--~~--------- 260 (396)
. ...+.++.++...+..+.|.|...|.|.+=.++.+...++..+....+.. +.
T Consensus 154 ~----------------~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~ 217 (529)
T COG4147 154 Y----------------HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTV 217 (529)
T ss_pred c----------------eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhc
Confidence 1 11344555566677777899999988876665555544444433322211 11
Q ss_pred ----CCCCCCCCCH--HHHHHHHHHHHHHhhchhHHhhhhhhh-cCCC-CChhHHHHHHHHHHHHHHHHHHHH
Q 016040 261 ----NLDPFLPYGT--EGVFEAAAVVYWSYTGFDMVATMAEET-KKPS-RDIPIGLVGSMCMITAVYCLMALA 325 (396)
Q Consensus 261 ----~~~~~~~~~~--~~~~~~~~~~~~~f~G~e~~~~~~~E~-k~p~-r~~p~a~~~~~~~~~~~y~~~~~~ 325 (396)
+.....+++. .+.+..+...+--+.|.-...|.--.. --|+ |+.+|+..++...++++|+...+.
T Consensus 218 ~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~i 290 (529)
T COG4147 218 HPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPII 290 (529)
T ss_pred CcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001112221 233444444444455665555543221 1222 567888999999999999986654
No 100
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=95.33 E-value=2.8 Score=41.45 Aligned_cols=121 Identities=15% Similarity=0.257 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccC-CCCCCCCC------HHHHHHHHHHHH
Q 016040 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTN-LDPFLPYG------TEGVFEAAAVVY 281 (396)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~ 281 (396)
..++.+++.+++.+..+.|.|..+|+..+.+..-.+.+.++.+-++-..+..+ ......+. ...+.-+...++
T Consensus 254 ~~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqif 333 (629)
T KOG3659|consen 254 LALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIF 333 (629)
T ss_pred HHHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHH
Confidence 34455556666778888999999998666655554444444444432211111 11111222 244666777778
Q ss_pred HHh-hchhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016040 282 WSY-TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMV 330 (396)
Q Consensus 282 ~~f-~G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~ 330 (396)
++. .|+.....++.-.|- +.|.-|-.+..-.+..+.+++..+....++
T Consensus 334 fslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfviFsvL 382 (629)
T KOG3659|consen 334 FSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFVIFSVL 382 (629)
T ss_pred hhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 877 488877777775554 345555555555666666666666554444
No 101
>PLN00149 potassium transporter; Provisional
Probab=95.04 E-value=5 Score=41.40 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCHHHH--------HHHHHHHH
Q 016040 210 DPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGV--------FEAAAVVY 281 (396)
Q Consensus 210 ~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 281 (396)
..+++++++.++.+.-+|....+++-.-...+=++.+..+.+..+.+.++.-+..++|.-...+ +..+..++
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g~~~LGgV~ 278 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGGWMSLGGIL 278 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCceeEeecchh
Confidence 4588888888888888887666655444333334444444455555555554444444211111 22455567
Q ss_pred HHhhchhHHhhhhhhhcCCCCChhHHHHHHHH-HHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHHHH
Q 016040 282 WSYTGFDMVATMAEETKKPSRDIPIGLVGSMC-MITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVC 360 (396)
Q Consensus 282 ~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 360 (396)
.+++|-|+.-.=-+.. .+|.+.+|-..-+. ...+-|+.- .+....-|...-+-.+|+.. ...+++.+-+.++
T Consensus 279 L~iTG~EALyADlGHF--~~~~Ir~aw~~~V~P~L~L~Y~GQ-aA~l~~~p~~~~~~~~pFy~----~iP~~~~~P~~vl 351 (779)
T PLN00149 279 LCITGSEAMFADLGHF--SQLSIKIAFTSLVYPSLILAYMGQ-AAYLSKHHVIESDYRIGFYV----SVPEKLRWPVLVI 351 (779)
T ss_pred hcccchhhhhhcccCC--CccceeeeehhhHHHHHHHHhhhH-HHHHhcCcchhccccCcHHH----hCCchhHHHHHHH
Confidence 8888998765433332 23556555443222 222233332 22222222211111234432 2334544444444
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 361 ALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 361 ~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
..++..-+..+.+.+.-.+..+.-+=|.+|+
T Consensus 352 AtlAaIIASQA~ISg~FSii~Qa~~Lg~fPr 382 (779)
T PLN00149 352 AILAAVVGSQAIITGTFSIIKQCSALGCFPK 382 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4333333333444445556666677788884
No 102
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.97 E-value=3.2 Score=38.80 Aligned_cols=99 Identities=18% Similarity=0.022 Sum_probs=63.9
Q ss_pred cchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccc-cchhhhHHHhchhH
Q 016040 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVELGDFV 156 (396)
Q Consensus 79 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~G-g~y~~~~~~~g~~~ 156 (396)
.+.+-++..-+.++.|.|-...|...+. -|+. +++..+++.++.-.+.=..+-+.| ..+.| +.-+.+++..||..
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~--~GwlPa~lWI~~G~if~GaVHD~~sl~~S-vR~~G~Si~~i~~~~lG~~~ 128 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQ--FGWLPALLWIVFGCIFAGAVHDYGSLMAS-VRHKGKSIGEIAGKYLGKRA 128 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHH--hcchHHHHHHHHccHHHHHHHHHHHHhhh-hcCCCccHHHHHHHHHHHHH
Confidence 4556777778888889999988877643 4554 555455555555444333333333 33344 67778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016040 157 AYIAAGNILLEAVVGAAGLARSWS 180 (396)
Q Consensus 157 g~~~g~~~~~~~~~~~a~~~~~~~ 180 (396)
+.+..+..++..+...+..+...+
T Consensus 129 ~~lf~~f~~~~lilV~avF~~v~a 152 (376)
T PF02554_consen 129 KKLFLIFIFFLLILVIAVFADVVA 152 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887777776666555544333
No 103
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.50 E-value=5.8 Score=39.66 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=59.0
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-ccc--------cCCCCCCCCCHHHHHHHHHHHHHHhh-chhH
Q 016040 220 CNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH-GKT--------TNLDPFLPYGTEGVFEAAAVVYWSYT-GFDM 289 (396)
Q Consensus 220 ~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~f~-G~e~ 289 (396)
+......|+|..+|+......+-.+.++++.+-++.. +.. .++..+. +..-+..++..++|++. |+..
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~--~~~vW~~A~~Q~ffsl~ig~G~ 268 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL--DPKVWIAALGQVFFSLSIGFGI 268 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT--SHHHHHHHHHHHHHHTTTTSSH
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh--HHHHHHHHHHHHhhccCCCcce
Confidence 3344457888888887766654444444444433321 110 0111221 23456778889999994 8888
Q ss_pred HhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 016040 290 VATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA 325 (396)
Q Consensus 290 ~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~ 325 (396)
...++.-.|+ ++|++|..........+..++..++
T Consensus 269 ~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~ 303 (523)
T PF00209_consen 269 MITYGSYNKF-KNNIFRDALIVAFINTLVSLLAGLV 303 (523)
T ss_dssp HHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTH
T ss_pred EEEEcCcCCC-CccccccceEEEcCchhhhHhHHHH
Confidence 8899988877 5678887776666666655554433
No 104
>PLN00150 potassium ion transporter family protein; Provisional
Probab=94.12 E-value=4.6 Score=41.57 Aligned_cols=172 Identities=12% Similarity=0.079 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCC---------CHHHHHHHHHH
Q 016040 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPY---------GTEGVFEAAAV 279 (396)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 279 (396)
...+++++++.++.+.-+|....+++-.-...+=++.+.++.+..+.+.++.-+..++|. +..+ +..+..
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LG~ 292 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQG-WESLGG 292 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCce-EEEecc
Confidence 456888888888888888876666554443333344444444444555545444444332 1111 123555
Q ss_pred HHHHhhchhHHhhhhhhhcCCCCChhHHHHHHH-HHHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHH
Q 016040 280 VYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM-CMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358 (396)
Q Consensus 280 ~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 358 (396)
++.+++|-|+.-.=-+.. .+|.+.++-..-+ -...+-|+.- .+....-| ++ -.+|+.. ...+++.+-+.
T Consensus 293 V~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~LlL~Y~GQ-aA~ll~~p-~~--~~npFf~----~iP~~~~~P~~ 362 (779)
T PLN00150 293 IVLCMTGTEAMFADLGHF--TVKSMQIAFTSLVYPCLLLTYLGQ-AAYLVKHM-ED--VNDPFYR----SLPKPIYWPIF 362 (779)
T ss_pred eeeeecchhhhhccccCC--CccceeeeehhhHHHHHHHHHcch-HHHHhcCc-cc--ccCcHHH----hCCchhHHHHH
Confidence 667888888765433322 2355555544222 2222223322 22222122 11 2345432 23345444444
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
++..++..-+..+.+.+.-.+..+.-+=|.+|+
T Consensus 363 vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPr 395 (779)
T PLN00150 363 VLATCSAMIASQAMISATFSIVKQAMALGCFPR 395 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 443333333333444444556666677788885
No 105
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=93.93 E-value=4.7 Score=39.87 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc---cccccCCCCCCC---------CCHHHHHHH
Q 016040 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLP---------YGTEGVFEA 276 (396)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~---~~~~~~~~~~~~---------~~~~~~~~~ 276 (396)
...+++++++.+..+.-+|....+++ +..+.++=.+.+.+.|+. +. ++-+..++| +++.++ ..
T Consensus 132 Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~~~~~-~~ 206 (534)
T PF02705_consen 132 VVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNGWIGF-FV 206 (534)
T ss_pred ehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcCCchh-hh
Confidence 45688888888888888887666665 444444433333333333 32 322222222 233322 24
Q ss_pred HHHHHHHhhchhHHhhhhhhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHH
Q 016040 277 AAVVYWSYTGFDMVATMAEETKK-PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKY 355 (396)
Q Consensus 277 ~~~~~~~f~G~e~~~~~~~E~k~-p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 355 (396)
+..++.+.+|-|+.-. ++-+ .+|.+.++-..-+.-+.++.=+..-+....-|.+ ..+|+.... ++|+.+
T Consensus 207 LG~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~---~~npFf~~~----P~~~~~ 276 (534)
T PF02705_consen 207 LGAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEA---VSNPFFLLI----PEWLLW 276 (534)
T ss_pred cchHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcch---hhhHHHHHh----HHHHHH
Confidence 5667788899998764 3332 2355555444322222222111122222222211 234554333 345555
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 356 LVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
-+.++..++..-+..+.+.+.--+..+.-+-|.+||
T Consensus 277 p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr 312 (534)
T PF02705_consen 277 PMVILATLATIIASQAVISGAFSLTRQAIQLGYFPR 312 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 444444444444444444555566777788899995
No 106
>PLN00148 potassium transporter; Provisional
Probab=92.42 E-value=15 Score=38.03 Aligned_cols=172 Identities=15% Similarity=0.093 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCC---------CHHHHHHHHHH
Q 016040 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPY---------GTEGVFEAAAV 279 (396)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 279 (396)
...+++++++.++.+.-+|....+++-.-...+=++.+..+.+..+.+.++.-+..++|. +..+ +..+..
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LGg 275 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WISLGG 275 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEeecc
Confidence 456888888888888888876666555444444444444555555555555544444442 1121 224555
Q ss_pred HHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHH-HHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHH
Q 016040 280 VYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC-MITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358 (396)
Q Consensus 280 ~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 358 (396)
++.+++|-|+.-.=-+.. .+|.+.++-..-+. ...+-|+.- .+...--| ++ -.+|+.. ...+++.+-+.
T Consensus 276 V~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~L~L~Y~GQ-aA~ll~~p-~~--~~npFf~----~iP~~~~~P~~ 345 (785)
T PLN00148 276 ILLSITGTEAMFADLGHF--TAASIRLAFATVIYPCLVVQYMGQ-AAFLSKNI-PS--IPNSFYD----SIPDPVFWPVF 345 (785)
T ss_pred hheeccchhhhhhhccCC--CccceEEeeeehHHHHHHHHHcch-HHHHhcCc-cc--ccCcHHH----hCCchhHHHHH
Confidence 677888998765433333 23555555443222 222233322 22222222 21 2345432 23344444444
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
++..++..-+..+.+.+.-.+..+.-+=|.+|+
T Consensus 346 vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPr 378 (785)
T PLN00148 346 VIATLAAIVGSQAVITATFSIVKQCHALGCFPR 378 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 443333333333344444556666677788884
No 107
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=91.64 E-value=16 Score=36.75 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCC---------CHHHHHHHHHH
Q 016040 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPY---------GTEGVFEAAAV 279 (396)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 279 (396)
...+++++++.+..+.-+|....+++-.-...+=++.+.++.+..+.+ ++.-+..++|. +..++ ..+..
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~-~P~Vl~AlnP~ya~~f~~~~~~~gf-~~LG~ 220 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIA-NPEVLHALNPMWAVHFFLEYKTVSF-FALGA 220 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhc-CHHHHhHhCHHHHHHHHHhCCCceE-EEecc
Confidence 456788888888888888876655544333333333333333333332 33323333332 11111 13445
Q ss_pred HHHHhhchhHHhhhhhhhcCCCCChhHHHHHHHH-HHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHH
Q 016040 280 VYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC-MITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358 (396)
Q Consensus 280 ~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 358 (396)
++.+.+|-|+.-.=-+ +-.+|.+.++-..-+. ...+-|+.-...+ ..-| + ...+|+... ..+|+.+-+.
T Consensus 221 V~L~vTGaEALYADmG--HFG~~~Ir~aW~~~v~P~L~LnY~GQgA~l-l~~p-~--~~~NpFf~~----~P~~~~~p~v 290 (622)
T PRK10745 221 VVLAITGVEALYADMG--HFGKFPIRLAWFTVVLPSLVLNYFGQGALL-LKNP-E--AIKNPFFLL----APDWALIPLL 290 (622)
T ss_pred eeeeccchHHHhhccC--CCCccceeeeehhhHHHHHHHHhcchHHHH-hcCc-h--hhcCcHHHh----CChhHHHHHH
Confidence 5677788887543222 2234556555443322 2223333322222 2112 1 124565433 3355555444
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
++..++..-+..+.+.+.=.+..+.-+=|.+||
T Consensus 291 iLATlAtIIASQAvISGaFSl~~QAi~Lg~~Pr 323 (622)
T PRK10745 291 ILATLATVIASQAVISGVFSLTRQAVRLGYLPP 323 (622)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCC
Confidence 444444333333444444556667778888985
No 108
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=89.49 E-value=7.9 Score=39.55 Aligned_cols=172 Identities=18% Similarity=0.137 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCC---------CHHHHHHHHHH
Q 016040 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPY---------GTEGVFEAAAV 279 (396)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 279 (396)
...+++++++.++.+.-+|....+++-.-...+=++.+.++.+..+.+.++.-+..++|. +..++ ..+..
T Consensus 168 Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~~-~~LG~ 246 (688)
T TIGR00794 168 VVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVGW-VSLGG 246 (688)
T ss_pred ehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCcee-eeccc
Confidence 456888888888888888876666555444433344444444444444444433333332 22222 24555
Q ss_pred HHHHhhchhHHhhhhhhhcCCCCChhHHHHHH-HHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHH
Q 016040 280 VYWSYTGFDMVATMAEETKKPSRDIPIGLVGS-MCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358 (396)
Q Consensus 280 ~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 358 (396)
++.+.+|-|+.-.=-+... +|.+.++-..- .....+-|+.-. +....-| +. -.+|+... .++|+.+-+.
T Consensus 247 V~L~iTGaEALyADmGHFg--~~~Ir~aw~~~V~P~L~LnY~GQg-A~ll~~p-~~--~~NpFf~~----~P~~~~~p~~ 316 (688)
T TIGR00794 247 VVLSITGVEAMFADLGHFG--KLPIQLAWFTFVYPSLILCYIGQA-AYLSKHP-EA--IKNPFFLS----IPDWALWPLF 316 (688)
T ss_pred hhheeccHhhhhcccCCCC--cccceeehHHHHHHHHHHHHcchH-HHHhcCc-ch--hcCcHHHh----CchHHHHHHH
Confidence 6778889887654333332 35555554422 222222233222 2222122 11 13565433 3455555444
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHhcCCCch
Q 016040 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (396)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~ 391 (396)
++..++..-+..+.+.+.=.+..+.-+=|.+|+
T Consensus 317 vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr 349 (688)
T TIGR00794 317 IIATLAAIIASQAVISGVFSITSQAVRLGCFPR 349 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 444444443444444445556677778888885
No 109
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=88.70 E-value=4.5 Score=40.35 Aligned_cols=284 Identities=12% Similarity=0.070 Sum_probs=134.0
Q ss_pred ccccchhHHHHHhhhccccch-hhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccccchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSG-IFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~g-i~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p-~~Gg~y~~~~~~~g 153 (396)
-|++.++-.-+--+++.++.+ ....|+...+. |.. .+.+....++.. ..+++.-+-..+. .-...|+|.+..|+
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~--G~~-~~~~~~~~l~~~-~~~~~~f~Pvf~~~~v~~~~eYl~~Rf~ 119 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAY--GIQ-YWFFEWNALLSV-LLLGWIFIPVFYRLGVTTMYEYLEKRFG 119 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHH--HHH-HHHHHHHHHHHH-HhhheEEEEEEEecCeeehhHHHHHHhc
Confidence 467777766665555555433 33344444332 222 111222122111 1222221211221 22368999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 016040 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (396)
Q Consensus 154 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 233 (396)
+....+....+.+..+...+...+.=+..++...+ ..- + ...-........+....|+|..-+
T Consensus 120 ~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg-~~~--~--------------l~~~~~~~ic~~YT~~GGlkaVi~ 182 (585)
T KOG2349|consen 120 GRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG-INL--Y--------------LIVVILGLICVFYTALGGLKAVIW 182 (585)
T ss_pred ccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc-cCc--e--------------eehHHHHHHHHHHHHhcCeeEEEE
Confidence 98767666667666666666665555555555443 100 0 011122223344555577888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-------------ccCCC-CCCC-----C-CHHHHHHH-HHHHHHHhhchhHHhh
Q 016040 234 LNWISSIVSSCVIVFVIIVGFVHGK-------------TTNLD-PFLP-----Y-GTEGVFEA-AAVVYWSYTGFDMVAT 292 (396)
Q Consensus 234 ~~~~~~~~~i~~~i~~~i~~~~~~~-------------~~~~~-~~~~-----~-~~~~~~~~-~~~~~~~f~G~e~~~~ 292 (396)
...+=+.+++..++.+++.+..... ..|.. .+.. + .|. ++.+ .....+.+.--....+
T Consensus 183 TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~-~~~Gg~~~~l~~~~vnQ~~VQ 261 (585)
T KOG2349|consen 183 TDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWS-LLFGGTIMWLSYYGVNQLIVQ 261 (585)
T ss_pred hhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchh-HhcCCcHHHHHHHhhhHHHHh
Confidence 7777777777777777766554211 11111 1211 1 244 3333 3333333332333333
Q ss_pred hhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhc---c-ccc-----cc-cCchHHHHHHHhcc--hHHHHHHHHH
Q 016040 293 MAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMV---K-YTE-----ID-MNAAYSIAFRQIGM--NWAKYLVSVC 360 (396)
Q Consensus 293 ~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~---~-~~~-----~~-~~~p~~~~~~~~~~--~~~~~~~~~~ 360 (396)
----.|+ .|...+++........+...+....-.... . =|. .. +|.-+........+ +.+.-++...
T Consensus 262 R~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~~pGl~GLfia~ 340 (585)
T KOG2349|consen 262 RYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGHLPGLRGLFIAV 340 (585)
T ss_pred HHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcCCCCCccchhHHH
Confidence 2222233 355666666655555544444333321111 1 111 11 22223333344433 4444555556
Q ss_pred HHHHHHHHHHHHhhchhHHHHH
Q 016040 361 ALKGMTTSLLVGSLGQARYTTQ 382 (396)
Q Consensus 361 ~~~~~~~~~~~~~~~~sR~l~~ 382 (396)
+..+.+++..+.+++.+-+.+.
T Consensus 341 vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 341 VFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH
Confidence 6666666666666666665543
No 110
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=87.54 E-value=31 Score=34.12 Aligned_cols=103 Identities=16% Similarity=-0.014 Sum_probs=65.4
Q ss_pred cchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHH
Q 016040 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (396)
Q Consensus 79 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 158 (396)
.+.+-++..=+.++.|.|-.+.|...+.. |-+...+..+++.+++-.+.=-+.-+.|.-.+.-+.-+.+++.+|+..+.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~-G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQY-GWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHh-cCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 34455666677788899999988877554 53444443566666665554444444443333336778888999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016040 159 IAAGNILLEAVVGAAGLARSWSSY 182 (396)
Q Consensus 159 ~~g~~~~~~~~~~~a~~~~~~~~~ 182 (396)
+.....++--+...+..+...+..
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887766666666655555554443
No 111
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=84.69 E-value=44 Score=33.13 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhccccccc--chhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016040 113 IVLSYLASGLSALLSAFCYT-EFAVEIPVAGG--SFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID 188 (396)
Q Consensus 113 ~~~~~il~~~~~~~~~~~~~-el~~~~p~~Gg--~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~ 188 (396)
..++++++.++.+.+++++. .+...+-+..| ...+.++.+|++.+.......++..++...+.....+..+.++-.
T Consensus 293 ~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 293 IAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 45567777777777888887 66666654433 455667899999887666677777777766666677776666654
No 112
>PRK15015 carbon starvation protein A; Provisional
Probab=76.94 E-value=87 Score=31.99 Aligned_cols=96 Identities=21% Similarity=0.086 Sum_probs=57.9
Q ss_pred HHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccc-cchhhhHHHhchhHHHHH
Q 016040 83 DLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVELGDFVAYIA 160 (396)
Q Consensus 83 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~G-g~y~~~~~~~g~~~g~~~ 160 (396)
-++.-=++++.|.|-.+.|..... -|.. ..+..+++.++.-.+ .=|.-+-....+.| +.-+.+++..|+..+.+.
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa~--~GwlP~~LWIl~G~vf~GaV-hD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAAQ--MGYLPGMIWLLAGVVLAGAV-QDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHHH--HcchHHHHHHHHcceeechh-hhhhheeeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 445556677788999988887654 4443 444244444443333 33333333334444 677888899999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016040 161 AGNILLEAVVGAAGLARSWSS 181 (396)
Q Consensus 161 g~~~~~~~~~~~a~~~~~~~~ 181 (396)
....++..+...+..+...+.
T Consensus 164 li~i~~iliiviAvfalvvv~ 184 (701)
T PRK15015 164 LVACFMIMVIILAVLAMIVVK 184 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777666666665555544443
No 113
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=73.11 E-value=95 Score=30.21 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=56.0
Q ss_pred hhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHH
Q 016040 145 FSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (396)
Q Consensus 145 y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (396)
-..+.+.+|+....+.+...+++...+......++++++...++ .. ...+..++.++...+.
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-is-----------------Y~~~v~i~~l~S~~lS 329 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-LS-----------------YRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-Cc-----------------HHHHHHHHHHHHHHHH
Confidence 34556899999999999999999999999999999999888754 11 1245566666677777
Q ss_pred hhhhhhHHHHHHH
Q 016040 225 MSGTRRSSWLNWI 237 (396)
Q Consensus 225 ~~g~k~~~~~~~~ 237 (396)
..|.+..-+...-
T Consensus 330 n~G~~~II~~s~P 342 (439)
T PRK15433 330 NLGLSQLIQISVP 342 (439)
T ss_pred HhHHHHHHHHHHH
Confidence 7777655554443
No 114
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=68.21 E-value=1.2e+02 Score=29.42 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=55.9
Q ss_pred chhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHH
Q 016040 144 SFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (396)
Q Consensus 144 ~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (396)
.-..+++.+|+....+.+....++...+......+.+++....++. .+| ..+..++.++...+
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k--------------isY---~~~v~i~~i~S~~i 325 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK--------------ISY---KVWVIIFTIFSFII 325 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------cCh---HHHHHHHHHHHHHH
Confidence 3445568999999999999999999999999999999999988761 111 24555566667777
Q ss_pred HhhhhhhHHHHHH
Q 016040 224 AMSGTRRSSWLNW 236 (396)
Q Consensus 224 ~~~g~k~~~~~~~ 236 (396)
...|....-++..
T Consensus 326 an~Gl~~Ii~~s~ 338 (427)
T PF05525_consen 326 ANLGLDQIIKISV 338 (427)
T ss_pred HHhCHHHHHHHHH
Confidence 7788765555443
No 115
>PTZ00206 amino acid transporter; Provisional
Probab=62.57 E-value=67 Score=31.62 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=40.2
Q ss_pred CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhc
Q 016040 338 NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARA 386 (396)
Q Consensus 338 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d 386 (396)
...+.++.+...++++.++..+..++..++++.+++...+..+...-++
T Consensus 120 ~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~ 168 (467)
T PTZ00206 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKG 168 (467)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4467788887778999999999999999999999988888877665543
No 116
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=62.25 E-value=1.2e+02 Score=31.19 Aligned_cols=46 Identities=9% Similarity=0.205 Sum_probs=30.6
Q ss_pred hHHHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016040 210 DPVAVLILL-VCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV 255 (396)
Q Consensus 210 ~~~~~~~~~-~~~~i~~~g~k~~~~~~~~~~~~~i~~~i~~~i~~~~ 255 (396)
..+++.+.+ ++.+..++|+|..+++..+...+-.+.++++.+-++.
T Consensus 216 L~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvT 262 (629)
T KOG3660|consen 216 LALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVT 262 (629)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHcc
Confidence 344444444 4555566899999999887777666666666655544
No 117
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=57.81 E-value=1.8e+02 Score=27.80 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=53.0
Q ss_pred hhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHH
Q 016040 145 FSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (396)
Q Consensus 145 y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (396)
-+.+++.+|+.-+.+.+....++-..+......+.+++.....+. .. ...+.++..+....+.
T Consensus 258 ~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k---~~--------------y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 258 SAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK---LS--------------YKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CC--------------HHHHHHHHHHHHHHHH
Confidence 356678999999999999999999999888888999998887541 11 1234444555555555
Q ss_pred hhhhhhHHHHHHH
Q 016040 225 MSGTRRSSWLNWI 237 (396)
Q Consensus 225 ~~g~k~~~~~~~~ 237 (396)
..|....-++...
T Consensus 321 ~~Gl~~Ii~~~~P 333 (378)
T TIGR00796 321 NLGLTQIISISIP 333 (378)
T ss_pred HhCHHHHHHHHHH
Confidence 5676665554433
No 118
>COG4146 Predicted symporter [General function prediction only]
Probab=52.52 E-value=2.1e+02 Score=27.14 Aligned_cols=227 Identities=12% Similarity=-0.013 Sum_probs=106.5
Q ss_pred cchhhhHHHhchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHH
Q 016040 143 GSFSFLRVELGDFVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCN 221 (396)
Q Consensus 143 g~y~~~~~~~g~~~g~~~g~~~~~~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (396)
..-++.++.|.+....+...++.+.|.. ..+...++.+..++..++ ..+. ++. .+....+.....+-+.-+.
T Consensus 104 TIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~-l~~v-~~I-----S~g~~i~~~viaiG~~g~~ 176 (571)
T COG4146 104 TIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFH-LGEV-LQI-----SHGAAIWLLVIAIGLAGIL 176 (571)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhc-hHhh-hCc-----CcchHHHHHHHHHHHHHHH
Confidence 4678889999999999999888888855 467777777778888776 2211 110 0111011111222233355
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHhhcccc------------ccCCC----CCCCCCHHHHHHHHHHHHH
Q 016040 222 GIAMSGTRRSSWLNWISSIVSSCVIVFV---IIVGFVHGK------------TTNLD----PFLPYGTEGVFEAAAVVYW 282 (396)
Q Consensus 222 ~i~~~g~k~~~~~~~~~~~~~i~~~i~~---~i~~~~~~~------------~~~~~----~~~~~~~~~~~~~~~~~~~ 282 (396)
+..+.|.|..+....+-.+..++.-+.+ .+..+..++ .+.+. +-.+.+|...+.++...-+
T Consensus 177 Yai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~lG~Gsfa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~vN~ 256 (571)
T COG4146 177 YAIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLVNT 256 (571)
T ss_pred HHHHcchhheeeccccchhhHhhhhHHHHHHHHHhhcCccHhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhhhe
Confidence 5556777776654443333332222222 222222211 11111 2223467777777765544
Q ss_pred Hhhc-hhHHhhhh---hhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHH
Q 016040 283 SYTG-FDMVATMA---EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358 (396)
Q Consensus 283 ~f~G-~e~~~~~~---~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 358 (396)
.|-. -+.+.+-. ...+.-+|-+-.+-+.-+....++-+.. +..+...++ -...|..+..+..+....++.-++.
T Consensus 257 FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPG-liafhlygd-L~~aDmaYP~LVn~VlPv~l~GFf~ 334 (571)
T COG4146 257 FYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPG-LIAFHLYGD-LPKADMAYPTLVNNVLPVPLVGFFG 334 (571)
T ss_pred eeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhH-HHHHHHhcc-CCccccccHHHHHhccchHHHHHHH
Confidence 4432 23343333 3333334433222222222222222222 222222222 1122333444555555555555555
Q ss_pred HHHHHHHHHHHHHHhhchhH
Q 016040 359 VCALKGMTTSLLVGSLGQAR 378 (396)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR 378 (396)
....-+.+++.+++++.++-
T Consensus 335 AvLFGAilStFN~fLNSa~T 354 (571)
T COG4146 335 AVLFGAILSTFNGFLNSAST 354 (571)
T ss_pred HHHHHHHHHHHHHHhhhhhH
Confidence 55555566666666655443
No 119
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=47.49 E-value=27 Score=29.77 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=24.7
Q ss_pred hhhhcCCC-CChhHHHHHHHHHHHHHHHHHHHH
Q 016040 294 AEETKKPS-RDIPIGLVGSMCMITAVYCLMALA 325 (396)
Q Consensus 294 ~~E~k~p~-r~~p~a~~~~~~~~~~~y~~~~~~ 325 (396)
.|-.+||| |+.||+++.+.+.+.+.-++..+.
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 46678998 889999999888877776655443
No 120
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=39.16 E-value=41 Score=27.63 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=23.2
Q ss_pred hhhcCCC-CChhHHHHHHHHHHHHHHHHHHHH
Q 016040 295 EETKKPS-RDIPIGLVGSMCMITAVYCLMALA 325 (396)
Q Consensus 295 ~E~k~p~-r~~p~a~~~~~~~~~~~y~~~~~~ 325 (396)
|-.+||| |..||+++.+.+...+..++..+.
T Consensus 195 EGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 195 EGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred ecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5568998 889999998887776666655444
No 121
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=33.97 E-value=4.9e+02 Score=25.92 Aligned_cols=97 Identities=14% Similarity=0.013 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhccCC
Q 016040 118 LASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLE------AVVGAAGLARSWSSYLASMIDSNN 191 (396)
Q Consensus 118 il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~g~~~~~~------~~~~~a~~~~~~~~~l~~~~~~~~ 191 (396)
.+..++....+.+|+..+.++.+..-......+......+++.-...... |--.....+...++.+.+.--
T Consensus 301 piI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~--- 377 (502)
T PF03806_consen 301 PIIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGL--- 377 (502)
T ss_pred HHHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCC---
Confidence 34445566689999999999998888888888887776665543322211 111233444445555554311
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 016040 192 SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (396)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 233 (396)
+ .....+.+++++.++|++=...++|
T Consensus 378 --------~--------~~~l~i~fill~a~iNLfi~S~SaK 403 (502)
T PF03806_consen 378 --------P--------GIPLIIGFILLTAFINLFIGSASAK 403 (502)
T ss_pred --------C--------cHHHHHHHHHHHHHHHHhhhcchhh
Confidence 0 2246667778888888864444443
No 122
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=33.83 E-value=2.9e+02 Score=23.29 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhchhHHhhhh--hhhcCCC-CChhHHHHHHHHHHHHH
Q 016040 273 VFEAAAVVYWSYTGFDMVATMA--EETKKPS-RDIPIGLVGSMCMITAV 318 (396)
Q Consensus 273 ~~~~~~~~~~~f~G~e~~~~~~--~E~k~p~-r~~p~a~~~~~~~~~~~ 318 (396)
++......+|+|.-.-..-.+. +..++|+ .++.|.+..+..+..+-
T Consensus 66 l~~l~~si~~~fry~Rlar~L~~~~~~~~P~k~~~~~~l~~Gl~~nl~G 114 (183)
T PF12263_consen 66 LVALFFSIFWSFRYTRLARRLRSPNPAKRPSKADVVRLLRIGLIINLVG 114 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3434444555554433333332 3333443 34556666655554433
No 123
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=31.71 E-value=28 Score=28.26 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=34.5
Q ss_pred hhhccccchhhhccHHhHhhccC----hHHHHHHHHHHHHHHHHHHHHhhhhhccc-c-cccchhhh
Q 016040 88 CFGSVVGSGIFVITGQEAKKHAG----PAIVLSYLASGLSALLSAFCYTEFAVEIP-V-AGGSFSFL 148 (396)
Q Consensus 88 ~~~~~ig~gi~~~~~~~~~~~~G----~~~~~~~il~~~~~~~~~~~~~el~~~~p-~-~Gg~y~~~ 148 (396)
++=..+|.+.|.....+... .. +++.+..-+..+..-+.+++|+-+++.+- . .|+...|-
T Consensus 70 GiP~~lG~~~f~~~y~l~~~-~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~ 135 (153)
T PF11947_consen 70 GIPTALGVAVFVVFYYLKSR-QIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWE 135 (153)
T ss_pred chHHHHHHHHHHHHHHHHhc-cccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHH
Confidence 33333455555555544433 22 23444444555556668899999998874 3 77766554
No 124
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=30.89 E-value=1.4e+02 Score=19.66 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhchhHHhhhhhhhcCC
Q 016040 275 EAAAVVYWSYTGFDMVATMAEETKKP 300 (396)
Q Consensus 275 ~~~~~~~~~f~G~e~~~~~~~E~k~p 300 (396)
..+-..+|+|.|...-.+..++.++.
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~ 28 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQG 28 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcC
Confidence 44566789999999888888877653
No 125
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=30.52 E-value=5.1e+02 Score=25.08 Aligned_cols=76 Identities=11% Similarity=0.181 Sum_probs=55.9
Q ss_pred chhhhHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHH
Q 016040 144 SFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (396)
Q Consensus 144 ~y~~~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (396)
.-.+.++.+|+.-..+.|....++...+........+++.+...+.. + -..+..++.+...++
T Consensus 265 L~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~--------------S---Y~~~v~if~i~sflv 327 (431)
T COG1114 265 LSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKL--------------S---YKTWVIIFTLISFLV 327 (431)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------c---HHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999887611 1 124555666666777
Q ss_pred HhhhhhhHHHHHH
Q 016040 224 AMSGTRRSSWLNW 236 (396)
Q Consensus 224 ~~~g~k~~~~~~~ 236 (396)
.-.|....-++..
T Consensus 328 an~GL~~Ii~isv 340 (431)
T COG1114 328 ANLGLEQIIKISV 340 (431)
T ss_pred HHhhHHHHHHHHH
Confidence 7777665555443
No 126
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=28.57 E-value=2.1e+02 Score=20.12 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=32.5
Q ss_pred hHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 016040 288 DMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTM 328 (396)
Q Consensus 288 e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~ 328 (396)
+.-..+-.|++.|=|.+++-+..+...++.+..++.+.-..
T Consensus 4 ~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~ 44 (75)
T PF11998_consen 4 EQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI 44 (75)
T ss_pred HHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455678999999999999999999888888877666444
No 127
>PHA03164 hypothetical protein; Provisional
Probab=22.26 E-value=1e+02 Score=21.43 Aligned_cols=31 Identities=3% Similarity=0.154 Sum_probs=22.0
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 016040 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALA 325 (396)
Q Consensus 295 ~E~k~p~r~~p~a~~~~~~~~~~~y~~~~~~ 325 (396)
.|.+|-+|+.-.-++.++.++.++++++.+-
T Consensus 49 nlwnnrRktftFlvLtgLaIamILfiifvly 79 (88)
T PHA03164 49 NLWNNRRKTFTFLVLTGLAIAMILFIIFVLY 79 (88)
T ss_pred HHHHhhhheeehHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777888877777765543
No 128
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=20.31 E-value=2.1e+02 Score=20.69 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=22.4
Q ss_pred CcccccccchhHHHHHhhhccccchhhhcc
Q 016040 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVIT 101 (396)
Q Consensus 72 ~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~ 101 (396)
+++.--.+++.|++.++.+..++.+.+...
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~ 39 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLL 39 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344456789999999999988877766544
Done!