Query 016040
Match_columns 396
No_of_seqs 189 out of 2188
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 3.2E-42 1.1E-46 334.2 28.7 309 73-396 4-317 (445)
2 3gia_A Uncharacterized protein 100.0 3.7E-42 1.3E-46 333.6 27.8 308 75-396 4-315 (444)
3 4djk_A Probable glutamate/gamm 100.0 1E-37 3.5E-42 307.8 26.9 310 71-396 5-332 (511)
4 2jln_A MHP1; hydantoin, transp 98.9 5.5E-07 1.9E-11 87.5 24.8 286 76-383 24-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.3 0.00025 8.6E-09 70.3 26.3 282 76-380 48-377 (593)
6 3dh4_A Sodium/glucose cotransp 98.2 0.00023 7.8E-09 69.6 22.0 282 76-380 19-348 (530)
7 2a65_A Leutaa, Na(+):neurotran 97.4 0.096 3.3E-06 50.5 25.8 112 210-322 169-293 (519)
8 4ain_A Glycine betaine transpo 95.5 1.7 6E-05 41.6 19.5 24 76-99 93-116 (539)
9 2wsw_A BCCT family betaine/car 94.8 2.9 9.9E-05 39.9 24.3 25 75-99 87-111 (509)
10 2wsw_A BCCT family betaine/car 11.2 9.6E+02 0.033 22.6 10.4 15 72-86 87-101 (509)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=3.2e-42 Score=334.21 Aligned_cols=309 Identities=20% Similarity=0.312 Sum_probs=267.9
Q ss_pred cccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHh
Q 016040 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (396)
Q Consensus 73 ~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~ 152 (396)
++.||++++++.+++.++.++|+|++..++.. .. +|+.++++|++++++.++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 34689999999999999999999999998874 34 67888999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
||.+|++.||.+++.+....+.++..+++++..+++ .. . ++....++++++++++.++|++|+|..+
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~-~~~~~~~~~~~~~~~~~~in~~g~~~~~ 148 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP-IL-----------K-DPWVLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCG-GG-----------G-SHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc-cc-----------c-ccHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 999999999999999999988888888888876554 11 0 1122457888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCC-CCCCCC---HHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHH
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL 308 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~ 308 (396)
+++.+++.++++.++++++.++...+++++. ++.+.+ +.+++.++...+|+|.|+|.+++++||+|||+|++||++
T Consensus 149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~ 228 (445)
T 3l1l_A 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHH
Confidence 9999999999999988888887766655543 333333 567888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 016040 309 VGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (396)
Q Consensus 309 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg 387 (396)
..+..+++++|++..++.....|.+++. .++|+.+++++.+++++..++.+..+++.+++.++.+++.+|++++|||||
T Consensus 229 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg 308 (445)
T 3l1l_A 229 IGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999988764 457999999988889999999999999999999999999999999999999
Q ss_pred CCchhhhcC
Q 016040 388 MIPPWFALA 396 (396)
Q Consensus 388 ~lP~~f~~~ 396 (396)
.+|++|+|+
T Consensus 309 ~lP~~~~~~ 317 (445)
T 3l1l_A 309 LFPPIFARV 317 (445)
T ss_dssp SSCGGGGCC
T ss_pred CCcHHHHhc
Confidence 999999985
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=3.7e-42 Score=333.60 Aligned_cols=308 Identities=21% Similarity=0.378 Sum_probs=274.8
Q ss_pred cccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhch
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g~ 154 (396)
.||++++++.++++++.++|+|++..++..... +|+..+++|++++++.++.+++++|+++++|++||.|+|+++.+|+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 588999999999999999999999999988766 8889999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 016040 155 F-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (396)
Q Consensus 155 ~-~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 233 (396)
. .+...+|.+|+.+....+.++..+++++..+++ ...+ +....++++++++++.++|++|+|..++
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLIN-APIN------------TFNIAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCC------------HHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCc------------hHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6 355568999999999999999999999998876 2211 1123467888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCC-CCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHHHHHH
Q 016040 234 LNWISSIVSSCVIVFVIIVGFVHGKTTNLDP-FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312 (396)
Q Consensus 234 ~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~~~~~ 312 (396)
++.++..++++.++++++.++...+++|+.+ +.+.++.+++.++...+|+|.|+|.+++++||+|||+|++||++..+.
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~ 229 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHH
Confidence 9999999999999999888888777777665 445567788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccc--CchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcCCCc
Q 016040 313 CMITAVYCLMALALTMMVKYTEIDM--NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP 390 (396)
Q Consensus 313 ~~~~~~y~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP 390 (396)
.++.++|++..++.....|.+++.+ +.|+.++++...++++..++.+..+++.+++.++.+++.+|++++|||||.+|
T Consensus 230 ~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP 309 (444)
T 3gia_A 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELP 309 (444)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9999999999999998888887643 46888888887778888899999999999999999999999999999999999
Q ss_pred hhhhcC
Q 016040 391 PWFALA 396 (396)
Q Consensus 391 ~~f~~~ 396 (396)
++|+|+
T Consensus 310 ~~f~~~ 315 (444)
T 3gia_A 310 EFFERK 315 (444)
T ss_dssp SSCCTT
T ss_pred HHHhCC
Confidence 999874
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1e-37 Score=307.77 Aligned_cols=310 Identities=18% Similarity=0.264 Sum_probs=236.4
Q ss_pred cCcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHH-HHHHHHHhhhhh--cccccccchhh
Q 016040 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAV--EIPVAGGSFSF 147 (396)
Q Consensus 71 ~~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~-~~~~~~~~el~~--~~p~~Gg~y~~ 147 (396)
++++++|+++++++++++++.++|. +..+. ... +|+..++.+++++++. ++.+++++|+++ ++| +||.|.|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig~--~~~~~--~~~-~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMAV--YEYPT--FAT-SGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCCG--GGHHH--HHT-TTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHhh--chhHH--HHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 4566899999999999999999863 33333 233 7888666666666665 569999999999 999 9999999
Q ss_pred hHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhh
Q 016040 148 LRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (396)
Q Consensus 148 ~~~~~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (396)
+++.+|+..|++.||.+|++++...+......+.++..++. .|+...+.+...+++++++++++++|++|
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~p~~~~~~~~~~~~~~~~~~~~~~in~~g 148 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----------WPALNEDPITKTIAALIILWALALTQFGG 148 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----------CGGGTSCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CcccccCcHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988888888888765532 02233344456678889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHhhcc---ccc----cCCCCCCCCC-HHHHHHHHHHHHHHhhchhHHhhhhhhhc
Q 016040 228 TRRSSWLNWISSIVSSCV-IVFVIIVGFVH---GKT----TNLDPFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (396)
Q Consensus 228 ~k~~~~~~~~~~~~~i~~-~i~~~i~~~~~---~~~----~~~~~~~~~~-~~~~~~~~~~~~~~f~G~e~~~~~~~E~k 298 (396)
.|..++++.+...++++. ++++++.++.. .++ .+..++.+.. ..+.+.++...+|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k 228 (511)
T 4djk_A 149 TKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMS 228 (511)
T ss_dssp SSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 999999999988876443 44444444432 111 1122222221 12334456778999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHH----HHhc--chHHHHHHHHHHHHHHHHHHHHH
Q 016040 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAF----RQIG--MNWAKYLVSVCALKGMTTSLLVG 372 (396)
Q Consensus 299 ~p~r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 372 (396)
||+|++||++..++.++.++|++..++.....|+++....++....+ +..+ .+++..++.+..+++.+++.+++
T Consensus 229 ~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
T 4djk_A 229 NPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASW 308 (511)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988876555443333 3445 57888899999999999999999
Q ss_pred hhchhHHHHHHHhcCCCchhhhcC
Q 016040 373 SLGQARYTTQIARAHMIPPWFALA 396 (396)
Q Consensus 373 ~~~~sR~l~~~a~dg~lP~~f~~~ 396 (396)
+++.+|++++|||||.+|++|+|+
T Consensus 309 ~~~~sR~l~a~ardg~lP~~~~~~ 332 (511)
T 4djk_A 309 IVGPSRGMYVTAQKNLLPAAFAKM 332 (511)
T ss_dssp TTHHHHHTCHHHHGGGCSSSCCCC
T ss_pred HHHHHHHHHHHccCCcccHHHHhc
Confidence 999999999999999999999885
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.89 E-value=5.5e-07 Score=87.55 Aligned_cols=286 Identities=12% Similarity=0.006 Sum_probs=158.9
Q ss_pred ccccchhHHHHHhhhccccchhhhccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhccccccc-chhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGG-SFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg-~y~~~~~~~g 153 (396)
+|+.++++.+.+=++..+..+.+..-..... +-+.. ++++.+++.++........+.++ |+.|- .....+..||
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G---~~~Gl~~~v~~R~~FG 99 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAA---IRWGINFTVAARMPFG 99 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHH---HHHCCCHHHHTTTTSC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHH---hhcCCChhhhhHhhcc
Confidence 5778999999988888777666644333322 12222 55555555555444444444444 44443 4456788999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 016040 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (396)
Q Consensus 154 ~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 233 (396)
++.+.+..+...+..+...+......+..+...+... + +.+ ...+..+++.++...+.+.|.|...+
T Consensus 100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~----~-----g~~----~~~v~~~i~~~l~~~~~~~G~~~i~~ 166 (501)
T 2jln_A 100 IRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLL----T-----GFT----NLPLWIVIFGAIQVVTTFYGITFIRW 166 (501)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----CCC----CHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-----Ccc----hHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999998888888888877777777777776654200 0 000 01244455666677778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc--cCCCCCCC-CCHHHHHHHHHHH-HHHhhchhHHhhhhhhhcCCCCC------
Q 016040 234 LNWISSIVSSCVIVFVIIVGFVHGKT--TNLDPFLP-YGTEGVFEAAAVV-YWSYTGFDMVATMAEETKKPSRD------ 303 (396)
Q Consensus 234 ~~~~~~~~~i~~~i~~~i~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~f~G~e~~~~~~~E~k~p~r~------ 303 (396)
++.+...+.++..+.+.+..+...+. .+.....+ ....+++.++..+ .+...+.-..+.++.+.|+++..
T Consensus 167 ~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~ 246 (501)
T 2jln_A 167 MNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQT 246 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchh
Confidence 99998888877776666655544332 11111111 1122344444332 22223445567888888886541
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHH-HHHHH-HHHHHHHHHHHHH-Hhhc
Q 016040 304 -----IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWA-KYLVS-VCALKGMTTSLLV-GSLG 375 (396)
Q Consensus 304 -----~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~~ 375 (396)
.-++...+..+...+..+........ ....+|...+.+...++.+ ..+.. +.++++.+++... ..+.
T Consensus 247 ~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys 321 (501)
T 2jln_A 247 KADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLS 321 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHH
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 22233333333332222222221111 1233566555543433333 45555 6666666666553 5666
Q ss_pred hhHHHHHH
Q 016040 376 QARYTTQI 383 (396)
Q Consensus 376 ~sR~l~~~ 383 (396)
.+--+..+
T Consensus 322 ~~~~l~~~ 329 (501)
T 2jln_A 322 PAYTLCST 329 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666665
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.34 E-value=0.00025 Score=70.30 Aligned_cols=282 Identities=14% Similarity=0.115 Sum_probs=144.9
Q ss_pred ccccchhHHHHHhhhccccchhh-hccHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIF-VITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~-~~~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g 153 (396)
.|+++++....-.+++.++...+ ..++.... .|.. .++.|. +.+.....++.+...-++. +.-..++|.++.||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~--~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS--IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH--TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH--cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHcc
Confidence 57888887766666666664444 34454433 4433 333232 2222233344444443433 33468999999999
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 154 DFVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 154 ~~~g~~~g~~~~~~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
+....+.+....+.+.. ..+......+..++..++ .+ + ...+.+...+...+....|.|...
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-i~--------------~--~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-IP--------------L--MYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-CC--------------H--HHHHHHHHHHHHHHHHTTC---CC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cc--------------H--HHHHHHHHHHHHHHHHhcchHHHH
Confidence 98887777665544443 344555555666666655 11 0 112223344446666778899888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc----------------cccCCCCCCCC---------CHHHHHHHHHHHHHHhhch
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVHG----------------KTTNLDPFLPY---------GTEGVFEAAAVVYWSYTGF 287 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~~----------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~f~G~ 287 (396)
+...+=.+++++..+++.+..+... .++.+..+.+. .+..++.+.......+.|.
T Consensus 187 ~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 266 (593)
T 2xq2_A 187 WTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGF 266 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcC
Confidence 8776666666655544443322210 01222111111 1221111121222334444
Q ss_pred h-HHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHHH---HHHHhh-cc--------------cccc-ccCchHHHHHHH
Q 016040 288 D-MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMA---LALTMM-VK--------------YTEI-DMNAAYSIAFRQ 347 (396)
Q Consensus 288 e-~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~~---~~~~~~-~~--------------~~~~-~~~~p~~~~~~~ 347 (396)
+ ...+..=+.||+ |+.+|+...+.....++.++.. +..... .. ..+. +++..+..+. +
T Consensus 267 ~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~ 344 (593)
T 2xq2_A 267 NQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-Q 344 (593)
T ss_dssp TCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-H
T ss_pred ChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-H
Confidence 3 344555567886 6788998887666444443222 111111 00 0112 2344555556 6
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 016040 348 IGMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380 (396)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 380 (396)
..++++..++...++.+.+++..+.+.+.+-++
T Consensus 345 ~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 345 FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888777766554
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.20 E-value=0.00023 Score=69.62 Aligned_cols=282 Identities=13% Similarity=0.116 Sum_probs=142.0
Q ss_pred ccccchhHHHHHhhhccccchhhhc-cHHhHhhccChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHhc
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFVI-TGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~-~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~g 153 (396)
.|++++|....-.+++.++...+.. ++.... .|.. .++.|. +.+.....++.+...-++. +.-..++|.++.||
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~--~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg 94 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS--IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 94 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH--TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcC
Confidence 5889999988877777776544443 444433 4443 333232 2222233344444443333 33469999999999
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040 154 DFVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (396)
Q Consensus 154 ~~~g~~~g~~~~~~~~~-~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 232 (396)
+....+.+....+.++. ..+......+..++..++ .+ + ...+.+..++...+....|.|...
T Consensus 95 ~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-i~--------------~--~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 95 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-IP--------------L--MYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CC--------------H--HHHHHHHHHHHHHTTC------CC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC--------------H--HHHHHHHHHHHHHHHHhcchHHHH
Confidence 99887777665554443 334444445555666554 11 1 112223333334555567888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc----------------ccccCCCCC----CC-----CCHHHHHHHHHHHHHHhhch
Q 016040 233 WLNWISSIVSSCVIVFVIIVGFVH----------------GKTTNLDPF----LP-----YGTEGVFEAAAVVYWSYTGF 287 (396)
Q Consensus 233 ~~~~~~~~~~i~~~i~~~i~~~~~----------------~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~f~G~ 287 (396)
+...+-.++.++..+++.+..+.. ..++.+..+ .+ .++...+.+.......+.|.
T Consensus 158 ~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~ 237 (530)
T 3dh4_A 158 WTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGF 237 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcC
Confidence 877776666665544444332221 011111111 01 11221111211122233343
Q ss_pred h-HHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHH---HHHHHhhcc----------------ccccccCchHHHHHHH
Q 016040 288 D-MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLM---ALALTMMVK----------------YTEIDMNAAYSIAFRQ 347 (396)
Q Consensus 288 e-~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~---~~~~~~~~~----------------~~~~~~~~p~~~~~~~ 347 (396)
+ ...+-.=..||+ |+.+|+...+.....++.++. .++.....+ ++..+++..+..+.+
T Consensus 238 ~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~- 315 (530)
T 3dh4_A 238 NQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ- 315 (530)
T ss_dssp TCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-
T ss_pred CHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-
Confidence 2 233333445776 568888887765543332221 111111111 111234556666665
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 016040 348 IGMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380 (396)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 380 (396)
..++++..++...++.+.+++..+.+++.+-.+
T Consensus 316 ~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 316 FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 667888888888888888888888777776654
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.43 E-value=0.096 Score=50.50 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHhhccccc-----cC----CC-CCCCC-CHHHHHHHH
Q 016040 210 DPVAVLILLVCNGIAMSGT-RRSSWLNWISSIVSSCVIVFVIIVGFVHGKT-----TN----LD-PFLPY-GTEGVFEAA 277 (396)
Q Consensus 210 ~~~~~~~~~~~~~i~~~g~-k~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~-----~~----~~-~~~~~-~~~~~~~~~ 277 (396)
.+..+++.+++.++..+|+ |-..|+..++...-.+.++++.+-++...++ +. +. ++..- +...+..++
T Consensus 169 ~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~ 248 (519)
T 2a65_A 169 YIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAV 248 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHH
Confidence 3444555666777778899 6789999988887777777766655543321 00 01 11111 235578889
Q ss_pred HHHHHHhh-chhHHhhhhhhhcCCCCChhHHHHHHHHHHHHHHHHH
Q 016040 278 AVVYWSYT-GFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLM 322 (396)
Q Consensus 278 ~~~~~~f~-G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~~~~y~~~ 322 (396)
..++|++. |+.....++.-.|+ +.|++|.............++.
T Consensus 249 gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~slla 293 (519)
T 2a65_A 249 GQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVIL 293 (519)
T ss_dssp HHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHHH
Confidence 99999995 89999999988876 5678887777666655554443
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=95.46 E-value=1.7 Score=41.61 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=20.7
Q ss_pred ccccchhHHHHHhhhccccchhhh
Q 016040 76 QKCLTWWDLTWLCFGSVVGSGIFV 99 (396)
Q Consensus 76 ~r~l~~~~~~~~~~~~~ig~gi~~ 99 (396)
|.+++.++.++|.+++-+|.|+++
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCcchHHHHHHHHHhhcchhee
Confidence 677999999999999988888763
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=94.81 E-value=2.9 Score=39.87 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=20.7
Q ss_pred cccccchhHHHHHhhhccccchhhh
Q 016040 75 LQKCLTWWDLTWLCFGSVVGSGIFV 99 (396)
Q Consensus 75 ~~r~l~~~~~~~~~~~~~ig~gi~~ 99 (396)
-|.+++.++.++|.+++-+|.|+++
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhh
Confidence 3567999999999999888888655
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=11.21 E-value=9.6e+02 Score=22.65 Aligned_cols=15 Identities=13% Similarity=0.412 Sum_probs=9.9
Q ss_pred CcccccccchhHHHH
Q 016040 72 KQPLQKCLTWWDLTW 86 (396)
Q Consensus 72 ~~~~~r~l~~~~~~~ 86 (396)
+++.-+.++|....+
T Consensus 87 ~kPefs~~sW~aMlF 101 (509)
T 2wsw_A 87 EKPEFSTASWIFMMF 101 (509)
T ss_dssp SCCSSCHHHHHHHHH
T ss_pred CCCCCccchHHHHHH
Confidence 444477788887754
Done!