Query 016042
Match_columns 396
No_of_seqs 324 out of 1657
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 70.5 2.1 7.1E-05 30.0 1.9 29 160-188 17-45 (56)
2 3j21_g 50S ribosomal protein L 60.9 3.9 0.00013 28.1 1.8 29 160-188 12-40 (51)
3 2dkt_A Ring finger and CHY zin 44.3 8.3 0.00028 32.3 1.5 45 156-200 77-125 (143)
4 1joc_A EEA1, early endosomal a 40.3 11 0.00038 30.7 1.7 25 162-186 69-95 (125)
5 1x4u_A Zinc finger, FYVE domai 39.5 13 0.00044 28.0 1.8 23 163-185 15-39 (84)
6 1dvp_A HRS, hepatocyte growth 39.4 11 0.00038 33.6 1.7 24 163-186 162-187 (220)
7 1z2q_A LM5-1; membrane protein 37.4 14 0.00049 27.7 1.8 25 162-186 21-47 (84)
8 1vfy_A Phosphatidylinositol-3- 34.1 11 0.00037 27.6 0.6 24 163-186 12-37 (73)
9 3zyq_A Hepatocyte growth facto 34.0 14 0.00049 33.2 1.5 24 163-186 165-190 (226)
10 1wfk_A Zinc finger, FYVE domai 32.8 15 0.00051 28.0 1.2 25 162-186 9-35 (88)
11 1y02_A CARP2, FYVE-ring finger 31.5 14 0.00047 30.0 0.8 23 163-185 20-44 (120)
12 2yw8_A RUN and FYVE domain-con 30.2 14 0.00047 27.7 0.6 24 163-186 20-45 (82)
13 3t7l_A Zinc finger FYVE domain 29.6 22 0.00076 27.0 1.7 25 162-186 20-46 (90)
14 2dkt_A Ring finger and CHY zin 26.3 13 0.00046 31.1 -0.1 36 159-194 98-136 (143)
15 3u5e_m 60S ribosomal protein L 22.9 30 0.001 27.9 1.4 25 161-185 92-118 (128)
16 3gj3_B Nuclear pore complex pr 20.6 41 0.0014 20.7 1.3 21 163-183 8-28 (33)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=70.52 E-value=2.1 Score=29.97 Aligned_cols=29 Identities=28% Similarity=0.705 Sum_probs=24.4
Q ss_pred cccccccccCCCCCCCCccccccCccccc
Q 016042 160 YTEKECSTCKIPKPARSKHCSICNRCVAR 188 (396)
Q Consensus 160 ~~~~~C~tC~~~kP~RSkHC~~C~rCV~r 188 (396)
...+.|..|...-|+|+..|+.||..-+|
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hchhhhccccCcCCcccccccCCCCCCCC
Confidence 34689999999999999999999865444
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.85 E-value=3.9 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=24.5
Q ss_pred cccccccccCCCCCCCCccccccCccccc
Q 016042 160 YTEKECSTCKIPKPARSKHCSICNRCVAR 188 (396)
Q Consensus 160 ~~~~~C~tC~~~kP~RSkHC~~C~rCV~r 188 (396)
.....|+.|...-|+++..|+.||.--+|
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 35689999999999999999999875444
No 3
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=44.31 E-value=8.3 Score=32.33 Aligned_cols=45 Identities=27% Similarity=0.554 Sum_probs=28.3
Q ss_pred CccccccccccccCCCCCCCC-ccccccCccccc---cccccccccccc
Q 016042 156 DNIIYTEKECSTCKIPKPARS-KHCSICNRCVAR---FDHHCGWMNNCI 200 (396)
Q Consensus 156 d~~~~~~~~C~tC~~~kP~RS-kHC~~C~rCV~r---fDHHC~WinnCV 200 (396)
-+..+...+|..|+++.+.+. .||..||-|-.. -=-||.=-|-|+
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~ 125 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCL 125 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeee
Confidence 344566778999998866543 677777777654 113555555554
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.33 E-value=11 Score=30.67 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=17.9
Q ss_pred cccccccCCC--CCCCCccccccCccc
Q 016042 162 EKECSTCKIP--KPARSKHCSICNRCV 186 (396)
Q Consensus 162 ~~~C~tC~~~--kP~RSkHC~~C~rCV 186 (396)
...|..|... --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3578888753 345889999999743
No 5
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.54 E-value=13 Score=27.97 Aligned_cols=23 Identities=22% Similarity=0.673 Sum_probs=16.9
Q ss_pred ccccccCCC--CCCCCccccccCcc
Q 016042 163 KECSTCKIP--KPARSKHCSICNRC 185 (396)
Q Consensus 163 ~~C~tC~~~--kP~RSkHC~~C~rC 185 (396)
..|..|+.. --.|-|||+.||+-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcE
Confidence 578888742 34588999999874
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.42 E-value=11 Score=33.59 Aligned_cols=24 Identities=25% Similarity=0.814 Sum_probs=17.5
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016042 163 KECSTCKIP--KPARSKHCSICNRCV 186 (396)
Q Consensus 163 ~~C~tC~~~--kP~RSkHC~~C~rCV 186 (396)
..|..|+.. --.|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 688888742 235889999998754
No 7
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.36 E-value=14 Score=27.72 Aligned_cols=25 Identities=24% Similarity=0.667 Sum_probs=17.9
Q ss_pred cccccccCCC--CCCCCccccccCccc
Q 016042 162 EKECSTCKIP--KPARSKHCSICNRCV 186 (396)
Q Consensus 162 ~~~C~tC~~~--kP~RSkHC~~C~rCV 186 (396)
...|..|+.. --.|-|||+.||+-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 3578888753 235889999998744
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.11 E-value=11 Score=27.58 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=17.4
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016042 163 KECSTCKIP--KPARSKHCSICNRCV 186 (396)
Q Consensus 163 ~~C~tC~~~--kP~RSkHC~~C~rCV 186 (396)
..|..|... --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 468888743 235889999999844
No 9
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.02 E-value=14 Score=33.16 Aligned_cols=24 Identities=29% Similarity=0.886 Sum_probs=16.7
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016042 163 KECSTCKIP--KPARSKHCSICNRCV 186 (396)
Q Consensus 163 ~~C~tC~~~--kP~RSkHC~~C~rCV 186 (396)
..|..|... ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 578888732 223779999998754
No 10
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=32.80 E-value=15 Score=27.96 Aligned_cols=25 Identities=24% Similarity=0.604 Sum_probs=17.7
Q ss_pred cccccccCCC--CCCCCccccccCccc
Q 016042 162 EKECSTCKIP--KPARSKHCSICNRCV 186 (396)
Q Consensus 162 ~~~C~tC~~~--kP~RSkHC~~C~rCV 186 (396)
...|..|+.. --.|-|||+.||+-+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE
Confidence 3578888752 335889999999843
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=31.47 E-value=14 Score=30.05 Aligned_cols=23 Identities=26% Similarity=0.735 Sum_probs=17.2
Q ss_pred ccccccCC--CCCCCCccccccCcc
Q 016042 163 KECSTCKI--PKPARSKHCSICNRC 185 (396)
Q Consensus 163 ~~C~tC~~--~kP~RSkHC~~C~rC 185 (396)
..|..|.. .--.|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 57888874 234588999999984
No 12
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=30.17 E-value=14 Score=27.68 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=17.4
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016042 163 KECSTCKIP--KPARSKHCSICNRCV 186 (396)
Q Consensus 163 ~~C~tC~~~--kP~RSkHC~~C~rCV 186 (396)
..|..|... --.|-|||+.||+-+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEE
Confidence 578888742 235889999999854
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.61 E-value=22 Score=27.03 Aligned_cols=25 Identities=24% Similarity=0.788 Sum_probs=17.4
Q ss_pred cccccccCCC--CCCCCccccccCccc
Q 016042 162 EKECSTCKIP--KPARSKHCSICNRCV 186 (396)
Q Consensus 162 ~~~C~tC~~~--kP~RSkHC~~C~rCV 186 (396)
...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 3578888742 234789999998744
No 14
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=26.31 E-value=13 Score=31.06 Aligned_cols=36 Identities=31% Similarity=0.694 Sum_probs=26.8
Q ss_pred ccccccccccCCCCCCCCccccccCccccc--cc-cccc
Q 016042 159 IYTEKECSTCKIPKPARSKHCSICNRCVAR--FD-HHCG 194 (396)
Q Consensus 159 ~~~~~~C~tC~~~kP~RSkHC~~C~rCV~r--fD-HHC~ 194 (396)
+|+=..|..|++=+..--.||..||.|+.. .| |.|+
T Consensus 98 ~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 98 QYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp EEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred eecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 344467777777777778999999999653 45 7775
No 15
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=22.88 E-value=30 Score=27.89 Aligned_cols=25 Identities=24% Similarity=0.701 Sum_probs=21.5
Q ss_pred ccccccccCCCCCCCCccccc--cCcc
Q 016042 161 TEKECSTCKIPKPARSKHCSI--CNRC 185 (396)
Q Consensus 161 ~~~~C~tC~~~kP~RSkHC~~--C~rC 185 (396)
....|..|...-|+|++.|+. ||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 357999999999999999994 8764
No 16
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=20.63 E-value=41 Score=20.73 Aligned_cols=21 Identities=24% Similarity=0.778 Sum_probs=16.2
Q ss_pred ccccccCCCCCCCCccccccC
Q 016042 163 KECSTCKIPKPARSKHCSICN 183 (396)
Q Consensus 163 ~~C~tC~~~kP~RSkHC~~C~ 183 (396)
=.|.+|.+.-++.+.+|..|.
T Consensus 8 W~C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 8 WDCDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp EECTTTCCEECTTCSBCTTTC
T ss_pred eeCCcccCCCccccCEEcccC
Confidence 358888888888888887775
Done!