Query 016043
Match_columns 396
No_of_seqs 330 out of 2037
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:16:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1684 Enoyl-CoA hydratase [L 100.0 6E-95 1.3E-99 688.6 28.9 358 7-367 33-395 (401)
2 PLN02851 3-hydroxyisobutyryl-C 100.0 1.3E-84 2.9E-89 650.1 38.5 362 9-373 39-406 (407)
3 PLN02988 3-hydroxyisobutyryl-C 100.0 2.5E-84 5.5E-89 646.2 38.1 369 8-376 5-380 (381)
4 PLN02157 3-hydroxyisobutyryl-C 100.0 2.3E-81 5E-86 627.0 37.5 361 11-371 36-399 (401)
5 PLN02874 3-hydroxyisobutyryl-C 100.0 1.9E-77 4.1E-82 598.7 36.1 375 1-379 1-378 (379)
6 PRK05617 3-hydroxyisobutyryl-C 100.0 6.3E-69 1.4E-73 531.1 30.0 336 12-356 3-342 (342)
7 PRK05862 enoyl-CoA hydratase; 100.0 1.6E-55 3.5E-60 420.2 28.2 253 11-339 3-256 (257)
8 PRK06142 enoyl-CoA hydratase; 100.0 1.7E-55 3.7E-60 423.4 27.9 259 9-339 3-272 (272)
9 PRK05809 3-hydroxybutyryl-CoA 100.0 2E-55 4.3E-60 420.3 27.8 256 10-339 2-259 (260)
10 PRK05980 enoyl-CoA hydratase; 100.0 2.6E-55 5.6E-60 419.5 28.1 254 12-337 3-260 (260)
11 PRK09076 enoyl-CoA hydratase; 100.0 4E-55 8.6E-60 417.7 28.3 252 13-339 4-257 (258)
12 PRK06127 enoyl-CoA hydratase; 100.0 4.9E-55 1.1E-59 419.5 28.6 257 11-339 10-268 (269)
13 PRK07799 enoyl-CoA hydratase; 100.0 6.3E-55 1.4E-59 417.5 28.5 256 11-339 4-262 (263)
14 PRK09674 enoyl-CoA hydratase-i 100.0 5.7E-55 1.2E-59 416.0 28.1 252 12-339 2-254 (255)
15 PRK08150 enoyl-CoA hydratase; 100.0 5.9E-55 1.3E-59 415.8 28.2 253 12-340 2-255 (255)
16 PRK07658 enoyl-CoA hydratase; 100.0 6E-55 1.3E-59 416.3 28.0 253 13-339 3-256 (257)
17 PRK08139 enoyl-CoA hydratase; 100.0 8.4E-55 1.8E-59 417.2 28.9 257 9-339 8-265 (266)
18 PRK07657 enoyl-CoA hydratase; 100.0 1.1E-54 2.3E-59 415.2 27.9 254 12-339 3-259 (260)
19 TIGR02280 PaaB1 phenylacetate 100.0 1.2E-54 2.5E-59 414.1 27.7 253 14-339 1-255 (256)
20 PLN02664 enoyl-CoA hydratase/d 100.0 9.1E-55 2E-59 418.9 27.2 254 14-339 10-274 (275)
21 PRK06563 enoyl-CoA hydratase; 100.0 8.4E-55 1.8E-59 414.8 26.7 252 14-339 1-254 (255)
22 PRK08138 enoyl-CoA hydratase; 100.0 2E-54 4.3E-59 413.6 29.0 255 9-339 4-260 (261)
23 PRK08252 enoyl-CoA hydratase; 100.0 2E-54 4.4E-59 412.0 28.1 250 12-339 3-253 (254)
24 PLN02600 enoyl-CoA hydratase 100.0 1.4E-54 3E-59 412.3 26.7 247 19-339 2-250 (251)
25 PRK06494 enoyl-CoA hydratase; 100.0 1.7E-54 3.6E-59 413.7 27.4 253 10-339 2-258 (259)
26 PRK09245 enoyl-CoA hydratase; 100.0 2.3E-54 5.1E-59 414.2 28.2 256 12-339 3-265 (266)
27 PRK08258 enoyl-CoA hydratase; 100.0 3.5E-54 7.6E-59 415.3 29.4 256 12-339 17-276 (277)
28 PRK08140 enoyl-CoA hydratase; 100.0 3.1E-54 6.8E-59 412.5 28.7 256 11-339 3-261 (262)
29 PRK05981 enoyl-CoA hydratase; 100.0 3.8E-54 8.2E-59 412.8 28.7 258 10-339 2-265 (266)
30 PRK05995 enoyl-CoA hydratase; 100.0 3.9E-54 8.5E-59 411.8 27.9 258 10-340 2-262 (262)
31 PRK07511 enoyl-CoA hydratase; 100.0 4.5E-54 9.8E-59 410.9 28.3 255 12-338 3-259 (260)
32 PRK07659 enoyl-CoA hydratase; 100.0 4.5E-54 9.7E-59 410.9 27.3 256 9-339 3-259 (260)
33 COG1024 CaiD Enoyl-CoA hydrata 100.0 8.1E-54 1.8E-58 408.5 28.2 253 10-337 3-257 (257)
34 PRK09120 p-hydroxycinnamoyl Co 100.0 8.8E-54 1.9E-58 411.9 28.5 257 9-335 5-267 (275)
35 PRK07468 enoyl-CoA hydratase; 100.0 6.3E-54 1.4E-58 410.4 27.3 256 11-339 3-261 (262)
36 PRK06495 enoyl-CoA hydratase; 100.0 1.1E-53 2.4E-58 407.5 28.0 254 10-339 2-256 (257)
37 PRK05674 gamma-carboxygeranoyl 100.0 8E-54 1.7E-58 410.2 27.1 257 10-339 3-263 (265)
38 PRK06688 enoyl-CoA hydratase; 100.0 1.3E-53 2.8E-58 407.5 28.1 254 11-339 4-258 (259)
39 PRK07327 enoyl-CoA hydratase; 100.0 2E-53 4.3E-58 408.2 27.5 256 8-339 7-267 (268)
40 PRK05864 enoyl-CoA hydratase; 100.0 1.9E-53 4.1E-58 409.9 27.1 260 9-340 6-275 (276)
41 PRK06210 enoyl-CoA hydratase; 100.0 1.6E-53 3.5E-58 409.7 26.3 259 9-339 2-271 (272)
42 TIGR01929 menB naphthoate synt 100.0 1.8E-53 3.9E-58 406.6 26.0 254 12-339 2-258 (259)
43 TIGR03210 badI 2-ketocyclohexa 100.0 2.4E-53 5.2E-58 405.0 26.5 251 12-339 2-255 (256)
44 PRK03580 carnitinyl-CoA dehydr 100.0 4E-53 8.7E-58 404.6 27.4 251 13-339 4-260 (261)
45 PRK06072 enoyl-CoA hydratase; 100.0 5.3E-53 1.2E-57 400.8 27.7 246 14-339 2-247 (248)
46 PRK06144 enoyl-CoA hydratase; 100.0 5.1E-53 1.1E-57 404.0 27.5 255 8-339 4-261 (262)
47 KOG1680 Enoyl-CoA hydratase [L 100.0 8.8E-54 1.9E-58 396.3 21.3 250 14-339 39-289 (290)
48 PRK06143 enoyl-CoA hydratase; 100.0 5.9E-53 1.3E-57 402.2 26.8 249 9-331 3-254 (256)
49 PRK07260 enoyl-CoA hydratase; 100.0 7E-53 1.5E-57 401.6 27.3 249 12-331 2-253 (255)
50 PRK07509 enoyl-CoA hydratase; 100.0 1.1E-52 2.5E-57 401.7 28.1 254 11-338 2-261 (262)
51 PRK07827 enoyl-CoA hydratase; 100.0 1.8E-52 3.8E-57 399.9 28.7 255 10-338 4-259 (260)
52 PRK08260 enoyl-CoA hydratase; 100.0 1.1E-52 2.4E-57 408.4 27.5 257 11-340 3-278 (296)
53 PRK11423 methylmalonyl-CoA dec 100.0 1.6E-52 3.5E-57 400.4 27.1 254 10-339 2-260 (261)
54 PRK07396 dihydroxynaphthoic ac 100.0 1.8E-52 4E-57 402.4 27.6 256 10-339 11-268 (273)
55 PLN02888 enoyl-CoA hydratase 100.0 3.3E-52 7.2E-57 398.9 28.0 255 8-339 5-263 (265)
56 TIGR03189 dienoyl_CoA_hyt cycl 100.0 2.8E-52 6.1E-57 396.4 27.1 246 14-339 3-250 (251)
57 PRK05870 enoyl-CoA hydratase; 100.0 1.8E-52 3.9E-57 397.5 24.7 243 12-328 3-247 (249)
58 PRK08259 enoyl-CoA hydratase; 100.0 3.8E-52 8.2E-57 396.3 26.1 248 12-335 3-251 (254)
59 PRK06023 enoyl-CoA hydratase; 100.0 6.3E-52 1.4E-56 394.2 26.5 243 12-328 3-249 (251)
60 PRK12478 enoyl-CoA hydratase; 100.0 4.2E-52 9.1E-57 404.2 25.7 257 9-341 2-282 (298)
61 PRK07854 enoyl-CoA hydratase; 100.0 1E-51 2.2E-56 390.8 27.3 240 14-339 2-242 (243)
62 PLN02921 naphthoate synthase 100.0 2.2E-51 4.8E-56 402.8 28.2 255 10-339 63-322 (327)
63 PRK07938 enoyl-CoA hydratase; 100.0 1.5E-51 3.2E-56 391.1 24.8 242 17-335 7-249 (249)
64 PRK07112 polyketide biosynthes 100.0 5.7E-51 1.2E-55 388.4 27.2 252 10-339 2-254 (255)
65 PF00378 ECH: Enoyl-CoA hydrat 100.0 2.4E-51 5.2E-56 388.7 24.2 244 15-331 1-245 (245)
66 PLN03214 probable enoyl-CoA hy 100.0 7.4E-51 1.6E-55 392.0 26.8 252 8-331 7-263 (278)
67 PRK08321 naphthoate synthase; 100.0 1.2E-50 2.7E-55 394.8 26.9 256 11-339 22-297 (302)
68 PRK07110 polyketide biosynthes 100.0 1.8E-50 3.8E-55 383.8 26.8 245 9-328 2-247 (249)
69 PRK06190 enoyl-CoA hydratase; 100.0 4.1E-50 8.8E-55 382.9 27.4 252 10-333 2-254 (258)
70 TIGR03222 benzo_boxC benzoyl-C 100.0 1.7E-48 3.7E-53 402.9 24.7 253 14-340 260-544 (546)
71 PRK08184 benzoyl-CoA-dihydrodi 100.0 5.1E-48 1.1E-52 400.6 23.7 253 15-341 265-549 (550)
72 PRK05869 enoyl-CoA hydratase; 100.0 3.1E-47 6.7E-52 355.5 21.4 212 12-293 3-220 (222)
73 PRK08290 enoyl-CoA hydratase; 100.0 5.5E-47 1.2E-51 366.8 23.4 234 10-312 2-257 (288)
74 PRK11730 fadB multifunctional 100.0 3.2E-46 6.8E-51 400.7 27.2 280 13-331 7-297 (715)
75 PRK08272 enoyl-CoA hydratase; 100.0 1.1E-45 2.5E-50 360.2 25.7 218 7-294 5-246 (302)
76 PRK08788 enoyl-CoA hydratase; 100.0 1.2E-44 2.6E-49 349.2 26.0 244 14-328 19-274 (287)
77 PRK11154 fadJ multifunctional 100.0 1.5E-44 3.2E-49 387.7 28.3 282 12-331 5-294 (708)
78 PRK06213 enoyl-CoA hydratase; 100.0 5.1E-45 1.1E-49 342.3 21.7 224 12-308 3-228 (229)
79 TIGR03200 dearomat_oah 6-oxocy 100.0 2.2E-44 4.8E-49 351.4 25.7 283 22-331 38-328 (360)
80 KOG1679 Enoyl-CoA hydratase [L 100.0 7E-45 1.5E-49 324.1 16.0 260 10-339 25-290 (291)
81 TIGR02440 FadJ fatty oxidation 100.0 6.9E-44 1.5E-48 381.8 26.0 277 17-331 6-289 (699)
82 TIGR02437 FadB fatty oxidation 100.0 1.1E-42 2.3E-47 372.9 29.4 284 13-331 7-297 (714)
83 KOG1681 Enoyl-CoA isomerase [L 100.0 2.4E-42 5.3E-47 310.5 17.2 261 8-338 15-290 (292)
84 TIGR02441 fa_ox_alpha_mit fatt 100.0 3.1E-41 6.7E-46 362.4 28.4 303 8-331 9-321 (737)
85 PLN02267 enoyl-CoA hydratase/i 100.0 9E-42 1.9E-46 322.1 21.3 183 14-198 2-190 (239)
86 COG0447 MenB Dihydroxynaphthoi 100.0 1.3E-41 2.8E-46 303.7 13.5 254 9-339 15-277 (282)
87 cd06558 crotonase-like Crotona 100.0 4.4E-40 9.5E-45 300.4 19.3 190 14-203 1-191 (195)
88 KOG0016 Enoyl-CoA hydratase/is 100.0 1.8E-39 3.9E-44 298.4 22.3 253 9-331 4-263 (266)
89 KOG1682 Enoyl-CoA isomerase [L 100.0 1.6E-39 3.5E-44 287.7 20.1 254 12-339 32-286 (287)
90 TIGR03222 benzo_boxC benzoyl-C 100.0 4.2E-38 9.1E-43 325.7 20.6 196 8-203 7-222 (546)
91 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.6E-37 5.5E-42 320.8 20.7 196 8-203 11-226 (550)
92 PF13766 ECH_C: 2-enoyl-CoA Hy 100.0 7.9E-30 1.7E-34 214.6 10.0 117 232-355 2-118 (118)
93 cd07014 S49_SppA Signal peptid 99.8 2.9E-18 6.3E-23 154.7 9.3 141 39-197 22-173 (177)
94 cd07020 Clp_protease_NfeD_1 No 99.7 1.6E-17 3.5E-22 151.2 11.4 145 23-194 2-166 (187)
95 cd07019 S49_SppA_1 Signal pept 99.6 8.4E-15 1.8E-19 135.9 8.3 88 35-140 17-104 (211)
96 cd00394 Clp_protease_like Case 99.5 3.3E-13 7.2E-18 119.6 10.9 134 36-190 8-161 (161)
97 TIGR00705 SppA_67K signal pept 99.5 1.5E-13 3.3E-18 145.0 9.5 157 18-192 306-510 (584)
98 cd07022 S49_Sppa_36K_type Sign 99.4 9.2E-13 2E-17 122.5 11.7 95 28-141 13-108 (214)
99 cd07016 S14_ClpP_1 Caseinolyti 99.3 3.7E-12 8E-17 113.0 8.8 128 39-190 15-160 (160)
100 cd07023 S49_Sppa_N_C Signal pe 99.3 6.3E-12 1.4E-16 116.3 10.4 100 22-141 2-101 (208)
101 TIGR00706 SppA_dom signal pept 99.2 4.5E-11 9.7E-16 110.6 10.1 149 22-197 2-199 (207)
102 cd07021 Clp_protease_NfeD_like 99.1 7E-10 1.5E-14 100.1 11.7 140 23-193 2-171 (178)
103 cd07018 S49_SppA_67K_type Sign 99.1 5.6E-10 1.2E-14 104.4 10.3 90 34-142 24-113 (222)
104 cd07013 S14_ClpP Caseinolytic 98.6 2.5E-07 5.4E-12 82.4 8.4 134 36-190 9-162 (162)
105 PRK00277 clpP ATP-dependent Cl 98.6 5.1E-07 1.1E-11 83.1 10.6 141 22-193 31-196 (200)
106 KOG1683 Hydroxyacyl-CoA dehydr 98.5 1.1E-07 2.4E-12 92.9 5.3 176 14-193 57-240 (380)
107 cd07015 Clp_protease_NfeD Nodu 98.5 1.9E-06 4.1E-11 77.3 11.8 137 35-193 9-165 (172)
108 PRK12553 ATP-dependent Clp pro 98.3 1.1E-05 2.4E-10 74.6 11.9 144 22-193 35-202 (207)
109 cd07017 S14_ClpP_2 Caseinolyti 98.2 1.1E-05 2.3E-10 72.5 10.0 140 23-190 10-171 (171)
110 PRK12319 acetyl-CoA carboxylas 98.2 0.00012 2.6E-09 69.7 17.4 137 33-194 76-215 (256)
111 PRK10949 protease 4; Provision 98.1 2.2E-05 4.8E-10 83.7 12.7 159 19-198 325-534 (618)
112 CHL00198 accA acetyl-CoA carbo 98.1 0.00026 5.7E-09 69.2 18.6 141 32-194 131-271 (322)
113 TIGR00513 accA acetyl-CoA carb 98.1 0.00043 9.4E-09 67.6 19.4 138 32-194 128-268 (316)
114 PF00574 CLP_protease: Clp pro 98.1 1.6E-05 3.5E-10 71.8 8.8 143 23-193 17-181 (182)
115 PRK14512 ATP-dependent Clp pro 98.1 5E-05 1.1E-09 69.7 11.6 147 21-193 22-188 (197)
116 CHL00028 clpP ATP-dependent Cl 98.0 6.7E-05 1.4E-09 69.0 12.1 146 22-194 30-197 (200)
117 TIGR00493 clpP ATP-dependent C 98.0 9.1E-05 2E-09 67.7 12.3 146 21-192 25-190 (191)
118 PRK05724 acetyl-CoA carboxylas 98.0 0.00071 1.5E-08 66.2 18.9 140 33-194 129-268 (319)
119 PLN03230 acetyl-coenzyme A car 98.0 0.00093 2E-08 67.1 20.0 137 34-194 200-338 (431)
120 PLN03229 acetyl-coenzyme A car 97.9 0.0011 2.4E-08 70.6 20.5 140 32-193 219-358 (762)
121 PRK14514 ATP-dependent Clp pro 97.7 0.00065 1.4E-08 63.3 12.4 134 36-193 63-219 (221)
122 PRK14513 ATP-dependent Clp pro 97.6 0.00085 1.8E-08 61.7 11.9 135 35-195 35-194 (201)
123 PRK11778 putative inner membra 97.5 0.00069 1.5E-08 66.8 11.1 155 19-196 89-289 (330)
124 PRK12551 ATP-dependent Clp pro 97.5 0.0013 2.8E-08 60.3 11.6 146 23-194 26-191 (196)
125 COG0616 SppA Periplasmic serin 97.5 0.0009 1.9E-08 66.0 10.7 82 41-141 82-163 (317)
126 TIGR03133 malonate_beta malona 97.4 0.0035 7.7E-08 60.3 13.6 148 24-195 63-219 (274)
127 TIGR03134 malonate_gamma malon 97.3 0.012 2.6E-07 55.6 15.9 156 19-196 30-192 (238)
128 PRK05654 acetyl-CoA carboxylas 97.2 0.007 1.5E-07 58.9 13.9 156 18-203 118-276 (292)
129 PRK07189 malonate decarboxylas 97.2 0.0055 1.2E-07 59.6 12.2 150 22-195 70-228 (301)
130 PF01972 SDH_sah: Serine dehyd 97.1 0.0015 3.2E-08 62.3 7.3 94 34-151 70-163 (285)
131 TIGR00515 accD acetyl-CoA carb 97.0 0.02 4.2E-07 55.6 14.4 156 18-203 117-275 (285)
132 PRK12552 ATP-dependent Clp pro 97.0 0.014 3E-07 54.5 12.4 139 36-193 49-214 (222)
133 TIGR00705 SppA_67K signal pept 96.8 0.012 2.7E-07 62.7 12.5 85 39-141 76-160 (584)
134 COG0740 ClpP Protease subunit 96.8 0.0037 8.1E-08 57.1 7.3 146 24-196 29-195 (200)
135 CHL00174 accD acetyl-CoA carbo 96.8 0.035 7.6E-07 53.9 14.3 139 32-203 145-289 (296)
136 PF01343 Peptidase_S49: Peptid 96.7 0.0013 2.8E-08 58.0 3.2 97 102-198 2-145 (154)
137 TIGR01117 mmdA methylmalonyl-C 96.3 0.085 1.8E-06 55.5 14.5 160 19-198 313-486 (512)
138 PLN02820 3-methylcrotonyl-CoA 96.0 0.069 1.5E-06 56.7 12.0 152 19-195 127-281 (569)
139 PRK10949 protease 4; Provision 95.9 0.071 1.5E-06 57.2 11.3 85 39-141 95-179 (618)
140 COG0777 AccD Acetyl-CoA carbox 95.5 0.16 3.6E-06 48.3 10.8 141 22-198 124-272 (294)
141 PF01039 Carboxyl_trans: Carbo 95.3 0.12 2.6E-06 54.1 10.4 133 28-195 65-207 (493)
142 TIGR01117 mmdA methylmalonyl-C 95.0 0.25 5.5E-06 51.9 11.8 148 19-195 80-230 (512)
143 COG0825 AccA Acetyl-CoA carbox 94.3 0.31 6.8E-06 46.9 9.4 87 98-193 180-266 (317)
144 PLN02157 3-hydroxyisobutyryl-C 94.3 0.071 1.5E-06 54.3 5.5 68 269-342 228-298 (401)
145 COG1030 NfeD Membrane-bound se 93.0 1.7 3.8E-05 44.3 12.7 147 19-192 25-187 (436)
146 PF01039 Carboxyl_trans: Carbo 92.6 0.54 1.2E-05 49.3 9.0 164 19-198 292-469 (493)
147 PLN02820 3-methylcrotonyl-CoA 90.5 4.3 9.4E-05 43.3 13.0 144 34-197 380-544 (569)
148 KOG0840 ATP-dependent Clp prot 90.5 1.4 2.9E-05 41.8 8.1 140 23-193 93-257 (275)
149 COG4799 Acetyl-CoA carboxylase 88.1 2.6 5.7E-05 44.2 9.0 104 20-137 90-194 (526)
150 COG4799 Acetyl-CoA carboxylase 80.7 13 0.00028 39.2 10.1 126 19-160 322-448 (526)
151 KOG0540 3-Methylcrotonyl-CoA c 76.3 24 0.00052 36.3 10.2 155 20-197 348-511 (536)
152 PF14842 FliG_N: FliG N-termin 63.4 12 0.00026 30.7 4.2 91 160-257 4-100 (108)
153 COG4565 CitB Response regulato 61.0 14 0.00031 34.3 4.6 57 148-204 55-115 (224)
154 PTZ00187 succinyl-CoA syntheta 60.3 21 0.00045 35.3 6.0 53 44-118 212-264 (317)
155 PRK07194 fliG flagellar motor 55.3 1.8E+02 0.0038 29.0 11.7 158 161-328 7-181 (334)
156 COG0074 SucD Succinyl-CoA synt 54.5 34 0.00073 33.2 6.1 73 19-118 145-240 (293)
157 PLN02522 ATP citrate (pro-S)-l 52.0 38 0.00083 36.5 6.7 50 44-118 210-262 (608)
158 PF13607 Succ_CoA_lig: Succiny 51.2 31 0.00068 29.7 5.0 55 43-120 41-95 (138)
159 PF00549 Ligase_CoA: CoA-ligas 45.9 38 0.00082 29.8 4.7 62 43-119 60-121 (153)
160 TIGR00207 fliG flagellar motor 45.3 3.2E+02 0.0069 27.2 11.7 159 161-328 9-184 (338)
161 TIGR00237 xseA exodeoxyribonuc 44.3 47 0.001 34.2 5.9 79 37-137 168-248 (432)
162 smart00250 PLEC Plectin repeat 42.9 19 0.00041 23.6 1.8 19 171-189 17-35 (38)
163 PF02601 Exonuc_VII_L: Exonucl 42.1 56 0.0012 31.9 5.8 78 38-137 54-136 (319)
164 TIGR00377 ant_ant_sig anti-ant 40.2 1E+02 0.0022 24.3 6.2 49 13-66 4-52 (108)
165 PF00681 Plectin: Plectin repe 38.4 16 0.00034 25.0 0.9 19 171-189 17-35 (45)
166 COG1570 XseA Exonuclease VII, 37.1 74 0.0016 32.9 5.8 38 96-136 215-253 (440)
167 smart00870 Asparaginase Aspara 35.9 1E+02 0.0022 30.4 6.5 32 34-65 55-87 (323)
168 KOG4391 Predicted alpha/beta h 34.9 15 0.00033 34.4 0.4 91 105-198 146-242 (300)
169 PRK05686 fliG flagellar motor 34.1 2.1E+02 0.0045 28.4 8.5 159 160-328 11-186 (339)
170 PF14024 DUF4240: Protein of u 33.4 2E+02 0.0043 24.3 7.1 60 269-332 27-86 (128)
171 PF01740 STAS: STAS domain; I 29.0 2.1E+02 0.0045 22.9 6.4 48 14-66 2-57 (117)
172 TIGR02886 spore_II_AA anti-sig 28.5 2.8E+02 0.0061 21.7 7.0 47 15-66 2-48 (106)
173 COG0252 AnsB L-asparaginase/ar 26.4 1.7E+02 0.0037 29.3 6.3 36 26-63 72-107 (351)
174 PRK00286 xseA exodeoxyribonucl 25.8 1.2E+02 0.0026 31.1 5.4 40 95-137 213-253 (438)
175 PF00191 Annexin: Annexin; In 24.5 2.7E+02 0.0058 19.9 5.7 46 270-326 20-65 (66)
176 TIGR02717 AcCoA-syn-alpha acet 24.5 1.8E+02 0.004 30.0 6.4 53 43-118 190-242 (447)
177 TIGR02153 gatD_arch glutamyl-t 24.4 2.3E+02 0.0049 29.1 6.9 33 34-66 118-150 (404)
178 KOG1255 Succinyl-CoA synthetas 24.1 1.5E+02 0.0033 28.2 5.0 57 44-119 219-275 (329)
179 PLN00125 Succinyl-CoA ligase [ 23.5 1.6E+02 0.0034 28.9 5.3 12 106-117 233-244 (300)
180 PF03464 eRF1_2: eRF1 domain 2 23.5 1.3E+02 0.0029 25.3 4.3 45 22-66 25-83 (133)
181 PF06744 DUF1215: Protein of u 23.3 4.3E+02 0.0094 21.9 7.9 38 319-359 42-79 (125)
182 KOG0610 Putative serine/threon 23.3 1.3E+02 0.0028 31.0 4.7 64 68-131 157-232 (459)
183 PRK13266 Thf1-like protein; Re 23.1 2.3E+02 0.005 26.6 6.1 83 159-259 27-118 (225)
184 TIGR01019 sucCoAalpha succinyl 22.3 2.3E+02 0.005 27.5 6.2 14 105-118 224-237 (286)
185 cd07043 STAS_anti-anti-sigma_f 22.0 2.3E+02 0.005 21.5 5.3 50 16-71 3-53 (99)
186 PF06258 Mito_fiss_Elm1: Mitoc 22.0 7.2E+02 0.016 24.3 9.7 136 8-144 95-245 (311)
187 PRK05678 succinyl-CoA syntheta 22.0 2.4E+02 0.0053 27.4 6.3 14 105-118 226-239 (291)
188 KOG0960 Mitochondrial processi 21.9 1.4E+02 0.0031 30.5 4.7 52 130-183 43-96 (467)
189 TIGR03060 PS_II_psb29 photosys 21.6 2.3E+02 0.005 26.4 5.7 100 159-279 27-135 (214)
190 PRK14053 methyltransferase; Pr 21.3 99 0.0021 28.1 3.1 68 14-81 16-90 (194)
191 cd04241 AAK_FomA-like AAK_FomA 21.1 1.8E+02 0.0038 27.3 5.1 39 27-68 11-49 (252)
192 PF09905 DUF2132: Uncharacteri 20.9 1.1E+02 0.0024 22.8 2.7 28 241-274 34-62 (64)
193 PLN03060 inositol phosphatase- 20.7 2.7E+02 0.0059 25.7 5.9 82 159-258 25-115 (206)
194 PF06833 MdcE: Malonate decarb 20.5 1.2E+02 0.0027 28.6 3.7 144 33-196 40-190 (234)
195 PF11264 ThylakoidFormat: Thyl 20.3 2.9E+02 0.0063 25.8 6.1 81 159-257 22-111 (216)
No 1
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=6e-95 Score=688.61 Aligned_cols=358 Identities=44% Similarity=0.726 Sum_probs=335.5
Q ss_pred CCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCC-
Q 016043 7 KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNS- 84 (396)
Q Consensus 7 ~~~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~- 84 (396)
.....+.|+++.++..++||||||++|||||.+|+..+...|..|+.++.+++||++|+| |+|||||||+........
T Consensus 33 ~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~ 112 (401)
T KOG1684|consen 33 STDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDK 112 (401)
T ss_pred ccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcC
Confidence 345667899999999999999999999999999999999999999999999999999997 999999999977663221
Q ss_pred -chhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH
Q 016043 85 -KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG 163 (396)
Q Consensus 85 -~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G 163 (396)
......||+.+|.++++|++|.||+||+|||++||||+||++|+.||||||+|.|+|||+.||+|||+|+||+|+|+||
T Consensus 113 ~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg 192 (401)
T KOG1684|consen 113 ETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG 192 (401)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc
Confidence 2234899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCH-HHHHHHHHHhhcccCCChhhhHHHHHHHHHh
Q 016043 164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDE-IAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC 242 (396)
Q Consensus 164 ~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 242 (396)
..|+||+|||.+++|.||+++||+|||||+++|+.++++|.....+|+ +.|++.|++|+..+.++++.+..+++.|++|
T Consensus 193 ~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~ 272 (401)
T KOG1684|consen 193 YLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKC 272 (401)
T ss_pred HHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHh
Confidence 999999999999999999999999999999999999999984334444 8899999999999877888888999999999
Q ss_pred hccCCHHHHHHHHHHhh-ccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHH
Q 016043 243 FSKETVAEIIKSFEAEA-GKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY 321 (396)
Q Consensus 243 f~~~tveei~~~L~~~~-~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~ 321 (396)
|+++||||||+.|++.. +.+..+||++++++|.++||+|+++|.|+|+++..+++++|+.+||++..+++.+ +||.
T Consensus 273 Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~---~DF~ 349 (401)
T KOG1684|consen 273 FSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMR---GDFC 349 (401)
T ss_pred hccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc---cchh
Confidence 99999999999996655 4477899999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCChHHHhcccCcCCCCCcCccCC
Q 016043 322 EGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPE 367 (396)
Q Consensus 322 eGv~A~lidK~r~P~w~~~~l~~v~~~~v~~~f~~~~~~~~l~~~~ 367 (396)
|||||.|||||++|||+|.++++|++++|+.||.|++...+|.+|.
T Consensus 350 EGvRA~LIDKd~~PKW~p~~l~~V~e~~Vdn~F~~~p~~~eLklp~ 395 (401)
T KOG1684|consen 350 EGVRAVLIDKDQNPKWDPASLADVTEDEVDNYFKPLPSKSELKLPV 395 (401)
T ss_pred hhhhheeecCCcCCCCCCcchhhcCHHHHHHhccCCCCcccccCch
Confidence 9999999999999999999999999999999999988888999995
No 2
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.3e-84 Score=650.07 Aligned_cols=362 Identities=42% Similarity=0.706 Sum_probs=330.5
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-C-ch
Q 016043 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S-KD 86 (396)
Q Consensus 9 ~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~-~-~~ 86 (396)
...+.|+++..+++++||||||+++||||.+|+.+|.++|+.|++|++|++|||+|+|++||||+|++++++... . ..
T Consensus 39 ~~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~ 118 (407)
T PLN02851 39 DLQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVE 118 (407)
T ss_pred CCCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchH
Confidence 345679999999999999999999999999999999999999999999999999999999999999999876322 1 12
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHH
Q 016043 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLG 166 (396)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a 166 (396)
....||+.+|++++.|.++|||+||+|||+|||||++|+++|||||||++++|+|||++||++|++|++|+|+|++|..|
T Consensus 119 ~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g 198 (407)
T PLN02851 119 ECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLG 198 (407)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred HHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccC
Q 016043 167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246 (396)
Q Consensus 167 ~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 246 (396)
.||+|||++++|+||+++||+||+||+++++.+.+.+.++...++..++.++++|...+.+++.++..+++.|++||+++
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~ 278 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD 278 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998887777888999999997653334456777899999999999
Q ss_pred CHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh---cCCchHHHHH
Q 016043 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIISADIYEG 323 (396)
Q Consensus 247 tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~~d~~eG 323 (396)
|++||+++|+.+....+++||+++++.|.++||+|+++|++++++++..+|++||++|+++..+++. + +||.||
T Consensus 279 sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~---~DF~EG 355 (407)
T PLN02851 279 TVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVS---GDFCEG 355 (407)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcc---chHHHH
Confidence 9999999999854333578999999999999999999999999999999999999999999999984 6 999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCChHHHhcccCcCCCC-CcCccCCCccccc
Q 016043 324 IRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGED-LELQIPENENCRW 373 (396)
Q Consensus 324 v~A~lidK~r~P~w~~~~l~~v~~~~v~~~f~~~~~~-~~l~~~~~~~~~~ 373 (396)
|||.|||||++|+|+|+++++|++++|++||.|++++ .+|+||.+.+++|
T Consensus 356 VRA~LIDKd~~P~W~p~sl~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~~~ 406 (407)
T PLN02851 356 VRARLVDKDFAPKWDPPSLGEVSKDMVDCYFTPLDESESELELPTAQREPY 406 (407)
T ss_pred HHHHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCcccccCCccccccc
Confidence 9999999999999999999999999999999999663 2799987655554
No 3
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=2.5e-84 Score=646.21 Aligned_cols=369 Identities=41% Similarity=0.706 Sum_probs=330.8
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-Cc-
Q 016043 8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SK- 85 (396)
Q Consensus 8 ~~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~-~~- 85 (396)
+++...|+++.++++++||||||+++|+||.+|+.+|.++|+.|+.|++|++|||+|+|++||||+|+++++.... +.
T Consensus 5 ~~~~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~ 84 (381)
T PLN02988 5 MASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNW 84 (381)
T ss_pred cccCCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccch
Confidence 4555679999999999999999999999999999999999999999999999999999999999999999864221 11
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHH
Q 016043 86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHL 165 (396)
Q Consensus 86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~ 165 (396)
.....||+.+|.+++.|.++|||+||+|||+|||||++|+++|||||||++|+|+|||++||++|++|++++|+|++|..
T Consensus 85 ~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~ 164 (381)
T PLN02988 85 RLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFF 164 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHH
Confidence 11246788889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhcc
Q 016043 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (396)
Q Consensus 166 a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~ 245 (396)
|.||+|||++++|.||+++|||||+||++++.+++.+|+++...++..+..+++.|..++...+.++..++++|++||+.
T Consensus 165 ~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~ 244 (381)
T PLN02988 165 GEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSR 244 (381)
T ss_pred HHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999877777778888899998765433345666779999999999
Q ss_pred CCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 016043 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR 325 (396)
Q Consensus 246 ~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~ 325 (396)
+|++||+++|+.+....+++|++++++.|.++||+|+++|++++++++..++.+||++|+++..+++....++||.||||
T Consensus 245 ~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVR 324 (381)
T PLN02988 245 RTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCR 324 (381)
T ss_pred CCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 99999999999854333578999999999999999999999999999999999999999999999998211299999999
Q ss_pred HHHhhcCCCCCCCCCCCCCCChHHHhcccCcCCCCC---cCccCCC--ccccccCC
Q 016043 326 ALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDL---ELQIPEN--ENCRWDGK 376 (396)
Q Consensus 326 A~lidK~r~P~w~~~~l~~v~~~~v~~~f~~~~~~~---~l~~~~~--~~~~~~~~ 376 (396)
|.|||||++|+|+|+++++|++++|++||+|++.++ +|+||++ .+++|..|
T Consensus 325 A~LiDKd~~P~W~p~~l~~v~~~~v~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~ 380 (381)
T PLN02988 325 AILVDKDKNPKWEPRRLEDMKDSMVEQYFERVEEEEEWDDLKLPPRNNLPALAIAK 380 (381)
T ss_pred HHhcCCCCCCCCCCCChhhCCHHHHHHHhCCCCccccccccCCcccccccchhhcc
Confidence 999999999999999999999999999999997654 5999973 44555544
No 4
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.3e-81 Score=627.02 Aligned_cols=361 Identities=42% Similarity=0.723 Sum_probs=322.0
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-C-chhH
Q 016043 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-S-KDSC 88 (396)
Q Consensus 11 ~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~-~-~~~~ 88 (396)
.++|+++.+++|++||||||+++||||.+|+.+|.++|+.|+.|++|++|||+|+|++||||+||++++.... + ....
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 5679999999999999999999999999999999999999999999999999999999999999999875321 1 1223
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF 168 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 168 (396)
..+|..+|++++.|.++|||+||+|||+|||||++|+++|||||||++++|+|||++||++|++|++|+|+|++|..|.|
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 195 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tv 248 (396)
|+|||++++|+||+++|||||+||+++++.+.+.+.++....+..+..+.+.+.....+.+..+....+.|++||+.+++
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f~~~d~ 275 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTV 275 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999998777767666666777888888877654322344556668999999999999
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 249 eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
+||+++|+.+...+..+|++++++.|.++||+|+++|++++++++..+|++||++|+++..+++....++||.|||||.|
T Consensus 276 ~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~L 355 (401)
T PLN02157 276 EEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARL 355 (401)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 99999998754445678999999999999999999999999999999999999999999999996211289999999999
Q ss_pred hhcCCCCCCCCCCCCCCChHHHhcccCcCCC-CCcCccCCCccc
Q 016043 329 IEKDNAPKWDPPTLDKVDDDKVDLVFQPFGE-DLELQIPENENC 371 (396)
Q Consensus 329 idK~r~P~w~~~~l~~v~~~~v~~~f~~~~~-~~~l~~~~~~~~ 371 (396)
||||++|+|+|+++++|++++|++||.|+++ .++|+||...++
T Consensus 356 iDKd~~P~W~p~~l~~V~~~~v~~~f~~~~~~~~~l~~~~~~~~ 399 (401)
T PLN02157 356 IDKDEAPKWDPPSLEKVSEDMVDDYFCALTPTEPDLDLPVKLRE 399 (401)
T ss_pred cCCCCCCCCCCCChhhCCHHHHHHHhCCCCCCccccccchhhhh
Confidence 9999999999999999999999999999973 247888865543
No 5
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.9e-77 Score=598.69 Aligned_cols=375 Identities=78% Similarity=1.249 Sum_probs=339.8
Q ss_pred CCCCCCCCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhcc
Q 016043 1 MAQGVVKNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYD 80 (396)
Q Consensus 1 M~~~~~~~~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~ 80 (396)
|+|.+ ..+.++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|+|++||+|+|++++..
T Consensus 1 ~~~~~-~~~~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~ 79 (379)
T PLN02874 1 MAQQV-QNPAEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYD 79 (379)
T ss_pred CCCCC-CCCCCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHh
Confidence 66664 45677789999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhh
Q 016043 81 GRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSR 160 (396)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~r 160 (396)
..........++...+.+...|.+++||+||+|||+|+|||++|+++||+|||+++++|+|||+++|++|++|++++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~r 159 (379)
T PLN02874 80 GRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSR 159 (379)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHh
Confidence 32112223455566677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHH
Q 016043 161 LPGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240 (396)
Q Consensus 161 l~G~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 240 (396)
++|..+++|+|||++++|+||+++|||+++||++++.++..++.++...+...++.+|++|..........+....++|+
T Consensus 160 l~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 239 (379)
T PLN02874 160 LPGHLGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWIN 239 (379)
T ss_pred hhHHHHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHH
Confidence 99988999999999999999999999999999999998888888887778889999999998754444556667799999
Q ss_pred HhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHh---cCCc
Q 016043 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILR---AIIS 317 (396)
Q Consensus 241 ~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~---~~~~ 317 (396)
+||+.+++.||+++|+++..+..++||.+++++|+++||.|++++|++++++...++++++..|+++..+++. +
T Consensus 240 ~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~--- 316 (379)
T PLN02874 240 ECFSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVS--- 316 (379)
T ss_pred HHhCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcC---
Confidence 9999999999999999876656689999999999999999999999999999888999999999999999988 7
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCCCCCChHHHhcccCcCCCCCcCccCCCccccccCCccc
Q 016043 318 ADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGEDLELQIPENENCRWDGKYEN 379 (396)
Q Consensus 318 ~d~~eGv~A~lidK~r~P~w~~~~l~~v~~~~v~~~f~~~~~~~~l~~~~~~~~~~~~~~~~ 379 (396)
+||+|||+||++||+|+|+|+++++++|++++|++||.|++.+.+|+||.+..++|.+||+.
T Consensus 317 ~D~~EGv~AflidK~r~P~w~~~~~~~v~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (379)
T PLN02874 317 DDVYEGIRALVIDKDNAPKWNPSTLDEVTDEKVDLVFQPFKAREELQLPEEEENRWSGKYEH 378 (379)
T ss_pred cchhhccceEEEcCCCCCCCCCCChhhCCHHHHHHHhCCCCCccccCCCccccchhhhhhcc
Confidence 99999999999899899999999999999999999999997766799998888888888763
No 6
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=6.3e-69 Score=531.06 Aligned_cols=336 Identities=39% Similarity=0.701 Sum_probs=306.1
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCC-Cchh-H
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN-SKDS-C 88 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~-~~~~-~ 88 (396)
+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++..... .... .
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 4689999999999999999999999999999999999999999999999999999 99999999999864211 1111 1
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF 168 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 168 (396)
..+++..++++..|.+++||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 25666667788899999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCC-HHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGD-EIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
|+|||++++|+||+++|||+++||++++...++++.++...+ .+.+..++.+|... .+...+.....+|++||+..+
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 240 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATP--APASELAAQRAWIDECFAGDT 240 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccC--CCcchhHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999988777787776544 36678899998776 344578899999999999999
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+++|+++|+++ .++||.+++++|+++||.|++.+|++++++...++++++..|++++..++.+ +|++||+++|
T Consensus 241 ~~~~~~~l~~~----~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~egv~af 313 (342)
T PRK05617 241 VEDIIAALEAD----GGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRS---PDFVEGVRAV 313 (342)
T ss_pred HHHHHHHHHhc----cHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC---CchhhccceE
Confidence 99999999994 5689999999999999999999999999998889999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCCCCCCCCChHHHhcccCc
Q 016043 328 TIEKDNAPKWDPPTLDKVDDDKVDLVFQP 356 (396)
Q Consensus 328 lidK~r~P~w~~~~l~~v~~~~v~~~f~~ 356 (396)
+++|+|.|+|+++++++|++++|++||+|
T Consensus 314 l~ek~r~p~~~~~~~~~~~~~~~~~~~~~ 342 (342)
T PRK05617 314 LIDKDRNPKWSPATLEDVTPEDVEAFFAP 342 (342)
T ss_pred EEcCCCCCCCCCCChHhCCHHHHHHhhCC
Confidence 86776899999999999999999999998
No 7
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-55 Score=420.24 Aligned_cols=253 Identities=26% Similarity=0.362 Sum_probs=229.3
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHH
Q 016043 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLE 90 (396)
Q Consensus 11 ~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~ 90 (396)
++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.|++||+|+|++++..... . ..
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~---~~ 78 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF-M---DV 78 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch-h---HH
Confidence 4568999999999999999999999999999999999999999999999999999999999999999764211 1 12
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHH
Q 016043 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (396)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L 169 (396)
+......++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.+|
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 158 (257)
T PRK05862 79 YKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDL 158 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 2233345677899999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHH
Q 016043 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA 249 (396)
Q Consensus 170 ~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tve 249 (396)
+|||++++|+||+++||++++||++++.+.+.
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 190 (257)
T PRK05862 159 CLTGRMMDAAEAERAGLVSRVVPADKLLDEAL------------------------------------------------ 190 (257)
T ss_pred HHhCCccCHHHHHHcCCCCEeeCHhHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887765333
Q ss_pred HHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016043 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI 329 (396)
Q Consensus 250 ei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~li 329 (396)
+.+++|++.+|.+++.+|++++.....++.+++..|.+.+..++.+ +|++||+++|+
T Consensus 191 -------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~~~~e~i~af~- 247 (257)
T PRK05862 191 -------------------AAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFAT---EDQKEGMAAFV- 247 (257)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHh-
Confidence 3378899999999999999999988889999999999999999999 99999999999
Q ss_pred hcCCCCCCCC
Q 016043 330 EKDNAPKWDP 339 (396)
Q Consensus 330 dK~r~P~w~~ 339 (396)
+| |+|+|++
T Consensus 248 ~k-r~p~~~~ 256 (257)
T PRK05862 248 EK-RKPVFKH 256 (257)
T ss_pred cc-CCCCCCC
Confidence 66 8999975
No 8
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-55 Score=423.42 Aligned_cols=259 Identities=23% Similarity=0.301 Sum_probs=231.3
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-----
Q 016043 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN----- 83 (396)
Q Consensus 9 ~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~----- 83 (396)
+.++.|.++.+++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||+|.|++||+|+|++++.....
T Consensus 3 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06142 3 TTYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKD 82 (272)
T ss_pred CCcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccccc
Confidence 345679999999999999999999999999999999999999999999999999999999999999998754110
Q ss_pred ----CchhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHh
Q 016043 84 ----SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHS 159 (396)
Q Consensus 84 ----~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~ 159 (396)
....+..+.....+++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 162 (272)
T PRK06142 83 GLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLP 162 (272)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHH
Confidence 0111233444556778889999999999999999999999999999999999999999999999999999999999
Q ss_pred hccH-HHHHHHhhcCCCccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHH
Q 016043 160 RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQS 237 (396)
Q Consensus 160 rl~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (396)
|++| .++.+|++||++++|+||+++|||+++||+ +++.+.+.
T Consensus 163 ~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~------------------------------------ 206 (272)
T PRK06142 163 RIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAH------------------------------------ 206 (272)
T ss_pred HHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHH------------------------------------
Confidence 9999 999999999999999999999999999996 66654333
Q ss_pred HHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCc
Q 016043 238 IIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIIS 317 (396)
Q Consensus 238 ~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~ 317 (396)
+++++|++.||.+++.+|+++++....++.+++..|...+..++.+
T Consensus 207 -------------------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~--- 252 (272)
T PRK06142 207 -------------------------------ATAREIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPS--- 252 (272)
T ss_pred -------------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---
Confidence 3378899999999999999999887889999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCCCCC
Q 016043 318 ADIYEGIRALTIEKDNAPKWDP 339 (396)
Q Consensus 318 ~d~~eGv~A~lidK~r~P~w~~ 339 (396)
+|++|||++|+ +| |+|+|+.
T Consensus 253 ~d~~egv~af~-~k-r~p~~~~ 272 (272)
T PRK06142 253 KDLTEAIAAHM-EK-RPPEFTG 272 (272)
T ss_pred ccHHHHHHHHh-cC-CCCCCCC
Confidence 99999999999 66 8999963
No 9
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=2e-55 Score=420.30 Aligned_cols=256 Identities=25% Similarity=0.391 Sum_probs=232.6
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhH
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC 88 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~ 88 (396)
++..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|+| ++||+|+|++++..... ...
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~--~~~ 79 (260)
T PRK05809 2 ELKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE--EEG 79 (260)
T ss_pred CcceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh--HHH
Confidence 456789999999999999999999999999999999999999999999999999999 99999999999865321 112
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
..+.....+++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.
T Consensus 80 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 159 (260)
T PRK05809 80 RKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAK 159 (260)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence 344444567888899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|++||++++|+||+++|||+++||++++.+.+
T Consensus 160 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a----------------------------------------------- 192 (260)
T PRK05809 160 ELIYTGDMINAEEALRIGLVNKVVEPEKLMEEA----------------------------------------------- 192 (260)
T ss_pred HHHHhCCCCCHHHHHHcCCCCcccChHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999987765433
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
.+.+++|++.||.+++.+|++++.+...++.+++..|.+.+..++.+ +|++||+++|
T Consensus 193 --------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~egi~af 249 (260)
T PRK05809 193 --------------------KALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFST---EDQTEGMTAF 249 (260)
T ss_pred --------------------HHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 34478899999999999999999988889999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCC
Q 016043 328 TIEKDNAPKWDP 339 (396)
Q Consensus 328 lidK~r~P~w~~ 339 (396)
+ +| |+|+|..
T Consensus 250 ~-~~-r~p~~~~ 259 (260)
T PRK05809 250 V-EK-REKNFKN 259 (260)
T ss_pred h-cC-CCCCCCC
Confidence 8 66 8999975
No 10
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-55 Score=419.52 Aligned_cols=254 Identities=28% Similarity=0.451 Sum_probs=231.0
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCC--CchhH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN--SKDSC 88 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~--~~~~~ 88 (396)
+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++..... .....
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK05980 3 DTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL 82 (260)
T ss_pred ceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence 3588999999999999999999999999999999999999999999999999999 89999999998754221 11123
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
..++...++++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 162 (260)
T PRK05980 83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRAL 162 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHH
Confidence 456666677888999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|+|||++++|+||+++||||++||++++.+.+.
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 196 (260)
T PRK05980 163 ELLLTGDAFSAERALEIGLVNAVVPHEELLPAAR---------------------------------------------- 196 (260)
T ss_pred HHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887665333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+.+++|++.+|.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|
T Consensus 197 ---------------------~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af 252 (260)
T PRK05980 197 ---------------------ALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGS---ADLREGLAAW 252 (260)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence 3378899999999999999999988889999999999999999999 9999999999
Q ss_pred HhhcCCCCCC
Q 016043 328 TIEKDNAPKW 337 (396)
Q Consensus 328 lidK~r~P~w 337 (396)
+ +| |+|+|
T Consensus 253 ~-~k-r~p~~ 260 (260)
T PRK05980 253 I-ER-RRPAY 260 (260)
T ss_pred h-cc-CCCCC
Confidence 9 66 88998
No 11
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-55 Score=417.74 Aligned_cols=252 Identities=24% Similarity=0.386 Sum_probs=228.9
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhHHHH
Q 016043 13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEV 91 (396)
Q Consensus 13 ~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~~~~ 91 (396)
.|.++.+++|++||||||++ |+||.+|+.+|.++++.+++|++|++|||+|+| ++||+|+|++++..... .....+
T Consensus 4 ~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~--~~~~~~ 80 (258)
T PRK09076 4 ELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDK--AVAREM 80 (258)
T ss_pred EEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcCh--hhHHHH
Confidence 58899999999999999986 999999999999999999999999999999999 89999999998754211 111334
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHh
Q 016043 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (396)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~ 170 (396)
......++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+
T Consensus 81 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 81 ARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 445567788899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHH
Q 016043 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tvee 250 (396)
|||++++|+||+++||++++||++++.+.+.
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------- 191 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAAL------------------------------------------------- 191 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHH-------------------------------------------------
Confidence 9999999999999999999999987765333
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016043 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (396)
Q Consensus 251 i~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lid 330 (396)
+++++|++.||.+++.+|++++.....++.+.+..|...+..++.+ +|++||+++|+ +
T Consensus 192 ------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~eg~~af~-~ 249 (258)
T PRK09076 192 ------------------ALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDT---EDQREGVNAFL-E 249 (258)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-c
Confidence 3478999999999999999999888789999999999999999999 99999999999 6
Q ss_pred cCCCCCCCC
Q 016043 331 KDNAPKWDP 339 (396)
Q Consensus 331 K~r~P~w~~ 339 (396)
| |+|+|++
T Consensus 250 k-r~p~~~~ 257 (258)
T PRK09076 250 K-RAPQWKN 257 (258)
T ss_pred C-CCCCCCC
Confidence 6 8999975
No 12
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.9e-55 Score=419.50 Aligned_cols=257 Identities=21% Similarity=0.321 Sum_probs=233.5
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhHH
Q 016043 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCL 89 (396)
Q Consensus 11 ~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~~ 89 (396)
.+.|.++++++|++||||||+++|+||.+|+.+|.++++.+++|++|++|||+|.| ++||+|+|++.+...........
T Consensus 10 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 89 (269)
T PRK06127 10 TGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVA 89 (269)
T ss_pred CCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHH
Confidence 45689999999999999999999999999999999999999999999999999999 89999999998864222112224
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHH
Q 016043 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (396)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~ 168 (396)
.++...+.+...|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++.+
T Consensus 90 ~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 169 (269)
T PRK06127 90 AYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKD 169 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHHH
Confidence 55566677888999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tv 248 (396)
|+|||++++|+||+++|||+++||++++.+.+.++
T Consensus 170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~--------------------------------------------- 204 (269)
T PRK06127 170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADY--------------------------------------------- 204 (269)
T ss_pred HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999988776544333
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 249 eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
+++|++.||.+++.+|++++.....++.+.+..|...+..++.+ +|++||+++|+
T Consensus 205 ----------------------a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~~af~ 259 (269)
T PRK06127 205 ----------------------AATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDS---EDYREGRAAFM 259 (269)
T ss_pred ----------------------HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---hHHHHHHHHHh
Confidence 78899999999999999999988889999999999999999999 99999999999
Q ss_pred hhcCCCCCCCC
Q 016043 329 IEKDNAPKWDP 339 (396)
Q Consensus 329 idK~r~P~w~~ 339 (396)
+| |+|+|++
T Consensus 260 -ek-r~p~~~~ 268 (269)
T PRK06127 260 -EK-RKPVFKG 268 (269)
T ss_pred -cC-CCCCCCC
Confidence 66 8999975
No 13
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-55 Score=417.48 Aligned_cols=256 Identities=24% Similarity=0.320 Sum_probs=226.1
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHH
Q 016043 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLE 90 (396)
Q Consensus 11 ~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~ 90 (396)
++.|.++.+++|++||||||+++|+||.+|+++|.++++.++.|++|++|||+|.|++||+|+|++++............
T Consensus 4 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (263)
T PRK07799 4 GPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDG 83 (263)
T ss_pred CceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999998653211110011
Q ss_pred -H-HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 91 -V-VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 91 -~-~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
+ ...... +..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++.
T Consensus 84 ~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 162 (263)
T PRK07799 84 SYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVAC 162 (263)
T ss_pred hhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 111222 33478999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 163 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 196 (263)
T PRK07799 163 DLLLTGRHITAAEAKEIGLIGHVVPDGQALDKAL---------------------------------------------- 196 (263)
T ss_pred HHHHcCCCCCHHHHHHcCCccEecCcchHHHHHH----------------------------------------------
Confidence 9999999999999999999999999988754322
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+++++|++.||.+++.+|++++.....++.+++..|.+.+..++.+ +|++||+++|
T Consensus 197 ---------------------~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~egi~af 252 (263)
T PRK07799 197 ---------------------ELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLS---EDAKEGPRAF 252 (263)
T ss_pred ---------------------HHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---ccHHHHHHHH
Confidence 3378899999999999999999988889999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCC
Q 016043 328 TIEKDNAPKWDP 339 (396)
Q Consensus 328 lidK~r~P~w~~ 339 (396)
+ +| |+|+|+.
T Consensus 253 ~-~~-r~p~~~~ 262 (263)
T PRK07799 253 A-EK-RAPNFQG 262 (263)
T ss_pred H-cc-CCCCCCC
Confidence 9 55 8999975
No 14
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=5.7e-55 Score=415.99 Aligned_cols=252 Identities=25% Similarity=0.361 Sum_probs=228.5
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~ 91 (396)
..|.++.+++|++||||||+++|+||.+|+.+|.++++.+++|++||+|||+|.|++||+|+|++++..... . ..+
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~--~~~ 77 (255)
T PRK09674 2 SELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL--A--ATL 77 (255)
T ss_pred ceEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch--h--hhH
Confidence 458889999999999999999999999999999999999999999999999999999999999998754211 1 122
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHh
Q 016043 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (396)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~ 170 (396)
......++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus 78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ 157 (255)
T PRK09674 78 NDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMV 157 (255)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 233345677899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHH
Q 016043 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tvee 250 (396)
|||++++|+||+++|||+++||++++.+.+
T Consensus 158 l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a-------------------------------------------------- 187 (255)
T PRK09674 158 LTGESITAQQAQQAGLVSEVFPPELTLERA-------------------------------------------------- 187 (255)
T ss_pred HcCCccCHHHHHHcCCCcEecChHHHHHHH--------------------------------------------------
Confidence 999999999999999999999988765432
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016043 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (396)
Q Consensus 251 i~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lid 330 (396)
.+.+++|++.||.+++.+|++++.....++.+++..|.+.+..++.+ +|++||+++|+ +
T Consensus 188 -----------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~i~af~-~ 246 (255)
T PRK09674 188 -----------------LQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAAT---EDRHEGISAFL-E 246 (255)
T ss_pred -----------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHh-c
Confidence 34478999999999999999999988889999999999999999999 99999999999 6
Q ss_pred cCCCCCCCC
Q 016043 331 KDNAPKWDP 339 (396)
Q Consensus 331 K~r~P~w~~ 339 (396)
| |+|+|.+
T Consensus 247 k-r~p~~~~ 254 (255)
T PRK09674 247 K-RTPDFKG 254 (255)
T ss_pred c-CCCCCCC
Confidence 6 8999975
No 15
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-55 Score=415.76 Aligned_cols=253 Identities=25% Similarity=0.309 Sum_probs=228.7
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~ 91 (396)
+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++ +++|+|||||.|++||+|+|++++..... .....+
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~--~~~~~~ 77 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDA--GEGMHH 77 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccc--hhHHHH
Confidence 46889999999999999999999999999999999999987 78999999999999999999999854211 111344
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHh
Q 016043 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (396)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~ 170 (396)
+...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus 78 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 157 (255)
T PRK08150 78 SRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMM 157 (255)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 455567888899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHH
Q 016043 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tvee 250 (396)
|||++++|+||+++||||++||++++.+.+.
T Consensus 158 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------- 188 (255)
T PRK08150 158 LTGRVYDAQEGERLGLAQYLVPAGEALDKAM------------------------------------------------- 188 (255)
T ss_pred HcCCcCCHHHHHHcCCccEeeCchHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999988765333
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016043 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (396)
Q Consensus 251 i~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lid 330 (396)
+++++|+++||.+++.+|++++.....++++.+..|.+.+..++.+ +|++||+++|+ +
T Consensus 189 ------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~af~-~ 246 (255)
T PRK08150 189 ------------------ELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSA---PEAKERLRAFL-E 246 (255)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHh-c
Confidence 3378999999999999999999888889999999999988888888 99999999999 6
Q ss_pred cCCCCCCCCC
Q 016043 331 KDNAPKWDPP 340 (396)
Q Consensus 331 K~r~P~w~~~ 340 (396)
| |+|+|+|+
T Consensus 247 k-r~p~~~~~ 255 (255)
T PRK08150 247 K-KAAKVKPP 255 (255)
T ss_pred c-CCCCCCCC
Confidence 6 89999863
No 16
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6e-55 Score=416.32 Aligned_cols=253 Identities=27% Similarity=0.402 Sum_probs=230.1
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHH
Q 016043 13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVV 92 (396)
Q Consensus 13 ~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~ 92 (396)
.|.++.+++|++||||||++ |+||.+|+.+|.++++.+++|++|++|||+|.|++||+|+|++++..... ......+.
T Consensus 3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~~ 80 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTE-AEQATELA 80 (257)
T ss_pred eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCc-hhhHHHHH
Confidence 57889999999999999986 99999999999999999999999999999999999999999999854322 11223455
Q ss_pred HHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhh
Q 016043 93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL 171 (396)
Q Consensus 93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~L 171 (396)
.....++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.+|++
T Consensus 81 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 160 (257)
T PRK07658 81 QLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMML 160 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence 55567888999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHH
Q 016043 172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251 (396)
Q Consensus 172 TG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei 251 (396)
||++++|+||+++||+|++||++++.+.+.
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------- 190 (257)
T PRK07658 161 TSEPITGAEALKWGLVNGVFPEETLLDDAK-------------------------------------------------- 190 (257)
T ss_pred cCCCcCHHHHHHcCCcCeecChhHHHHHHH--------------------------------------------------
Confidence 999999999999999999999887765333
Q ss_pred HHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhc
Q 016043 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (396)
Q Consensus 252 ~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK 331 (396)
+++++|++.||.+++.+|++++.+...++.+.+..|...+..++.+ +|++||+++|+ +|
T Consensus 191 -----------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~egi~af~-~k 249 (257)
T PRK07658 191 -----------------KLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTS---EDAKEGVQAFL-EK 249 (257)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH-cC
Confidence 3478899999999999999999888889999999999999999999 99999999999 66
Q ss_pred CCCCCCCC
Q 016043 332 DNAPKWDP 339 (396)
Q Consensus 332 ~r~P~w~~ 339 (396)
|+|+|++
T Consensus 250 -r~p~~~~ 256 (257)
T PRK07658 250 -RKPSFSG 256 (257)
T ss_pred -CCCCCCC
Confidence 8999975
No 17
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.4e-55 Score=417.18 Aligned_cols=257 Identities=25% Similarity=0.366 Sum_probs=232.7
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhH
Q 016043 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC 88 (396)
Q Consensus 9 ~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~ 88 (396)
+..+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ...+
T Consensus 8 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~ 86 (266)
T PRK08139 8 TEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARG-LAYF 86 (266)
T ss_pred ccCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccc-hhHH
Confidence 455679999999999999999999999999999999999999999999999999999999999999998864221 2223
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
..+++...+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++| +++|+|++| ..+.
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 45566667788899999999999999999999999999999999999999999999999999865 578999999 9999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|+|||++++|+||+++||||++||++++.+.+.+
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~--------------------------------------------- 200 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVAR--------------------------------------------- 200 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999998887654433
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
++++|++.||.+++.+|+++++....++.+++..|...+..++.+ +|++||+++|
T Consensus 201 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af 255 (266)
T PRK08139 201 ----------------------LAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMA---EDAEEGIDAF 255 (266)
T ss_pred ----------------------HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---chHHHHHHHH
Confidence 378999999999999999999988889999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCC
Q 016043 328 TIEKDNAPKWDP 339 (396)
Q Consensus 328 lidK~r~P~w~~ 339 (396)
+ +| |+|+|.+
T Consensus 256 ~-~k-r~p~~~~ 265 (266)
T PRK08139 256 L-EK-RPPEWRG 265 (266)
T ss_pred h-cC-CCCCCCC
Confidence 9 66 8999975
No 18
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-54 Score=415.25 Aligned_cols=254 Identities=24% Similarity=0.360 Sum_probs=232.0
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhHH
Q 016043 12 QVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCL 89 (396)
Q Consensus 12 ~~v~~e~-~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~~ 89 (396)
+.|++++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.... .....
T Consensus 3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~--~~~~~ 80 (260)
T PRK07657 3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMN--EEQVR 80 (260)
T ss_pred ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCC--hhhHH
Confidence 4688886 789999999999999999999999999999999999999999999999 6999999999985421 12234
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHH
Q 016043 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (396)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~ 168 (396)
.++...+.++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.+
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~ 160 (260)
T PRK07657 81 HAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE 160 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence 55666677888999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tv 248 (396)
|+|||++++|+||+++||++++||++++.+.+.
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 193 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI----------------------------------------------- 193 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999888765333
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 249 eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
+++++|++.+|.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|+
T Consensus 194 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af~ 250 (260)
T PRK07657 194 --------------------EIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPT---KDRLEGLQAFK 250 (260)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC---HhHHHHHHHHh
Confidence 3378899999999999999999988889999999999999999999 99999999999
Q ss_pred hhcCCCCCCCC
Q 016043 329 IEKDNAPKWDP 339 (396)
Q Consensus 329 idK~r~P~w~~ 339 (396)
+| |+|+|+.
T Consensus 251 -~~-r~~~~~~ 259 (260)
T PRK07657 251 -EK-RKPMYKG 259 (260)
T ss_pred -cC-CCCCCCC
Confidence 66 8999975
No 19
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.2e-54 Score=414.11 Aligned_cols=253 Identities=27% Similarity=0.365 Sum_probs=226.0
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhH-HHHH
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC-LEVV 92 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~-~~~~ 92 (396)
|+++.+++|++||||||+++|+||.+|+.+|.++++.++.|+ +++|||+|.|++||+|+|++++.......... ..+.
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIE 79 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHH
Confidence 468889999999999999999999999999999999999999 99999999999999999999986421111111 1222
Q ss_pred HHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhh
Q 016043 93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL 171 (396)
Q Consensus 93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~L 171 (396)
.....+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+|
T Consensus 80 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l 159 (256)
T TIGR02280 80 TFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAM 159 (256)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHH
Confidence 22345677899999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHH
Q 016043 172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251 (396)
Q Consensus 172 TG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei 251 (396)
||++++|+||+++|||+++||++++.+.+.
T Consensus 160 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------- 189 (256)
T TIGR02280 160 LGEKLDARTAASWGLIWQVVDDAALMDEAQ-------------------------------------------------- 189 (256)
T ss_pred cCCCCCHHHHHHcCCcceeeChHHHHHHHH--------------------------------------------------
Confidence 999999999999999999999887765333
Q ss_pred HHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhc
Q 016043 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (396)
Q Consensus 252 ~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK 331 (396)
+++++|++.||.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|+ +|
T Consensus 190 -----------------~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k 248 (256)
T TIGR02280 190 -----------------ALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRS---ADYAEGVTAFL-DK 248 (256)
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHH-cC
Confidence 3378999999999999999999988889999999999999999999 99999999999 66
Q ss_pred CCCCCCCC
Q 016043 332 DNAPKWDP 339 (396)
Q Consensus 332 ~r~P~w~~ 339 (396)
|+|+|++
T Consensus 249 -r~p~~~~ 255 (256)
T TIGR02280 249 -RNPQFTG 255 (256)
T ss_pred -CCCCCCC
Confidence 8999975
No 20
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=9.1e-55 Score=418.89 Aligned_cols=254 Identities=24% Similarity=0.321 Sum_probs=226.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-----C----
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-----S---- 84 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~-----~---- 84 (396)
+..+.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... .
T Consensus 10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 4455689999999999999999999999999999999999999999999999999999999998754211 0
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-
Q 016043 85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG- 163 (396)
Q Consensus 85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G- 163 (396)
......++....+++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 169 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence 0112334445566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHh
Q 016043 164 HLGEFLALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC 242 (396)
Q Consensus 164 ~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 242 (396)
.++.+|+|||++++|+||+++|||+++||+ +++.+.+.
T Consensus 170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~----------------------------------------- 208 (275)
T PLN02664 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVR----------------------------------------- 208 (275)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHH-----------------------------------------
Confidence 999999999999999999999999999995 65654322
Q ss_pred hccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHH
Q 016043 243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE 322 (396)
Q Consensus 243 f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e 322 (396)
+++++|++.||.+++.+|++++.....++.+++..|...+..++.+ +|++|
T Consensus 209 --------------------------~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e 259 (275)
T PLN02664 209 --------------------------LIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVS---DDLNE 259 (275)
T ss_pred --------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC---hhHHH
Confidence 3478999999999999999999988889999999999999888888 99999
Q ss_pred HHHHHHhhcCCCCCCCC
Q 016043 323 GIRALTIEKDNAPKWDP 339 (396)
Q Consensus 323 Gv~A~lidK~r~P~w~~ 339 (396)
|+++|+ +| |+|.|++
T Consensus 260 g~~af~-ek-r~p~~~~ 274 (275)
T PLN02664 260 AVSAQI-QK-RKPVFAK 274 (275)
T ss_pred HHHHHh-cc-CCCCCCC
Confidence 999999 66 8999975
No 21
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.4e-55 Score=414.83 Aligned_cols=252 Identities=22% Similarity=0.273 Sum_probs=223.8
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHH
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (396)
|.++.+++|++||||||+++|+||.+|+.+|.++++++++|++|++|||+|+|++||+|+|++++........ ..++.
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~--~~~~~ 78 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGG--FPFPE 78 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccch--hhhhh
Confidence 5678899999999999999999999999999999999999999999999999999999999998864221111 22222
Q ss_pred HHHHHH-HHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhh
Q 016043 94 RMYWLC-HHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL 171 (396)
Q Consensus 94 ~~~~l~-~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~L 171 (396)
...+.+ ..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.+|+|
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 222222 3578999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHH
Q 016043 172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEI 251 (396)
Q Consensus 172 TG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei 251 (396)
||++++|+||+++||||++||++++.+.+.
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------------- 188 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAI-------------------------------------------------- 188 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHH--------------------------------------------------
Confidence 999999999999999999999887655332
Q ss_pred HHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhc
Q 016043 252 IKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (396)
Q Consensus 252 ~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK 331 (396)
+.+++|++.||.+++.+|++++.....++.++++.|...+..++.+ +|++||+++|+ +|
T Consensus 189 -----------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k 247 (255)
T PRK06563 189 -----------------ELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTS---EDAKEGVQAFL-ER 247 (255)
T ss_pred -----------------HHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-cC
Confidence 3378899999999999999999888889999999999999999999 99999999999 66
Q ss_pred CCCCCCCC
Q 016043 332 DNAPKWDP 339 (396)
Q Consensus 332 ~r~P~w~~ 339 (396)
|+|+|++
T Consensus 248 -r~p~~~~ 254 (255)
T PRK06563 248 -RPARFKG 254 (255)
T ss_pred -CCCCCCC
Confidence 8999975
No 22
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-54 Score=413.58 Aligned_cols=255 Identities=25% Similarity=0.346 Sum_probs=230.3
Q ss_pred CCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchh
Q 016043 9 PDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS 87 (396)
Q Consensus 9 ~~~~~v~~e~-~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~ 87 (396)
...+.|.++. +++|++||||||+++|+||.+|+.+|.++++.+++|++||+|||+|.|++||+|+|++++.... .
T Consensus 4 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~--~-- 79 (261)
T PRK08138 4 TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAG--A-- 79 (261)
T ss_pred CCCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccc--h--
Confidence 3445688887 7899999999999999999999999999999999999999999999999999999999876421 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHH
Q 016043 88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG 166 (396)
Q Consensus 88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a 166 (396)
...+....++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 159 (261)
T PRK08138 80 IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKA 159 (261)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHH
Confidence 1233444567788899999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccC
Q 016043 167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246 (396)
Q Consensus 167 ~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 246 (396)
++|+|||++++|+||+++|||+++||++++.+.+.+
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~-------------------------------------------- 195 (261)
T PRK08138 160 MRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALE-------------------------------------------- 195 (261)
T ss_pred HHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999998877653332
Q ss_pred CHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 016043 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA 326 (396)
Q Consensus 247 tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A 326 (396)
++++|++.+|.+++.+|++++.....++.+++..|.+.+..++.+ +|++||+++
T Consensus 196 -----------------------~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~i~a 249 (261)
T PRK08138 196 -----------------------LAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDS---EDQKEGMDA 249 (261)
T ss_pred -----------------------HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 367888999999999999999888889999999999999999999 999999999
Q ss_pred HHhhcCCCCCCCC
Q 016043 327 LTIEKDNAPKWDP 339 (396)
Q Consensus 327 ~lidK~r~P~w~~ 339 (396)
|+ +| |+|+|.+
T Consensus 250 f~-~k-r~~~~~~ 260 (261)
T PRK08138 250 FL-EK-RKPAYKG 260 (261)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 66 8999975
No 23
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-54 Score=411.96 Aligned_cols=250 Identities=26% Similarity=0.348 Sum_probs=222.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~ 91 (396)
+.|.++.+++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||+|.|++||+|+|++++..... .. .+
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~---~~ 78 (254)
T PRK08252 3 DEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGER-PS---IP 78 (254)
T ss_pred ceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccc-hh---hh
Confidence 458899999999999999999999999999999999999999999999999999999999999999865211 11 11
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHh
Q 016043 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (396)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~ 170 (396)
......+. ...+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus 79 ~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 156 (254)
T PRK08252 79 GRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELA 156 (254)
T ss_pred HHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHH
Confidence 11111221 24699999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHH
Q 016043 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tvee 250 (396)
+||++++|+||+++|||+++||++++.+.+
T Consensus 157 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a-------------------------------------------------- 186 (254)
T PRK08252 157 LTGDMLTAERAHELGLVNRLTEPGQALDAA-------------------------------------------------- 186 (254)
T ss_pred HcCCccCHHHHHHcCCcceecCcchHHHHH--------------------------------------------------
Confidence 999999999999999999999988776533
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016043 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (396)
Q Consensus 251 i~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lid 330 (396)
.+++++|++.||.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|+ +
T Consensus 187 -----------------~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~eg~~af~-~ 245 (254)
T PRK08252 187 -----------------LELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTS---ADAKEGATAFA-E 245 (254)
T ss_pred -----------------HHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-c
Confidence 23478899999999999999999887889999999999999999999 99999999999 6
Q ss_pred cCCCCCCCC
Q 016043 331 KDNAPKWDP 339 (396)
Q Consensus 331 K~r~P~w~~ 339 (396)
| |+|+|..
T Consensus 246 k-r~p~~~~ 253 (254)
T PRK08252 246 K-RAPVWTG 253 (254)
T ss_pred C-CCCCCCC
Confidence 6 8999975
No 24
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.4e-54 Score=412.34 Aligned_cols=247 Identities=24% Similarity=0.369 Sum_probs=225.5
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhHHHHHHHHHH
Q 016043 19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (396)
Q Consensus 19 ~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (396)
+++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||+|.| ++||+|+|++++.... ......++...+.
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~--~~~~~~~~~~~~~ 79 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMS--PSEVQKFVNSLRS 79 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccC--hHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999985 9999999999885421 1222455666677
Q ss_pred HHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhcCCCc
Q 016043 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARL 176 (396)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LTG~~l 176 (396)
++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+.+|+|||+++
T Consensus 80 ~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 80 TFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred HHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 888999999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred cHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHHHHHHH
Q 016043 177 NGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFE 256 (396)
Q Consensus 177 ~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei~~~L~ 256 (396)
+++||+++|||+++||++++.+.+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a-------------------------------------------------------- 183 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKA-------------------------------------------------------- 183 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHH--------------------------------------------------------
Confidence 999999999999999988766532
Q ss_pred HhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhcCCCCC
Q 016043 257 AEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAPK 336 (396)
Q Consensus 257 ~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK~r~P~ 336 (396)
.+.+++|++.||.+++.+|++++.....++.+.+..|.+.+..++.+ +|++||+++|+ +| |+|+
T Consensus 184 -----------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-ek-r~p~ 247 (251)
T PLN02600 184 -----------LELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKT---KDRLEGLAAFA-EK-RKPV 247 (251)
T ss_pred -----------HHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHh-cC-CCCC
Confidence 23478999999999999999999888889999999999999999999 99999999999 77 8999
Q ss_pred CCC
Q 016043 337 WDP 339 (396)
Q Consensus 337 w~~ 339 (396)
|+.
T Consensus 248 ~~~ 250 (251)
T PLN02600 248 YTG 250 (251)
T ss_pred CCC
Confidence 975
No 25
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-54 Score=413.66 Aligned_cols=253 Identities=27% Similarity=0.383 Sum_probs=223.1
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhH
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC 88 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~ 88 (396)
++..|.++.+++|++||||||+++|+||.+|+.+|.++++.+++|++|++|||+|+| ++||+|+|++++.........
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~- 80 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWP- 80 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhh-
Confidence 345689999999999999999999999999999999999999999999999999999 899999999987542211111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
...+ ..+ ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+.
T Consensus 81 ~~~~---~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 156 (259)
T PRK06494 81 ESGF---GGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAM 156 (259)
T ss_pred hHHH---HHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHH
Confidence 1111 222 3345899999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|+|||++++|+||+++||||++||++++.+.+.
T Consensus 157 ~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------- 190 (259)
T PRK06494 157 GMILTGRRVTAREGLELGFVNEVVPAGELLAAAE---------------------------------------------- 190 (259)
T ss_pred HHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887765333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHH--HHHHHHHHhcCCchHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKE--FRLTINILRAIISADIYEGIR 325 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E--~~~~~~~~~~~~~~d~~eGv~ 325 (396)
+.+++|++.||.+++.+|+++++....++.+++..| ...+..++.+ +|++||++
T Consensus 191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~d~~eg~~ 246 (259)
T PRK06494 191 ---------------------RWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRAS---QDYIEGPK 246 (259)
T ss_pred ---------------------HHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcC---ccHHHHHH
Confidence 337889999999999999999998888999999999 5677888888 99999999
Q ss_pred HHHhhcCCCCCCCC
Q 016043 326 ALTIEKDNAPKWDP 339 (396)
Q Consensus 326 A~lidK~r~P~w~~ 339 (396)
+|+ +| |+|+|+.
T Consensus 247 af~-~k-r~p~~~~ 258 (259)
T PRK06494 247 AFA-EK-RPPRWKG 258 (259)
T ss_pred HHH-cc-CCCCCCC
Confidence 999 66 8999975
No 26
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-54 Score=414.22 Aligned_cols=256 Identities=23% Similarity=0.348 Sum_probs=228.6
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCC----ch
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISS-KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS----KD 86 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~-~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~----~~ 86 (396)
+.|.++.+++|++||||||+++|+||. +|+.+|.++++.++.|++|++|||+|.|++||+|+|++++...... ..
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (266)
T PRK09245 3 DFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPA 82 (266)
T ss_pred CceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccch
Confidence 358999999999999999999999995 9999999999999999999999999999999999999998542110 11
Q ss_pred hHHH-HHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-H
Q 016043 87 SCLE-VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H 164 (396)
Q Consensus 87 ~~~~-~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~ 164 (396)
.... +......++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 162 (266)
T PRK09245 83 DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMA 162 (266)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHH
Confidence 1112 2233456778899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhc
Q 016043 165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244 (396)
Q Consensus 165 ~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~ 244 (396)
.+.+|++||++++|+||+++|||+++||++++.+.+.
T Consensus 163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 199 (266)
T PRK09245 163 RAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAAR------------------------------------------- 199 (266)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999999887765333
Q ss_pred cCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 016043 245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI 324 (396)
Q Consensus 245 ~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv 324 (396)
+++++|++.||.+++.+|++++.....++.+.+..|......++.+ +|++||+
T Consensus 200 ------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~eg~ 252 (266)
T PRK09245 200 ------------------------ALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHT---ADHREAV 252 (266)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcC---HhHHHHH
Confidence 3378999999999999999999887888999999999999999999 9999999
Q ss_pred HHHHhhcCCCCCCCC
Q 016043 325 RALTIEKDNAPKWDP 339 (396)
Q Consensus 325 ~A~lidK~r~P~w~~ 339 (396)
++|+ +| |+|.|+.
T Consensus 253 ~af~-~k-r~p~~~~ 265 (266)
T PRK09245 253 DAFL-EK-RPPVFTG 265 (266)
T ss_pred HHHH-cC-CCCCCCC
Confidence 9999 66 8999974
No 27
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-54 Score=415.26 Aligned_cols=256 Identities=20% Similarity=0.252 Sum_probs=231.0
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC--CchhHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN--SKDSCL 89 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~--~~~~~~ 89 (396)
..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... ......
T Consensus 17 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 17 RHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred cceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 368899999999999999999999999999999999999999999999999999999999999998753211 111223
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccC-CchHHHHHhhccH-HHHH
Q 016043 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHT-DCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~P-d~G~s~~L~rl~G-~~a~ 167 (396)
.+.....+++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+|++| ..+.
T Consensus 97 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~ 176 (277)
T PRK08258 97 AFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRAS 176 (277)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHH
Confidence 4555556788899999999999999999999999999999999999999999999999995 8899999999999 8999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 177 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 210 (277)
T PRK08258 177 ELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQ---------------------------------------------- 210 (277)
T ss_pred HHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887765333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+++++|++.||.+++.+|++++.....++++.+..|...+..++.+ +|++||+++|
T Consensus 211 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~eg~~af 266 (277)
T PRK08258 211 ---------------------ALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQT---EDFRRAYEAF 266 (277)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC---chHHHHHHHH
Confidence 3378999999999999999999988889999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCC
Q 016043 328 TIEKDNAPKWDP 339 (396)
Q Consensus 328 lidK~r~P~w~~ 339 (396)
+ +| |+|+|++
T Consensus 267 ~-ek-r~p~~~~ 276 (277)
T PRK08258 267 V-AK-RKPVFEG 276 (277)
T ss_pred h-cC-CCCCCCC
Confidence 9 66 8999975
No 28
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-54 Score=412.48 Aligned_cols=256 Identities=26% Similarity=0.331 Sum_probs=228.1
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCC-chhHH
Q 016043 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS-KDSCL 89 (396)
Q Consensus 11 ~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~-~~~~~ 89 (396)
++.|.++.+++|++||||||+++|+||.+|+.+|.+++++++ |+++++|||+|+|++||+|+|++++...... .....
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG 81 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence 456899999999999999999999999999999999999999 9999999999999999999999987542111 11111
Q ss_pred HHHH-HHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 90 EVVY-RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 90 ~~~~-~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
..+. ....+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~ 161 (262)
T PRK08140 82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL 161 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence 1222 2334677899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 195 (262)
T PRK08140 162 GLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQ---------------------------------------------- 195 (262)
T ss_pred HHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887765333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+++++|++.||.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|
T Consensus 196 ---------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af 251 (262)
T PRK08140 196 ---------------------QLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGRS---ADYAEGVSAF 251 (262)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence 3378999999999999999999888889999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCC
Q 016043 328 TIEKDNAPKWDP 339 (396)
Q Consensus 328 lidK~r~P~w~~ 339 (396)
+ +| |+|+|++
T Consensus 252 ~-~k-r~p~~~~ 261 (262)
T PRK08140 252 L-EK-RAPRFTG 261 (262)
T ss_pred h-cC-CCCCCCC
Confidence 9 66 8999975
No 29
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-54 Score=412.77 Aligned_cols=258 Identities=21% Similarity=0.267 Sum_probs=230.9
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCC-ceEEEEEcCCCCcccCCCchhhccCCCCc---
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQ-AKLVIVKGVGRAFSAGGDLKMFYDGRNSK--- 85 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~-v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~--- 85 (396)
.++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++ |++|||+|.|++||+|+|++++.......
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 46679999999999999999999999999999999999999998764 99999999999999999999986422110
Q ss_pred -hhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-
Q 016043 86 -DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG- 163 (396)
Q Consensus 86 -~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G- 163 (396)
.....+....+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~ 161 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK 161 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence 111334444567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhh
Q 016043 164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243 (396)
Q Consensus 164 ~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 243 (396)
..+.+|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------ 199 (266)
T PRK05981 162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAM------------------------------------------ 199 (266)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHH------------------------------------------
Confidence 89999999999999999999999999999887765333
Q ss_pred ccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 016043 244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG 323 (396)
Q Consensus 244 ~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG 323 (396)
+++++|++.||.+++.+|++++.....++.+.+..|...+..++.+ +|++||
T Consensus 200 -------------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~e~ 251 (266)
T PRK05981 200 -------------------------KLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKT---EDFKEG 251 (266)
T ss_pred -------------------------HHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcC---hhHHHH
Confidence 3378899999999999999999887889999999999999999999 999999
Q ss_pred HHHHHhhcCCCCCCCC
Q 016043 324 IRALTIEKDNAPKWDP 339 (396)
Q Consensus 324 v~A~lidK~r~P~w~~ 339 (396)
+++|+ +| |+|+|+.
T Consensus 252 ~~af~-~k-r~~~~~~ 265 (266)
T PRK05981 252 VGAFL-QK-RPAQFKG 265 (266)
T ss_pred HHHHh-cC-CCCCCCC
Confidence 99999 66 8999975
No 30
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-54 Score=411.81 Aligned_cols=258 Identities=26% Similarity=0.359 Sum_probs=228.1
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-CchhH
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSC 88 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~-~~~~~ 88 (396)
+++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|+|++||+|+|++++..... .....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (262)
T PRK05995 2 MYETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDEN 81 (262)
T ss_pred CCceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999998754211 11111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
...+...++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|+++ |+|++| ..+.
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~-l~~~vg~~~a~ 160 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISPY-VIRAMGERAAR 160 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHHH-HHHHhCHHHHH
Confidence 22234556788899999999999999999999999999999999999999999999999999988765 889899 9999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|+|||++++|+||+++|||+++||++++.+.+.+
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~--------------------------------------------- 195 (262)
T PRK05995 161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDE--------------------------------------------- 195 (262)
T ss_pred HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999998877654333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHH-HHHHHHHHHHHHhcCCchHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC-LKKEFRLTINILRAIISADIYEGIRA 326 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~-l~~E~~~~~~~~~~~~~~d~~eGv~A 326 (396)
++++|++.||.+++.+|++++.....++.+. +..|...+..++.+ +|++||+++
T Consensus 196 ----------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~~a 250 (262)
T PRK05995 196 ----------------------LLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIALIRAT---EEAREGVAA 250 (262)
T ss_pred ----------------------HHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 3788999999999999999998877889888 88888888888889 999999999
Q ss_pred HHhhcCCCCCCCCC
Q 016043 327 LTIEKDNAPKWDPP 340 (396)
Q Consensus 327 ~lidK~r~P~w~~~ 340 (396)
|+ +| |+|+|+++
T Consensus 251 f~-~k-r~p~~~~~ 262 (262)
T PRK05995 251 FL-EK-RKPAWRGR 262 (262)
T ss_pred Hh-cC-CCCCCCCC
Confidence 99 66 89999763
No 31
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-54 Score=410.92 Aligned_cols=255 Identities=24% Similarity=0.332 Sum_probs=231.7
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-CchhHHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSCLE 90 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~-~~~~~~~ 90 (396)
.+|.++.+++|++||||||+++|+||.+|+.+|.++++.+++|++||+|||+|.|++||+|+|++++..... .......
T Consensus 3 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 82 (260)
T PRK07511 3 AELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAA 82 (260)
T ss_pred CeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHH
Confidence 348889999999999999999999999999999999999999999999999999999999999999865221 1122245
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHH
Q 016043 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (396)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L 169 (396)
++...++++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus 83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l 162 (260)
T PRK07511 83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATEL 162 (260)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHH
Confidence 6667788889999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHH
Q 016043 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA 249 (396)
Q Consensus 170 ~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tve 249 (396)
+|||++++++||+++|||+++||++++.+.+.
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~------------------------------------------------ 194 (260)
T PRK07511 163 LLEGKPISAERLHALGVVNRLAEPGQALAEAL------------------------------------------------ 194 (260)
T ss_pred HHhCCCCCHHHHHHcCCccEeeCchHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887654322
Q ss_pred HHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016043 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI 329 (396)
Q Consensus 250 ei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~li 329 (396)
+.+++|+++||.+++.+|+.++.+...++.+++..|...+..++.+ +|+++|+++|+
T Consensus 195 -------------------~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~i~~f~- 251 (260)
T PRK07511 195 -------------------ALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHH---ADALEGIAAFL- 251 (260)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-
Confidence 3377899999999999999999988889999999999999999999 99999999999
Q ss_pred hcCCCCCCC
Q 016043 330 EKDNAPKWD 338 (396)
Q Consensus 330 dK~r~P~w~ 338 (396)
+| |+|+|+
T Consensus 252 ~~-r~~~~~ 259 (260)
T PRK07511 252 EK-RAPDYK 259 (260)
T ss_pred cc-CCCCCC
Confidence 66 799995
No 32
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-54 Score=410.94 Aligned_cols=256 Identities=23% Similarity=0.339 Sum_probs=231.9
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhH
Q 016043 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC 88 (396)
Q Consensus 9 ~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~ 88 (396)
+.+..|.++.+++|++||||||+++|++|.+|+.+|.++++.+ .|+++++|||+|.|++||+|+|++++..... ....
T Consensus 3 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~-~~~~ 80 (260)
T PRK07659 3 SKMESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSND-ESKF 80 (260)
T ss_pred CCCceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccC-chhH
Confidence 3446799999999999999999999999999999999999999 5889999999999999999999999864222 2223
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
..++...++++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~ 160 (260)
T PRK07659 81 DGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAK 160 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHH
Confidence 556667778888999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|++||+.++|+||+++|||+++| ++++.+.+.
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~---------------------------------------------- 193 (260)
T PRK07659 161 QIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAK---------------------------------------------- 193 (260)
T ss_pred HHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHH----------------------------------------------
Confidence 999999999999999999999999 666654333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+.+++|++.||.+++.+|++++.....++++.+..|...+..++.+ +|++||+++|
T Consensus 194 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~egi~af 249 (260)
T PRK07659 194 ---------------------QKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQT---ADHKEGIRAF 249 (260)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---HhHHHHHHHH
Confidence 3378899999999999999999888889999999999999999999 9999999999
Q ss_pred HhhcCCCCCCCC
Q 016043 328 TIEKDNAPKWDP 339 (396)
Q Consensus 328 lidK~r~P~w~~ 339 (396)
+ +| |+|+|++
T Consensus 250 ~-~k-r~p~~~~ 259 (260)
T PRK07659 250 L-EK-RLPVFKG 259 (260)
T ss_pred h-cC-CCCCCCC
Confidence 9 66 8999975
No 33
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=8.1e-54 Score=408.52 Aligned_cols=253 Identities=30% Similarity=0.447 Sum_probs=227.6
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHH
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL 89 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~ 89 (396)
.+..|.++..++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|+|++||||+||+.+.. ........
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~-~~~~~~~~ 81 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS-PEDGNAAE 81 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc-ccchhHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999975 11111113
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHH
Q 016043 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (396)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~ 168 (396)
.++...+.++..|.+++|||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++| ..+.+
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~ 161 (257)
T COG1024 82 NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKE 161 (257)
T ss_pred HHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHH
Confidence 67788888999999999999999999999999999999999999999999999999999997799999999999 89999
Q ss_pred HhhcCCCccHHHHHHcCccceecCC-CChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 169 LALTGARLNGKELVAAGLATHFVPS-EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
|++||+.++++||+++|||+++|+. +++.+.+.++
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~-------------------------------------------- 197 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALEL-------------------------------------------- 197 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHH--------------------------------------------
Confidence 9999999999999999999999985 4665533333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+++++. +|.+++.+|+.++.....++++.+..|...+...+.+ +|++||+++|
T Consensus 198 -----------------------a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~d~~eg~~a~ 250 (257)
T COG1024 198 -----------------------ARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLFSS---EDFREGVRAF 250 (257)
T ss_pred -----------------------HHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence 555655 9999999999999997767999999999999987788 9999999999
Q ss_pred HhhcCCCCCC
Q 016043 328 TIEKDNAPKW 337 (396)
Q Consensus 328 lidK~r~P~w 337 (396)
+ + |+|.|
T Consensus 251 ~-~--r~p~~ 257 (257)
T COG1024 251 L-E--RKPVF 257 (257)
T ss_pred H-c--cCCCC
Confidence 9 3 89988
No 34
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=8.8e-54 Score=411.91 Aligned_cols=257 Identities=23% Similarity=0.350 Sum_probs=224.7
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-Cch-
Q 016043 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKD- 86 (396)
Q Consensus 9 ~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~-~~~- 86 (396)
..+..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... ...
T Consensus 5 ~~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 84 (275)
T PRK09120 5 NRWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEI 84 (275)
T ss_pred cccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhH
Confidence 346779999999999999999999999999999999999999999999999999999999999999998754221 111
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HH
Q 016043 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (396)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~ 165 (396)
....+.+..+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 85 LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 12333444567788899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhcc
Q 016043 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (396)
Q Consensus 166 a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~ 245 (396)
+.+|+|||++++|+||+++|||+++||++++.+.+.+
T Consensus 165 a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------- 201 (275)
T PRK09120 165 ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRE------------------------------------------- 201 (275)
T ss_pred HHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999999887764433
Q ss_pred CCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHH--HHHHHhcCCch-HHHH
Q 016043 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRL--TINILRAIISA-DIYE 322 (396)
Q Consensus 246 ~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~--~~~~~~~~~~~-d~~e 322 (396)
++++|++.||.+++.+|++++.....++.+.+..|... ...++.+ + |++|
T Consensus 202 ------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~d~~e 254 (275)
T PRK09120 202 ------------------------LAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDP---EGGREE 254 (275)
T ss_pred ------------------------HHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCC---HHHHHH
Confidence 37899999999999999999998888999999888654 4445677 8 8999
Q ss_pred HHHHHHhhcCCCC
Q 016043 323 GIRALTIEKDNAP 335 (396)
Q Consensus 323 Gv~A~lidK~r~P 335 (396)
|+++|+..|+++|
T Consensus 255 g~~afl~kr~~~~ 267 (275)
T PRK09120 255 GLKQFLDDKSYKP 267 (275)
T ss_pred HHHHHHhcccCCc
Confidence 9999994333344
No 35
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-54 Score=410.37 Aligned_cols=256 Identities=20% Similarity=0.330 Sum_probs=225.5
Q ss_pred CCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-CchhH
Q 016043 11 EQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDSC 88 (396)
Q Consensus 11 ~~~v~~e~~-~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~-~~~~~ 88 (396)
++.|.++.+ ++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATR 82 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhH
Confidence 456888885 6899999999999999999999999999999999999999999999999999999998754211 11111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
..++...+.++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++| +| .+++
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a~ 161 (262)
T PRK07468 83 IEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANAR 161 (262)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHHH
Confidence 233444566788999999999999999999999999999999999999999999999999999999987766 67 9999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|+|||++++|+||+++|||+++||.+++.+.+.
T Consensus 162 ~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~---------------------------------------------- 195 (262)
T PRK07468 162 RVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVE---------------------------------------------- 195 (262)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877655333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+++++|++.||.+++.+|++++......+.+++..|...+..++.+ +|++||+++|
T Consensus 196 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~e~~~af 251 (262)
T PRK07468 196 ---------------------AEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWET---EEAREGIAAF 251 (262)
T ss_pred ---------------------HHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 3378899999999999999999876667899999999999999999 9999999999
Q ss_pred HhhcCCCCCCCC
Q 016043 328 TIEKDNAPKWDP 339 (396)
Q Consensus 328 lidK~r~P~w~~ 339 (396)
+ +| |+|+|+.
T Consensus 252 ~-~k-r~~~~~~ 261 (262)
T PRK07468 252 F-DK-RAPAWRG 261 (262)
T ss_pred H-cC-CCCCCCC
Confidence 9 66 8999964
No 36
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-53 Score=407.55 Aligned_cols=254 Identities=25% Similarity=0.336 Sum_probs=227.4
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHH
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL 89 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~ 89 (396)
+++.|.++.+++|++||||||+ .|+||.+|+.+|.++++.+++|+++++|||+|.|++||+|+|++++...........
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 80 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLR 80 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHH
Confidence 4567899999999999999998 599999999999999999999999999999999999999999998754211112223
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHH
Q 016043 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (396)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~ 168 (396)
.+....+++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++++|+|++| ..+.+
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~ 157 (257)
T PRK06495 81 AHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRR 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHH
Confidence 445556678888999999999999999999999999999999999999999999999996 56788999999 89999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tv 248 (396)
|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~----------------------------------------------- 190 (257)
T PRK06495 158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAM----------------------------------------------- 190 (257)
T ss_pred HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999887765333
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 249 eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
+.+++|++.||.+++.+|++++.....++.+++..|...+..++.+ +|++||+++|+
T Consensus 191 --------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~egi~af~ 247 (257)
T PRK06495 191 --------------------EIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLAKT---EDAKEAQRAFL 247 (257)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hHHHHHHHHHh
Confidence 3378999999999999999999888889999999999999999999 99999999999
Q ss_pred hhcCCCCCCCC
Q 016043 329 IEKDNAPKWDP 339 (396)
Q Consensus 329 idK~r~P~w~~ 339 (396)
+| |+|+|+.
T Consensus 248 -~k-r~p~~~~ 256 (257)
T PRK06495 248 -EK-RPPVFKG 256 (257)
T ss_pred -cc-CCCCCCC
Confidence 66 8999975
No 37
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=8e-54 Score=410.19 Aligned_cols=257 Identities=23% Similarity=0.329 Sum_probs=223.6
Q ss_pred CCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-Cchh
Q 016043 10 DEQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN-SKDS 87 (396)
Q Consensus 10 ~~~~v~~e~~-~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~-~~~~ 87 (396)
.++.|.++.+ ++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.|++||+|+|++++..... ....
T Consensus 3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 82 (265)
T PRK05674 3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNT 82 (265)
T ss_pred CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchh
Confidence 4677999985 7899999999999999999999999999999999999999999999999999999998754211 0011
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHH
Q 016043 88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG 166 (396)
Q Consensus 88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a 166 (396)
........+++.+.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |+|++| .++
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~~-l~~~vG~~~a 161 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISPF-VVKAIGERAA 161 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHHH-HHHHhCHHHH
Confidence 112233456788889999999999999999999999999999999999999999999999999987764 888899 999
Q ss_pred HHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccC
Q 016043 167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246 (396)
Q Consensus 167 ~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 246 (396)
++|+|||++++|+||+++|||+++||.+++.+.+.
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------------- 196 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAAELEAQVE--------------------------------------------- 196 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999877665333
Q ss_pred CHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHH-HHHHHHHHHhcCCchHHHHHHH
Q 016043 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKK-EFRLTINILRAIISADIYEGIR 325 (396)
Q Consensus 247 tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~-E~~~~~~~~~~~~~~d~~eGv~ 325 (396)
+.+++|++.||.+++.+|++++.....++.+.+.. +...+..++.+ +|++||++
T Consensus 197 ----------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~e~~~ 251 (265)
T PRK05674 197 ----------------------AWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVS---AEGQEGLR 251 (265)
T ss_pred ----------------------HHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence 33788999999999999999999888889888875 44667777888 99999999
Q ss_pred HHHhhcCCCCCCCC
Q 016043 326 ALTIEKDNAPKWDP 339 (396)
Q Consensus 326 A~lidK~r~P~w~~ 339 (396)
+|+ +| |+|+|+.
T Consensus 252 af~-~k-r~p~~~~ 263 (265)
T PRK05674 252 AFL-EK-RTPAWQT 263 (265)
T ss_pred HHH-cc-CCCCCCC
Confidence 999 66 8999974
No 38
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-53 Score=407.47 Aligned_cols=254 Identities=29% Similarity=0.392 Sum_probs=232.3
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHH
Q 016043 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLE 90 (396)
Q Consensus 11 ~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~ 90 (396)
...|.++.+++|++|+||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .. ..
T Consensus 4 ~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~~--~~ 80 (259)
T PRK06688 4 VTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPP-KP--PD 80 (259)
T ss_pred CCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCc-ch--HH
Confidence 4568999999999999999999999999999999999999999999999999999999999999999865322 11 34
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHH
Q 016043 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (396)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L 169 (396)
++...++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.+|
T Consensus 81 ~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l 160 (259)
T PRK06688 81 ELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEM 160 (259)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHH
Confidence 5566677888999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHH
Q 016043 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA 249 (396)
Q Consensus 170 ~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tve 249 (396)
++||++++++||+++|||++++|++++.+.+.
T Consensus 161 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~------------------------------------------------ 192 (259)
T PRK06688 161 LLLGEPLSAEEALRIGLVNRVVPAAELDAEAD------------------------------------------------ 192 (259)
T ss_pred HHhCCccCHHHHHHcCCcceecCHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999877665333
Q ss_pred HHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016043 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI 329 (396)
Q Consensus 250 ei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~li 329 (396)
+++++|++.||.+++.+|+++++....++++++..|.+.+..++.+ +|+++|+++|+
T Consensus 193 -------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~af~- 249 (259)
T PRK06688 193 -------------------AQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRT---PDFREGATAFI- 249 (259)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHH-
Confidence 3377899999999999999999988889999999999999999999 99999999999
Q ss_pred hcCCCCCCCC
Q 016043 330 EKDNAPKWDP 339 (396)
Q Consensus 330 dK~r~P~w~~ 339 (396)
+| |+|+|+.
T Consensus 250 ~~-~~p~~~~ 258 (259)
T PRK06688 250 EK-RKPDFTG 258 (259)
T ss_pred cC-CCCCCCC
Confidence 66 8999974
No 39
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-53 Score=408.19 Aligned_cols=256 Identities=22% Similarity=0.293 Sum_probs=222.5
Q ss_pred CCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCch
Q 016043 8 NPDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD 86 (396)
Q Consensus 8 ~~~~~~v~~e~-~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~ 86 (396)
...++.|.++. .++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++........
T Consensus 7 ~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 86 (268)
T PRK07327 7 YADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFE 86 (268)
T ss_pred CCCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHH
Confidence 45567899998 58999999999999999999999999999999999999999999999999999999998754222112
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HH
Q 016043 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (396)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~ 165 (396)
....++...+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.|++++|+|++| .+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK 166 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence 12345555677888999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhcc
Q 016043 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (396)
Q Consensus 166 a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~ 245 (396)
+.+|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 202 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKAL-------------------------------------------- 202 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887765333
Q ss_pred CCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhh---cCHHHHHHHHHHHHHHHHhcCCchHHHH
Q 016043 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE---QSLAECLKKEFRLTINILRAIISADIYE 322 (396)
Q Consensus 246 ~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~---~~l~~~l~~E~~~~~~~~~~~~~~d~~e 322 (396)
+++++|++.||.+++.+|++++.... ..+++.+..|. .++.+ +|++|
T Consensus 203 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~----~~~~~---~d~~e 252 (268)
T PRK07327 203 -----------------------EVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEF----MGFSG---PDVRE 252 (268)
T ss_pred -----------------------HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----HHccC---hhHHH
Confidence 33789999999999999999996532 24555555543 35667 99999
Q ss_pred HHHHHHhhcCCCCCCCC
Q 016043 323 GIRALTIEKDNAPKWDP 339 (396)
Q Consensus 323 Gv~A~lidK~r~P~w~~ 339 (396)
|+++|+ +| |+|+|++
T Consensus 253 g~~af~-ek-r~p~~~~ 267 (268)
T PRK07327 253 GLASLR-EK-RAPDFPG 267 (268)
T ss_pred HHHHHH-hc-CCCCCCC
Confidence 999999 66 8999975
No 40
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-53 Score=409.93 Aligned_cols=260 Identities=24% Similarity=0.342 Sum_probs=224.1
Q ss_pred CCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC----
Q 016043 9 PDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN---- 83 (396)
Q Consensus 9 ~~~~~v~~e~-~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~---- 83 (396)
+.++.|.++. +++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||+|.|++||+|+|++++.....
T Consensus 6 ~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 85 (276)
T PRK05864 6 STMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGL 85 (276)
T ss_pred CCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccc
Confidence 3455688887 78999999999999999999999999999999999999999999999999999999998743211
Q ss_pred -CchhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccC-CchHHHHHhhc
Q 016043 84 -SKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHT-DCGFSFIHSRL 161 (396)
Q Consensus 84 -~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~P-d~G~s~~L~rl 161 (396)
.......++....+++..|.+++||+||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~ 165 (276)
T PRK05864 86 TRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRA 165 (276)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhh
Confidence 0111123344456677889999999999999999999999999999999999999999999999997 78999999999
Q ss_pred cH-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHH
Q 016043 162 PG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIID 240 (396)
Q Consensus 162 ~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 240 (396)
+| ..+.+|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 166 vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~--------------------------------------- 206 (276)
T PRK05864 166 IGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCY--------------------------------------- 206 (276)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHH---------------------------------------
Confidence 99 89999999999999999999999999999887765333
Q ss_pred HhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhc-CHHHHHHHHHHHHH-HHHhcCCch
Q 016043 241 ECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQ-SLAECLKKEFRLTI-NILRAIISA 318 (396)
Q Consensus 241 ~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~-~l~~~l~~E~~~~~-~~~~~~~~~ 318 (396)
+.+++|++.||.+++.+|++++..... ++.+++..|..... ..+.+ +
T Consensus 207 ----------------------------~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~---~ 255 (276)
T PRK05864 207 ----------------------------AIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLT---A 255 (276)
T ss_pred ----------------------------HHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccC---h
Confidence 337889999999999999999987664 79999888875432 34567 9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCC
Q 016043 319 DIYEGIRALTIEKDNAPKWDPP 340 (396)
Q Consensus 319 d~~eGv~A~lidK~r~P~w~~~ 340 (396)
|++||+++|+ +| |+|+|++.
T Consensus 256 d~~e~~~af~-~k-r~p~~~~~ 275 (276)
T PRK05864 256 NFEEAVAARA-EK-RPPVFTDD 275 (276)
T ss_pred hHHHHHHHHh-cc-CCCCCCCC
Confidence 9999999999 66 89999864
No 41
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-53 Score=409.70 Aligned_cols=259 Identities=25% Similarity=0.345 Sum_probs=228.1
Q ss_pred CCCCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCch-
Q 016043 9 PDEQVVLGEEIG-NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD- 86 (396)
Q Consensus 9 ~~~~~v~~e~~~-~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~- 86 (396)
+.++.|.++.++ +|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~ 81 (272)
T PRK06210 2 MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGR 81 (272)
T ss_pred CCcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccc
Confidence 456779999998 999999999999999999999999999999999999999999999999999999998764211110
Q ss_pred ---hHHHHH----HHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHh
Q 016043 87 ---SCLEVV----YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHS 159 (396)
Q Consensus 87 ---~~~~~~----~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~ 159 (396)
....+. ....+++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 161 (272)
T PRK06210 82 RDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILP 161 (272)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhH
Confidence 001121 1224556789999999999999999999999999999999999999999999999999999999999
Q ss_pred hccH-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHH
Q 016043 160 RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSI 238 (396)
Q Consensus 160 rl~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (396)
|++| ..+++|+|||++++|+||+++||||++||++++.+.+.
T Consensus 162 ~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------- 204 (272)
T PRK06210 162 RLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL------------------------------------- 204 (272)
T ss_pred hhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH-------------------------------------
Confidence 9999 89999999999999999999999999999877654332
Q ss_pred HHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhcc-ChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCc
Q 016043 239 IDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKS-SPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIIS 317 (396)
Q Consensus 239 I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~-sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~ 317 (396)
+.+++|++. ||.+++.+|+++++....++.+.+..|...+..++.+
T Consensus 205 ------------------------------~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~--- 251 (272)
T PRK06210 205 ------------------------------AYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQR--- 251 (272)
T ss_pred ------------------------------HHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcC---
Confidence 337788875 9999999999999988889999999999999999998
Q ss_pred hHHHHHHHHHHhhcCCCCCCCC
Q 016043 318 ADIYEGIRALTIEKDNAPKWDP 339 (396)
Q Consensus 318 ~d~~eGv~A~lidK~r~P~w~~ 339 (396)
+|++||+++|+ +| |+|.|..
T Consensus 252 ~~~~egi~af~-~k-r~p~~~~ 271 (272)
T PRK06210 252 PDFIEGVASFL-EK-RPPRFPG 271 (272)
T ss_pred ccHHHHHHHHh-cc-CCCCCCC
Confidence 99999999999 66 8999974
No 42
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.8e-53 Score=406.55 Aligned_cols=254 Identities=21% Similarity=0.280 Sum_probs=220.2
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhHH
Q 016043 12 QVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCL 89 (396)
Q Consensus 12 ~~v~~e~-~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~~ 89 (396)
..|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++...........
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 4578888 899999999999999999999999999999999999999999999999 89999999998643111111101
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHH
Q 016043 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (396)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~ 168 (396)
. ......+...|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| .++.+
T Consensus 82 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 82 H-RLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 1 112345777899999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tv 248 (396)
|++||++++|+||+++|||+++||++++.+.+.
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------------- 193 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETV----------------------------------------------- 193 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999877665333
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 249 eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
+++++|++.||.+++.+|++++.... .....+..|.+.+..++.+ +|++||+++|+
T Consensus 194 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~---~d~~egi~af~ 249 (259)
T TIGR01929 194 --------------------RWCREILQKSPMAIRMLKAALNADCD-GQAGLQELAGNATMLFYMT---EEGQEGRNAFL 249 (259)
T ss_pred --------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHhcC---ccHHHHHHHHh
Confidence 34789999999999999999997644 3455666677888888888 99999999999
Q ss_pred hhcCCCCCCCC
Q 016043 329 IEKDNAPKWDP 339 (396)
Q Consensus 329 idK~r~P~w~~ 339 (396)
+| |+|+|+.
T Consensus 250 -~k-r~p~~~~ 258 (259)
T TIGR01929 250 -EK-RQPDFSK 258 (259)
T ss_pred -cc-CCCCCCC
Confidence 66 8999974
No 43
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=2.4e-53 Score=405.00 Aligned_cols=251 Identities=22% Similarity=0.306 Sum_probs=217.2
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhHHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLE 90 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~~~ 90 (396)
+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|+| ++||+|+|++++..... .. ..
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~--~~ 78 (256)
T TIGR03210 2 EDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GR--GT 78 (256)
T ss_pred CceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-ch--hH
Confidence 4688999999999999999999999999999999999999999999999999999 89999999998743211 11 12
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHH
Q 016043 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (396)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L 169 (396)
+......++..|.+++||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++| ..+++|
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~l 158 (256)
T TIGR03210 79 IGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREI 158 (256)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHH
Confidence 2233456788899999999999999999999999999999999999999999999999988888999999999 899999
Q ss_pred hhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHH
Q 016043 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA 249 (396)
Q Consensus 170 ~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tve 249 (396)
++||++++|+||+++||||++||++++.+.+.
T Consensus 159 ll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 190 (256)
T TIGR03210 159 WYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQ------------------------------------------------ 190 (256)
T ss_pred HHhCCCcCHHHHHHcCCceeeeCHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887765333
Q ss_pred HHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCH-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSL-AECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 250 ei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l-~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
+++++|++.||.+++.+|++++....... .+. .|...+..++.+ +|++||+++|+
T Consensus 191 -------------------~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~--~~~~~~~~~~~~---~d~~e~~~af~ 246 (256)
T TIGR03210 191 -------------------KWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAG--MGMYALKLYYDT---AESREGVKAFQ 246 (256)
T ss_pred -------------------HHHHHHHhCCHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHccC---hhHHHHHHHHh
Confidence 33789999999999999999997644321 122 244566677788 99999999999
Q ss_pred hhcCCCCCCCC
Q 016043 329 IEKDNAPKWDP 339 (396)
Q Consensus 329 idK~r~P~w~~ 339 (396)
+| |+|+|++
T Consensus 247 -~k-r~p~~~~ 255 (256)
T TIGR03210 247 -EK-RKPEFRK 255 (256)
T ss_pred -cc-CCCCCCC
Confidence 66 8999974
No 44
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=4e-53 Score=404.60 Aligned_cols=251 Identities=25% Similarity=0.403 Sum_probs=223.5
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhHHHH
Q 016043 13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLEV 91 (396)
Q Consensus 13 ~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~~~~ 91 (396)
.|.++++++|++||||||+ .|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++..... .. ..+
T Consensus 4 ~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~--~~~ 79 (261)
T PRK03580 4 SLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEA-PD--ADF 79 (261)
T ss_pred eEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCc-ch--hhh
Confidence 4889999999999999996 5999999999999999999999999999999999 89999999999764221 11 122
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHh
Q 016043 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (396)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~ 170 (396)
....+.++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus 80 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~ 159 (261)
T PRK03580 80 GPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMV 159 (261)
T ss_pred hhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHH
Confidence 222345667889999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHH
Q 016043 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tvee 250 (396)
|||++++|+||+++|||+++||++++.+.+.+
T Consensus 160 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------------ 191 (261)
T PRK03580 160 MTGRRMDAEEALRWGIVNRVVPQAELMDRARE------------------------------------------------ 191 (261)
T ss_pred HhCCccCHHHHHHcCCCcEecCHhHHHHHHHH------------------------------------------------
Confidence 99999999999999999999998887664333
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHH----HHHHHHhcCCchHHHHHHHH
Q 016043 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFR----LTINILRAIISADIYEGIRA 326 (396)
Q Consensus 251 i~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~----~~~~~~~~~~~~d~~eGv~A 326 (396)
.+++|++.+|.+++.+|++++.....++.+++..|.. .+..++.+ +|++||+++
T Consensus 192 -------------------~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~d~~e~~~a 249 (261)
T PRK03580 192 -------------------LAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHS---EDALEGPRA 249 (261)
T ss_pred -------------------HHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcC---ccHHHHHHH
Confidence 3788999999999999999998888899999998874 66778888 999999999
Q ss_pred HHhhcCCCCCCCC
Q 016043 327 LTIEKDNAPKWDP 339 (396)
Q Consensus 327 ~lidK~r~P~w~~ 339 (396)
|+ +| |+|+|+.
T Consensus 250 f~-ek-r~~~~~~ 260 (261)
T PRK03580 250 FA-EK-RDPVWKG 260 (261)
T ss_pred Hh-cC-CCCCCCC
Confidence 99 66 8999975
No 45
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-53 Score=400.81 Aligned_cols=246 Identities=22% Similarity=0.303 Sum_probs=221.9
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHH
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (396)
|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++.... ...+..
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-----~~~~~~ 76 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF-----AIDLRE 76 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh-----HHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999875321 123444
Q ss_pred HHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhcC
Q 016043 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTG 173 (396)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG 173 (396)
..+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+.+|+|||
T Consensus 77 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll~g 156 (248)
T PRK06072 77 TFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLG 156 (248)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHHhC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHHHH
Q 016043 174 ARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIK 253 (396)
Q Consensus 174 ~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei~~ 253 (396)
++++|+||+++|||+++ +++.+.
T Consensus 157 ~~~~a~eA~~~Glv~~~---~~~~~~------------------------------------------------------ 179 (248)
T PRK06072 157 GEFTAEEAERWGLLKIS---EDPLSD------------------------------------------------------ 179 (248)
T ss_pred CccCHHHHHHCCCcccc---chHHHH------------------------------------------------------
Confidence 99999999999999953 233221
Q ss_pred HHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhcCC
Q 016043 254 SFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDN 333 (396)
Q Consensus 254 ~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK~r 333 (396)
|.+++++|++.||.+++.+|++++.....++++.+..|.+.+..++.+ +|++||+++|+ +| |
T Consensus 180 -------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k-r 241 (248)
T PRK06072 180 -------------AEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKT---EDFKEGISSFK-EK-R 241 (248)
T ss_pred -------------HHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCC---hhHHHHHHHHh-cC-C
Confidence 234478999999999999999999887889999999999999999999 99999999999 66 8
Q ss_pred CCCCCC
Q 016043 334 APKWDP 339 (396)
Q Consensus 334 ~P~w~~ 339 (396)
+|+|++
T Consensus 242 ~p~~~~ 247 (248)
T PRK06072 242 EPKFKG 247 (248)
T ss_pred CCCCCC
Confidence 999985
No 46
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-53 Score=404.03 Aligned_cols=255 Identities=24% Similarity=0.324 Sum_probs=224.3
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCch
Q 016043 8 NPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKD 86 (396)
Q Consensus 8 ~~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~ 86 (396)
++..+.|.++.+++|++||||||+++|+||.+|+++|.++++++++|++|++|||+|+| ++||+|+|++++..... ..
T Consensus 4 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 82 (262)
T PRK06144 4 TTSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFST-AE 82 (262)
T ss_pred ccCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccc-hh
Confidence 45667899999999999999999999999999999999999999999999999999999 89999999998754221 11
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccc-cCccCCchHHHHHhhccH-H
Q 016043 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS-IGFHTDCGFSFIHSRLPG-H 164 (396)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~-iGl~Pd~G~s~~L~rl~G-~ 164 (396)
....+.....+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||++ +|++|++|++++|+|++| .
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~ 162 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA 162 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence 11344455567888899999999999999999999999999999999999999999996 999999999999999999 9
Q ss_pred HHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhc
Q 016043 165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244 (396)
Q Consensus 165 ~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~ 244 (396)
.+.+|++||++++|+||+++|||+++||++++.+.+.
T Consensus 163 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------- 199 (262)
T PRK06144 163 RVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARAD------------------------------------------- 199 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999999877765333
Q ss_pred cCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 016043 245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI 324 (396)
Q Consensus 245 ~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv 324 (396)
+++++|++.||.+++.+|+.++......+ ..+.+.+..++.+ +|++||+
T Consensus 200 ------------------------~~a~~i~~~~~~a~~~~K~~l~~~~~~~l----~~~~~~~~~~~~~---~~~~e~~ 248 (262)
T PRK06144 200 ------------------------ALAELLAAHAPLTLRATKEALRRLRREGL----PDGDDLIRMCYMS---EDFREGV 248 (262)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHhhhcCH----HHHHHHHHHHhcC---hHHHHHH
Confidence 33789999999999999999997755444 4455677778888 9999999
Q ss_pred HHHHhhcCCCCCCCC
Q 016043 325 RALTIEKDNAPKWDP 339 (396)
Q Consensus 325 ~A~lidK~r~P~w~~ 339 (396)
++|+ +| |+|+|.+
T Consensus 249 ~af~-~k-r~p~~~~ 261 (262)
T PRK06144 249 EAFL-EK-RPPKWKG 261 (262)
T ss_pred HHHh-cC-CCCCCCC
Confidence 9999 66 8999975
No 47
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=8.8e-54 Score=396.35 Aligned_cols=250 Identities=28% Similarity=0.380 Sum_probs=224.5
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHH
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (396)
++...+++|+.||||||+++|||+..|+.+|.+++..+++|+.+.+|||||.|++||||+||+++......+.. ...|.
T Consensus 39 ~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~-~~~~~ 117 (290)
T KOG1680|consen 39 ELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVS-DGIFL 117 (290)
T ss_pred EEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccc-ccccc
Confidence 55567889999999999999999999999999999999999999999999999999999999998763332221 22222
Q ss_pred HHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhc
Q 016043 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT 172 (396)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LT 172 (396)
+....+...+||+||++||+|+|||++|++.||+|||+++++|++|+.++|++|.+|||.+|+|.+| .+|++++||
T Consensus 118 ---~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~lt 194 (290)
T KOG1680|consen 118 ---RVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILT 194 (290)
T ss_pred ---chhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHh
Confidence 2223344899999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHHH
Q 016043 173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII 252 (396)
Q Consensus 173 G~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei~ 252 (396)
|++++++||.++|||++|||++++...+.
T Consensus 195 g~~~~AqeA~~~GlVn~Vvp~~~~l~eAv--------------------------------------------------- 223 (290)
T KOG1680|consen 195 GRRLGAQEAKKIGLVNKVVPSGDALGEAV--------------------------------------------------- 223 (290)
T ss_pred cCcccHHHHHhCCceeEeecchhHHHHHH---------------------------------------------------
Confidence 99999999999999999999998654332
Q ss_pred HHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhcC
Q 016043 253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKD 332 (396)
Q Consensus 253 ~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK~ 332 (396)
+++++|++.||..++..|++++.+.+.++.+++..|..++...+.. +|.+|||.+|. +|
T Consensus 224 ----------------~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~---~d~~Eg~~~f~-~k- 282 (290)
T KOG1680|consen 224 ----------------KLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFAT---EDRLEGMTAFA-EK- 282 (290)
T ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhh---HHHHHHHHHhc-cc-
Confidence 3478999999999999999999999999999999999999999999 99999999997 66
Q ss_pred CCCCCCC
Q 016043 333 NAPKWDP 339 (396)
Q Consensus 333 r~P~w~~ 339 (396)
|+|+|+.
T Consensus 283 r~~~~~k 289 (290)
T KOG1680|consen 283 RKPKFSK 289 (290)
T ss_pred CCccccc
Confidence 9999984
No 48
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.9e-53 Score=402.24 Aligned_cols=249 Identities=20% Similarity=0.323 Sum_probs=224.5
Q ss_pred CCCCcEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCch
Q 016043 9 PDEQVVLGE-EIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKD 86 (396)
Q Consensus 9 ~~~~~v~~e-~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~ 86 (396)
+.+..+.++ .+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++.... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~--~~ 80 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLD--QA 80 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcC--hh
Confidence 344567777 4689999999999999999999999999999999999999999999999 8999999999875421 12
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HH
Q 016043 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (396)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~ 165 (396)
....++...+.++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|+ |+.|++++|+|++| ..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 22455666677888999999999999999999999999999999999999999999999998 88899999999999 89
Q ss_pred HHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhcc
Q 016043 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (396)
Q Consensus 166 a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~ 245 (396)
+.+|++||++++|+||+++||||++||++++.+.+.+
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~------------------------------------------- 196 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVER------------------------------------------- 196 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999998877654333
Q ss_pred CCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 016043 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR 325 (396)
Q Consensus 246 ~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~ 325 (396)
++++|+..||.+++.+|++++.....++.+.+..|...+..++.+ +|++||++
T Consensus 197 ------------------------~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~e~~~ 249 (256)
T PRK06143 197 ------------------------LAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLT---GEPQRHMA 249 (256)
T ss_pred ------------------------HHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcC---hHHHHHHH
Confidence 378999999999999999999887889999999999999999999 99999999
Q ss_pred HHHhhc
Q 016043 326 ALTIEK 331 (396)
Q Consensus 326 A~lidK 331 (396)
+|+ +|
T Consensus 250 af~-ek 254 (256)
T PRK06143 250 AFL-NR 254 (256)
T ss_pred HHH-hh
Confidence 999 66
No 49
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7e-53 Score=401.65 Aligned_cols=249 Identities=24% Similarity=0.350 Sum_probs=225.3
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCc--hhHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSK--DSCL 89 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~--~~~~ 89 (396)
+.|.++.+++|++||||||++.|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++....... ....
T Consensus 2 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK07260 2 EHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLV 81 (255)
T ss_pred CceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999886422111 1112
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHH
Q 016043 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (396)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~ 168 (396)
.+.+..+++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 161 (255)
T PRK07260 82 KIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATH 161 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHH
Confidence 34445567888999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tv 248 (396)
|+|||++++|+||+++|||+++||++++.+.+..
T Consensus 162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~---------------------------------------------- 195 (255)
T PRK07260 162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQ---------------------------------------------- 195 (255)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999998877654333
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 249 eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
.+++|++.+|.+++.+|+.++.....++++.+..|...+..++.+ +|++||+++|+
T Consensus 196 ---------------------~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af~ 251 (255)
T PRK07260 196 ---------------------LLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESLAFK---EDFKEGVRAFS 251 (255)
T ss_pred ---------------------HHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 378999999999999999999988889999999999999999999 99999999999
Q ss_pred hhc
Q 016043 329 IEK 331 (396)
Q Consensus 329 idK 331 (396)
+|
T Consensus 252 -~k 253 (255)
T PRK07260 252 -ER 253 (255)
T ss_pred -hc
Confidence 55
No 50
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-52 Score=401.67 Aligned_cols=254 Identities=20% Similarity=0.241 Sum_probs=224.1
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCc-hhHH
Q 016043 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSK-DSCL 89 (396)
Q Consensus 11 ~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~-~~~~ 89 (396)
++.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++....... ....
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK07509 2 MDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLF 81 (262)
T ss_pred CceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHh
Confidence 456899999999999999999999999999999999999999999999999999999999999999886421111 1111
Q ss_pred H----HHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-H
Q 016043 90 E----VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H 164 (396)
Q Consensus 90 ~----~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~ 164 (396)
. ......++...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 161 (262)
T PRK07509 82 KRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKD 161 (262)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHH
Confidence 1 1122345666788999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhc
Q 016043 165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244 (396)
Q Consensus 165 ~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~ 244 (396)
.+.+|+|||++++|+||+++||||++|+. +.+.
T Consensus 162 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~--------------------------------------------- 194 (262)
T PRK07509 162 VARELTYTARVFSAEEALELGLVTHVSDD--PLAA--------------------------------------------- 194 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHH---------------------------------------------
Confidence 99999999999999999999999999953 3221
Q ss_pred cCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 016043 245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI 324 (396)
Q Consensus 245 ~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv 324 (396)
+.+++++|++.+|.+++.+|++++.....++.+++..|.+.+..++.+ +|++||+
T Consensus 195 ----------------------a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~d~~e~~ 249 (262)
T PRK07509 195 ----------------------ALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLG---KNQKIAV 249 (262)
T ss_pred ----------------------HHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC---hhHHHHH
Confidence 124478899999999999999999988889999999999999999999 9999999
Q ss_pred HHHHhhcCCCCCCC
Q 016043 325 RALTIEKDNAPKWD 338 (396)
Q Consensus 325 ~A~lidK~r~P~w~ 338 (396)
++|+ +| |+|.|.
T Consensus 250 ~af~-ek-r~p~~~ 261 (262)
T PRK07509 250 KAQM-KK-RAPKFL 261 (262)
T ss_pred HHHh-cC-CCCCCC
Confidence 9999 66 889996
No 51
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-52 Score=399.95 Aligned_cols=255 Identities=22% Similarity=0.292 Sum_probs=228.2
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCC-CCchhH
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR-NSKDSC 88 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~-~~~~~~ 88 (396)
....|.++.+++|++|+||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.... ......
T Consensus 4 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 83 (260)
T PRK07827 4 VDTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAA 83 (260)
T ss_pred CCcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHH
Confidence 4557889999999999999999999999999999999999999999999999999999999999999876421 111111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEF 168 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 168 (396)
..++....++++.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+.+
T Consensus 84 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~~ 163 (260)
T PRK07827 84 VARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAAR 163 (260)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHHH
Confidence 34566667888999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tv 248 (396)
|++||++++|+||+++|||+++++ ++.+..
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a------------------------------------------------ 193 (260)
T PRK07827 164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAV------------------------------------------------ 193 (260)
T ss_pred HHHhCCccCHHHHHHcCCcccchH--HHHHHH------------------------------------------------
Confidence 999999999999999999999874 344322
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 249 eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
.+++++|++.||.+++.+|+++++.....+.+.+..|...+..++.+ +|++||+++|+
T Consensus 194 -------------------~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~af~ 251 (260)
T PRK07827 194 -------------------AALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLFVS---DEAREGMTAFL 251 (260)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHh
Confidence 23478899999999999999999988889999999999999999999 99999999998
Q ss_pred hhcCCCCCCC
Q 016043 329 IEKDNAPKWD 338 (396)
Q Consensus 329 idK~r~P~w~ 338 (396)
+| |+|+|+
T Consensus 252 -~k-r~p~~~ 259 (260)
T PRK07827 252 -QK-RPPRWA 259 (260)
T ss_pred -cC-CCCCCC
Confidence 66 789996
No 52
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-52 Score=408.40 Aligned_cols=257 Identities=21% Similarity=0.281 Sum_probs=221.5
Q ss_pred CCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC-------
Q 016043 11 EQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN------- 83 (396)
Q Consensus 11 ~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~------- 83 (396)
+..|.++.+++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|++||+|+|++++.....
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999998742100
Q ss_pred -------C-chhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHH
Q 016043 84 -------S-KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS 155 (396)
Q Consensus 84 -------~-~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s 155 (396)
. ......+......+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 0 00012233334567788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccH-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHH
Q 016043 156 FIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLN 234 (396)
Q Consensus 156 ~~L~rl~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (396)
++|+|++| .++++|+|||++++|+||+++|||+++||.+++.+.+.
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------- 209 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAAR--------------------------------- 209 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHH---------------------------------
Confidence 99999999 99999999999999999999999999999877654322
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhcc-ChHHHHHHHHHHHhhhh--cCHHHHHHHHHHHHHHH
Q 016043 235 KQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKS-SPTGLKITLRSVREGRE--QSLAECLKKEFRLTINI 311 (396)
Q Consensus 235 ~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~-sp~sl~~tk~~l~~~~~--~~l~~~l~~E~~~~~~~ 311 (396)
+.+++|+++ +|.+++.+|++++.... ..+... ..|...+..+
T Consensus 210 ----------------------------------~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~~~-~~e~~~~~~~ 254 (296)
T PRK08260 210 ----------------------------------ALAREIADNTSPVSVALTRQMMWRMAGADHPMEAH-RVDSRAIYSR 254 (296)
T ss_pred ----------------------------------HHHHHHHhcCChHHHHHHHHHHHhcccCCCcHHHH-HHHHHHHHHH
Confidence 337888885 99999999999998743 234443 5688888888
Q ss_pred HhcCCchHHHHHHHHHHhhcCCCCCCCCC
Q 016043 312 LRAIISADIYEGIRALTIEKDNAPKWDPP 340 (396)
Q Consensus 312 ~~~~~~~d~~eGv~A~lidK~r~P~w~~~ 340 (396)
+.+ +|++||+++|+ +| |+|.|+++
T Consensus 255 ~~~---~d~~egi~af~-~k-r~p~f~~~ 278 (296)
T PRK08260 255 GRS---GDGKEGVSSFL-EK-RPAVFPGK 278 (296)
T ss_pred ccC---hhHHHHHHHHh-cC-CCCCCCCC
Confidence 888 99999999999 66 89999975
No 53
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=1.6e-52 Score=400.36 Aligned_cols=254 Identities=19% Similarity=0.326 Sum_probs=226.1
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC-C-CCcccCCCchhhccCCCCchh
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV-G-RAFSAGGDLKMFYDGRNSKDS 87 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~-G-~aFcaG~Dl~~l~~~~~~~~~ 87 (396)
+++.|.++.+++|++||||||+++|+||.+|+.+|.++++.+++|+ |++|||+|. | ++||+|+|++++..... +
T Consensus 2 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~-- 77 (261)
T PRK11423 2 SMQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-D-- 77 (261)
T ss_pred CccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-c--
Confidence 4567999999999999999999999999999999999999999988 999999996 3 89999999998754211 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHH
Q 016043 88 CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLG 166 (396)
Q Consensus 88 ~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a 166 (396)
...+....++++..|..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++
T Consensus 78 ~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a 157 (261)
T PRK11423 78 PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIV 157 (261)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHH
Confidence 1234455567888999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccC
Q 016043 167 EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE 246 (396)
Q Consensus 167 ~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~ 246 (396)
.+|+|||++++|+||+++||||++||++++.+.+.
T Consensus 158 ~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~--------------------------------------------- 192 (261)
T PRK11423 158 KEMFFTASPITAQRALAVGILNHVVEVEELEDFTL--------------------------------------------- 192 (261)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999887765333
Q ss_pred CHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhh-cCH-HHHHHHHHHHHHHHHhcCCchHHHHHH
Q 016043 247 TVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSL-AECLKKEFRLTINILRAIISADIYEGI 324 (396)
Q Consensus 247 tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l-~~~l~~E~~~~~~~~~~~~~~d~~eGv 324 (396)
+++++|++.||.+++.+|++++.... ..+ .+.++.|.+....++.+ +|++||+
T Consensus 193 ----------------------~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~eg~ 247 (261)
T PRK11423 193 ----------------------QMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDS---EDYQEGM 247 (261)
T ss_pred ----------------------HHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCC---hhHHHHH
Confidence 34789999999999999999986543 344 68888899999999999 9999999
Q ss_pred HHHHhhcCCCCCCCC
Q 016043 325 RALTIEKDNAPKWDP 339 (396)
Q Consensus 325 ~A~lidK~r~P~w~~ 339 (396)
.+|+ +| |+|+|+.
T Consensus 248 ~af~-~k-r~p~~~~ 260 (261)
T PRK11423 248 NAFL-EK-RKPVFVG 260 (261)
T ss_pred HHHh-cc-CCCCCCC
Confidence 9999 66 8999975
No 54
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=1.8e-52 Score=402.41 Aligned_cols=256 Identities=20% Similarity=0.300 Sum_probs=222.6
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhH
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC 88 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~ 88 (396)
.+..|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++..........
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 90 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDG 90 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhh
Confidence 456799999999999999999999999999999999999999999999999999999 7999999999874321101110
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
...+ ..+.++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.
T Consensus 91 ~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~ 169 (273)
T PRK07396 91 VPRL-NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAR 169 (273)
T ss_pred hhhh-HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHH
Confidence 1111 1345677889999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|++||++++|+||+++||||++||++++.+.+.
T Consensus 170 ~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~---------------------------------------------- 203 (273)
T PRK07396 170 EIWFLCRQYDAQEALDMGLVNTVVPLADLEKETV---------------------------------------------- 203 (273)
T ss_pred HHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999877765333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+++++|++.||.+++.+|++++.... .++.....|...+..++.+ +|++||+++|
T Consensus 204 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~---~d~~egi~af 258 (273)
T PRK07396 204 ---------------------RWCREMLQNSPMALRCLKAALNADCD-GQAGLQELAGNATMLFYMT---EEAQEGRNAF 258 (273)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcC---hhHHHHHHHH
Confidence 33789999999999999999997644 4665666788888888888 9999999999
Q ss_pred HhhcCCCCCCCC
Q 016043 328 TIEKDNAPKWDP 339 (396)
Q Consensus 328 lidK~r~P~w~~ 339 (396)
+ +| |+|+|..
T Consensus 259 ~-~k-r~p~~~~ 268 (273)
T PRK07396 259 N-EK-RQPDFSK 268 (273)
T ss_pred h-CC-CCCCCCC
Confidence 9 66 8999975
No 55
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=3.3e-52 Score=398.92 Aligned_cols=255 Identities=20% Similarity=0.287 Sum_probs=224.3
Q ss_pred CCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCch
Q 016043 8 NPDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD 86 (396)
Q Consensus 8 ~~~~~~v~~e~-~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~ 86 (396)
+++.+.|.++. .++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++.+.... .
T Consensus 5 ~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~ 83 (265)
T PLN02888 5 TVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKG-D 83 (265)
T ss_pred cCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccc-h
Confidence 45667788886 789999999999999999999999999999999999999999999999999999999986432111 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HH
Q 016043 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (396)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~ 165 (396)
.. ....+++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..
T Consensus 84 -~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 159 (265)
T PLN02888 84 -VK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANR 159 (265)
T ss_pred -hh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHH
Confidence 11 11245667889999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhcc
Q 016043 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (396)
Q Consensus 166 a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~ 245 (396)
+.+|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 195 (265)
T PLN02888 160 AREVSLTAMPLTAETAERWGLVNHVVEESELLKKAR-------------------------------------------- 195 (265)
T ss_pred HHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887665333
Q ss_pred CCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH--hcCCchHHHHH
Q 016043 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINIL--RAIISADIYEG 323 (396)
Q Consensus 246 ~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~--~~~~~~d~~eG 323 (396)
+++++|++.+|.+++.+|++++.....++++++..|...+..++ .+ +|++||
T Consensus 196 -----------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~---~d~~e~ 249 (265)
T PLN02888 196 -----------------------EVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMT---KEQFQK 249 (265)
T ss_pred -----------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCC---HHHHHH
Confidence 34789999999999999999998888899999999988877775 36 999999
Q ss_pred HHHHHhhcCCCCCCCC
Q 016043 324 IRALTIEKDNAPKWDP 339 (396)
Q Consensus 324 v~A~lidK~r~P~w~~ 339 (396)
+++|+ +| |+|+=.|
T Consensus 250 ~~af~-ek-r~~~~~~ 263 (265)
T PLN02888 250 MQEFI-AG-RSSKKPS 263 (265)
T ss_pred HHHHH-hc-CCCCCCC
Confidence 99999 66 6666443
No 56
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=2.8e-52 Score=396.43 Aligned_cols=246 Identities=20% Similarity=0.302 Sum_probs=217.0
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHH
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (396)
|.++.+++|++||||||+ .|+||.+|+.+|.++++.+++|+++++|||+|+|++||+|+|++++.. . ....++.
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~----~-~~~~~~~ 76 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP----D-QCAAMLA 76 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc----h-hHHHHHH
Confidence 778899999999999997 599999999999999999999999999999999999999999997532 1 1134455
Q ss_pred HHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhc
Q 016043 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT 172 (396)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LT 172 (396)
...+++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|+ |++++|+|++| ..+++|+||
T Consensus 77 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt 155 (251)
T TIGR03189 77 SLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS 155 (251)
T ss_pred HHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence 5567888999999999999999999999999999999999999999999999999997 56789999999 899999999
Q ss_pred CCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHHH
Q 016043 173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII 252 (396)
Q Consensus 173 G~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei~ 252 (396)
|++++|+||+++|||++++|+.+ + ..+
T Consensus 156 g~~~~a~eA~~~Glv~~v~~~~~--~--~a~------------------------------------------------- 182 (251)
T TIGR03189 156 GRSIDGAEGARIGLANAVAEDPE--N--AAL------------------------------------------------- 182 (251)
T ss_pred CCCCCHHHHHHCCCcceecCcHH--H--HHH-------------------------------------------------
Confidence 99999999999999999997532 1 111
Q ss_pred HHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhc
Q 016043 253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLK-KEFRLTINILRAIISADIYEGIRALTIEK 331 (396)
Q Consensus 253 ~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~-~E~~~~~~~~~~~~~~d~~eGv~A~lidK 331 (396)
..++++|++.||.+++.+|++++.....++++.+. .|......++.+ +|++||+++|+ +|
T Consensus 183 ---------------~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s---~d~~eg~~af~-ek 243 (251)
T TIGR03189 183 ---------------AWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMAT---HDAVEGLNAFL-EK 243 (251)
T ss_pred ---------------HHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCC---HhHHHHHHHHH-hc
Confidence 01257899999999999999999888888888774 788888888898 99999999999 66
Q ss_pred CCCCCCCC
Q 016043 332 DNAPKWDP 339 (396)
Q Consensus 332 ~r~P~w~~ 339 (396)
|+|.|++
T Consensus 244 -r~p~~~~ 250 (251)
T TIGR03189 244 -RPALWED 250 (251)
T ss_pred -CCCCCCC
Confidence 8999975
No 57
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-52 Score=397.46 Aligned_cols=243 Identities=20% Similarity=0.281 Sum_probs=221.1
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~ 91 (396)
+.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++....... ...+
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--~~~~ 80 (249)
T PRK05870 3 DPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP--AEDG 80 (249)
T ss_pred ccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc--hHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999986532211 1344
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHh
Q 016043 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (396)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~ 170 (396)
+...++++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|+|++| ..+.+|+
T Consensus 81 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 160 (249)
T PRK05870 81 LRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAAL 160 (249)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHH
Confidence 556677788899999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHH
Q 016043 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tvee 250 (396)
|||++++|+||+++|||+++| +++.+.+.
T Consensus 161 ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~------------------------------------------------- 189 (249)
T PRK05870 161 LFGMRFDAEAAVRHGLALMVA--DDPVAAAL------------------------------------------------- 189 (249)
T ss_pred HhCCccCHHHHHHcCCHHHHH--hhHHHHHH-------------------------------------------------
Confidence 999999999999999999999 45544322
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 251 i~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
+++++|++.||.+++.+|++++.... .++++++..|...+..++.+ +|++||+++|+
T Consensus 190 ------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~eg~~af~ 247 (249)
T PRK05870 190 ------------------ELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQS---PEFAARLAAAQ 247 (249)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcC---hhHHHHHHHHh
Confidence 34789999999999999999999877 79999999999999999999 99999999998
No 58
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-52 Score=396.25 Aligned_cols=248 Identities=26% Similarity=0.283 Sum_probs=216.2
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~ 91 (396)
+.|.++++++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++..... .. ....
T Consensus 3 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~-~~~~ 80 (254)
T PRK08259 3 MSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NR-LHPS 80 (254)
T ss_pred ceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hh-hhhh
Confidence 348899999999999999999999999999999999999999999999999999999999999998754211 11 1110
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHh
Q 016043 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (396)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~ 170 (396)
....+...+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.|++++|+|++| ..+.+|+
T Consensus 81 --~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ll 158 (254)
T PRK08259 81 --GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLI 158 (254)
T ss_pred --hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 0011122334799999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred hcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHH
Q 016043 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tvee 250 (396)
|||++++|+||+++||||++||++++.+.+.
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------- 189 (254)
T PRK08259 159 LTGRPVDADEALAIGLANRVVPKGQARAAAE------------------------------------------------- 189 (254)
T ss_pred HcCCccCHHHHHHcCCCCEeeChhHHHHHHH-------------------------------------------------
Confidence 9999999999999999999999988765433
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016043 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (396)
Q Consensus 251 i~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lid 330 (396)
+++++|++.||.+++.+|++++.....++++++..|...+...+ . +|++||++||+ +
T Consensus 190 ------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~-~---~d~~egi~af~-~ 246 (254)
T PRK08259 190 ------------------ELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVL-A---AEALEGAARFA-A 246 (254)
T ss_pred ------------------HHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-h---hHHHHHHHHHH-h
Confidence 33789999999999999999998878899999999988766655 4 89999999999 6
Q ss_pred cCCCC
Q 016043 331 KDNAP 335 (396)
Q Consensus 331 K~r~P 335 (396)
|+|+|
T Consensus 247 ~~~~~ 251 (254)
T PRK08259 247 GAGRH 251 (254)
T ss_pred hhccc
Confidence 66766
No 59
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.3e-52 Score=394.19 Aligned_cols=243 Identities=21% Similarity=0.310 Sum_probs=218.5
Q ss_pred CcEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhH
Q 016043 12 QVVLGEEIGN---VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC 88 (396)
Q Consensus 12 ~~v~~e~~~~---v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~ 88 (396)
+.|+++.+++ |++||||||+++|+||.+|+++|.++++.++.|+++++|||+|.|++||+|+|++++.......
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~--- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGG--- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccc---
Confidence 3588888774 9999999999999999999999999999999999999999999999999999999876422111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
..+....++++..|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.
T Consensus 80 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~ 159 (251)
T PRK06023 80 TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAF 159 (251)
T ss_pred hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHH
Confidence 223344456788899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|++||++++|+||+++|||+++||.+++.+.+.
T Consensus 160 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 193 (251)
T PRK06023 160 ALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETL---------------------------------------------- 193 (251)
T ss_pred HHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887765333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+++++|++.||.+++.+|++++... ..+.+.+..|.+.+..++.+ +|++||+++|
T Consensus 194 ---------------------~~a~~l~~~~~~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~---~~~~e~~~af 248 (251)
T PRK06023 194 ---------------------KAAEELAAKPPQALQIARDLMRGPR-EDILARIDEEAKHFAARLKS---AEARAAFEAF 248 (251)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCC---HHHHHHHHHH
Confidence 3378999999999999999998764 47899999999999999999 9999999999
Q ss_pred H
Q 016043 328 T 328 (396)
Q Consensus 328 l 328 (396)
+
T Consensus 249 ~ 249 (251)
T PRK06023 249 M 249 (251)
T ss_pred h
Confidence 8
No 60
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-52 Score=404.24 Aligned_cols=257 Identities=24% Similarity=0.291 Sum_probs=218.7
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhcc----CC--
Q 016043 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYD----GR-- 82 (396)
Q Consensus 9 ~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~----~~-- 82 (396)
++++.|+++.+++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||||+|++||+|+||++... ..
T Consensus 2 ~~~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~ 81 (298)
T PRK12478 2 PDFQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMT 81 (298)
T ss_pred CCceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccc
Confidence 345679999999999999999999999999999999999999999999999999999999999999986321 00
Q ss_pred CCc-hhHHHH---HHHH---HHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeecccccc-CccCCchH
Q 016043 83 NSK-DSCLEV---VYRM---YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASI-GFHTDCGF 154 (396)
Q Consensus 83 ~~~-~~~~~~---~~~~---~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~i-Gl~Pd~G~ 154 (396)
... .....+ .... ..++..|.+++||+||+|||+|+|||++|+++||+|||+++++|++||+++ |++| |+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~ 159 (298)
T PRK12478 82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TG 159 (298)
T ss_pred ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hh
Confidence 000 101121 1111 235567889999999999999999999999999999999999999999997 9885 34
Q ss_pred HHHHhhccH-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhH
Q 016043 155 SFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVL 233 (396)
Q Consensus 155 s~~L~rl~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (396)
++ + +.+| .++.+|+|||++++|+||+++|||+++||++++.+.+.++
T Consensus 160 ~~-~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~------------------------------ 207 (298)
T PRK12478 160 MW-L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEV------------------------------ 207 (298)
T ss_pred HH-H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHH------------------------------
Confidence 44 3 4578 9999999999999999999999999999998877644433
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHH
Q 016043 234 NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE-QSLAECLKKEFRLTINIL 312 (396)
Q Consensus 234 ~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~-~~l~~~l~~E~~~~~~~~ 312 (396)
+++|+.+||.+++.+|++++.... .++.+++..|...+..++
T Consensus 208 -------------------------------------a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~ 250 (298)
T PRK12478 208 -------------------------------------ATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILDGLMR 250 (298)
T ss_pred -------------------------------------HHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 788999999999999999998766 569999999999999999
Q ss_pred hcCCchHHH--------HHHHHHHhhcCCCCCCCCCC
Q 016043 313 RAIISADIY--------EGIRALTIEKDNAPKWDPPT 341 (396)
Q Consensus 313 ~~~~~~d~~--------eGv~A~lidK~r~P~w~~~~ 341 (396)
.+ +|++ ||++||+ +| |+|+|+..+
T Consensus 251 ~s---~d~~e~~~~~~~egv~Af~-ek-R~p~f~~~~ 282 (298)
T PRK12478 251 NT---PDALEFIRTAETQGVRAAV-ER-RDGPFGDYS 282 (298)
T ss_pred cC---hhHHHHHHHHHHHHHHHHH-Hh-cCCcccccC
Confidence 99 9997 5999999 77 899998655
No 61
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-51 Score=390.84 Aligned_cols=240 Identities=22% Similarity=0.261 Sum_probs=216.5
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHH
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (396)
|.++.+++|++||||||+++|+||.+|+.+|.++++++++| ++++|||+|.|++||+|+|++.... ...+..
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~-------~~~~~~ 73 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY-------ADDFPD 73 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh-------HHHHHH
Confidence 56788999999999999999999999999999999999865 9999999999999999999985211 134445
Q ss_pred HHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhc
Q 016043 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT 172 (396)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LT 172 (396)
..+++++.|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|+||
T Consensus 74 ~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~lt 153 (243)
T PRK07854 74 ALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLG 153 (243)
T ss_pred HHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHc
Confidence 5677888999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHHH
Q 016043 173 GARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEII 252 (396)
Q Consensus 173 G~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei~ 252 (396)
|++++|+||+++|||+++++ +. .+
T Consensus 154 g~~~~a~eA~~~Glv~~v~~---~~-~a---------------------------------------------------- 177 (243)
T PRK07854 154 AEKLTAEQALATGMANRIGT---LA-DA---------------------------------------------------- 177 (243)
T ss_pred CCCcCHHHHHHCCCcccccC---HH-HH----------------------------------------------------
Confidence 99999999999999999964 22 11
Q ss_pred HHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhcC
Q 016043 253 KSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKD 332 (396)
Q Consensus 253 ~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK~ 332 (396)
.+++++|++.||.+++.+|++++.. .++++.+..|...+..++.+ +|++||+++|+ +|
T Consensus 178 ---------------~~~a~~l~~~~~~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~---~d~~eg~~af~-~k- 235 (243)
T PRK07854 178 ---------------QAWAAEIAGLAPLALQHAKRVLNDD--GAIEEAWPAHKELFDKAWAS---QDAIEAQVARI-EK- 235 (243)
T ss_pred ---------------HHHHHHHHhCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcC---chHHHHHHHHh-CC-
Confidence 2337889999999999999999876 67999999999999999999 99999999999 66
Q ss_pred CCCCCCC
Q 016043 333 NAPKWDP 339 (396)
Q Consensus 333 r~P~w~~ 339 (396)
|+|.|++
T Consensus 236 r~p~~~~ 242 (243)
T PRK07854 236 RPPKFQG 242 (243)
T ss_pred CCCCCCC
Confidence 8999975
No 62
>PLN02921 naphthoate synthase
Probab=100.00 E-value=2.2e-51 Score=402.79 Aligned_cols=255 Identities=20% Similarity=0.279 Sum_probs=219.3
Q ss_pred CCCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCC-c
Q 016043 10 DEQVVLGEE--IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNS-K 85 (396)
Q Consensus 10 ~~~~v~~e~--~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~-~ 85 (396)
.++.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++.+...... .
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~ 142 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGP 142 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccch
Confidence 456789988 589999999999999999999999999999999999999999999999 899999999987432111 1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-H
Q 016043 86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H 164 (396)
Q Consensus 86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~ 164 (396)
.....+ ....+...|.+++||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .
T Consensus 143 ~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~ 220 (327)
T PLN02921 143 DDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQK 220 (327)
T ss_pred hHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 111111 1245677899999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhc
Q 016043 165 LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFS 244 (396)
Q Consensus 165 ~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~ 244 (396)
.+.+|+|||++++|+||+++|||+++||.+++.+.+.
T Consensus 221 ~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~------------------------------------------- 257 (327)
T PLN02921 221 KAREMWFLARFYTASEALKMGLVNTVVPLDELEGETV------------------------------------------- 257 (327)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHH-------------------------------------------
Confidence 9999999999999999999999999999887765333
Q ss_pred cCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 016043 245 KETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGI 324 (396)
Q Consensus 245 ~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv 324 (396)
+++++|+++||.+++.+|++++..... .......|...+..++.+ +|++||+
T Consensus 258 ------------------------~~a~~la~~~p~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s---~d~~egi 309 (327)
T PLN02921 258 ------------------------KWCREILRNSPTAIRVLKSALNAADDG-HAGLQELGGNATLLFYGS---EEGNEGR 309 (327)
T ss_pred ------------------------HHHHHHHccCHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcC---HHHHHHH
Confidence 337899999999999999999987543 333344445777777888 9999999
Q ss_pred HHHHhhcCCCCCCCC
Q 016043 325 RALTIEKDNAPKWDP 339 (396)
Q Consensus 325 ~A~lidK~r~P~w~~ 339 (396)
++|+ +| |+|+|+.
T Consensus 310 ~Af~-ek-r~p~f~~ 322 (327)
T PLN02921 310 TAYL-EG-RAPDFSK 322 (327)
T ss_pred HHHh-cc-CCCCCCC
Confidence 9999 66 8999974
No 63
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.5e-51 Score=391.12 Aligned_cols=242 Identities=21% Similarity=0.260 Sum_probs=214.8
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHH
Q 016043 17 EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (396)
Q Consensus 17 e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (396)
+.+++|++||||||++ |+||.+|+.+|.++++.++.|++||+|||+|.|++||+|+|++++..... ......+.+...
T Consensus 7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~ 84 (249)
T PRK07938 7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPG-FTALIDANRGCF 84 (249)
T ss_pred ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccc-hhHHHHHHHHHH
Confidence 4578999999999985 99999999999999999999999999999999999999999998754211 111223334456
Q ss_pred HHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhcCCC
Q 016043 97 WLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGAR 175 (396)
Q Consensus 97 ~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LTG~~ 175 (396)
+++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|+|++| ..+.+|+|||++
T Consensus 85 ~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~ 161 (249)
T PRK07938 85 AAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAAT 161 (249)
T ss_pred HHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCc
Confidence 67788999999999999999999999999999999999999999999999985 56788999999 899999999999
Q ss_pred ccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHHHHHH
Q 016043 176 LNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIKSF 255 (396)
Q Consensus 176 l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei~~~L 255 (396)
++|+||+++|||+++||++++.+.+.
T Consensus 162 ~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------------ 187 (249)
T PRK07938 162 ITAAELHHFGSVEEVVPRDQLDEAAL------------------------------------------------------ 187 (249)
T ss_pred CCHHHHHHCCCccEEeCHHHHHHHHH------------------------------------------------------
Confidence 99999999999999999887765333
Q ss_pred HHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhcCCCC
Q 016043 256 EAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKDNAP 335 (396)
Q Consensus 256 ~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK~r~P 335 (396)
+++++|++.||.+++.+|++++.....++++.+..|......++.+ +|++||+++|+ +| |+|
T Consensus 188 -------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~d~~eg~~af~-ek-r~p 249 (249)
T PRK07938 188 -------------EVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLA---GVSDEHRDAFV-EK-RKA 249 (249)
T ss_pred -------------HHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC---ccHHHHHHHHH-hc-CCC
Confidence 3378999999999999999999887888999999999999999999 99999999999 66 666
No 64
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.7e-51 Score=388.45 Aligned_cols=252 Identities=18% Similarity=0.273 Sum_probs=219.4
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHH
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL 89 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~ 89 (396)
+++.|.++.+++|++||||||++.|+||.+|+.+|.++++.++ +++++|||+|.|++||+|+|++++...........
T Consensus 2 ~~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07112 2 DYQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADL 79 (255)
T ss_pred CCceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhh
Confidence 3567999999999999999999999999999999999999998 36999999999999999999998764221111111
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHH
Q 016043 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (396)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~ 168 (396)
......++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +.+|+|++| .++.+
T Consensus 80 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~ 158 (255)
T PRK07112 80 IDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHY 158 (255)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHH
Confidence 1234456788899999999999999999999999999999999999999999999999999875 467999999 99999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tv 248 (396)
|+|||++++|+||+++|||+++||+++. ..
T Consensus 159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~------------------------------------------------ 188 (255)
T PRK07112 159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LL------------------------------------------------ 188 (255)
T ss_pred HHHhCCcccHHHHHHcCCCceecCcHHH--HH------------------------------------------------
Confidence 9999999999999999999999986542 11
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 249 eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
.+++++|++.+|.+++.+|++++.. ...+.+.+..|.+....++.+ +|++||+++|+
T Consensus 189 -------------------~~~a~~l~~~~p~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~---~~~~eg~~af~ 245 (255)
T PRK07112 189 -------------------RKHLLRLRCLNKAAVARYKSYASTL-DDTVAAARPAALAANIEMFAD---PENLRKIARYV 245 (255)
T ss_pred -------------------HHHHHHHHhCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcC---hHHHHHHHHHH
Confidence 1337899999999999999999875 457999999999999999999 99999999999
Q ss_pred hhcCCCCCCCC
Q 016043 329 IEKDNAPKWDP 339 (396)
Q Consensus 329 idK~r~P~w~~ 339 (396)
+| |+|.|..
T Consensus 246 -~k-r~p~~~~ 254 (255)
T PRK07112 246 -ET-GKFPWEA 254 (255)
T ss_pred -cC-CCCCCCC
Confidence 66 8999974
No 65
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2.4e-51 Score=388.66 Aligned_cols=244 Identities=32% Similarity=0.485 Sum_probs=228.2
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHH
Q 016043 15 LGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYR 94 (396)
Q Consensus 15 ~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~ 94 (396)
.++.+++|++|+||||++.|+||.+|+.+|.++|+.++.|+++++||++|.|++||+|+|++++... .......+...
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~--~~~~~~~~~~~ 78 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS--DEEEAREFFRR 78 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH--HHHHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc--ccccccccchh
Confidence 3789999999999999999999999999999999999999999999999999999999999999875 23334778888
Q ss_pred HHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhcC
Q 016043 95 MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTG 173 (396)
Q Consensus 95 ~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LTG 173 (396)
.+.+...+..+|||+||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++| ..+.+|+|||
T Consensus 79 ~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g 158 (245)
T PF00378_consen 79 FQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTG 158 (245)
T ss_dssp HHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHHHHH
Q 016043 174 ARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAEIIK 253 (396)
Q Consensus 174 ~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tveei~~ 253 (396)
++++|+||+++||+++++|++++.+.+..
T Consensus 159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~--------------------------------------------------- 187 (245)
T PF00378_consen 159 EPISAEEALELGLVDEVVPDEELDEEALE--------------------------------------------------- 187 (245)
T ss_dssp CEEEHHHHHHTTSSSEEESGGGHHHHHHH---------------------------------------------------
T ss_pred ccchhHHHHhhcceeEEcCchhhhHHHHH---------------------------------------------------
Confidence 99999999999999999999987764443
Q ss_pred HHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhc
Q 016043 254 SFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (396)
Q Consensus 254 ~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK 331 (396)
.+++|++.+|.+++.+|+.+++.....+.+.+..|.+.+..++.+ +|++||+++|+ +|
T Consensus 188 ----------------~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~f~-eK 245 (245)
T PF00378_consen 188 ----------------LAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKS---EDFQEGIAAFL-EK 245 (245)
T ss_dssp ----------------HHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH-TT
T ss_pred ----------------HHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHh-Cc
Confidence 378999999999999999999998889999999999999999999 99999999999 65
No 66
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=7.4e-51 Score=391.96 Aligned_cols=252 Identities=17% Similarity=0.206 Sum_probs=223.3
Q ss_pred CCCCCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC--CCcccCCCchhhccCCCC
Q 016043 8 NPDEQVVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG--RAFSAGGDLKMFYDGRNS 84 (396)
Q Consensus 8 ~~~~~~v~~e~-~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G--~aFcaG~Dl~~l~~~~~~ 84 (396)
+.....|.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|++|++|||||.| ++||+|+|++++......
T Consensus 7 ~~~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~ 85 (278)
T PLN03214 7 PGATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTS 85 (278)
T ss_pred CCCCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccc
Confidence 44556799998 6999999999985 6999999999999999999999999999999998 699999999987542111
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCc-cCCchHHHHHhhccH
Q 016043 85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGF-HTDCGFSFIHSRLPG 163 (396)
Q Consensus 85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl-~Pd~G~s~~L~rl~G 163 (396)
......++.....++..|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|+|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G 165 (278)
T PLN03214 86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVID 165 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcC
Confidence 1112344444456778899999999999999999999999999999999999999999999999 599999999999999
Q ss_pred -HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHh
Q 016043 164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDEC 242 (396)
Q Consensus 164 -~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 242 (396)
..+.+|+|||++++|+||+++||||++||.+++.+.+.
T Consensus 166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~----------------------------------------- 204 (278)
T PLN03214 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA----------------------------------------- 204 (278)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH-----------------------------------------
Confidence 99999999999999999999999999999877654332
Q ss_pred hccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHH
Q 016043 243 FSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYE 322 (396)
Q Consensus 243 f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~e 322 (396)
+++++|++.+|.+++.+|+++++....++++++..|.+.+..++.+ +|++|
T Consensus 205 --------------------------~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s---~d~~e 255 (278)
T PLN03214 205 --------------------------SAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGGWKMLSE---PSIIK 255 (278)
T ss_pred --------------------------HHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC---HHHHH
Confidence 3478899999999999999999988889999999999999999999 99999
Q ss_pred HHHHHHhhc
Q 016043 323 GIRALTIEK 331 (396)
Q Consensus 323 Gv~A~lidK 331 (396)
|+++|+ +|
T Consensus 256 gi~afl-ek 263 (278)
T PLN03214 256 ALGGVM-ER 263 (278)
T ss_pred HHHHHH-HH
Confidence 999999 55
No 67
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.2e-50 Score=394.76 Aligned_cols=256 Identities=20% Similarity=0.227 Sum_probs=219.3
Q ss_pred CCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-------CCcccCCCchhhccC
Q 016043 11 EQVVLGEE--IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-------RAFSAGGDLKMFYDG 81 (396)
Q Consensus 11 ~~~v~~e~--~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-------~aFcaG~Dl~~l~~~ 81 (396)
+.+|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|+| ++||+|+|++.+...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 45688888 899999999999999999999999999999999999999999999998 599999999976321
Q ss_pred C----C-Cc-h--hHHHHH-HHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEe-CCceeeccccccCccCC
Q 016043 82 R----N-SK-D--SCLEVV-YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT-EKTVFSTPEASIGFHTD 151 (396)
Q Consensus 82 ~----~-~~-~--~~~~~~-~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIat-e~a~f~~PE~~iGl~Pd 151 (396)
. . .. . ...... ...+.+...|.++|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 0 00 0 001111 112346677889999999999999999999999999999999 69999999999999999
Q ss_pred chHHHHHhhccH-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChh
Q 016043 152 CGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQ 230 (396)
Q Consensus 152 ~G~s~~L~rl~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (396)
+|++++|+|++| ..+.+|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~----------------------------- 232 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEAL----------------------------- 232 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHH-----------------------------
Confidence 999999999999 89999999999999999999999999999887765333
Q ss_pred hhHHHHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q 016043 231 SVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTIN 310 (396)
Q Consensus 231 ~~~~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~ 310 (396)
+++++|++.||.+++.+|++++.... .+.+....|.+.+..
T Consensus 233 --------------------------------------~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~ 273 (302)
T PRK08321 233 --------------------------------------EWAREINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRL 273 (302)
T ss_pred --------------------------------------HHHHHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHH
Confidence 33789999999999999999987655 344455568888888
Q ss_pred HHhcCCchHHHHHHHHHHhhcCCCCCCCC
Q 016043 311 ILRAIISADIYEGIRALTIEKDNAPKWDP 339 (396)
Q Consensus 311 ~~~~~~~~d~~eGv~A~lidK~r~P~w~~ 339 (396)
++.+ +|++||+++|+ +| |+|.|+.
T Consensus 274 ~~~~---~d~~egi~af~-ek-r~p~~~~ 297 (302)
T PRK08321 274 AYMT---DEAQEGRDAFL-EK-RDPDWSD 297 (302)
T ss_pred HhcC---HHHHHHHHHHh-cc-CCCCCCC
Confidence 8888 99999999999 66 8999975
No 68
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.8e-50 Score=383.76 Aligned_cols=245 Identities=20% Similarity=0.267 Sum_probs=222.8
Q ss_pred CCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhH
Q 016043 9 PDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSC 88 (396)
Q Consensus 9 ~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~ 88 (396)
+.+..++++.+++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.|+.||+|+|++++.....+.
T Consensus 2 ~~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~--- 78 (249)
T PRK07110 2 MMKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK--- 78 (249)
T ss_pred CCCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh---
Confidence 45677899999999999999999999999999999999999999999999999999999999999999876432211
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGE 167 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~ 167 (396)
.. +.. ..++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..+.
T Consensus 79 ~~-~~~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~ 156 (249)
T PRK07110 79 GT-FTE-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQ 156 (249)
T ss_pred hh-Hhh-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHH
Confidence 22 222 56788899999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCC
Q 016043 168 FLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKET 247 (396)
Q Consensus 168 ~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~t 247 (396)
+|++||++++++||+++||++++||++++.+.+.
T Consensus 157 ~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~---------------------------------------------- 190 (249)
T PRK07110 157 EMLLTARYYRGAELKKRGVPFPVLPRAEVLEKAL---------------------------------------------- 190 (249)
T ss_pred HHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHH----------------------------------------------
Confidence 9999999999999999999999999887665333
Q ss_pred HHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 016043 248 VAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL 327 (396)
Q Consensus 248 veei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~ 327 (396)
+.+++|++.||.+++.+|++++.....++.+.+..|...+..++.+ +|++||++++
T Consensus 191 ---------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~---~~~~egi~~~ 246 (249)
T PRK07110 191 ---------------------ELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQ---PEVKRRIESL 246 (249)
T ss_pred ---------------------HHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCC---HhHHHHHHHh
Confidence 3378999999999999999999988899999999999999999999 9999999986
Q ss_pred H
Q 016043 328 T 328 (396)
Q Consensus 328 l 328 (396)
.
T Consensus 247 ~ 247 (249)
T PRK07110 247 Y 247 (249)
T ss_pred c
Confidence 3
No 69
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-50 Score=382.89 Aligned_cols=252 Identities=23% Similarity=0.308 Sum_probs=221.6
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHH
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCL 89 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~ 89 (396)
.++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++..... .. .
T Consensus 2 ~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~--~ 78 (258)
T PRK06190 2 TEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGS-AY--G 78 (258)
T ss_pred CCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccc-hh--h
Confidence 45679999999999999999999999999999999999999999999999999999999999999999864221 11 1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHH
Q 016043 90 EVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEF 168 (396)
Q Consensus 90 ~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~ 168 (396)
. ....+.++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .++.+
T Consensus 79 ~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 157 (258)
T PRK06190 79 A-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARR 157 (258)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence 1 223456788899999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETV 248 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tv 248 (396)
|++||++++|+||+++|||+++||++++.+.+.
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~----------------------------------------------- 190 (258)
T PRK06190 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRAR----------------------------------------------- 190 (258)
T ss_pred HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999887765333
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 249 AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 249 eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
+++++|+++||.+++.+|++++.....++.+.+..|...+..++.+ .++++..-.+.-+
T Consensus 191 --------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s-~~~~~~~~~~~~~ 249 (258)
T PRK06190 191 --------------------RLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRS-VSPDGIAARREAV 249 (258)
T ss_pred --------------------HHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHH
Confidence 3378999999999999999999988889999999999999999887 4466655555545
Q ss_pred hhcCC
Q 016043 329 IEKDN 333 (396)
Q Consensus 329 idK~r 333 (396)
+.+.|
T Consensus 250 ~~~~~ 254 (258)
T PRK06190 250 MARGR 254 (258)
T ss_pred HHhhh
Confidence 45433
No 70
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=1.7e-48 Score=402.87 Aligned_cols=253 Identities=13% Similarity=0.087 Sum_probs=223.3
Q ss_pred EEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhh-CCCceEEEEEcCCCC-cccCCCchhh
Q 016043 14 VLGEEIGNVRLVTLNRPRQL-------------NVISSKVVSLLAEYLEKWEK-DDQAKLVIVKGVGRA-FSAGGDLKMF 78 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~l-------------Nal~~~m~~~L~~~l~~~~~-d~~v~~Vvl~G~G~a-FcaG~Dl~~l 78 (396)
|.++++++|++||||||+++ |+||.+|+.+|.+++.+++. |++||+|||||.|++ ||+|+|++..
T Consensus 260 v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~ 339 (546)
T TIGR03222 260 VAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLE 339 (546)
T ss_pred EEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCcccc
Confidence 55567899999999999999 99999999999999999985 599999999999977 9999999842
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe-cccccccc-cccccCCCEEEE-------eCCceeeccccccCcc
Q 016043 79 YDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA-HGITMGGG-ASLMVPLKFSVV-------TEKTVFSTPEASIGFH 149 (396)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v-~G~a~GGG-~~lal~~d~rIa-------te~a~f~~PE~~iGl~ 149 (396)
. ... .......+....+++..|.+++||+||+| ||+|+||| ++|+++||+||| +++++|++||+++|++
T Consensus 340 ~-~~~-~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~ 417 (546)
T TIGR03222 340 A-HKD-HWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLY 417 (546)
T ss_pred c-ccc-chhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccC
Confidence 2 111 11113333334557889999999999999 89999999 999999999999 8999999999999999
Q ss_pred CCchHHHHHhhcc-H-HHH--HHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhccc
Q 016043 150 TDCGFSFIHSRLP-G-HLG--EFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDV 225 (396)
Q Consensus 150 Pd~G~s~~L~rl~-G-~~a--~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (396)
|++|++++|+|++ | .++ ..|+|||++++|+||+++|||+++||++++.+.+.+
T Consensus 418 p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~----------------------- 474 (546)
T TIGR03222 418 PMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRI----------------------- 474 (546)
T ss_pred CCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHH-----------------------
Confidence 9999999999998 8 777 559999999999999999999999999887764333
Q ss_pred CCChhhhHHHHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHH-HHHH
Q 016043 226 QLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC-LKKE 304 (396)
Q Consensus 226 ~~~~~~~~~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~-l~~E 304 (396)
++++|+++||.+++.+|++++.+...++++. +..|
T Consensus 475 --------------------------------------------~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e 510 (546)
T TIGR03222 475 --------------------------------------------ALEERASFSPDALTGLEANLRFAGPETMETRIFGRL 510 (546)
T ss_pred --------------------------------------------HHHHHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHH
Confidence 3789999999999999999999999999999 9999
Q ss_pred HHHHHHHHhcCCchHHHH---HHHHHHhhcCCCCCCCCC
Q 016043 305 FRLTINILRAIISADIYE---GIRALTIEKDNAPKWDPP 340 (396)
Q Consensus 305 ~~~~~~~~~~~~~~d~~e---Gv~A~lidK~r~P~w~~~ 340 (396)
..++..++.+ +|.+| |++||+ +| |+|+|+-.
T Consensus 511 ~~~~~~~~~~---~d~~e~~~g~~af~-ek-r~p~f~~~ 544 (546)
T TIGR03222 511 TAWQNWIFNR---PNAVGENGALKVYG-SG-KKAQFDME 544 (546)
T ss_pred HHHHHHHhcC---CcccchhhHHHHHc-cC-CCCCCCcc
Confidence 9999999999 99999 999999 66 89999753
No 71
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=5.1e-48 Score=400.56 Aligned_cols=253 Identities=12% Similarity=0.063 Sum_probs=222.1
Q ss_pred EEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhh-CCCceEEEEEcCC-CCcccCCCchhhc
Q 016043 15 LGEEIGNVRLVTLNRPRQL-------------NVISSKVVSLLAEYLEKWEK-DDQAKLVIVKGVG-RAFSAGGDLKMFY 79 (396)
Q Consensus 15 ~~e~~~~v~~itLnrP~~l-------------Nal~~~m~~~L~~~l~~~~~-d~~v~~Vvl~G~G-~aFcaG~Dl~~l~ 79 (396)
.+++.++|++||||||+++ |+||.+|+.+|.+++++++. |++||+|||||+| ++||+|+|++.+
T Consensus 265 ~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~- 343 (550)
T PRK08184 265 EIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLL- 343 (550)
T ss_pred EEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhh-
Confidence 3445689999999999998 68999999999999999986 7999999999999 599999998733
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEec-ccccccc-cccccCCCEEEEe-------CCceeeccccccCccC
Q 016043 80 DGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAH-GITMGGG-ASLMVPLKFSVVT-------EKTVFSTPEASIGFHT 150 (396)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~-G~a~GGG-~~lal~~d~rIat-------e~a~f~~PE~~iGl~P 150 (396)
.... ......++....+++..|..+|||+||+|| |.|+||| ++|+++||+|||+ ++++|++||+++|++|
T Consensus 344 ~~~~-~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p 422 (550)
T PRK08184 344 AHKD-HWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYP 422 (550)
T ss_pred cccc-hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCC
Confidence 2111 111123334445577889999999999997 9999999 9999999999999 9999999999999999
Q ss_pred CchHHHHHhhc-cH-HHHHHH--hhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccC
Q 016043 151 DCGFSFIHSRL-PG-HLGEFL--ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQ 226 (396)
Q Consensus 151 d~G~s~~L~rl-~G-~~a~~L--~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (396)
++|++++|+|+ +| .+++++ ++||++++|+||+++|||+++||++++.+.+..+
T Consensus 423 ~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~----------------------- 479 (550)
T PRK08184 423 MVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIA----------------------- 479 (550)
T ss_pred CCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHH-----------------------
Confidence 99999999988 69 888886 5999999999999999999999998887644433
Q ss_pred CChhhhHHHHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHH-HHHHH
Q 016043 227 LDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAEC-LKKEF 305 (396)
Q Consensus 227 ~~~~~~~~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~-l~~E~ 305 (396)
+++|++.||.+++.+|++++.+...++++. +..|.
T Consensus 480 --------------------------------------------a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~ 515 (550)
T PRK08184 480 --------------------------------------------LEERASLSPDALTGMEANLRFAGPETMETRIFGRLT 515 (550)
T ss_pred --------------------------------------------HHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 789999999999999999999999999999 99999
Q ss_pred HHHHHHHhcCCchHHHH---HHHHHHhhcCCCCCCCCCC
Q 016043 306 RLTINILRAIISADIYE---GIRALTIEKDNAPKWDPPT 341 (396)
Q Consensus 306 ~~~~~~~~~~~~~d~~e---Gv~A~lidK~r~P~w~~~~ 341 (396)
.++..++.+ +|.+| |++||+ +| |+|+|+..+
T Consensus 516 ~~~~~~~~~---~d~~e~~~g~~af~-ek-r~~~f~~~~ 549 (550)
T PRK08184 516 AWQNWIFQR---PNAVGEKGALKVYG-TG-QKAQFDWNR 549 (550)
T ss_pred HHHHHHhcC---CcccccchHHHHhc-cC-CCCCCCCCC
Confidence 999999999 99999 999999 66 899998654
No 72
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.1e-47 Score=355.47 Aligned_cols=212 Identities=17% Similarity=0.223 Sum_probs=188.0
Q ss_pred CcEEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCch
Q 016043 12 QVVLGEEI-----GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKD 86 (396)
Q Consensus 12 ~~v~~e~~-----~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~ 86 (396)
+.|.++.. +++++||||||++ |+||.+|+.+|.+++++++.|+++++|||||.|++||+|+|++++..... .
T Consensus 3 ~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~--~ 79 (222)
T PRK05869 3 EFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSA--Q 79 (222)
T ss_pred cchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccCh--h
Confidence 44555544 8999999999986 99999999999999999999999999999999999999999999764321 1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HH
Q 016043 87 SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (396)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~ 165 (396)
....+++...+++..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| ..
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~ 159 (222)
T PRK05869 80 EADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSR 159 (222)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHH
Confidence 11334444567888999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhcc
Q 016043 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (396)
Q Consensus 166 a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~ 245 (396)
+.++++||++++|+||+++||+|+++|++++.+.+.
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~-------------------------------------------- 195 (222)
T PRK05869 160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAA-------------------------------------------- 195 (222)
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999887765333
Q ss_pred CCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhh
Q 016043 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGR 293 (396)
Q Consensus 246 ~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~ 293 (396)
+.+++|++.+|.+++.+|+++++..
T Consensus 196 -----------------------~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 196 -----------------------AWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred -----------------------HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3478999999999999999998764
No 73
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.5e-47 Score=366.84 Aligned_cols=234 Identities=24% Similarity=0.353 Sum_probs=203.1
Q ss_pred CCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCC------
Q 016043 10 DEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRN------ 83 (396)
Q Consensus 10 ~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~------ 83 (396)
+++.|.++.+++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|++||+|+|++++.....
T Consensus 2 ~~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~ 81 (288)
T PRK08290 2 EYEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPD 81 (288)
T ss_pred CCceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999998742111
Q ss_pred -----------Cch---hHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCcc
Q 016043 84 -----------SKD---SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFH 149 (396)
Q Consensus 84 -----------~~~---~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~ 149 (396)
... ...........+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl- 160 (288)
T PRK08290 82 QHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI- 160 (288)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-
Confidence 000 01111223345667889999999999999999999999999999999999999999999998
Q ss_pred CCchHHHHHhhccH-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCC
Q 016043 150 TDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLD 228 (396)
Q Consensus 150 Pd~G~s~~L~rl~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (396)
|+ +++++++|++| ..+++|+|||++++|+||+++|||+++||++++.+.+.
T Consensus 161 ~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~--------------------------- 212 (288)
T PRK08290 161 PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETL--------------------------- 212 (288)
T ss_pred Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHH---------------------------
Confidence 54 45778899999 99999999999999999999999999999887765333
Q ss_pred hhhhHHHHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhc-CHHHHHHHHHHH
Q 016043 229 GQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQ-SLAECLKKEFRL 307 (396)
Q Consensus 229 ~~~~~~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~-~l~~~l~~E~~~ 307 (396)
+++++|++.||.+++.+|++++..... ++++++..|...
T Consensus 213 ----------------------------------------~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T PRK08290 213 ----------------------------------------ELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDL 252 (288)
T ss_pred ----------------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 337899999999999999999988764 799999999999
Q ss_pred HHHHH
Q 016043 308 TINIL 312 (396)
Q Consensus 308 ~~~~~ 312 (396)
.....
T Consensus 253 ~~~~~ 257 (288)
T PRK08290 253 HQLGH 257 (288)
T ss_pred HHHcc
Confidence 88877
No 74
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=3.2e-46 Score=400.75 Aligned_cols=280 Identities=15% Similarity=0.198 Sum_probs=225.7
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCC-CCchhHHH
Q 016043 13 VVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR-NSKDSCLE 90 (396)
Q Consensus 13 ~v~~e~-~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~-~~~~~~~~ 90 (396)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|+|++||+|+|++++.... ........
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 86 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQ 86 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHH
Confidence 577774 7899999999999999999999999999999999999999999999999999999999886421 11122245
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHH
Q 016043 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (396)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L 169 (396)
+++..++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus 87 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~l 166 (715)
T PRK11730 87 WLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEW 166 (715)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHH
Confidence 6666777888999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhccc-------CCChhhhHHHHHHHHHh
Q 016043 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDV-------QLDGQSVLNKQSIIDEC 242 (396)
Q Consensus 170 ~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~I~~~ 242 (396)
+|||++++|+||+++||||++||++++.+.+.++++ ++...+ .+...+.. ...+.++
T Consensus 167 lltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~--------------~la~~~~~~~~~~~~~~~p~a--~~~~~~~ 230 (715)
T PRK11730 167 IAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLK--------------QAIAGKLDWKARRQPKLEPLK--LSKIEAM 230 (715)
T ss_pred HHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHH--------------HHhhcCCccccccCccccccc--ccchhHH
Confidence 999999999999999999999999888765555532 111110 00000000 0001222
Q ss_pred hccCCHHHHHHHHHHhhccCCCccHHHH-HHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHH
Q 016043 243 FSKETVAEIIKSFEAEAGKEGNGWIGPV-LKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY 321 (396)
Q Consensus 243 f~~~tveei~~~L~~~~~~~~~~~a~~~-~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~ 321 (396)
+... .+++. .++..+..|.++ .++++++.+...+++++++.|.+.+..++.+ +|++
T Consensus 231 ~~~~-------------------~~k~~~~~~~~~~~pa~~-~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~d~~ 287 (715)
T PRK11730 231 MSFT-------------------TAKGMVAQKAGKHYPAPM-TAVKTIEAAAGLGRDEALELEAKGFVKLAKT---NVAR 287 (715)
T ss_pred HHHH-------------------HHHHHHHHhhccCCccHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHH
Confidence 1111 11121 244556666666 7788999988889999999999999999999 9999
Q ss_pred HHHHHHHhhc
Q 016043 322 EGIRALTIEK 331 (396)
Q Consensus 322 eGv~A~lidK 331 (396)
||+++|+.++
T Consensus 288 egi~aF~~~~ 297 (715)
T PRK11730 288 ALVGIFLNDQ 297 (715)
T ss_pred HHHHHHHHHH
Confidence 9999999543
No 75
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-45 Score=360.19 Aligned_cols=218 Identities=22% Similarity=0.306 Sum_probs=188.9
Q ss_pred CCCCCCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCC--
Q 016043 7 KNPDEQVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNS-- 84 (396)
Q Consensus 7 ~~~~~~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~-- 84 (396)
.+..++.|.++.+++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||+|.|++||+|+|++++......
T Consensus 5 ~~~~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~ 84 (302)
T PRK08272 5 DLDNLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGG 84 (302)
T ss_pred ccCCCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccc
Confidence 345677899999999999999999999999999999999999999999999999999999999999999998642110
Q ss_pred --c--------------hhH-----HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccc
Q 016043 85 --K--------------DSC-----LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPE 143 (396)
Q Consensus 85 --~--------------~~~-----~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE 143 (396)
. ..+ ..++...++++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe 164 (302)
T PRK08272 85 GGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPP 164 (302)
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcc
Confidence 0 001 1234555677888999999999999999999999999999999999999999999
Q ss_pred cccCccCCchHHHHHhhccH-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhh
Q 016043 144 ASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFS 222 (396)
Q Consensus 144 ~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (396)
+++|.+|.. ..+++++| .++.+|+|||++++|+||+++|||+++||++++.+.+.+
T Consensus 165 ~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~-------------------- 221 (302)
T PRK08272 165 TRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTER-------------------- 221 (302)
T ss_pred hhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHH--------------------
Confidence 998666643 35678889 999999999999999999999999999998877654433
Q ss_pred cccCCChhhhHHHHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhh
Q 016043 223 EDVQLDGQSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGRE 294 (396)
Q Consensus 223 ~~~~~~~~~~~~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~ 294 (396)
++++|++.||.+++.+|++++....
T Consensus 222 -----------------------------------------------la~~ia~~~~~a~~~~K~~l~~~~~ 246 (302)
T PRK08272 222 -----------------------------------------------LVERIAAVPVNQLAMVKLAVNSALL 246 (302)
T ss_pred -----------------------------------------------HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3789999999999999999998764
No 76
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.2e-44 Score=349.20 Aligned_cols=244 Identities=19% Similarity=0.201 Sum_probs=201.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhh-----CCCceEEEEEcC-CCCcccCCCchhhccCCC-Cc-
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEK-----DDQAKLVIVKGV-GRAFSAGGDLKMFYDGRN-SK- 85 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~-----d~~v~~Vvl~G~-G~aFcaG~Dl~~l~~~~~-~~- 85 (396)
|.++.+++|++|||| |+++|+||.+|+.+|.+++++++. |++|++|||+|. |+.||+|+|++++..... ..
T Consensus 19 i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~ 97 (287)
T PRK08788 19 VYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDR 97 (287)
T ss_pred EEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccch
Confidence 556678999999996 999999999999999999999998 899999999999 699999999998753211 11
Q ss_pred hhHHHHHHHHHHHHHHHH---hcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhcc
Q 016043 86 DSCLEVVYRMYWLCHHIH---TYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP 162 (396)
Q Consensus 86 ~~~~~~~~~~~~l~~~i~---~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~ 162 (396)
.....+.+..++.+..+. .+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~v 177 (287)
T PRK08788 98 DALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRV 177 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHh
Confidence 111222233333333333 69999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHH
Q 016043 163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE 241 (396)
Q Consensus 163 G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 241 (396)
| .++++|+|||+.++|+||+++|||+++||++++.+.+.
T Consensus 178 G~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~---------------------------------------- 217 (287)
T PRK08788 178 GPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVR---------------------------------------- 217 (287)
T ss_pred hHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHH----------------------------------------
Confidence 9 99999999999999999999999999999888765333
Q ss_pred hhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHH
Q 016043 242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY 321 (396)
Q Consensus 242 ~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~ 321 (396)
+++++|+++ |.++...|+..+.....++.+.+..|......++... ..-.
T Consensus 218 ---------------------------~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 267 (287)
T PRK08788 218 ---------------------------TFIRKSKRK-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLE--EKDL 267 (287)
T ss_pred ---------------------------HHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcc--cccH
Confidence 336778876 7777777777776666789999999887777655541 4556
Q ss_pred HHHHHHH
Q 016043 322 EGIRALT 328 (396)
Q Consensus 322 eGv~A~l 328 (396)
+-|..|.
T Consensus 268 ~~~~~~~ 274 (287)
T PRK08788 268 RTMERLV 274 (287)
T ss_pred HHHHHHH
Confidence 7777776
No 77
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.5e-44 Score=387.73 Aligned_cols=282 Identities=20% Similarity=0.249 Sum_probs=223.2
Q ss_pred CcEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhH
Q 016043 12 QVVLGEE-IGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSC 88 (396)
Q Consensus 12 ~~v~~e~-~~~v~~itLnrP-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~ 88 (396)
..+.++. +++|++|||||| +++|+||.+|+.+|.++++.++.|++|++|||+|.+ ++||+|+|++++..... ....
T Consensus 5 ~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~-~~~~ 83 (708)
T PRK11154 5 SAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKT-AQEA 83 (708)
T ss_pred ceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCC-HHHH
Confidence 3467777 789999999999 699999999999999999999999999999999986 89999999998854221 1112
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCC--ceeeccccccCccCCchHHHHHhhccH-HH
Q 016043 89 LEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRLPG-HL 165 (396)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~--a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~ 165 (396)
..+.+...+++..|.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++| ..
T Consensus 84 ~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~ 163 (708)
T PRK11154 84 EALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVST 163 (708)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHH
Confidence 345555567888999999999999999999999999999999999996 599999999999999999999999999 89
Q ss_pred HHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhcc
Q 016043 166 GEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSK 245 (396)
Q Consensus 166 a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~ 245 (396)
+++|+|||++++|+||+++||+|++||++++.+.+.++++.. ... . ...+.. . ...+.
T Consensus 164 A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~--------------~~~-~-~~~~~~---~---~~~~~ 221 (708)
T PRK11154 164 ALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKG--------------KPA-R-RPLPVR---E---RLLEG 221 (708)
T ss_pred HHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhc--------------CCc-c-CcCCch---h---hhccc
Confidence 999999999999999999999999999988877666554310 000 0 000000 0 00000
Q ss_pred CCH--HHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 016043 246 ETV--AEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG 323 (396)
Q Consensus 246 ~tv--eei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG 323 (396)
... ..+++. +...+++-.+..-.|+..+|++++.+...++++++..|.+.+..++.+ +|+++|
T Consensus 222 ~p~~~~~~~~~------------~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~ 286 (708)
T PRK11154 222 NPLGRALLFKQ------------ARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMT---PESAAL 286 (708)
T ss_pred CchhHHHHHHH------------HHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHH
Confidence 000 111111 111122223334479999999999998899999999999999999999 999999
Q ss_pred HHHHHhhc
Q 016043 324 IRALTIEK 331 (396)
Q Consensus 324 v~A~lidK 331 (396)
+++|+.++
T Consensus 287 ~~aF~~~~ 294 (708)
T PRK11154 287 RSIFFATT 294 (708)
T ss_pred HHHHHHHH
Confidence 99999765
No 78
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-45 Score=342.27 Aligned_cols=224 Identities=18% Similarity=0.223 Sum_probs=199.1
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~ 91 (396)
+.|.++.+++|++||||||+ .|+||.+|+.+|.++++.++ +++++|||+|.|++||+|+|++++... ......+
T Consensus 3 ~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~---~~~~~~~ 76 (229)
T PRK06213 3 ELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG---AQAAIAL 76 (229)
T ss_pred ceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc---hHhHHHH
Confidence 46889999999999999995 69999999999999999988 467999999999999999999988642 1223556
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCC-ceeeccccccCccCCchHHHHHhhccH-HHHHHH
Q 016043 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (396)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~-a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L 169 (396)
+...+++...|.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+.|+.+++++.+| ..+.+|
T Consensus 77 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~l 156 (229)
T PRK06213 77 LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRA 156 (229)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHH
Confidence 677778889999999999999999999999999999999999999 999999999999988888888988888 888999
Q ss_pred hhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHH
Q 016043 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVA 249 (396)
Q Consensus 170 ~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tve 249 (396)
++||++++|+||+++||||++||++++.+.+.
T Consensus 157 ll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~------------------------------------------------ 188 (229)
T PRK06213 157 VINAEMFDPEEAVAAGFLDEVVPPEQLLARAQ------------------------------------------------ 188 (229)
T ss_pred HHcCcccCHHHHHHCCCceeccChHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999887765333
Q ss_pred HHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 016043 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLT 308 (396)
Q Consensus 250 ei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~ 308 (396)
+.+++|++.+|.+++.+|++++.....++.+.++.|.+.+
T Consensus 189 -------------------~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~ 228 (229)
T PRK06213 189 -------------------AAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAAEF 228 (229)
T ss_pred -------------------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence 3378899999999999999999887788999888887653
No 79
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=2.2e-44 Score=351.40 Aligned_cols=283 Identities=15% Similarity=0.245 Sum_probs=213.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCC-CchhHHHHHHHHHHHH
Q 016043 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRN-SKDSCLEVVYRMYWLC 99 (396)
Q Consensus 22 v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~-~~~~~~~~~~~~~~l~ 99 (396)
+++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.| ++||+|+|++++..... .......++...++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999999 79999999998765211 1222345555566788
Q ss_pred HHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhcCCCccH
Q 016043 100 HHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNG 178 (396)
Q Consensus 100 ~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LTG~~l~a 178 (396)
..|..++||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|++||++++|
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA 197 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA 197 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence 8999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHcCccceecCCCChHHHHHHHHhccCCCH-HHHHHHHHHhhcccCCC---hhhhHHHHHHHHHh-hccCCHHHHHH
Q 016043 179 KELVAAGLATHFVPSEKLPELEKRLIGLNTGDE-IAVKSAIEEFSEDVQLD---GQSVLNKQSIIDEC-FSKETVAEIIK 253 (396)
Q Consensus 179 ~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~~~-f~~~tveei~~ 253 (396)
+||+++|||+++||+.+++. .+.. +| -..++.+++|....... ...+....+.+..+ -...-+++-++
T Consensus 198 ~EA~~~GLVd~VVp~~~~~~---~~~~----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~~~~ 270 (360)
T TIGR03200 198 HKAKRLGIIMDVVPALKVDG---KFVA----NPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQGTIDLSLLDEAVE 270 (360)
T ss_pred HHHHHcCChheecCchhcCc---chhc----CcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcccchHhHHHHHHH
Confidence 99999999999999888731 1110 11 01122222222211110 11222222333322 01111222222
Q ss_pred HHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhc
Q 016043 254 SFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEK 331 (396)
Q Consensus 254 ~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK 331 (396)
+++.++...-|.++.-++..+|......+...-..-..++..-|. .+.++|++||- +|
T Consensus 271 ---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~ 328 (360)
T TIGR03200 271 ---------------ALCAKLLNTFPECLTKSIEELRKPKLFAWNQNKENSRAWLALNMM----NEARTGFRAFN-EG 328 (360)
T ss_pred ---------------HHHHHHHHhchHHHHHHHHHhhhHHHHHHHhhhhhhHHHHHhhcc----cccchhhHHHh-cc
Confidence 345568888999999999999988776666665555555544444 48899999998 53
No 80
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=7e-45 Score=324.12 Aligned_cols=260 Identities=22% Similarity=0.310 Sum_probs=233.5
Q ss_pred CCCcEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCC
Q 016043 10 DEQVVLGEE----IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNS 84 (396)
Q Consensus 10 ~~~~v~~e~----~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~ 84 (396)
..++|.+++ +.|+.+|-+|||.+.|+|+.-|+.++.+.++++..|+.+|+|+|++.- +.||||.|+++-....
T Consensus 25 ~~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms-- 102 (291)
T KOG1679|consen 25 NANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMS-- 102 (291)
T ss_pred CCceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCC--
Confidence 356787775 457999999999999999999999999999999999999999999887 9999999999865432
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-
Q 016043 85 KDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG- 163 (396)
Q Consensus 85 ~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G- 163 (396)
......|......++..|.++|.|+||+|+|.++|||++++++||+|||.++++|+++|++++++|+.||+++|||++|
T Consensus 103 ~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ 182 (291)
T KOG1679|consen 103 PSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGV 182 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhH
Confidence 3334788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhh
Q 016043 164 HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECF 243 (396)
Q Consensus 164 ~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 243 (396)
.++.+|++|++.++|.||...|||+|+|...+-.+.+.
T Consensus 183 alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~------------------------------------------ 220 (291)
T KOG1679|consen 183 ALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAY------------------------------------------ 220 (291)
T ss_pred HHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHH------------------------------------------
Confidence 99999999999999999999999999997654222111
Q ss_pred ccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 016043 244 SKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEG 323 (396)
Q Consensus 244 ~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eG 323 (396)
+-|.+++++|.-+.|.+++++|..|+.|...++..++..|..-..+.+.+ .|-.||
T Consensus 221 ---------------------~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t---~drLeg 276 (291)
T KOG1679|consen 221 ---------------------QKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPT---KDRLEG 276 (291)
T ss_pred ---------------------HHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHHhcCcH---HHHHHH
Confidence 11345689999999999999999999999999999999999998888888 999999
Q ss_pred HHHHHhhcCCCCCCCC
Q 016043 324 IRALTIEKDNAPKWDP 339 (396)
Q Consensus 324 v~A~lidK~r~P~w~~ 339 (396)
+.||- +| |+|.+++
T Consensus 277 laaf~-ek-r~p~y~G 290 (291)
T KOG1679|consen 277 LAAFK-EK-RKPEYKG 290 (291)
T ss_pred HHHHH-hh-cCCCcCC
Confidence 99998 66 8999875
No 81
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=6.9e-44 Score=381.84 Aligned_cols=277 Identities=18% Similarity=0.242 Sum_probs=221.3
Q ss_pred EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEE-EcCCCCcccCCCchhhccCCCCchhHHHHHHH
Q 016043 17 EEIGNVRLVTLNRP-RQLNVISSKVVSLLAEYLEKWEKDDQAKLVIV-KGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYR 94 (396)
Q Consensus 17 e~~~~v~~itLnrP-~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl-~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~ 94 (396)
+.+++|++|||||| ++.|+||.+|+.+|.++++.++.|++|++||| +|.|++||+|+|++++..... ......++..
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~-~~~~~~~~~~ 84 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQT-AGEAKALAQQ 84 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCC-hhHHHHHHHH
Confidence 45689999999999 69999999999999999999999999999986 678899999999999854211 1222445556
Q ss_pred HHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCC--ceeeccccccCccCCchHHHHHhhccH-HHHHHHhh
Q 016043 95 MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLAL 171 (396)
Q Consensus 95 ~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~--a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~L 171 (396)
.+.++..|.+++||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++| ..+++|+|
T Consensus 85 ~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~lll 164 (699)
T TIGR02440 85 GQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMIL 164 (699)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHH
Confidence 677888999999999999999999999999999999999986 799999999999999999999999999 99999999
Q ss_pred cCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccC--CHH
Q 016043 172 TGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKE--TVA 249 (396)
Q Consensus 172 TG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~--tve 249 (396)
||+.++|++|+++||||++||++++.+.+.++++.. .+...+.+.. . +.-+.. ...
T Consensus 165 tG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~----------------~~~~~~~~~~---~---~~~~~~~~a~~ 222 (699)
T TIGR02440 165 TGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG----------------KPIRKPLSLQ---E---RLLEGTPLGRA 222 (699)
T ss_pred cCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC----------------CCCCCCccch---h---hhcccCchhHH
Confidence 999999999999999999999998887666664310 0000000000 0 000000 001
Q ss_pred HHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 016043 250 EIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTI 329 (396)
Q Consensus 250 ei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~li 329 (396)
.+.+. +.+.+++-.+..-.|...+|++++.+...++++++..|.+.+..++.+ +|+++++++|+.
T Consensus 223 ~~~~~------------~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s---~~~~~~~~~f~~ 287 (699)
T TIGR02440 223 LLFDQ------------AAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMT---PESAALRSIFFA 287 (699)
T ss_pred HHHHH------------HHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 11111 112222334445678889999999999999999999999999999999 999999999997
Q ss_pred hc
Q 016043 330 EK 331 (396)
Q Consensus 330 dK 331 (396)
++
T Consensus 288 ~~ 289 (699)
T TIGR02440 288 TT 289 (699)
T ss_pred HH
Confidence 65
No 82
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.1e-42 Score=372.86 Aligned_cols=284 Identities=15% Similarity=0.199 Sum_probs=222.9
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCC-CCchhHHH
Q 016043 13 VVLGEE-IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGR-NSKDSCLE 90 (396)
Q Consensus 13 ~v~~e~-~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~-~~~~~~~~ 90 (396)
.+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|+|++||+|+|++++.... ........
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 86 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQ 86 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHH
Confidence 577774 7899999999999999999999999999999999999999999999999999999999986421 11222234
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHH
Q 016043 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFL 169 (396)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L 169 (396)
+++...+++..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| ..+++|
T Consensus 87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~l 166 (714)
T TIGR02437 87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEW 166 (714)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 5555677888999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHH----hhcccCCChhhhHHHHHHHHHhhcc
Q 016043 170 ALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEE----FSEDVQLDGQSVLNKQSIIDECFSK 245 (396)
Q Consensus 170 ~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~I~~~f~~ 245 (396)
+|||++++|++|+++||+|++||++++.+.+.+++.. .+.. .... .+....+ ....+.++|+.
T Consensus 167 lltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~----------~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~ 233 (714)
T TIGR02437 167 IASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKD----------AINGKLDWKAKR-QPKLEPL--KLSKIEAMMSF 233 (714)
T ss_pred HHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHH----------HhhcCCcccccC-CCCcccc--cccchHHHHHH
Confidence 9999999999999999999999998887766555321 1110 0000 0000000 00112222221
Q ss_pred CCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 016043 246 ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIR 325 (396)
Q Consensus 246 ~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~ 325 (396)
+. +.+.+.......-.+-..+.+.++.+...++++++..|.+.+.+++.+ ++.++.++
T Consensus 234 ~~-------------------~~~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s---~~a~~l~~ 291 (714)
T TIGR02437 234 TT-------------------AKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKT---SEAKALIG 291 (714)
T ss_pred HH-------------------HHHHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence 11 112122223332334445567888888889999999999999999999 99999999
Q ss_pred HHHhhc
Q 016043 326 ALTIEK 331 (396)
Q Consensus 326 A~lidK 331 (396)
+|+.++
T Consensus 292 ~ff~~r 297 (714)
T TIGR02437 292 LFLNDQ 297 (714)
T ss_pred HHhhhH
Confidence 999765
No 83
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-42 Score=310.48 Aligned_cols=261 Identities=22% Similarity=0.323 Sum_probs=224.8
Q ss_pred CCCCCcEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccC---
Q 016043 8 NPDEQVVLGEE---IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDG--- 81 (396)
Q Consensus 8 ~~~~~~v~~e~---~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~--- 81 (396)
+.++....+.+ ...|..+.||||.|+||||..|+.++.++++.+..||++|+|||.|+||.||||.|+..+...
T Consensus 15 ~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~ 94 (292)
T KOG1681|consen 15 DHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRIL 94 (292)
T ss_pred ccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhcc
Confidence 34455444442 456999999999999999999999999999999999999999999999999999997665431
Q ss_pred -CCCch------hHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchH
Q 016043 82 -RNSKD------SCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGF 154 (396)
Q Consensus 82 -~~~~~------~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~ 154 (396)
..+++ ..+++....+.-+..|.+||||+|++|+|.|+|||+.|..+||+|+|++++.|..-|+.+|+..|+|.
T Consensus 95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT 174 (292)
T KOG1681|consen 95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT 174 (292)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh
Confidence 11111 13677777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccH--HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhh
Q 016043 155 SFIHSRLPG--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSV 232 (396)
Q Consensus 155 s~~L~rl~G--~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (396)
..+||..+| ..++++++|++.++|.||+..||+.++.|+.+-.. ..
T Consensus 175 L~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll-~~------------------------------- 222 (292)
T KOG1681|consen 175 LNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELL-NG------------------------------- 222 (292)
T ss_pred HhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHH-hh-------------------------------
Confidence 999999999 68999999999999999999999999998754211 11
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q 016043 233 LNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINIL 312 (396)
Q Consensus 233 ~~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~ 312 (396)
+..+++.|+.+||.++..||+.+...++.+.++.|..=..+-...+
T Consensus 223 ----------------------------------~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L 268 (292)
T KOG1681|consen 223 ----------------------------------ALPMAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSML 268 (292)
T ss_pred ----------------------------------hHHHHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 2345889999999999999999999999999999999888888888
Q ss_pred hcCCchHHHHHHHHHHhhcCCCCCCC
Q 016043 313 RAIISADIYEGIRALTIEKDNAPKWD 338 (396)
Q Consensus 313 ~~~~~~d~~eGv~A~lidK~r~P~w~ 338 (396)
.+ .|+.+.+.|.+ .|+..+-|.
T Consensus 269 ~s---~Dl~~av~a~m-~k~k~~tfs 290 (292)
T KOG1681|consen 269 LS---DDLVKAVMAQM-EKLKTVTFS 290 (292)
T ss_pred HH---HHHHHHHHHHh-hcCCCCCcc
Confidence 88 99999999999 453333353
No 84
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=3.1e-41 Score=362.43 Aligned_cols=303 Identities=18% Similarity=0.233 Sum_probs=219.7
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEE-EEEcCCCCcccCCCchhhccCCCCc
Q 016043 8 NPDEQVVLGEEIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLV-IVKGVGRAFSAGGDLKMFYDGRNSK 85 (396)
Q Consensus 8 ~~~~~~v~~e~~~~v~~itLnrP~-~lNal~~~m~~~L~~~l~~~~~d~~v~~V-vl~G~G~aFcaG~Dl~~l~~~~~~~ 85 (396)
.+.+..+.++.+++|++||||||+ +.|+||.+|+.+|.++++.++.|++|++| |++|.|++||+|+||+++..... .
T Consensus 9 ~~~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~-~ 87 (737)
T TIGR02441 9 LMARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT-A 87 (737)
T ss_pred CCCCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC-h
Confidence 345567999999999999999998 68999999999999999999999999965 56999999999999999864211 1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCC--ceeeccccccCccCCchHHHHHhhccH
Q 016043 86 DSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEASIGFHTDCGFSFIHSRLPG 163 (396)
Q Consensus 86 ~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~--a~f~~PE~~iGl~Pd~G~s~~L~rl~G 163 (396)
.....++....+++..|.+++||+||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 88 QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 223556666678889999999999999999999999999999999999987 689999999999999999999999999
Q ss_pred -HHHHHHhhcCCCccHHHHHHcCccceecCC--CChHHHHHHHHhccCCCHHHHHHHHHHhhccc-CCCh-hhhHHHHHH
Q 016043 164 -HLGEFLALTGARLNGKELVAAGLATHFVPS--EKLPELEKRLIGLNTGDEIAVKSAIEEFSEDV-QLDG-QSVLNKQSI 238 (396)
Q Consensus 164 -~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~--~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~ 238 (396)
..+++|+|||++++|++|+++||||++||+ +++..+.++..+.. .........+..... .... ........
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l---~~~A~~~a~~l~~~~~~~~~~~~~~~~~~- 243 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYL---EEVAVKFAQGLANGKLSINRDKGLVHKIT- 243 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHH---HHHHHHHHHHhhcccCCccccccccCccc-
Confidence 899999999999999999999999999996 22211111110000 000000111110000 0000 00000000
Q ss_pred HHHhhcc-CCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCc
Q 016043 239 IDECFSK-ETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIIS 317 (396)
Q Consensus 239 I~~~f~~-~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~ 317 (396)
....+. .....+++...+ .+.++ .+....+...+.+.+..+...++++++..|.+.+..++.+
T Consensus 244 -~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s--- 307 (737)
T TIGR02441 244 -QYVMTNPFVRQQVYKTAED-----------KVMKQ-TKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMT--- 307 (737)
T ss_pred -hhhcccchhHHHHHHHHHH-----------HHHHh-ccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC---
Confidence 000000 001112221111 11222 3333455666777888888889999999999999999999
Q ss_pred hHHHHHHHHHHhhc
Q 016043 318 ADIYEGIRALTIEK 331 (396)
Q Consensus 318 ~d~~eGv~A~lidK 331 (396)
+..+.-++.|+.++
T Consensus 308 ~~a~al~~~f~~~~ 321 (737)
T TIGR02441 308 FESKALIGLFHGQT 321 (737)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999775
No 85
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=9e-42 Score=322.07 Aligned_cols=183 Identities=19% Similarity=0.252 Sum_probs=157.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCCCchhhccCCCCchhHHHHH
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAK-LVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVV 92 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~-~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~ 92 (396)
+.++.+++|++|+||||++ |+||.+|+.+|.++++.++.|++++ +||++|.|+.||+|+|++++............+.
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 6788899999999999986 9999999999999999999999875 7778999999999999998753211111123344
Q ss_pred HHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEe-CCceeeccccccCcc-CCchHHHHHhhccH-HHH-HH
Q 016043 93 YRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVT-EKTVFSTPEASIGFH-TDCGFSFIHSRLPG-HLG-EF 168 (396)
Q Consensus 93 ~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIat-e~a~f~~PE~~iGl~-Pd~G~s~~L~rl~G-~~a-~~ 168 (396)
+..++++..|.++|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|+. |++ ++.+|++++| ..+ ++
T Consensus 81 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~~a~~~ 159 (239)
T PLN02267 81 AKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSPAARRD 159 (239)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChHHHHHH
Confidence 556678888999999999999999999999999999999998 568999999999997 655 5778999888 888 59
Q ss_pred HhhcCCCccHHHHHHcCccceecCC-CChHH
Q 016043 169 LALTGARLNGKELVAAGLATHFVPS-EKLPE 198 (396)
Q Consensus 169 L~LTG~~l~a~eA~~~GLa~~~v~~-~~l~~ 198 (396)
|++||++++|+||+++||++++||+ +++.+
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~ 190 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVE 190 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHH
Confidence 9999999999999999999999985 45554
No 86
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-41 Score=303.67 Aligned_cols=254 Identities=22% Similarity=0.333 Sum_probs=208.7
Q ss_pred CCCCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcC--C-CCcccCCCchhhccC-C-
Q 016043 9 PDEQVVLGEEI-GNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGV--G-RAFSAGGDLKMFYDG-R- 82 (396)
Q Consensus 9 ~~~~~v~~e~~-~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~--G-~aFcaG~Dl~~l~~~-~- 82 (396)
..+++|++++. ++++.||+|||+++||+.+..+.+|.+++..+..|++|.+|+|||+ | ++||+|||-+--... .
T Consensus 15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY 94 (282)
T COG0447 15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY 94 (282)
T ss_pred CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence 35789999997 9999999999999999999999999999999999999999999985 6 999999997654331 0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhcc
Q 016043 83 NSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP 162 (396)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~ 162 (396)
.++..... -....+.++|+++||||||.|+|.++|||-.|-+.||+-||+++++|+..-.++|-|-++-||-+|.|.+
T Consensus 95 ~~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 95 VDDDGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred cCCccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 01111110 1123566789999999999999999999999999999999999999999999999997777777899999
Q ss_pred H-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHH
Q 016043 163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE 241 (396)
Q Consensus 163 G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 241 (396)
| .+|+++.+.++.++|+||+.+|+|+.|||.++|++...+
T Consensus 173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~--------------------------------------- 213 (282)
T COG0447 173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQ--------------------------------------- 213 (282)
T ss_pred hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHH---------------------------------------
Confidence 9 899999999999999999999999999999988763322
Q ss_pred hhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHH--HHHHHHHHHHHHHHhcCCchH
Q 016043 242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLA--ECLKKEFRLTINILRAIISAD 319 (396)
Q Consensus 242 ~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~--~~l~~E~~~~~~~~~~~~~~d 319 (396)
| ++.|.++||++++..|.+++.... ++. +.|.-+..+ -...+ ++
T Consensus 214 ------------------------W----~~E~l~kSP~AlR~LK~Afnad~D-GlaG~q~~ag~at~--L~YmT---dE 259 (282)
T COG0447 214 ------------------------W----AREMLAKSPTALRMLKAAFNADCD-GLAGLQELAGNATL--LYYMT---DE 259 (282)
T ss_pred ------------------------H----HHHHHhcChHHHHHHHHHhcCCCc-hhhHHHHhcccceE--EEEec---hh
Confidence 4 578899999999999999985433 221 222222221 12345 89
Q ss_pred HHHHHHHHHhhcCCCCCCCC
Q 016043 320 IYEGIRALTIEKDNAPKWDP 339 (396)
Q Consensus 320 ~~eGv~A~lidK~r~P~w~~ 339 (396)
.+||-.||+ +| |+|.|+.
T Consensus 260 a~EGr~AF~-eK-R~Pdf~~ 277 (282)
T COG0447 260 AQEGRDAFL-EK-RKPDFSK 277 (282)
T ss_pred hhhhHHHHh-hc-cCCChHh
Confidence 999999999 77 9999873
No 87
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=4.4e-40 Score=300.40 Aligned_cols=190 Identities=30% Similarity=0.451 Sum_probs=175.7
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHH
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (396)
|.++.++++++|+||||++.|++|.+|+++|.++++.++.|+++++|||+|.|+.||+|+|++++............+++
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~ 80 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR 80 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999764432222467888
Q ss_pred HHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhc
Q 016043 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALT 172 (396)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LT 172 (396)
..+++...|..++||+||++||+|+|||++++++||+||+++++.|++||+++|++|+.|++++|+|++| ..+.++++|
T Consensus 81 ~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~ 160 (195)
T cd06558 81 ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLT 160 (195)
T ss_pred HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred CCCccHHHHHHcCccceecCCCChHHHHHHH
Q 016043 173 GARLNGKELVAAGLATHFVPSEKLPELEKRL 203 (396)
Q Consensus 173 G~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l 203 (396)
|+.++|.||+++||++++++.+++.+.+.++
T Consensus 161 g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~ 191 (195)
T cd06558 161 GRRISAEEALELGLVDEVVPDEELLAAALEL 191 (195)
T ss_pred CCccCHHHHHHcCCCCeecChhHHHHHHHHH
Confidence 9999999999999999999998877655554
No 88
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=298.39 Aligned_cols=253 Identities=20% Similarity=0.287 Sum_probs=226.4
Q ss_pred CCCCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchh
Q 016043 9 PDEQVVLGEEIGNVRLVTLN-RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDS 87 (396)
Q Consensus 9 ~~~~~v~~e~~~~v~~itLn-rP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~ 87 (396)
+.+..+.+++.+++.+|.+| ||++.|+||.+|...|..+|....+|+++..++++|.|+.||+|.|+..+.....++..
T Consensus 4 ~~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~ 83 (266)
T KOG0016|consen 4 MRYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN 83 (266)
T ss_pred ccccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence 45678999999999999999 99999999999999999999999999999999999999999999999998764332211
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhcc
Q 016043 88 -----CLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP 162 (396)
Q Consensus 88 -----~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~ 162 (396)
...+......+......+|||+||.|||+++|-|+.+...||+++|+|++.|..|.+.+|+.|++|+||.||+.+
T Consensus 84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIM 163 (266)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhh
Confidence 122223333467788899999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHH
Q 016043 163 G-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDE 241 (396)
Q Consensus 163 G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 241 (396)
| ..+.+|+|.|++++|.||+..|||+++++.+.+.+.+
T Consensus 164 G~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v----------------------------------------- 202 (266)
T KOG0016|consen 164 GSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEV----------------------------------------- 202 (266)
T ss_pred chhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHH-----------------------------------------
Confidence 9 9999999999999999999999999999997776422
Q ss_pred hhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHH
Q 016043 242 CFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIY 321 (396)
Q Consensus 242 ~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~ 321 (396)
.+.++++++.+|.+++..|+++|......+.++.++|.......|.+ +|+.
T Consensus 203 --------------------------~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s---~e~~ 253 (266)
T KOG0016|consen 203 --------------------------LKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVS---AECL 253 (266)
T ss_pred --------------------------HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccC---hHHH
Confidence 12378899999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhc
Q 016043 322 EGIRALTIEK 331 (396)
Q Consensus 322 eGv~A~lidK 331 (396)
+.+.+|+.++
T Consensus 254 ~~~~~~~~~~ 263 (266)
T KOG0016|consen 254 ARFKQYLSKK 263 (266)
T ss_pred HHHHHHhccc
Confidence 9999999543
No 89
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=287.74 Aligned_cols=254 Identities=25% Similarity=0.347 Sum_probs=227.2
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHH
Q 016043 12 QVVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEV 91 (396)
Q Consensus 12 ~~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~ 91 (396)
+..+++.+++|+.|+||+|+|+|.|+..|+.+|...|..-.++.++|+|||+..|+.||||.|++++......+. -...
T Consensus 32 ~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~-haev 110 (287)
T KOG1682|consen 32 DLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDI-HAEV 110 (287)
T ss_pred cccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchH-HHHH
Confidence 346777889999999999999999999999999999999888899999999999999999999999987543222 2788
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHh
Q 016043 92 VYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLA 170 (396)
Q Consensus 92 ~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~ 170 (396)
|+...++...|.++|.|+||-|||.+...|+.|...||++||+++++|+.|..++|+|...-|. -|.|.+. ..+.||+
T Consensus 111 Fqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML 189 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYML 189 (287)
T ss_pred HHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998655443 4778777 8999999
Q ss_pred hcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCChhhhHHHHHHHHHhhccCCHHH
Q 016043 171 LTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDGQSVLNKQSIIDECFSKETVAE 250 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~tvee 250 (396)
+||.+++++||+..||++.+||.++|+..++.+
T Consensus 190 ~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i----------------------------------------------- 222 (287)
T KOG1682|consen 190 MTGLPITGEEALISGLVSKVVPAEELDKEIEEI----------------------------------------------- 222 (287)
T ss_pred HhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999987643333
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 016043 251 IIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIE 330 (396)
Q Consensus 251 i~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lid 330 (396)
...|...|..-+.+.|+.......++-.+++....+..+.-+.- .|.+|||.+|+ +
T Consensus 223 --------------------~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql---~d~kegiasf~-~ 278 (287)
T KOG1682|consen 223 --------------------TNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQL---GDTKEGIASFF-E 278 (287)
T ss_pred --------------------HHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccc---cchHHHHHHHh-c
Confidence 56777788888889999988888889999999998888888888 99999999999 7
Q ss_pred cCCCCCCCC
Q 016043 331 KDNAPKWDP 339 (396)
Q Consensus 331 K~r~P~w~~ 339 (396)
| |.|.|++
T Consensus 279 k-rp~~~~h 286 (287)
T KOG1682|consen 279 K-RPPNWKH 286 (287)
T ss_pred c-CCCCcCC
Confidence 7 9999986
No 90
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=4.2e-38 Score=325.67 Aligned_cols=196 Identities=14% Similarity=0.125 Sum_probs=166.0
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-hCCCceEEEEEcCC-CCcccCCCc
Q 016043 8 NPDEQVVLGEEIGNVRLVTLNRPR----------QLNVISSKVVSLLAEYLEKWE-KDDQAKLVIVKGVG-RAFSAGGDL 75 (396)
Q Consensus 8 ~~~~~~v~~e~~~~v~~itLnrP~----------~lNal~~~m~~~L~~~l~~~~-~d~~v~~Vvl~G~G-~aFcaG~Dl 75 (396)
++.++.|.++.+++|++||||||+ |+|+||.+|+.+|.++++.++ .|+++|+|||||.+ ++||+|+|+
T Consensus 7 ~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL 86 (546)
T TIGR03222 7 PSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI 86 (546)
T ss_pred CCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence 455678999999999999999986 999999999999999999999 78999999999975 999999999
Q ss_pred hhhccCCCCch-hHHHHHHH-HHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCC--ceeeccccc-cCccC
Q 016043 76 KMFYDGRNSKD-SCLEVVYR-MYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEAS-IGFHT 150 (396)
Q Consensus 76 ~~l~~~~~~~~-~~~~~~~~-~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~--a~f~~PE~~-iGl~P 150 (396)
+++........ ....+... ...+...+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P 166 (546)
T TIGR03222 87 FMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLP 166 (546)
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCC
Confidence 98753211111 11111111 123455678899999999999999999999999999999996 799999997 99999
Q ss_pred CchHHHHHh--hccH-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHH
Q 016043 151 DCGFSFIHS--RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL 203 (396)
Q Consensus 151 d~G~s~~L~--rl~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l 203 (396)
++|++++|+ +..| .++.+|+|||++++|+||+++|||+++||++++.+.+.++
T Consensus 167 ~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~l 222 (546)
T TIGR03222 167 GTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAER 222 (546)
T ss_pred ccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHH
Confidence 999999997 6788 8999999999999999999999999999998877654444
No 91
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.6e-37 Score=320.75 Aligned_cols=196 Identities=17% Similarity=0.172 Sum_probs=165.1
Q ss_pred CCCCCcEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-hCCCceEEEEEcCC-CCcccCCCc
Q 016043 8 NPDEQVVLGEEIGNVRLVTLNRP-------R---QLNVISSKVVSLLAEYLEKWE-KDDQAKLVIVKGVG-RAFSAGGDL 75 (396)
Q Consensus 8 ~~~~~~v~~e~~~~v~~itLnrP-------~---~lNal~~~m~~~L~~~l~~~~-~d~~v~~Vvl~G~G-~aFcaG~Dl 75 (396)
.+.++.+.++.+++|++|||||| + ++|+||.+|+.+|.+++++++ +|++|++|||+|.+ ++||+|+|+
T Consensus 11 ~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 11 PSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 35677899999999999999965 4 899999999999999999999 78999999999986 999999999
Q ss_pred hhhccCCCCch-hHHHHHHHH-HHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCC--ceeeccccc-cCccC
Q 016043 76 KMFYDGRNSKD-SCLEVVYRM-YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEK--TVFSTPEAS-IGFHT 150 (396)
Q Consensus 76 ~~l~~~~~~~~-~~~~~~~~~-~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~--a~f~~PE~~-iGl~P 150 (396)
+.+........ ....+.+.. ..+...+..+|||+||+|||+|+|||++|+++|||||++++ ++|++||++ +|++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P 170 (550)
T PRK08184 91 FMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLP 170 (550)
T ss_pred HhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCC
Confidence 98754211110 011111111 12445678899999999999999999999999999999987 899999997 99999
Q ss_pred CchHHHHHh--hccH-HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHH
Q 016043 151 DCGFSFIHS--RLPG-HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL 203 (396)
Q Consensus 151 d~G~s~~L~--rl~G-~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l 203 (396)
+.|++++|+ |++| .++.+|+|||++++|+||+++||++++||++++.+.+.++
T Consensus 171 ~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~ 226 (550)
T PRK08184 171 GTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAER 226 (550)
T ss_pred CcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHH
Confidence 999999998 7788 8999999999999999999999999999988776644433
No 92
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=99.96 E-value=7.9e-30 Score=214.63 Aligned_cols=117 Identities=44% Similarity=0.844 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 016043 232 VLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINI 311 (396)
Q Consensus 232 ~~~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~ 311 (396)
+..+++.|++||+++|++||+++|+. .+++||.++++.|.++||+|+++|.++++++...++++||++|+++..++
T Consensus 2 L~~~~~~I~~~F~~~s~~eI~~~L~~----~~~~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~ 77 (118)
T PF13766_consen 2 LAEHLEAIDRCFSADSVEEIIEALEA----DGDEWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRC 77 (118)
T ss_dssp CHHCHHHHHHHTTSSSHHHHHHHHHH----HS-HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHc----cCcHHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999 78899999999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhhcCCCCCCCCCCCCCCChHHHhcccC
Q 016043 312 LRAIISADIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQ 355 (396)
Q Consensus 312 ~~~~~~~d~~eGv~A~lidK~r~P~w~~~~l~~v~~~~v~~~f~ 355 (396)
+.+ +||.|||||.|||||++|+|+|+++++|++++|++||+
T Consensus 78 ~~~---~DF~EGVRA~LIDKd~~P~W~p~~l~~V~~~~V~~~f~ 118 (118)
T PF13766_consen 78 MRH---PDFAEGVRALLIDKDKNPKWSPASLEDVSDEDVDSFFE 118 (118)
T ss_dssp HCC---SCHHHHHHHHTTS-------SSSSCCCS-HHHHHHHCS
T ss_pred hcc---chHHHHHHHHHhcCCCCCCCCCCChHHCCHHHHHHHhC
Confidence 999 99999999999999999999999999999999999996
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.75 E-value=2.9e-18 Score=154.73 Aligned_cols=141 Identities=15% Similarity=0.037 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Q 016043 39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (396)
Q Consensus 39 ~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (396)
-.+.+|.++++.+++|++|++|||++ +|.|+|+... ...++++..+..++||+||++||.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~--------------~~~~~~i~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTAS--------------EVIRAELAAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHH--------------HHHHHHHHHHHhCCCCEEEEECCchh
Confidence 35789999999999999999999987 6999987643 12234566777899999999999999
Q ss_pred ccccccccCCCEEEEeCCceeeccccccCccCCchHHH--------HHhhccH---HHHHHHhhcCCCccHHHHHHcCcc
Q 016043 119 GGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSF--------IHSRLPG---HLGEFLALTGARLNGKELVAAGLA 187 (396)
Q Consensus 119 GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~--------~L~rl~G---~~a~~L~LTG~~l~a~eA~~~GLa 187 (396)
|||+.|+++||++++++++.|+.+.+..+.-+...... .+++..| .....++..|..++|++|++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999988777443322222 3334334 346678889999999999999999
Q ss_pred ceecCCCChH
Q 016043 188 THFVPSEKLP 197 (396)
Q Consensus 188 ~~~v~~~~l~ 197 (396)
|++.+.+++.
T Consensus 164 D~v~~~~e~~ 173 (177)
T cd07014 164 DSLGSFDDAV 173 (177)
T ss_pred ccCCCHHHHH
Confidence 9999866544
No 94
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.73 E-value=1.6e-17 Score=151.22 Aligned_cols=145 Identities=13% Similarity=0.129 Sum_probs=115.1
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016043 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (396)
Q Consensus 23 ~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (396)
.+|.|+ ..++..+...+.+.|+.+++|+ ++.|+|.= =|-||++..- ..+...|
T Consensus 2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~I----nSpGG~v~~~-----------------~~i~~~l 54 (187)
T cd07020 2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIEL----DTPGGLLDST-----------------REIVQAI 54 (187)
T ss_pred EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEE----ECCCCCHHHH-----------------HHHHHHH
Confidence 456665 3467788899999999998765 78888761 1445554431 1344456
Q ss_pred HhcCCeEEEEec---ccccccccccccCCCEEEEeCCceeeccccccCccCCc--------------hHHHHHhhccHH-
Q 016043 103 HTYKKTQVALAH---GITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDC--------------GFSFIHSRLPGH- 164 (396)
Q Consensus 103 ~~~~kP~IA~v~---G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~--------------G~s~~L~rl~G~- 164 (396)
..+|||+||+|+ |+|+|||+.|+++||+||++++++|+++++..|..+.. +....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999 99999999999999999999999999999985554432 244567887773
Q ss_pred --HHHHHhhcCCCccHHHHHHcCccceecCCC
Q 016043 165 --LGEFLALTGARLNGKELVAAGLATHFVPSE 194 (396)
Q Consensus 165 --~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~ 194 (396)
.+..++++|+.++|+||+++||+|+++++.
T Consensus 135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred HHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 788999999999999999999999999875
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.55 E-value=8.4e-15 Score=135.85 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 016043 35 VISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAH 114 (396)
Q Consensus 35 al~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~ 114 (396)
..+..++.+|.++|+.+..||+|++|||+ .||+|+|+..+. ..++.+..+..++||+||+++
T Consensus 17 ~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~--------------~~~~~l~~~~~~~kpVia~v~ 78 (211)
T cd07019 17 TQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE--------------VIRAELAAARAAGKPVVVSAG 78 (211)
T ss_pred CCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH--------------HHHHHHHHHHhCCCCEEEEEC
Confidence 33556789999999999999999999997 899999997752 113345667888999999999
Q ss_pred ccccccccccccCCCEEEEeCCceee
Q 016043 115 GITMGGGASLMVPLKFSVVTEKTVFS 140 (396)
Q Consensus 115 G~a~GGG~~lal~~d~rIate~a~f~ 140 (396)
|.|.|+|+.|+++||++++++.+.|+
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~a~~g 104 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPSTLTG 104 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCCCEEE
Confidence 99999999999999999999999887
No 96
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.47 E-value=3.3e-13 Score=119.60 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecc
Q 016043 36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG 115 (396)
Q Consensus 36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G 115 (396)
++..|+.+|.+.|+.++.|+.++.|+|+. .|.|+|+... ..+...|..++||+||.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-----------------~~i~~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-----------------MNIVDALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-----------------HHHHHHHHHhCCCEEEEECC
Confidence 56688999999999999999999999975 4788876542 23445677788999999999
Q ss_pred cccccccccccCCCEEEEeCCceeeccccccCccCCc----------hHHHHHhhccH----------HHHHHHhhcCCC
Q 016043 116 ITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDC----------GFSFIHSRLPG----------HLGEFLALTGAR 175 (396)
Q Consensus 116 ~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~----------G~s~~L~rl~G----------~~a~~L~LTG~~ 175 (396)
.|.++|+.|+++||.|++++++.|+......+..... .-..+..++.. .....++.+|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988876654322 00011122222 124566678999
Q ss_pred ccHHHHHHcCcccee
Q 016043 176 LNGKELVAAGLATHF 190 (396)
Q Consensus 176 l~a~eA~~~GLa~~~ 190 (396)
++++||++.||||++
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
No 97
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.46 E-value=1.5e-13 Score=145.01 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=119.8
Q ss_pred EeCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHH
Q 016043 18 EIGNVRLVTLNRPRQ--LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRM 95 (396)
Q Consensus 18 ~~~~v~~itLnrP~~--lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~ 95 (396)
.+++|++|+++.+=. .|..+....+.+.+.|+.+..|++|++|||+-. |.||+.-.. ...
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as--------------e~i 367 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS--------------EII 367 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH--------------HHH
Confidence 467899999987642 344444456788899999999999999999954 223322110 111
Q ss_pred HHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCcee------eccc------cccCccCCchHHHHHhh---
Q 016043 96 YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVF------STPE------ASIGFHTDCGFSFIHSR--- 160 (396)
Q Consensus 96 ~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f------~~PE------~~iGl~Pd~G~s~~L~r--- 160 (396)
++.+..+...+||+||.|+|.|.+||..++++||.++|++.|.+ +++. .++|+.|++..+..+.+
T Consensus 368 ~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~ 447 (584)
T TIGR00705 368 RRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSL 447 (584)
T ss_pred HHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCC
Confidence 23444466678999999999999999999999999999999977 7773 68999998887765553
Q ss_pred -------------------------ccH-HH-----HHHHhhcCCCccHHHHHHcCccceecC
Q 016043 161 -------------------------LPG-HL-----GEFLALTGARLNGKELVAAGLATHFVP 192 (396)
Q Consensus 161 -------------------------l~G-~~-----a~~L~LTG~~l~a~eA~~~GLa~~~v~ 192 (396)
.++ .+ ....+++|+.++|+||+++||||++-.
T Consensus 448 ~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~ 510 (584)
T TIGR00705 448 LRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG 510 (584)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC
Confidence 344 33 667889999999999999999999953
No 98
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.43 E-value=9.2e-13 Score=122.47 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=75.0
Q ss_pred cCCCCCCCC-CHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcC
Q 016043 28 NRPRQLNVI-SSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYK 106 (396)
Q Consensus 28 nrP~~lNal-~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 106 (396)
++|..+|++ +..|+.+|.++|+.+++|++|++|||+. +|.|+++... . ..++.+..+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------~----~l~~~l~~~~~-~ 73 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------F----ELADAIRAARA-G 73 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------H----HHHHHHHHHhc-C
Confidence 567667764 5789999999999999999999999975 5677765432 1 11222223333 5
Q ss_pred CeEEEEecccccccccccccCCCEEEEeCCceeec
Q 016043 107 KTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST 141 (396)
Q Consensus 107 kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~ 141 (396)
||+||+++|.|.|||+.|+++||++++++.+.|+.
T Consensus 74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~ 108 (214)
T cd07022 74 KPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGS 108 (214)
T ss_pred CCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEe
Confidence 99999999999999999999999999999998754
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.34 E-value=3.7e-12 Score=112.97 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Q 016043 39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (396)
Q Consensus 39 ~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (396)
.+...+.+.|+.++.++.+ .+.|.+.| |++.. ...+...|..++||+|++++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspG------G~~~~-----------------~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPG------GDVFA-----------------GLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCC------CCHHH-----------------HHHHHHHHHhcCCCEEEEEcchHH
Confidence 5677888888888887443 44445444 44321 134666788899999999999999
Q ss_pred ccccccccCCCEEEEeCCceeeccccccCccCCchHH---------------HHHhhccH---HHHHHHhhcCCCccHHH
Q 016043 119 GGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS---------------FIHSRLPG---HLGEFLALTGARLNGKE 180 (396)
Q Consensus 119 GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s---------------~~L~rl~G---~~a~~L~LTG~~l~a~e 180 (396)
|+|+.|+++||+|++++++.|.++....|..+..... ..+++..| .....++.++..++++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 9999999999999999999999988776665543222 22555556 34555656667899999
Q ss_pred HHHcCcccee
Q 016043 181 LVAAGLATHF 190 (396)
Q Consensus 181 A~~~GLa~~~ 190 (396)
|+++||+|++
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999975
No 100
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.33 E-value=6.3e-12 Score=116.32 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=80.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016043 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (396)
Q Consensus 22 v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (396)
|++|.++-+=... ...|+.+|.++|+.++.|+++++|+|++ +|.|+|+.... ..++.+..
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~--------------~i~~~i~~ 61 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE--------------EIYREIRR 61 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH--------------HHHHHHHH
Confidence 4566665331100 3789999999999999999999999988 48899986521 12345566
Q ss_pred HHhcCCeEEEEecccccccccccccCCCEEEEeCCceeec
Q 016043 102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFST 141 (396)
Q Consensus 102 i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~ 141 (396)
+..++||+||+++|.|.|+|+.|+++||++++++.+.|+.
T Consensus 62 ~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~ 101 (208)
T cd07023 62 LRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGS 101 (208)
T ss_pred HHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEe
Confidence 7788999999999999999999999999999999998853
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.23 E-value=4.5e-11 Score=110.60 Aligned_cols=149 Identities=14% Similarity=0.166 Sum_probs=101.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016043 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (396)
Q Consensus 22 v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (396)
|++|+++.+=. ....+|.++|+.+.+|+++++|||++. |.|+|+... ..+...
T Consensus 2 v~vi~i~g~i~------~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-----------------~~l~~~ 54 (207)
T TIGR00706 2 IAILPVSGAIA------VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-----------------EEIYEK 54 (207)
T ss_pred EEEEEEEEEEe------cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-----------------HHHHHH
Confidence 55666654321 235788999999999999999999875 788887643 223445
Q ss_pred HHhcC--CeEEEEecccccccccccccCCCEEEEeCCceeecccc------------ccCccCC---------chHH---
Q 016043 102 IHTYK--KTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEA------------SIGFHTD---------CGFS--- 155 (396)
Q Consensus 102 i~~~~--kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~------------~iGl~Pd---------~G~s--- 155 (396)
|..++ ||+||+++|.|.|||+.|+++||.+++++++.|+.--+ ++|+-+. .+..
T Consensus 55 i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~ 134 (207)
T TIGR00706 55 LKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRE 134 (207)
T ss_pred HHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCC
Confidence 55565 99999999999999999999999999999988654222 2333210 0000
Q ss_pred ------HHHhhcc---------------H--HHHHHHhhcCCCccHHHHHHcCccceecCCCChH
Q 016043 156 ------FIHSRLP---------------G--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLP 197 (396)
Q Consensus 156 ------~~L~rl~---------------G--~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~ 197 (396)
-.+.++. | .-...=++.|+.+++++|++.||||.+...+++.
T Consensus 135 ~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~ 199 (207)
T TIGR00706 135 LTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDAL 199 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHH
Confidence 0111111 1 1111223678999999999999999998655544
No 102
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.11 E-value=7e-10 Score=100.13 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016043 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (396)
Q Consensus 23 ~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (396)
.+|.++. .+++.+...|.+.|+++++++ ++.|+|.=. |-||++... ..+...|
T Consensus 2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~~-----------------~~I~~~l 54 (178)
T cd07021 2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDSA-----------------LEIVDLI 54 (178)
T ss_pred EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHHH-----------------HHHHHHH
Confidence 3455553 467788889999999999986 677777522 334444321 3456677
Q ss_pred HhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchH--------HHH------HhhccH---HH
Q 016043 103 HTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGF--------SFI------HSRLPG---HL 165 (396)
Q Consensus 103 ~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~--------s~~------L~rl~G---~~ 165 (396)
..+++|+|++|+|.|.|+|+-|+++||++++++++.|+.++. ++..|+ +.. +...-| ..
T Consensus 55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~ 130 (178)
T cd07021 55 LNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDI 130 (178)
T ss_pred HhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 889999999999999999999999999999999999998844 333333 222 111223 23
Q ss_pred HHHHhhcC-------------CCccHHHHHHcCccceecCC
Q 016043 166 GEFLALTG-------------ARLNGKELVAAGLATHFVPS 193 (396)
Q Consensus 166 a~~L~LTG-------------~~l~a~eA~~~GLa~~~v~~ 193 (396)
+..|+--. -.++++||++.|+++.++++
T Consensus 131 a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 131 AEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 33443332 26999999999999999864
No 103
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.08 E-value=5.6e-10 Score=104.41 Aligned_cols=90 Identities=19% Similarity=0.076 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016043 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA 113 (396)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v 113 (396)
+.-+..++.+|.+.|+++.+|++|++|||+..+..| ++.++.++ ++.+..+...+||+||.+
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-----------------~~~i~~~~~~~kpVia~~ 85 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-----------------RQALERFRASGKPVIAYA 85 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-----------------HHHHHHHHHhCCeEEEEe
Confidence 334578899999999999999999999999988666 66666554 234445566799999999
Q ss_pred cccccccccccccCCCEEEEeCCceeecc
Q 016043 114 HGITMGGGASLMVPLKFSVVTEKTVFSTP 142 (396)
Q Consensus 114 ~G~a~GGG~~lal~~d~rIate~a~f~~P 142 (396)
+| +.+||+.|+++||.+++.+.+.|+..
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~i 113 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELT 113 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEee
Confidence 98 88999999999999999999999884
No 104
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.56 E-value=2.5e-07 Score=82.37 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecc
Q 016043 36 ISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG 115 (396)
Q Consensus 36 l~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G 115 (396)
++..+...+...|..++.++.++.|+|.=. |.||++.. ...+...|..+++|+++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-----------------~~~i~~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-----------------GMAIYDTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-----------------HHHHHHHHHhcCCCceEEEEe
Confidence 568899999999999999877777776522 44555421 134556677789999999999
Q ss_pred cccccccccccCCC--EEEEeCCceeeccccccCccCCchHHHH----Hh-----------hccH---HHHHHHhhcCCC
Q 016043 116 ITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSFI----HS-----------RLPG---HLGEFLALTGAR 175 (396)
Q Consensus 116 ~a~GGG~~lal~~d--~rIate~a~f~~PE~~iGl~Pd~G~s~~----L~-----------rl~G---~~a~~L~LTG~~ 175 (396)
.|.++|.-|+++|| .|++.+++.|.+....-|......-... +- +.-| ..-..++-.+..
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 147 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTW 147 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcc
Confidence 99999999999999 5777777666543322111100000000 11 1112 122233345566
Q ss_pred ccHHHHHHcCcccee
Q 016043 176 LNGKELVAAGLATHF 190 (396)
Q Consensus 176 l~a~eA~~~GLa~~~ 190 (396)
++|+||++.||||++
T Consensus 148 ~sa~eA~~~GliD~i 162 (162)
T cd07013 148 LSAREAVEYGFADTI 162 (162)
T ss_pred ccHHHHHHcCCCCcC
Confidence 799999999999975
No 105
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.55 E-value=5.1e-07 Score=83.08 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=89.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016043 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (396)
Q Consensus 22 v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (396)
-++|.|+.| ++..+...+...|..++.++..+-|.|.=. |-|||+.. ...+...
T Consensus 31 ~rii~i~g~-----I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~-----------------g~~I~d~ 84 (200)
T PRK00277 31 ERIIFLGGE-----VEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-----------------GLAIYDT 84 (200)
T ss_pred CcEEEECCE-----ECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHH-----------------HHHHHHH
Confidence 456666644 689999999999998887643333333211 33444322 1234455
Q ss_pred HHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHH-----------HH-----------Hh
Q 016043 102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS-----------FI-----------HS 159 (396)
Q Consensus 102 i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s-----------~~-----------L~ 159 (396)
|...+.|+++.+.|.|.+.|.-|++++ +++.+|++|++.+++++..+++ .. ++
T Consensus 85 i~~~~~~v~t~~~G~aaS~a~~I~~ag-----~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a 159 (200)
T PRK00277 85 MQFIKPDVSTICIGQAASMGAFLLAAG-----AKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILA 159 (200)
T ss_pred HHhcCCCEEEEEEeEeccHHHHHHhcC-----CCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999999999999998873 3344555566666665443321 11 11
Q ss_pred hccH---HHHHHHhhcCCCccHHHHHHcCccceecCC
Q 016043 160 RLPG---HLGEFLALTGARLNGKELVAAGLATHFVPS 193 (396)
Q Consensus 160 rl~G---~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~ 193 (396)
..-| .....++-.+..++|+||++.||+|+++.+
T Consensus 160 ~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 160 EHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 1112 223334445668999999999999999975
No 106
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.51 E-value=1.1e-07 Score=92.87 Aligned_cols=176 Identities=16% Similarity=0.058 Sum_probs=141.8
Q ss_pred EEEEEeC--CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccCCCCchhHHH
Q 016043 14 VLGEEIG--NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDGRNSKDSCLE 90 (396)
Q Consensus 14 v~~e~~~--~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~~~~~~~~~~ 90 (396)
.+++..+ +++.+.++ |++ |..|.+...+|..-|+.++.+..+++.++++.. +.|+||.|..+.+-+...- ...
T Consensus 57 ~L~~~~Dy~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f--spa 132 (380)
T KOG1683|consen 57 NLVETLDYTGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF--SPA 132 (380)
T ss_pred hccccccccccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc--CHH
Confidence 4455555 78888888 776 999999999999999999999999999999998 9999999999987654321 256
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecccccccc--cccccCCCEEEEe--CCceeeccccccCc-cCCchHHHHHhhccHHH
Q 016043 91 VVYRMYWLCHHIHTYKKTQVALAHGITMGGG--ASLMVPLKFSVVT--EKTVFSTPEASIGF-HTDCGFSFIHSRLPGHL 165 (396)
Q Consensus 91 ~~~~~~~l~~~i~~~~kP~IA~v~G~a~GGG--~~lal~~d~rIat--e~a~f~~PE~~iGl-~Pd~G~s~~L~rl~G~~ 165 (396)
++....+++....+++.|+.+++||.+--|| |-++-+|.|||.- ..-..+..++..++ .|.+=--.+.+.++-..
T Consensus 133 ~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~ 212 (380)
T KOG1683|consen 133 HWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRV 212 (380)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccc
Confidence 6777888999999999999999999999898 8889999999997 44445678888774 34333333333332266
Q ss_pred HHHHhhcCCCccHHHHHHcCccceecCC
Q 016043 166 GEFLALTGARLNGKELVAAGLATHFVPS 193 (396)
Q Consensus 166 a~~L~LTG~~l~a~eA~~~GLa~~~v~~ 193 (396)
|..-+--|.-++-.||++-|+++.+.|.
T Consensus 213 g~~~L~d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 213 GERALADGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred cHHHHhhccCccHHHHHhhccchhccch
Confidence 6666677889999999999999999986
No 107
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.47 E-value=1.9e-06 Score=77.29 Aligned_cols=137 Identities=14% Similarity=0.199 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEec
Q 016043 35 VISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAH 114 (396)
Q Consensus 35 al~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~ 114 (396)
.+++.+...|.+.++.+++| .++.|+|.=. |-||++... ..+...|...++|+++.++
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-----------------~~I~~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-----------------GNIVQRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-----------------HHHHHHHHhcCcCEEEEEe
Confidence 36778888889999988875 5677777522 445554431 1234455668999999999
Q ss_pred ---ccccccccccccCCCEEEEeCCceeeccccccCccCC----ch----HHHHHhhc------cH---HHHHHHhhcCC
Q 016043 115 ---GITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTD----CG----FSFIHSRL------PG---HLGEFLALTGA 174 (396)
Q Consensus 115 ---G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd----~G----~s~~L~rl------~G---~~a~~L~LTG~ 174 (396)
|.|..+|.-++++||.+++.+++.++....-.|..++ .. -++.+.++ -| ..+..+.--..
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~ 146 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL 146 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence 9999999999999999999999999987764333220 10 12222222 12 24455555667
Q ss_pred CccHHHHHHcCccceecCC
Q 016043 175 RLNGKELVAAGLATHFVPS 193 (396)
Q Consensus 175 ~l~a~eA~~~GLa~~~v~~ 193 (396)
.++++||++.|++|+++.+
T Consensus 147 ~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 147 SLTPEEALKYGVIEVVARD 165 (172)
T ss_pred CcCHHHHHHcCCceeeeCC
Confidence 7999999999999999975
No 108
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.26 E-value=1.1e-05 Score=74.63 Aligned_cols=144 Identities=16% Similarity=0.102 Sum_probs=97.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016043 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (396)
Q Consensus 22 v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (396)
-+.|.|+. -++..+...+...|..++..+..+.|.|.=. |-||++..- ..+...
T Consensus 35 ~r~I~l~g-----~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-----------------~~I~d~ 88 (207)
T PRK12553 35 ERIIFLGG-----QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-----------------DAIYDT 88 (207)
T ss_pred CeEEEEcc-----eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-----------------HHHHHH
Confidence 45566664 3689999999999999987653344443211 344554321 245566
Q ss_pred HHhcCCeEEEEecccccccccccccCCC--EEEEeCCceeecccccc-CccCCchHH------------------HHHhh
Q 016043 102 IHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASI-GFHTDCGFS------------------FIHSR 160 (396)
Q Consensus 102 i~~~~kP~IA~v~G~a~GGG~~lal~~d--~rIate~a~f~~PE~~i-Gl~Pd~G~s------------------~~L~r 160 (396)
|..++.|+++.+.|.|.+.|.-|.++|| .|++.++++|.+..... |.. .|-. ..+.+
T Consensus 89 i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~ 166 (207)
T PRK12553 89 IQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAE 166 (207)
T ss_pred HHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999999999999998 58999998888766543 211 1111 11122
Q ss_pred ccH---HHHHHHhhcCCCccHHHHHHcCccceecCC
Q 016043 161 LPG---HLGEFLALTGARLNGKELVAAGLATHFVPS 193 (396)
Q Consensus 161 l~G---~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~ 193 (396)
.-| .....++-.+..++|+||++.||+|+++.+
T Consensus 167 ~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 167 HTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence 222 233334446788999999999999999965
No 109
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.19 E-value=1.1e-05 Score=72.49 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=97.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016043 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (396)
Q Consensus 23 ~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (396)
++|.|+-| ++..+...+...|..+..++..+.|+|.=. |-|||+..- ..+...|
T Consensus 10 r~i~i~g~-----I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-----------------~~i~~~l 63 (171)
T cd07017 10 RIIFLGGP-----IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-----------------LAIYDTM 63 (171)
T ss_pred cEEEEcCE-----EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-----------------HHHHHHH
Confidence 45666654 578899999999999998766555555422 344443321 2344556
Q ss_pred HhcCCeEEEEecccccccccccccCCC--EEEEeCCceeeccccccCccCCchHHHH------H-----------hhccH
Q 016043 103 HTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSFI------H-----------SRLPG 163 (396)
Q Consensus 103 ~~~~kP~IA~v~G~a~GGG~~lal~~d--~rIate~a~f~~PE~~iGl~Pd~G~s~~------L-----------~rl~G 163 (396)
..++.|+++.+.|.|.++|.-++++|| .|++.+++.|.+.+...+..-. ..-. + ...-|
T Consensus 64 ~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg 141 (171)
T cd07017 64 QYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTG 141 (171)
T ss_pred HhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 677999999999999999999999999 8999999999988876554322 1111 1 11112
Q ss_pred ---HHHHHHhhcCCCccHHHHHHcCcccee
Q 016043 164 ---HLGEFLALTGARLNGKELVAAGLATHF 190 (396)
Q Consensus 164 ---~~a~~L~LTG~~l~a~eA~~~GLa~~~ 190 (396)
..-..++-.+..++++||++.||+|++
T Consensus 142 ~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 142 QPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 122233346777999999999999975
No 110
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.18 E-value=0.00012 Score=69.73 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=94.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016043 33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL 112 (396)
Q Consensus 33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~ 112 (396)
.-+++++-.+.....++.+++. .+-+|-|-=+++++. |.+-. . ....+...++...+...+.|+|++
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE--------~---~G~~~~ia~~~~~~s~~~VP~IsV 142 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE--------E---RGQGEAIARNLMEMSDLKVPIIAI 142 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH--------h---ccHHHHHHHHHHHHhCCCCCEEEE
Confidence 4678899999999999988875 455555543333443 22211 0 112334456677788899999999
Q ss_pred ecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH--HH-HHHHhhcCCCccHHHHHHcCccce
Q 016043 113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--HL-GEFLALTGARLNGKELVAAGLATH 189 (396)
Q Consensus 113 v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G--~~-a~~L~LTG~~l~a~eA~~~GLa~~ 189 (396)
|-|.|.|||.-....||++++.+++.|+. .++-|++..|-|-.. .. +.++ .+++.++.+.|+||+
T Consensus 143 I~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~-----~~~a~~l~~~g~iD~ 210 (256)
T PRK12319 143 IIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM-----KITAGELLEMGVVDK 210 (256)
T ss_pred EeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc-----CCCHHHHHHCCCCcE
Confidence 99999888887778999999998876654 333344444433211 22 3333 779999999999999
Q ss_pred ecCCC
Q 016043 190 FVPSE 194 (396)
Q Consensus 190 ~v~~~ 194 (396)
+||..
T Consensus 211 ii~e~ 215 (256)
T PRK12319 211 VIPEH 215 (256)
T ss_pred ecCCC
Confidence 99864
No 111
>PRK10949 protease 4; Provisional
Probab=98.14 E-value=2.2e-05 Score=83.65 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=101.0
Q ss_pred eCCEEEEEEcC-----CCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHH
Q 016043 19 IGNVRLVTLNR-----PRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVY 93 (396)
Q Consensus 19 ~~~v~~itLnr-----P~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~ 93 (396)
.+.|++|+++- ....+.++. +.+.+.|+++.+|++|++|||+=. |-||.... ..
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrIn----SpGGs~~a--------------se 383 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVN----SPGGSVTA--------------SE 383 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEec----CCCCcHHH--------------HH
Confidence 46788888863 222234444 567888999999999999999854 23333221 11
Q ss_pred HHHHHHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccc------------cccCccCCchHH------
Q 016043 94 RMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPE------------ASIGFHTDCGFS------ 155 (396)
Q Consensus 94 ~~~~l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE------------~~iGl~Pd~G~s------ 155 (396)
..++.+..+....||+||.+.|.|--||.-++++||.++|.+.|..+--- -++|+-+++-.+
T Consensus 384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 22334444556789999999999999999999999999999977543311 124443321111
Q ss_pred -----------------------HHHhhcc-----HHHHHHHhhcCCCccHHHHHHcCccceecCCCChHH
Q 016043 156 -----------------------FIHSRLP-----GHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPE 198 (396)
Q Consensus 156 -----------------------~~L~rl~-----G~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~ 198 (396)
.|+.+.. -.--..-+..|+.++|.+|++.||||++-.-++..+
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~ 534 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 534 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHH
Confidence 0111110 000112245899999999999999999975444433
No 112
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.12 E-value=0.00026 Score=69.20 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=93.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016043 32 QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA 111 (396)
Q Consensus 32 ~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 111 (396)
..-+++++-.+.....++.+++. .+-+|-|--.+++++ |.+-.. ....+...+..+.+.....|+|+
T Consensus 131 ~~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~-----------~G~~~aiar~l~~~a~~~VP~Is 197 (322)
T CHL00198 131 NFGMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEK-----------LGQGEAIAVNLREMFSFEVPIIC 197 (322)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHH-----------HhHHHHHHHHHHHHHcCCCCEEE
Confidence 35678899999999999988875 455555543334444 211110 11223345566677889999999
Q ss_pred EecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhcCCCccHHHHHHcCccceec
Q 016043 112 LAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191 (396)
Q Consensus 112 ~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~l~a~eA~~~GLa~~~v 191 (396)
+|-|.+-|||+-....||++++.+++.|+. +-|. |++-.|-|-.. ++.. +-..-++++.|.++.|++|+++
T Consensus 198 VViGeggsGGAlal~~aD~V~m~e~a~~sV------isPE-g~a~Il~~d~~-~a~~-aA~~~~ita~dL~~~giiD~ii 268 (322)
T CHL00198 198 TIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPE-ACAAILWKDSK-KSLD-AAEALKITSEDLKVLGIIDEII 268 (322)
T ss_pred EEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHH-HHHHHHhcchh-hHHH-HHHHcCCCHHHHHhCCCCeEec
Confidence 999999888865555699999999987664 2344 44444544322 1111 1233478899999999999999
Q ss_pred CCC
Q 016043 192 PSE 194 (396)
Q Consensus 192 ~~~ 194 (396)
|.-
T Consensus 269 ~Ep 271 (322)
T CHL00198 269 PEP 271 (322)
T ss_pred cCC
Confidence 853
No 113
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.09 E-value=0.00043 Score=67.63 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=92.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016043 32 QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA 111 (396)
Q Consensus 32 ~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 111 (396)
..-+++++-.+.....++.+++- .+-+|-|--.+++++ |.+... ....+...++.+.+.....|+|+
T Consensus 128 ~~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-----------~G~~~aia~~l~a~s~~~VP~Is 194 (316)
T TIGR00513 128 NFGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-----------RGQSEAIARNLREMARLGVPVIC 194 (316)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-----------HHHHHHHHHHHHHHHcCCCCEEE
Confidence 34678899999999999888875 455555543333443 221111 12234445677778889999999
Q ss_pred EecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH---HHHHHHhhcCCCccHHHHHHcCccc
Q 016043 112 LAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG---HLGEFLALTGARLNGKELVAAGLAT 188 (396)
Q Consensus 112 ~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G---~~a~~L~LTG~~l~a~eA~~~GLa~ 188 (396)
+|-|.+-|||.-....||++++.+++.++ +.++-|++-.|-|-.. ..+.+ ..+++.++.+.|++|
T Consensus 195 VViGeggsGGAla~~~aD~v~m~~~a~~s-------VisPEg~a~Il~kd~~~a~~aae~-----~~~ta~~l~~~G~iD 262 (316)
T TIGR00513 195 TVIGEGGSGGALAIGVGDKVNMLEYSTYS-------VISPEGCAAILWKDASKAPKAAEA-----MKITAPDLKELGLID 262 (316)
T ss_pred EEecccccHHHhhhccCCEEEEecCceEE-------ecCHHHHHHHhccchhhHHHHHHH-----ccCCHHHHHHCCCCe
Confidence 99999977776544569999888887654 4444455555544321 23444 456799999999999
Q ss_pred eecCCC
Q 016043 189 HFVPSE 194 (396)
Q Consensus 189 ~~v~~~ 194 (396)
.+||.-
T Consensus 263 ~II~ep 268 (316)
T TIGR00513 263 SIIPEP 268 (316)
T ss_pred EeccCC
Confidence 999853
No 114
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.07 E-value=1.6e-05 Score=71.85 Aligned_cols=143 Identities=19% Similarity=0.240 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCce--EEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHH
Q 016043 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAK--LVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCH 100 (396)
Q Consensus 23 ~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~--~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~ 100 (396)
++|.|+.| +|.++...+...|..++..+..+ .|.|. |-|||+.. ...+..
T Consensus 17 r~i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~-----------------g~~i~~ 68 (182)
T PF00574_consen 17 RIIFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDA-----------------GLAIYD 68 (182)
T ss_dssp TEEEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHH-----------------HHHHHH
T ss_pred eEEEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHH-----------------HHHHHH
Confidence 35666655 68999999999998885433322 22333 34566532 135667
Q ss_pred HHHhcCCeEEEEecccccccccccccCCCE--EEEeCCceeeccccccCccCCchHH----HHHhhccHH-HH-------
Q 016043 101 HIHTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFS----FIHSRLPGH-LG------- 166 (396)
Q Consensus 101 ~i~~~~kP~IA~v~G~a~GGG~~lal~~d~--rIate~a~f~~PE~~iGl~Pd~G~s----~~L~rl~G~-~a------- 166 (396)
.|..++.|+++.+.|.|.+.|.-+.++|+. |++.+++.|.+.+...+..-...-. -.|.++-.. ..
T Consensus 69 ~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg 148 (182)
T PF00574_consen 69 AIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTG 148 (182)
T ss_dssp HHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 788899999999999999999999999999 9999999999988866553311111 011111111 11
Q ss_pred ------HHHhhcCCCccHHHHHHcCccceecCC
Q 016043 167 ------EFLALTGARLNGKELVAAGLATHFVPS 193 (396)
Q Consensus 167 ------~~L~LTG~~l~a~eA~~~GLa~~~v~~ 193 (396)
..++-....++++||++.||+|+++.+
T Consensus 149 ~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 149 LSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp S-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred CcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 122223345899999999999999854
No 115
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.05 E-value=5e-05 Score=69.73 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=93.1
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHH
Q 016043 21 NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCH 100 (396)
Q Consensus 21 ~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~ 100 (396)
.-+.|.|..+ ++..+...+...|..++..+..+.|.|.=. |-||++.. ...+..
T Consensus 22 ~~r~I~i~g~-----I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a-----------------g~aI~d 75 (197)
T PRK14512 22 KSRSIVIAGE-----INKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA-----------------GFAIFN 75 (197)
T ss_pred cCcEEEECCE-----EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-----------------HHHHHH
Confidence 3455666543 678899999999988887333344444311 34455432 124555
Q ss_pred HHHhcCCeEEEEecccccccccccccCCCE--EEEeCCceeeccccccCccCCchH----HHHHhhcc-----------H
Q 016043 101 HIHTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGF----SFIHSRLP-----------G 163 (396)
Q Consensus 101 ~i~~~~kP~IA~v~G~a~GGG~~lal~~d~--rIate~a~f~~PE~~iGl~Pd~G~----s~~L~rl~-----------G 163 (396)
.|...+.||++.++|.|.+.|.-|+++||- |++.++++|.+....-|+.....- .-.+-++. |
T Consensus 76 ~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg 155 (197)
T PRK14512 76 MIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETG 155 (197)
T ss_pred HHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 677789999999999999999999999985 899998888654443222111110 00111111 1
Q ss_pred ---HHHHHHhhcCCCccHHHHHHcCccceecCC
Q 016043 164 ---HLGEFLALTGARLNGKELVAAGLATHFVPS 193 (396)
Q Consensus 164 ---~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~ 193 (396)
.....++-....++++||++.||+|+++++
T Consensus 156 ~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 156 QELDKVEKDTDRDFWLDSSSAVKYGLVFEVVET 188 (197)
T ss_pred cCHHHHHHhhhcCcccCHHHHHHcCCccEeecC
Confidence 122223333456999999999999999975
No 116
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.04 E-value=6.7e-05 Score=69.02 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=97.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016043 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (396)
Q Consensus 22 v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (396)
-++|.|+-| +|.++...|...|-.++.++..+-|.|.=. |-|||+.+ ...++..
T Consensus 30 ~Riifl~~~-----i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-----------------g~aIyd~ 83 (200)
T CHL00028 30 ERLLFLGQE-----VDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-----------------GLAIYDT 83 (200)
T ss_pred CCEEEECCe-----ecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-----------------HHHHHHH
Confidence 356777765 799999999999999885443343333211 33444321 1345566
Q ss_pred HHhcCCeEEEEecccccccccccccCCC--EEEEeCCceeeccccccCccCCchHHHH------Hhhcc-----------
Q 016043 102 IHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFSFI------HSRLP----------- 162 (396)
Q Consensus 102 i~~~~kP~IA~v~G~a~GGG~~lal~~d--~rIate~a~f~~PE~~iGl~Pd~G~s~~------L~rl~----------- 162 (396)
|...+.|+.+.+.|.|.+.|.-|.++++ .|++.++++|.+.....|+.-+ -++-+ |-++-
T Consensus 84 m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G-~a~di~~~a~~l~~~~~~~~~~ya~~T 162 (200)
T CHL00028 84 MQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEG-QASEFVLEAEELLKLRETITRVYAQRT 162 (200)
T ss_pred HHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999998 6999999998887765553211 11111 11111
Q ss_pred H---HHHHHHhhcCCCccHHHHHHcCccceecCCC
Q 016043 163 G---HLGEFLALTGARLNGKELVAAGLATHFVPSE 194 (396)
Q Consensus 163 G---~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~ 194 (396)
| ..-..+.-....++|+||++.||+|+++.+.
T Consensus 163 g~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 163 GKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecC
Confidence 1 1122333344569999999999999998654
No 117
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.00 E-value=9.1e-05 Score=67.70 Aligned_cols=146 Identities=16% Similarity=0.099 Sum_probs=94.8
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHH
Q 016043 21 NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCH 100 (396)
Q Consensus 21 ~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~ 100 (396)
.-++|.|+-| ++..+...+...|..++.++..+-|.|.=. |-|||+.. ...+..
T Consensus 25 ~~riI~l~g~-----I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~-----------------g~~I~d 78 (191)
T TIGR00493 25 KERIIFLSGE-----VNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITA-----------------GLAIYD 78 (191)
T ss_pred cCeEEEEccE-----EChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHH-----------------HHHHHH
Confidence 4566777655 678888999999988887654444444311 33555421 123445
Q ss_pred HHHhcCCeEEEEecccccccccccccCCC--EEEEeCCceeeccccccCccCCchHH----HHHhhcc-----------H
Q 016043 101 HIHTYKKTQVALAHGITMGGGASLMVPLK--FSVVTEKTVFSTPEASIGFHTDCGFS----FIHSRLP-----------G 163 (396)
Q Consensus 101 ~i~~~~kP~IA~v~G~a~GGG~~lal~~d--~rIate~a~f~~PE~~iGl~Pd~G~s----~~L~rl~-----------G 163 (396)
.|..++.|+...+.|.|.+.|.-|+++++ .|++.++++|.+.+..-|......-. -.|.++- |
T Consensus 79 ~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg 158 (191)
T TIGR00493 79 TMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTG 158 (191)
T ss_pred HHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56667778888899999999988888766 69999999988866543332111111 1112211 2
Q ss_pred ---HHHHHHhhcCCCccHHHHHHcCccceecC
Q 016043 164 ---HLGEFLALTGARLNGKELVAAGLATHFVP 192 (396)
Q Consensus 164 ---~~a~~L~LTG~~l~a~eA~~~GLa~~~v~ 192 (396)
.....++-.+..++|+||++.||+|+++.
T Consensus 159 ~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 159 QSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 22333444566799999999999999874
No 118
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.99 E-value=0.00071 Score=66.24 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016043 33 LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL 112 (396)
Q Consensus 33 lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~ 112 (396)
.-+++++-.+.....++.+++- .+-+|-|-=++++++ |.+-.. ....+...++.+.+.....|+|++
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-----------~G~~~aia~~l~~~a~~~VP~IsV 195 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-----------RGQSEAIARNLREMARLKVPIICT 195 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-----------ccHHHHHHHHHHHHhCCCCCEEEE
Confidence 4678899999999999888875 556666654434444 222110 112344456777888999999999
Q ss_pred ecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhcCCCccHHHHHHcCccceecC
Q 016043 113 AHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFVP 192 (396)
Q Consensus 113 v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~l~a~eA~~~GLa~~~v~ 192 (396)
|-|.+.|||.-....||++++.+++.| ++.++-|++-.|-|-.. .+...+ ....+++.++.+.|++|.++|
T Consensus 196 IiGeg~sGGAla~~~aD~v~m~~~A~~-------svisPEg~a~Il~~~~~-~a~~aa-e~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 196 VIGEGGSGGALAIGVGDRVLMLEYSTY-------SVISPEGCASILWKDAS-KAPEAA-EAMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred EeCCccHHHHHHHhccCeeeeecCceE-------eecCHHHHHHHHhcCch-hHHHHH-HHcCCCHHHHHHCCCceEecc
Confidence 999997777644456999888877654 45555556666655432 121111 145689999999999999998
Q ss_pred CC
Q 016043 193 SE 194 (396)
Q Consensus 193 ~~ 194 (396)
..
T Consensus 267 Ep 268 (319)
T PRK05724 267 EP 268 (319)
T ss_pred CC
Confidence 53
No 119
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.99 E-value=0.00093 Score=67.14 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016043 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA 113 (396)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v 113 (396)
-+++++-.+.....++.+++. .+-+|-|-=++++++ |.+..+ ........++.+.+....+|+|++|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpGA~p-G~~AEe-----------~Gqa~aIAr~l~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPGAYA-GIKAEE-----------LGQGEAIAFNLREMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCC-CHHHHH-----------HhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 578899999999999988875 455555543333332 221111 1223344567778889999999999
Q ss_pred cccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH--HHHHHHhhcCCCccHHHHHHcCccceec
Q 016043 114 HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--HLGEFLALTGARLNGKELVAAGLATHFV 191 (396)
Q Consensus 114 ~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G--~~a~~L~LTG~~l~a~eA~~~GLa~~~v 191 (396)
-|-+-|||.-....||++++.+++.++ +.+.-|++-.|-+-.. ..+.. .-.+++.++++.|+||.+|
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ys-------VisPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II 335 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYY-------VASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIV 335 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEE-------ecCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEec
Confidence 999966664444468999999987654 3333344444443221 22332 3389999999999999999
Q ss_pred CCC
Q 016043 192 PSE 194 (396)
Q Consensus 192 ~~~ 194 (396)
|.-
T Consensus 336 ~Ep 338 (431)
T PLN03230 336 PEP 338 (431)
T ss_pred cCC
Confidence 853
No 120
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.94 E-value=0.0011 Score=70.60 Aligned_cols=140 Identities=14% Similarity=0.065 Sum_probs=93.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016043 32 QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA 111 (396)
Q Consensus 32 ~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 111 (396)
..-++++.-++.....++.+++. .+-+|-|-=.+++++ |.+... ....+...+..+.+.....|+|+
T Consensus 219 nfG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe-----------~Gq~~aIArnl~amasl~VP~IS 285 (762)
T PLN03229 219 NFGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEE-----------LGQGEAIAHNLRTMFGLKVPIVS 285 (762)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHH-----------HhHHHHHHHHHHHHhCCCCCEEE
Confidence 35578889899999999888875 445555543333443 221111 12234445677778899999999
Q ss_pred EecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhcCCCccHHHHHHcCccceec
Q 016043 112 LAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKELVAAGLATHFV 191 (396)
Q Consensus 112 ~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~l~a~eA~~~GLa~~~v 191 (396)
+|-|.|.|||+-....||++++.+++.++ +.++-|++-.|-|-.. .+.. +-..-+|++.|.+++|+||++|
T Consensus 286 VViGeggSGGAlA~g~aD~VlMle~A~~s-------VisPEgaAsILwkd~~-~A~e-AAe~lkiTa~dL~~lGiiD~II 356 (762)
T PLN03229 286 IVIGEGGSGGALAIGCANKLLMLENAVFY-------VASPEACAAILWKSAK-AAPK-AAEKLRITAQELCRLQIADGII 356 (762)
T ss_pred EEeCCcchHHHHHhhcCCEEEEecCCeEE-------ecCHHHHHHHHhcCcc-cHHH-HHHHcCCCHHHHHhCCCCeeec
Confidence 99999988887766779999998887544 4444444445544332 1111 2234578899999999999999
Q ss_pred CC
Q 016043 192 PS 193 (396)
Q Consensus 192 ~~ 193 (396)
|.
T Consensus 357 pE 358 (762)
T PLN03229 357 PE 358 (762)
T ss_pred cC
Confidence 85
No 121
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.68 E-value=0.00065 Score=63.33 Aligned_cols=134 Identities=10% Similarity=0.044 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHHhhCC---CceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEE
Q 016043 36 ISSKVVSLLAEYLEKWEKDD---QAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVAL 112 (396)
Q Consensus 36 l~~~m~~~L~~~l~~~~~d~---~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~ 112 (396)
++..+...+...|..++..+ .+.+ .|-+. ||++.. ...++..|...+-||++.
T Consensus 63 Idd~~a~~i~aqLl~L~~~~~~~~I~l-yINSp------GGsv~a-----------------GlaIyd~m~~~~~~V~tv 118 (221)
T PRK14514 63 IDDYTANTIQAQLLYLDSVDPGKDISI-YINSP------GGSVYA-----------------GLGIYDTMQFISSDVATI 118 (221)
T ss_pred EcHHHHHHHHHHHHHHhccCCCCCEEE-EEECC------Ccchhh-----------------HHHHHHHHHhcCCCEEEE
Confidence 68888888888877776432 3333 23333 344321 123455677788899999
Q ss_pred ecccccccccccccCCCE--EEEeCCceeeccccccCccCCchHH----HHHhhc-----------cH---HHHHHHhhc
Q 016043 113 AHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFS----FIHSRL-----------PG---HLGEFLALT 172 (396)
Q Consensus 113 v~G~a~GGG~~lal~~d~--rIate~a~f~~PE~~iGl~Pd~G~s----~~L~rl-----------~G---~~a~~L~LT 172 (396)
+.|.|.+.|.-|.++||. |++.++++|.+....-|......-. --+-++ -| ..-..++-.
T Consensus 119 ~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~r 198 (221)
T PRK14514 119 CTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDR 198 (221)
T ss_pred EEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999995 8899988888766554432211100 011111 12 122233334
Q ss_pred CCCccHHHHHHcCccceecCC
Q 016043 173 GARLNGKELVAAGLATHFVPS 193 (396)
Q Consensus 173 G~~l~a~eA~~~GLa~~~v~~ 193 (396)
...++|+||++.||+|+++.+
T Consensus 199 d~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 199 DYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred CccCCHHHHHHcCCccEEeec
Confidence 556999999999999999864
No 122
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=97.61 E-value=0.00085 Score=61.71 Aligned_cols=135 Identities=15% Similarity=0.194 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHHhhCC---CceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016043 35 VISSKVVSLLAEYLEKWEKDD---QAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA 111 (396)
Q Consensus 35 al~~~m~~~L~~~l~~~~~d~---~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 111 (396)
.++.++...+...|..++..+ .+.+ .|-+ .|||+.+ ...++..|...+-||..
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l-~INS------pGG~v~~-----------------GlaIyd~m~~~~~~V~T 90 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQM-YINC------PGGEVYA-----------------GLAIYDTMRYIKAPVST 90 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEE-EEEC------CCCchhh-----------------HHHHHHHHHhcCCCEEE
Confidence 478899999999888887643 2333 3333 3444432 13456667788899999
Q ss_pred EecccccccccccccCCCE--EEEeCCceeeccccccCccCCchHHHHHh------hccH-HHHHHHhhcC---------
Q 016043 112 LAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSFIHS------RLPG-HLGEFLALTG--------- 173 (396)
Q Consensus 112 ~v~G~a~GGG~~lal~~d~--rIate~a~f~~PE~~iGl~Pd~G~s~~L~------rl~G-~~a~~L~LTG--------- 173 (396)
.+.|.|.+.|.-|.++|+- |++.+++++-+....-|+. +.++-+.- ++-. -...|.--||
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~ 168 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD 168 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999995 9999999998877665541 11222111 1101 1122222344
Q ss_pred ----CCccHHHHHHcCccceecCCCC
Q 016043 174 ----ARLNGKELVAAGLATHFVPSEK 195 (396)
Q Consensus 174 ----~~l~a~eA~~~GLa~~~v~~~~ 195 (396)
..++|+||++.||+|+++.+.+
T Consensus 169 ~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 169 MERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred hccCcccCHHHHHHcCCCcEEeccCC
Confidence 4599999999999999997654
No 123
>PRK11778 putative inner membrane peptidase; Provisional
Probab=97.55 E-value=0.00069 Score=66.77 Aligned_cols=155 Identities=9% Similarity=0.034 Sum_probs=92.6
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016043 19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL 98 (396)
Q Consensus 19 ~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l 98 (396)
.+.|.+|.++.+=..+ -...+.+++...+.....+ ..|||+-. |.||.+... .. ....
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s-----------~~---a~~~ 146 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGY-----------GL---AASQ 146 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHH-----------HH---HHHH
Confidence 4678899888553211 1223445666666555433 46777644 334443221 00 0111
Q ss_pred HHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHH-----------------------
Q 016043 99 CHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFS----------------------- 155 (396)
Q Consensus 99 ~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s----------------------- 155 (396)
..++....||+|+.+++.|.-||.-++++||.++|.+.+.++---+-. ..|.....
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~-~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVA-QIPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeee-eccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 334566789999999999999999999999999999988765432211 11222110
Q ss_pred --------HHHhhcc---------------HHHHHHHhhcCCCccHHHHHHcCccceecCCCCh
Q 016043 156 --------FIHSRLP---------------GHLGEFLALTGARLNGKELVAAGLATHFVPSEKL 196 (396)
Q Consensus 156 --------~~L~rl~---------------G~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l 196 (396)
-.+...+ +..-..-+.+|+.+.|++|++.||||++...+++
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~ 289 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDY 289 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHH
Confidence 0011110 0011223458999999999999999999876654
No 124
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.50 E-value=0.0013 Score=60.35 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=92.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016043 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (396)
Q Consensus 23 ~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (396)
++|.|.-| ++.++..++...|..++.++..+-|.|.=. |-|||+.+ ...++..|
T Consensus 26 Riifl~~~-----i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~-----------------g~aIyd~m 79 (196)
T PRK12551 26 RIIFLGEP-----VTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYD-----------------GLGIFDTM 79 (196)
T ss_pred cEEEECCe-----ecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhh-----------------HHHHHHHH
Confidence 44555543 789999999999998886443333333211 33444432 12455567
Q ss_pred HhcCCeEEEEecccccccccccccCCCE--EEEeCCceeeccccccCccCCchHHH----HHhhc-----------cH--
Q 016043 103 HTYKKTQVALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSF----IHSRL-----------PG-- 163 (396)
Q Consensus 103 ~~~~kP~IA~v~G~a~GGG~~lal~~d~--rIate~a~f~~PE~~iGl~Pd~G~s~----~L~rl-----------~G-- 163 (396)
..++-|++..+.|.|.+.|.-|.++++- |++.++++|.+....-|..-...--. .|-++ -|
T Consensus 80 ~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~ 159 (196)
T PRK12551 80 QHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQP 159 (196)
T ss_pred HhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 7788899999999999999999999984 88888888877665433211110000 11111 11
Q ss_pred -HHHHHHhhcCCCccHHHHHHcCccceecCCC
Q 016043 164 -HLGEFLALTGARLNGKELVAAGLATHFVPSE 194 (396)
Q Consensus 164 -~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~ 194 (396)
..-..++-....++|+||++.||+|+++...
T Consensus 160 ~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 160 LERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred HHHHHHHhhcCcCCCHHHHHHcCCCcEEeccC
Confidence 1122233334569999999999999999764
No 125
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0009 Score=66.00 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 016043 41 VSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120 (396)
Q Consensus 41 ~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GG 120 (396)
.+.+.+.|+.+..|++++.|+|.=. |-||.+.. ....++.+..+..-+ |+++.|++.|+-|
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a--------------s~~i~~~l~~l~~~~-PV~v~v~~~AASG 142 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA--------------SELIARALKRLRAKK-PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH--------------HHHHHHHHHHHhhcC-CEEEEECCeecch
Confidence 5566777888889999999999632 33443322 122344455555444 9999999999999
Q ss_pred ccccccCCCEEEEeCCceeec
Q 016043 121 GASLMVPLKFSVVTEKTVFST 141 (396)
Q Consensus 121 G~~lal~~d~rIate~a~f~~ 141 (396)
|.-++++||.+||+++|..+=
T Consensus 143 GY~IA~aAd~I~a~p~si~GS 163 (317)
T COG0616 143 GYYIALAADKIVADPSSITGS 163 (317)
T ss_pred hhhhhccCCEEEecCCceeee
Confidence 999999999999999987654
No 126
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.40 E-value=0.0035 Score=60.26 Aligned_cols=148 Identities=13% Similarity=0.083 Sum_probs=88.1
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhC----CCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHH
Q 016043 24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKD----DQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLC 99 (396)
Q Consensus 24 ~itLnrP~~lNal~~~m~~~L~~~l~~~~~d----~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~ 99 (396)
++-.+..-.--++......++..+++.+.+| ..+.+|.|.-+|++ -+.+ . ......+. ..+..+
T Consensus 63 v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGa-----RlqE---g---~~~L~~~a-~i~~~~ 130 (274)
T TIGR03133 63 VAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGV-----RLQE---A---NAGLIAIA-EIMRAI 130 (274)
T ss_pred EEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCc-----Chhh---h---HHHHHHHH-HHHHHH
Confidence 3333433345678888889999999888762 22346666554433 2211 0 01111111 112223
Q ss_pred HHHHhcCCeEEEEeccc--ccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-H--HHHHHhhcCC
Q 016043 100 HHIHTYKKTQVALAHGI--TMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-H--LGEFLALTGA 174 (396)
Q Consensus 100 ~~i~~~~kP~IA~v~G~--a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~--~a~~L~LTG~ 174 (396)
..+... .|+|+++-|. |.||+.-++..||++|+++++.+++. |.-..-...| . -...-.|.-+
T Consensus 131 ~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~l~~~ 198 (274)
T TIGR03133 131 LDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRALVWR 198 (274)
T ss_pred HHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhccccc
Confidence 334444 8999999999 89999999999999999998766651 1111111111 0 1223334445
Q ss_pred CccHHHHHHcCccceecCCCC
Q 016043 175 RLNGKELVAAGLATHFVPSEK 195 (396)
Q Consensus 175 ~l~a~eA~~~GLa~~~v~~~~ 195 (396)
.+.|+.....|++|.+++++.
T Consensus 199 ~lGG~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 199 TTGGKHRFLSGDADVLVEDDV 219 (274)
T ss_pred ccchHhHhhcccceEEeCCHH
Confidence 577777888999999998653
No 127
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.32 E-value=0.012 Score=55.60 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=95.6
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHH
Q 016043 19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKW-EKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (396)
Q Consensus 19 ~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~-~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (396)
.|....|.=|+|.. .++.+-..++...+... +++.++-+|.|-=..+ |-.|-. .......+..-+
T Consensus 30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~-----------aE~~G~~~a~A~ 95 (238)
T TIGR03134 30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRR-----------EELLGINQALAH 95 (238)
T ss_pred CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHH-----------HHHHHHHHHHHH
Confidence 34444555566654 78888899999999885 5557777776653321 111111 111222333344
Q ss_pred HHHHHH---hcCCeEEEEeccccccccc-ccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhc-
Q 016043 98 LCHHIH---TYKKTQVALAHGITMGGGA-SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALT- 172 (396)
Q Consensus 98 l~~~i~---~~~kP~IA~v~G~a~GGG~-~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LT- 172 (396)
+.+.+. ..+.|+|++|-|.++|||+ .+++.+|.++|. |...++..+.-|++-.+-|-.. ....+.=+
T Consensus 96 l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Al-------p~A~i~vm~~e~aa~I~~~~~~-~~~e~a~~~ 167 (238)
T TIGR03134 96 LAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIAL-------PGAMVHVMDLESMARVTKRSVE-ELEALAKSS 167 (238)
T ss_pred HHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEc-------CCcEEEecCHHHHHHHHccCHh-HHHHHHHhh
Confidence 455555 4459999999999998875 444456665554 6666777776677666655443 22222111
Q ss_pred -CCCccHHHHHHcCccceecCCCCh
Q 016043 173 -GARLNGKELVAAGLATHFVPSEKL 196 (396)
Q Consensus 173 -G~~l~a~eA~~~GLa~~~v~~~~l 196 (396)
-...+...+.+.|++|.++++.+-
T Consensus 168 ~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 168 PVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred hhhccCHHHHHhCCCccEEeCCCCc
Confidence 123566788999999999997664
No 128
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.25 E-value=0.007 Score=58.88 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=96.3
Q ss_pred EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHH
Q 016043 18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (396)
Q Consensus 18 ~~~~v~~itLnrP~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (396)
.+|.-..|.-|.|. ..-+++....+.+..+++.+.+. .+-+|.|.-.|++ -+ .++ -..+..+ ....
T Consensus 118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsgGa-----rm---qEg---i~sL~~~-ak~~ 184 (292)
T PRK05654 118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASGGA-----RM---QEG---LLSLMQM-AKTS 184 (292)
T ss_pred ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ch---hhh---hhHHHhH-HHHH
Confidence 44544455556655 56789999999999999988775 5777887755533 11 111 0001111 1223
Q ss_pred HHHHHHHhcCCeEEEEecccccccccc-cccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhcCC
Q 016043 97 WLCHHIHTYKKTQVALAHGITMGGGAS-LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGA 174 (396)
Q Consensus 97 ~l~~~i~~~~kP~IA~v~G~a~GGG~~-lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LTG~ 174 (396)
..+..+.....|+|+++-|.|.||+.. .++.+|++||.+++.+++--. |.+. ..+..+ .-+
T Consensus 185 ~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp---------------rvie~~~~e~l--pe~ 247 (292)
T PRK05654 185 AALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGP---------------RVIEQTVREKL--PEG 247 (292)
T ss_pred HHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCH---------------HHHHhhhhhhh--hhh
Confidence 344445666799999999999999654 577799999988776555211 2221 111111 111
Q ss_pred CccHHHHHHcCccceecCCCChHHHHHHH
Q 016043 175 RLNGKELVAAGLATHFVPSEKLPELEKRL 203 (396)
Q Consensus 175 ~l~a~eA~~~GLa~~~v~~~~l~~~~~~l 203 (396)
.-+++-+.+.|++|.+|++.++.....++
T Consensus 248 ~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~ 276 (292)
T PRK05654 248 FQRAEFLLEHGAIDMIVHRRELRDTLASL 276 (292)
T ss_pred hcCHHHHHhCCCCcEEECHHHHHHHHHHH
Confidence 22455567889999999998877644443
No 129
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.17 E-value=0.0055 Score=59.65 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=87.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCC----CceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHH
Q 016043 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDD----QAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (396)
Q Consensus 22 v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~----~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (396)
|.++-.+..=.--++...-..++..+++.+.++. -+.+|+|.-+|++ -+. +. ......+. ..+.
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----Rlq---Eg---~~~L~~~a-~i~~ 137 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQ---EA---NAGLAAIA-EIMR 137 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----Ccc---ch---HHHHHHHH-HHHH
Confidence 3334444444567888889999999999888765 2567776654432 221 10 11111111 1122
Q ss_pred HHHHHHhcCCeEEEEeccc--ccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH---HHHHHHhhc
Q 016043 98 LCHHIHTYKKTQVALAHGI--TMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG---HLGEFLALT 172 (396)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~--a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G---~~a~~L~LT 172 (396)
.+..+... .|+|+++-|. |+||+.-++..||++|+++++.+++.- .-..-...| .-...-.+.
T Consensus 138 ~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~iglaG-----------P~VIe~~~G~e~~d~~d~~~v 205 (301)
T PRK07189 138 AIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLSG-----------PEVIEQEAGVEEFDSRDRALV 205 (301)
T ss_pred HHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEeccC-----------HHHHHHhcCCcccCHHHhccc
Confidence 23334444 9999999999 999999999999999999987766521 111111111 011122222
Q ss_pred CCCccHHHHHHcCccceecCCCC
Q 016043 173 GARLNGKELVAAGLATHFVPSEK 195 (396)
Q Consensus 173 G~~l~a~eA~~~GLa~~~v~~~~ 195 (396)
.+.+.+......|.+|.+++++.
T Consensus 206 w~~lGG~h~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 206 WRTTGGKHRYLSGLADALVDDDV 228 (301)
T ss_pred ccccCcceeeecccceEEeCCHH
Confidence 22233345556899999997653
No 130
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.11 E-value=0.0015 Score=62.26 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016043 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA 113 (396)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v 113 (396)
+-++.+....+.++++...++..+-.+ |. .-||++.. ..++...|..++.|++++|
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~IdLi-i~------TpGG~v~A-----------------A~~I~~~l~~~~~~v~v~V 125 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPIDLI-IH------TPGGLVDA-----------------AEQIARALREHPAKVTVIV 125 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceEEE-EE------CCCCcHHH-----------------HHHHHHHHHhCCCCEEEEE
Confidence 568999999999999998887666444 33 23444432 1456677888999999999
Q ss_pred cccccccccccccCCCEEEEeCCceeeccccccCccCC
Q 016043 114 HGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTD 151 (396)
Q Consensus 114 ~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd 151 (396)
+..||-||.-++++||-.|+++.+.++--+.++|-.|.
T Consensus 126 P~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA 163 (285)
T PF01972_consen 126 PHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPA 163 (285)
T ss_pred CcccccHHHHHHHhCCeEEECCCCccCCCCccccCCCh
Confidence 99999999999999999999999999999999998774
No 131
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.02 E-value=0.02 Score=55.58 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=95.6
Q ss_pred EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHH
Q 016043 18 EIGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMY 96 (396)
Q Consensus 18 ~~~~v~~itLnrP~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~ 96 (396)
.+|.-..|.-|.+. ..-+++....+.+..+++.+.+. .+-+|.+...|++- +.+. ......+ ....
T Consensus 117 I~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGaR--------mqEg---~~sL~~~-ak~~ 183 (285)
T TIGR00515 117 LYGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGAR--------MQEA---LLSLMQM-AKTS 183 (285)
T ss_pred ECCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCcc--------cccc---hhHHHhH-HHHH
Confidence 34543444444444 55789999999999999888764 56788887655431 1111 1111121 1222
Q ss_pred HHHHHHHhcCCeEEEEecccccccccc-cccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhcCC
Q 016043 97 WLCHHIHTYKKTQVALAHGITMGGGAS-LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGA 174 (396)
Q Consensus 97 ~l~~~i~~~~kP~IA~v~G~a~GGG~~-lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LTG~ 174 (396)
..+..+.....|+|+++-|.|.||+.. .++.+|++||.+++.+++--. |++. ..+.. +.-+
T Consensus 184 ~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGp---------------rVie~ti~e~--lpe~ 246 (285)
T TIGR00515 184 AALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGP---------------RVIEQTVREK--LPEG 246 (285)
T ss_pred HHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCH---------------HHHHHHhcCc--cchh
Confidence 334455667899999999999999654 557999999998877665221 1111 11111 1111
Q ss_pred CccHHHHHHcCccceecCCCChHHHHHHH
Q 016043 175 RLNGKELVAAGLATHFVPSEKLPELEKRL 203 (396)
Q Consensus 175 ~l~a~eA~~~GLa~~~v~~~~l~~~~~~l 203 (396)
.-+++=+.+.|++|.+|++.++.....++
T Consensus 247 ~q~ae~~~~~G~vD~iv~~~~~r~~l~~~ 275 (285)
T TIGR00515 247 FQTSEFLLEHGAIDMIVHRPEMKKTLASL 275 (285)
T ss_pred cCCHHHHHhCCCCcEEECcHHHHHHHHHH
Confidence 22444467889999999998887644444
No 132
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=96.97 E-value=0.014 Score=54.46 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHhhCCCce--EEEEEcCCCCcccC---CCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEE
Q 016043 36 ISSKVVSLLAEYLEKWEKDDQAK--LVIVKGVGRAFSAG---GDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQV 110 (396)
Q Consensus 36 l~~~m~~~L~~~l~~~~~d~~v~--~Vvl~G~G~aFcaG---~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~I 110 (396)
++.++...|...|-.++.++..+ -+-|-+.|+..-+| |++. ....++..|...+-|+.
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~-----------------~glaIyD~m~~ik~~V~ 111 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFET-----------------EAFAICDTMRYIKPPVH 111 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccc-----------------cHHHHHHHHHhcCCCeE
Confidence 34448999988887776543222 34445655444444 2211 11334556667788999
Q ss_pred EEecccccccccccccCCCE--EEEeCCceeeccccccCccCCchHHHH------HhhccH-HHHHHHhhcCC-------
Q 016043 111 ALAHGITMGGGASLMVPLKF--SVVTEKTVFSTPEASIGFHTDCGFSFI------HSRLPG-HLGEFLALTGA------- 174 (396)
Q Consensus 111 A~v~G~a~GGG~~lal~~d~--rIate~a~f~~PE~~iGl~Pd~G~s~~------L~rl~G-~~a~~L~LTG~------- 174 (396)
..+.|.|.+.+.-|.++++- |.+.++++|-+.....|.. +-++-+ |-++-- -...|.--||+
T Consensus 112 Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~ 189 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSK 189 (222)
T ss_pred EEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999985 9999999988777654442 111111 111111 11223334554
Q ss_pred ------CccHHHHHHcCccceecCC
Q 016043 175 ------RLNGKELVAAGLATHFVPS 193 (396)
Q Consensus 175 ------~l~a~eA~~~GLa~~~v~~ 193 (396)
.++|+||++.||+|+++.+
T Consensus 190 d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 190 DTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HhcCCCcCCHHHHHHcCCCcEEecc
Confidence 4999999999999999965
No 133
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.85 E-value=0.012 Score=62.72 Aligned_cols=85 Identities=8% Similarity=-0.039 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Q 016043 39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (396)
Q Consensus 39 ~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (396)
-.+.++.++|+.+.+|+.|++|||.-.+ +.|+.+..+ ...++.+..+....|||||..++.+
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~--------------~ei~~ai~~fk~sgKpVvA~~~~~~- 137 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL--------------VEIGSALSEFKDSGKPVYAYGTNYS- 137 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH--------------HHHHHHHHHHHhcCCeEEEEEcccc-
Confidence 3577999999999999999999998653 123333222 2233444455667899999999876
Q ss_pred ccccccccCCCEEEEeCCceeec
Q 016043 119 GGGASLMVPLKFSVVTEKTVFST 141 (396)
Q Consensus 119 GGG~~lal~~d~rIate~a~f~~ 141 (396)
-||.-|+.+||-+++.+.+.++.
T Consensus 138 s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 138 QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred chhhhhhhhCCEEEECCCceEEe
Confidence 57889999999999998877644
No 134
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=96.84 E-value=0.0037 Score=57.09 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=87.5
Q ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHH
Q 016043 24 LVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIH 103 (396)
Q Consensus 24 ~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~ 103 (396)
.|.|..| ++..+...+...|..++..+..+-|.|.=+ |-|||+.+ ...++..|.
T Consensus 29 iI~l~g~-----I~~~~a~~i~aqll~Lea~~~~k~I~lyIN----SpGG~V~a-----------------G~AIydtm~ 82 (200)
T COG0740 29 IIFLGGE-----IEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTA-----------------GLAIYDTMQ 82 (200)
T ss_pred EEEEeee-----echHHHHHHHHHHHHHHhcCCCCCeEEEEe----CCCcccch-----------------hHHHHHHHH
Confidence 3666655 456677777777777776554444444311 33444432 123455677
Q ss_pred hcCCeEEEEecccccccccccccCCCEE--EEeCCceeeccccccCccCCchHHHH-Hhhc-c--------------H--
Q 016043 104 TYKKTQVALAHGITMGGGASLMVPLKFS--VVTEKTVFSTPEASIGFHTDCGFSFI-HSRL-P--------------G-- 163 (396)
Q Consensus 104 ~~~kP~IA~v~G~a~GGG~~lal~~d~r--Iate~a~f~~PE~~iGl~Pd~G~s~~-L~rl-~--------------G-- 163 (396)
..++||...+.|.+..-|.-|+++++.. ++.+++++-..-.. |.+-+...=.. -.+. . |
T Consensus 83 ~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~ 161 (200)
T COG0740 83 FIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQASDIEIHAREILKIKERLNRIYAEHTGQT 161 (200)
T ss_pred hcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999998864 66666665544333 22221111000 0111 1 1
Q ss_pred -HHHHHHhhcCCCccHHHHHHcCccceecCCCCh
Q 016043 164 -HLGEFLALTGARLNGKELVAAGLATHFVPSEKL 196 (396)
Q Consensus 164 -~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l 196 (396)
..-....=....++|+||+++||+|+|+.+.+.
T Consensus 162 ~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 162 LEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred HHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 011111122456999999999999999987653
No 135
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.83 E-value=0.035 Score=53.88 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=83.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEE
Q 016043 32 QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVA 111 (396)
Q Consensus 32 ~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA 111 (396)
..-++.....+.+..+++.+.+. .+-+|++..+|++ -+. ++. ..+..+.+....+......-..|+|+
T Consensus 145 ~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SGGA-----RmQ---Eg~---~sL~qmak~saa~~~~~~~~~vP~Is 212 (296)
T CHL00174 145 MGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASGGA-----RMQ---EGS---LSLMQMAKISSALYDYQSNKKLFYIS 212 (296)
T ss_pred cccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCCCc-----ccc---ccc---hhhhhhHHHHHHHHHHHHcCCCCEEE
Confidence 55788888999999999888775 4677777765543 221 110 00111111111111112235689999
Q ss_pred Eeccccccccccc-ccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhcCCC----c-cHHHHHHcC
Q 016043 112 LAHGITMGGGASL-MVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR----L-NGKELVAAG 185 (396)
Q Consensus 112 ~v~G~a~GGG~~l-al~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~----l-~a~eA~~~G 185 (396)
++.|.|.||+... ++.||++|+.+++.+++-- ||++-+ .+|+. + +++-.++.|
T Consensus 213 vl~gPt~GG~aas~a~l~Diiiae~~A~IgfAG---------------PrVIe~------t~ge~lpe~fq~ae~l~~~G 271 (296)
T CHL00174 213 ILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAG---------------KRVIEQ------TLNKTVPEGSQAAEYLFDKG 271 (296)
T ss_pred EEcCCCchHHHHHHHHcccEEEEeCCeEEEeeC---------------HHHHHH------hcCCcCCcccccHHHHHhCc
Confidence 9999999998765 6679999997776554421 111110 11221 2 244467899
Q ss_pred ccceecCCCChHHHHHHH
Q 016043 186 LATHFVPSEKLPELEKRL 203 (396)
Q Consensus 186 La~~~v~~~~l~~~~~~l 203 (396)
++|.+|+..+|.....+|
T Consensus 272 ~vD~iV~r~~lr~~l~~l 289 (296)
T CHL00174 272 LFDLIVPRNLLKGVLSEL 289 (296)
T ss_pred CceEEEcHHHHHHHHHHH
Confidence 999999988877654444
No 136
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=96.70 E-value=0.0013 Score=57.97 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=59.7
Q ss_pred HHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccc------------cCc---------cCCch-------
Q 016043 102 IHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEAS------------IGF---------HTDCG------- 153 (396)
Q Consensus 102 i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~------------iGl---------~Pd~G------- 153 (396)
.....||+||.++|.+..||.-|+++||-+++++.+.++..-+. +|+ +.+.+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35679999999999999999999999999999998877652221 221 22221
Q ss_pred --HHHHHhhccH------------HH-----HHHHhhcCCCccHHHHHHcCccceecCCCChHH
Q 016043 154 --FSFIHSRLPG------------HL-----GEFLALTGARLNGKELVAAGLATHFVPSEKLPE 198 (396)
Q Consensus 154 --~s~~L~rl~G------------~~-----a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~ 198 (396)
.-..+.+++. .+ -..-++.|..++|++|++.||||.+-..+++..
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~ 145 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIA 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHH
Confidence 1111111110 11 112246899999999999999999975554443
No 137
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=96.34 E-value=0.085 Score=55.46 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=99.8
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHH
Q 016043 19 IGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (396)
Q Consensus 19 ~~~v~~itLnrP~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (396)
+|.-..|.=|+|. .--+++..-.+++.++++.+.+. .+-+|.|.-.++ |..|-+- .....++..-+
T Consensus 313 ~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~-----------E~~g~~~~~a~ 379 (512)
T TIGR01117 313 NGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQ-----------EYGGIIRHGAK 379 (512)
T ss_pred CCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHH-----------HHHHHHHHHHH
Confidence 3444444556654 33469999999999999988764 566666654433 4433221 11334555667
Q ss_pred HHHHHHhcCCeEEEEeccccccccccccc----CCCEEEEeCCceeeccccccCccCCchHHHHHhhcc-----H-HHHH
Q 016043 98 LCHHIHTYKKTQVALAHGITMGGGASLMV----PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLP-----G-HLGE 167 (396)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GGG~~lal----~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~-----G-~~a~ 167 (396)
+++.+.....|.|++|-|.+.|||..-.+ .+|+++|.++ ..+|+.+.-|+.-.+-|-- - ....
T Consensus 380 ~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~-------a~~~v~~pe~a~~i~~~~~l~~~~~~~~~~ 452 (512)
T TIGR01117 380 VLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPT-------AEIAVMGPAGAANIIFRKDIKEAKDPAATR 452 (512)
T ss_pred HHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCC-------CeEeecCHHHHHHHHhhhhcccccCHHHHH
Confidence 88888899999999999999888643322 3777655555 5566665555444443311 0 1111
Q ss_pred HHh---hcCCCccHHHHHHcCccceecCCCChHH
Q 016043 168 FLA---LTGARLNGKELVAAGLATHFVPSEKLPE 198 (396)
Q Consensus 168 ~L~---LTG~~l~a~eA~~~GLa~~~v~~~~l~~ 198 (396)
.-. .--+..++..+.+.|++|.+|++.+.-.
T Consensus 453 ~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~ 486 (512)
T TIGR01117 453 KQKIAEYREEFANPYKAAARGYVDDVIEPKQTRP 486 (512)
T ss_pred HHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHH
Confidence 111 1122447788999999999999988765
No 138
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.02 E-value=0.069 Score=56.69 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=88.1
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHH
Q 016043 19 IGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (396)
Q Consensus 19 ~~~v~~itLnrP~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (396)
+|.-..|.-|.+. +--+++....+++..+++.+.+. .+-+|.|.-.|+++-.+ +...+. .. ..+ ...+.
T Consensus 127 ~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSgGarl~~-q~e~~~-----~~--~~~-g~if~ 196 (569)
T PLN02820 127 HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSGGANLPR-QAEVFP-----DR--DHF-GRIFY 196 (569)
T ss_pred CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCCcc-cccccc-----hH--hHH-HHHHH
Confidence 3433334445444 56789999999999999988775 45677666544333211 000000 00 111 11222
Q ss_pred HHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhcCCCcc
Q 016043 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLN 177 (396)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~l~ 177 (396)
....+.....|+|+++-|.|.|||+-+...||++|+++.+ ..|++ +|.-......| .. +|.+.+.
T Consensus 197 ~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~------a~i~~----aGP~vV~~~~G---e~--v~~eeLG 261 (569)
T PLN02820 197 NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGN------GTIFL----AGPPLVKAATG---EE--VSAEDLG 261 (569)
T ss_pred HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCC------cEEEe----cCHHHHHhhcC---cc--cCHHHhC
Confidence 2233555678999999999999999999999999999853 12232 12111111112 11 3444455
Q ss_pred HHHHH--HcCccceecCCCC
Q 016043 178 GKELV--AAGLATHFVPSEK 195 (396)
Q Consensus 178 a~eA~--~~GLa~~~v~~~~ 195 (396)
+.+.. ..|.++++++++.
T Consensus 262 Ga~~h~~~sGv~d~~~~de~ 281 (569)
T PLN02820 262 GADVHCKVSGVSDHFAQDEL 281 (569)
T ss_pred CHHHhcccccccccccCchH
Confidence 55554 3799988887654
No 139
>PRK10949 protease 4; Provisional
Probab=95.86 E-value=0.071 Score=57.21 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Q 016043 39 KVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (396)
Q Consensus 39 ~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (396)
-.+.++.++|+.+.+||.|++|||.-.+. .|+.+.. ....++....+....||+||..+..+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~---gG~~~a~--------------~~eI~~ai~~fk~sGKpVvA~~~~~~- 156 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF---AGADQPS--------------MQYIGKALREFRDSGKPVYAVGDSYS- 156 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC---CCccHHH--------------HHHHHHHHHHHHHhCCeEEEEecCcc-
Confidence 34568999999999999999999987531 1122111 12223444455667899999766665
Q ss_pred ccccccccCCCEEEEeCCceeec
Q 016043 119 GGGASLMVPLKFSVVTEKTVFST 141 (396)
Q Consensus 119 GGG~~lal~~d~rIate~a~f~~ 141 (396)
-+|.-|+.+||-+++.+.+.++.
T Consensus 157 s~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 157 QGQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred chhhhhhhhCCEEEECCCceEEE
Confidence 46889999999999998876654
No 140
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.45 E-value=0.16 Score=48.34 Aligned_cols=141 Identities=16% Similarity=0.173 Sum_probs=88.8
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHH
Q 016043 22 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHH 101 (396)
Q Consensus 22 v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~ 101 (396)
++...++--=-.-+|..-.-+.|..+++.+-++ .+.+|+++.+|++=-- ++ .-.+..+. .....+.+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGGARMQ--------Eg---~lSLMQMa-ktsaAl~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGGARMQ--------EG---ILSLMQMA-KTSAALKR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcchhHh--------HH---HHHHHHHH-HHHHHHHH
Confidence 333344332234677777888899999888775 5789999887742110 00 00111221 22334556
Q ss_pred HHhcCCeEEEEeccccccc-ccccccCCCEEEEeCCceeeccc-----cccCc-cCCchHHHHHhhccH-HHHHHHhhcC
Q 016043 102 IHTYKKTQVALAHGITMGG-GASLMVPLKFSVVTEKTVFSTPE-----ASIGF-HTDCGFSFIHSRLPG-HLGEFLALTG 173 (396)
Q Consensus 102 i~~~~kP~IA~v~G~a~GG-G~~lal~~d~rIate~a~f~~PE-----~~iGl-~Pd~G~s~~L~rl~G-~~a~~L~LTG 173 (396)
+..-..|+|+++..+++|| -+.+++.+|+.||-+++.+++.- ..+|- .|+ | +.+
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVIEQTire~LPe-----------gfQ~a------- 252 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVIEQTIREKLPE-----------GFQTA------- 252 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhhhhhhcccCCc-----------chhhH-------
Confidence 7778899999999999988 46888999998877666555422 11221 122 2 333
Q ss_pred CCccHHHHHHcCccceecCCCChHH
Q 016043 174 ARLNGKELVAAGLATHFVPSEKLPE 198 (396)
Q Consensus 174 ~~l~a~eA~~~GLa~~~v~~~~l~~ 198 (396)
+-.++.|++|.+|+..++..
T Consensus 253 -----EfLlehG~iD~iv~R~elr~ 272 (294)
T COG0777 253 -----EFLLEHGMIDMIVHRDELRT 272 (294)
T ss_pred -----HHHHHcCCceeeecHHHHHH
Confidence 44579999999998876654
No 141
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=95.27 E-value=0.12 Score=54.08 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=86.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCC--CchhhccCCCCchhHHHHHHHHHHHHHHHHhc
Q 016043 28 NRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGG--DLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTY 105 (396)
Q Consensus 28 nrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~--Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~ 105 (396)
+.--..-++...-...+..+++.+.++ .+-+|.|.- |+|+ ++.+-.. ....+-+ .+.-...+..
T Consensus 65 D~t~~gGs~g~~~~~Ki~ra~~~A~~~-~~P~v~l~d-----sgGa~~r~~eg~~------~l~~~g~-i~~~~~~~~~- 130 (493)
T PF01039_consen 65 DFTVLGGSVGEVHGEKIARAIELALEN-GLPLVYLVD-----SGGAFLRMQEGVE------SLMGMGR-IFRAIARLSG- 130 (493)
T ss_dssp ETTSGGGTBSHHHHHHHHHHHHHHHHH-TEEEEEEEE-----ESSBCGGGGGHHH------HHHHHHH-HHHHHHHHHT-
T ss_pred ccceecCCCCcccceeeehHHHHHHHc-CCCcEEecc-----ccccccccchhhh------hhhhhHH-HHHHHHHHhc-
Confidence 334456789999999999999988876 455666654 3444 3332211 1122222 2333344555
Q ss_pred CCeEEEEecccccccccccccCCCEEEEeCC-ceeeccccccCccCCchHHHHHhhccHHHHHHHhhcCCCccHHHH---
Q 016043 106 KKTQVALAHGITMGGGASLMVPLKFSVVTEK-TVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLNGKEL--- 181 (396)
Q Consensus 106 ~kP~IA~v~G~a~GGG~~lal~~d~rIate~-a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~l~a~eA--- 181 (396)
..|+|+++.|.|.|||.-++..||+.|++++ +.+.+- |...+. ..||+.++.++.
T Consensus 131 ~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~-----------GP~vv~----------~~~Ge~~~~~~lgG~ 189 (493)
T PF01039_consen 131 GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA-----------GPRVVE----------SATGEEVDSEELGGA 189 (493)
T ss_dssp TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS-----------THHHHH----------HHHSSCTSHHHHHBH
T ss_pred CCCeEEEEccccccchhhcccccCccccCccceEEEec-----------cccccc----------cccCccccchhhhhh
Confidence 8999999999999999999999999999997 554431 111111 245677776543
Q ss_pred ----HHcCccceecCCCC
Q 016043 182 ----VAAGLATHFVPSEK 195 (396)
Q Consensus 182 ----~~~GLa~~~v~~~~ 195 (396)
...|.+|.++++++
T Consensus 190 ~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 190 DVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp HHHHHTSSSSSEEESSHH
T ss_pred hhhcccCCCceEEEechH
Confidence 46899999998753
No 142
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=94.99 E-value=0.25 Score=51.94 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=84.1
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHH
Q 016043 19 IGNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (396)
Q Consensus 19 ~~~v~~itLnrP~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (396)
+|.-..|.-+... +--++...-.+++..+++.+.++. +-+|.|.-+|++ .+.+ ... ....+-+..+.
T Consensus 80 ~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGa-----rm~e---g~~---~l~~~~~~~~~ 147 (512)
T TIGR01117 80 DGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGA-----RIQE---AVD---ALKGYGDIFYR 147 (512)
T ss_pred CCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCC-----Cccc---cch---hhhhHHHHHHH
Confidence 3433334444443 457888888999999998888765 556666543333 2211 100 00111111111
Q ss_pred HHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhcCCCcc
Q 016043 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLN 177 (396)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~l~ 177 (396)
. .. ..-..|+|+++-|.|.||+.-....|||+|+++++. .||+ +|...+-...| . -++.+.+.
T Consensus 148 ~-~~-~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a------~i~~----aGP~vv~~~~G---e--~v~~e~lG 210 (512)
T TIGR01117 148 N-TI-ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTS------QMFI----TGPQVIKTVTG---E--EVTAEQLG 210 (512)
T ss_pred H-HH-HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccce------EEEe----cChHHHHhhcC---c--ccchhhcc
Confidence 1 11 223589999999999999988878999999999642 1222 12111111111 1 12445555
Q ss_pred HHHHH--HcCccceecCCCC
Q 016043 178 GKELV--AAGLATHFVPSEK 195 (396)
Q Consensus 178 a~eA~--~~GLa~~~v~~~~ 195 (396)
+.+.. ..|++|.+++++.
T Consensus 211 Ga~~h~~~sGv~d~~~~de~ 230 (512)
T TIGR01117 211 GAMAHNSVSGVAHFIAEDDD 230 (512)
T ss_pred hHHHhccccceeEEecCChH
Confidence 65654 4799999987643
No 143
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=94.27 E-value=0.31 Score=46.88 Aligned_cols=87 Identities=14% Similarity=0.167 Sum_probs=60.3
Q ss_pred HHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhcCCCcc
Q 016043 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGARLN 177 (396)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~l~ 177 (396)
-...+.+++.|+||.|=|---+||+-=...+|.+.+-|+++|+. +.|.+.++ .|-|=.- ++... -..-.++
T Consensus 180 nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~As-ILWkD~~-ka~eA-Ae~mkit 250 (317)
T COG0825 180 NLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCAS-ILWKDAS-KAKEA-AEAMKIT 250 (317)
T ss_pred HHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhh-hhhcChh-hhHHH-HHHcCCC
Confidence 34457889999999999987666643334578889999998875 45655544 4544322 22221 2334688
Q ss_pred HHHHHHcCccceecCC
Q 016043 178 GKELVAAGLATHFVPS 193 (396)
Q Consensus 178 a~eA~~~GLa~~~v~~ 193 (396)
+.+.+++||+|.+||.
T Consensus 251 a~dLk~lgiID~II~E 266 (317)
T COG0825 251 AHDLKELGIIDGIIPE 266 (317)
T ss_pred HHHHHhCCCcceeccC
Confidence 8999999999999986
No 144
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=94.26 E-value=0.071 Score=54.26 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH---HhhcCCCCCCCCCCC
Q 016043 269 PVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRAL---TIEKDNAPKWDPPTL 342 (396)
Q Consensus 269 ~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~---lidK~r~P~w~~~~l 342 (396)
+.+.++...+|.++..+|+.++... .++...+..|......++.+ +|+.|++.+| + +| |.|.|--..+
T Consensus 228 ~~~~~i~~~~p~av~~~k~~~~~~~-~~~~~~l~~~~~~i~~~f~~---~d~~ei~~al~~~~-~k-r~~~wa~~~~ 298 (401)
T PLN02157 228 EQLKKLLTDDPSVVESCLEKCAEVA-HPEKTGVIRRIDLLEKCFSH---DTVEEIIDSLEIEA-GR-RKDTWCITTL 298 (401)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHhcC---CCHHHHHHHHHhhh-cc-cchHHHHHHH
Confidence 3466788889999999999998763 35667788888888999998 9999999999 4 55 6788854433
No 145
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=1.7 Score=44.29 Aligned_cols=147 Identities=11% Similarity=0.120 Sum_probs=101.7
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016043 19 IGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL 98 (396)
Q Consensus 19 ~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l 98 (396)
+..|.+|.++ +++++.+.+.+.+.++.++++.. .+|||.=. . .+ -+...+.++
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ld-----------------T-PG---Gl~~sm~~i 77 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELD-----------------T-PG---GLLDSMRQI 77 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEec-----------------C-CC---chHHHHHHH
Confidence 3457777776 56899999999999999998753 34444210 0 11 122334678
Q ss_pred HHHHHhcCCeEEEEec---ccccccccccccCCCEEEEeCCceeeccccc-cC-ccCCc-h-HHHHHhh------ccH--
Q 016043 99 CHHIHTYKKTQVALAH---GITMGGGASLMVPLKFSVVTEKTVFSTPEAS-IG-FHTDC-G-FSFIHSR------LPG-- 163 (396)
Q Consensus 99 ~~~i~~~~kP~IA~v~---G~a~GGG~~lal~~d~rIate~a~f~~PE~~-iG-l~Pd~-G-~s~~L~r------l~G-- 163 (396)
...|.+.+.|++..+. +.|.-.|.-++++||+..+.+.|.++--..- .| -.++. . -++++.. .-|
T Consensus 78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 8899999999888775 3699999999999999999888777643322 22 11111 1 2333332 233
Q ss_pred -HHHHHHhhcCCCccHHHHHHcCccceecC
Q 016043 164 -HLGEFLALTGARLNGKELVAAGLATHFVP 192 (396)
Q Consensus 164 -~~a~~L~LTG~~l~a~eA~~~GLa~~~v~ 192 (396)
..+..+.--...++++||++.|++|-+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence 35677888889999999999999987764
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=92.62 E-value=0.54 Score=49.25 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=97.0
Q ss_pred eCCEEEEEEcCCCCCC-CCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHH
Q 016043 19 IGNVRLVTLNRPRQLN-VISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (396)
Q Consensus 19 ~~~v~~itLnrP~~lN-al~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (396)
.|...-|.=|+|.... +|+.+-..+..+.+..++. -++-+|.|.-. ..|-.|-+- ......+..-+
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~-----------E~~g~~~~ga~ 358 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEA-----------ERAGIIRAGAR 358 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHH-----------HHTTHHHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchh-----------hhcchHHHHHH
Confidence 3444445667776433 6999999999999999887 56778877643 223322211 11334566678
Q ss_pred HHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccH---H---------H
Q 016043 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG---H---------L 165 (396)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G---~---------~ 165 (396)
+.+.+..++.|.|++|=|.+.|||.-..... ....+..|+.|-..+|+++.-|+...+-|.-- . .
T Consensus 359 ~~~a~~~~~vP~itvi~~~~~Gga~~am~~~---~~~~~~~~Awp~a~~~vm~~e~a~~i~~~~~~~~~~~~~~~~~~~~ 435 (493)
T PF01039_consen 359 LLYALAEATVPKITVIVRKAYGGAYYAMCGR---GYGPDFVFAWPTAEIGVMGPEGAASILYRDELEAAEAEGADPEAQR 435 (493)
T ss_dssp HHHHHHHH-S-EEEEEEEEEEHHHHHHTTGG---GGTTSEEEEETT-EEESS-HHHHHHHHTHHHHHHSCHCCHSHHHHH
T ss_pred HHHHHHcCCCCEEEEEeCCccCcchhhhccc---ccchhhhhhhhcceeeecChhhhheeeehhhhhhhhcccchhHHHH
Confidence 8999999999999999999999876333333 11122346666667777766666555543221 0 1
Q ss_pred HHHHhh-cCCCccHHHHHHcCccceecCCCChHH
Q 016043 166 GEFLAL-TGARLNGKELVAAGLATHFVPSEKLPE 198 (396)
Q Consensus 166 a~~L~L-TG~~l~a~eA~~~GLa~~~v~~~~l~~ 198 (396)
...+.- .-...++..+...|++|.++++.+.-.
T Consensus 436 ~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~ 469 (493)
T PF01039_consen 436 AEKIAEYEDELSSPYRAASRGYVDDIIDPAETRK 469 (493)
T ss_dssp HHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHH
T ss_pred HHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHH
Confidence 111111 111257888999999999999887654
No 147
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=90.50 E-value=4.3 Score=43.29 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016043 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA 113 (396)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v 113 (396)
-+++.+-.++..+.++.+++ -++-+|.|.-..+ |..|-+-.. ....+...++++.+.....|.|++|
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~-----------~G~~~~~a~l~~A~a~~~VP~isvi 446 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA-----------SGIAKAGAKMVMAVACAKVPKITII 446 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH-----------hhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45888999999999988876 5677666653322 444333211 3345667789999999999999999
Q ss_pred ccccccccccccc----CCCEEEEeCCceeeccccccCccCCchHHHHHhhc-c------------HHH-HHHH---hhc
Q 016043 114 HGITMGGGASLMV----PLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL-P------------GHL-GEFL---ALT 172 (396)
Q Consensus 114 ~G~a~GGG~~lal----~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl-~------------G~~-a~~L---~LT 172 (396)
=|.+.|||.--.+ ..|+ .|+.|...+|..+.-|+.-.+.+. . -.. +..- -.-
T Consensus 447 ~g~a~G~g~~aM~g~~~~~d~-------~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (569)
T PLN02820 447 VGGSFGAGNYGMCGRAYSPNF-------LFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAY 519 (569)
T ss_pred ECCcchHHHHHhcCcCCCCCE-------EEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHH
Confidence 9999998643332 3445 555566778888777777666542 0 110 0000 111
Q ss_pred CCCccHHHHHHcCccceecCCCChH
Q 016043 173 GARLNGKELVAAGLATHFVPSEKLP 197 (396)
Q Consensus 173 G~~l~a~eA~~~GLa~~~v~~~~l~ 197 (396)
-+..++..|-+.|++|.++++.+--
T Consensus 520 ~~~~~p~~aa~~~~vD~VIdP~dTR 544 (569)
T PLN02820 520 EREANPYYSTARLWDDGVIDPADTR 544 (569)
T ss_pred HHhCCHHHHHHcCCcCcccCHHHHH
Confidence 2245667788899999999876643
No 148
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=1.4 Score=41.82 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=83.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHH
Q 016043 23 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHI 102 (396)
Q Consensus 23 ~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i 102 (396)
++|.|.-| ++.++-+.+...|-.++.++.-|=|.+-=+ |-||++.+ .+.++..|
T Consensus 93 RIi~lg~~-----Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vta-----------------glAIYDtM 146 (275)
T KOG0840|consen 93 RIVFLGQP-----IDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTA-----------------GLAIYDTM 146 (275)
T ss_pred heeeeCCc-----CcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccch-----------------hhhHHHHH
Confidence 45555544 688999999888888877665555555422 44455411 12233345
Q ss_pred HhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHH-----HHhh------ccHH-HHHHHh
Q 016043 103 HTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSF-----IHSR------LPGH-LGEFLA 170 (396)
Q Consensus 103 ~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~-----~L~r------l~G~-~a~~L~ 170 (396)
.-++-||=.++=|.|.+-|.-|..++ +..-+|+||..+|=++-..|+.. +.-+ +--. .-.|.-
T Consensus 147 q~ik~~V~Tic~G~Aas~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~ 221 (275)
T KOG0840|consen 147 QYIKPDVSTICVGLAASMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAK 221 (275)
T ss_pred HhhCCCceeeehhhHHhHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666766666677766665444433 45567788888877763333321 1111 1111 122333
Q ss_pred hcCCC-------------ccHHHHHHcCccceecCC
Q 016043 171 LTGAR-------------LNGKELVAAGLATHFVPS 193 (396)
Q Consensus 171 LTG~~-------------l~a~eA~~~GLa~~~v~~ 193 (396)
-||+. +++.||++.||+|+|+..
T Consensus 222 ~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 222 HTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred hcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 56655 899999999999999864
No 149
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=88.06 E-value=2.6 Score=44.16 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=66.9
Q ss_pred CCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016043 20 GNVRLVTLN-RPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL 98 (396)
Q Consensus 20 ~~v~~itLn-rP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l 98 (396)
|.-..+..| -+.+.-++..--.+.+..+.+.+.++..-.+.+..|.| +.+.+=... .+.+...+.-
T Consensus 90 Gr~~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG------ari~~~v~~-------l~g~g~iF~~ 156 (526)
T COG4799 90 GRKVFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG------ARIQEGVPS-------LAGYGRIFYR 156 (526)
T ss_pred CeEEEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc------cccccCccc-------cccchHHHHH
Confidence 333444444 45567778877788888888777776544444444443 333221111 1111222333
Q ss_pred HHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCc
Q 016043 99 CHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKT 137 (396)
Q Consensus 99 ~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a 137 (396)
+.++... .|.|++|-|.|.|||+=+...||+.|+++++
T Consensus 157 ~a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~ 194 (526)
T COG4799 157 NARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQ 194 (526)
T ss_pred HHHhccC-CCEEEEEEecCcccccccccccceEEEEcCC
Confidence 4455555 9999999999999999999999999999985
No 150
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=80.70 E-value=13 Score=39.19 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=87.0
Q ss_pred eCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHH
Q 016043 19 IGNVRLVTLNRPRQ-LNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYW 97 (396)
Q Consensus 19 ~~~v~~itLnrP~~-lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~ 97 (396)
+|.-.=|.=|.|.. .-+|+.+-..+-.+.++-.+ -.++-.|.|.-. ..|.-|-|-. .....+..-+
T Consensus 322 ~G~pVGiIANqp~~~~G~l~~~sa~KaArFI~~cd-~~~iPlv~L~d~-pGFm~G~~~E-----------~~giik~Gak 388 (526)
T COG4799 322 DGRPVGIIANQPRHLGGVLDIDSADKAARFIRLCD-AFNIPLVFLVDT-PGFMPGTDQE-----------YGGIIKHGAK 388 (526)
T ss_pred CCEEEEEEecCccccccccchHHHHHHHHHHHhhh-ccCCCeEEEeCC-CCCCCChhHH-----------hChHHHhhhH
Confidence 33333355576664 45899999999999995444 456777777533 4566665432 1455666778
Q ss_pred HHHHHHhcCCeEEEEecccccccccccccCCCEEEEeCCceeeccccccCccCCchHHHHHhh
Q 016043 98 LCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSR 160 (396)
Q Consensus 98 l~~~i~~~~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~r 160 (396)
++++++.+.+|.|.+|-|-+.|||.-....-.+- .+-.|+.|..+||..-.-|+.-.+.|
T Consensus 389 l~~A~aeatVPkitvI~rkayGga~~~M~~~~~~---~~~~~AwP~a~iaVMG~egAv~i~~~ 448 (526)
T COG4799 389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALG---PDFNYAWPTAEIAVMGPEGAVSILYR 448 (526)
T ss_pred HHhhHhhccCCeEEEEecccccceeeeecCccCC---CceeEecCcceeeecCHHHHHHHHHH
Confidence 9999999999999999999999996554443332 56678888888888755555555554
No 151
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=76.28 E-value=24 Score=36.32 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=96.7
Q ss_pred CCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHH
Q 016043 20 GNVRLVTLNRPR-QLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWL 98 (396)
Q Consensus 20 ~~v~~itLnrP~-~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l 98 (396)
|.-.-|.-|+|+ .--.|..+.-....+.++-.. ...+-.|.|...++ |--|.+...- ...+..-.|
T Consensus 348 G~tVgIvgnn~kf~~G~L~s~sa~KgarfIe~c~-q~~IPLi~l~ni~G-fm~g~~~e~~-----------gIaK~gAkl 414 (536)
T KOG0540|consen 348 GRTVGIVGNNPKFAGGVLFSESAVKGARFIELCD-QRNIPLIFLQNITG-FMVGRAAEAG-----------GIAKHGAKL 414 (536)
T ss_pred CEEEEEeccCchhcccccchhhhhhhHHHHHHHH-hcCCcEEEEEccCC-ccccchhhhh-----------chhhhhhhh
Confidence 333346667877 446788888888788776554 45788888877665 8888876542 223344578
Q ss_pred HHHHHhcCCeEEEEecccccccccc---cccCCCEEEEeCCceeeccccccCccCCchHHHHHhhc-----cHHHHHHHh
Q 016043 99 CHHIHTYKKTQVALAHGITMGGGAS---LMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL-----PGHLGEFLA 170 (396)
Q Consensus 99 ~~~i~~~~kP~IA~v~G~a~GGG~~---lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl-----~G~~a~~L~ 170 (396)
+++.+.-+.|.|.++-|.+.||-.+ -.+..|+.++- |-..|++.-.-++.-.|.+. ......+.=
T Consensus 415 v~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yaw-------P~A~IavmG~~~a~~Vi~q~~~e~a~~~~~~~~E 487 (536)
T KOG0540|consen 415 VYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAW-------PNARIAVMGGKQAANVIFQITLEKAVALKAPYIE 487 (536)
T ss_pred hhhhhhccCceEEEEecCccCCcccccccccCCceeEEc-------ccceeeeccccchhhhhhhhhhhhhhhhcchHHH
Confidence 8889999999999999999997554 44555665554 55555554333333334333 111111111
Q ss_pred hcCCCccHHHHHHcCccceecCCCChH
Q 016043 171 LTGARLNGKELVAAGLATHFVPSEKLP 197 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~~v~~~~l~ 197 (396)
..|.++. |...|+.|.++++.+..
T Consensus 488 ~f~npy~---a~~Rg~~D~II~p~~tR 511 (536)
T KOG0540|consen 488 KFGNPYY---AAARGWDDGIIDPSDTR 511 (536)
T ss_pred HhcCccH---HHHhhccccccChhHhh
Confidence 1255554 34678888888877654
No 152
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=63.43 E-value=12 Score=30.73 Aligned_cols=91 Identities=15% Similarity=0.318 Sum_probs=49.2
Q ss_pred hccH-H-HHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcc----cCCChhhhH
Q 016043 160 RLPG-H-LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSED----VQLDGQSVL 233 (396)
Q Consensus 160 rl~G-~-~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 233 (396)
.|.| + .|..|+.-|+...+. .+ ...+++++..+...++++..-++..++.++++|... ..+......
T Consensus 4 ~Lsg~~KAAilLl~Lgee~Aa~-vl------k~l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~ 76 (108)
T PF14842_consen 4 KLSGIQKAAILLLALGEEAAAE-VL------KHLDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRD 76 (108)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHH-HH------HHS-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-HHH
T ss_pred cCCHHHHHHHHHHHHCHHHHHH-HH------ccCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccChHH
Confidence 4556 3 444555555544433 22 335778888888999999888999999999999873 222334455
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHH
Q 016043 234 NKQSIIDECFSKETVAEIIKSFEA 257 (396)
Q Consensus 234 ~~~~~I~~~f~~~tveei~~~L~~ 257 (396)
..+..+.++|+.+..++|++.+..
T Consensus 77 ~~~~lL~~alg~~~a~~il~~~~~ 100 (108)
T PF14842_consen 77 FARRLLEKALGEEKAKEILDRLEQ 100 (108)
T ss_dssp HHHH-HHHHS---HHHHH------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHhc
Confidence 677888999999999999998876
No 153
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=61.00 E-value=14 Score=34.32 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=38.6
Q ss_pred ccCCchHHHHHhhccH-HHHHH-HhhcCC--CccHHHHHHcCccceecCCCChHHHHHHHH
Q 016043 148 FHTDCGFSFIHSRLPG-HLGEF-LALTGA--RLNGKELVAAGLATHFVPSEKLPELEKRLI 204 (396)
Q Consensus 148 l~Pd~G~s~~L~rl~G-~~a~~-L~LTG~--~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~ 204 (396)
+.||+-|.-+|+.+.. ..... +++|.. .=+-++|+++|.+|..+-+=.++.+..+|.
T Consensus 55 YmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~ 115 (224)
T COG4565 55 YMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALT 115 (224)
T ss_pred ccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHH
Confidence 4688888888877654 33222 223322 234489999999999999887777776664
No 154
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=60.32 E-value=21 Score=35.28 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=32.9
Q ss_pred HHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Q 016043 44 LAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (396)
Q Consensus 44 L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (396)
+.+.|+.+++||+.++|++-+.+. ++ ......+|.+. ....||+|+++-|.+-
T Consensus 212 ~~D~L~~~~~Dp~T~~Ivl~~E~g-----G~---------~e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETEGIILIGEIG-----GT---------AEEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCccEEEEEEecC-----Cc---------hhHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 446677777888888888877631 00 01111334332 2368999999999874
No 155
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=55.31 E-value=1.8e+02 Score=28.95 Aligned_cols=158 Identities=12% Similarity=0.154 Sum_probs=95.3
Q ss_pred ccH--HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCC----ChhhhHH
Q 016043 161 LPG--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL----DGQSVLN 234 (396)
Q Consensus 161 l~G--~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 234 (396)
+.| ..|..|+.-|+...+.= + ...+++++..+...++.+..-+++.++.++++|...... ...+...
T Consensus 7 lsg~~KAAilll~LGee~aa~v-l------~~L~~~ei~~l~~~m~~l~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~ 79 (334)
T PRK07194 7 MSNLEQAAILLLSMGEEAAAMV-M------QQLSREEVQRLSQKMARLSGIKVDQARQVLQRFFDDYREQSGINGASRSY 79 (334)
T ss_pred cChHHHHHHHHHHhCcHHHHHH-H------hcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccchHHH
Confidence 445 34556666666544332 2 344677888888899888888999999999999876321 1222233
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhccCCCcc-------HHHHHHHHhccChHHHHHHHHHHHhhhh----cCHHHHHHH
Q 016043 235 KQSIIDECFSKETVAEIIKSFEAEAGKEGNGW-------IGPVLKGLKKSSPTGLKITLRSVREGRE----QSLAECLKK 303 (396)
Q Consensus 235 ~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~-------a~~~~~~l~~~sp~sl~~tk~~l~~~~~----~~l~~~l~~ 303 (396)
....+.++|+.+...+|++.+..... .+.| ...++.-|..=+|..+++.+..+..... ..|.+....
T Consensus 80 ~~~~L~~alg~~~a~~il~~i~~~~~--~~~~~~L~~~~~~~la~~l~~EhPQ~iAiiL~~L~~e~AA~VL~~Lpe~~~~ 157 (334)
T PRK07194 80 LQRTLNKALGGDIAKSLINSIYGDEI--RHRMQRLQWVDPQQLARLIANEHLQMQAVFLAFLPPESAAAVLKYLPEDRQD 157 (334)
T ss_pred HHHHHHHHcCHHHHHHHHHHHhcccc--CchHHHHHCCCHHHHHHHHHccCHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 47788899999888888888765321 1222 2345556666678778877777754322 223333222
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 304 EFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 304 E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
+.-.-..-+. .++++..+-|..|+
T Consensus 158 ~v~~ria~l~-~Vs~e~~~~V~e~l 181 (334)
T PRK07194 158 DILYRIAQLD-DVDRDVVDELDELI 181 (334)
T ss_pred HHHHHHHccC-CCCHHHHHHHHHHH
Confidence 2222222222 36688777775555
No 156
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=54.49 E-value=34 Score=33.20 Aligned_cols=73 Identities=26% Similarity=0.400 Sum_probs=46.8
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHH-----------------------HHHHHHhhCCCceEEEEEcCCCCcccCCCc
Q 016043 19 IGNVRLVTLNRPRQLNVISSKVVSLLA-----------------------EYLEKWEKDDQAKLVIVKGVGRAFSAGGDL 75 (396)
Q Consensus 19 ~~~v~~itLnrP~~lNal~~~m~~~L~-----------------------~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl 75 (396)
.|+|++|. +.-.|+.+++.+|. ++|+.+++||..++||+-|.- |++-
T Consensus 145 ~G~IGiVS-----rSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEi-----GG~a 214 (293)
T COG0074 145 PGNIGIVS-----RSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEI-----GGPA 214 (293)
T ss_pred CCceEEEe-----cCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecC-----CCcH
Confidence 55566553 23557777777766 678899999999999999861 1111
Q ss_pred hhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Q 016043 76 KMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (396)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (396)
+....+|.. . ...+||+||++-|.+-
T Consensus 215 ---------Ee~AA~~i~-------~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 215 ---------EEEAAEYIK-------A-NATRKPVVAYIAGRTA 240 (293)
T ss_pred ---------HHHHHHHHH-------H-hccCCCEEEEEeccCC
Confidence 111123322 1 2234999999999875
No 157
>PLN02522 ATP citrate (pro-S)-lyase
Probab=51.98 E-value=38 Score=36.49 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCCceEEEEEcC-CCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHH--hcCCeEEEEeccccc
Q 016043 44 LAEYLEKWEKDDQAKLVIVKGV-GRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIH--TYKKTQVALAHGITM 118 (396)
Q Consensus 44 L~~~l~~~~~d~~v~~Vvl~G~-G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~--~~~kP~IA~v~G~a~ 118 (396)
+.+.|+.+++||++++|++-|. |. +.+.++...+. +..||||+++-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk~IvlygEiGg-------------------------~~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIKMIVVLGELGG-------------------------RDEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCCEEEEEEecCc-------------------------hhHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 3455666667777777777765 31 11122222232 268999999999886
No 158
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=51.20 E-value=31 Score=29.66 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 016043 43 LLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGG 120 (396)
Q Consensus 43 ~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~GG 120 (396)
.+.+.++.|.+||++++|++.-.+ .. +. +.|+ +........ ||+|++.-|..-.|
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~---------------~~-d~--~~f~----~~~~~a~~~-KPVv~lk~Grt~~g 95 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEG---------------IG-DG--RRFL----EAARRAARR-KPVVVLKAGRTEAG 95 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES-----------------S--H--HHHH----HHHHHHCCC-S-EEEEE-------
T ss_pred CHHHHHHHHhcCCCCCEEEEEccC---------------CC-CH--HHHH----HHHHHHhcC-CCEEEEeCCCchhh
Confidence 467788889999999999997654 00 11 3333 344444444 99999999875433
No 159
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=45.88 E-value=38 Score=29.80 Aligned_cols=62 Identities=24% Similarity=0.154 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecccccc
Q 016043 43 LLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMG 119 (396)
Q Consensus 43 ~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~G 119 (396)
...++|....+||++++|+|-+.++.=+. +.....+......... ...+||+|+.|-|..--
T Consensus 60 ~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~-------------~~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 60 TRNEALEIEAADPEVKVILVDIVGGIGSC-------------EDPAAGLIPAIKEAKA--EGRKKPVVARVCGTNAD 121 (153)
T ss_dssp HHHHHHHHHHTSTTESEEEEEEESSSSSH-------------HHHHHHHHHHHSHCTH--TTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHhcCCCccEEEEEeccccCch-------------HHHHHHHHHHHHhccc--cCCCCcEEEEeeeecCC
Confidence 44667777889999999999876531111 1111122111111100 34679999999987644
No 160
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=45.33 E-value=3.2e+02 Score=27.20 Aligned_cols=159 Identities=13% Similarity=0.246 Sum_probs=96.4
Q ss_pred ccH--HHHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCC----ChhhhHH
Q 016043 161 LPG--HLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQL----DGQSVLN 234 (396)
Q Consensus 161 l~G--~~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 234 (396)
+.| ..|..|+.-|+...+.=. ...+++++..+...++.+..-+++.++.++++|...... ...+...
T Consensus 9 lsg~qKAAilLl~lGee~aa~vl-------k~L~~~ei~~l~~~m~~l~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~ 81 (338)
T TIGR00207 9 LTGKQKAAILLISIGEDRSAEVF-------KHLSQEEIETLSAEIANVTQIDNQQKDDVLEEFEQIAEAQAYINIGGLDY 81 (338)
T ss_pred cChHhHHHHHHHHhCcHhHHHHH-------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCccCChHHH
Confidence 556 455666666776554422 334677888888899888888999999999999765321 2222334
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhccCCCcc-------HHHHHHHHhccChHHHHHHHHHHHhhhhc----CHHHHHHH
Q 016043 235 KQSIIDECFSKETVAEIIKSFEAEAGKEGNGW-------IGPVLKGLKKSSPTGLKITLRSVREGREQ----SLAECLKK 303 (396)
Q Consensus 235 ~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~-------a~~~~~~l~~~sp~sl~~tk~~l~~~~~~----~l~~~l~~ 303 (396)
....+.++|+.+...+|++.+....... ..| ...++.-|..-.|..+++.+..+...... .|.+....
T Consensus 82 ~~~~L~~alg~~~a~~il~~i~~~~~~~-~~~~~L~~~~~~~la~~l~~EhPQ~iAliLs~L~p~~AA~VL~~Lp~~~~~ 160 (338)
T TIGR00207 82 AREVLEKALGEEKAASILNDLTSSLQTA-PGFEFLRKAEPQQIADFIQQEHPQTIALILSHLDPAQAADILSLFPEEVQA 160 (338)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhcccccC-chhHHHHCCCHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHHhCCHHHHH
Confidence 4777889999888888888876531111 112 34456666666777777777766543322 23333333
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 304 EFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 304 E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
|.-.-..-+. .++++..+-+...|
T Consensus 161 ei~~ria~l~-~vs~~~i~~ie~~L 184 (338)
T TIGR00207 161 EVARRIATMG-RTSPEVVAEVERVL 184 (338)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3222222222 36678777765555
No 161
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=44.30 E-value=47 Score=34.24 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHHhhCCCceEEEEE-cCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecc
Q 016043 37 SSKVVSLLAEYLEKWEKDDQAKLVIVK-GVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHG 115 (396)
Q Consensus 37 ~~~m~~~L~~~l~~~~~d~~v~~Vvl~-G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G 115 (396)
......+|..+|+.++..+++-+|||. |.| -+.+|. .| ....+..+|+.++.|||++| |
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGG-------s~eDL~-----------~F-n~e~~~rai~~~~~Pvis~i-G 227 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGG-------SLEDLW-----------SF-NDEKVARAIFLSKIPIISAV-G 227 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCC-------CHHHhh-----------hc-CcHHHHHHHHcCCCCEEEec-C
Confidence 344566777777777665545555553 432 111111 11 23578899999999999966 1
Q ss_pred cccccccccc-cCCCEEEEeCCc
Q 016043 116 ITMGGGASLM-VPLKFSVVTEKT 137 (396)
Q Consensus 116 ~a~GGG~~la-l~~d~rIate~a 137 (396)
+-. =..|+ +.+|.|..|+++
T Consensus 228 He~--D~ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 228 HET--DFTISDFVADLRAPTPSA 248 (432)
T ss_pred cCC--CccHHHHhhhccCCCcHH
Confidence 111 01112 456777777654
No 162
>smart00250 PLEC Plectin repeat.
Probab=42.91 E-value=19 Score=23.55 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=17.2
Q ss_pred hcCCCccHHHHHHcCccce
Q 016043 171 LTGARLNGKELVAAGLATH 189 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~ 189 (396)
.||++++-.||++.||++.
T Consensus 17 ~t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCCcCHHHHHHcCCCCc
Confidence 3899999999999999974
No 163
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=42.09 E-value=56 Score=31.94 Aligned_cols=78 Identities=10% Similarity=0.136 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhCC---CceEEEE-EcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEe
Q 016043 38 SKVVSLLAEYLEKWEKDD---QAKLVIV-KGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALA 113 (396)
Q Consensus 38 ~~m~~~L~~~l~~~~~d~---~v~~Vvl-~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v 113 (396)
.....+|..+|+.+...+ .+-+||| +|.| .+.+|.. | ..+.+..+|+.++.|||++|
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG-------s~eDL~~-----------F-N~e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGG-------SIEDLWA-----------F-NDEEVARAIAASPIPVISAI 114 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCC-------ChHHhcc-----------c-ChHHHHHHHHhCCCCEEEec
Confidence 345667777777776654 4445555 4533 2222211 1 23678999999999999966
Q ss_pred cccccccccccc-cCCCEEEEeCCc
Q 016043 114 HGITMGGGASLM-VPLKFSVVTEKT 137 (396)
Q Consensus 114 ~G~a~GGG~~la-l~~d~rIate~a 137 (396)
|+-.= ..|+ +.+|+|..|+++
T Consensus 115 -GHe~D--~ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 115 -GHETD--FTIADFVADLRAPTPTA 136 (319)
T ss_pred -CCCCC--chHHHHHHHhhCCCHHH
Confidence 22110 1111 456667666654
No 164
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=40.18 E-value=1e+02 Score=24.30 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=36.0
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC
Q 016043 13 VVLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66 (396)
Q Consensus 13 ~v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G 66 (396)
.+.++..+++.+|++..+ ++..-...+.+.+..+..++..+.|++.-.+
T Consensus 4 ~i~~~~~~~~~vi~~~G~-----l~~~~~~~~~~~l~~~~~~~~~~~vvidls~ 52 (108)
T TIGR00377 4 NIETEVQEGVVIVRLSGE-----LDAHTAPLLREKVTPAAERTGPRPIVLDLED 52 (108)
T ss_pred EEEEEEECCEEEEEEecc-----cccccHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 477788899999999854 4555566777777666655677888887665
No 165
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=38.41 E-value=16 Score=25.00 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.3
Q ss_pred hcCCCccHHHHHHcCccce
Q 016043 171 LTGARLNGKELVAAGLATH 189 (396)
Q Consensus 171 LTG~~l~a~eA~~~GLa~~ 189 (396)
-||++++-.+|++.||+|.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4899999999999999974
No 166
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=37.14 E-value=74 Score=32.85 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCeEEEEecccccccccccc-cCCCEEEEeCC
Q 016043 96 YWLCHHIHTYKKTQVALAHGITMGGGASLM-VPLKFSVVTEK 136 (396)
Q Consensus 96 ~~l~~~i~~~~kP~IA~v~G~a~GGG~~la-l~~d~rIate~ 136 (396)
-.+.++|+.++.|+|++|- +-. =+.|+ +.+|+|-.|++
T Consensus 215 E~vaRAi~~s~iPvISAVG-HEt--D~tL~DfVAD~RApTPT 253 (440)
T COG1570 215 EIVARAIAASRIPVISAVG-HET--DFTLADFVADLRAPTPT 253 (440)
T ss_pred HHHHHHHHhCCCCeEeecc-cCC--CccHHHhhhhccCCCch
Confidence 4588999999999999762 110 11222 34666666664
No 167
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=35.90 E-value=1e+02 Score=30.43 Aligned_cols=32 Identities=22% Similarity=0.167 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEE-cC
Q 016043 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVK-GV 65 (396)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~-G~ 65 (396)
--|+++.+.+|.+.+++.-+++++..|||+ |+
T Consensus 55 s~~t~~~w~~la~~i~~~~~~~~~dG~VVtHGT 87 (323)
T smart00870 55 SNMTPADWLKLAKRINEALADDGYDGVVVTHGT 87 (323)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCEEEEecCC
Confidence 458999999999999886555666566665 54
No 168
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=34.86 E-value=15 Score=34.43 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=57.4
Q ss_pred cCCeEEEEecccccccccccccCCCEE-----EEeCCceeeccccccCccCCchHHHHHhhccH-HHHHHHhhcCCCccH
Q 016043 105 YKKTQVALAHGITMGGGASLMVPLKFS-----VVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG-HLGEFLALTGARLNG 178 (396)
Q Consensus 105 ~~kP~IA~v~G~a~GGG~~lal~~d~r-----Iate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G-~~a~~L~LTG~~l~a 178 (396)
+.|--| ++-|..+||.+.+.++++.+ +.-|+|..+.|+..+-++-..++.+ ++++.- ++-.-...-| .-+-
T Consensus 146 ~dktki-vlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p~~~k~-i~~lc~kn~~~S~~ki~-~~~~ 222 (300)
T KOG4391|consen 146 LDKTKI-VLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFPFPMKY-IPLLCYKNKWLSYRKIG-QCRM 222 (300)
T ss_pred CCcceE-EEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheeccchhhH-HHHHHHHhhhcchhhhc-cccC
Confidence 445444 36799999999999998864 4469999999999988865555543 566543 2211111112 1111
Q ss_pred HHHHHcCccceecCCCChHH
Q 016043 179 KELVAAGLATHFVPSEKLPE 198 (396)
Q Consensus 179 ~eA~~~GLa~~~v~~~~l~~ 198 (396)
.=..-.||.|++||+-....
T Consensus 223 P~LFiSGlkDelVPP~~Mr~ 242 (300)
T KOG4391|consen 223 PFLFISGLKDELVPPVMMRQ 242 (300)
T ss_pred ceEEeecCccccCCcHHHHH
Confidence 11234599999999876543
No 169
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=34.06 E-value=2.1e+02 Score=28.39 Aligned_cols=159 Identities=16% Similarity=0.310 Sum_probs=90.9
Q ss_pred hccH-H-HHHHHhhcCCCccHHHHHHcCccceecCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccC----CChhhhH
Q 016043 160 RLPG-H-LGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQ----LDGQSVL 233 (396)
Q Consensus 160 rl~G-~-~a~~L~LTG~~l~a~eA~~~GLa~~~v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 233 (396)
.+.| + .|..|..-|....+. .+ ...|+++...+..+++.+..-++..++.++++|..... .......
T Consensus 11 ~lsg~qkaAilL~~Lg~e~Aa~-VL------~~L~~~e~~~l~~~ma~l~~vs~~~~~~vL~ef~~~~~~~~~~~~gg~~ 83 (339)
T PRK05686 11 ELTGPEKAAILLLALGEEAAAK-VL------KHLTEEEVQKLSAAMANLRNVSPEQVEAVLEEFEDEFEAGAYILMGGID 83 (339)
T ss_pred cCCHHHHHHHHHHHcCcHHHHH-HH------HcCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcccccCChHH
Confidence 4666 4 455555555554433 22 34577788888899999988889999999988876532 1223334
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhccCCCcc-------HHHHHHHHhccChHHHHHHHHHHHhhhhc----CHHHHHH
Q 016043 234 NKQSIIDECFSKETVAEIIKSFEAEAGKEGNGW-------IGPVLKGLKKSSPTGLKITLRSVREGREQ----SLAECLK 302 (396)
Q Consensus 234 ~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~-------a~~~~~~l~~~sp~sl~~tk~~l~~~~~~----~l~~~l~ 302 (396)
.....+++.++.+..++|++.+..... ...| ...++.-|..-+|..+++.+..+...... .+.+-+.
T Consensus 84 ~~~~iL~~~l~~~~a~~il~~i~~~~~--~~~fe~L~~ld~~~l~~lL~~EhpqtiA~iLs~l~~~~aa~vL~~l~~~~~ 161 (339)
T PRK05686 84 YARSLLEKALGEEKADSILERILESLG--TSGFDFLRKMDPQQLANFIRNEHPQTIALILSYLKPDQAAEILSLLPEELR 161 (339)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHhcccc--CchHHHHhcCCHHHHHHHHHhcCHHHHHHHHhCCCHHHHHHHHHhCCHHHH
Confidence 456677888888888888888875321 1111 12233344445666666655555433221 2222222
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHH
Q 016043 303 KEFRLTINILRAIISADIYEGIRALT 328 (396)
Q Consensus 303 ~E~~~~~~~~~~~~~~d~~eGv~A~l 328 (396)
.|.-.-...+. .++++..+-+...|
T Consensus 162 ~~v~~ria~l~-~v~~~~~~~i~~~L 186 (339)
T PRK05686 162 ADVMMRIATLE-GVSPEALKEVEEVL 186 (339)
T ss_pred HHHHHHHHccC-CCCHHHHHHHHHHH
Confidence 22222222222 36688877776666
No 170
>PF14024 DUF4240: Protein of unknown function (DUF4240)
Probab=33.42 E-value=2e+02 Score=24.25 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=38.0
Q ss_pred HHHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhcC
Q 016043 269 PVLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRALTIEKD 332 (396)
Q Consensus 269 ~~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A~lidK~ 332 (396)
.+...|++.+|.-+..--..+..... +....+.-.....+.+..|.|...-.|.+||-++
T Consensus 27 ~L~~~L~~l~~~ei~~F~~~~~~~~~----~~~~~~lw~Aa~ii~gg~SdD~F~yFR~wLIs~G 86 (128)
T PF14024_consen 27 PLVELLAKLPPEEIVAFDKILDQLLD----EAYTWDLWAAAYIINGGCSDDGFLYFRCWLISQG 86 (128)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHcCCCchhhHHHHHHHHHHcc
Confidence 33458889999888766655554322 2333344444455555566898888999998653
No 171
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=28.99 E-value=2.1e+02 Score=22.93 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=40.2
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCC--------ceEEEEEcCC
Q 016043 14 VLGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQ--------AKLVIVKGVG 66 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~--------v~~Vvl~G~G 66 (396)
+.++..+++.++.++.| |+..-...+.+.+..+..... ++.|||.-.+
T Consensus 2 ~~~~~~~~v~ii~~~g~-----l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~ 57 (117)
T PF01740_consen 2 IEIETHDGVLIIRLDGP-----LFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSG 57 (117)
T ss_dssp CEEEEETTEEEEEEESE-----ESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETT
T ss_pred CeeEEECCEEEEEEeeE-----EEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEe
Confidence 45788999999999977 788889999999988887665 7899997665
No 172
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=28.51 E-value=2.8e+02 Score=21.73 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=33.6
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC
Q 016043 15 LGEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66 (396)
Q Consensus 15 ~~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G 66 (396)
.++..+++.++.+..| |+..-...+.+.+..+-..+.++.|+|.-++
T Consensus 2 ~~~~~~~~~vi~l~G~-----L~f~~~~~~~~~l~~~~~~~~~~~vilDls~ 48 (106)
T TIGR02886 2 EFEVKGDVLIVRLSGE-----LDHHTAERVRRKIDDAIERRPIKHLILNLKN 48 (106)
T ss_pred eEEEECCEEEEEEecc-----cchhhHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4678889999999766 5556666677776665443467889987665
No 173
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=26.42 E-value=1.7e+02 Score=29.34 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=28.1
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEE
Q 016043 26 TLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVK 63 (396)
Q Consensus 26 tLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~ 63 (396)
.+|-+. ..|+++.+.+|.+.+.+.-+++++..|||+
T Consensus 72 ~~ni~S--~~m~~~~w~~la~~I~~~~~~~~~dGvVIt 107 (351)
T COG0252 72 VLNIDS--SDMTPEDWLRLAEAINEALDDGDVDGVVIT 107 (351)
T ss_pred eccCCc--ccCCHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 344443 578999999999999999888876666665
No 174
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=25.85 E-value=1.2e+02 Score=31.09 Aligned_cols=40 Identities=8% Similarity=0.004 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCeEEEEeccccccccccc-ccCCCEEEEeCCc
Q 016043 95 MYWLCHHIHTYKKTQVALAHGITMGGGASL-MVPLKFSVVTEKT 137 (396)
Q Consensus 95 ~~~l~~~i~~~~kP~IA~v~G~a~GGG~~l-al~~d~rIate~a 137 (396)
.+.+..+|+.++.|||++| |+-. =..| =+.+|.|.+|+++
T Consensus 213 ~e~v~~ai~~~~~Pvis~I-GHE~--D~tl~D~vAd~ra~TPta 253 (438)
T PRK00286 213 DEAVARAIAASRIPVISAV-GHET--DFTIADFVADLRAPTPTA 253 (438)
T ss_pred cHHHHHHHHcCCCCEEEec-cCCC--CccHHHHhhhccCCChHH
Confidence 3678999999999999966 1111 0111 2456777777654
No 175
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=24.53 E-value=2.7e+02 Score=19.87 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=35.6
Q ss_pred HHHHHhccChHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Q 016043 270 VLKGLKKSSPTGLKITLRSVREGREQSLAECLKKEFRLTINILRAIISADIYEGIRA 326 (396)
Q Consensus 270 ~~~~l~~~sp~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~~~~~~d~~eGv~A 326 (396)
+.+-+..+|+.-+..+++....-...+|.+.+..|.. .||.+.+.+
T Consensus 20 li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~s-----------Gd~~~~Ll~ 65 (66)
T PF00191_consen 20 LIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETS-----------GDFEKLLLA 65 (66)
T ss_dssp HHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHST-----------HHHHHHHHH
T ss_pred hhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCC-----------HHHHHHHHh
Confidence 3677889999999999999998888899998876643 566665544
No 176
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=24.50 E-value=1.8e+02 Score=29.99 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccc
Q 016043 43 LLAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITM 118 (396)
Q Consensus 43 ~L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~ 118 (396)
.+.+.|+.+.+||++++|++...+ + . +. ..|+ +...+... .||||++.-|.+-
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~-----------~----~-~~--~~f~----~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEG-----------I----K-DG--RKFL----KTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecC-----------C----C-CH--HHHH----HHHHHHcC-CCCEEEEecCCCh
Confidence 456777777777888888777653 0 0 11 3333 23334444 8999999999874
No 177
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=24.42 E-value=2.3e+02 Score=29.06 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC
Q 016043 34 NVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG 66 (396)
Q Consensus 34 Nal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G 66 (396)
--++++.+.+|.+.+.+.-+++.-.+||..|+.
T Consensus 118 ~~mtp~~w~~La~~I~~~~~~~~dGvVVtHGTD 150 (404)
T TIGR02153 118 ENMKPEYWIKIAEAVAKALKEGADGVVVAHGTD 150 (404)
T ss_pred hhCCHHHHHHHHHHHHHHhhcCCCcEEEecCCh
Confidence 457889999999999776555333556666764
No 178
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=24.14 E-value=1.5e+02 Score=28.20 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCceEEEEEcCCCCcccCCCchhhccCCCCchhHHHHHHHHHHHHHHHHhcCCeEEEEecccccc
Q 016043 44 LAEYLEKWEKDDQAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMG 119 (396)
Q Consensus 44 L~~~l~~~~~d~~v~~Vvl~G~G~aFcaG~Dl~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~kP~IA~v~G~a~G 119 (396)
+.++|+.+-+|+..+.||+-|.= || ..+....+|.+. | .-..-+||||++|-|.+.-
T Consensus 219 FID~L~vFl~D~~t~GIiliGEI-----GG---------~AEe~AA~flk~-~----nSg~~~kPVvsFIAG~tAp 275 (329)
T KOG1255|consen 219 FIDCLEVFLEDPETEGIILIGEI-----GG---------SAEEEAAEFLKE-Y----NSGSTAKPVVSFIAGVTAP 275 (329)
T ss_pred HHHHHHHHhcCcccceEEEEecc-----CC---------hhhHHHHHHHHH-h----ccCCCCCceeEEeecccCC
Confidence 34566667789999999998852 11 112222444433 2 1234689999999987643
No 179
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=23.46 E-value=1.6e+02 Score=28.91 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=10.8
Q ss_pred CCeEEEEecccc
Q 016043 106 KKTQVALAHGIT 117 (396)
Q Consensus 106 ~kP~IA~v~G~a 117 (396)
.||+|++.-|..
T Consensus 233 ~KPVV~lk~Grs 244 (300)
T PLN00125 233 EKPVVAFIAGLT 244 (300)
T ss_pred CCCEEEEEecCC
Confidence 899999998876
No 180
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=23.46 E-value=1.3e+02 Score=25.30 Aligned_cols=45 Identities=29% Similarity=0.367 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCCCCC--C----------HHHHHHHHHHHHHH--hhCCCceEEEEEcCC
Q 016043 22 VRLVTLNRPRQLNVI--S----------SKVVSLLAEYLEKW--EKDDQAKLVIVKGVG 66 (396)
Q Consensus 22 v~~itLnrP~~lNal--~----------~~m~~~L~~~l~~~--~~d~~v~~Vvl~G~G 66 (396)
+.+|+.+-|.|...= + .....++.+.+.+. ...+.++.|||.|.|
T Consensus 25 ~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPG 83 (133)
T PF03464_consen 25 LQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPG 83 (133)
T ss_dssp EEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEEST
T ss_pred EEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCH
Confidence 456777889987642 1 35566677777776 666789999999976
No 181
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=23.33 E-value=4.3e+02 Score=21.89 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCChHHHhcccCcCCC
Q 016043 319 DIYEGIRALTIEKDNAPKWDPPTLDKVDDDKVDLVFQPFGE 359 (396)
Q Consensus 319 d~~eGv~A~lidK~r~P~w~~~~l~~v~~~~v~~~f~~~~~ 359 (396)
+...-.+..+ . +|-| |++.+-.||+.+++.+||.|-+.
T Consensus 42 ~V~~~~~~~i-~-gRYP-F~~~s~~dv~l~Df~~fF~p~G~ 79 (125)
T PF06744_consen 42 EVYPFCRQAI-A-GRYP-FDPDSSRDVSLADFARFFGPGGV 79 (125)
T ss_pred HHHHHHHHHh-c-CCCC-CCCCCcccCCHHHHHHHhcCCCc
Confidence 4444445555 2 3555 56677889999999999999753
No 182
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=23.25 E-value=1.3e+02 Score=30.98 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=40.2
Q ss_pred CcccCCCchhhccCCCCc---hhHHHHHHHHHH-HHHHH------HhcCCe--EEEEecccccccccccccCCCEE
Q 016043 68 AFSAGGDLKMFYDGRNSK---DSCLEVVYRMYW-LCHHI------HTYKKT--QVALAHGITMGGGASLMVPLKFS 131 (396)
Q Consensus 68 aFcaG~Dl~~l~~~~~~~---~~~~~~~~~~~~-l~~~i------~~~~kP--~IA~v~G~a~GGG~~lal~~d~r 131 (396)
-||.||||..+.+...+. .....|+..+.- ....+ .+==|| |..-=+|+.|=.=+-|++.|+.+
T Consensus 157 eyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~ 232 (459)
T KOG0610|consen 157 EYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVS 232 (459)
T ss_pred ecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCC
Confidence 499999999997632211 122455544321 11122 233377 66667899999999999999653
No 183
>PRK13266 Thf1-like protein; Reviewed
Probab=23.09 E-value=2.3e+02 Score=26.60 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=52.4
Q ss_pred hhccHHH--HHHHhhcCCCccHHHHHHcCcccee-------cCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCCh
Q 016043 159 SRLPGHL--GEFLALTGARLNGKELVAAGLATHF-------VPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDG 229 (396)
Q Consensus 159 ~rl~G~~--a~~L~LTG~~l~a~eA~~~GLa~~~-------v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (396)
.|++-.+ =++|+--...+........||++-| =|.++...+-++|+.....|+.+++...+
T Consensus 27 rrvv~ELLVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~---------- 96 (225)
T PRK13266 27 RRVVDELLVELHLLSVNSDFKYDPLFALGLVTVFDRFMQGYRPEEHKDSIFNALCQAVGFDPEQLRQDAE---------- 96 (225)
T ss_pred HHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHH----------
Confidence 4555432 3355555678888888999999864 36666676677776655555555544433
Q ss_pred hhhHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 016043 230 QSVLNKQSIIDECFSKETVAEIIKSFEAEA 259 (396)
Q Consensus 230 ~~~~~~~~~I~~~f~~~tveei~~~L~~~~ 259 (396)
.+....+.-++++|..-|...+
T Consensus 97 --------~l~~~a~~~s~~~i~~~l~~~~ 118 (225)
T PRK13266 97 --------RLLELAKGKSLKEILSWLTQKA 118 (225)
T ss_pred --------HHHHHHhcCCHHHHHHHHhccc
Confidence 3344455667777777777644
No 184
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=22.28 E-value=2.3e+02 Score=27.54 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=11.7
Q ss_pred cCCeEEEEeccccc
Q 016043 105 YKKTQVALAHGITM 118 (396)
Q Consensus 105 ~~kP~IA~v~G~a~ 118 (396)
..||+|++.-|..-
T Consensus 224 ~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 224 MSKPVVGFIAGATA 237 (286)
T ss_pred CCCCEEEEEecCCC
Confidence 68999999988753
No 185
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=22.04 E-value=2.3e+02 Score=21.45 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=30.9
Q ss_pred EEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCccc
Q 016043 16 GEEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVG-RAFSA 71 (396)
Q Consensus 16 ~e~~~~v~~itLnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G-~aFca 71 (396)
....+++.++.|..+ ++.-+ ...+.+.+.....++ .+.|+|...+ +.+.+
T Consensus 3 ~~~~~~~~ii~l~G~--l~~~~---~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs 53 (99)
T cd07043 3 VEERGGVLVVRLSGE--LDAAT---APELREALEELLAEG-PRRLVLDLSGVTFIDS 53 (99)
T ss_pred eEEECCEEEEEEece--ecccc---hHHHHHHHHHHHHcC-CCEEEEECCCCCEEcc
Confidence 345678888998765 34444 445555555554443 6788888776 54443
No 186
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=21.98 E-value=7.2e+02 Score=24.35 Aligned_cols=136 Identities=13% Similarity=0.024 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEeCCE---EEEEEcCCCCCCCCCHHHHHHHHHHH-HHHhhCCCceEEEEEcCC-CCcccCCC--------
Q 016043 8 NPDEQVVLGEEIGNV---RLVTLNRPRQLNVISSKVVSLLAEYL-EKWEKDDQAKLVIVKGVG-RAFSAGGD-------- 74 (396)
Q Consensus 8 ~~~~~~v~~e~~~~v---~~itLnrP~~lNal~~~m~~~L~~~l-~~~~~d~~v~~Vvl~G~G-~aFcaG~D-------- 74 (396)
...++.|.+-.++++ ..+... +-.+|.++++-+.+-...+ ..+...+.-++.||-|.. +.|--+-+
T Consensus 95 ~~~FDlvi~p~HD~~~~~~Nvl~t-~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~ 173 (311)
T PF06258_consen 95 PRPFDLVIVPEHDRLPRGPNVLPT-LGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQ 173 (311)
T ss_pred ccccCEEEECcccCcCCCCceEec-ccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHH
Confidence 345566777555554 112221 2346999999887766555 445555555666665543 66655443
Q ss_pred chhhccCCCCchhHHHHHHHHHHHHHHHHhc--CCeEEEEecccccccccccccCCCEEEEeCCceeecccc
Q 016043 75 LKMFYDGRNSKDSCLEVVYRMYWLCHHIHTY--KKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEA 144 (396)
Q Consensus 75 l~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~--~kP~IA~v~G~a~GGG~~lal~~d~rIate~a~f~~PE~ 144 (396)
+..+.......-.+..--+.--.+...|.+. +.|.+-+.+|.--+-=.++...||..|+|++++=...|.
T Consensus 174 l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA 245 (311)
T PF06258_consen 174 LAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEA 245 (311)
T ss_pred HHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHH
Confidence 1111111000000000000001112222222 346665667776666778899999999999986555554
No 187
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=21.96 E-value=2.4e+02 Score=27.42 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.9
Q ss_pred cCCeEEEEeccccc
Q 016043 105 YKKTQVALAHGITM 118 (396)
Q Consensus 105 ~~kP~IA~v~G~a~ 118 (396)
..||+|++--|.+-
T Consensus 226 ~~KPVV~lk~Grs~ 239 (291)
T PRK05678 226 VTKPVVGYIAGVTA 239 (291)
T ss_pred CCCCEEEEEecCCC
Confidence 48999999998855
No 188
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=1.4e+02 Score=30.46 Aligned_cols=52 Identities=29% Similarity=0.470 Sum_probs=41.7
Q ss_pred EEEEeCCceeeccccccCccCCchHHHHHhhccH--HHHHHHhhcCCCccHHHHHH
Q 016043 130 FSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPG--HLGEFLALTGARLNGKELVA 183 (396)
Q Consensus 130 ~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G--~~a~~L~LTG~~l~a~eA~~ 183 (396)
+|||||.. +.+-+.+|++-|.|+-+-=..=-| +.-.+|++-|..=.+..|++
T Consensus 43 lrVaTE~~--~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alE 96 (467)
T KOG0960|consen 43 LRVATEHN--SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALE 96 (467)
T ss_pred cEEEeccC--CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHH
Confidence 69999998 888899999999998665555556 56677888888877777776
No 189
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=21.55 E-value=2.3e+02 Score=26.38 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=60.0
Q ss_pred hhccHH--HHHHHhhcCCCccHHHHHHcCcccee-------cCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCCh
Q 016043 159 SRLPGH--LGEFLALTGARLNGKELVAAGLATHF-------VPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDG 229 (396)
Q Consensus 159 ~rl~G~--~a~~L~LTG~~l~a~eA~~~GLa~~~-------v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (396)
.|++-. .=++|+--...+........||++-| =|.++...+-++|+.....|+.+++...+
T Consensus 27 rrvv~ELLVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~---------- 96 (214)
T TIGR03060 27 RRVVDELLVELHLLSHQSDFKYDPLFALGLVTVFDRFMEGYRPEEHLDALFDALCNSNGFDPEQLREDAK---------- 96 (214)
T ss_pred HHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCHHHHHHHHH----------
Confidence 455543 23455556678888888999999864 36666777777776665556655544433
Q ss_pred hhhHHHHHHHHHhhccCCHHHHHHHHHHhhccCCCccHHHHHHHHhccCh
Q 016043 230 QSVLNKQSIIDECFSKETVAEIIKSFEAEAGKEGNGWIGPVLKGLKKSSP 279 (396)
Q Consensus 230 ~~~~~~~~~I~~~f~~~tveei~~~L~~~~~~~~~~~a~~~~~~l~~~sp 279 (396)
.+....+.-++++|..-|.......+... ++..|+.++.
T Consensus 97 --------~l~~~a~~~s~~~i~~~l~~~~~~~~~~l---~l~~ia~n~~ 135 (214)
T TIGR03060 97 --------QLLEQAKGKGLDEILSWLTQANLSNGGGD---TLQGIAGRHK 135 (214)
T ss_pred --------HHHHHHhcCCHHHHHHHHhccccCCcchh---HHHHHhcCCC
Confidence 33444556688888888876543322222 4555554443
No 190
>PRK14053 methyltransferase; Provisional
Probab=21.28 E-value=99 Score=28.05 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=47.5
Q ss_pred EEEEEeCCEEEEEEcCCCC---CCCCCHHHHH---HHHHHHHHHhhCCCceEEEEEcCC-CCcccCCCchhhccC
Q 016043 14 VLGEEIGNVRLVTLNRPRQ---LNVISSKVVS---LLAEYLEKWEKDDQAKLVIVKGVG-RAFSAGGDLKMFYDG 81 (396)
Q Consensus 14 v~~e~~~~v~~itLnrP~~---lNal~~~m~~---~L~~~l~~~~~d~~v~~Vvl~G~G-~aFcaG~Dl~~l~~~ 81 (396)
+.-+.+..|+++||...-. .-|+...... .|...+..+-.||++|.+||.|.- +..-+|--|..|++.
T Consensus 16 ~vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TENlGIEKvI~NvisNpNIRflilcG~Ev~GHltGqsL~aL~~N 90 (194)
T PRK14053 16 TVGNPESRIAVVTLASSIESFPEAAIWGSSKTENLGVEKIIVNVISNSNIRYVLLCGGESRGHLAGHSLLAIHAN 90 (194)
T ss_pred EeCCCCCcEEEEEccccccccCCceEEeeccccccCHHHHHHHhhcCCCceEEEEecCccCCccccHHHHHHHHc
Confidence 4445567899999975311 1233222222 356777778889999999999998 889999888888763
No 191
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=21.10 E-value=1.8e+02 Score=27.28 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=29.9
Q ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Q 016043 27 LNRPRQLNVISSKVVSLLAEYLEKWEKDDQAKLVIVKGVGRA 68 (396)
Q Consensus 27 LnrP~~lNal~~~m~~~L~~~l~~~~~d~~v~~Vvl~G~G~a 68 (396)
|..++....++.+.++++.+.+++.. ..++|++.|.|..
T Consensus 11 l~~~~~~~~~~~~~l~~l~~~l~~l~---g~~vvlVhGgg~~ 49 (252)
T cd04241 11 ITDKDRPETIREENLERIARELAEAI---DEKLVLVHGGGSF 49 (252)
T ss_pred EEcCCCCCccCHHHHHHHHHHHHhcc---CCCEEEEECCCcc
Confidence 33444456799999999999998875 5689999997743
No 192
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=20.93 E-value=1.1e+02 Score=22.77 Aligned_cols=28 Identities=18% Similarity=0.526 Sum_probs=21.0
Q ss_pred Hhhcc-CCHHHHHHHHHHhhccCCCccHHHHHHHH
Q 016043 241 ECFSK-ETVAEIIKSFEAEAGKEGNGWIGPVLKGL 274 (396)
Q Consensus 241 ~~f~~-~tveei~~~L~~~~~~~~~~~a~~~~~~l 274 (396)
+||.. .|+..-+.-|++ .+||++-.+.+
T Consensus 34 ~CF~~~PsikSSLkFLRk------TpWAR~KVE~l 62 (64)
T PF09905_consen 34 NCFKNNPSIKSSLKFLRK------TPWAREKVENL 62 (64)
T ss_dssp SSTTSS--HHHHHHHHHH------SHHHHHHHHHH
T ss_pred ccCCCCCchHHHHHHHhc------CHhHHHHHHHh
Confidence 69976 589999999988 78998766654
No 193
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=20.69 E-value=2.7e+02 Score=25.75 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=50.7
Q ss_pred hhccHH--HHHHHhhcCCCccHHHHHHcCcccee-------cCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCCh
Q 016043 159 SRLPGH--LGEFLALTGARLNGKELVAAGLATHF-------VPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDG 229 (396)
Q Consensus 159 ~rl~G~--~a~~L~LTG~~l~a~eA~~~GLa~~~-------v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (396)
.|++-. .=++|+--...+........||++-| =|.++...+-++|+.....|+++++...++
T Consensus 25 rrvv~ELLVE~HLl~~n~~f~yD~lfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~--------- 95 (206)
T PLN03060 25 SNVIQELLVQQHLMRYNATYKYDPIFALGFVTVYDQLMDGYPNATDRDAIFKAYIEALGEDPDQYRKDAKK--------- 95 (206)
T ss_pred HHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHH---------
Confidence 445443 23455556778888888999999864 266666766777766655566555444333
Q ss_pred hhhHHHHHHHHHhhccCCHHHHHHHHHHh
Q 016043 230 QSVLNKQSIIDECFSKETVAEIIKSFEAE 258 (396)
Q Consensus 230 ~~~~~~~~~I~~~f~~~tveei~~~L~~~ 258 (396)
+....+.-+.++|.+-|..+
T Consensus 96 ---------l~~~a~~~s~~~l~~~l~~~ 115 (206)
T PLN03060 96 ---------LEEWASSQSASGIADFNSGD 115 (206)
T ss_pred ---------HHHHHhcCCHHHHHHHHhcc
Confidence 33444556666666666653
No 194
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=20.45 E-value=1.2e+02 Score=28.58 Aligned_cols=144 Identities=11% Similarity=0.021 Sum_probs=80.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCCceEE--EEEcCCCCcccCCCchhhccCCCCch--hHHHHHHHHHHHHHHHHhcCCe
Q 016043 33 LNVISSKVVSLLAEYLEKWEKDDQAKLV--IVKGVGRAFSAGGDLKMFYDGRNSKD--SCLEVVYRMYWLCHHIHTYKKT 108 (396)
Q Consensus 33 lNal~~~m~~~L~~~l~~~~~d~~v~~V--vl~G~G~aFcaG~Dl~~l~~~~~~~~--~~~~~~~~~~~l~~~i~~~~kP 108 (396)
...+..+.--.|..++.+.-++..-+-| |+...|.+++- .++ .+..++...-+.+..-..-.-|
T Consensus 40 ~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~gr------------reEllGi~~alAhla~a~a~AR~~GHp 107 (234)
T PF06833_consen 40 HGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYGR------------REELLGINQALAHLAKAYALARLAGHP 107 (234)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccch------------HHHHhhHHHHHHHHHHHHHHHHHcCCC
Confidence 4788888888888777655433322332 33333322211 011 1244455555555556677899
Q ss_pred EEEEeccccccccc-ccccCCCEEEEeCCceeeccccccCccCCchHHHHHhhccHHHHHHHhhcCCC--ccHHHHHHcC
Q 016043 109 QVALAHGITMGGGA-SLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLALTGAR--LNGKELVAAG 185 (396)
Q Consensus 109 ~IA~v~G~a~GGG~-~lal~~d~rIate~a~f~~PE~~iGl~Pd~G~s~~L~rl~G~~a~~L~LTG~~--l~a~eA~~~G 185 (396)
+|++|-|.+|.||| .-.+.+|-. +++|++.+-..+--.++ +..+++=..-..|.=|--. .+.+--..+|
T Consensus 108 vI~Lv~G~A~SGaFLA~GlqA~rl-------~AL~ga~i~vM~~~s~A-RVTk~~ve~Le~la~s~PvfA~gi~ny~~lG 179 (234)
T PF06833_consen 108 VIGLVYGKAMSGAFLAHGLQANRL-------IALPGAMIHVMGKPSAA-RVTKRPVEELEELAKSVPVFAPGIENYAKLG 179 (234)
T ss_pred eEEEEecccccHHHHHHHHHhcch-------hcCCCCeeecCChHHhH-HHhhcCHHHHHHHhhcCCCcCCCHHHHHHhc
Confidence 99999999999997 344555554 55566665555444333 3333332333344433332 3345556788
Q ss_pred ccceecCCCCh
Q 016043 186 LATHFVPSEKL 196 (396)
Q Consensus 186 La~~~v~~~~l 196 (396)
.++++++.+.-
T Consensus 180 ~l~~l~~~~~~ 190 (234)
T PF06833_consen 180 ALDELWDGDLA 190 (234)
T ss_pred cHHHHhccccc
Confidence 88888774443
No 195
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=20.25 E-value=2.9e+02 Score=25.78 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=50.2
Q ss_pred hhccHH--HHHHHhhcCCCccHHHHHHcCcccee-------cCCCChHHHHHHHHhccCCCHHHHHHHHHHhhcccCCCh
Q 016043 159 SRLPGH--LGEFLALTGARLNGKELVAAGLATHF-------VPSEKLPELEKRLIGLNTGDEIAVKSAIEEFSEDVQLDG 229 (396)
Q Consensus 159 ~rl~G~--~a~~L~LTG~~l~a~eA~~~GLa~~~-------v~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (396)
.|++-. .=++|+--...+.-......|||+-| =|.++...+-++|+.....||.+++...+
T Consensus 22 rrvv~ELLVe~HLl~~n~~F~yD~lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~~dp~~~r~dA~---------- 91 (216)
T PF11264_consen 22 RRVVDELLVELHLLSVNKDFQYDPLFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALGFDPEQYRQDAE---------- 91 (216)
T ss_pred HHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCCHHHHHHHHH----------
Confidence 455553 23456666788888999999999864 36667777777776665566655544333
Q ss_pred hhhHHHHHHHHHhhccCCHHHHHHHHHH
Q 016043 230 QSVLNKQSIIDECFSKETVAEIIKSFEA 257 (396)
Q Consensus 230 ~~~~~~~~~I~~~f~~~tveei~~~L~~ 257 (396)
.+...-..-|.++|...|..
T Consensus 92 --------~l~~~a~~~s~~~l~~~l~~ 111 (216)
T PF11264_consen 92 --------KLEEWAKGKSIEDLLSWLSQ 111 (216)
T ss_pred --------HHHHHHHcCCHHHHHHHHhc
Confidence 23333444566666666654
Done!