BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016044
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 167/254 (65%), Gaps = 5/254 (1%)
Query: 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIA 144
V+F+ I G + KQAL E+VILP RPELF+ L P +G+LL+GPPG GKTMLAKA+A
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTG--LRAPARGLLLFGPPGNGKTMLAKAVA 169
Query: 145 KESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHE 204
ES A F N+ ++L SK+ G+ +KLV A+F++A +LQP+IIFID+VDS L +RR +H+
Sbjct: 170 AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHD 229
Query: 205 ALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQ 264
A +KTEF+ +DG + + RV+V+ ATNRP ELDEA+LRR + + +P+ + R
Sbjct: 230 ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289
Query: 265 ILKVIL--KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAA 322
+LK +L +G + + + LA + +G++GSDL + K AA IREL E+ K A+
Sbjct: 290 LLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSAS 348
Query: 323 APRPLSRLDLEKVL 336
R + D + L
Sbjct: 349 EMRNIRLSDFTESL 362
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 161/261 (61%), Gaps = 7/261 (2%)
Query: 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIA 144
V +E I G+E K + E+V+ P+ RP++F+ L GP KG+LL+GPPGTGKT++ K IA
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIA 138
Query: 145 KESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHE 204
+SGA F ++ S+L SKW G+ +K+V A+F++A QPA+IFIDE+DS L QR +HE
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHE 198
Query: 205 ALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQ 264
+ +KTEF+ DG TT R++V+ ATNRP E+DEA RRL + I +P+ R Q
Sbjct: 199 SSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQ 258
Query: 265 ILKVILKGEKV---EENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPA 321
I+ ++ E+ EE I + + + F+G+D+ ++C++A+ IR L +
Sbjct: 259 IVINLMSKEQCCLSEEEI--EQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITP 316
Query: 322 AAPRPLSRLDLEKVLTTSRKT 342
RP++ +D E T R +
Sbjct: 317 DQVRPIAYIDFENAFRTVRPS 337
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/279 (43%), Positives = 176/279 (63%), Gaps = 8/279 (2%)
Query: 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIA 144
VE+ I G + KQAL E+VILP RPELF+ L P KG+LL+GPPG GKT+LA+A+A
Sbjct: 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVA 75
Query: 145 KESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHE 204
E A F+N+ ++L SK+ GD +KLV A+F++A +QP+IIFIDEVDS L +R +S+HE
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135
Query: 205 ALTNMKTEFMALWDGFTTDQNA-RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERA 263
A +KTEF+ +DG + + R++VLAATNRP ELDEA LRR + + +PD + R
Sbjct: 136 ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRE 195
Query: 264 QILKVILKGEKVEENID-FDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAA 322
+L +L+ + + + LA + +G++GSDL + K AA IREL E+ K +
Sbjct: 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDIS 255
Query: 323 APRPLSRLDLEKVLTTSRKTRVAATEYTLNSQSSGWSRN 361
A R ++ D L ++ R + +LNS WS++
Sbjct: 256 AMRAITEQDFHSSL---KRIRRSVAPQSLNSYEK-WSQD 290
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 140/235 (59%), Gaps = 8/235 (3%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
+V +E IGGLE Q + E+V LPL+ PELF + P KG+LLYGPPGTGKT+LAKA+
Sbjct: 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAV 71
Query: 144 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR---T 200
A E+ A FI V S L+ K+ G+ LV +F LA + P+IIFIDE+D+ +R T
Sbjct: 72 ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT 131
Query: 201 SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPD 258
+ + +A DGF D V ++ ATNRP LD AILR R + E+ PD
Sbjct: 132 GGDREVQRTLMQLLAEMDGF--DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 259 RKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313
K R +ILK+ + + E+++ + +A + EG G++L +C +A +IREL D
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD 244
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 175 bits (443), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
+V++E + GLE K+AL E VILP++ P LF + P G+LLYGPPGTGK+ LAKA+
Sbjct: 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRK--PTSGILLYGPPGTGKSYLAKAV 104
Query: 144 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH 203
A E+ + F +V S+L+SKW G+++KLV +F++A + +P+IIFID+VD+ G R +
Sbjct: 105 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES 164
Query: 204 EALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERA 263
EA +KTE + +G D V+VL ATN P +LD AI RR + I +PD R
Sbjct: 165 EASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 223
Query: 264 QILKV-ILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 311
+ ++ + V D+ L + EG++GSD+ V K A IR++
Sbjct: 224 TMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
+V++E + GLE K+AL E VILP++ P LF + P G+LLYGPPGTGK+ LAKA+
Sbjct: 23 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAV 80
Query: 144 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH 203
A E+ + F +V S+L+SKW G+++KLV +F++A + +P+IIFIDEVD+ G R +
Sbjct: 81 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGES 140
Query: 204 EALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERA 263
EA +KTE + +G D V+VL ATN P +LD AI RR + I +PD R
Sbjct: 141 EASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 199
Query: 264 QILKV-ILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 311
+ ++ + V D+ L + EG++GSD+ V K A IR++
Sbjct: 200 TMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 248
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
+V++E + GLE K+AL E VILP++ P LF + P G+LLYGPPGTGK+ LAKA+
Sbjct: 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAV 71
Query: 144 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH 203
A E+ + F +V S+L+SKW G+++KLV +F++A + +P+IIFID+VD+ G R +
Sbjct: 72 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES 131
Query: 204 EALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERA 263
EA +KTE + +G D V+VL ATN P +LD AI RR + I +PD R
Sbjct: 132 EASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190
Query: 264 QILKV-ILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 311
+ ++ + V D+ L + EG++GSD+ V K A IR++
Sbjct: 191 TMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
+V++E + GLE K+AL E VILP++ P LF + P G+LLYGPPGTGK+ LAKA+
Sbjct: 32 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAV 89
Query: 144 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH 203
A E+ + F +V S+L+SKW G+++KLV +F++A + +P+IIFID+VD+ G R +
Sbjct: 90 ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGES 149
Query: 204 EALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERA 263
EA +KTE + +G D V+VL ATN P +LD AI RR + I +PD R
Sbjct: 150 EASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 208
Query: 264 QILKVILKGEK-VEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 311
+ ++ + V D+ L + EG++GSD+ V K A IR++
Sbjct: 209 TMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 257
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 134/228 (58%), Gaps = 8/228 (3%)
Query: 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIA 144
V +E IGGLE +K+ L ELV P+ P+ F + P KGVL YGPPG GKT+LAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 145 KESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTS 201
E A FI+++ L++ WFG+++ V +F A + P ++F DE+DS R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDR 259
A + + + DG +T +N V ++ ATNRP +D AILR RL Q I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFS 307
K R ILK L+ V +++D ++LA + GF+G+DL E+C++A +
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 141/234 (60%), Gaps = 9/234 (3%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAK 141
+V ++ +GG + E+V LPLR P LF K +G P +G+LLYGPPGTGKT++A+
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALF---KAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 142 AIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS 201
A+A E+GA F + +MSK G+++ + F A K PAIIFIDE+D+ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDR 259
E + ++ + L DG Q A V+V+AATNRP+ +D A+ R R + +IG+PD
Sbjct: 317 HGEVERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313
R +IL++ K K+ +++D + +A G G+DL +C +AA +IR+ +D
Sbjct: 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 134/228 (58%), Gaps = 8/228 (3%)
Query: 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIA 144
V +E IGGLE +K+ L ELV P+ P+ F + P KGVL YGPPG GKT+LAKAIA
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 145 KESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTS 201
E A FI+++ L++ WFG+++ V +F A + P ++F DE+DS R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDR 259
A + + + DG +T +N V ++ ATNRP +D AILR RL Q I +PD
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFS 307
K R ILK L+ V +++D ++LA + GF+G+DL E+C++A +
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 141/234 (60%), Gaps = 9/234 (3%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAK 141
+V ++ IGG + E+V LPLR P LF K +G P +G+LLYGPPGTGKT++A+
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALF---KAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 142 AIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS 201
A+A E+GA F + +MSK G+++ + F A K PAIIFIDE+D+ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDR 259
E + ++ + L DG Q A V+V+AATNRP+ +D A+ R R + +IG+PD
Sbjct: 317 HGEVERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313
R +IL++ K K+ +++D + +A G G+DL +C +AA +IR+ +D
Sbjct: 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 133/225 (59%), Gaps = 8/225 (3%)
Query: 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIA 144
V +E IGGLE +K+ L ELV P+ P+ F + P KGVL YGPPG GKT+LAKAIA
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 70
Query: 145 KESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RTS 201
E A FI+++ L++ WFG+++ V +F A + P ++F DE+DS R
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDR 259
A + + + DG +T +N V ++ ATNRP +D AILR RL Q I +PD
Sbjct: 131 GGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAA 304
K R ILK L+ V +++D ++LA + GF+G+DL E+C++A
Sbjct: 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 141/230 (61%), Gaps = 5/230 (2%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
+V++ + GLE K+AL E VILP++ P LF+ + P +G+LL+GPPGTGK+ LAKA+
Sbjct: 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT--PWRGILLFGPPGTGKSYLAKAV 187
Query: 144 AKESG-AVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD 202
A E+ + F ++ S+L+SKW G+++KLV +F LA + +P+IIFIDE+DS G R ++
Sbjct: 188 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 247
Query: 203 HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKER 262
EA +KTEF+ G D N ++VL ATN P LD AI RR + I +P+ R
Sbjct: 248 SEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR 306
Query: 263 AQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 311
A + ++ L + DF L +G++G+D+ + + A +R++
Sbjct: 307 AAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 141/234 (60%), Gaps = 9/234 (3%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAK 141
+V ++ IGG + E+V LPLR P LF K +G P +G+LLYGPPGTGKT++A+
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALF---KAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 142 AIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS 201
A+A E+GA F + +MSK G+++ + F A K PAIIFIDE+D+ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDR 259
E + ++ + L DG Q A V+V+AATNRP+ +D A+ R R + +IG+PD
Sbjct: 317 HGEVERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313
R +IL++ K K+ +++D + +A G G+DL +C +AA +IR+ +D
Sbjct: 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 141/234 (60%), Gaps = 9/234 (3%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAK 141
+V ++ IGG + E+V LPLR P LF K +G P +G+LLYGPPGTGKT++A+
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALF---KAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 142 AIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS 201
A+A E+GA F + +MSK G+++ + F A K PAIIFIDE+D+ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDR 259
E + ++ + L DG Q A V+V+AATNRP+ +D A+ R R + +IG+PD
Sbjct: 317 HGEVERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313
R +IL++ K K+ +++D + +A G G+DL +C +AA +IR+ +D
Sbjct: 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 141/234 (60%), Gaps = 9/234 (3%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAK 141
+V ++ IGG + E+V LPLR P LF K +G P +G+LLYGPPGTGKT++A+
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALF---KAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 142 AIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS 201
A+A E+GA F + +MSK G+++ + F A K PAIIFIDE+D+ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDR 259
E + ++ + L DG Q A V+V+AATNRP+ +D A+ R R + +IG+PD
Sbjct: 317 HGEVERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313
R +IL++ K K+ +++D + +A G G+DL +C +AA +IR+ +D
Sbjct: 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 141/230 (61%), Gaps = 5/230 (2%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
+V++ + GLE K+AL E VILP++ P LF+ + P +G+LL+GPPGTGK+ LAKA+
Sbjct: 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT--PWRGILLFGPPGTGKSYLAKAV 65
Query: 144 AKESG-AVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD 202
A E+ + F ++ S+L+SKW G+++KLV +F LA + +P+IIFIDE+DS G R ++
Sbjct: 66 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125
Query: 203 HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKER 262
EA +KTEF+ G D + ++VL ATN P LD AI RR + I +P+ R
Sbjct: 126 SEAARRIKTEFLVQMQGVGVDNDG-ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR 184
Query: 263 AQILKVIL-KGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 311
A + K+ L + DF L +G++G+D+ + + A +R++
Sbjct: 185 AAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 141/234 (60%), Gaps = 9/234 (3%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAK 141
+V ++ +GG + E+V LPLR P LF K +G P +G+LLYGPPGTGKT++A+
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALF---KAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 142 AIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS 201
A+A E+GA F + +MSK G+++ + F A K PAIIFIDE+D+ +R +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDR 259
E + ++ + L DG Q A V+V+AATNRP+ +D A+ R R + +IG+PD
Sbjct: 317 HGEVERRIVSQLLTLMDGLK--QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374
Query: 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313
R +IL++ K K+ +++D + +A G G+DL +C +AA +IR+ +D
Sbjct: 375 TGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 135/235 (57%), Gaps = 8/235 (3%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
++ F+ IGGL + L E++ LPL+ PE+F + P KGVLLYGPPGTGKT+LAKA+
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAV 235
Query: 144 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RT 200
A GA FI S ++ K+ G++ +++ +F+ A + +P IIF+DEVD+ G+R T
Sbjct: 236 AATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGT 295
Query: 201 SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPD 258
S + E + DGF D + ++ ATNRP LD A+LR RL + EI +P+
Sbjct: 296 SADREIQRTLMELLTQMDGF--DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 259 RKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313
R +I K+ K DF+ + +GF G+D+ +A +F+IR+ D
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD 408
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 133/234 (56%), Gaps = 14/234 (5%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAK 141
DV + +GG + + L E+V LPL PE F+ LG P KG+LLYGPPGTGKT+ A+
Sbjct: 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFA---TLGIDPPKGILLYGPPGTGKTLCAR 261
Query: 142 AIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR--- 198
A+A + A FI V S L+ K+ G+ ++V +F +A + IIF DE+D+ G R
Sbjct: 262 AVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDD 321
Query: 199 -RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIG 255
D+E M E + DGF N +VM ATNRP+ LD A+LR R+ + E
Sbjct: 322 GAGGDNEVQRTM-LELITQLDGFDPRGNIKVMF--ATNRPNTLDPALLRPGRIDRKVEFS 378
Query: 256 MPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 309
+PD + RA I ++ K VE I ++ ++ LC TG++L VC +A F+IR
Sbjct: 379 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 142/242 (58%), Gaps = 10/242 (4%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
+V + IG LE I++ L ++ P+R P+ F L+ P GVLL GPPG GKT+LAKA+
Sbjct: 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAV 64
Query: 144 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH 203
A ESG FI+V+ L++ + G++++ V VF A P +IF DEVD+ +R +
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET 124
Query: 204 EALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKE 261
A + + + DG Q +V ++AATNRP +D AILR RL + +G+P +
Sbjct: 125 GASVRVVNQLLTEMDGLEARQ--QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182
Query: 262 RAQILKVILK-GEK--VEENIDFDYLAG--LCEGFTGSDLLEVCKQAAYFSIRELLDEER 316
R ILK I K G K ++ +++ + +AG C+ +TG+DL + ++A+ ++R+ + ++
Sbjct: 183 RLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQK 242
Query: 317 KG 318
G
Sbjct: 243 SG 244
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 131/229 (57%), Gaps = 10/229 (4%)
Query: 87 FESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE 146
+ +GGL+ + L E ++LP++R + F + P KG L+YGPPGTGKT+LA+A A +
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARACAAQ 238
Query: 147 SGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR----RTSD 202
+ A F+ + L+ + G+ KLV F+LA + P IIFIDE+D+ +R ++ D
Sbjct: 239 TNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGD 298
Query: 203 HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRK 260
E M E + DGF++D RV VLAATNR LD A+LR RL + E +P
Sbjct: 299 REVQRTM-LELLNQLDGFSSDD--RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED 355
Query: 261 ERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 309
RAQIL++ + +++I++ LA + F G+ L V +A ++R
Sbjct: 356 SRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 128/233 (54%), Gaps = 9/233 (3%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
DV + +GGL+ KQ + E V LPL + +L+ + P +GVLLYGPPGTGKTML KA+
Sbjct: 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAV 226
Query: 144 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR---RT 200
A + A FI V S + K+ G+ ++V VF LA + P+IIFIDEVDS +R +T
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 286
Query: 201 SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEI-GMP 257
+ + E + DGF DQ+ V V+ ATNR LD A+LR RL + E +
Sbjct: 287 GSDREVQRILIELLTQMDGF--DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLR 344
Query: 258 DRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310
DR+ER I I + D D L + +G+ + + ++A ++R+
Sbjct: 345 DRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 134/234 (57%), Gaps = 12/234 (5%)
Query: 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143
D ++ +GGL + + E++ LP++ PELF + P KGV+LYGPPGTGKT+LA+A+
Sbjct: 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPPGTGKTLLARAV 202
Query: 144 AKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT--- 200
A + FI V + L+ K+ G+ ++V +F +A + P+IIF+DE+DS +G R
Sbjct: 203 AHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS-IGSTRVEGS 261
Query: 201 --SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGM 256
D E M E + DGF T +N ++++ ATNR LD A+LR R+ + E
Sbjct: 262 GGGDSEVQRTM-LELLNQLDGFETSKNIKIIM--ATNRLDILDPALLRPGRIDRKIEFPP 318
Query: 257 PDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310
P RA+IL++ + + I+ +A G +G+D+ VC +A +++RE
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 141/249 (56%), Gaps = 15/249 (6%)
Query: 78 INPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQ--KGVLLYGPPGTG 135
IN + +V F+ + G E K+ + E+V L+ PE +++ LG + KGVLL GPPGTG
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYAN---LGAKIPKGVLLVGPPGTG 56
Query: 136 KTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFL 195
KT+LAKA+A E+ F ++ S+ + + G V +F A K P+IIFIDE+D+ +
Sbjct: 57 KTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA-I 115
Query: 196 GQRRTSDHEALTNMKTE-----FMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RL 248
G+ R + N + E +A DGF + +NA V+VLAATNRP LD A++R R
Sbjct: 116 GKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNRPEILDPALMRPGRF 174
Query: 249 PQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSI 308
+ + PD R +ILKV +KG K+ +++ +A L G G+DL + +AA +
Sbjct: 175 DRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAG 234
Query: 309 RELLDEERK 317
R E R+
Sbjct: 235 RNNQKEVRQ 243
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 8/229 (3%)
Query: 87 FESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE 146
+ IGGLE+ Q + E V LPL PEL+ + P KGV+LYG PGTGKT+LAKA+A +
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQ 239
Query: 147 SGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD---H 203
+ A F+ + S L+ K+ GD +L +F +A + P+I+FIDE+D+ +R S+
Sbjct: 240 TSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGE 299
Query: 204 EALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKE 261
+ E + DGF D V V+ ATN+ LD A++R R+ + PD
Sbjct: 300 REIQRTMLELLNQLDGF--DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLST 357
Query: 262 RAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310
+ +IL + + E+++ + L + +G+D+ +C +A ++RE
Sbjct: 358 KKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 13/240 (5%)
Query: 77 VINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGT 134
++ D I F + G + K+ + ELV LR P F GK+ KGVL+ GPPGT
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKI---PKGVLMVGPPGT 56
Query: 135 GKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF 194
GKT+LAKAIA E+ F + S+ + + G V +F A K P IIFIDE+D+
Sbjct: 57 GKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 116
Query: 195 LGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLP 249
QR H+ + + DGF + N ++V+AATNRP LD A+LR R
Sbjct: 117 GRQRGAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFD 174
Query: 250 QAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 309
+ +G+PD + R QILKV ++ + +ID +A GF+G+DL + +AA F+ R
Sbjct: 175 RQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 128/236 (54%), Gaps = 11/236 (4%)
Query: 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIA 144
V F+ +GG E + L E+V L+ P F+ P KG+LL GPPGTGKT+LA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTLLARAVA 70
Query: 145 KESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS--- 201
E+ F ++ S+ + + G V +F+ A P I+FIDE+D+ +G+ R +
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRHRGAGLG 129
Query: 202 -DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPD 258
H+ + + DGF D ++V+AATNRP LD A+LR R + + PD
Sbjct: 130 GGHDEREQTLNQLLVEMDGF--DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187
Query: 259 RKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314
R +IL++ + + + E+++ + +A GF G+DL + +AA + RE D+
Sbjct: 188 MLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 11/236 (4%)
Query: 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIA 144
V F+ +GG E + L E+V L+ P F+ P KG+LL GPPGTG T+LA+A+A
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATLLARAVA 70
Query: 145 KESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS--- 201
E+ F ++ S+ + + G V +F+ A P I+FIDE+D+ +G+ R +
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRHRGAGLG 129
Query: 202 -DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPD 258
H+ + + DGF D ++V+AATNRP LD A+LR R + + PD
Sbjct: 130 GGHDEREQTLNQLLVEMDGF--DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187
Query: 259 RKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314
R +IL++ + + + E+++ + +A GF G+DL + +AA + RE D+
Sbjct: 188 MLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 9/178 (5%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 183
KGVLL GPPG GKT LA+A+A E+ FI S+ + + G V +F A + P
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 184 AIIFIDEVDSFLGQRRTS----DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE 239
I+FIDE+D+ +G++R S ++ + + DGF D ++V+AATNRP
Sbjct: 134 CIVFIDEIDA-VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDI 190
Query: 240 LDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSD 295
LD A+LR R + I PD K R QIL++ +G+ + E++D LA GF G+D
Sbjct: 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 9/178 (5%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 183
KGVLL GPPG GKT LA+A+A E+ FI S+ + + G V +F A + P
Sbjct: 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 124
Query: 184 AIIFIDEVDSFLGQRRTS----DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE 239
I+FIDE+D+ +G++R S ++ + + DGF D ++V+AATNRP
Sbjct: 125 CIVFIDEIDA-VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDI 181
Query: 240 LDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSD 295
LD A+LR R + I PD K R QIL++ +G+ + E++D LA GF G+D
Sbjct: 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 9/178 (5%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 183
KGVLL GPPG GKT LA+A+A E+ FI S+ + + G V +F A + P
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 184 AIIFIDEVDSFLGQRRTSDHEALTNMK----TEFMALWDGFTTDQNARVMVLAATNRPSE 239
I+FIDE+D+ +G++R S + + + + DGF D ++V+AATNRP
Sbjct: 134 CIVFIDEIDA-VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDI 190
Query: 240 LDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSD 295
LD A+LR R + I PD K R QIL++ +G+ + E++D LA GF G+D
Sbjct: 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 129/240 (53%), Gaps = 20/240 (8%)
Query: 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQ--KGVLLYGPPGTGKTMLA 140
+ V F+ + G+ K + E V L+ PE F LG + KG LL GPPG GKT+LA
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQ---LGAKVPKGALLLGPPGCGKTLLA 56
Query: 141 KAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT 200
KA+A E+ F+ + + + G V ++F A P I++IDE+D+ +G++R+
Sbjct: 57 KAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDA-VGKKRS 115
Query: 201 SDHEALTNMKTE-----FMALWDGF-TTDQNARVMVLAATNRPSELDEAILR--RLPQAF 252
+ +N + E + DG TTD V+VLA+TNR LD A++R RL +
Sbjct: 116 TTMSGFSNTEEEQTLNQLLVEMDGMGTTDH---VIVLASTNRADILDGALMRPGRLDRHV 172
Query: 253 EIGMPDRKERAQILKVILKGEKVEENIDF--DYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310
I +P +ER +I + LK K+ ++ F LA L GF+G+D+ +C +AA + RE
Sbjct: 173 FIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 9/178 (5%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQP 183
KGVLL GPPG GKT LA+A+A E+ FI S+ + + G V +F A + P
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109
Query: 184 AIIFIDEVDSFLGQRRTSDHEALTNMK----TEFMALWDGFTTDQNARVMVLAATNRPSE 239
I+FIDE+D+ +G++R S + + + + DGF D ++V+AATNRP
Sbjct: 110 CIVFIDEIDA-VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDI 166
Query: 240 LDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSD 295
LD A+LR R + I PD K R QIL++ +G+ + E++D LA GF G+D
Sbjct: 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQ-KLVAAVFSLAYK 180
P VLL GPP +GKT LA IA+ES FI + + M + A+ + + +F AYK
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK 121
Query: 181 LQPAIIFIDEVDSFL 195
Q + + +D+++ L
Sbjct: 122 SQLSCVVVDDIERLL 136
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 256 MPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 309
+PD + RA I ++ K VE I ++ ++ LC TG++L VC +A F+IR
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 60
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQ-KLVAAVFSLAYK 180
P VLL GPP +GKT LA IA+ES FI + + M + A+ + + +F AYK
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK 122
Query: 181 LQPAIIFIDEVDSFL 195
Q + + +D+++ L
Sbjct: 123 SQLSCVVVDDIERLL 137
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI-SNLMSKWFGDAQKLVAAVFSLAYK 180
P + +LL+GPPG GKT LA IA E G +N+R+ S + GD +AA+ LA
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGPAIEKPGD----LAAI--LANS 87
Query: 181 LQPA-IIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD----QNARVMVLAATN 235
L+ I+FIDE+ Q + A+ + + + + G + R ++ AT
Sbjct: 88 LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATT 146
Query: 236 RPSELDEAILRRL 248
RP + +L R
Sbjct: 147 RPGLITAPLLSRF 159
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI-SNLMSKWFGDAQKLVAAVFSLAYK 180
P + +LL+GPPG GKT LA IA E G +N+R+ S + GD +AA+ LA
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGPAIEKPGD----LAAI--LANS 87
Query: 181 LQPA-IIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD----QNARVMVLAATN 235
L+ I+FIDE+ Q + A+ + + + + G + R ++ AT
Sbjct: 88 LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATT 146
Query: 236 RPSELDEAILRRL 248
RP + +L R
Sbjct: 147 RPGLITAPLLSRF 159
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 20/113 (17%)
Query: 92 GLETIKQALYE-LVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV 150
GLE +K+ + E L + L + L GP + L GPPG GKT LAK+IAK G
Sbjct: 85 GLEKVKERILEYLAVQKLTK-------SLKGPI--LCLAGPPGVGKTSLAKSIAKSLGRK 135
Query: 151 FINVRISNLM--SKWFGDAQKLVAAV-------FSLAYKLQPAIIFIDEVDSF 194
F+ + + + S+ G + V A+ A KL P + +DE+D
Sbjct: 136 FVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKM 187
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI-SNLMSKWFGDAQKLVAAVFSLAYK 180
P + +LL+GPPG GKT LA IA E G +N+R+ S + GD +AA+ LA
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELG---VNLRVTSGPAIEKPGD----LAAI--LANS 87
Query: 181 LQPA-IIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD----QNARVMVLAATN 235
L+ I+FIDE+ Q + A+ + + + + G + R ++ AT
Sbjct: 88 LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIV-IGQGPAARTIRLELPRFTLIGATT 146
Query: 236 RPSELDEAILRRL 248
RP + +L R
Sbjct: 147 RPGLITAPLLSRF 159
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 112 ELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA 149
EL K+ G + VLL GPPGTGKT LA AIA+E G+
Sbjct: 54 ELIKSKKMAG--RAVLLAGPPGTGKTALALAIAQELGS 89
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 115 SHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM-SKWFGD-----AQ 168
S+G LG + +LL GP G+GKT+LA+ +A+ F + L + + G+ Q
Sbjct: 44 SNGVELG-KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQ 102
Query: 169 KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALT 207
KL+ K Q I++ID++D R SD+ ++T
Sbjct: 103 KLLQKCDYDVQKAQRGIVYIDQIDKI---SRKSDNPSIT 138
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 115 SHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM-SKWFGD-----AQ 168
S+G LG + +LL GP G+GKT+LA+ +A+ F + L + + G+ Q
Sbjct: 44 SNGVELG-KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQ 102
Query: 169 KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALT 207
KL+ K Q I++ID++D R SD+ ++T
Sbjct: 103 KLLQKCDYDVQKAQRGIVYIDQIDKI---SRKSDNPSIT 138
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 258 DRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 309
D + RA I ++ K VE I ++ ++ LC TG++L VC +A F+IR
Sbjct: 2 DLEGRANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIR 53
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVF-------- 175
K +L+ GP G GKT +A+ +AK + A FI V + G K V ++
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDSAG 108
Query: 176 -SLAYKLQPAIIFIDEVDSFLGQRRTSDHE-ALTNMKTEFMALWDGFTTD------QNAR 227
++ Q I+FIDE+D + S + + ++ + + L +G T +
Sbjct: 109 GAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH 168
Query: 228 VMVLAA----TNRPSELDEAILRRLPQAFEI 254
++ +A+ RPS+L + RLP E+
Sbjct: 169 ILFIASGAFQVARPSDLIPELQGRLPIRVEL 199
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 112 ELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA 149
EL K G + VLL GPPGTGKT LA AIA+E G+
Sbjct: 68 ELIKSKKXAG--RAVLLAGPPGTGKTALALAIAQELGS 103
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 15/91 (16%)
Query: 126 VLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS----KWFG-DAQKLVAAVFSLA-- 178
+LL GP G+GKT++A+ +AK + I + IS+ S + G D + ++ + +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKH---LDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 179 --YKLQPAIIFIDEVDSFLGQRRTSDHEALT 207
K Q I+FIDE+D R S++ ++T
Sbjct: 132 NVQKAQKGIVFIDEIDKI---SRLSENRSIT 159
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 117 GKLLGPQKGVLLYGPPGTGKTMLAKAI---AKESGAVFINVRISNLMSKWFGDAQKLVAA 173
G L P + +YG GTGKT L +A AK+ G I + +K
Sbjct: 33 GSLYNP---IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTIN 89
Query: 174 VFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233
F YK ++ +D+V G+ RT + EF +++ + + ++LA+
Sbjct: 90 EFRNMYK-SVDLLLLDDVQFLSGKERT---------QIEFFHIFNTLYLLE--KQIILAS 137
Query: 234 TNRPSELDEAILRRLPQAFEIGM-----PDRKERAQILKVILKGEKVE---ENIDF 281
P +LD + RL FE G+ D K R +I+K LK +E E ID+
Sbjct: 138 DRHPQKLD-GVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDY 192
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 27/176 (15%)
Query: 117 GKLLGPQKGVLLYGPPGTGKTMLAKAI---AKESGAVFINVRISNLMSKWFGDAQKLVAA 173
G L P + +YG GTGKT L +A AK+ G I + +K
Sbjct: 34 GSLYNP---IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTIN 90
Query: 174 VFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233
F YK ++ +D+V G+ RT + EF +++ + + ++LA+
Sbjct: 91 EFRNMYK-SVDLLLLDDVQFLSGKERT---------QIEFFHIFNTLYLLE--KQIILAS 138
Query: 234 TNRPSELDEAILRRLPQAFEIGM-----PDRKERAQILKVILKGEKVE---ENIDF 281
P +LD + RL FE G+ D K R +I+K LK +E E ID+
Sbjct: 139 DRHPQKLD-GVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDY 193
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 24/163 (14%)
Query: 117 GKLLGPQKGVLLYGPPGTGKTMLAKAI---AKESGAVFINVRISNLMSKWFGDAQKLVAA 173
G L P + +YG GTGKT L +A AK+ G I + +K
Sbjct: 34 GSLYNP---IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHLKKGTIN 90
Query: 174 VFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233
F YK ++ +D+V G+ RT + EF +++ + + ++LA+
Sbjct: 91 EFRNXYK-SVDLLLLDDVQFLSGKERT---------QIEFFHIFNTLYLLE--KQIILAS 138
Query: 234 TNRPSELDEAILRRLPQAFEIGM-----PDRKERAQILKVILK 271
P +LD + RL FE G+ D K R +I+K LK
Sbjct: 139 DRHPQKLD-GVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLK 180
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 107 PLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154
PL PE +L P +LL G PG GKT L K +A +SG +INV
Sbjct: 2 PLGSPEF-----MLLPN--ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 126 VLLYGPPGTGKTMLAKAIAKESGAVFINV 154
+LL G PG GKT L K +A +SG +INV
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYK 180
G ++L+GPPGTGKT LA+ IA+ + A RIS + S K + A +
Sbjct: 48 GHLHSMILWGPPGTGKTTLAEVIARYANADV--ERISAVTS-----GVKEIREAIERARQ 100
Query: 181 LQPA----IIFIDEVDSF 194
+ A I+F+DEV F
Sbjct: 101 NRNAGRRTILFVDEVHRF 118
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI-----NVRISNLMSKWFGDAQKLVAAVF 175
G + +LYGPPG GKT A +A+E G + +VR L++ +A ++ V
Sbjct: 75 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVG 134
Query: 176 SLAYKLQPA-------IIFIDEVDSFLGQRR 199
+ + +I +DEVD G R
Sbjct: 135 YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR 165
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 87 FESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE 146
F+ G E+IK+ L + +R E H +L GP G GKT LA I+ E
Sbjct: 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDH---------ILFSGPAGLGKTTLANIISYE 78
Query: 147 SGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEV 191
A I + + L A + +L+ + I+FIDE+
Sbjct: 79 XSA-----NIKTTAAPXIEKSGDLAAILTNLS---EGDILFIDEI 115
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKESG 148
LL ++G++L GPPG+GKTM+ + S
Sbjct: 1044 LLNSKRGIILCGPPGSGKTMIMNNALRNSS 1073
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKESG 148
LL ++G++L GPPG+GKTM+ + S
Sbjct: 1263 LLNSKRGIILCGPPGSGKTMIMNNALRNSS 1292
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154
K +L+ GP G GKT +A+ +AK + A FI V
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154
K +L+ GP G GKT +A+ +AK + A FI V
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKV 80
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154
K +L+ GP G GKT +A+ +AK + A FI V
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKV 87
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154
K +L+ GP G GKT +A+ +AK + A FI V
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 127 LLYGPPGTGKTMLAKAIAKE----------SGAVFINVRISNLM--SKWFGDAQKLVAAV 174
+L G PG GKT + + +A+ G +++++ +L+ +K+ G+ ++ + AV
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 175 FSLAYKLQ-PAIIFIDEVDSFLG 196
+ Q I+FIDE+ + +G
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVG 140
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 30/177 (16%)
Query: 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAV------ 174
G + +YG G GKT L ++I ++R+ + S+ F LV ++
Sbjct: 128 GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDSMKEGKLN 185
Query: 175 -FSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233
F Y+ + I+ ID+V +G+ T ++TE ++ + + +V+ +
Sbjct: 186 EFREKYRKKVDILLIDDVQFLIGK---------TGVQTELFHTFNEL--HDSGKQIVICS 234
Query: 234 TNRPSELDEAILRRLPQAFEIGM------PDRKERAQILKVILK---GEKVEENIDF 281
P +L E RL F++G+ PD + R I + +L+ GE EE ++F
Sbjct: 235 DREPQKLSE-FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNF 290
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With
Reduced Fad
Length = 384
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 32/125 (25%)
Query: 192 DSFLGQRRTSDHEALTNMKTE-FMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQ 250
DS + +T + EAL + E + A + G+T Q +PSEL +IL+RLP
Sbjct: 126 DSTIADPQTFEEEALRFIGKELYEAFFKGYTIKQWGM--------QPSELPASILKRLPV 177
Query: 251 AFEI----------GMPDRKERAQILKVILKGEK----------VEENIDFDYL--AGLC 288
F GMP + Q++K IL E VEE +D++ +G
Sbjct: 178 RFNYDDNYFNHKFQGMP-KCGYTQMIKSILNHENIKVDLQREFIVEERTHYDHVFYSGPL 236
Query: 289 EGFTG 293
+ F G
Sbjct: 237 DAFYG 241
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 32/125 (25%)
Query: 192 DSFLGQRRTSDHEALTNMKTE-FMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQ 250
DS + +T + EAL + E + A + G+T Q +PSEL +IL+RLP
Sbjct: 126 DSTIADPQTFEEEALRFIGKELYEAFFKGYTIKQWGM--------QPSELPASILKRLPV 177
Query: 251 AFEI----------GMPDRKERAQILKVILKGEK----------VEENIDFDYL--AGLC 288
F GMP + Q++K IL E VEE +D++ +G
Sbjct: 178 RFNYDDNYFNHKFQGMP-KCGYTQMIKSILNHENIKVDLQREFIVEERTHYDHVFYSGPL 236
Query: 289 EGFTG 293
+ F G
Sbjct: 237 DAFYG 241
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 112 ELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG 148
E+ GK+ G + VL+ G PGTGKT +A +A+ G
Sbjct: 61 EMIREGKIAG--RAVLIAGQPGTGKTAIAMGMAQALG 95
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 30/177 (16%)
Query: 127 LLYGPPGTGKTMLAKAIAKE----------SGAVFINVRISNLM--SKWFGDAQKLVAAV 174
LL G G GKT +A+ +A + ++ I +L+ +K+ GD +K A+
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 175 FSLAYKLQPAIIFIDEVDSFLGQRRTSDHEA-LTNMKTEFMALWDGFTTDQNARVMVLAA 233
+ +I+FIDE+ + +G S + N+ ++ + ++ V+ +
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---------SGKIRVIGS 321
Query: 234 TNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLA 285
T E D A+ RR Q +I P +E QI+ + K E + D Y A
Sbjct: 322 TTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGL--KPKYEAHHDVRYTA 375
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154
K +L GP G GKT +A+ +AK + A FI V
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKV 81
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 127 LLYGPPGTGKTMLAKAIAKE----------SGAVFINVRISNLM--SKWFGDAQKLVAAV 174
+L G PG GKT + + +A+ G +++++ +L+ +K+ G+ ++ + AV
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 175 FSLAYKLQ-PAIIFIDEVDSFLG 196
+ Q I+FIDE+ + +G
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVG 277
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 104 VILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE 146
VI +R+ GKL P +L YGPPGTGKT A+A+E
Sbjct: 33 VITTVRK--FVDEGKL--PH--LLFYGPPGTGKTSTIVALARE 69
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 15/119 (12%)
Query: 126 VLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISNLMSKWFGDAQKLVAAVFS 176
+L+ G PGT K+ + + I++ + G+ + + + K G+ L A
Sbjct: 330 ILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYY-LEAGALV 388
Query: 177 LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATN 235
LA I IDE+D + R + HEA+ G NAR V+AA N
Sbjct: 389 LA---DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKA--GIVAKLNARAAVIAAGN 442
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 257 PDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310
P+ + R ILK+ + + I+ +A L G +G+++ VC +A +++RE
Sbjct: 3 PNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRE 56
>pdb|4E2I|A Chain A, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|B Chain B, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|C Chain C, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|D Chain D, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|E Chain E, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|F Chain F, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|G Chain G, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|H Chain H, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|I Chain I, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|J Chain J, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|K Chain K, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
pdb|4E2I|L Chain L, The Complex Structure Of The Sv40 Helicase Large T Antigen
And P68 Subunit Of Dna Polymerase Alpha-Primase
Length = 362
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 42 REASKKALEHKKEISKRLGRPLIQTNPYEDVIACDVINPDHIDVEFESIGGL---ETIKQ 98
++A L K+ S +L R + TN + D++ D +D+ F S G E +
Sbjct: 73 QQAVDTVLAKKRVDSLQLTREQMLTNRFNDLL-------DRMDIMFGSTGSADIEEWMAG 125
Query: 99 ALYELVILPLRRPELFSHGKLLG---PQKGVLLY-GPPGTGKTMLAKAIAKESGAVFINV 154
+ +LP ++ K + P+K L+ GP +GKT LA A+ + G +NV
Sbjct: 126 VAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 185
Query: 155 RI 156
+
Sbjct: 186 NL 187
>pdb|1N25|A Chain A, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
pdb|1N25|B Chain B, Crystal Structure Of The Sv40 Large T Antigen Helicase
Domain
Length = 368
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 42 REASKKALEHKKEISKRLGRPLIQTNPYEDVIACDVINPDHIDVEFESIGGL---ETIKQ 98
++A L K+ S +L R + TN + D++ D +D+ F S G E +
Sbjct: 79 QQAVDTVLAKKRVDSLQLTREQMLTNRFNDLL-------DRMDIMFGSTGSADIEEWMAG 131
Query: 99 ALYELVILPLRRPELFSHGKLLG---PQKGVLLY-GPPGTGKTMLAKAIAKESGAVFINV 154
+ +LP ++ K + P+K L+ GP +GKT LA A+ + G +NV
Sbjct: 132 VAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 191
Query: 155 RI 156
+
Sbjct: 192 NL 193
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 104 VILPLRRPELFSHGKLLGPQKGVLLYGP-PGTGKTMLAKAIAKESGA--VFIN 153
ILP E F G ++L+ P PGTGKT +AKA+ + A +F+N
Sbjct: 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80
>pdb|2H1L|A Chain A, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|B Chain B, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|C Chain C, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|D Chain D, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|E Chain E, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|F Chain F, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|G Chain G, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|H Chain H, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|I Chain I, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|J Chain J, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|K Chain K, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|L Chain L, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
Length = 370
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 42 REASKKALEHKKEISKRLGRPLIQTNPYEDVIACDVINPDHIDVEFESIGGL---ETIKQ 98
++A L K+ S +L R + TN + D++ D +D+ F S G E +
Sbjct: 81 QQAVDTVLAKKRVDSLQLTREQMLTNRFNDLL-------DRMDIMFGSTGSADIEEWMAG 133
Query: 99 ALYELVILPLRRPELFSHGKLLG---PQKGVLLY-GPPGTGKTMLAKAIAKESGAVFINV 154
+ +LP ++ K + P+K L+ GP +GKT LA A+ + G +NV
Sbjct: 134 VAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 193
Query: 155 RI 156
+
Sbjct: 194 NL 195
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
VLL GPPG GKT LA IA E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1SVL|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVL|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Adp
pdb|1SVM|A Chain A, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|B Chain B, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|C Chain C, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|D Chain D, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|E Chain E, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVM|F Chain F, Co-Crystal Structure Of Sv40 Large T Antigen Helicase
Domain And Atp
pdb|1SVO|A Chain A, Structure Of Sv40 Large T Antigen Helicase Domain
pdb|1SVO|B Chain B, Structure Of Sv40 Large T Antigen Helicase Domain
Length = 377
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 42 REASKKALEHKKEISKRLGRPLIQTNPYEDVIACDVINPDHIDVEFESIGGL---ETIKQ 98
++A L K+ S +L R + TN + D++ D +D+ F S G E +
Sbjct: 88 QQAVDTVLAKKRVDSLQLTREQMLTNRFNDLL-------DRMDIMFGSTGSADIEEWMAG 140
Query: 99 ALYELVILPLRRPELFSHGKLLG---PQKGVLLY-GPPGTGKTMLAKAIAKESGAVFINV 154
+ +LP ++ K + P+K L+ GP +GKT LA A+ + G +NV
Sbjct: 141 VAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 200
Query: 155 RI 156
+
Sbjct: 201 NL 202
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
VLL GPPG GKT LA IA E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
VLL GPPG GKT LA IA E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
VLL GPPG GKT LA IA E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
VLL GPPG GKT LA IA E
Sbjct: 54 VLLAGPPGLGKTTLAHIIASE 74
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 257 PDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310
P+ + R ILK+ + + I+ +A L G +G+++ VC +A +++RE
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
+L YGPPGTGKT A+ KE
Sbjct: 61 MLFYGPPGTGKTSTILALTKE 81
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 192 DSFLGQRRTSDHEALTNMKTE-FMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQ 250
DS + +T + +AL + E + A + G+T Q +PSEL +IL+RLP
Sbjct: 126 DSTIADPQTFEEQALRFIGKELYEAFFKGYTIKQWGM--------QPSELPASILKRLPV 177
Query: 251 AFEI----------GMPDRKERAQILKVILKGEKVEENIDFDYLA 285
F GMP + Q++K IL E ++ ++ +++
Sbjct: 178 RFNYDDNYFNHKFQGMP-KCGYTQMIKSILNHENIKVDLQREFIV 221
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 123 QKGVLLYGPPGTGKTMLAKAIAK 145
++ VLL G PGTGK+ML +A+A+
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAE 82
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
VLL GPPG G+T LA IA E
Sbjct: 54 VLLAGPPGLGRTTLAHIIASE 74
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 126 VLLYGPPGTGKTMLAKAIAKESGAVFIN 153
++ GPPG GK AK +AKE G V I+
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 31/144 (21%)
Query: 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVF------INVRISNLMSKWFGDAQKLVAAVF 175
P + GP G GKT LA+A+A+ ++F I + +S M K +L V
Sbjct: 520 PIGSFIFLGPTGVGKTELARALAE---SIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVR 576
Query: 176 SLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR-------V 228
Y +++ +D ++ H + N+ L DG TD R +
Sbjct: 577 RKPY----SVVLLDAIEKA--------HPDVFNIL--LQVLEDGRLTDSKGRTVDFRNTI 622
Query: 229 MVLAATNRPSELDEAILRRLPQAF 252
+++ + SE D+ ++ L +AF
Sbjct: 623 LIMTSNVGASEKDK-VMGELKRAF 645
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 112 ELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG 148
E GK+ G + VL+ G PGTGKT +A A+ G
Sbjct: 76 EXIREGKIAG--RAVLIAGQPGTGKTAIAXGXAQALG 110
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 118 KLLGPQKGVLLYGPPGTGKTMLAKAIA 144
K G + + L+GP TGKT +A+AIA
Sbjct: 100 KKFGKRNTIWLFGPATTGKTNIAEAIA 126
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 118 KLLGPQKGVLLYGPPGTGKTMLAKAIA 144
K G + + L+GP TGKT +A+AIA
Sbjct: 99 KKFGKRNTIWLFGPATTGKTNIAEAIA 125
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 126 VLLYGPPGTGKTMLAKAIAK---ESGAVFIN 153
V++ GP G+GKT L +AI+ SG +FIN
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLPYSGNIFIN 63
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 126 VLLYGPPGTGKTMLAKAIAKESGAVFIN 153
V + GP GTGK+ +AK +A++ GA +++
Sbjct: 7 VAVDGPSGTGKSSVAKELARQLGASYLD 34
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
+L+ G PGTGKT +A+ IA E
Sbjct: 13 ILITGTPGTGKTSMAEMIAAE 33
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 121 GPQKGVLLYGPPGTGKTMLAKAIAKE 146
G +L GPPG GKT A A+A+E
Sbjct: 44 GSMPHLLFAGPPGVGKTTAALALARE 69
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 123 QKGVLLYGPPGTGKTMLAKAIAKE 146
QKG+ LYG G GK+ L A+A E
Sbjct: 152 QKGLYLYGDMGIGKSYLLAAMAHE 175
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153
K ++ G G+GK+ LA+A+AK+ VF++
Sbjct: 5 KNIVFIGFXGSGKSTLARALAKDLDLVFLD 34
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 127 LLYGPPGTGKTMLAKAIAKE----------SGAVFINVRISNLM--SKWFGDAQKLVAAV 174
+L G PG GKT + + +A + G +++ +S+L+ +K+ GD ++ + ++
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 175 FSLAYKLQPAII-FIDEVDSFLG 196
+ ++ FIDE+ + +G
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVG 129
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 127 LLYGPPGTGKTMLAKAIAKE----------SGAVFINVRISNLM--SKWFGDAQKLVAAV 174
+L G PG GKT + + +A+ G + + + L+ +K+ G+ ++ + V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 175 FS-LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD----GFTTDQNARVM 229
+ LA + I+FIDE+ + +G + NM +A + G TT R
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 166
Query: 230 VLAATNRPSELDEAILRRLPQAF 252
+ E D A+ RR + F
Sbjct: 167 I--------EKDAALERRFQKVF 181
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
+L GPPGTGKT A A+A++
Sbjct: 41 LLFSGPPGTGKTATAIALARD 61
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 126 VLLYGPPGTGKTMLAKAIAKE 146
+L GPPGTGKT A A+A++
Sbjct: 41 LLFSGPPGTGKTATAIALARD 61
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVF 151
P + V++ G G+GKT +A +A E+G F
Sbjct: 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 1472
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 217 WDGF---TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPD 258
WD + TT + V + PS++D+A LRR QAF + M D
Sbjct: 416 WDKWVQNTTHLDELVKTASLKGEPSDMDKAELRRRQQAFGLTMED 460
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 217 WDGF---TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPD 258
WD + TT + V + PS++D+A LRR QAF + M D
Sbjct: 416 WDKWVQNTTHLDELVKTASLKGEPSDMDKAELRRRQQAFGLTMED 460
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 105 ILPLRRPELFSHGKLLGPQ------KGVLLYGPPGTGKTMLAKAIAK 145
+LP R EL ++L P LLYG GTGKT +A+ + +
Sbjct: 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR 66
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKA 142
+ +F++ G + +Q +Y + P+ R L G VL YGP G GKT
Sbjct: 65 LKYQFDAFYGERSTQQDIYAGSVQPILR------HLLEGQNASVLAYGPTGAGKTHTMLG 118
Query: 143 IAKESGAV 150
++ G +
Sbjct: 119 SPEQPGVI 126
>pdb|1RZ0|A Chain A, Flavin Reductase Phea2 In Native State
pdb|1RZ0|B Chain B, Flavin Reductase Phea2 In Native State
pdb|1RZ0|C Chain C, Flavin Reductase Phea2 In Native State
pdb|1RZ0|D Chain D, Flavin Reductase Phea2 In Native State
pdb|1RZ0|E Chain E, Flavin Reductase Phea2 In Native State
pdb|1RZ0|F Chain F, Flavin Reductase Phea2 In Native State
pdb|1RZ0|G Chain G, Flavin Reductase Phea2 In Native State
pdb|1RZ0|H Chain H, Flavin Reductase Phea2 In Native State
pdb|1RZ1|A Chain A, Reduced Flavin Reductase Phea2 In Complex With Nad
pdb|1RZ1|B Chain B, Reduced Flavin Reductase Phea2 In Complex With Nad
pdb|1RZ1|C Chain C, Reduced Flavin Reductase Phea2 In Complex With Nad
pdb|1RZ1|D Chain D, Reduced Flavin Reductase Phea2 In Complex With Nad
pdb|1RZ1|E Chain E, Reduced Flavin Reductase Phea2 In Complex With Nad
pdb|1RZ1|F Chain F, Reduced Flavin Reductase Phea2 In Complex With Nad
pdb|1RZ1|G Chain G, Reduced Flavin Reductase Phea2 In Complex With Nad
pdb|1RZ1|H Chain H, Reduced Flavin Reductase Phea2 In Complex With Nad
Length = 161
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLG 121
+DV+FE +GGL IK AL ++ + + H +G
Sbjct: 90 VDVQFEELGGLPVIKDALAQISCQVVNEVQAGDHTLFIG 128
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 131 PPGTGKTMLAKAIAKESGAVFINV 154
PPGT + ++A+A+A+E+G V +V
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSV 170
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 258 DRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310
DR+++ I I + E +D + + +G+D+ +C+++ ++RE
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,932,049
Number of Sequences: 62578
Number of extensions: 443922
Number of successful extensions: 1672
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 127
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)