Query 016044
Match_columns 396
No_of_seqs 424 out of 3812
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0737 AAA+-type ATPase [Post 100.0 5.1E-59 1.1E-63 427.9 28.9 337 6-342 4-362 (386)
2 COG1222 RPT1 ATP-dependent 26S 100.0 4.8E-54 1E-58 392.8 24.9 246 81-341 144-394 (406)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 7.9E-54 1.7E-58 412.2 25.7 301 81-394 183-537 (802)
4 KOG0730 AAA+-type ATPase [Post 100.0 1.3E-52 2.8E-57 409.3 22.9 250 81-343 427-678 (693)
5 KOG0738 AAA+-type ATPase [Post 100.0 3.7E-52 8.1E-57 382.5 23.4 268 74-344 199-474 (491)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 8.1E-52 1.8E-56 398.4 26.2 259 82-343 505-773 (802)
7 KOG0736 Peroxisome assembly fa 100.0 4.4E-49 9.5E-54 388.1 25.2 268 74-343 658-936 (953)
8 KOG0739 AAA+-type ATPase [Post 100.0 2.2E-47 4.7E-52 340.0 17.9 264 77-343 122-420 (439)
9 KOG0734 AAA+-type ATPase conta 100.0 3.5E-44 7.5E-49 340.9 20.4 242 82-339 298-541 (752)
10 KOG0727 26S proteasome regulat 100.0 8.8E-43 1.9E-47 304.3 20.5 245 80-339 147-396 (408)
11 KOG0730 AAA+-type ATPase [Post 100.0 4.9E-43 1.1E-47 342.2 21.0 280 83-395 180-461 (693)
12 KOG0728 26S proteasome regulat 100.0 5.3E-42 1.1E-46 299.1 21.3 244 81-339 140-388 (404)
13 COG1223 Predicted ATPase (AAA+ 100.0 1.2E-41 2.5E-46 298.3 20.0 242 82-342 115-358 (368)
14 KOG0652 26S proteasome regulat 100.0 7.3E-42 1.6E-46 299.8 18.5 247 81-342 164-415 (424)
15 PTZ00454 26S protease regulato 100.0 1.4E-40 3E-45 322.6 25.8 247 80-341 137-388 (398)
16 KOG0735 AAA+-type ATPase [Post 100.0 2.8E-40 6E-45 323.3 27.1 230 84-316 663-894 (952)
17 KOG0740 AAA+-type ATPase [Post 100.0 1.3E-41 2.8E-46 324.0 16.7 261 81-343 146-408 (428)
18 KOG0726 26S proteasome regulat 100.0 1.7E-41 3.8E-46 301.5 15.8 244 82-340 179-427 (440)
19 KOG0729 26S proteasome regulat 100.0 2.2E-40 4.8E-45 291.3 18.4 246 81-341 170-420 (435)
20 COG0464 SpoVK ATPases of the A 100.0 1E-39 2.2E-44 329.4 25.7 251 79-343 233-487 (494)
21 TIGR01243 CDC48 AAA family ATP 100.0 1.5E-39 3.2E-44 341.4 27.7 259 82-343 447-714 (733)
22 KOG0731 AAA+-type ATPase conta 100.0 1.4E-39 3E-44 327.2 22.5 243 81-339 304-553 (774)
23 PRK03992 proteasome-activating 100.0 4.7E-39 1E-43 313.4 25.0 248 81-343 124-376 (389)
24 TIGR01243 CDC48 AAA family ATP 100.0 2.5E-38 5.5E-43 332.1 26.9 293 82-381 172-473 (733)
25 PTZ00361 26 proteosome regulat 100.0 3E-38 6.5E-43 308.0 23.6 246 81-341 176-426 (438)
26 CHL00195 ycf46 Ycf46; Provisio 100.0 1.6E-37 3.5E-42 307.2 25.5 241 81-342 221-466 (489)
27 COG0465 HflB ATP-dependent Zn 100.0 1.7E-37 3.6E-42 307.4 21.7 243 81-339 143-390 (596)
28 TIGR01241 FtsH_fam ATP-depende 100.0 1.8E-36 4E-41 305.0 23.6 246 79-340 46-296 (495)
29 TIGR01242 26Sp45 26S proteasom 100.0 1.1E-35 2.3E-40 288.7 24.8 244 81-339 115-363 (364)
30 TIGR03689 pup_AAA proteasome A 100.0 2.3E-35 5.1E-40 291.3 24.2 276 76-365 170-501 (512)
31 CHL00176 ftsH cell division pr 100.0 1.2E-34 2.6E-39 295.2 25.7 243 81-339 176-423 (638)
32 KOG0651 26S proteasome regulat 100.0 7.8E-36 1.7E-40 267.8 13.9 249 77-340 121-374 (388)
33 KOG0732 AAA+-type ATPase conta 100.0 1.6E-33 3.5E-38 290.3 19.7 260 83-345 260-531 (1080)
34 PRK10733 hflB ATP-dependent me 100.0 1.2E-32 2.5E-37 283.7 25.7 247 79-341 143-394 (644)
35 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.2E-31 2.6E-36 287.2 20.5 202 120-339 1627-1877(2281)
36 KOG0736 Peroxisome assembly fa 100.0 1.1E-30 2.4E-35 258.3 22.8 257 123-384 431-695 (953)
37 PLN00020 ribulose bisphosphate 100.0 9.4E-31 2E-35 243.8 19.7 219 84-308 111-352 (413)
38 KOG0741 AAA+-type ATPase [Post 100.0 1E-31 2.2E-36 255.9 13.3 298 83-391 214-537 (744)
39 KOG0735 AAA+-type ATPase [Post 100.0 1.5E-27 3.2E-32 234.3 20.1 277 88-395 408-694 (952)
40 CHL00181 cbbX CbbX; Provisiona 99.9 9.1E-24 2E-28 197.4 18.5 236 88-333 23-280 (287)
41 TIGR02880 cbbX_cfxQ probable R 99.9 1E-22 2.2E-27 190.4 18.4 236 89-334 23-280 (284)
42 TIGR02881 spore_V_K stage V sp 99.9 1.5E-22 3.2E-27 187.8 18.6 219 86-314 4-245 (261)
43 COG0464 SpoVK ATPases of the A 99.9 4E-22 8.7E-27 201.5 22.5 262 107-385 3-266 (494)
44 KOG0744 AAA+-type ATPase [Post 99.9 8.8E-23 1.9E-27 184.8 12.2 237 86-338 140-413 (423)
45 KOG0742 AAA+-type ATPase [Post 99.9 9.8E-22 2.1E-26 182.9 17.2 208 84-302 351-587 (630)
46 PF00004 AAA: ATPase family as 99.9 1.8E-21 4E-26 161.2 13.7 130 126-256 1-132 (132)
47 KOG0743 AAA+-type ATPase [Post 99.9 3.6E-20 7.7E-25 176.1 18.5 222 81-314 195-430 (457)
48 PF05496 RuvB_N: Holliday junc 99.8 5.4E-21 1.2E-25 167.9 11.1 190 84-302 20-224 (233)
49 TIGR02902 spore_lonB ATP-depen 99.8 2E-19 4.3E-24 181.9 17.1 269 20-338 7-331 (531)
50 TIGR02639 ClpA ATP-dependent C 99.8 2.5E-19 5.5E-24 188.2 18.4 224 84-339 178-429 (731)
51 COG2256 MGS1 ATPase related to 99.8 1E-18 2.3E-23 163.5 19.3 168 84-290 20-204 (436)
52 TIGR00635 ruvB Holliday juncti 99.8 8.6E-19 1.9E-23 166.6 17.4 220 86-339 2-229 (305)
53 PRK00080 ruvB Holliday junctio 99.8 1.1E-18 2.4E-23 167.2 18.0 218 83-341 20-252 (328)
54 TIGR00763 lon ATP-dependent pr 99.8 6.1E-19 1.3E-23 186.3 16.6 234 89-339 321-586 (775)
55 COG2255 RuvB Holliday junction 99.8 1.3E-18 2.7E-23 155.9 15.8 192 82-302 20-226 (332)
56 PRK12323 DNA polymerase III su 99.8 1.1E-18 2.3E-23 174.8 17.0 192 82-305 10-231 (700)
57 PRK14956 DNA polymerase III su 99.8 3E-18 6.6E-23 167.7 18.6 187 82-304 12-227 (484)
58 PRK07003 DNA polymerase III su 99.8 4.9E-18 1.1E-22 172.1 19.7 188 82-305 10-226 (830)
59 PRK11034 clpA ATP-dependent Cl 99.8 9.4E-18 2E-22 174.6 19.1 224 85-340 183-434 (758)
60 PRK14960 DNA polymerase III su 99.8 2.2E-17 4.7E-22 165.9 19.4 186 83-304 10-224 (702)
61 PRK07994 DNA polymerase III su 99.8 1.9E-17 4.1E-22 168.4 19.0 190 83-304 11-225 (647)
62 PRK14958 DNA polymerase III su 99.8 1.6E-17 3.4E-22 166.7 17.9 188 82-305 10-226 (509)
63 PRK14949 DNA polymerase III su 99.8 1.1E-16 2.3E-21 165.4 23.9 192 83-304 11-225 (944)
64 PRK14962 DNA polymerase III su 99.8 2.5E-17 5.4E-22 163.6 18.4 184 82-301 8-220 (472)
65 PRK14961 DNA polymerase III su 99.8 5.3E-17 1.1E-21 157.5 18.9 186 83-304 11-225 (363)
66 PRK06645 DNA polymerase III su 99.7 9E-17 2E-21 160.2 18.9 196 81-306 14-236 (507)
67 TIGR03345 VI_ClpV1 type VI sec 99.7 9.3E-17 2E-21 170.2 19.9 186 84-293 183-391 (852)
68 PRK08691 DNA polymerase III su 99.7 8.3E-17 1.8E-21 163.1 18.4 188 82-305 10-226 (709)
69 PRK14964 DNA polymerase III su 99.7 7.5E-17 1.6E-21 159.6 17.7 188 82-305 7-223 (491)
70 PRK04195 replication factor C 99.7 9.7E-17 2.1E-21 161.4 18.8 189 81-303 7-203 (482)
71 PRK14951 DNA polymerase III su 99.7 1.1E-16 2.4E-21 162.4 17.7 187 83-305 11-231 (618)
72 COG0466 Lon ATP-dependent Lon 99.7 1.3E-16 2.9E-21 158.8 17.3 257 89-365 324-612 (782)
73 PRK14969 DNA polymerase III su 99.7 1.8E-16 3.8E-21 160.0 18.1 187 83-305 11-226 (527)
74 PRK07940 DNA polymerase III su 99.7 2.2E-16 4.8E-21 153.4 17.7 187 86-301 3-216 (394)
75 PRK14957 DNA polymerase III su 99.7 3.4E-16 7.5E-21 157.0 19.4 186 83-304 11-225 (546)
76 PRK13342 recombination factor 99.7 3.8E-16 8.3E-21 154.1 19.2 181 84-304 8-201 (413)
77 PRK10865 protein disaggregatio 99.7 1.8E-16 3.9E-21 168.5 17.4 168 84-275 174-359 (857)
78 PRK05563 DNA polymerase III su 99.7 4.2E-16 9.1E-21 158.4 19.3 187 82-304 10-225 (559)
79 PRK14963 DNA polymerase III su 99.7 5.2E-16 1.1E-20 155.4 19.5 186 82-303 8-221 (504)
80 PLN03025 replication factor C 99.7 3.1E-16 6.8E-21 149.7 16.8 177 81-290 6-192 (319)
81 KOG2028 ATPase related to the 99.7 3.8E-16 8.3E-21 144.0 16.4 211 84-339 134-368 (554)
82 PRK14952 DNA polymerase III su 99.7 6.6E-16 1.4E-20 156.3 19.6 191 82-304 7-224 (584)
83 KOG2004 Mitochondrial ATP-depe 99.7 1.9E-16 4E-21 157.0 14.7 173 89-271 412-597 (906)
84 PRK00149 dnaA chromosomal repl 99.7 3.8E-16 8.2E-21 155.9 16.9 198 83-305 117-328 (450)
85 PRK14959 DNA polymerase III su 99.7 8.3E-16 1.8E-20 155.2 19.4 187 82-301 10-222 (624)
86 PRK07133 DNA polymerase III su 99.7 1.3E-15 2.8E-20 155.9 19.9 193 82-304 12-224 (725)
87 TIGR02928 orc1/cdc6 family rep 99.7 4.6E-15 1E-19 144.6 22.5 221 88-340 15-275 (365)
88 PRK14965 DNA polymerase III su 99.7 8.1E-16 1.8E-20 157.0 17.7 187 82-304 10-225 (576)
89 TIGR03346 chaperone_ClpB ATP-d 99.7 6.7E-16 1.4E-20 164.7 17.8 186 84-293 169-377 (852)
90 CHL00095 clpC Clp protease ATP 99.7 2.5E-16 5.4E-21 167.5 14.5 185 85-293 176-382 (821)
91 PRK12402 replication factor C 99.7 2.2E-15 4.7E-20 145.2 19.6 210 81-338 8-248 (337)
92 TIGR00362 DnaA chromosomal rep 99.7 1E-15 2.2E-20 151.0 17.5 171 123-306 136-317 (405)
93 PRK05896 DNA polymerase III su 99.7 1.7E-15 3.6E-20 152.3 17.9 185 82-302 10-223 (605)
94 KOG0989 Replication factor C, 99.7 5E-16 1.1E-20 140.7 12.6 177 81-290 29-222 (346)
95 PRK07764 DNA polymerase III su 99.7 2.4E-15 5.1E-20 157.8 19.6 191 82-304 9-226 (824)
96 TIGR00390 hslU ATP-dependent p 99.7 2.2E-15 4.8E-20 144.4 17.7 178 89-266 13-342 (441)
97 PRK10787 DNA-binding ATP-depen 99.7 1.9E-15 4.1E-20 158.6 18.8 229 89-340 323-583 (784)
98 TIGR02397 dnaX_nterm DNA polym 99.7 1.8E-15 4E-20 146.8 17.2 188 81-304 7-223 (355)
99 PRK08451 DNA polymerase III su 99.7 3.5E-15 7.6E-20 149.0 19.2 190 82-307 8-226 (535)
100 PRK14953 DNA polymerase III su 99.7 3.4E-15 7.4E-20 149.0 19.1 193 82-304 10-225 (486)
101 COG2812 DnaX DNA polymerase II 99.7 2E-15 4.3E-20 149.0 16.6 195 83-307 11-228 (515)
102 PRK06647 DNA polymerase III su 99.7 3.1E-15 6.8E-20 151.6 18.3 187 82-304 10-225 (563)
103 PHA02544 44 clamp loader, smal 99.7 2.2E-15 4.8E-20 143.9 16.4 159 81-270 14-173 (316)
104 PRK13341 recombination factor 99.7 2.8E-15 6E-20 155.5 18.0 181 84-304 24-222 (725)
105 PF05673 DUF815: Protein of un 99.7 4.1E-15 8.9E-20 132.6 16.5 190 83-301 22-243 (249)
106 PRK09111 DNA polymerase III su 99.7 5.4E-15 1.2E-19 150.5 19.4 193 82-304 18-238 (598)
107 PRK05342 clpX ATP-dependent pr 99.7 6.5E-15 1.4E-19 143.8 18.6 249 80-333 62-399 (412)
108 PRK14088 dnaA chromosomal repl 99.6 4.4E-15 9.6E-20 147.1 17.3 169 123-303 130-309 (440)
109 PRK08084 DNA replication initi 99.6 8.3E-15 1.8E-19 133.6 17.8 206 83-337 17-234 (235)
110 PRK08903 DnaA regulatory inact 99.6 2.2E-14 4.8E-19 130.4 20.5 201 83-337 13-224 (227)
111 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.5E-14 3.3E-19 131.2 19.5 204 84-336 11-225 (226)
112 PRK06893 DNA replication initi 99.6 4.9E-15 1.1E-19 134.7 15.7 210 82-337 10-228 (229)
113 PRK00411 cdc6 cell division co 99.6 2.3E-14 5E-19 141.1 21.5 224 86-341 28-284 (394)
114 PRK14970 DNA polymerase III su 99.6 1.1E-14 2.3E-19 142.0 18.5 188 82-303 11-213 (367)
115 PRK14955 DNA polymerase III su 99.6 1.1E-14 2.3E-19 143.0 18.0 186 82-303 10-232 (397)
116 PRK06305 DNA polymerase III su 99.6 1.7E-14 3.6E-19 143.2 18.7 188 83-302 12-225 (451)
117 COG3829 RocR Transcriptional r 99.6 1.1E-15 2.3E-20 148.8 9.6 231 84-337 241-496 (560)
118 PRK05201 hslU ATP-dependent pr 99.6 3.6E-15 7.7E-20 143.0 12.6 179 89-267 16-345 (443)
119 PRK14954 DNA polymerase III su 99.6 2.8E-14 6E-19 145.6 19.8 189 83-302 11-231 (620)
120 PTZ00112 origin recognition co 99.6 5E-14 1.1E-18 144.0 20.5 217 88-341 755-1008(1164)
121 PRK00440 rfc replication facto 99.6 3.5E-14 7.6E-19 135.7 18.6 174 81-290 10-195 (319)
122 PRK08727 hypothetical protein; 99.6 8.6E-14 1.9E-18 126.8 19.5 179 124-338 42-230 (233)
123 PRK14948 DNA polymerase III su 99.6 3.1E-14 6.6E-19 145.9 17.9 184 82-301 10-224 (620)
124 PRK14086 dnaA chromosomal repl 99.6 3.5E-14 7.7E-19 142.8 17.8 166 124-303 315-492 (617)
125 TIGR02903 spore_lon_C ATP-depe 99.6 5.4E-14 1.2E-18 144.6 18.5 227 82-340 148-431 (615)
126 PRK14950 DNA polymerase III su 99.6 7.7E-14 1.7E-18 143.2 19.0 185 82-302 10-224 (585)
127 COG2204 AtoC Response regulato 99.6 1.6E-15 3.4E-20 147.7 5.4 223 85-334 138-386 (464)
128 TIGR00382 clpX endopeptidase C 99.6 1E-13 2.2E-18 134.8 17.8 227 85-311 73-388 (413)
129 PRK12422 chromosomal replicati 99.6 3.8E-14 8.1E-19 140.2 15.0 167 123-302 141-316 (445)
130 PRK05642 DNA replication initi 99.6 1.2E-13 2.6E-18 125.9 17.1 180 123-337 45-233 (234)
131 PRK06620 hypothetical protein; 99.6 2.5E-13 5.5E-18 121.8 18.9 195 82-336 10-213 (214)
132 PRK11034 clpA ATP-dependent Cl 99.6 7E-14 1.5E-18 145.8 17.4 207 89-311 459-719 (758)
133 PRK14087 dnaA chromosomal repl 99.5 3E-13 6.4E-18 134.3 19.1 171 123-308 141-328 (450)
134 PF00308 Bac_DnaA: Bacterial d 99.5 8.8E-14 1.9E-18 125.4 13.4 195 83-302 3-211 (219)
135 PRK14971 DNA polymerase III su 99.5 2.4E-13 5.3E-18 139.3 18.2 185 83-303 12-226 (614)
136 TIGR02640 gas_vesic_GvpN gas v 99.5 1.1E-13 2.4E-18 128.3 12.7 135 123-270 21-198 (262)
137 PF01078 Mg_chelatase: Magnesi 99.5 7.1E-15 1.5E-19 128.6 4.0 145 86-260 1-205 (206)
138 PRK13407 bchI magnesium chelat 99.5 1.8E-13 4E-18 129.9 13.9 163 84-271 4-217 (334)
139 COG1224 TIP49 DNA helicase TIP 99.5 1E-12 2.2E-17 121.4 18.1 128 183-339 292-432 (450)
140 PRK09112 DNA polymerase III su 99.5 1.2E-12 2.6E-17 125.6 19.5 193 82-305 17-246 (351)
141 COG2607 Predicted ATPase (AAA+ 99.5 9.7E-13 2.1E-17 115.5 16.8 167 81-276 53-245 (287)
142 CHL00081 chlI Mg-protoporyphyr 99.5 5.2E-13 1.1E-17 127.1 16.0 163 82-270 11-232 (350)
143 PRK09087 hypothetical protein; 99.5 1.5E-12 3.2E-17 117.9 16.9 172 124-339 45-222 (226)
144 PHA02244 ATPase-like protein 99.5 4E-13 8.8E-18 127.2 13.4 133 123-262 119-266 (383)
145 cd00009 AAA The AAA+ (ATPases 99.5 1.3E-12 2.8E-17 109.2 14.8 139 92-255 2-150 (151)
146 TIGR02639 ClpA ATP-dependent C 99.5 2.1E-12 4.6E-17 136.1 19.4 205 88-311 454-715 (731)
147 COG1474 CDC6 Cdc6-related prot 99.5 8.4E-12 1.8E-16 120.3 21.9 218 90-341 19-267 (366)
148 COG3604 FhlA Transcriptional r 99.5 1.2E-13 2.6E-18 133.0 8.6 164 84-264 219-401 (550)
149 PRK07471 DNA polymerase III su 99.5 3.2E-12 6.9E-17 123.4 18.6 186 82-300 13-239 (365)
150 PRK05564 DNA polymerase III su 99.5 2.9E-12 6.2E-17 122.2 18.1 171 86-292 2-184 (313)
151 TIGR02974 phageshock_pspF psp 99.5 3.4E-13 7.3E-18 128.8 11.5 194 90-317 1-228 (329)
152 KOG0991 Replication factor C, 99.4 9.8E-13 2.1E-17 114.9 12.0 177 81-290 20-206 (333)
153 COG0593 DnaA ATPase involved i 99.4 3.2E-12 7E-17 123.0 16.4 172 122-307 112-294 (408)
154 PRK11608 pspF phage shock prot 99.4 6.1E-13 1.3E-17 127.1 11.2 198 86-317 4-235 (326)
155 TIGR01817 nifA Nif-specific re 99.4 5.7E-13 1.2E-17 136.0 10.8 212 84-333 192-439 (534)
156 TIGR01650 PD_CobS cobaltochela 99.4 3.8E-13 8.3E-18 126.0 8.6 141 123-272 64-235 (327)
157 PRK07399 DNA polymerase III su 99.4 3.8E-12 8.3E-17 120.5 15.0 183 86-301 2-223 (314)
158 TIGR02329 propionate_PrpR prop 99.4 5.8E-13 1.3E-17 134.1 9.2 214 85-335 209-466 (526)
159 TIGR02030 BchI-ChlI magnesium 99.4 4.2E-12 9.1E-17 120.9 14.3 160 86-270 2-219 (337)
160 PRK11388 DNA-binding transcrip 99.4 1.3E-12 2.9E-17 136.1 12.0 220 84-337 321-569 (638)
161 PRK15424 propionate catabolism 99.4 6.8E-13 1.5E-17 133.5 8.9 155 85-266 216-408 (538)
162 PRK10820 DNA-binding transcrip 99.4 1.8E-12 4E-17 131.4 12.0 216 83-332 199-447 (520)
163 TIGR02442 Cob-chelat-sub cobal 99.4 3E-12 6.4E-17 132.6 13.5 160 86-270 2-214 (633)
164 TIGR03345 VI_ClpV1 type VI sec 99.4 1.4E-11 3.1E-16 131.0 18.7 204 88-311 566-834 (852)
165 PRK10865 protein disaggregatio 99.4 3.4E-11 7.4E-16 128.4 20.3 206 87-311 567-832 (857)
166 PRK15429 formate hydrogenlyase 99.4 1.3E-11 2.9E-16 129.5 16.9 200 84-317 372-604 (686)
167 TIGR00368 Mg chelatase-related 99.4 1.5E-11 3.2E-16 123.1 16.2 147 84-260 188-394 (499)
168 TIGR03346 chaperone_ClpB ATP-d 99.4 4.8E-11 1E-15 127.7 21.0 208 88-312 565-830 (852)
169 COG0714 MoxR-like ATPases [Gen 99.4 2.7E-12 5.8E-17 123.2 9.8 154 90-270 26-203 (329)
170 PRK05022 anaerobic nitric oxid 99.4 4.6E-12 1E-16 128.4 12.0 198 86-317 185-415 (509)
171 PRK05707 DNA polymerase III su 99.4 2.7E-11 5.9E-16 115.4 16.5 148 123-292 22-197 (328)
172 COG0542 clpA ATP-binding subun 99.3 1.4E-11 3E-16 126.6 14.2 169 84-276 166-352 (786)
173 COG1221 PspF Transcriptional r 99.3 2.7E-12 5.9E-17 123.1 8.2 199 82-308 72-310 (403)
174 PRK08058 DNA polymerase III su 99.3 5E-11 1.1E-15 114.1 16.8 149 86-268 3-180 (329)
175 CHL00095 clpC Clp protease ATP 99.3 4.2E-11 9.1E-16 127.8 17.7 208 88-311 509-785 (821)
176 COG0542 clpA ATP-binding subun 99.3 3.6E-11 7.8E-16 123.6 16.4 205 88-310 491-757 (786)
177 TIGR00678 holB DNA polymerase 99.3 2E-11 4.3E-16 107.6 12.8 142 123-290 14-183 (188)
178 PF06068 TIP49: TIP49 C-termin 99.3 1.9E-11 4.1E-16 114.9 12.5 68 85-161 21-90 (398)
179 PRK11331 5-methylcytosine-spec 99.3 3.6E-11 7.7E-16 117.0 14.9 143 87-256 174-357 (459)
180 COG0470 HolB ATPase involved i 99.3 2.2E-11 4.8E-16 116.6 13.3 149 89-267 2-178 (325)
181 COG0606 Predicted ATPase with 99.3 7.4E-13 1.6E-17 127.5 2.5 46 84-145 175-220 (490)
182 KOG1969 DNA replication checkp 99.3 3.6E-11 7.8E-16 120.3 14.1 215 80-309 263-517 (877)
183 TIGR03015 pepcterm_ATPase puta 99.3 4.8E-10 1E-14 104.5 20.8 192 124-340 44-267 (269)
184 smart00350 MCM minichromosome 99.3 2.4E-11 5.3E-16 122.9 12.8 167 89-271 204-401 (509)
185 PF05621 TniB: Bacterial TniB 99.3 2E-10 4.4E-15 105.9 17.2 216 89-334 35-284 (302)
186 PF07728 AAA_5: AAA domain (dy 99.3 1.7E-12 3.7E-17 108.6 2.8 112 125-248 1-139 (139)
187 smart00382 AAA ATPases associa 99.3 2.7E-11 5.9E-16 100.3 10.0 128 123-257 2-147 (148)
188 PF00158 Sigma54_activat: Sigm 99.3 3.7E-11 7.9E-16 103.5 10.7 133 90-248 1-162 (168)
189 PRK04132 replication factor C 99.3 7.1E-11 1.5E-15 123.7 14.3 144 125-290 566-723 (846)
190 TIGR00764 lon_rel lon-related 99.2 5.5E-11 1.2E-15 122.1 13.0 54 81-150 11-64 (608)
191 PF07724 AAA_2: AAA domain (Cd 99.2 4.8E-11 1E-15 103.1 10.5 115 122-238 2-131 (171)
192 COG1220 HslU ATP-dependent pro 99.2 7.2E-11 1.6E-15 108.6 12.1 86 182-267 250-346 (444)
193 PRK06871 DNA polymerase III su 99.2 8.5E-10 1.8E-14 104.5 18.5 146 123-292 24-197 (325)
194 TIGR02915 PEP_resp_reg putativ 99.2 2.4E-11 5.1E-16 121.6 7.9 210 86-332 137-382 (445)
195 COG1219 ClpX ATP-dependent pro 99.2 1E-10 2.2E-15 106.8 10.9 130 90-221 63-204 (408)
196 PRK10923 glnG nitrogen regulat 99.2 4.9E-11 1.1E-15 120.2 9.2 214 86-336 136-385 (469)
197 KOG0741 AAA+-type ATPase [Post 99.2 7.2E-10 1.6E-14 107.4 16.5 245 3-268 433-684 (744)
198 PF07726 AAA_3: ATPase family 99.2 2.7E-12 5.9E-17 103.3 -0.5 115 125-248 1-129 (131)
199 KOG1942 DNA helicase, TBP-inte 99.2 1.1E-09 2.3E-14 99.1 15.3 94 182-292 296-403 (456)
200 PRK13531 regulatory ATPase Rav 99.2 8.2E-11 1.8E-15 115.4 8.8 153 89-269 21-193 (498)
201 PF13177 DNA_pol3_delta2: DNA 99.1 5.5E-10 1.2E-14 95.9 12.2 134 92-257 1-161 (162)
202 PRK09862 putative ATP-dependen 99.1 3E-10 6.5E-15 113.3 12.0 146 85-260 188-391 (506)
203 PRK06964 DNA polymerase III su 99.1 4.3E-10 9.4E-15 107.2 12.5 132 122-269 20-203 (342)
204 PRK07993 DNA polymerase III su 99.1 1.7E-09 3.8E-14 103.3 16.2 152 122-293 23-199 (334)
205 TIGR00602 rad24 checkpoint pro 99.1 1.4E-09 3.1E-14 111.2 16.4 201 81-308 77-329 (637)
206 PRK06090 DNA polymerase III su 99.1 4.5E-09 9.7E-14 99.3 18.2 128 122-268 24-178 (319)
207 TIGR02031 BchD-ChlD magnesium 99.1 1.2E-09 2.5E-14 112.2 15.3 137 124-271 17-175 (589)
208 PRK11361 acetoacetate metaboli 99.1 2.9E-10 6.3E-15 114.2 10.7 214 86-336 141-390 (457)
209 COG1239 ChlI Mg-chelatase subu 99.1 5.3E-10 1.1E-14 106.6 11.6 171 84-272 13-234 (423)
210 smart00763 AAA_PrkA PrkA AAA d 99.1 7.5E-10 1.6E-14 105.1 12.4 63 86-156 48-118 (361)
211 PRK08769 DNA polymerase III su 99.1 2.2E-09 4.8E-14 101.5 15.5 153 123-296 26-206 (319)
212 KOG2680 DNA helicase TIP49, TB 99.1 4.9E-09 1.1E-13 95.2 15.8 132 182-342 288-432 (454)
213 PTZ00111 DNA replication licen 99.1 1.6E-09 3.4E-14 113.3 14.5 171 89-271 451-658 (915)
214 KOG2227 Pre-initiation complex 99.1 1E-08 2.2E-13 98.6 18.7 232 88-342 150-418 (529)
215 COG3283 TyrR Transcriptional r 99.1 4.9E-10 1.1E-14 103.9 9.4 155 83-264 199-377 (511)
216 TIGR01818 ntrC nitrogen regula 99.1 4E-10 8.7E-15 113.4 9.4 214 87-337 133-382 (463)
217 PRK15115 response regulator Gl 99.1 7.4E-10 1.6E-14 110.8 11.3 189 123-336 157-381 (444)
218 KOG2035 Replication factor C, 99.1 5.1E-09 1.1E-13 94.2 14.6 173 83-290 8-220 (351)
219 PRK08116 hypothetical protein; 99.0 1.2E-09 2.5E-14 101.5 10.8 160 77-259 74-251 (268)
220 PRK12377 putative replication 99.0 1E-09 2.2E-14 100.3 10.0 103 78-194 64-175 (248)
221 PRK13765 ATP-dependent proteas 99.0 1.7E-09 3.8E-14 110.9 11.0 52 81-148 24-75 (637)
222 PRK10365 transcriptional regul 99.0 1.5E-09 3.2E-14 108.5 10.4 188 123-335 162-385 (441)
223 KOG0478 DNA replication licens 99.0 3.4E-09 7.4E-14 105.6 12.3 177 89-270 430-626 (804)
224 KOG1514 Origin recognition com 99.0 1.2E-08 2.5E-13 102.4 15.5 202 124-342 423-658 (767)
225 PF14532 Sigma54_activ_2: Sigm 99.0 3.1E-09 6.8E-14 88.7 8.8 127 91-258 1-137 (138)
226 PRK08699 DNA polymerase III su 98.9 9.9E-09 2.2E-13 97.7 12.3 131 122-268 20-183 (325)
227 COG1241 MCM2 Predicted ATPase 98.9 2E-09 4.4E-14 109.8 7.6 172 88-271 286-484 (682)
228 PF03215 Rad17: Rad17 cell cyc 98.9 2.9E-08 6.4E-13 99.8 15.0 203 81-308 12-269 (519)
229 PRK07952 DNA replication prote 98.9 7.6E-09 1.7E-13 94.3 9.4 69 124-194 100-174 (244)
230 PRK08181 transposase; Validate 98.9 2.5E-08 5.5E-13 92.2 12.5 71 123-195 106-180 (269)
231 KOG0745 Putative ATP-dependent 98.9 7.1E-09 1.5E-13 98.5 8.8 98 123-220 226-332 (564)
232 KOG0990 Replication factor C, 98.9 8.4E-09 1.8E-13 94.7 8.4 163 81-276 34-209 (360)
233 PF13173 AAA_14: AAA domain 98.8 1.3E-08 2.9E-13 83.7 8.4 118 124-261 3-126 (128)
234 PRK13406 bchD magnesium chelat 98.8 1.7E-08 3.6E-13 103.0 8.3 125 124-262 26-174 (584)
235 KOG0480 DNA replication licens 98.7 1E-07 2.3E-12 94.5 12.0 201 87-304 344-571 (764)
236 PF01637 Arch_ATPase: Archaeal 98.7 4.8E-08 1E-12 88.4 9.1 178 91-292 2-228 (234)
237 PRK06526 transposase; Provisio 98.7 5.8E-08 1.3E-12 89.3 9.1 73 121-195 96-172 (254)
238 PRK06835 DNA replication prote 98.7 4.7E-08 1E-12 93.1 8.4 112 123-248 183-305 (329)
239 PF13401 AAA_22: AAA domain; P 98.7 8.8E-08 1.9E-12 78.8 8.1 73 123-195 4-100 (131)
240 PRK08939 primosomal protein Dn 98.6 2.6E-07 5.7E-12 87.3 11.5 70 123-194 156-229 (306)
241 PRK09183 transposase/IS protei 98.6 3E-07 6.6E-12 85.0 11.5 72 122-194 101-176 (259)
242 PF12774 AAA_6: Hydrolytic ATP 98.6 6.4E-07 1.4E-11 81.1 13.2 133 123-267 32-177 (231)
243 PRK05917 DNA polymerase III su 98.6 2.6E-07 5.6E-12 85.9 10.8 119 123-257 19-154 (290)
244 PF12775 AAA_7: P-loop contain 98.6 3.3E-08 7E-13 92.0 4.7 140 123-272 33-195 (272)
245 PRK07276 DNA polymerase III su 98.6 2.9E-06 6.2E-11 79.2 17.5 155 122-302 23-200 (290)
246 KOG0482 DNA replication licens 98.6 2.2E-07 4.8E-12 89.9 10.3 212 89-309 343-591 (721)
247 KOG0477 DNA replication licens 98.6 1.7E-07 3.6E-12 92.8 9.3 173 89-273 450-653 (854)
248 KOG1970 Checkpoint RAD17-RFC c 98.6 1.9E-06 4.1E-11 84.7 16.4 207 82-307 76-320 (634)
249 PRK06921 hypothetical protein; 98.6 1.9E-07 4.1E-12 86.6 9.2 68 123-193 117-188 (266)
250 COG1484 DnaC DNA replication p 98.6 1.7E-07 3.6E-12 86.3 8.5 70 123-194 105-179 (254)
251 PRK05818 DNA polymerase III su 98.6 1.4E-06 3.1E-11 79.3 14.3 121 121-257 5-147 (261)
252 PF03969 AFG1_ATPase: AFG1-lik 98.6 6.2E-07 1.3E-11 86.5 11.7 102 120-236 59-167 (362)
253 COG3284 AcoR Transcriptional a 98.5 9E-08 2E-12 95.6 5.1 140 123-271 336-500 (606)
254 PF05729 NACHT: NACHT domain 98.5 1.2E-06 2.6E-11 74.8 11.6 140 125-272 2-165 (166)
255 KOG2228 Origin recognition com 98.5 7.3E-07 1.6E-11 82.6 10.3 161 90-271 26-220 (408)
256 KOG1051 Chaperone HSP104 and r 98.5 1.4E-06 3.1E-11 91.3 12.8 127 89-236 563-710 (898)
257 KOG0481 DNA replication licens 98.4 5E-06 1.1E-10 80.9 14.5 170 89-270 332-528 (729)
258 PRK07132 DNA polymerase III su 98.4 4.6E-06 1E-10 78.4 13.8 126 123-269 18-161 (299)
259 PF00493 MCM: MCM2/3/5 family 98.4 1.1E-07 2.3E-12 91.2 2.8 163 89-273 25-224 (331)
260 cd01120 RecA-like_NTPases RecA 98.4 2.2E-06 4.8E-11 72.9 10.0 72 126-197 2-100 (165)
261 COG4650 RtcR Sigma54-dependent 98.4 5E-07 1.1E-11 82.2 5.8 131 123-265 208-367 (531)
262 PLN03210 Resistant to P. syrin 98.4 6.2E-06 1.3E-10 91.9 15.6 176 83-293 179-390 (1153)
263 PF01695 IstB_IS21: IstB-like 98.3 4E-07 8.7E-12 79.3 4.0 72 121-194 45-120 (178)
264 CHL00195 ycf46 Ycf46; Provisio 98.3 6.1E-05 1.3E-09 75.6 19.7 164 183-379 82-246 (489)
265 COG3267 ExeA Type II secretory 98.3 2.5E-05 5.5E-10 70.1 14.6 173 125-310 53-256 (269)
266 KOG2383 Predicted ATPase [Gene 98.3 1E-05 2.2E-10 76.8 12.3 162 120-305 111-298 (467)
267 PF00931 NB-ARC: NB-ARC domain 98.3 4.3E-06 9.3E-11 78.5 10.1 157 122-299 18-202 (287)
268 TIGR02237 recomb_radB DNA repa 98.3 7E-06 1.5E-10 73.5 10.8 78 119-196 8-111 (209)
269 COG5271 MDN1 AAA ATPase contai 98.2 1.8E-06 3.8E-11 93.5 6.3 146 123-271 1543-1704(4600)
270 PHA00729 NTP-binding motif con 98.2 6E-06 1.3E-10 73.9 8.7 25 124-148 18-42 (226)
271 PF00910 RNA_helicase: RNA hel 98.2 6.3E-06 1.4E-10 65.5 7.3 23 126-148 1-23 (107)
272 COG1618 Predicted nucleotide k 98.2 4.6E-05 1E-09 63.7 12.5 25 123-147 5-29 (179)
273 KOG1968 Replication factor C, 98.1 4.1E-06 9E-11 88.5 6.7 207 82-306 314-535 (871)
274 KOG1051 Chaperone HSP104 and r 98.1 4.5E-05 9.8E-10 80.3 13.2 139 124-272 209-365 (898)
275 TIGR01618 phage_P_loop phage n 98.1 9.1E-06 2E-10 72.8 6.9 22 123-144 12-33 (220)
276 PF13207 AAA_17: AAA domain; P 98.1 3.8E-06 8.2E-11 68.1 3.9 31 126-156 2-32 (121)
277 cd01124 KaiC KaiC is a circadi 98.0 6.1E-05 1.3E-09 65.9 11.5 71 126-196 2-109 (187)
278 TIGR02688 conserved hypothetic 98.0 4.5E-05 9.8E-10 74.0 11.2 65 120-196 206-274 (449)
279 PF14516 AAA_35: AAA-like doma 98.0 0.00012 2.6E-09 70.3 14.2 171 122-305 30-245 (331)
280 COG1485 Predicted ATPase [Gene 98.0 1.9E-05 4.2E-10 74.1 8.1 104 120-239 62-174 (367)
281 PHA02624 large T antigen; Prov 98.0 6.1E-05 1.3E-09 76.0 11.5 122 120-256 428-561 (647)
282 PRK08118 topology modulation p 98.0 1.6E-05 3.5E-10 68.6 6.2 32 125-156 3-34 (167)
283 KOG0479 DNA replication licens 98.0 1.2E-05 2.5E-10 79.5 5.9 173 89-270 302-498 (818)
284 TIGR02012 tigrfam_recA protein 98.0 7.2E-05 1.6E-09 70.8 11.0 79 119-197 51-148 (321)
285 PRK11823 DNA repair protein Ra 97.9 7.6E-05 1.6E-09 74.5 11.4 79 119-197 76-171 (446)
286 KOG2170 ATPase of the AAA+ sup 97.9 0.0001 2.2E-09 67.7 10.9 96 89-194 83-190 (344)
287 PF13191 AAA_16: AAA ATPase do 97.9 4.2E-05 9.1E-10 66.6 8.1 59 90-159 2-63 (185)
288 cd01121 Sms Sms (bacterial rad 97.9 7.5E-05 1.6E-09 72.5 10.3 79 119-197 78-173 (372)
289 PRK07261 topology modulation p 97.9 2.8E-05 6E-10 67.3 6.7 33 125-157 2-34 (171)
290 cd00983 recA RecA is a bacter 97.9 0.0001 2.3E-09 69.8 11.0 79 119-197 51-148 (325)
291 PRK00131 aroK shikimate kinase 97.9 1.6E-05 3.5E-10 68.7 4.7 34 122-155 3-36 (175)
292 PRK09361 radB DNA repair and r 97.8 0.00019 4.1E-09 65.0 11.1 38 120-157 20-60 (225)
293 PF05707 Zot: Zonular occluden 97.8 3.7E-05 8E-10 68.0 6.2 121 126-255 3-144 (193)
294 PRK15455 PrkA family serine pr 97.8 3.1E-05 6.6E-10 77.8 6.0 62 85-154 73-135 (644)
295 PRK08533 flagellar accessory p 97.8 0.00045 9.8E-09 62.8 12.8 76 120-195 21-130 (230)
296 PF13671 AAA_33: AAA domain; P 97.8 6.4E-05 1.4E-09 62.7 6.7 32 126-159 2-33 (143)
297 PRK00771 signal recognition pa 97.7 0.0021 4.6E-08 63.7 17.7 198 122-343 94-336 (437)
298 PHA02774 E1; Provisional 97.7 0.00018 4E-09 72.4 10.2 109 123-257 434-555 (613)
299 KOG3347 Predicted nucleotide k 97.7 2.8E-05 6.1E-10 63.9 3.6 33 123-155 7-39 (176)
300 PTZ00202 tuzin; Provisional 97.7 0.0057 1.2E-07 59.9 19.5 63 84-157 258-320 (550)
301 COG4619 ABC-type uncharacteriz 97.7 0.00017 3.8E-09 60.8 8.1 25 121-145 27-51 (223)
302 PRK04841 transcriptional regul 97.7 0.00058 1.3E-08 74.6 14.7 155 123-294 32-221 (903)
303 PRK03839 putative kinase; Prov 97.7 3.3E-05 7.1E-10 67.4 4.0 31 125-155 2-32 (180)
304 PF03266 NTPase_1: NTPase; In 97.7 8E-05 1.7E-09 64.2 6.2 23 125-147 1-23 (168)
305 PRK00625 shikimate kinase; Pro 97.7 3.7E-05 8.1E-10 66.6 4.2 31 125-155 2-32 (173)
306 PRK04296 thymidine kinase; Pro 97.7 0.00042 9E-09 61.1 10.9 31 125-155 4-37 (190)
307 PRK13947 shikimate kinase; Pro 97.7 3.9E-05 8.4E-10 66.3 4.2 31 125-155 3-33 (171)
308 PRK06067 flagellar accessory p 97.7 0.00056 1.2E-08 62.3 12.0 77 119-195 21-133 (234)
309 cd01131 PilT Pilus retraction 97.7 8.8E-05 1.9E-09 65.8 6.2 67 125-191 3-83 (198)
310 COG3854 SpoIIIAA ncharacterize 97.7 0.00016 3.5E-09 64.0 7.5 72 123-194 137-230 (308)
311 PRK06762 hypothetical protein; 97.7 0.00013 2.8E-09 62.6 7.0 37 124-160 3-39 (166)
312 PRK06581 DNA polymerase III su 97.7 0.00067 1.5E-08 61.0 11.4 145 123-287 15-176 (263)
313 cd00464 SK Shikimate kinase (S 97.6 4.9E-05 1.1E-09 64.2 4.1 31 125-155 1-31 (154)
314 PRK13949 shikimate kinase; Pro 97.6 4.8E-05 1E-09 65.7 4.0 32 124-155 2-33 (169)
315 COG1373 Predicted ATPase (AAA+ 97.6 0.00062 1.3E-08 67.0 12.3 121 125-264 39-161 (398)
316 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.00087 1.9E-08 61.2 12.5 38 119-156 17-57 (237)
317 cd01129 PulE-GspE PulE/GspE Th 97.6 0.00021 4.5E-09 66.3 8.5 104 75-193 47-160 (264)
318 KOG2543 Origin recognition com 97.6 0.00083 1.8E-08 63.8 12.3 61 88-159 6-66 (438)
319 PRK14532 adenylate kinase; Pro 97.6 5.1E-05 1.1E-09 66.7 4.2 36 125-162 2-37 (188)
320 PF10443 RNA12: RNA12 protein; 97.6 0.0039 8.4E-08 60.7 17.2 35 239-273 198-232 (431)
321 PRK13948 shikimate kinase; Pro 97.6 7.1E-05 1.5E-09 65.3 4.8 35 121-155 8-42 (182)
322 PF06745 KaiC: KaiC; InterPro 97.6 0.00061 1.3E-08 61.7 11.1 76 119-194 15-127 (226)
323 COG4088 Predicted nucleotide k 97.6 0.00033 7.2E-09 61.0 8.6 22 126-147 4-25 (261)
324 PRK05800 cobU adenosylcobinami 97.6 0.00055 1.2E-08 59.1 10.2 34 125-158 3-36 (170)
325 TIGR01359 UMP_CMP_kin_fam UMP- 97.6 5.9E-05 1.3E-09 65.9 4.1 34 126-161 2-35 (183)
326 PF06309 Torsin: Torsin; Inte 97.6 0.00016 3.5E-09 58.4 6.2 52 89-147 26-77 (127)
327 PRK10536 hypothetical protein; 97.6 0.00054 1.2E-08 62.5 10.3 23 124-146 75-97 (262)
328 cd01394 radB RadB. The archaea 97.6 0.00061 1.3E-08 61.3 10.7 38 120-157 16-56 (218)
329 PRK09354 recA recombinase A; P 97.6 0.00066 1.4E-08 65.0 11.3 78 119-196 56-152 (349)
330 PRK05973 replicative DNA helic 97.6 0.00097 2.1E-08 60.5 11.8 38 119-156 60-100 (237)
331 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00052 1.1E-08 62.4 10.1 40 119-158 15-63 (235)
332 PRK14531 adenylate kinase; Pro 97.6 7.7E-05 1.7E-09 65.3 4.4 31 124-154 3-33 (183)
333 PRK06217 hypothetical protein; 97.6 7.5E-05 1.6E-09 65.4 4.2 31 125-155 3-33 (183)
334 COG0703 AroK Shikimate kinase 97.5 7.2E-05 1.6E-09 63.9 3.6 32 124-155 3-34 (172)
335 cd00227 CPT Chloramphenicol (C 97.5 7.8E-05 1.7E-09 64.8 3.7 35 124-158 3-37 (175)
336 cd00046 DEXDc DEAD-like helica 97.5 0.00038 8.2E-09 56.9 7.7 24 124-147 1-24 (144)
337 COG5271 MDN1 AAA ATPase contai 97.5 7.2E-05 1.6E-09 81.7 4.0 136 123-271 888-1048(4600)
338 TIGR02525 plasmid_TraJ plasmid 97.5 0.00024 5.3E-09 68.9 7.3 70 124-193 150-236 (372)
339 cd00544 CobU Adenosylcobinamid 97.5 0.0011 2.4E-08 57.2 10.6 71 126-198 2-89 (169)
340 PRK09376 rho transcription ter 97.5 0.0003 6.5E-09 67.9 7.8 26 123-148 169-194 (416)
341 cd02021 GntK Gluconate kinase 97.5 9.5E-05 2.1E-09 62.4 4.0 28 126-153 2-29 (150)
342 COG1102 Cmk Cytidylate kinase 97.5 9.2E-05 2E-09 61.9 3.7 29 126-154 3-31 (179)
343 PRK14530 adenylate kinase; Pro 97.5 0.00011 2.3E-09 66.2 4.5 31 124-154 4-34 (215)
344 PRK08154 anaerobic benzoate ca 97.5 0.0002 4.3E-09 68.2 6.4 42 114-155 124-165 (309)
345 PTZ00088 adenylate kinase 1; P 97.5 0.00012 2.7E-09 66.3 4.6 33 123-155 6-38 (229)
346 cd02020 CMPK Cytidine monophos 97.5 0.0001 2.2E-09 61.6 3.9 30 126-155 2-31 (147)
347 cd01428 ADK Adenylate kinase ( 97.5 0.0001 2.2E-09 64.9 4.1 29 126-154 2-30 (194)
348 cd01393 recA_like RecA is a b 97.5 0.001 2.2E-08 60.2 10.7 39 120-158 16-63 (226)
349 PRK14974 cell division protein 97.5 0.0016 3.5E-08 62.3 12.4 35 123-157 140-177 (336)
350 PRK14722 flhF flagellar biosyn 97.5 0.00051 1.1E-08 66.5 9.0 25 122-146 136-160 (374)
351 PRK12723 flagellar biosynthesi 97.5 0.0016 3.5E-08 63.5 12.3 25 123-147 174-198 (388)
352 TIGR01420 pilT_fam pilus retra 97.5 0.00023 4.9E-09 68.8 6.4 70 123-192 122-205 (343)
353 cd01128 rho_factor Transcripti 97.5 0.00049 1.1E-08 63.1 8.2 28 122-149 15-42 (249)
354 TIGR00416 sms DNA repair prote 97.5 0.00081 1.8E-08 67.2 10.4 79 119-197 90-185 (454)
355 TIGR01313 therm_gnt_kin carboh 97.5 0.00011 2.4E-09 62.9 3.7 28 126-153 1-28 (163)
356 PF05272 VirE: Virulence-assoc 97.5 0.0001 2.2E-09 65.2 3.5 110 123-256 52-169 (198)
357 PRK06547 hypothetical protein; 97.5 0.00014 3.1E-09 62.9 4.4 33 123-155 15-47 (172)
358 PRK13695 putative NTPase; Prov 97.4 0.0023 5.1E-08 55.4 12.0 23 125-147 2-24 (174)
359 PF08433 KTI12: Chromatin asso 97.4 0.001 2.3E-08 61.7 10.3 68 126-194 4-82 (270)
360 PF08303 tRNA_lig_kinase: tRNA 97.4 0.0061 1.3E-07 51.5 13.8 130 129-274 5-147 (168)
361 cd00984 DnaB_C DnaB helicase C 97.4 0.0027 5.8E-08 58.0 12.9 37 120-156 10-50 (242)
362 cd03283 ABC_MutS-like MutS-lik 97.4 0.0013 2.8E-08 58.4 10.2 22 124-145 26-47 (199)
363 PF13604 AAA_30: AAA domain; P 97.4 0.0017 3.7E-08 57.5 11.0 34 124-157 19-55 (196)
364 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0022 4.8E-08 59.4 12.2 38 119-156 32-72 (259)
365 PF07693 KAP_NTPase: KAP famil 97.4 0.0054 1.2E-07 58.6 15.4 29 121-149 18-46 (325)
366 PRK05057 aroK shikimate kinase 97.4 0.00017 3.7E-09 62.5 4.4 34 123-156 4-37 (172)
367 TIGR02533 type_II_gspE general 97.4 0.00065 1.4E-08 68.5 9.1 101 77-193 211-322 (486)
368 cd02027 APSK Adenosine 5'-phos 97.4 0.00066 1.4E-08 57.3 7.7 34 126-159 2-38 (149)
369 PRK03731 aroL shikimate kinase 97.4 0.00018 4E-09 62.1 4.4 32 124-155 3-34 (171)
370 COG2804 PulE Type II secretory 97.4 0.0005 1.1E-08 67.9 7.8 109 69-193 219-338 (500)
371 PRK13946 shikimate kinase; Pro 97.4 0.00015 3.3E-09 63.5 3.9 33 123-155 10-42 (184)
372 PF09848 DUF2075: Uncharacteri 97.4 0.00064 1.4E-08 66.0 8.6 23 125-147 3-25 (352)
373 PF10236 DAP3: Mitochondrial r 97.4 0.017 3.7E-07 54.9 18.0 94 183-276 157-283 (309)
374 PRK14528 adenylate kinase; Pro 97.4 0.00017 3.7E-09 63.3 4.2 31 124-154 2-32 (186)
375 PLN02200 adenylate kinase fami 97.4 0.0002 4.3E-09 65.3 4.7 37 123-161 43-79 (234)
376 PF00437 T2SE: Type II/IV secr 97.4 0.00023 5E-09 66.4 5.3 100 82-193 98-208 (270)
377 PRK08233 hypothetical protein; 97.4 0.0016 3.4E-08 56.6 10.3 33 124-156 4-37 (182)
378 PRK13764 ATPase; Provisional 97.4 0.00048 1E-08 70.5 7.8 67 123-193 257-335 (602)
379 PRK04328 hypothetical protein; 97.4 0.0029 6.3E-08 58.2 12.4 37 119-155 19-58 (249)
380 PF04665 Pox_A32: Poxvirus A32 97.4 0.0022 4.8E-08 58.2 11.2 135 120-270 10-170 (241)
381 COG0563 Adk Adenylate kinase a 97.4 0.00021 4.5E-09 62.2 4.2 28 125-152 2-29 (178)
382 TIGR01351 adk adenylate kinase 97.4 0.00018 3.9E-09 64.4 3.9 29 126-154 2-30 (210)
383 TIGR02782 TrbB_P P-type conjug 97.3 0.00065 1.4E-08 64.2 7.9 70 123-192 132-214 (299)
384 PRK11889 flhF flagellar biosyn 97.3 0.0042 9.2E-08 60.2 13.3 35 123-157 241-278 (436)
385 cd03216 ABC_Carb_Monos_I This 97.3 0.0015 3.3E-08 55.9 9.5 72 121-193 24-111 (163)
386 PF00448 SRP54: SRP54-type pro 97.3 0.0032 6.9E-08 55.7 11.6 25 123-147 1-25 (196)
387 cd01122 GP4d_helicase GP4d_hel 97.3 0.0022 4.7E-08 59.8 11.1 37 120-156 27-67 (271)
388 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00022 4.7E-09 62.4 4.2 30 124-153 4-33 (188)
389 PRK02496 adk adenylate kinase; 97.3 0.00019 4.2E-09 62.8 3.8 30 125-154 3-32 (184)
390 PRK10436 hypothetical protein; 97.3 0.00077 1.7E-08 67.3 8.4 104 75-193 185-298 (462)
391 COG1936 Predicted nucleotide k 97.3 0.00016 3.5E-09 61.3 3.0 30 125-155 2-31 (180)
392 COG1116 TauB ABC-type nitrate/ 97.3 0.00039 8.4E-09 62.6 5.5 24 122-145 28-51 (248)
393 PF13479 AAA_24: AAA domain 97.3 0.0013 2.9E-08 59.0 9.1 21 123-143 3-23 (213)
394 COG1066 Sms Predicted ATP-depe 97.3 0.0023 4.9E-08 61.6 10.9 83 118-200 88-186 (456)
395 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00074 1.6E-08 62.1 7.6 34 126-159 2-38 (249)
396 PRK13900 type IV secretion sys 97.3 0.00083 1.8E-08 64.4 7.9 71 123-193 160-246 (332)
397 PRK00279 adk adenylate kinase; 97.3 0.00024 5.2E-09 63.9 4.1 29 126-154 3-31 (215)
398 PRK14527 adenylate kinase; Pro 97.3 0.00022 4.8E-09 62.8 3.7 32 123-154 6-37 (191)
399 PRK06696 uridine kinase; Valid 97.3 0.00072 1.6E-08 61.1 7.2 39 123-161 22-63 (223)
400 PF06414 Zeta_toxin: Zeta toxi 97.3 0.0011 2.3E-08 58.9 8.2 42 121-162 13-55 (199)
401 PRK04040 adenylate kinase; Pro 97.3 0.00029 6.3E-09 61.9 4.4 30 123-152 2-33 (188)
402 cd03243 ABC_MutS_homologs The 97.3 0.0027 5.9E-08 56.4 10.5 22 124-145 30-51 (202)
403 COG2874 FlaH Predicted ATPases 97.3 0.0044 9.6E-08 54.5 11.2 120 117-248 22-178 (235)
404 PRK12724 flagellar biosynthesi 97.3 0.0049 1.1E-07 60.3 12.8 35 123-157 223-261 (432)
405 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0051 1.1E-07 55.6 12.3 37 120-156 13-52 (224)
406 COG1126 GlnQ ABC-type polar am 97.2 0.00087 1.9E-08 59.0 6.8 23 123-145 28-50 (240)
407 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0022 4.7E-08 54.5 9.3 71 122-193 24-109 (157)
408 TIGR00064 ftsY signal recognit 97.2 0.019 4.2E-07 53.5 16.2 36 122-157 71-109 (272)
409 TIGR02858 spore_III_AA stage I 97.2 0.00036 7.8E-09 64.8 4.6 25 124-148 112-136 (270)
410 PF13245 AAA_19: Part of AAA d 97.2 0.00056 1.2E-08 50.6 4.7 24 124-147 11-35 (76)
411 PF00406 ADK: Adenylate kinase 97.2 0.00023 4.9E-09 60.2 3.0 32 128-161 1-32 (151)
412 PLN02674 adenylate kinase 97.2 0.00035 7.6E-09 63.7 4.3 32 123-154 31-62 (244)
413 COG4178 ABC-type uncharacteriz 97.2 0.00069 1.5E-08 68.8 6.6 27 120-146 416-442 (604)
414 cd02019 NK Nucleoside/nucleoti 97.2 0.00048 1E-08 49.9 4.0 22 126-147 2-23 (69)
415 PLN02199 shikimate kinase 97.2 0.00063 1.4E-08 63.3 5.6 33 123-155 102-134 (303)
416 TIGR02538 type_IV_pilB type IV 97.2 0.00096 2.1E-08 68.7 7.5 102 77-193 285-396 (564)
417 COG5245 DYN1 Dynein, heavy cha 97.2 0.0011 2.3E-08 72.4 7.8 144 120-272 1491-1660(3164)
418 TIGR02238 recomb_DMC1 meiotic 97.2 0.003 6.5E-08 60.0 10.3 40 119-158 92-140 (313)
419 cd01130 VirB11-like_ATPase Typ 97.2 0.00066 1.4E-08 59.6 5.4 70 123-192 25-110 (186)
420 PRK13833 conjugal transfer pro 97.2 0.0014 3.1E-08 62.3 7.9 70 123-192 144-225 (323)
421 cd03115 SRP The signal recogni 97.2 0.0021 4.6E-08 55.5 8.5 33 126-158 3-38 (173)
422 PF13238 AAA_18: AAA domain; P 97.1 0.00033 7.2E-09 56.9 3.0 22 126-147 1-22 (129)
423 PF01583 APS_kinase: Adenylyls 97.1 0.0022 4.8E-08 54.2 8.0 39 124-162 3-44 (156)
424 cd03238 ABC_UvrA The excision 97.1 0.005 1.1E-07 53.4 10.5 26 121-146 19-44 (176)
425 TIGR00767 rho transcription te 97.1 0.0016 3.4E-08 63.3 7.9 27 122-148 167-193 (415)
426 PRK01184 hypothetical protein; 97.1 0.00046 1E-08 60.3 3.9 29 125-154 3-31 (184)
427 PRK10416 signal recognition pa 97.1 0.022 4.8E-07 54.3 15.6 35 122-156 113-150 (318)
428 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00061 1.3E-08 56.0 4.3 30 121-150 20-49 (133)
429 TIGR02236 recomb_radA DNA repa 97.1 0.0047 1E-07 58.8 11.0 40 119-158 91-139 (310)
430 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0022 4.7E-08 57.6 8.2 22 124-145 30-51 (213)
431 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0064 1.4E-07 54.0 11.1 21 124-144 29-49 (200)
432 smart00487 DEXDc DEAD-like hel 97.1 0.0056 1.2E-07 53.1 10.7 24 124-147 25-49 (201)
433 PRK09519 recA DNA recombinatio 97.1 0.0047 1E-07 65.1 11.6 78 119-196 56-152 (790)
434 PRK04301 radA DNA repair and r 97.1 0.005 1.1E-07 58.8 11.0 40 119-158 98-146 (317)
435 PRK14526 adenylate kinase; Pro 97.1 0.00054 1.2E-08 61.3 4.0 29 125-153 2-30 (211)
436 PLN03187 meiotic recombination 97.1 0.0066 1.4E-07 58.3 11.7 40 119-158 122-170 (344)
437 PRK00889 adenylylsulfate kinas 97.1 0.0032 6.8E-08 54.6 8.7 37 123-159 4-43 (175)
438 PRK04182 cytidylate kinase; Pr 97.1 0.00059 1.3E-08 59.2 4.0 29 125-153 2-30 (180)
439 COG4608 AppF ABC-type oligopep 97.1 0.0038 8.1E-08 57.1 9.2 26 122-147 38-63 (268)
440 TIGR02788 VirB11 P-type DNA tr 97.1 0.00085 1.8E-08 63.8 5.4 71 122-192 143-228 (308)
441 COG0529 CysC Adenylylsulfate k 97.1 0.0029 6.3E-08 53.9 7.9 39 123-161 23-64 (197)
442 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.011 2.4E-07 50.2 11.5 22 125-146 4-25 (159)
443 PHA02530 pseT polynucleotide k 97.0 0.00064 1.4E-08 64.4 4.4 31 124-154 3-34 (300)
444 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.011 2.4E-07 53.6 12.4 38 119-156 16-56 (229)
445 PF13481 AAA_25: AAA domain; P 97.0 0.0058 1.3E-07 53.6 10.3 26 122-147 31-56 (193)
446 PRK13851 type IV secretion sys 97.0 0.00083 1.8E-08 64.5 5.0 71 122-192 161-246 (344)
447 COG2909 MalT ATP-dependent tra 97.0 0.0095 2.1E-07 62.2 12.8 162 123-300 37-236 (894)
448 PF13086 AAA_11: AAA domain; P 97.0 0.00082 1.8E-08 60.6 4.7 22 126-147 20-41 (236)
449 PF13521 AAA_28: AAA domain; P 97.0 0.0006 1.3E-08 58.4 3.6 26 126-152 2-27 (163)
450 COG2805 PilT Tfp pilus assembl 97.0 0.0035 7.7E-08 57.9 8.6 69 125-193 127-209 (353)
451 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0024 5.1E-08 53.6 7.1 71 121-193 24-99 (144)
452 PTZ00035 Rad51 protein; Provis 97.0 0.0065 1.4E-07 58.4 10.9 27 119-145 114-140 (337)
453 TIGR02173 cyt_kin_arch cytidyl 97.0 0.00072 1.6E-08 58.1 4.0 29 126-154 3-31 (171)
454 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.0025 5.4E-08 61.7 8.1 70 123-192 134-222 (358)
455 KOG3928 Mitochondrial ribosome 97.0 0.011 2.4E-07 56.9 12.0 53 247-301 402-458 (461)
456 cd03222 ABC_RNaseL_inhibitor T 97.0 0.002 4.3E-08 56.0 6.6 72 121-193 23-100 (177)
457 cd01125 repA Hexameric Replica 97.0 0.025 5.5E-07 51.6 14.2 21 126-146 4-24 (239)
458 PRK05541 adenylylsulfate kinas 97.0 0.00097 2.1E-08 57.8 4.5 27 122-148 6-32 (176)
459 PRK13894 conjugal transfer ATP 97.0 0.0014 3E-08 62.4 5.9 70 123-192 148-229 (319)
460 TIGR02655 circ_KaiC circadian 97.0 0.006 1.3E-07 61.7 10.8 79 118-196 258-367 (484)
461 PF02562 PhoH: PhoH-like prote 97.0 0.0016 3.4E-08 57.7 5.8 24 124-147 20-43 (205)
462 TIGR03499 FlhF flagellar biosy 97.0 0.0054 1.2E-07 57.5 9.8 37 122-158 193-234 (282)
463 cd03246 ABCC_Protease_Secretio 97.0 0.0085 1.8E-07 51.8 10.4 26 122-147 27-52 (173)
464 COG1117 PstB ABC-type phosphat 97.0 0.0053 1.2E-07 54.1 8.9 23 123-145 33-55 (253)
465 TIGR01526 nadR_NMN_Atrans nico 97.0 0.0021 4.6E-08 61.5 7.1 34 123-156 162-195 (325)
466 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0083 1.8E-07 51.8 10.1 27 121-147 24-50 (173)
467 cd03214 ABC_Iron-Siderophores_ 96.9 0.0064 1.4E-07 52.9 9.3 27 121-147 23-49 (180)
468 PF01745 IPT: Isopentenyl tran 96.9 0.0011 2.4E-08 58.4 4.3 39 125-163 3-41 (233)
469 PLN02459 probable adenylate ki 96.9 0.001 2.3E-08 61.0 4.4 31 124-154 30-60 (261)
470 TIGR02655 circ_KaiC circadian 96.9 0.011 2.4E-07 59.8 12.3 38 119-156 17-58 (484)
471 PRK14529 adenylate kinase; Pro 96.9 0.0008 1.7E-08 60.6 3.5 29 125-153 2-30 (223)
472 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0056 1.2E-07 58.3 9.4 40 119-158 92-140 (316)
473 PRK10078 ribose 1,5-bisphospho 96.9 0.00098 2.1E-08 58.5 3.9 29 124-152 3-31 (186)
474 TIGR01425 SRP54_euk signal rec 96.9 0.019 4.1E-07 56.6 13.2 201 122-343 99-343 (429)
475 PRK12339 2-phosphoglycerate ki 96.9 0.0013 2.9E-08 58.1 4.8 29 123-151 3-31 (197)
476 PRK10867 signal recognition pa 96.9 0.008 1.7E-07 59.5 10.6 200 122-342 99-343 (433)
477 cd03228 ABCC_MRP_Like The MRP 96.9 0.01 2.2E-07 51.2 10.2 27 121-147 26-52 (171)
478 cd03227 ABC_Class2 ABC-type Cl 96.9 0.0067 1.4E-07 51.9 8.9 22 124-145 22-43 (162)
479 COG2884 FtsE Predicted ATPase 96.9 0.0047 1E-07 53.4 7.7 26 122-147 27-52 (223)
480 PRK12726 flagellar biosynthesi 96.8 0.0074 1.6E-07 58.3 9.7 62 92-157 179-243 (407)
481 PRK08099 bifunctional DNA-bind 96.8 0.0023 5E-08 62.9 6.5 31 123-153 219-249 (399)
482 PRK12608 transcription termina 96.8 0.0037 8E-08 60.2 7.6 25 123-147 133-157 (380)
483 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0026 5.6E-08 60.5 6.4 54 86-147 58-112 (358)
484 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.014 3.1E-07 52.6 11.0 23 123-145 31-53 (222)
485 smart00534 MUTSac ATPase domai 96.8 0.0047 1E-07 54.1 7.7 20 126-145 2-21 (185)
486 COG1120 FepC ABC-type cobalami 96.8 0.0091 2E-07 54.7 9.7 25 123-147 28-52 (258)
487 PRK12338 hypothetical protein; 96.8 0.0016 3.5E-08 61.5 4.7 30 123-152 4-33 (319)
488 PRK05480 uridine/cytidine kina 96.8 0.0022 4.9E-08 57.2 5.4 37 123-159 6-43 (209)
489 PRK13808 adenylate kinase; Pro 96.8 0.0013 2.7E-08 62.6 3.9 29 126-154 3-31 (333)
490 cd02022 DPCK Dephospho-coenzym 96.8 0.0015 3.2E-08 57.0 4.1 34 126-162 2-35 (179)
491 COG1125 OpuBA ABC-type proline 96.8 0.017 3.7E-07 52.3 10.7 23 123-145 27-49 (309)
492 cd03247 ABCC_cytochrome_bd The 96.8 0.022 4.9E-07 49.4 11.5 27 121-147 26-52 (178)
493 cd03282 ABC_MSH4_euk MutS4 hom 96.8 0.022 4.8E-07 50.7 11.5 22 124-145 30-51 (204)
494 cd02024 NRK1 Nicotinamide ribo 96.8 0.0015 3.2E-08 57.3 3.9 30 126-155 2-32 (187)
495 PRK00091 miaA tRNA delta(2)-is 96.8 0.0016 3.5E-08 61.6 4.5 36 124-159 5-40 (307)
496 PLN02165 adenylate isopentenyl 96.7 0.0016 3.6E-08 61.7 4.2 35 123-157 43-77 (334)
497 PF08423 Rad51: Rad51; InterP 96.7 0.0075 1.6E-07 55.7 8.5 39 120-158 35-82 (256)
498 COG1855 ATPase (PilT family) [ 96.7 0.002 4.4E-08 62.4 4.7 45 84-147 243-287 (604)
499 cd02028 UMPK_like Uridine mono 96.7 0.0021 4.5E-08 56.1 4.5 35 126-160 2-39 (179)
500 PLN03186 DNA repair protein RA 96.7 0.013 2.9E-07 56.3 10.4 40 119-158 119-167 (342)
No 1
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-59 Score=427.85 Aligned_cols=337 Identities=58% Similarity=0.909 Sum_probs=316.4
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHhHHHHhHHhCC------CCCCCCccchhhhccccC
Q 016044 6 GNSSETKFLQELILYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEISKRLGR------PLIQTNPYEDVIACDVIN 79 (396)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 79 (396)
++..+..++..++.+++..++++|...+.++.++|+.....++.....+..++++. .++..++||..++++++.
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~~~~~~~eS~~~~~~~l~~~~~~~s~k~~~i~~ne~E~~i~s~~v~ 83 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDPNLKASRESLEKTEELLKNLEAELSLKYRIIQKNEYEKRIASDVVP 83 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccChhhhhhHHHHHHHHHHHHhhhhccchhhhhhhhhHHHHHhhhcccc
Confidence 45678889999999999999999999999999999888888888888888888877 589999999999999999
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 80 PDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 80 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
|....++|+||+|++.+++++++.+..|+++|++|..++++++++|||||||||||||++|+++|++.|.+|+.+..+.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE 239 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 239 (396)
.++|+|++++.+..+|..|.+.+|++|||||+|.+++.|+.+++++...+.++|+..|||+.+..+.+|+|+||||+|.+
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred CcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH----
Q 016044 240 LDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE---- 315 (396)
Q Consensus 240 l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~---- 315 (396)
+|++++||++.+++++.|+..+|.+||+.+++...+++++|+.++|..|+||||+||+++|+.|+..++++++...
T Consensus 244 lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~ 323 (386)
T KOG0737|consen 244 LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLL 323 (386)
T ss_pred HHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred -hcC-----CC------CCCCCCCCHHHHHHHHHhcccc
Q 016044 316 -RKG-----KP------AAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 316 -~~~-----~~------~~~~~~i~~~d~~~al~~~~~~ 342 (396)
... .. ....++++++||.++...+.++
T Consensus 324 d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 324 DLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred hhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 110 00 1126899999999999977655
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-54 Score=392.77 Aligned_cols=246 Identities=42% Similarity=0.706 Sum_probs=231.1
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|+++++||+|++++++++++.+.+|+.+|++|...+ +.||+|||||||||||||+||||+|++.++.|+.+.+++|.
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~G-I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELG-IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcC-CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 56789999999999999999999999999999999976 89999999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC---CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
.+|+|++.+.++.+|..|+..+||||||||||++.++|.. +...-..|.+.+|+.+|||+.. .++|-||+|||++
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~ 300 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRP 300 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCc
Confidence 9999999999999999999999999999999999988753 3344556777799999999976 6789999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.|||||+| |||+.|+||+|+.+.|.+||+.+.+++.+..++|++.||+.++|+||+||+++|.+|.+.|+++--
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R--- 377 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR--- 377 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
..+|++||.+|..++-.
T Consensus 378 ---------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 ---------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ---------CeecHHHHHHHHHHHHh
Confidence 66999999999998754
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-54 Score=412.24 Aligned_cols=301 Identities=31% Similarity=0.559 Sum_probs=273.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..++++|++|+|+++...+|.+.+.. +++|+.|...+ +.||+|||||||||||||+||+++|.+++.||+.++++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lG-v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv 260 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLG-VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV 260 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcC-CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh
Confidence 34578999999999999999999988 99999999976 78999999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCC--CCcEEEEEecCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQ--NARVMVLAATNRPS 238 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~v~vI~atn~~~ 238 (396)
+.+.|++++.++.+|+.|+.+.|||+||||||.+.++|.....+.-+|+..+|+..||++.... +.+|+||||||+|+
T Consensus 261 SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 261 SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 9999999999999999999999999999999999999999888888999999999999987543 47899999999999
Q ss_pred CCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 016044 239 ELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEER 316 (396)
Q Consensus 239 ~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~ 316 (396)
.||++|+| ||++.|.+..|+..+|.+||+.++++..+..++++..||+.|.||.|+||.+||.+|+..|++|+.+...
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999876332
Q ss_pred c---------C--------CC---------------------------------CCCCCCCCHHHHHHHHHhcccchhhh
Q 016044 317 K---------G--------KP---------------------------------AAAPRPLSRLDLEKVLTTSRKTRVAA 346 (396)
Q Consensus 317 ~---------~--------~~---------------------------------~~~~~~i~~~d~~~al~~~~~~~~~~ 346 (396)
. + .. ....-.|+.+||+.|+..++|+ +.
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPS--ak 498 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPS--AK 498 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcc--hh
Confidence 1 0 00 0022457899999999999999 88
Q ss_pred hhhhccCCCCCccccCCCccHhHHHHHHHHHHHHHHHHhccCCCCCCC
Q 016044 347 TEYTLNSQSSGWSRNNESNDYQVQAAISELSRLVVSQIMNIQSEPDTQ 394 (396)
Q Consensus 347 ~~~~~~~~~~~w~di~~~~~~~~~~~L~ei~~~~~~~~~~~~~~~~~~ 394 (396)
++....+|.|+|+|||+++ +++.+| ..++.||.++|+.|
T Consensus 499 REGF~tVPdVtW~dIGaL~--~vR~eL-------~~aI~~PiK~pd~~ 537 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALE--EVRLEL-------NMAILAPIKRPDLF 537 (802)
T ss_pred cccceecCCCChhhcccHH--HHHHHH-------HHHHhhhccCHHHH
Confidence 8999999999999999998 555544 44588999999876
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-52 Score=409.31 Aligned_cols=250 Identities=37% Similarity=0.670 Sum_probs=239.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.++++|+||+|++++|++|++.+.||+++|+.|.+.+ +.||+|||||||||||||++||++|++++++|+.+.+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G-i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG-ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc-CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 56789999999999999999999999999999999976 88999999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL 240 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 240 (396)
++|+|++|+.++.+|+.|+...||||||||||++...|..+..++..|++++++.+|||+.. ..+|+|||+||+|+.|
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~--~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA--LKNVLVIAATNRPDMI 583 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc--cCcEEEEeccCChhhc
Confidence 99999999999999999999999999999999999999877778999999999999999986 4689999999999999
Q ss_pred cHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016044 241 DEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKG 318 (396)
Q Consensus 241 ~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~ 318 (396)
|++++| |||..+++|+|+.+.|.+|++.+++++++.+++|+++||+.|+||||+||.++|++|+..|+++.++.
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a---- 659 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEA---- 659 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccc----
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCCCCCCHHHHHHHHHhcccch
Q 016044 319 KPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 319 ~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
..|+.+||++|++..+++.
T Consensus 660 ------~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 660 ------TEITWQHFEEALKAVRPSL 678 (693)
T ss_pred ------ccccHHHHHHHHHhhcccC
Confidence 5699999999999999874
No 5
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-52 Score=382.54 Aligned_cols=268 Identities=38% Similarity=0.643 Sum_probs=242.5
Q ss_pred hccccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 74 ACDVINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
..+++. ..|.+.|+||.|++++|+-|++.|+.|+..|+.|... .+|.+|||++||||||||+||+|+|.+++..|+.
T Consensus 199 erdIl~-~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi--rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFN 275 (491)
T KOG0738|consen 199 ERDILQ-RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI--RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFN 275 (491)
T ss_pred HHHHhc-cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc--ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEE
Confidence 344444 5678999999999999999999999999999999875 6899999999999999999999999999999999
Q ss_pred EecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC-CCchHHHHhhHHHHHHHhhccCcCCC--CcEEE
Q 016044 154 VRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR-TSDHEALTNMKTEFMALWDGFTTDQN--ARVMV 230 (396)
Q Consensus 154 i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~--~~v~v 230 (396)
|+.+.+.++|.|++++.++-+|..|+.+.|++|||||||+|+++|. ++++++.+|++++|+.+|||+..... ..|+|
T Consensus 276 VSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmV 355 (491)
T KOG0738|consen 276 VSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMV 355 (491)
T ss_pred echhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEE
Confidence 9999999999999999999999999999999999999999998875 56789999999999999999875322 34889
Q ss_pred EEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 016044 231 LAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310 (396)
Q Consensus 231 I~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~ 310 (396)
+++||.||+||++++|||.++|++|+|+.+.|..+++..++.....++++++.|++.++||||+||.++|++|.+.+++|
T Consensus 356 LAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 356 LAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred EeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhc-----CCCCCCCCCCCHHHHHHHHHhcccchh
Q 016044 311 LLDEERK-----GKPAAAPRPLSRLDLEKVLTTSRKTRV 344 (396)
Q Consensus 311 ~~~~~~~-----~~~~~~~~~i~~~d~~~al~~~~~~~~ 344 (396)
.+..... .....-..|++++||+.|+++++|+..
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 7653221 111223378999999999999999853
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-52 Score=398.37 Aligned_cols=259 Identities=35% Similarity=0.598 Sum_probs=241.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
.|+++|+||+|+++++.+|..++.+|+++|+.|...+ +.+|.|||||||||||||.+|+|+|++.|++|+.+.+++|++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lG-i~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALG-IDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhC-CCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 5789999999999999999999999999999999976 777999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCc
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 241 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 241 (396)
+|+|++++.++.+|..|+...||||||||+|.|.+.|.........|++++|+.+|||+.. ..+|.||++||+|+.+|
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIID 661 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999975 66899999999999999
Q ss_pred HHHHh--ccCCceEeCCCCHHHHHHHHHHHhc--CCCCCCCCCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 242 EAILR--RLPQAFEIGMPDRKERAQILKVILK--GEKVEENIDFDYLAGLCE--GFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 242 ~~l~~--R~~~~i~~~~P~~~er~~il~~~l~--~~~~~~~~~l~~la~~~~--g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
++++| ||++.+++++|+.++|..||+.+.+ +.++..++++++||+.+. ||||+||..||++|.+.|+++.+...
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999 9999999999999999999999999 777889999999999877 99999999999999999999987654
Q ss_pred hcCCCCC----CCCCCCHHHHHHHHHhcccch
Q 016044 316 RKGKPAA----APRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 316 ~~~~~~~----~~~~i~~~d~~~al~~~~~~~ 343 (396)
....... ....+++.||++|+++++|+.
T Consensus 742 ~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 742 DSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred cccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 4332211 245689999999999999984
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-49 Score=388.08 Aligned_cols=268 Identities=32% Similarity=0.580 Sum_probs=247.6
Q ss_pred hccccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 74 ACDVINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
+..+-.|..|+++|+||+|++++|.++.+.+..|++||++|..+ +++..|||||||||||||.+|||+|.++...|++
T Consensus 658 s~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlS 735 (953)
T KOG0736|consen 658 SDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVATECSLNFLS 735 (953)
T ss_pred hhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHhhceeeEEe
Confidence 34455788899999999999999999999999999999999886 6778999999999999999999999999999999
Q ss_pred EecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC--CchHHHHhhHHHHHHHhhccCcCCCCcEEEE
Q 016044 154 VRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT--SDHEALTNMKTEFMALWDGFTTDQNARVMVL 231 (396)
Q Consensus 154 i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 231 (396)
+.++++.+.|+|++|++++.+|+.|+...|||||+||+|+++++|.. .....+.|+..+++.++||+.......|+||
T Consensus 736 VKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 736 VKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred ecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 99999999999999999999999999999999999999999998854 3456889999999999999997678899999
Q ss_pred EecCCCCCCcHHHHh--ccCCceEeCCC-CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCC-CCcHHHHHHHHHHHHHHH
Q 016044 232 AATNRPSELDEAILR--RLPQAFEIGMP-DRKERAQILKVILKGEKVEENIDFDYLAGLCE-GFTGSDLLEVCKQAAYFS 307 (396)
Q Consensus 232 ~atn~~~~l~~~l~~--R~~~~i~~~~P-~~~er~~il~~~l~~~~~~~~~~l~~la~~~~-g~s~~di~~l~~~A~~~a 307 (396)
||||+|+.||++|+| |||+-++++++ +.+.+..+|+...+++.++.++++.++|+.+. .|||+|+..+|.+|++.|
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~A 895 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAA 895 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHH
Confidence 999999999999999 99999999988 56778889999999999999999999999998 799999999999999999
Q ss_pred HHHHHHHHhcC-----CCCCCCCCCCHHHHHHHHHhcccch
Q 016044 308 IRELLDEERKG-----KPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 308 ~~~~~~~~~~~-----~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
++|.++....+ ........|+++||.++.+++.|+.
T Consensus 896 ikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 896 IKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 99998877766 3445567799999999999999984
No 8
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-47 Score=340.05 Aligned_cols=264 Identities=39% Similarity=0.640 Sum_probs=240.3
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 77 VINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
.|-.+.|++.|+|+.|++.+|++|++.+++|++.|++|... ..|.+|+||||||||||+.||+++|.+.+..|++++.
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSS 199 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 199 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeeh
Confidence 44557899999999999999999999999999999999876 5688999999999999999999999999999999999
Q ss_pred ccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 157 SNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 157 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
+++.++|.|++++.+..+|..|+.++|+||||||||.+++.+..++.++.+|+..+|+-+|.|... ++..++|+++||-
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~-d~~gvLVLgATNi 278 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN-DNDGVLVLGATNI 278 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc-CCCceEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999875 4678999999999
Q ss_pred CCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 237 PSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 237 ~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
||.||.+++|||.++|++|+|+...|..+++.++...+.. .+-|+.+|++.|+||||+||.-++++|.+..+++...+.
T Consensus 279 Pw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAt 358 (439)
T KOG0739|consen 279 PWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSAT 358 (439)
T ss_pred chhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhh
Confidence 9999999999999999999999999999999999766544 567899999999999999999999999999999876542
Q ss_pred hc----C-------C----------C-------------CCCCCCCCHHHHHHHHHhcccch
Q 016044 316 RK----G-------K----------P-------------AAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 316 ~~----~-------~----------~-------------~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
+- + . . .--..++|+.||..+++..+|+.
T Consensus 359 hFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTv 420 (439)
T KOG0739|consen 359 HFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTV 420 (439)
T ss_pred hhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCC
Confidence 21 0 0 0 00246899999999999999985
No 9
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-44 Score=340.87 Aligned_cols=242 Identities=34% Similarity=0.513 Sum_probs=224.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
..+++|+|+.|.+++|++|++.+.+ ++.|..|.+.+ -.-|+||||+||||||||+||||+|.+.+.||++..++++-.
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 3478999999999999999998876 99999999854 245899999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCc
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 241 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 241 (396)
.++|...+.++.+|..|+...||||||||||.+.++|...........+++++..|||+.. +.+|+||++||.|+.||
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q--NeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ--NEGIIVIGATNFPEALD 453 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc--CCceEEEeccCChhhhh
Confidence 9999999999999999999999999999999999999988887888899999999999976 77899999999999999
Q ss_pred HHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016044 242 EAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGK 319 (396)
Q Consensus 242 ~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~ 319 (396)
++|.| |||.++.+|.||...|.+||+.++.+..+..++|+.-||+-|.||+|+||.++++.|+..|..+..
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga------- 526 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGA------- 526 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCc-------
Confidence 99999 999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred CCCCCCCCCHHHHHHHHHhc
Q 016044 320 PAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 320 ~~~~~~~i~~~d~~~al~~~ 339 (396)
..++|.|++.|-.++
T Consensus 527 -----~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 527 -----EMVTMKHLEFAKDRI 541 (752)
T ss_pred -----ccccHHHHhhhhhhe
Confidence 457888888776554
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-43 Score=304.28 Aligned_cols=245 Identities=37% Similarity=0.637 Sum_probs=227.6
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 80 PDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 80 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
.+.|++++.||+|++-.|+++++.+.+|+.+.++|...+ +.||+|||+||||||||||||+++|++..+.|+.+.++++
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qig-idpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIG-IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhC-CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 356789999999999999999999999999999999875 8899999999999999999999999999999999999999
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC---CCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR---TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~---~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
..+|.|+..+.++.+|+.|+.+.|+||||||+|.+..++. .+......+++.+++++|||+.. ..++-+|.+||+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatnr 303 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNR 303 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCc
Confidence 9999999999999999999999999999999999987764 34445567889999999999976 667999999999
Q ss_pred CCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 237 PSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 237 ~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
.+.+||+++| |+++.|+||.|+..+++-++..+..++.+.+++|++.+..+-+..|++||..+|++|.+.|+++..
T Consensus 304 adtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr-- 381 (408)
T KOG0727|consen 304 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR-- 381 (408)
T ss_pred ccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc--
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred HhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 315 ERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 315 ~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
..+...||+++.+..
T Consensus 382 ----------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 ----------YVVLQKDFEKAYKTV 396 (408)
T ss_pred ----------eeeeHHHHHHHHHhh
Confidence 447789999998865
No 11
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-43 Score=342.24 Aligned_cols=280 Identities=34% Similarity=0.587 Sum_probs=261.7
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK 162 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~ 162 (396)
++++ ++++|.....+.+++.+.+|+.++..|...+ ..+|+++|+|||||||||++++++|++.++.++.+++++++.+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k 257 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK 257 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHh
Confidence 4566 7999999999999999999999999998875 7899999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHhC-CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCc
Q 016044 163 WFGDAQKLVAAVFSLAYKLQ-PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 241 (396)
Q Consensus 163 ~~g~~~~~~~~~f~~a~~~~-p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 241 (396)
+.|+++..++..|..+.+++ |++|||||+|.+++++..... ...++..+++.+++++.. ..+++++++||+|+.|+
T Consensus 258 ~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred cccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 99999999999999999999 999999999999998876555 678899999999999874 57899999999999999
Q ss_pred HHHHh-ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016044 242 EAILR-RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKP 320 (396)
Q Consensus 242 ~~l~~-R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~ 320 (396)
++++| ||+..+.+..|+..+|.+|++.+.+.++..++.++..+|..+.||+|+|+..+|++|.+.++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999988899999999999999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHhcccchhhhhhhhccCCCCCccccCCCccHhHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 016044 321 AAAPRPLSRLDLEKVLTTSRKTRVAATEYTLNSQSSGWSRNNESNDYQVQAAISELSRLVVSQIMNIQSEPDTQD 395 (396)
Q Consensus 321 ~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~w~di~~~~~~~~~~~L~ei~~~~~~~~~~~~~~~~~~~ 395 (396)
++++|..|+..++|+ +.++.....|+++|+||||++ ++|..|++. |+||+.+|+.|.
T Consensus 405 -------~~~~~~~A~~~i~ps--a~Re~~ve~p~v~W~dIGGlE--~lK~elq~~-------V~~p~~~pe~F~ 461 (693)
T KOG0730|consen 405 -------TLEIFQEALMGIRPS--ALREILVEMPNVSWDDIGGLE--ELKRELQQA-------VEWPLKHPEKFA 461 (693)
T ss_pred -------hHHHHHHHHhcCCch--hhhheeccCCCCChhhccCHH--HHHHHHHHH-------HhhhhhchHHHH
Confidence 678999999999999 778878889999999999999 999999888 788888888763
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-42 Score=299.09 Aligned_cols=244 Identities=34% Similarity=0.591 Sum_probs=226.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..|+.+++-++|++.+++++++.+.+|.+||++|...+ +..|+|+|||||||+|||.+|+++|++..+.|+.++++++.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLG-IaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcC-CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 45778899999999999999999999999999999976 77789999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
.+|+|+..+.++.+|-.|+.+.|+|||+||||++.+.+..+ ......|...++++++||+.. ..++-+|.+||+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--tknikvimatnri 296 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMATNRI 296 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc--ccceEEEEecccc
Confidence 99999999999999999999999999999999998776432 234455667789999999986 5679999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+-+|++++| |+++.|+||+|+.+.|.+||+.+.+++++...+++..+|....|-||++++.+|.+|.+.|+++-.
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr--- 373 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR--- 373 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
..+|.+||+-|..++
T Consensus 374 ---------vhvtqedfemav~kv 388 (404)
T KOG0728|consen 374 ---------VHVTQEDFEMAVAKV 388 (404)
T ss_pred ---------ccccHHHHHHHHHHH
Confidence 679999999998876
No 13
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=298.30 Aligned_cols=242 Identities=34% Similarity=0.523 Sum_probs=215.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
.++++|+|++|++++|+..+-++ ..+.+|+.|... .|++||||||||||||++|+++|++.+.|++.++..++.+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~-~yLenPe~Fg~W----APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIM-EYLENPERFGDW----APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHH-HHhhChHHhccc----CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 35789999999999999876544 459999999764 4899999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC-CCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR-TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL 240 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 240 (396)
.++|+..+.++.++..|++..|||+||||+|.+.-.+. .........+.+.++..+||+.. +.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE--NEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc--CCceEEEeecCChhhc
Confidence 99999999999999999999999999999999876554 33344566788999999999974 7789999999999999
Q ss_pred cHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHHHHHHHhcCC
Q 016044 241 DEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLE-VCKQAAYFSIRELLDEERKGK 319 (396)
Q Consensus 241 ~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~-l~~~A~~~a~~~~~~~~~~~~ 319 (396)
|+++++||...|+|.+|+.+||..|++.+++.+++.-+.++..+++.+.|+||+||.. ++..|...|+.+-.
T Consensus 268 D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~------- 340 (368)
T COG1223 268 DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR------- 340 (368)
T ss_pred CHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-------
Confidence 9999999999999999999999999999999999998899999999999999999974 66666667776532
Q ss_pred CCCCCCCCCHHHHHHHHHhcccc
Q 016044 320 PAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 320 ~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
..|+.+|++.|+++.++.
T Consensus 341 -----e~v~~edie~al~k~r~~ 358 (368)
T COG1223 341 -----EKVEREDIEKALKKERKR 358 (368)
T ss_pred -----hhhhHHHHHHHHHhhccc
Confidence 458999999999987665
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-42 Score=299.82 Aligned_cols=247 Identities=34% Similarity=0.591 Sum_probs=226.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|.-+++||+|++..+++|.+.+++|+.|++.|...+ +.||+|+|+|||||||||++||+.|.+.+..|+.+.++.+.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lg-i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLG-IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcC-CCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 45678999999999999999999999999999999975 88999999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCch---HHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH---EALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
..|+|...+.++..|..|+...|+||||||+|.+..++..+.. ....|...++++++||+.+ +.++-||++||+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss--~~~vKviAATNRv 320 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS--DDRVKVIAATNRV 320 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC--ccceEEEeecccc
Confidence 9999999999999999999999999999999999888754432 2334556688999999976 6789999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+-+||+++| |+++.|+||.|+.+.|..|++.+.+++...+++++++||+.|++|.|++.+++|-+|.+.|+++..
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a--- 397 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA--- 397 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
..++.+||..++..++..
T Consensus 398 ---------tev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 398 ---------TEVTHEDFMEGILEVQAK 415 (424)
T ss_pred ---------ccccHHHHHHHHHHHHHh
Confidence 558999999998877544
No 15
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=322.62 Aligned_cols=247 Identities=38% Similarity=0.619 Sum_probs=223.8
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 80 PDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 80 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
.+.|+++|+||+|++.+|+++++.+.+|+.+++.|...+ +.+|+|+||+||||||||++|+++|++++.+|+.+.++++
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G-l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG-IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 356889999999999999999999999999999999865 6789999999999999999999999999999999999999
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC---CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
..++.|+++..++.+|..++..+|+||||||+|.++.++.. +......+.+.+++..++++.. ..++++|++||+
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~ 293 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNR 293 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCC
Confidence 99999999999999999999999999999999999876532 2233455677888888888754 457899999999
Q ss_pred CCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 237 PSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 237 ~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
++.+|++++| ||+..|+|++|+.++|..||+.++.+..+..++++..++..++||||+||.++|++|.+.|+++..
T Consensus 294 ~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~-- 371 (398)
T PTZ00454 294 ADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR-- 371 (398)
T ss_pred chhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 9999999998 999999999999999999999999998888899999999999999999999999999999998731
Q ss_pred HhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 315 ERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 315 ~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
..|+.+||.+|++.+..
T Consensus 372 ----------~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 372 ----------YVILPKDFEKGYKTVVR 388 (398)
T ss_pred ----------CccCHHHHHHHHHHHHh
Confidence 57999999999998643
No 16
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-40 Score=323.29 Aligned_cols=230 Identities=36% Similarity=0.587 Sum_probs=220.5
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchh
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKW 163 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~ 163 (396)
.+.|+||+|+.++|+.+++.+.||.++|.+|...+ ++-+.|||||||||||||.+|.++|..++..|+++.++++.++|
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~p-lr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCP-LRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCC-cccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 48999999999999999999999999999999986 67789999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHH
Q 016044 164 FGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 243 (396)
Q Consensus 164 ~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 243 (396)
+|.+++.++.+|..|+..+|||||+||+|+++++|.....+...|+.++++.+|||... -.+|.|+++|.+|+.+|++
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg--l~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG--LDGVYILAATSRPDLIDPA 819 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc--cceEEEEEecCCccccCHh
Confidence 99999999999999999999999999999999999988889999999999999999875 5679999999999999999
Q ss_pred HHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 016044 244 ILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEER 316 (396)
Q Consensus 244 l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~ 316 (396)
++| |+|+.++.+.|+..+|.+|++.+......+.++|++.+|..|+||||+||..++..|.+.|+++......
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 999 9999999999999999999999999888999999999999999999999999999999999999876544
No 17
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=323.98 Aligned_cols=261 Identities=44% Similarity=0.699 Sum_probs=241.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
...++.|+||.|++.+|+.+.+.+++|+.++++|... ..+.+++||.||||+|||+|++++|.++++.|+.++++.+.
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 3457999999999999999999999999999999875 56789999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL 240 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 240 (396)
++|.|++++.++.+|..|+..+|+|+||||+|.++.++....++...++..+++..+++......++|++|||||+||.+
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred cHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH-HhcC
Q 016044 241 DEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE-ERKG 318 (396)
Q Consensus 241 ~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~-~~~~ 318 (396)
|++++|||..++++|+|+.+.|..+|+.++.+.+.. .+.+++.+++.|+||+++||.++|.+|++..++..... ....
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~ 383 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEF 383 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhh
Confidence 999999999999999999999999999999877433 55789999999999999999999999999999887654 3333
Q ss_pred CCCCCCCCCCHHHHHHHHHhcccch
Q 016044 319 KPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 319 ~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
......++++..||..+++.++++.
T Consensus 384 ~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 384 IDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred cchhccCCCCcchHHHHHHhhcccc
Confidence 4556779999999999999999984
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=301.50 Aligned_cols=244 Identities=34% Similarity=0.579 Sum_probs=224.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
.|.-+|+||+|++.+++++++.+.+|+.||+.|...+ +.||+||+|||+||||||.||+|+|+...+.|+.+-.+++..
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 4567999999999999999999999999999999865 889999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC---CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
+|.|+..+.++.+|+.|..+.|+|+||||||.+..+|-. +......|...++++++||+.+ .+.|-||.+||+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie 335 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIE 335 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEeccccc
Confidence 999999999999999999999999999999999887633 2233445556689999999986 67899999999999
Q ss_pred CCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 016044 239 ELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEER 316 (396)
Q Consensus 239 ~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~ 316 (396)
.|||+|.| |+++.|+|+.|+...++.|+..+..++.+..+++++.+...-+.+||+||+++|.+|.+.|+++..
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR---- 411 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR---- 411 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH----
Confidence 99999999 999999999999999999999999999999999999999888899999999999999999999854
Q ss_pred cCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 317 KGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 317 ~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
..++++||.+|.+.+-
T Consensus 412 --------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 412 --------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred --------hhccHHHHHHHHHHHH
Confidence 5699999999988763
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-40 Score=291.35 Aligned_cols=246 Identities=38% Similarity=0.646 Sum_probs=225.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|+++++|++|..+.++.+++.+..|+.+|+.|...+ +.||+|||+|||||||||..||++|+..++.|+.+-.+++.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lg-idppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLG-IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcC-CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 56889999999999999999999999999999999975 88999999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC---CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
.+|+|+..+.++.+|..|+..+.|+||+||+|.+.+.+.. +......+...+++.++||+.. .+++-|+.+||+|
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmatnrp 326 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNRP 326 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCC
Confidence 9999999999999999999988999999999999887643 2334455666688899999975 6789999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.||++|+| |+++.++|.+|+.+.|..|++.+.+.+..+.++-++.+|+.|..-+|++|+.+|.+|.+.|++.-.
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr--- 403 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR--- 403 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
...|..||.+|+.++-.
T Consensus 404 ---------k~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 404 ---------KVATEKDFLDAVNKVVK 420 (435)
T ss_pred ---------hhhhHHHHHHHHHHHHH
Confidence 44788899999887643
No 20
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=329.41 Aligned_cols=251 Identities=41% Similarity=0.667 Sum_probs=233.0
Q ss_pred CCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 79 NPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 79 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
....+.++|++++|++.+|+.+++.+.+|+.+++.|... .+++++|+|||||||||||++|+++|++++.+|+.++.++
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~-~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKL-GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhc-CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 346678999999999999999999999999999998873 3678899999999999999999999999999999999999
Q ss_pred ccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 159 LMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 159 l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
+.++|+|++++.++.+|..|+...||||||||+|.+.+.+.........++.++++..++++.. ..+|++|++||+|+
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~ 389 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPD 389 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc--cCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999999887777778999999999999875 55699999999999
Q ss_pred CCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCC--CCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 239 ELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKV--EENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 239 ~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~--~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
.+|++++| ||+..+++++|+..+|.++++.++..... ..++++..+++.++||+|+||..+|++|++.++++..
T Consensus 390 ~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-- 467 (494)
T COG0464 390 DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-- 467 (494)
T ss_pred ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--
Confidence 99999999 99999999999999999999999985554 4789999999999999999999999999999999864
Q ss_pred HhcCCCCCCCCCCCHHHHHHHHHhcccch
Q 016044 315 ERKGKPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 315 ~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
...++.+||..|++..+|+.
T Consensus 468 ---------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 468 ---------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred ---------cCCccHHHHHHHHHhcCCCC
Confidence 36799999999999988873
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.5e-39 Score=341.45 Aligned_cols=259 Identities=38% Similarity=0.636 Sum_probs=232.7
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
.+.++|++|+|++.+|+.|.+.+.+|+.+++.|...+ ..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG-IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 4678999999999999999999999999999998865 678899999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC-chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL 240 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 240 (396)
+|+|++++.++.+|..|+...|+||||||+|.+++.+... ......+++++++..++++.. ..+++||+|||+|+.+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDIL 603 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhC
Confidence 9999999999999999999999999999999998877543 334567888999999999764 5679999999999999
Q ss_pred cHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016044 241 DEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKG 318 (396)
Q Consensus 241 ~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~ 318 (396)
|++++| ||+..+++++|+.++|.+||+.+.++..+..++++..+|+.|+||||+||.++|++|++.++++........
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~ 683 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKE 683 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 999998 999999999999999999999999999888899999999999999999999999999999999875432110
Q ss_pred ------CCCCCCCCCCHHHHHHHHHhcccch
Q 016044 319 ------KPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 319 ------~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
.......+|+++||..|+++++|+.
T Consensus 684 ~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 684 KLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred hhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 0112345899999999999999984
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=327.23 Aligned_cols=243 Identities=41% Similarity=0.649 Sum_probs=223.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
....++|.|+.|.+++|++|.+++.. |++|+.|...+ ...|+|+||+||||||||.||+|+|.+.|.||+.++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 45569999999999999999998876 99999999875 78899999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC----CCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR----TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~----~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
..+.|.....++.+|..|+.+.|||+||||||.+...+. ...+..-...+++++..|||+.. ...|+++++||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~--~~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET--SKGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC--CCcEEEEeccCC
Confidence 999999899999999999999999999999999998884 23444556678899999999986 477999999999
Q ss_pred CCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 016044 237 PSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313 (396)
Q Consensus 237 ~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~ 313 (396)
++.+|++++| |||+.+.++.|+..+|.+|++.+++...++ +++++..+|..|.||+|+||.++|++|+..|.++..
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~- 538 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL- 538 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc-
Confidence 9999999999 999999999999999999999999998885 778899999999999999999999999999999743
Q ss_pred HHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 314 EERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 314 ~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
..|+..||++|++++
T Consensus 539 -----------~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 539 -----------REIGTKDLEYAIERV 553 (774)
T ss_pred -----------CccchhhHHHHHHHH
Confidence 679999999999854
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.7e-39 Score=313.39 Aligned_cols=248 Identities=40% Similarity=0.671 Sum_probs=222.3
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|+++|++|+|++++++++.+.+..|+.+++.|...+ ..+|+++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 34678999999999999999999999999999998765 67889999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
.++.|+.+..++.+|..+....|+||||||+|.+++.+.... .....+.+.+++..++++.. ..+++||+|||++
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~ 280 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRI 280 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCCh
Confidence 999999999999999999999999999999999987654322 22344556677777777653 4579999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.+|++++| ||+..+++++|+.++|.+||+.++++..+..++++..++..|+||+|+||.++|++|.+.|+++.
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~---- 356 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD---- 356 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999999888888999999999999999999999999999998862
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhcccch
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
...|+.+||.+|+..+++..
T Consensus 357 --------~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 357 --------RTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred --------CCCcCHHHHHHHHHHHhccc
Confidence 25699999999999998874
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.5e-38 Score=332.12 Aligned_cols=293 Identities=35% Similarity=0.605 Sum_probs=256.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
.+.++|+||+|++.+++.+++.+.+|+.+++.|...+ +.+++++|||||||||||++|+++|++++.+++.++++++.+
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g-i~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG-IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 4679999999999999999999999999999998865 678899999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCc
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 241 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 241 (396)
++.|+.+..++.+|..+....|+||||||+|.+.+++.....+...++..+++..++++.. ...+++|++||+++.+|
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998887655455556778889999988754 56799999999999999
Q ss_pred HHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016044 242 EAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGK 319 (396)
Q Consensus 242 ~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~ 319 (396)
+++++ ||+..+.++.|+.++|.+||+.+.+...+..+.+++.++..+.||+++|+..+|+.|++.++++.........
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999999888888889999999999999999999999999999998765221110
Q ss_pred -------CCCCCCCCCHHHHHHHHHhcccchhhhhhhhccCCCCCccccCCCccHhHHHHHHHHHHHHH
Q 016044 320 -------PAAAPRPLSRLDLEKVLTTSRKTRVAATEYTLNSQSSGWSRNNESNDYQVQAAISELSRLVV 381 (396)
Q Consensus 320 -------~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~w~di~~~~~~~~~~~L~ei~~~~~ 381 (396)
.......++.+||..|++.++|+ .........|.+.|+|++|.+ +++..|.+.+.+++
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps--~~~~~~~~~~~~~~~di~g~~--~~k~~l~~~v~~~~ 473 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPS--AIREVLVEVPNVRWSDIGGLE--EVKQELREAVEWPL 473 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhcccc--ccchhhccccccchhhcccHH--HHHHHHHHHHHhhh
Confidence 11233568999999999999988 455556678899999999999 89988888744433
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3e-38 Score=307.99 Aligned_cols=246 Identities=35% Similarity=0.581 Sum_probs=220.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..|.++|+||+|++..++++++.+..|+.+++.|...+ +.+++++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g-i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG-IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 34668999999999999999999999999999998865 67889999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC---CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
.++.|+....++.+|..+....|+||||||+|.++.++.. +......+.+.+++..++++.. ..++.||+|||++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~ 332 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRI 332 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCCh
Confidence 9999999999999999999999999999999999876642 2223345566788888888754 4578999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.+|++++| ||+..|+|++|+.++|.+||+.++.+..+..++++..++..++||||+||.++|++|++.|+++..
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r--- 409 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR--- 409 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC---
Confidence 999999997 999999999999999999999999998888899999999999999999999999999999998732
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
..|+.+||..|+.++..
T Consensus 410 ---------~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 410 ---------MKVTQADFRKAKEKVLY 426 (438)
T ss_pred ---------CccCHHHHHHHHHHHHh
Confidence 56999999999998744
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.6e-37 Score=307.16 Aligned_cols=241 Identities=25% Similarity=0.388 Sum_probs=207.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..++.+|++|+|++.+|+.+.+....+. ..+... .+.+|+|+||+||||||||++|+++|++++.+++.++++.+.
T Consensus 221 ~~~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~-gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~ 296 (489)
T CHL00195 221 YSVNEKISDIGGLDNLKDWLKKRSTSFS---KQASNY-GLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF 296 (489)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc
Confidence 3457899999999999999987543221 222222 267789999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC-CCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR-TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE 239 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 239 (396)
+++.|+++..++.+|..+...+||||||||+|.++..+. .+......+++..++..++. ...+++||+|||+++.
T Consensus 297 ~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~----~~~~V~vIaTTN~~~~ 372 (489)
T CHL00195 297 GGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE----KKSPVFVVATANNIDL 372 (489)
T ss_pred ccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc----CCCceEEEEecCChhh
Confidence 999999999999999999999999999999999877543 34455667788888887764 2457999999999999
Q ss_pred CcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCC--CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 240 LDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVE--ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 240 l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~--~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+|++++| ||+..++++.|+.++|.+||+.++.+.... .+.+++.+|+.|+||||+||+++|.+|+..|+.+
T Consensus 373 Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~----- 447 (489)
T CHL00195 373 LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE----- 447 (489)
T ss_pred CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 9999998 999999999999999999999999876433 4788999999999999999999999999888754
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
.++++.+||..|++.+.|.
T Consensus 448 --------~~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 448 --------KREFTTDDILLALKQFIPL 466 (489)
T ss_pred --------CCCcCHHHHHHHHHhcCCC
Confidence 1679999999999999987
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=307.39 Aligned_cols=243 Identities=37% Similarity=0.580 Sum_probs=222.6
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
....++|.|+.|.+++|+++.+.+.. ++.|..|...+. .-|+|++|+||||||||++||++|.+.+.||++++.+++.
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV 220 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 220 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh
Confidence 45678999999999999999998875 999999988653 7799999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC---CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
..++|-....++.+|..|++++|||+||||+|.+..+|.. +.+..-+..+++++.+|||+.. +..|+++++||+|
T Consensus 221 emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRp 298 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRP 298 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCc
Confidence 9999999999999999999999999999999999888753 3444555688999999999984 6789999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+-+|++|+| ||++++.++.||...|.+|++.++++.++..++++..+|+.|.||+|+|+.+++++|+..+.++..
T Consensus 299 dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~--- 375 (596)
T COG0465 299 DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK--- 375 (596)
T ss_pred ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
..+++.||.+|..++
T Consensus 376 ---------~~i~~~~i~ea~drv 390 (596)
T COG0465 376 ---------KEITMRDIEEAIDRV 390 (596)
T ss_pred ---------eeEeccchHHHHHHH
Confidence 568888888888775
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.8e-36 Score=304.96 Aligned_cols=246 Identities=36% Similarity=0.576 Sum_probs=218.0
Q ss_pred CCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 79 NPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 79 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
.++.+.++|+||+|++++|+++.+.+.. +.+++.|...+ ..+++|+||+||||||||++|+++|++++.+|+.+++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 4457789999999999999999998775 88888887754 567899999999999999999999999999999999999
Q ss_pred ccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecC
Q 016044 159 LMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATN 235 (396)
Q Consensus 159 l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 235 (396)
+...+.|...+.++.+|..++...|+||||||+|.+..++... ......+.+++++..++++.. ..+++||+|||
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn 201 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATN 201 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecC
Confidence 9999999999999999999999999999999999998776542 234455778899999998764 45799999999
Q ss_pred CCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 016044 236 RPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313 (396)
Q Consensus 236 ~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~ 313 (396)
+++.+|++++| ||+..++++.|+.++|.+|++.+++......+.++..++..+.|||++||.++|++|+..+.++.
T Consensus 202 ~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~-- 279 (495)
T TIGR01241 202 RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN-- 279 (495)
T ss_pred ChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 99999999998 99999999999999999999999998877778899999999999999999999999988876642
Q ss_pred HHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 314 EERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 314 ~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
...|+.+||..|+....
T Consensus 280 ----------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 ----------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred ----------CCCCCHHHHHHHHHHHh
Confidence 25699999999998763
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.1e-35 Score=288.73 Aligned_cols=244 Identities=42% Similarity=0.693 Sum_probs=215.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.+.++|++|+|++++++++.+.+..|+.+++.|...+ ..+|+|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 45778999999999999999999999999999998765 67789999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
..+.|+....++.+|..+....|+||||||+|.+...+.... .....+.+.+++..++++.. ..++.||+|||++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~ 271 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRP 271 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCCh
Confidence 999999999999999999988999999999999976654321 22334455677777777643 4579999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.+|+++++ ||+..++++.|+.++|.+|++.++.+..+..++++..++..+.||+|+||.++|++|.+.|+++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~---- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE---- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999998 99999999999999999999999988888778899999999999999999999999999998862
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
...|+.+||..|++++
T Consensus 348 --------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------CCccCHHHHHHHHHHh
Confidence 1569999999999864
No 30
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=2.3e-35 Score=291.30 Aligned_cols=276 Identities=28% Similarity=0.486 Sum_probs=220.4
Q ss_pred cccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----
Q 016044 76 DVINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----- 150 (396)
Q Consensus 76 ~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----- 150 (396)
.++....|+++|++|+|+++.++++++.+.+|+.+++.|...+ +.+|+|+|||||||||||++|+++|++++.+
T Consensus 170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g-l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~ 248 (512)
T TIGR03689 170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYD-LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET 248 (512)
T ss_pred cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhcc-CCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc
Confidence 4445577899999999999999999999999999999998865 7788999999999999999999999988543
Q ss_pred -----EEEEecccccchhhchHHHHHHHHHHHHHHh----CCcEEEEccccccccCCCCC-chHHHHhhHHHHHHHhhcc
Q 016044 151 -----FINVRISNLMSKWFGDAQKLVAAVFSLAYKL----QPAIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGF 220 (396)
Q Consensus 151 -----~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~----~p~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~ 220 (396)
|+.+..+++.+++.|++++.++.+|..++.. .|+||||||+|.++.++..+ ..+...+++++|+..++++
T Consensus 249 ~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 249 GDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred CCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 6677788899999999999999999988764 68999999999998877543 2333456788999999998
Q ss_pred CcCCCCcEEEEEecCCCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcC-CCCC---------CCCCHHHHHH--
Q 016044 221 TTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKG-EKVE---------ENIDFDYLAG-- 286 (396)
Q Consensus 221 ~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~-~~~~---------~~~~l~~la~-- 286 (396)
.. ..++++|+|||+++.||++++| ||+..|+|++|+.++|.+||+.++.. .++. ...++..+++
T Consensus 329 ~~--~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~a 406 (512)
T TIGR03689 329 ES--LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRA 406 (512)
T ss_pred cc--CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHH
Confidence 64 4579999999999999999999 99999999999999999999999864 2221 1112222222
Q ss_pred ---------------------------hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 287 ---------------------------LCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 287 ---------------------------~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
.++.+||++|.++|++|...|+++.+.. ....++.+|+..|+...
T Consensus 407 v~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~--------~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 407 VDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG--------GQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc--------CCcCcCHHHHHHHHHHh
Confidence 2456899999999999999999887632 12579999999999864
Q ss_pred ccchhhhhhhhccCCCCCccccCCCc
Q 016044 340 RKTRVAATEYTLNSQSSGWSRNNESN 365 (396)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~w~di~~~~ 365 (396)
-.. ....+.......|..|.|..
T Consensus 479 ~~~---~~~~~~~~~~~~w~~~~~~~ 501 (512)
T TIGR03689 479 FRE---SEDLPNTTNPDDWARISGKK 501 (512)
T ss_pred hcc---cccCCCCCCHHHHhhhhCCC
Confidence 322 22233333345598886654
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.2e-34 Score=295.22 Aligned_cols=243 Identities=33% Similarity=0.556 Sum_probs=212.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
....++|+|++|++++++++.+.+.. ++.++.|...+ ...++|+||+||||||||++|+++|.+.+.+|+.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g-~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 44568999999999999999988765 78888887654 56789999999999999999999999999999999999998
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC---CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
..+.|.....++.+|..+....||||||||+|.+...+.. .........++.++..++++.. +.+++||++||++
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~ 331 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRV 331 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCch
Confidence 8888888888999999999999999999999999866542 2234445677888888888754 5679999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.+|++++| ||+..+.+++|+.++|.+||+.+++......++++..+|..+.||+++||.++|++|+..+.++.
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~---- 407 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK---- 407 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999998 99999999999999999999999998777788899999999999999999999999998887652
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
...|+.+||+.|+.++
T Consensus 408 --------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 --------KATITMKEIDTAIDRV 423 (638)
T ss_pred --------CCCcCHHHHHHHHHHH
Confidence 1569999999999875
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-36 Score=267.82 Aligned_cols=249 Identities=38% Similarity=0.640 Sum_probs=222.2
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 77 VINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
....+.-+++|+.++|.-.+..++++.+..|+.+|++|.+.+ +.+|.+++||||||+|||.+|+++|..+|++|+.+..
T Consensus 121 m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvg-Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s 199 (388)
T KOG0651|consen 121 MSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVG-IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS 199 (388)
T ss_pred hhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccC-CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeH
Confidence 334455578999999999999999999999999999999864 8899999999999999999999999999999999999
Q ss_pred ccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 157 SNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 157 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
+.+.+++.|++.+.++..|..|+...||+||+||||...+.+.+. ......+.+.+++.+|+++.. ..+|-+|+|
T Consensus 200 s~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~Ima 277 (388)
T KOG0651|consen 200 SALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMA 277 (388)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEe
Confidence 999999999999999999999999999999999999998877432 233445556677778888765 678999999
Q ss_pred cCCCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Q 016044 234 TNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 311 (396)
Q Consensus 234 tn~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~ 311 (396)
||+|+.|+++|+| |+++.+.+|.|+...|..|++.+.........++.+.+.+.++||.|+|+++.|.+|-+.++++.
T Consensus 278 tNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~ 357 (388)
T KOG0651|consen 278 TNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE 357 (388)
T ss_pred cCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh
Confidence 9999999999999 99999999999999999999999988888888999999999999999999999999999988764
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 312 LDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
. ..+-.+||..+..+..
T Consensus 358 ~------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 358 R------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred h------------HHHhHHHHHHHHHHHH
Confidence 3 3466889999887754
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=290.35 Aligned_cols=260 Identities=32% Similarity=0.541 Sum_probs=225.8
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEecc
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRIS 157 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~~ 157 (396)
..++|++|+|++.+++.|++.+..|+.+|+.|.+.. +.||+|+||+||||||||+.|+++|..+ ...|+.-++.
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~-itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN-ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc-cCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 468999999999999999999999999999999875 8899999999999999999999999976 3556777789
Q ss_pred cccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 158 NLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
+..++|+|+.++.++.+|..|++.+|.|+|+||||-+.+.+..........+...++.+|+|+.. .+.|+||+|||+|
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds--RgqVvvigATnRp 416 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS--RGQVVVIGATNRP 416 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC--CCceEEEcccCCc
Confidence 99999999999999999999999999999999999999998777777777889999999999986 6789999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
+.++++++| ||++.++|+.|+.+.|..|+..+-+..... ...-+..+|+.+.||.|+||+.+|.+|++.++++-.-.
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 999999999 999999999999999999999998766533 23347789999999999999999999999999874322
Q ss_pred Hh----cCCCCCCCCCCCHHHHHHHHHhcccchhh
Q 016044 315 ER----KGKPAAAPRPLSRLDLEKVLTTSRKTRVA 345 (396)
Q Consensus 315 ~~----~~~~~~~~~~i~~~d~~~al~~~~~~~~~ 345 (396)
.- ..........+...||..|+.+.-|+...
T Consensus 497 ~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 497 IYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 11 11112233448999999999998777433
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.2e-32 Score=283.72 Aligned_cols=247 Identities=37% Similarity=0.559 Sum_probs=215.3
Q ss_pred CCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 79 NPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 79 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
.+......|+++.|.+..++++.+.+.+ +..+..+...+ ...++|++|+||||||||+++++++.+++.+|+.+++++
T Consensus 143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~-~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~ 220 (644)
T PRK10733 143 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 220 (644)
T ss_pred CchhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHH
Confidence 3445567899999999999999998876 56666665433 455789999999999999999999999999999999999
Q ss_pred ccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecC
Q 016044 159 LMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATN 235 (396)
Q Consensus 159 l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 235 (396)
+...+.+.....++.+|..+....||||||||+|.+...+... ......+.+++++..++++.. +.++++|+|||
T Consensus 221 ~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN 298 (644)
T PRK10733 221 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATN 298 (644)
T ss_pred hHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecC
Confidence 9999999989999999999999999999999999998776532 233445678889999998864 56799999999
Q ss_pred CCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 016044 236 RPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLD 313 (396)
Q Consensus 236 ~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~ 313 (396)
+|+.+|++++| ||++.+.++.|+.++|.+||+.+++..++..++++..+|+.+.||||+||.++|++|+..|+++.
T Consensus 299 ~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~-- 376 (644)
T PRK10733 299 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-- 376 (644)
T ss_pred ChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 99999999998 99999999999999999999999999888888999999999999999999999999999988752
Q ss_pred HHhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 314 EERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 314 ~~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
...|+++||+.|+.++.+
T Consensus 377 ----------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 ----------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ----------CCcccHHHHHHHHHHHhc
Confidence 256899999999876643
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.98 E-value=1.2e-31 Score=287.18 Aligned_cols=202 Identities=19% Similarity=0.290 Sum_probs=168.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchh------------------------------------
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKW------------------------------------ 163 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~------------------------------------ 163 (396)
..+|+||||+||||||||++|+|+|.++++||+.++++++..++
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 57899999999999999999999999999999999999988643
Q ss_pred -----hchHHH--HHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc-CCCCcEEEEEecC
Q 016044 164 -----FGDAQK--LVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT-DQNARVMVLAATN 235 (396)
Q Consensus 164 -----~g~~~~--~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~v~vI~atn 235 (396)
.+..+. .++.+|+.|++.+||||||||||.+..+... ...+.+++..|++... ....+|+||||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~------~ltL~qLLneLDg~~~~~s~~~VIVIAATN 1780 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN------YLSLGLLVNSLSRDCERCSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc------eehHHHHHHHhccccccCCCCCEEEEEeCC
Confidence 112222 3788999999999999999999999766321 1125678888887642 2356799999999
Q ss_pred CCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHh--cCCCCCC-CCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 016044 236 RPSELDEAILR--RLPQAFEIGMPDRKERAQILKVIL--KGEKVEE-NIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310 (396)
Q Consensus 236 ~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l--~~~~~~~-~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~ 310 (396)
+|+.+|||++| ||++.|+++.|+..+|.+++..++ ++..+.. .++++.+|+.|.||||+||.++|++|+..|+++
T Consensus 1781 RPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1781 IPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred CcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999 999999999999999999888654 4444543 368999999999999999999999999999987
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 311 LLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
.. ..|+++|++.|+.+.
T Consensus 1861 ~k------------s~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1861 KK------------SIIDTNTIRSALHRQ 1877 (2281)
T ss_pred CC------------CccCHHHHHHHHHHH
Confidence 32 458899999998875
No 36
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=258.33 Aligned_cols=257 Identities=21% Similarity=0.308 Sum_probs=213.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD 202 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~ 202 (396)
...+||+|+||||||++++++|+++|.+++.++|.++.....+..+..+...|..|+.+.|+|||+-++|.+......+.
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgge 510 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGE 510 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCch
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999986655544
Q ss_pred hHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHH
Q 016044 203 HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFD 282 (396)
Q Consensus 203 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~ 282 (396)
.-.+...+..++. .+ .......++++|++++..+.+++.+++-|...|.++.|+.++|.+||+.++....+..++.+.
T Consensus 511 d~rl~~~i~~~ls-~e-~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NE-DFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cc-cccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 3333333333333 12 222235679999999999999999999888999999999999999999999999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCHHHHHHHHHhcccchhhhhhhhccCC
Q 016044 283 YLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE--------RKGKPAAAPRPLSRLDLEKVLTTSRKTRVAATEYTLNSQ 354 (396)
Q Consensus 283 ~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~--------~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~ 354 (396)
.++.++.||+.+++..++.++...+..+..+.. .++........++++||.+++.+++... +.....+..|
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~f-s~aiGAPKIP 667 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEF-SDAIGAPKIP 667 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhh-hhhcCCCCCC
Confidence 999999999999999999988555554443332 2233445668899999999999998874 5566677899
Q ss_pred CCCccccCCCccHhHHHHHHHHHHHHHHHH
Q 016044 355 SSGWSRNNESNDYQVQAAISELSRLVVSQI 384 (396)
Q Consensus 355 ~~~w~di~~~~~~~~~~~L~ei~~~~~~~~ 384 (396)
+|.|+||||++ ++|++|.|++++|++|.
T Consensus 668 nV~WdDVGGLe--evK~eIldTIqlPL~hp 695 (953)
T KOG0736|consen 668 NVSWDDVGGLE--EVKTEILDTIQLPLKHP 695 (953)
T ss_pred ccchhcccCHH--HHHHHHHHHhcCcccCh
Confidence 99999999999 99999999965555443
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=9.4e-31 Score=243.81 Aligned_cols=219 Identities=20% Similarity=0.272 Sum_probs=170.2
Q ss_pred Ccccccc-cChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch
Q 016044 84 DVEFESI-GGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK 162 (396)
Q Consensus 84 ~~~~~~i-~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~ 162 (396)
..+|+++ +|+.-.+.-+.+.+....++ |-....+++|.+++||||||||||++|+++|+++|++++.++++++.++
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn---~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKN---FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhh---hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 3577887 66666666665554332221 1111236889999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHh-----CCcEEEEccccccccCCCCCchHHHHhhH-HHHHHHhhcc----------CcCCCC
Q 016044 163 WFGDAQKLVAAVFSLAYKL-----QPAIIFIDEVDSFLGQRRTSDHEALTNMK-TEFMALWDGF----------TTDQNA 226 (396)
Q Consensus 163 ~~g~~~~~~~~~f~~a~~~-----~p~vl~iDEid~l~~~~~~~~~~~~~~~~-~~ll~~l~~~----------~~~~~~ 226 (396)
|.|++++.++.+|..|... +||||||||||.+++.+.........+++ .+|+.++|+. ..+...
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 9999999999999999753 69999999999999988755555545554 6899888863 123456
Q ss_pred cEEEEEecCCCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCC----CcHHHHHHHH
Q 016044 227 RVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEG----FTGSDLLEVC 300 (396)
Q Consensus 227 ~v~vI~atn~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g----~s~~di~~l~ 300 (396)
+|+||+|||+|+.||++|+| ||+..+ ..|+.++|.+||+.+++...+. ..++..|+..+.| |.|+--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 79999999999999999999 998864 5899999999999999987664 4667777777766 4555444455
Q ss_pred HHHHHHHH
Q 016044 301 KQAAYFSI 308 (396)
Q Consensus 301 ~~A~~~a~ 308 (396)
+++...-+
T Consensus 345 d~~v~~~i 352 (413)
T PLN00020 345 DDEVRKWI 352 (413)
T ss_pred HHHHHHHH
Confidence 55444433
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-31 Score=255.86 Aligned_cols=298 Identities=30% Similarity=0.438 Sum_probs=229.2
Q ss_pred CCccccc--ccChHHHHHHHH-HHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-EEEEeccc
Q 016044 83 IDVEFES--IGGLETIKQALY-ELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV-FINVRISN 158 (396)
Q Consensus 83 ~~~~~~~--i~G~~~~k~~l~-~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~-~~~i~~~~ 158 (396)
|+.+|++ |+|++.--..+- +....-.--|+...+.+ ...-+|+|||||||||||.+||.|.+-+++. --.+++++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lG-i~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLG-IKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcC-ccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 3556766 689888666554 34443344456655554 6778999999999999999999999988753 34589999
Q ss_pred ccchhhchHHHHHHHHHHHHHHhC--------CcEEEEccccccccCCCCCc--hHHHHhhHHHHHHHhhccCcCCCCcE
Q 016044 159 LMSKWFGDAQKLVAAVFSLAYKLQ--------PAIIFIDEVDSFLGQRRTSD--HEALTNMKTEFMALWDGFTTDQNARV 228 (396)
Q Consensus 159 l~~~~~g~~~~~~~~~f~~a~~~~--------p~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~v 228 (396)
++++|+|+++.+++.+|..|.... =-||++||||.++.+|.+.. ......+.++++..+||..+ -.++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq--LNNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ--LNNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh--hhcE
Confidence 999999999999999999885431 14999999999998886433 45667789999999999876 4579
Q ss_pred EEEEecCCCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCC----CCCCCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 229 MVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGE----KVEENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 229 ~vI~atn~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~----~~~~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
+||+-||+++.+|+||+| ||...+++.+||+..|.+|++.+.+++ .+..++|+++||..|..|||++|+.+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999999 999999999999999999999887643 35689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC---CCCCCCCCCCHHHHHHHHHhcccchhhhhh-hhcc--CCCCCccccCCCccHhHHHHHHHH
Q 016044 303 AAYFSIRELLDEERKG---KPAAAPRPLSRLDLEKVLTTSRKTRVAATE-YTLN--SQSSGWSRNNESNDYQVQAAISEL 376 (396)
Q Consensus 303 A~~~a~~~~~~~~~~~---~~~~~~~~i~~~d~~~al~~~~~~~~~~~~-~~~~--~~~~~w~di~~~~~~~~~~~L~ei 376 (396)
|...|+.|.++..... ........|+++||..||..++|..-...+ .... ..-+-|.+ -...+.+=
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~--------~v~~il~~ 522 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGP--------PVTRILDD 522 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecc--------cHHHHHhh
Confidence 9999999998765221 122344679999999999999998522222 2221 22244542 22334444
Q ss_pred HHHHHHHHhccCCCC
Q 016044 377 SRLVVSQIMNIQSEP 391 (396)
Q Consensus 377 ~~~~~~~~~~~~~~~ 391 (396)
-.++++++.++-+.|
T Consensus 523 G~llv~qvk~s~~s~ 537 (744)
T KOG0741|consen 523 GKLLVQQVKNSERSP 537 (744)
T ss_pred HHHHHHHhhccccCc
Confidence 556666676665554
No 39
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-27 Score=234.34 Aligned_cols=277 Identities=21% Similarity=0.257 Sum_probs=219.5
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEecccccchh
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRISNLMSKW 163 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~~~l~~~~ 163 (396)
.|++-....|++..+....| .-.+.++||+||+|||||.|+++++.+. .+++..++|+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp------------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP------------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhccc------------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh
Confidence 55666667777665533332 1224679999999999999999999976 4677889999999988
Q ss_pred hchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC--CCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCc
Q 016044 164 FGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR--TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 241 (396)
Q Consensus 164 ~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 241 (396)
....++.+..+|..+.+++|+||++|++|.+.+... ++........+..++..+-......+..+.+|++.+....++
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 888999999999999999999999999999987332 222333334444555443333334566789999999999999
Q ss_pred HHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016044 242 EAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKG 318 (396)
Q Consensus 242 ~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~ 318 (396)
+.|.+ +|..++.++.|+..+|.+||++.+.+.... ...|++-++..|+||...|+..++++|...++.+.+...
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~--- 632 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNG--- 632 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccC---
Confidence 98887 788899999999999999999999765533 233566699999999999999999999999995544221
Q ss_pred CCCCCCCCCCHHHHHHHHHhcccchhhhhhhhccCCC-CCccccCCCccHhHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 016044 319 KPAAAPRPLSRLDLEKVLTTSRKTRVAATEYTLNSQS-SGWSRNNESNDYQVQAAISELSRLVVSQIMNIQSEPDTQD 395 (396)
Q Consensus 319 ~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~-~~w~di~~~~~~~~~~~L~ei~~~~~~~~~~~~~~~~~~~ 395 (396)
..-++.++|.++|+.+-|. +.+.+....+. .+|+|+||.. ++++.|+|+ ++||.+||.+|.
T Consensus 633 -----~klltke~f~ksL~~F~P~--aLR~ik~~k~tgi~w~digg~~--~~k~~l~~~-------i~~P~kyp~if~ 694 (952)
T KOG0735|consen 633 -----PKLLTKELFEKSLKDFVPL--ALRGIKLVKSTGIRWEDIGGLF--EAKKVLEEV-------IEWPSKYPQIFA 694 (952)
T ss_pred -----cccchHHHHHHHHHhcChH--HhhhccccccCCCCceecccHH--HHHHHHHHH-------HhccccchHHHh
Confidence 1369999999999999888 67777766444 9999999999 888888888 899999999884
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.92 E-value=9.1e-24 Score=197.38 Aligned_cols=236 Identities=18% Similarity=0.214 Sum_probs=166.2
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCC--CCceEEEECCCCCcHHHHHHHHHHHc-------CCcEEEEeccc
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLG--PQKGVLLYGPPGTGKTMLAKAIAKES-------GAVFINVRISN 158 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~--~~~~vLL~GppGtGKT~la~ala~~~-------~~~~~~i~~~~ 158 (396)
++++|++++|+++.+++.+ +..+......+... ++.+++|+||||||||++|+++|..+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999998876 33444444433222 23458999999999999999998864 23689999999
Q ss_pred ccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 159 LMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 159 l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
+.+.+.|++......++..+ .++||||||+|.+...+... .........++..++.. ..+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~--~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNER--DYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCCcc--chHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 99999988777777777665 45899999999986543221 22344555667767642 34578888876422
Q ss_pred -----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCC-CCCHHHHHH----h--CCCCc-HHHHHHHHHHHHH
Q 016044 239 -----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEE-NIDFDYLAG----L--CEGFT-GSDLLEVCKQAAY 305 (396)
Q Consensus 239 -----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~-~~~l~~la~----~--~~g~s-~~di~~l~~~A~~ 305 (396)
.++|++++||+..+.|++++.+++.+|++.++.+....- +-....+.. . ...|. +++++++++.|..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 346999999999999999999999999999997654331 111222222 2 23455 7899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCHHHHH
Q 016044 306 FSIRELLDEERKGKPAAAPRPLSRLDLE 333 (396)
Q Consensus 306 ~a~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (396)
....|+...............++.+|+.
T Consensus 253 ~~~~r~~~~~~~~~~~~~l~~~~~~d~~ 280 (287)
T CHL00181 253 RQANRIFESGGRVLTKADLVTIEAEDIL 280 (287)
T ss_pred HHHHHHHcCCCCCCCHHHHhCCCHHHHh
Confidence 9888887653322222334456666654
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.90 E-value=1e-22 Score=190.43 Aligned_cols=236 Identities=17% Similarity=0.209 Sum_probs=165.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCC--CCCceEEEECCCCCcHHHHHHHHHHHcC-------CcEEEEecccc
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLL--GPQKGVLLYGPPGTGKTMLAKAIAKESG-------AVFINVRISNL 159 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~--~~~~~vLL~GppGtGKT~la~ala~~~~-------~~~~~i~~~~l 159 (396)
+++|++++|+++.+++.+ +..++.+...+.. .+..+++|+||||||||++|++++..+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998887 4455555443322 2445899999999999999999988652 37999999999
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC--
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP-- 237 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~-- 237 (396)
.+.+.|++...+..+|..+ .+++|||||++.+.+.+... .........++..++.. ..++++|++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~--~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDNER--DYGQEAIEILLQVMENQ----RDDLVVILAGYKDRM 172 (284)
T ss_pred hHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCCcc--chHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHH
Confidence 8888888877777777765 45899999999986443221 22234455667767642 3567888887643
Q ss_pred C---CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCC-CCHHHHHHhC------CCC-cHHHHHHHHHHHHHH
Q 016044 238 S---ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEEN-IDFDYLAGLC------EGF-TGSDLLEVCKQAAYF 306 (396)
Q Consensus 238 ~---~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~-~~l~~la~~~------~g~-s~~di~~l~~~A~~~ 306 (396)
+ .+++++.+||+..+.||+++.+++..|++.+++.....-+ -....+.... +.+ ++++++++++.+...
T Consensus 173 ~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 173 DSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 2 2489999999999999999999999999999987543311 1123333321 222 467999999999988
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHH
Q 016044 307 SIRELLDEERKGKPAAAPRPLSRLDLEK 334 (396)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (396)
...|+...............|+.+|+..
T Consensus 253 ~~~r~~~~~~~~~~~~~~~~~~~~d~~~ 280 (284)
T TIGR02880 253 QANRLFCDLDRVLDKSDLETIDPEDLLA 280 (284)
T ss_pred HHHHHhcCcCCCCCHHHHhCCCHHHHhh
Confidence 8888765432221222335566666543
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.90 E-value=1.5e-22 Score=187.82 Aligned_cols=219 Identities=17% Similarity=0.194 Sum_probs=156.6
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCC-CCCCceEEEECCCCCcHHHHHHHHHHHc-------CCcEEEEecc
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKL-LGPQKGVLLYGPPGTGKTMLAKAIAKES-------GAVFINVRIS 157 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~~-------~~~~~~i~~~ 157 (396)
.+++++|++++|+.+++++.++.........+.. .....+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 4678999999999999998886555444433321 2234679999999999999999999864 2478899999
Q ss_pred cccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 158 NLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
++.+.+.|+....+..+|..+. ++||||||+|.|...... ......+..++..++.. ..++++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~~---~~~~~~i~~Ll~~~e~~----~~~~~vila~~~~ 153 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGEK---DFGKEAIDTLVKGMEDN----RNEFVLILAGYSD 153 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCcc---chHHHHHHHHHHHHhcc----CCCEEEEecCCcc
Confidence 9999999999888888887663 589999999998642211 11233445666666543 3456666665432
Q ss_pred C-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhC-------C--CCcHHHHHHHHHH
Q 016044 238 S-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLC-------E--GFTGSDLLEVCKQ 302 (396)
Q Consensus 238 ~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~-------~--g~s~~di~~l~~~ 302 (396)
+ .+++++++||+..+.|+.++.+++.+|++.++...... ++-.+..++... . .-+++.++++++.
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 2 36789999998899999999999999999999765433 111233443221 1 2356788899988
Q ss_pred HHHHHHHHHHHH
Q 016044 303 AAYFSIRELLDE 314 (396)
Q Consensus 303 A~~~a~~~~~~~ 314 (396)
|......+++..
T Consensus 234 a~~~~~~r~~~~ 245 (261)
T TIGR02881 234 AIRRQAVRLLDK 245 (261)
T ss_pred HHHHHHHHHhcc
Confidence 888777776543
No 43
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4e-22 Score=201.47 Aligned_cols=262 Identities=31% Similarity=0.476 Sum_probs=229.7
Q ss_pred cccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEE
Q 016044 107 PLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAII 186 (396)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl 186 (396)
|+.+++.+.... ..++++++++||||+|||+++++++.+ +..+..++.+...+++.++++......|..+....|+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 3 PLKEPELFKKLG-IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CccCHHHHHHhC-CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 456677777654 778899999999999999999999999 777788999999999999999999999999999999999
Q ss_pred EEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHh--ccCCceEeCCCCHHHHHH
Q 016044 187 FIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQ 264 (396)
Q Consensus 187 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~~~~P~~~er~~ 264 (396)
++||+|.+.+.+.........++..+++..++++. ... +++++.+|++..+++++++ ||+..+.++.|+...+.+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 99999999998877566677788899999999988 345 8899999999999999998 999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcccchh
Q 016044 265 ILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRKTRV 344 (396)
Q Consensus 265 il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~ 344 (396)
++...........+.+...++..+.|++++++..+|.++...++++.. ........++.+|+.++++.+.++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------~~~~~~~~~~~~~~~~~l~~~~~~-- 229 (494)
T COG0464 158 ILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------DLVGEYIGVTEDDFEEALKKVLPS-- 229 (494)
T ss_pred HHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------ccCcccccccHHHHHHHHHhcCcc--
Confidence 999999888887788999999999999999999999999999998864 112233668999999999999886
Q ss_pred hhhhhhccCCCCCccccCCCccHhHHHHHHHHHHHHHHHHh
Q 016044 345 AATEYTLNSQSSGWSRNNESNDYQVQAAISELSRLVVSQIM 385 (396)
Q Consensus 345 ~~~~~~~~~~~~~w~di~~~~~~~~~~~L~ei~~~~~~~~~ 385 (396)
.......+.++|+|+||++ +++..+.|++.++..+.+
T Consensus 230 --~~~~~~~~~v~~~diggl~--~~k~~l~e~v~~~~~~~e 266 (494)
T COG0464 230 --RGVLFEDEDVTLDDIGGLE--EAKEELKEAIETPLKRPE 266 (494)
T ss_pred --cccccCCCCcceehhhcHH--HHHHHHHHHHHhHhhChH
Confidence 4556678999999999998 899999999666666555
No 44
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=8.8e-23 Score=184.82 Aligned_cols=237 Identities=26% Similarity=0.340 Sum_probs=175.3
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---------CcEEEEec
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---------AVFINVRI 156 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---------~~~~~i~~ 156 (396)
-|+.++--..+|+++..++...+...+.-....++...+-+||+||||||||+|++++|+.+. ...+++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 466677777889999888776655444433445566778899999999999999999999763 45789999
Q ss_pred ccccchhhchHHHHHHHHHHHHHHh---CCc--EEEEccccccccCCC----CCchHHHHhhHHHHHHHhhccCcCCCCc
Q 016044 157 SNLMSKWFGDAQKLVAAVFSLAYKL---QPA--IIFIDEVDSFLGQRR----TSDHEALTNMKTEFMALWDGFTTDQNAR 227 (396)
Q Consensus 157 ~~l~~~~~g~~~~~~~~~f~~a~~~---~p~--vl~iDEid~l~~~~~----~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 227 (396)
..++++|++++.+.+..+|+..... ..+ .++|||++++...|. .++....-|+.+.++.++|.+.. ..+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~--~~N 297 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR--YPN 297 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc--CCC
Confidence 9999999999999999999987654 222 556999999976552 23333456789999999999876 567
Q ss_pred EEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCC-----CCCC-------------CCHHHHHHh-C
Q 016044 228 VMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEK-----VEEN-------------IDFDYLAGL-C 288 (396)
Q Consensus 228 v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~-----~~~~-------------~~l~~la~~-~ 288 (396)
|++++|+|-.+.+|.|+.+|-|.+.++++|+...|.+|++.++.... .... .....+... +
T Consensus 298 vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998774211 1100 111222333 3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHh
Q 016044 289 EGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTT 338 (396)
Q Consensus 289 ~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 338 (396)
.|.||+-|+.|=--| ..+. ....+++.++|..|+..
T Consensus 378 ~gLSGRtlrkLP~La----ha~y----------~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLA----HAEY----------FRTFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHH----HHhc----------cCCCccChHHHHHHHHH
Confidence 678887777653222 1111 22367899999888754
No 45
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.8e-22 Score=182.91 Aligned_cols=208 Identities=27% Similarity=0.457 Sum_probs=156.7
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchh
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKW 163 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~ 163 (396)
...|++++-...+.+.|+++....- +... ...|-++||||||||||||++|+-+|...|..|-.+.+.++.-.
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTa-NTK~-----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl- 423 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATA-NTKK-----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL- 423 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhc-cccc-----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-
Confidence 4568899999999999988776421 1111 13456899999999999999999999999999988877765332
Q ss_pred hchHHHHHHHHHHHHHHhCC-cEEEEccccccccCCCCC-chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCc
Q 016044 164 FGDAQKLVAAVFSLAYKLQP-AIIFIDEVDSFLGQRRTS-DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 241 (396)
Q Consensus 164 ~g~~~~~~~~~f~~a~~~~p-~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 241 (396)
-.+.-..+..+|+-+.+... -+|||||.|.++..+... ..+..+..++.|+-- .| +...+++++.+||+|+++|
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR-TG---dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TG---DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH-hc---ccccceEEEeccCCccchh
Confidence 12334567889999987654 478899999998777543 344444455554432 12 2356799999999999999
Q ss_pred HHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCC-----------------------CCC----HHHHHHhCCCCcHH
Q 016044 242 EAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEE-----------------------NID----FDYLAGLCEGFTGS 294 (396)
Q Consensus 242 ~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~-----------------------~~~----l~~la~~~~g~s~~ 294 (396)
.++-+|++..++||+|..+||..+|..++.++.... +.+ +.+.|+.|+||||+
T Consensus 500 sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 500 SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 999999999999999999999999999886433210 111 46678999999999
Q ss_pred HHHHHHHH
Q 016044 295 DLLEVCKQ 302 (396)
Q Consensus 295 di~~l~~~ 302 (396)
+|..|+..
T Consensus 580 EiakLva~ 587 (630)
T KOG0742|consen 580 EIAKLVAS 587 (630)
T ss_pred HHHHHHHH
Confidence 99998743
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=1.8e-21 Score=161.24 Aligned_cols=130 Identities=36% Similarity=0.627 Sum_probs=115.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhC-CcEEEEccccccccCCCCCchH
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQ-PAIIFIDEVDSFLGQRRTSDHE 204 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~-p~vl~iDEid~l~~~~~~~~~~ 204 (396)
|||+||||||||++|+.+|+.++.+++.++++.+.+.+.+...+.+..+|..+.... |+||||||+|.+..........
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998889999999999999998887 9999999999998887445555
Q ss_pred HHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHH-hccCCceEeCC
Q 016044 205 ALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAIL-RRLPQAFEIGM 256 (396)
Q Consensus 205 ~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~-~R~~~~i~~~~ 256 (396)
........++..++..... ..++++|++||.++.++++++ +||+..+++|.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 6667778888888877643 467999999999999999999 99999998873
No 47
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.6e-20 Score=176.08 Aligned_cols=222 Identities=19% Similarity=0.292 Sum_probs=168.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
++| .+|+.++--.+.|+.|.+-+..+++..+-|.+-+ ..+.+|.|||||||||||+++.|+|+.++..++.++.++..
T Consensus 195 ~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvG-kawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~ 272 (457)
T KOG0743|consen 195 PHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVG-KAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK 272 (457)
T ss_pred CCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcC-cchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc
Confidence 344 8999999999999999999999999999998854 67789999999999999999999999999999988877654
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC--CC----chH-HHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR--TS----DHE-ALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~--~~----~~~-~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
.. .+ ++.++.... ..+||+|.|||+-+..+. .. ... ...-.+..|++.+||+.+....--++|+|
T Consensus 273 ~n----~d--Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 273 LD----SD--LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred Cc----HH--HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 32 22 455444332 348999999999643221 11 110 11123567999999999877777889999
Q ss_pred cCCCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCC--CcHHHHHHH-HHH--HHHH
Q 016044 234 TNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEG--FTGSDLLEV-CKQ--AAYF 306 (396)
Q Consensus 234 tn~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g--~s~~di~~l-~~~--A~~~ 306 (396)
||.++.|||||+| |+|..|+++..+...-+.+++.++.... +..-..++.+..++ .||+|+... ... .+..
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~ 422 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADV 422 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHH
Confidence 9999999999999 9999999999999999999999997533 12224445444443 599998753 222 4556
Q ss_pred HHHHHHHH
Q 016044 307 SIRELLDE 314 (396)
Q Consensus 307 a~~~~~~~ 314 (396)
+++++++.
T Consensus 423 ~lk~Lv~~ 430 (457)
T KOG0743|consen 423 ALKGLVEA 430 (457)
T ss_pred HHHHHHHH
Confidence 66666543
No 48
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=5.4e-21 Score=167.92 Aligned_cols=190 Identities=23% Similarity=0.303 Sum_probs=119.9
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchh
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKW 163 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~ 163 (396)
+.+|+|++|+++++..+.-++.....+ -.+..+++||||||+||||+|+.+|++++.+|...+++.+...
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~- 89 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA- 89 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC-
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH-
Confidence 568999999999999987665432111 1124679999999999999999999999999998887654221
Q ss_pred hchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc-----C---------CCCcEE
Q 016044 164 FGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT-----D---------QNARVM 229 (396)
Q Consensus 164 ~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~---------~~~~v~ 229 (396)
++ +..++... ....||||||||++....+ ..|+..|+.... . +-.++.
T Consensus 90 -~d----l~~il~~l--~~~~ILFIDEIHRlnk~~q-----------e~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 90 -GD----LAAILTNL--KEGDILFIDEIHRLNKAQQ-----------EILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -HH----HHHHHHT----TT-EEEECTCCC--HHHH-----------HHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -HH----HHHHHHhc--CCCcEEEEechhhccHHHH-----------HHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11 22222222 2457999999999833221 133444432211 0 013688
Q ss_pred EEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 230 VLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 230 vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
+|+||++...+..++++||.....+..++.++..+|++.......+. .+....++|..+.| +|+--..+++.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 99999999999999999998778999999999999999888766655 23336789999998 66655555443
No 49
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.82 E-value=2e-19 Score=181.86 Aligned_cols=269 Identities=19% Similarity=0.275 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCChHHHHHHHHhHHHHhHHhCCCCCCCCccchhhhccccCCCCCCcccccccChHHHHHH
Q 016044 20 YAASAALSCLVLFAGLRHLDPNREASKKALEHKKEISKRLGRPLIQTNPYEDVIACDVINPDHIDVEFESIGGLETIKQA 99 (396)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~ 99 (396)
..+..+....++|+.++....++-..++...++-+..+++..-.+ ..++.+ ...+.+|++++|++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~~rp~~f~~iiGqs~~i~~ 76 (531)
T TIGR02902 7 QIIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRL-TEPLSE---------KTRPKSFDEIIGQEEGIKA 76 (531)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhh-cchHHH---------hhCcCCHHHeeCcHHHHHH
Confidence 334445556667777777666554444444444334444321111 111222 2345789999999999999
Q ss_pred HHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEEecccc-------cch
Q 016044 100 LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFINVRISNL-------MSK 162 (396)
Q Consensus 100 l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~i~~~~l-------~~~ 162 (396)
++..+. ...+.++||+||||||||++|+++++.+ +.+|+.++|... ...
T Consensus 77 l~~al~--------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~ 142 (531)
T TIGR02902 77 LKAALC--------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADP 142 (531)
T ss_pred HHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchh
Confidence 875432 1225789999999999999999998642 368999998642 111
Q ss_pred hhchHHH-HHH--HHH----------HHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc---------
Q 016044 163 WFGDAQK-LVA--AVF----------SLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF--------- 220 (396)
Q Consensus 163 ~~g~~~~-~~~--~~f----------~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~--------- 220 (396)
.++.... ... ..| ........++|||||++.|....+ . .++..++..
T Consensus 143 li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q----~-------~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 143 LIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQM----N-------KLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred hcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHH----H-------HHHHHHHhCeeeeccccc
Confidence 1111000 000 000 011223458999999999843321 1 222222110
Q ss_pred ---------------CcCCCCcEEEEE-ecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHH
Q 016044 221 ---------------TTDQNARVMVLA-ATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDY 283 (396)
Q Consensus 221 ---------------~~~~~~~v~vI~-atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~ 283 (396)
....+.++.+|+ |++.++.+++++++|| ..+.|++++.+++.++++..+++.... ++..++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~ 290 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALEL 290 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 001123455555 4567999999999999 788999999999999999999876543 2222555
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHh
Q 016044 284 LAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTT 338 (396)
Q Consensus 284 la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 338 (396)
++..+ ++++++.++++.|+..+..+. ...|+.+|++.++..
T Consensus 291 I~~y~--~n~Rel~nll~~Aa~~A~~~~------------~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 291 IVKYA--SNGREAVNIVQLAAGIALGEG------------RKRILAEDIEWVAEN 331 (531)
T ss_pred HHHhh--hhHHHHHHHHHHHHHHHhhCC------------CcEEcHHHHHHHhCC
Confidence 66554 378999999999887665431 146999999999863
No 50
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.82 E-value=2.5e-19 Score=188.22 Aligned_cols=224 Identities=23% Similarity=0.309 Sum_probs=156.8
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
+-.+++++|.++....+.+.+.. +...+++|+||||||||++|+++|..+ +..++.
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 35788999999998887655431 124689999999999999999999986 778999
Q ss_pred Eeccccc--chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCch-HHHHhhHHHHHHHhhccCcCCCCcEEE
Q 016044 154 VRISNLM--SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH-EALTNMKTEFMALWDGFTTDQNARVMV 230 (396)
Q Consensus 154 i~~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~v~v 230 (396)
++++.+. .++.|+.+..++.+|..+....++||||||+|.+.+....... ..... .+...+. ++.+.+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~---~L~~~l~------~g~i~~ 314 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASN---LLKPALS------SGKLRC 314 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHH---HHHHHHh------CCCeEE
Confidence 9988887 4788999999999999988777899999999999866432211 11111 2222222 467899
Q ss_pred EEecCCC-----CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHhCCCCcHH-----H
Q 016044 231 LAATNRP-----SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-----ENIDFDYLAGLCEGFTGS-----D 295 (396)
Q Consensus 231 I~atn~~-----~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-----~~~~l~~la~~~~g~s~~-----d 295 (396)
|++||.. ...|+++.||| ..+.++.|+.+++.+|++.....+... .+-.+..++..+..|-+. -
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 9999963 35799999999 589999999999999999776542211 222355566666655433 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 296 LLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 296 i~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
--.++++|+....-+ ........|+.+|+..++...
T Consensus 394 ai~lld~a~a~~~~~--------~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 394 AIDVIDEAGASFRLR--------PKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHHhhhhhhcC--------cccccccccCHHHHHHHHHHH
Confidence 233444443211100 000123569999999999875
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1e-18 Score=163.52 Aligned_cols=168 Identities=28% Similarity=0.446 Sum_probs=122.9
Q ss_pred CcccccccChHHHHH---HHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 84 DVEFESIGGLETIKQ---ALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~---~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.++++++|++.+.- -|++.+. .+ ...+++|||||||||||+|+.||...+.+|..++....
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~----------~~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~- 84 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE----------AG----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS- 84 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh----------cC----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-
Confidence 568999999998863 3444443 12 24779999999999999999999999999999986443
Q ss_pred chhhchHHHHHHHHHHHHHHhC----CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec--
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQ----PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT-- 234 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~----p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at-- 234 (396)
+-+-++.+++.++... ..|||+||||++....+. .|+-.++ ++.+++||+|
T Consensus 85 ------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD-----------~lLp~vE------~G~iilIGATTE 141 (436)
T COG2256 85 ------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQD-----------ALLPHVE------NGTIILIGATTE 141 (436)
T ss_pred ------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhh-----------hhhhhhc------CCeEEEEeccCC
Confidence 3455777888775432 479999999998544332 3333333 5678888877
Q ss_pred CCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhc--CCCCC------CCCCHHHHHHhCCC
Q 016044 235 NRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILK--GEKVE------ENIDFDYLAGLCEG 290 (396)
Q Consensus 235 n~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~--~~~~~------~~~~l~~la~~~~g 290 (396)
|+...+.+++++|+ .++.+.+.+.++..++++..+. ...+. ++-..+.++..+.|
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 55668999999999 9999999999999999998442 22222 11225566776665
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.81 E-value=8.6e-19 Score=166.55 Aligned_cols=220 Identities=23% Similarity=0.212 Sum_probs=143.4
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhc
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFG 165 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g 165 (396)
+|++++|++++++.|..++...... ...+.+++|+||||||||++|+++|++++..+....++..... +
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~--~ 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP--G 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc--h
Confidence 6999999999999998877532111 1235679999999999999999999999988766654432211 1
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHH--hhc-cC----cCCCCcEEEEEecCCCC
Q 016044 166 DAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMAL--WDG-FT----TDQNARVMVLAATNRPS 238 (396)
Q Consensus 166 ~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~--l~~-~~----~~~~~~v~vI~atn~~~ 238 (396)
. +...+.. ...+.+|||||+|.+.... .+.+..++...... ++. .. .....++.+|++||++.
T Consensus 71 ~----l~~~l~~--~~~~~vl~iDEi~~l~~~~----~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~ 140 (305)
T TIGR00635 71 D----LAAILTN--LEEGDVLFIDEIHRLSPAV----EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG 140 (305)
T ss_pred h----HHHHHHh--cccCCEEEEehHhhhCHHH----HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc
Confidence 1 1111221 1246899999999985432 11111111111000 000 00 00123478999999999
Q ss_pred CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016044 239 ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERK 317 (396)
Q Consensus 239 ~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~ 317 (396)
.+++++++||...+.+++|+.+++.++++..+...... ++-.++.+++.+.|.. +.+..+++.++..+...
T Consensus 141 ~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~------- 212 (305)
T TIGR00635 141 MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVR------- 212 (305)
T ss_pred ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHc-------
Confidence 99999999998888999999999999999888754443 2223678889888854 66677777665443221
Q ss_pred CCCCCCCCCCCHHHHHHHHHhc
Q 016044 318 GKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 318 ~~~~~~~~~i~~~d~~~al~~~ 339 (396)
....++.+++..++..+
T Consensus 213 -----~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 213 -----GQKIINRDIALKALEML 229 (305)
T ss_pred -----CCCCcCHHHHHHHHHHh
Confidence 01346777777777653
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.81 E-value=1.1e-18 Score=167.25 Aligned_cols=218 Identities=21% Similarity=0.202 Sum_probs=150.1
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK 162 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~ 162 (396)
.+.+|++++|+++.++.+...+..... . -.++.+++|+||||||||++|+++|++++..+...+.+.+...
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~------~---~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~ 90 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKK------R---GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP 90 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHh------c---CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence 356899999999999999877753111 0 1245789999999999999999999999988877665543211
Q ss_pred hhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-----c---------CCCCcE
Q 016044 163 WFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-----T---------DQNARV 228 (396)
Q Consensus 163 ~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~---------~~~~~v 228 (396)
..+..++... ..+++|||||+|.+.... .+. +...++... . ..-.++
T Consensus 91 ------~~l~~~l~~l--~~~~vl~IDEi~~l~~~~----~e~-------l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 91 ------GDLAAILTNL--EEGDVLFIDEIHRLSPVV----EEI-------LYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred ------HHHHHHHHhc--ccCCEEEEecHhhcchHH----HHH-------HHHHHHhcceeeeeccCccccceeecCCCc
Confidence 1222233222 346899999999984321 111 122222110 0 011347
Q ss_pred EEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 016044 229 MVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFS 307 (396)
Q Consensus 229 ~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a 307 (396)
.+|++||++..+++++++||...+.+++|+.+++.++++..+...... ++-.+..+++.+.|. ++.+..+++.+...+
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~~~a 230 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVRDFA 230 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHHHHH
Confidence 899999999999999999998889999999999999999988765544 222367889999884 467777777665544
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 308 IRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
..+ ....|+.+++..++..+..
T Consensus 231 ~~~------------~~~~I~~~~v~~~l~~~~~ 252 (328)
T PRK00080 231 QVK------------GDGVITKEIADKALDMLGV 252 (328)
T ss_pred HHc------------CCCCCCHHHHHHHHHHhCC
Confidence 432 1145777777777766543
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.80 E-value=6.1e-19 Score=186.25 Aligned_cols=234 Identities=20% Similarity=0.274 Sum_probs=150.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc--------
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM-------- 160 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~-------- 160 (396)
+++|++++|+.+.+++..+.... ......++|+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~--------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG--------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 58999999999988776432111 11234799999999999999999999999999999875442
Q ss_pred -chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhc-----cC------cCCCCcE
Q 016044 161 -SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDG-----FT------TDQNARV 228 (396)
Q Consensus 161 -~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~-----~~------~~~~~~v 228 (396)
..|.|.....+...|..+.... .|+||||||.+.+..+.... +.|+..++. +. ..+..++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~-~villDEidk~~~~~~~~~~-------~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKN-PLFLLDEIDKIGSSFRGDPA-------SALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCC-CEEEEechhhcCCccCCCHH-------HHHHHhcCHHhcCccccccCCceeccCCE
Confidence 2355555555666666665544 48999999999764332221 233333331 10 0112578
Q ss_pred EEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhc-----CCCCC---CCCC---HHHHHH-hCCCCcHHHH
Q 016044 229 MVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILK-----GEKVE---ENID---FDYLAG-LCEGFTGSDL 296 (396)
Q Consensus 229 ~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~-----~~~~~---~~~~---l~~la~-~~~g~s~~di 296 (396)
++|+|||..+.+++++++|| ..+.|+.|+.+++.+|++.++. ...+. -.++ +..+++ .+..+..++|
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l 543 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNL 543 (775)
T ss_pred EEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHH
Confidence 99999999999999999999 6899999999999999988762 12221 1123 334443 2223334466
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 297 LEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 297 ~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
+..+......+..++...........-...++.++++..+..-
T Consensus 544 ~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~ 586 (775)
T TIGR00763 544 ERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKP 586 (775)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCcc
Confidence 6655555544444433211100001122578899988887643
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.3e-18 Score=155.87 Aligned_cols=192 Identities=22% Similarity=0.241 Sum_probs=138.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
..+..|++++|++++|..|.-++.....+.+ ..-++||+||||.||||||..+|+++|.++-..+++.+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e---------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGE---------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcCC---------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 3467899999999999999877765333322 3467999999999999999999999999988877666532
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc--------------CCCCc
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT--------------DQNAR 227 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------------~~~~~ 227 (396)
. .-+..++.... ...||||||||++.+...+ -+...|+.+.. -+-.+
T Consensus 91 ~------gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE-----------~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 P------GDLAAILTNLE--EGDVLFIDEIHRLSPAVEE-----------VLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred h------hhHHHHHhcCC--cCCeEEEehhhhcChhHHH-----------HhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 2 11222332222 3489999999998543222 12222222110 01246
Q ss_pred EEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 228 VMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 228 v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
+.+|+||.+...+...|+.||.....+..++.++..+|++.......+. .+-...++|+++.| +++--..|+++
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrR 226 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRR 226 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHH
Confidence 8899999999999999999999999999999999999999988766665 33346789999998 55544444444
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.1e-18 Score=174.80 Aligned_cols=192 Identities=20% Similarity=0.264 Sum_probs=135.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
+.+.+|++|+|++.+++.|...+.. + +.++.+||+||+|+|||++|+.+++.+++.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~----------g---RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ----------Q---RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh----------C---CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 3467999999999999999877642 2 235778999999999999999999988761
Q ss_pred ------------------EEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHH
Q 016044 151 ------------------FINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTE 212 (396)
Q Consensus 151 ------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 212 (396)
++.++... ...+.+....+..+..........|+||||+|.|.. ...+.
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas--~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~AaNA 143 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS--NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------HAFNA 143 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------HHHHH
Confidence 22222211 111222222232222222233457999999999832 22345
Q ss_pred HHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCC-CCHHHHHHhCCCC
Q 016044 213 FMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEEN-IDFDYLAGLCEGF 291 (396)
Q Consensus 213 ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~-~~l~~la~~~~g~ 291 (396)
|++.++. .+.++++|++||.++.+.+.+++|| ..+.|..++.++..+.++.++....+..+ ..+..|++.+.|
T Consensus 144 LLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G- 217 (700)
T PRK12323 144 MLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG- 217 (700)
T ss_pred HHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 6665553 4667899999999999999999999 99999999999999999998876554422 225677888887
Q ss_pred cHHHHHHHHHHHHH
Q 016044 292 TGSDLLEVCKQAAY 305 (396)
Q Consensus 292 s~~di~~l~~~A~~ 305 (396)
+.++..++++.+..
T Consensus 218 s~RdALsLLdQaia 231 (700)
T PRK12323 218 SMRDALSLTDQAIA 231 (700)
T ss_pred CHHHHHHHHHHHHH
Confidence 67777777776553
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=3e-18 Score=167.65 Aligned_cols=187 Identities=19% Similarity=0.222 Sum_probs=132.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
..+.+|++++|++.+++.|...+.. + +.++.+||+||||||||++|+.+|+.+++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~----------~---ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS----------G---KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 3467999999999999998876642 1 124678999999999999999999988753
Q ss_pred -------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 151 -------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 151 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
++.++... ...-..++.+...+. .....|+||||+|.+.. ...+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHH
Confidence 22222211 001122333332222 23456999999999832 123355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
+..++ +++..+++|++|+.++.+.+++++|| ..+.|..++.++..+.++..+....+. .+-.+..+++.+.| +
T Consensus 142 LKtLE----EPp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d 215 (484)
T PRK14956 142 LKTLE----EPPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-S 215 (484)
T ss_pred HHHhh----cCCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-h
Confidence 55554 34678899999999999999999999 889999999999999999998766554 33347788888887 5
Q ss_pred HHHHHHHHHHHH
Q 016044 293 GSDLLEVCKQAA 304 (396)
Q Consensus 293 ~~di~~l~~~A~ 304 (396)
.++.-++++.+.
T Consensus 216 ~RdAL~lLeq~i 227 (484)
T PRK14956 216 VRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=4.9e-18 Score=172.14 Aligned_cols=188 Identities=22% Similarity=0.292 Sum_probs=134.4
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
+.+.+|++|+|++.+++.|...+.. + +.++.+||+||+|||||++++.+++.+++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~----------g---RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDG----------G---RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 3467999999999999999877642 1 235678999999999999999999988652
Q ss_pred -------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 151 -------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 151 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
++.++..+ ...+ ..++.++..+. .....|+||||+|.|.. ...+.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas--~rgV----DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS--NRGV----DEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccc--cccH----HHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHH
Confidence 22332221 0111 22333443332 22347999999999832 123355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
++.++. .+.++.+|++||.++.|.+.+++|| ..+.|..++.++..+.|+.++..+.+. ++-.+..|++.+.| +
T Consensus 140 LKtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 555553 3567899999999999999999999 899999999999999999999776654 23346778888887 5
Q ss_pred HHHHHHHHHHHHH
Q 016044 293 GSDLLEVCKQAAY 305 (396)
Q Consensus 293 ~~di~~l~~~A~~ 305 (396)
.++..+++.++..
T Consensus 214 mRdALsLLdQAia 226 (830)
T PRK07003 214 MRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHH
Confidence 5666677666553
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.77 E-value=9.4e-18 Score=174.56 Aligned_cols=224 Identities=20% Similarity=0.313 Sum_probs=155.5
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEE
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFINV 154 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~i 154 (396)
-.++.++|.++..+.+.+.+.. ....++||+||||||||++|++++... +..++.+
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 3566788988888888765531 124678999999999999999999863 4566666
Q ss_pred eccccc--chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC-CchHHHHhhHHHHHHHhhccCcCCCCcEEEE
Q 016044 155 RISNLM--SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT-SDHEALTNMKTEFMALWDGFTTDQNARVMVL 231 (396)
Q Consensus 155 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 231 (396)
+...+. .++.|+.+..++.++..+....++||||||+|.+.+.... .......+++..++ . .+.+.+|
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---~------~g~i~vI 319 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---S------SGKIRVI 319 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---h------CCCeEEE
Confidence 666555 4577889999999999888888899999999999876542 22222222222222 1 5679999
Q ss_pred EecCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCH-----HHHHHhCC-----CCcHHHH
Q 016044 232 AATNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDF-----DYLAGLCE-----GFTGSDL 296 (396)
Q Consensus 232 ~atn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l-----~~la~~~~-----g~s~~di 296 (396)
++|+.++ ..|+++.||| ..|.++.|+.+++..||+.+...+....++.+ ...+..+. .+-|...
T Consensus 320 gATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred ecCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 9999764 5799999999 68999999999999999988766555544443 22233333 3445567
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 297 LEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 297 ~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
..++++|+...- ..... .....++.+|+.+.+....
T Consensus 399 idlldea~a~~~--~~~~~------~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 399 IDVIDEAGARAR--LMPVS------KRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHhhc--cCccc------ccccccChhhHHHHHHHHh
Confidence 778888765321 10000 1123578888888776643
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.2e-17 Score=165.88 Aligned_cols=186 Identities=20% Similarity=0.241 Sum_probs=132.8
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------------ 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------------ 150 (396)
.+.+|++|+|++.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~----------g---rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER----------G---RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 357999999999999999877642 2 235788999999999999999999988652
Q ss_pred ------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 151 ------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 151 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
++.++.++- ..+ ..++.+...+. ..+..|++|||+|.|... ..+.++
T Consensus 77 sC~~I~~g~hpDviEIDAAs~--~~V----ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-----------A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR--TKV----EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-----------SFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc--CCH----HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-----------HHHHHH
Confidence 233333211 011 22333333221 234579999999998322 233555
Q ss_pred HHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcH
Q 016044 215 ALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 215 ~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 293 (396)
+.++. .+..+.+|++|+.+..++..+++|| ..+.|.+++.++....++..+...... .+..+..+++.+.| +.
T Consensus 140 KtLEE----PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE----PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc----CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55553 3456788888888889999999999 899999999999999999999876654 23346778888876 66
Q ss_pred HHHHHHHHHHH
Q 016044 294 SDLLEVCKQAA 304 (396)
Q Consensus 294 ~di~~l~~~A~ 304 (396)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 61
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=1.9e-17 Score=168.40 Aligned_cols=190 Identities=25% Similarity=0.318 Sum_probs=132.8
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------------ 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------------ 150 (396)
.+.+|++|+|++.+++.|...+.. + +-++.+||+||+|+|||++|+.+|+.+++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~----------~---rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL----------G---RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 357899999999999999876642 2 125668999999999999999999988663
Q ss_pred ------------EEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhh
Q 016044 151 ------------FINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD 218 (396)
Q Consensus 151 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 218 (396)
++.++... ...+......+..+..........|+||||+|.|.. ...+.|++.++
T Consensus 78 ~C~~i~~g~~~D~ieidaas--~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NALLKtLE 144 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS--RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKTLE 144 (647)
T ss_pred HHHHHHcCCCCCceeecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHHHHHHH
Confidence 22232221 001112222222221111223457999999999832 22345666665
Q ss_pred ccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHH
Q 016044 219 GFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLL 297 (396)
Q Consensus 219 ~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~ 297 (396)
. ++..+.+|++|+.+..+.+.+++|| ..+.|..++.++....|+..+....+. .+..+..++..+.| +.++..
T Consensus 145 E----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al 218 (647)
T PRK07994 145 E----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDAL 218 (647)
T ss_pred c----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3 4667888888999999999999998 999999999999999999988765543 22346678888887 667777
Q ss_pred HHHHHHH
Q 016044 298 EVCKQAA 304 (396)
Q Consensus 298 ~l~~~A~ 304 (396)
++++.+.
T Consensus 219 ~lldqai 225 (647)
T PRK07994 219 SLTDQAI 225 (647)
T ss_pred HHHHHHH
Confidence 7776654
No 62
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.6e-17 Score=166.67 Aligned_cols=188 Identities=22% Similarity=0.237 Sum_probs=133.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
..+.+|++|+|++.+++.|...+.. + +.++.+||+||||||||++|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~----------~---~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQ----------Q---YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHh----------C---CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 3467999999999999999887742 1 235678999999999999999999988653
Q ss_pred -------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 151 -------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 151 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
++.++... ...+ ..++.+...+. .....|++|||+|.|... ..+.+
T Consensus 77 ~~C~~i~~g~~~d~~eidaas--~~~v----~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-----------a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS--RTKV----EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-----------SFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc--cCCH----HHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----------HHHHH
Confidence 33444321 1111 12333333322 223469999999998422 22355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
++.++. .+..+.+|.+|+.+..+.+.+++|| ..+.|.+++.++....++..+...+.. .+..+..+++.+.| +
T Consensus 140 Lk~LEe----pp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEE----PPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhc----cCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 555553 3567888888888999999999999 889999999999999999988766554 22346678888776 7
Q ss_pred HHHHHHHHHHHHH
Q 016044 293 GSDLLEVCKQAAY 305 (396)
Q Consensus 293 ~~di~~l~~~A~~ 305 (396)
.+++.++++.+..
T Consensus 214 lR~al~lLdq~ia 226 (509)
T PRK14958 214 VRDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHHHh
Confidence 7788888876643
No 63
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.1e-16 Score=165.38 Aligned_cols=192 Identities=21% Similarity=0.217 Sum_probs=132.0
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEE-------EE-
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI-------NV- 154 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~-------~i- 154 (396)
.+.+|++|+|++.+++.|+..+.. + +.++.+||+||||||||++|+++|+.+++... .+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~----------~---rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQ----------Q---RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh----------C---CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 357999999999999999877642 1 22566899999999999999999998876410 00
Q ss_pred ecccccch-------hhc---hHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc
Q 016044 155 RISNLMSK-------WFG---DAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF 220 (396)
Q Consensus 155 ~~~~l~~~-------~~g---~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 220 (396)
.|-.+... +-+ ..-..++.+...+. .....|+||||+|.|.. ...+.|++.++.
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eAqNALLKtLEE- 145 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SSFNALLKTLEE- 145 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HHHHHHHHHHhc-
Confidence 00000000 000 01112333333222 23447999999999832 233355665553
Q ss_pred CcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHH
Q 016044 221 TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEV 299 (396)
Q Consensus 221 ~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l 299 (396)
.+..+++|++|+.+..+.+.+++|| .++.|.+++.++....|+..+....+. .+-.+..|++.+.| +.+++.++
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnL 220 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSL 220 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 4567888888998999999999999 899999999999999999988765443 22236778888887 66788888
Q ss_pred HHHHH
Q 016044 300 CKQAA 304 (396)
Q Consensus 300 ~~~A~ 304 (396)
|..+.
T Consensus 221 LdQal 225 (944)
T PRK14949 221 TDQAI 225 (944)
T ss_pred HHHHH
Confidence 87665
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=2.5e-17 Score=163.56 Aligned_cols=184 Identities=17% Similarity=0.224 Sum_probs=124.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA------------ 149 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~------------ 149 (396)
..+.+|++++|++.+++.|...+.. + ..++++||+||||||||++|+++|+.+++
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~~----------~---~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALKK----------N---SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 3467999999999999988776542 1 23567999999999999999999998764
Q ss_pred ------------cEEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 150 ------------VFINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 150 ------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
.++.++++.- .. -..++.+...+.. ....|++|||+|.+... ....+
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~--~g----id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-----------a~~~L 137 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASN--RG----IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-----------AFNAL 137 (472)
T ss_pred HHHHHHhcCCCCccEEEeCccc--CC----HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-----------HHHHH
Confidence 2444443211 11 1223333333321 23469999999998321 12344
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
+..++. .+..+++|++|+.+..+++++.+|| ..+.|.+++.++...+++..+...... ++..+..|+..+.| +
T Consensus 138 Lk~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-d 211 (472)
T PRK14962 138 LKTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-G 211 (472)
T ss_pred HHHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 454443 3456777877777889999999999 789999999999999999988655443 22336777777765 3
Q ss_pred HHHHHHHHH
Q 016044 293 GSDLLEVCK 301 (396)
Q Consensus 293 ~~di~~l~~ 301 (396)
.+++.+.++
T Consensus 212 lR~aln~Le 220 (472)
T PRK14962 212 LRDALTMLE 220 (472)
T ss_pred HHHHHHHHH
Confidence 333333333
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=5.3e-17 Score=157.49 Aligned_cols=186 Identities=21% Similarity=0.289 Sum_probs=128.2
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------------ 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------------ 150 (396)
.+.+|++|+|++.+++.+...+.. + +.++.+||+||||+|||++|+++|+.+++.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~----------~---~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL----------G---RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc----------C---CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 467999999999999999876642 1 235778999999999999999999987642
Q ss_pred ------------EEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 151 ------------FINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 151 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
++.++... ...-..++.+...+.. ....|++|||+|.+.. ...+.++
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLL 140 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALL 140 (363)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHH
Confidence 11222110 0111223344333321 1346999999998832 1122455
Q ss_pred HHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcH
Q 016044 215 ALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 215 ~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 293 (396)
..++. .+..+.+|.+|+.++.+.+++++|+ ..+.|++|+.++..++++..++..+.. ++..+..++..+.| +.
T Consensus 141 k~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE----PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc----CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55443 3456777888888888999999999 889999999999999999988765543 22346677888876 66
Q ss_pred HHHHHHHHHHH
Q 016044 294 SDLLEVCKQAA 304 (396)
Q Consensus 294 ~di~~l~~~A~ 304 (396)
+++.++++.++
T Consensus 215 R~al~~l~~~~ 225 (363)
T PRK14961 215 RDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=9e-17 Score=160.20 Aligned_cols=196 Identities=20% Similarity=0.230 Sum_probs=135.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEE--------
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI-------- 152 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~-------- 152 (396)
...+.+|++++|++.+++.|...+.. + +.++++||+||||||||++|+++|+.+++...
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~----------~---ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILN----------D---RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 34567999999999999998765531 1 23578999999999999999999998865210
Q ss_pred ----EEecccccch----------hhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 153 ----NVRISNLMSK----------WFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 153 ----~i~~~~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
.-+|..+... ........++.++..+.. ....|++|||+|.+.. ...+.|+
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLL 149 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALL 149 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHH
Confidence 0011111000 001122334455544432 2347999999998832 1223455
Q ss_pred HHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcH
Q 016044 215 ALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 215 ~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 293 (396)
..++. .+..+++|++|+.++.+++++++|+ ..+.|..++.++...+++..++..+.. .+..+..++..+.| +.
T Consensus 150 k~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 150 KTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA 223 (507)
T ss_pred HHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 54542 3567788888888889999999999 889999999999999999999876654 22336778888887 77
Q ss_pred HHHHHHHHHHHHH
Q 016044 294 SDLLEVCKQAAYF 306 (396)
Q Consensus 294 ~di~~l~~~A~~~ 306 (396)
+++.++++.+...
T Consensus 224 R~al~~Ldkai~~ 236 (507)
T PRK06645 224 RDAVSILDQAASM 236 (507)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776543
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.74 E-value=9.3e-17 Score=170.15 Aligned_cols=186 Identities=18% Similarity=0.284 Sum_probs=136.2
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
+-.++.++|.++..+.+.+.+. .+...+++|+||||||||++|+.+|..+ +..++.
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~--------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILL--------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHh--------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 4578899999998777765442 1124678999999999999999999875 355777
Q ss_pred Eeccccc--chhhchHHHHHHHHHHHHHH-hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEE
Q 016044 154 VRISNLM--SKWFGDAQKLVAAVFSLAYK-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMV 230 (396)
Q Consensus 154 i~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 230 (396)
++...+. ..+.|+.+..++.++..+.. ..++||||||+|.+.+.+.......... -|...+. ++.+.+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n---~Lkp~l~------~G~l~~ 319 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN---LLKPALA------RGELRT 319 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH---HhhHHhh------CCCeEE
Confidence 8877765 36789999999999998865 3578999999999987553222111111 1222222 567899
Q ss_pred EEecCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHhCCCCcH
Q 016044 231 LAATNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-----ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 231 I~atn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-----~~~~l~~la~~~~g~s~ 293 (396)
||||+..+ .+|++|.||| ..|.++.|+.+++..||+.+...+... .+..+..++..+.+|.+
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 99998643 5899999999 789999999999999987776543322 23346677788887654
No 68
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=8.3e-17 Score=163.10 Aligned_cols=188 Identities=22% Similarity=0.262 Sum_probs=135.3
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcE----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF---------- 151 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~---------- 151 (396)
+.+.+|++|+|++.+++.|...+.. + +.++++||+||+|||||++|+++|+.+++.-
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~----------~---rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE----------G---RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 4467999999999999999887652 1 2367899999999999999999999876431
Q ss_pred --------------EEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 152 --------------INVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 152 --------------~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
+.++... ...-..++.++..+. .....|+||||+|.+.. ...+.|
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NAL 139 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAM 139 (709)
T ss_pred HHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHH
Confidence 1222111 111223444444332 22447999999998732 123356
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
++.++. .+..+.+|++|+.+..+...+++|| ..+.|+.++.++....++..+...++. .+..+..|++.+.| +
T Consensus 140 LKtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-s 213 (709)
T PRK08691 140 LKTLEE----PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-S 213 (709)
T ss_pred HHHHHh----CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-C
Confidence 666653 3456788888899999999999999 889999999999999999999876654 22336788888876 7
Q ss_pred HHHHHHHHHHHHH
Q 016044 293 GSDLLEVCKQAAY 305 (396)
Q Consensus 293 ~~di~~l~~~A~~ 305 (396)
.+++.++++.+..
T Consensus 214 lRdAlnLLDqaia 226 (709)
T PRK08691 214 MRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888877654
No 69
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=7.5e-17 Score=159.57 Aligned_cols=188 Identities=19% Similarity=0.230 Sum_probs=134.7
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA------------ 149 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~------------ 149 (396)
+.+.+|+|++|++.+++.|...+. .+ +.++++||+||+|+|||++|+.+|+.+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~----------~~---ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT----------LN---KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----------cC---CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 346799999999999999976553 22 23678999999999999999999986543
Q ss_pred ------------cEEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 150 ------------VFINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 150 ------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
.++.+++++-. +-..++.+...+. .....|++|||+|.+.. ...+.|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaL 136 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNAL 136 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHH
Confidence 23444443211 1122444444332 22457999999998832 123355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
++.++. ++..+.+|++|+.++.+.+.+++|+ ..+.|.+++.++....++..+...+.. ++..+..+++.+.| +
T Consensus 137 LK~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEE----PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhC----CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 555553 4567888888888889999999999 889999999999999999998876654 33346778888876 7
Q ss_pred HHHHHHHHHHHHH
Q 016044 293 GSDLLEVCKQAAY 305 (396)
Q Consensus 293 ~~di~~l~~~A~~ 305 (396)
.+++.++++.+..
T Consensus 211 lR~alslLdqli~ 223 (491)
T PRK14964 211 MRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 70
>PRK04195 replication factor C large subunit; Provisional
Probab=99.74 E-value=9.7e-17 Score=161.36 Aligned_cols=189 Identities=25% Similarity=0.365 Sum_probs=132.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
.+.+.+|++|+|++++++.+..++.. +..+ .+++++||+||||||||++|+++|++++..++.+++++..
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~-------~~~g---~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIES-------WLKG---KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHH-------HhcC---CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 34577899999999999999998853 2222 2368899999999999999999999999999999988754
Q ss_pred chhhchHHHHHHHHHHHHHH------hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec
Q 016044 161 SKWFGDAQKLVAAVFSLAYK------LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT 234 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~------~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 234 (396)
.. ..+..+...+.. ..+.+|+|||+|.+........ ...++..++. .+..+|+++
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~-------~~aL~~~l~~------~~~~iIli~ 137 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGG-------ARAILELIKK------AKQPIILTA 137 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhH-------HHHHHHHHHc------CCCCEEEec
Confidence 32 122222222211 2467999999999865322111 2234444432 233567778
Q ss_pred CCCCCCcH-HHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHH
Q 016044 235 NRPSELDE-AILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQA 303 (396)
Q Consensus 235 n~~~~l~~-~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A 303 (396)
|.+..+.. .+++|+ ..+.|++|+..+...+++.++....+. ++..++.|+..+.| |++.+++..
T Consensus 138 n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 138 NDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred cCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 88888877 677777 889999999999999999999766554 22336677776654 666665543
No 71
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.1e-16 Score=162.45 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=130.9
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------------ 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------------ 150 (396)
.+.+|++|+|++.+++.|...+.. + +-++.+||+||+|+|||++|+++|+.+++.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~----------~---rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQ----------Q---RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 357999999999999999877642 1 235778999999999999999999988652
Q ss_pred -----------------EEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhh
Q 016044 151 -----------------FINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNM 209 (396)
Q Consensus 151 -----------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~ 209 (396)
++.++... . ..-..++.+...+.. ....|++|||+|.|... .
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas--~----~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-----------a 140 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAAS--N----RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-----------A 140 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCccc--c----cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------H
Confidence 22222111 0 011223444433321 22469999999998322 1
Q ss_pred HHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhC
Q 016044 210 KTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLC 288 (396)
Q Consensus 210 ~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~ 288 (396)
.+.+++.++ +.+..+.+|++|+.+..+...+++|| ..+.|..++.++....++..+...+.. .+..+..|++.+
T Consensus 141 ~NaLLKtLE----EPP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLE----EPPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhcc----cCCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 234555444 24567788888888889999999999 999999999999999999988766554 223367788888
Q ss_pred CCCcHHHHHHHHHHHHH
Q 016044 289 EGFTGSDLLEVCKQAAY 305 (396)
Q Consensus 289 ~g~s~~di~~l~~~A~~ 305 (396)
.| +.+++.++++.+..
T Consensus 216 ~G-slR~al~lLdq~ia 231 (618)
T PRK14951 216 RG-SMRDALSLTDQAIA 231 (618)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 86 66777777665443
No 72
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.3e-16 Score=158.81 Aligned_cols=257 Identities=19% Similarity=0.261 Sum_probs=161.6
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc--------
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM-------- 160 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~-------- 160 (396)
|-.|++++|.++.+++......+. . ...-++|+||||+|||+|+++||+.+|..|+.++...+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~----~----kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK----L----KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc----C----CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 568999999999888754221111 1 124478999999999999999999999999999875553
Q ss_pred -chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHH--HHHHhhccCc--CCCCcEEEEEecC
Q 016044 161 -SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTE--FMALWDGFTT--DQNARVMVLAATN 235 (396)
Q Consensus 161 -~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~--ll~~l~~~~~--~~~~~v~vI~atn 235 (396)
..|+|.....+-+-...+...+ .+++|||||.+..+-+.....++..++.- -....|.+.. .+-++|++|+|+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~N-Pv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKN-PVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred cccccccCChHHHHHHHHhCCcC-CeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC
Confidence 2477887777777677776655 48999999999776554444333322110 0001111111 1235799999999
Q ss_pred CCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhc-----CCCCC-CCC--CHHHHHHhCCCCcH--------HHHHHH
Q 016044 236 RPSELDEAILRRLPQAFEIGMPDRKERAQILKVILK-----GEKVE-ENI--DFDYLAGLCEGFTG--------SDLLEV 299 (396)
Q Consensus 236 ~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~-----~~~~~-~~~--~l~~la~~~~g~s~--------~di~~l 299 (396)
..+.++.+|++|+ .+|+++-++.+|..+|.+.++- ...+. .++ .-+.|-.....|+. ++|..+
T Consensus 475 sl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki 553 (782)
T COG0466 475 SLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKI 553 (782)
T ss_pred ccccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHH
Confidence 9999999999999 9999999999999999998873 22332 111 11222222222221 133333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHhcccchhhhhhhhcc--CCCCCccccCCCc
Q 016044 300 CKQAAYFSIRELLDEERKGKPAAAP-RPLSRLDLEKVLTTSRKTRVAATEYTLN--SQSSGWSRNNESN 365 (396)
Q Consensus 300 ~~~A~~~a~~~~~~~~~~~~~~~~~-~~i~~~d~~~al~~~~~~~~~~~~~~~~--~~~~~w~di~~~~ 365 (396)
|+.++..-+. ..... ..++..++.+-|...+-........... ..-.+|..+||..
T Consensus 554 ~RK~~~~i~~----------~~~k~~~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGGd~ 612 (782)
T COG0466 554 CRKAAKKILL----------KKEKSIVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGGDL 612 (782)
T ss_pred HHHHHHHHHh----------cCcccceeeCHHHHHHHhCCcccCccccccCCCCeeEeeeeeecCCceE
Confidence 3333222221 11111 4688888888887654443222222222 3346799999853
No 73
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.8e-16 Score=160.05 Aligned_cols=187 Identities=21% Similarity=0.253 Sum_probs=131.8
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------------ 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------------ 150 (396)
.+.+|++|+|++.+++.|...+.. -+.++.+||+||||+|||++|+.+|+.+++.
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 356999999999999999877642 1235778999999999999999999988652
Q ss_pred ------------EEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 151 ------------FINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 151 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
++.++.+. ...-..++.+...+.. ....|++|||+|.+.. ...+.++
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLL 140 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAML 140 (527)
T ss_pred HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHH
Confidence 12222111 0112234444444422 2346999999998832 1233556
Q ss_pred HHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcH
Q 016044 215 ALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 215 ~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 293 (396)
+.++. .+..+.+|++|+.+..+.+.+++|| ..+.|..++.++....+...+...+.. .+..+..++..+.| +.
T Consensus 141 K~LEe----pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhC----CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 65553 3567888888888888888899999 999999999999999999988765544 22335677777776 66
Q ss_pred HHHHHHHHHHHH
Q 016044 294 SDLLEVCKQAAY 305 (396)
Q Consensus 294 ~di~~l~~~A~~ 305 (396)
+++.++++.+..
T Consensus 215 r~al~lldqai~ 226 (527)
T PRK14969 215 RDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHHH
Confidence 777777776643
No 74
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=2.2e-16 Score=153.36 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=125.0
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcE--------------
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF-------------- 151 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~-------------- 151 (396)
.|++|+|++.+++.|+..+......+..+. ...++++||+||||+|||++|+++|+.+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~----~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG----SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC----CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 589999999999999999876543322221 12368899999999999999999999765431
Q ss_pred ---------EEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhh
Q 016044 152 ---------INVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD 218 (396)
Q Consensus 152 ---------~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 218 (396)
..+.+.. ... .-..++.++..+.. ....|++|||+|.+... ..+.+++.++
T Consensus 79 ~~~~~hpD~~~i~~~~---~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG---LSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecccc---ccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhh
Confidence 1111110 111 11235555555543 23469999999998322 1235666665
Q ss_pred ccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHH
Q 016044 219 GFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLE 298 (396)
Q Consensus 219 ~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~ 298 (396)
. ++.++++|.+|+.++.+.+++++|| ..+.|++|+.++..+++.... ... ......++..+.|..+..+.-
T Consensus 143 e----p~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 E----PPPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred c----CCCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 3 3444555656666899999999999 899999999999888876422 222 223557888899977766555
Q ss_pred HHH
Q 016044 299 VCK 301 (396)
Q Consensus 299 l~~ 301 (396)
+.+
T Consensus 214 ~~~ 216 (394)
T PRK07940 214 ATD 216 (394)
T ss_pred hcC
Confidence 443
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=3.4e-16 Score=156.98 Aligned_cols=186 Identities=19% Similarity=0.236 Sum_probs=128.3
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA------------- 149 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~------------- 149 (396)
.+.+|++++|++.+++.|...+.. + +.++.+||+||+|+|||++|+.+|+.+++
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~----------~---rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET----------Q---KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 357999999999999998876642 1 23567899999999999999999997764
Q ss_pred -----------cEEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 150 -----------VFINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 150 -----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
.++.++...- ..+. .++.+...+. .....|++|||+|.+.. ...+.|+
T Consensus 78 sC~~i~~~~~~dlieidaas~--~gvd----~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLL 140 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASR--TGVE----ETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALL 140 (546)
T ss_pred HHHHHhcCCCCceEEeecccc--cCHH----HHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHH
Confidence 1222222110 0111 2233333222 23457999999998832 1233555
Q ss_pred HHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcH
Q 016044 215 ALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 215 ~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 293 (396)
..++. .+..+.+|++|+.+..+.+.+++|+ ..++|.+++.++....++..+...+.. .+..+..++..+.| +.
T Consensus 141 K~LEe----pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEE----PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhc----CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55553 3566778878888888888899999 999999999999999999988766544 22335677777765 66
Q ss_pred HHHHHHHHHHH
Q 016044 294 SDLLEVCKQAA 304 (396)
Q Consensus 294 ~di~~l~~~A~ 304 (396)
+++.++++.+.
T Consensus 215 R~alnlLek~i 225 (546)
T PRK14957 215 RDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 76
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.72 E-value=3.8e-16 Score=154.15 Aligned_cols=181 Identities=28% Similarity=0.422 Sum_probs=122.8
Q ss_pred CcccccccChHHHHHH---HHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 84 DVEFESIGGLETIKQA---LYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~---l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.+|++++|++.+... +.+.+.. ....+++|+||||||||++|+++++..+..|+.+++....
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~ 73 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG 73 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc
Confidence 4689999999998665 7665531 1245799999999999999999999999999999876431
Q ss_pred chhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec--
Q 016044 161 SKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT-- 234 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at-- 234 (396)
...++.++..+. .....+|||||+|.+.... ...++..++ ...+++|++|
T Consensus 74 -------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~-----------q~~LL~~le------~~~iilI~att~ 129 (413)
T PRK13342 74 -------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ-----------QDALLPHVE------DGTITLIGATTE 129 (413)
T ss_pred -------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH-----------HHHHHHHhh------cCcEEEEEeCCC
Confidence 122333444332 2256899999999873211 123333333 2346677665
Q ss_pred CCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCC--C-C-CCCCHHHHHHhCCCCcHHHHHHHHHHHH
Q 016044 235 NRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEK--V-E-ENIDFDYLAGLCEGFTGSDLLEVCKQAA 304 (396)
Q Consensus 235 n~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~--~-~-~~~~l~~la~~~~g~s~~di~~l~~~A~ 304 (396)
|....+++++++|| ..+.+++++.++...+++..+.... . . .+..++.+++.+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33457899999999 8899999999999999998875421 1 1 11225567777755 4445555555543
No 77
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.71 E-value=1.8e-16 Score=168.48 Aligned_cols=168 Identities=20% Similarity=0.336 Sum_probs=127.5
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
+-.++.++|.++..+.+.+.+. .+...+++|+||||||||++|+.+|... +.+++.
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~--------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQ--------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHh--------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 3468899999998777765543 1224679999999999999999999987 678888
Q ss_pred Eeccccc--chhhchHHHHHHHHHHHHHH-hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEE
Q 016044 154 VRISNLM--SKWFGDAQKLVAAVFSLAYK-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMV 230 (396)
Q Consensus 154 i~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 230 (396)
++...+. .++.|+.+..++.+|..... ..++||||||+|.+.+............+ +...+ .++.+.+
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~---lkp~l------~~g~l~~ 310 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNM---LKPAL------ARGELHC 310 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHH---hcchh------hcCCCeE
Confidence 8888765 45789999999999987644 46789999999999866533222111222 11111 2567899
Q ss_pred EEecCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCC
Q 016044 231 LAATNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKV 275 (396)
Q Consensus 231 I~atn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~ 275 (396)
||+|+..+ .+|+++.||| ..|.++.|+.+++..|++.+......
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf-~~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRF-QKVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhC-CEEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 99999765 4799999999 57889999999999999887765443
No 78
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=4.2e-16 Score=158.39 Aligned_cols=187 Identities=25% Similarity=0.322 Sum_probs=132.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
..+.+|++++|++.+++.|+..+.. -+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 3467999999999999999887652 1235778999999999999999999987532
Q ss_pred -------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 151 -------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 151 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
++.++... +..-..++.+...+. .....|++|||+|.|.. ...+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 23333211 111223444444433 22347999999998832 123355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
+..++. ++..+++|.+|+.++.+.+.+++|+ ..+.|++|+.++....++..+...++. ++..+..++..+.| +
T Consensus 140 LKtLEe----pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEE----PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcC----CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 555543 3567788888888999999999999 789999999999999999998766554 22336677887776 6
Q ss_pred HHHHHHHHHHHH
Q 016044 293 GSDLLEVCKQAA 304 (396)
Q Consensus 293 ~~di~~l~~~A~ 304 (396)
.++..++++.+.
T Consensus 214 ~R~al~~Ldq~~ 225 (559)
T PRK05563 214 MRDALSILDQAI 225 (559)
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=5.2e-16 Score=155.40 Aligned_cols=186 Identities=21% Similarity=0.290 Sum_probs=127.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
+.+.+|++|+|++.+++.|...+.. + ..++.+||+||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~----------~---~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ----------G---RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 4467999999999999999887652 1 235668999999999999999999987531
Q ss_pred ------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 151 ------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 151 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
++.++.+.- . .-..++.+...+. ...+.+++|||+|.+.. ...+.++
T Consensus 75 sc~~i~~~~h~dv~el~~~~~--~----~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASN--N----SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEeccccc--C----CHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHH
Confidence 333333210 1 1122333333222 23457999999997621 1233455
Q ss_pred HHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcH
Q 016044 215 ALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 215 ~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 293 (396)
..++. .+..+++|.+++.+..+.+.+.+|+ ..+.|.+|+.++....++..+...+.. ++-.+..++..+.| +.
T Consensus 138 k~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55543 2456778888888899999999999 789999999999999999998766554 22336677887776 44
Q ss_pred HHHHHHHHHH
Q 016044 294 SDLLEVCKQA 303 (396)
Q Consensus 294 ~di~~l~~~A 303 (396)
+++.++++..
T Consensus 212 R~aln~Lekl 221 (504)
T PRK14963 212 RDAESLLERL 221 (504)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=99.71 E-value=3.1e-16 Score=149.68 Aligned_cols=177 Identities=20% Similarity=0.217 Sum_probs=119.6
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CcEEEEe
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-----AVFINVR 155 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~-----~~~~~i~ 155 (396)
.+.+.+|++++|++++++.|+.++.. + ...++||+||||||||++|+++|+++. ..++.++
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 34577999999999999999776531 1 124699999999999999999999872 2356666
Q ss_pred cccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEE
Q 016044 156 ISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVL 231 (396)
Q Consensus 156 ~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 231 (396)
.++..+. ......+.. +.... ...+.+++|||+|.+.... + +.++..++.. +....+|
T Consensus 72 ~sd~~~~--~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~lt~~a----q-------~aL~~~lE~~----~~~t~~i 133 (319)
T PLN03025 72 ASDDRGI--DVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSMTSGA----Q-------QALRRTMEIY----SNTTRFA 133 (319)
T ss_pred ccccccH--HHHHHHHHH-HHhccccCCCCCeEEEEEechhhcCHHH----H-------HHHHHHHhcc----cCCceEE
Confidence 6543221 111111111 11110 1235799999999984321 1 1333333322 3345677
Q ss_pred EecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC
Q 016044 232 AATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEG 290 (396)
Q Consensus 232 ~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g 290 (396)
.+||.+..+.+++++|+ ..+.|++|+.++....++..++..+.. .+..+..++..+.|
T Consensus 134 l~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 134 LACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred EEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888889999999999 789999999999999999998766554 23346677776665
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.71 E-value=3.8e-16 Score=144.03 Aligned_cols=211 Identities=26% Similarity=0.358 Sum_probs=138.4
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---EEEEeccccc
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV---FINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~---~~~i~~~~l~ 160 (396)
+.+++|.+|++.+..+ ..++. .+...+ .-..++||||||||||++|+.|+.....+ |++++...-
T Consensus 134 PktL~dyvGQ~hlv~q-~gllr------s~ieq~----~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a- 201 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLR------SLIEQN----RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA- 201 (554)
T ss_pred cchHHHhcchhhhcCc-chHHH------HHHHcC----CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-
Confidence 5678888888876554 11111 111112 23679999999999999999999977654 666665432
Q ss_pred chhhchHHHHHHHHHHHHHHh-----CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec-
Q 016044 161 SKWFGDAQKLVAAVFSLAYKL-----QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT- 234 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~-----~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at- 234 (396)
.-+-++.+|+.++.. ...|||||||+++....+. .|+-.+ .++.|.+|++|
T Consensus 202 ------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD-----------~fLP~V------E~G~I~lIGATT 258 (554)
T KOG2028|consen 202 ------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD-----------TFLPHV------ENGDITLIGATT 258 (554)
T ss_pred ------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh-----------ccccee------ccCceEEEeccc
Confidence 234567777766543 3479999999998544332 222211 25678899887
Q ss_pred -CCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhc---C-----CCCCC------CCCHHHHHHhCCCCcHHHHHHH
Q 016044 235 -NRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILK---G-----EKVEE------NIDFDYLAGLCEGFTGSDLLEV 299 (396)
Q Consensus 235 -n~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~---~-----~~~~~------~~~l~~la~~~~g~s~~di~~l 299 (396)
|+.-.++.+|++|| .++.+...+.++...||..... . .++.. +--++.++..++|-....|..|
T Consensus 259 ENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~L 337 (554)
T KOG2028|consen 259 ENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNAL 337 (554)
T ss_pred CCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHH
Confidence 45568999999999 8899999999999999987443 1 11111 1126788888888666555554
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 300 CKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 300 ~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
--.+.+.+.+.. ......++.+|+.++|..-
T Consensus 338 ems~~m~~tr~g---------~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 338 EMSLSMFCTRSG---------QSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHhhcC---------CcccceecHHHHHHHHhhc
Confidence 433333333321 1234679999999998764
No 82
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=6.6e-16 Score=156.33 Aligned_cols=191 Identities=17% Similarity=0.241 Sum_probs=129.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
+.+.+|++|+|++.+++.|+..+.. + +.++.+||+||+|||||++|+++|+.+++.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~----------~---r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA----------G---RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 3467999999999999999887642 1 235678999999999999999999987642
Q ss_pred ---------------EEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHH
Q 016044 151 ---------------FINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMA 215 (396)
Q Consensus 151 ---------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 215 (396)
++.++.+.. ..+.+.......+..........|++|||+|.|... ..+.|++
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~--~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-----------A~NALLK 140 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH--GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-----------GFNALLK 140 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc--cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-----------HHHHHHH
Confidence 122222110 011222222222211112234479999999998322 2335566
Q ss_pred HhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHH
Q 016044 216 LWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGS 294 (396)
Q Consensus 216 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 294 (396)
.++. .+..+++|++|+.++.+.+++++|+ ..+.|..++.++..+.++.++...+.. ++..+..++..+.| +.+
T Consensus 141 ~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR 214 (584)
T PRK14952 141 IVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPR 214 (584)
T ss_pred HHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 5553 4567888888888899999999998 899999999999999999998866543 22235556666665 666
Q ss_pred HHHHHHHHHH
Q 016044 295 DLLEVCKQAA 304 (396)
Q Consensus 295 di~~l~~~A~ 304 (396)
++.++++...
T Consensus 215 ~aln~Ldql~ 224 (584)
T PRK14952 215 DTLSVLDQLL 224 (584)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 83
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-16 Score=157.02 Aligned_cols=173 Identities=20% Similarity=0.313 Sum_probs=123.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc--------
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM-------- 160 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~-------- 160 (396)
|-.|++++|+++-+++-.-.. +.....+-++|+||||+|||+++++||+.+|..|+.++...+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kL--------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKL--------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhh--------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 678999999999887653111 1112235588999999999999999999999999998875543
Q ss_pred -chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHH--HHHHHhhccCc--CCCCcEEEEEecC
Q 016044 161 -SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKT--EFMALWDGFTT--DQNARVMVLAATN 235 (396)
Q Consensus 161 -~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~--~ll~~l~~~~~--~~~~~v~vI~atn 235 (396)
..|+|.....+-+.+......+ .+++|||+|.+.+.-+.....++..++. +-.+.+|.+.. -+-++|++|||+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~N-PliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTEN-PLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCC-ceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc
Confidence 2477777777666666665555 4888999999974433333322221110 00011222111 1235799999999
Q ss_pred CCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhc
Q 016044 236 RPSELDEAILRRLPQAFEIGMPDRKERAQILKVILK 271 (396)
Q Consensus 236 ~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~ 271 (396)
..+.++++|++|+ ..|+++-+..+|...|.+.++-
T Consensus 563 ~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 563 VIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred ccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 9999999999999 9999999999999999998873
No 84
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.70 E-value=3.8e-16 Score=155.94 Aligned_cols=198 Identities=21% Similarity=0.346 Sum_probs=125.7
Q ss_pred CCccccccc-C--hHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEE
Q 016044 83 IDVEFESIG-G--LETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINV 154 (396)
Q Consensus 83 ~~~~~~~i~-G--~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i 154 (396)
+..+|++++ | +..+...+.++...| + ...++++||||||||||+|++++++++ +..++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~---------~---~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP---------G---KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc---------C---ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 456888854 4 233445554443321 0 123579999999999999999999976 5668889
Q ss_pred ecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec
Q 016044 155 RISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT 234 (396)
Q Consensus 155 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 234 (396)
++.++...+...........|..... .+.+|+|||+|.+.++.. ...+++..++.... ....++|++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~---------~~~~l~~~~n~l~~--~~~~iiits~ 252 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER---------TQEEFFHTFNALHE--AGKQIVLTSD 252 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH---------HHHHHHHHHHHHHH--CCCcEEEECC
Confidence 98887665544332211122222222 468999999999854431 11234444444332 2234556555
Q ss_pred CCCCC---CcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 016044 235 NRPSE---LDEAILRRLP--QAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAY 305 (396)
Q Consensus 235 n~~~~---l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~ 305 (396)
..|.. +++.+.+||. ..+.+.+|+.++|..|++..+...... ++-.++.||..+.| +.++|..++.....
T Consensus 253 ~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 253 RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 55554 6789999995 478999999999999999998754432 22237778887775 55666666555443
No 85
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=8.3e-16 Score=155.17 Aligned_cols=187 Identities=20% Similarity=0.259 Sum_probs=125.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
+.+.+|++|+|++.+++.|...+.. + +-++.+||+||+|||||++|+.+|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~----------~---ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE----------N---RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 3467999999999999999877642 1 124689999999999999999999988653
Q ss_pred -------------EEEEecccccchhhchHHHHHHHHHH-HHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHH
Q 016044 151 -------------FINVRISNLMSKWFGDAQKLVAAVFS-LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMAL 216 (396)
Q Consensus 151 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~-~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 216 (396)
++.++... ...+..... +...+. ........|+||||+|.|... ..+.|+..
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~--~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~-----------a~naLLk~ 142 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS--NRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTRE-----------AFNALLKT 142 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc--ccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHH-----------HHHHHHHH
Confidence 23333211 011112222 222222 112234579999999998321 23355555
Q ss_pred hhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHH
Q 016044 217 WDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSD 295 (396)
Q Consensus 217 l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~d 295 (396)
++. ....+++|++|+.+..+.+.+++|+ ..+.|+.++.++...+|+..+...... ++..++.+++.+.| +.++
T Consensus 143 LEE----P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~ 216 (624)
T PRK14959 143 LEE----PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRD 216 (624)
T ss_pred hhc----cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 553 2456888888988889999999999 789999999999999999988765543 22336677777775 3344
Q ss_pred HHHHHH
Q 016044 296 LLEVCK 301 (396)
Q Consensus 296 i~~l~~ 301 (396)
+.++++
T Consensus 217 Al~lLe 222 (624)
T PRK14959 217 SMSLLG 222 (624)
T ss_pred HHHHHH
Confidence 444444
No 86
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.3e-15 Score=155.86 Aligned_cols=193 Identities=21% Similarity=0.268 Sum_probs=131.4
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEE---ecc-
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINV---RIS- 157 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i---~~~- 157 (396)
+.+.+|++|+|++.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+.+.-... .|.
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~----------~---rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS----------N---KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 4577999999999999999887742 1 2357789999999999999999999876531100 010
Q ss_pred ---------cccc-hhhc-hHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc
Q 016044 158 ---------NLMS-KWFG-DAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT 222 (396)
Q Consensus 158 ---------~l~~-~~~g-~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 222 (396)
++.. ...+ ..-..++.+...+.. ....|++|||+|.|... ..+.|+..++.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-----------A~NALLKtLEE--- 144 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-----------AFNALLKTLEE--- 144 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-----------HHHHHHHHhhc---
Confidence 0000 0000 112234444444432 34479999999988421 23355655553
Q ss_pred CCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHhCCCCcHHHHHHHHH
Q 016044 223 DQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEE-NIDFDYLAGLCEGFTGSDLLEVCK 301 (396)
Q Consensus 223 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~di~~l~~ 301 (396)
++..+++|++|+.++.+.+++++|| .++.|.+|+.++....++..+...+..- +..+..++..+.| +.+++..+++
T Consensus 145 -PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLe 221 (725)
T PRK07133 145 -PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAE 221 (725)
T ss_pred -CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4567888888888999999999999 7999999999999999998887655432 2236677877776 5566666665
Q ss_pred HHH
Q 016044 302 QAA 304 (396)
Q Consensus 302 ~A~ 304 (396)
.+.
T Consensus 222 kl~ 224 (725)
T PRK07133 222 QVS 224 (725)
T ss_pred HHH
Confidence 543
No 87
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.69 E-value=4.6e-15 Score=144.55 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=141.1
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---------CcEEEEeccc
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---------AVFINVRISN 158 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---------~~~~~i~~~~ 158 (396)
++++|.++.++.|...+...+ .. ..+.+++|+||||||||++++++++++. ..+++++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~------~~----~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL------RG----SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH------cC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 478999999999988765211 11 1246799999999999999999988652 5688888865
Q ss_pred ccchh----------h--c--------hHHHHHHHHHHHHHH-hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHh
Q 016044 159 LMSKW----------F--G--------DAQKLVAAVFSLAYK-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALW 217 (396)
Q Consensus 159 l~~~~----------~--g--------~~~~~~~~~f~~a~~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 217 (396)
..+.. . + ........++..... ..+.||+|||+|.+..... ..+..++...
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~~~ 156 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSRAR 156 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhccc
Confidence 43211 0 0 112223344443332 3457899999999963211 1222333221
Q ss_pred hccCcCCCCcEEEEEecCCCC---CCcHHHHhccC-CceEeCCCCHHHHHHHHHHHhcCCCCC---CCCCHHHHHH---h
Q 016044 218 DGFTTDQNARVMVLAATNRPS---ELDEAILRRLP-QAFEIGMPDRKERAQILKVILKGEKVE---ENIDFDYLAG---L 287 (396)
Q Consensus 218 ~~~~~~~~~~v~vI~atn~~~---~l~~~l~~R~~-~~i~~~~P~~~er~~il~~~l~~~~~~---~~~~l~~la~---~ 287 (396)
+ .....+.++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+...... .+..++.++. .
T Consensus 157 ~-~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 157 S-NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred c-ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 1 1112246789999999875 57888888885 578999999999999999988521111 1111233333 3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 288 CEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 288 ~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
+.| ..+.+..+|+.|+..|..+. ...|+.+|+..|+..+.
T Consensus 236 ~~G-d~R~al~~l~~a~~~a~~~~------------~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 236 EHG-DARKAIDLLRVAGEIAEREG------------AERVTEDHVEKAQEKIE 275 (365)
T ss_pred hcC-CHHHHHHHHHHHHHHHHHcC------------CCCCCHHHHHHHHHHHH
Confidence 345 33455567778777665431 14699999999887764
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8.1e-16 Score=157.00 Aligned_cols=187 Identities=19% Similarity=0.230 Sum_probs=131.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
..+.+|++|+|++.+++.|...+.. + ..++.+||+||+|+|||++|+++|+.+++.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~----------~---~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT----------G---RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 3467999999999999999887642 1 235778999999999999999999987642
Q ss_pred -------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 151 -------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 151 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
++.++...- ..-..++.+...+. .....|++|||+|.|... ..+.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-----------a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-----------AFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-----------HHHHH
Confidence 222322110 01122344443332 123469999999988321 23355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
++.++. ++..+++|++|+.++.+.+.+++|| ..+.|..++.++....+...++..++. ++..+..++..+.| +
T Consensus 140 Lk~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 665553 4567888888899999999999999 899999999999999999988766554 23346777888876 5
Q ss_pred HHHHHHHHHHHH
Q 016044 293 GSDLLEVCKQAA 304 (396)
Q Consensus 293 ~~di~~l~~~A~ 304 (396)
.+++.++++.+.
T Consensus 214 lr~al~~Ldqli 225 (576)
T PRK14965 214 MRDSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHHHHH
Confidence 556555555443
No 89
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.69 E-value=6.7e-16 Score=164.71 Aligned_cols=186 Identities=19% Similarity=0.312 Sum_probs=135.4
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
+-.++.++|.++..+.+.+.+. .+..++++|+||||||||++++.++... +.+++.
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~--------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLS--------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHh--------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 3477889999998777766543 1224678999999999999999999875 677888
Q ss_pred Eeccccc--chhhchHHHHHHHHHHHHHHh-CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEE
Q 016044 154 VRISNLM--SKWFGDAQKLVAAVFSLAYKL-QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMV 230 (396)
Q Consensus 154 i~~~~l~--~~~~g~~~~~~~~~f~~a~~~-~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 230 (396)
++...+. .++.|+.+..+..++..+... .+.||||||+|.+.+......... ..+.+...+ ..+.+.+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d---~~~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD---AGNMLKPAL------ARGELHC 305 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH---HHHHhchhh------hcCceEE
Confidence 8887765 467889999999999988654 579999999999986443221111 111111111 2567899
Q ss_pred EEecCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHhCCCCcH
Q 016044 231 LAATNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENI-----DFDYLAGLCEGFTG 293 (396)
Q Consensus 231 I~atn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~-----~l~~la~~~~g~s~ 293 (396)
|++|+..+ .+|+++.||| ..+.++.|+.+++..|++.+...+.....+ .+...+..+.+|..
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 99998753 5799999999 678999999999999999887665544332 34555666665543
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.69 E-value=2.5e-16 Score=167.49 Aligned_cols=185 Identities=21% Similarity=0.333 Sum_probs=137.3
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEE
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFINV 154 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~i 154 (396)
-.++.++|.++.++.+.+.+. .+..++++|+||||||||++|+.+|... +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~--------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG--------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc--------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 468899999999999887654 1235789999999999999999999975 4788999
Q ss_pred eccccc--chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEE
Q 016044 155 RISNLM--SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLA 232 (396)
Q Consensus 155 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 232 (396)
+...+. .++.|+.+..+..++..+....++||||||+|.+.+............ -|...+. .+.+.+|+
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~---lLkp~l~------rg~l~~Ig 312 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAAN---ILKPALA------RGELQCIG 312 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHH---HhHHHHh------CCCcEEEE
Confidence 988776 467899999999999999877789999999999987654322111111 2222222 56789999
Q ss_pred ecCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcC----CCCC-CCCCHHHHHHhCCCCcH
Q 016044 233 ATNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKG----EKVE-ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 233 atn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~----~~~~-~~~~l~~la~~~~g~s~ 293 (396)
+|+..+ ..++++.+|| ..+.++.|+.++...|++..... ..+. .+-.+..++..+.+|.+
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 998653 4689999999 67899999999999998865431 1221 22235666777777654
No 91
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.68 E-value=2.2e-15 Score=145.16 Aligned_cols=210 Identities=18% Similarity=0.236 Sum_probs=133.1
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CcEEEEe
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-----AVFINVR 155 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~-----~~~~~i~ 155 (396)
.+.+.+|++++|++.+++.+..++.. + ...+++|+||||||||++|+++++++. .+++.++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS----------P----NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 34567899999999999999876642 1 123699999999999999999999874 3567788
Q ss_pred cccccchhh-------------ch-------HHHHHHHHHHHHHH-----hCCcEEEEccccccccCCCCCchHHHHhhH
Q 016044 156 ISNLMSKWF-------------GD-------AQKLVAAVFSLAYK-----LQPAIIFIDEVDSFLGQRRTSDHEALTNMK 210 (396)
Q Consensus 156 ~~~l~~~~~-------------g~-------~~~~~~~~f~~a~~-----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~ 210 (396)
++++..... +. ....++.+...... ..+.+|+|||+|.+... ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------~~ 142 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------AQ 142 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------HH
Confidence 776532210 00 01122222222222 23469999999987321 11
Q ss_pred HHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCC
Q 016044 211 TEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCE 289 (396)
Q Consensus 211 ~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~ 289 (396)
..+...++.. +....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+...... ++..++.++..+.
T Consensus 143 ~~L~~~le~~----~~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 143 QALRRIMEQY----SRTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHHHHHhc----cCCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 1333344432 223455666666677888899998 789999999999999999988766554 2334666777664
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHh
Q 016044 290 GFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTT 338 (396)
Q Consensus 290 g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 338 (396)
++++.+++.....+.. ...||.+++.+++..
T Consensus 218 ----gdlr~l~~~l~~~~~~--------------~~~It~~~v~~~~~~ 248 (337)
T PRK12402 218 ----GDLRKAILTLQTAALA--------------AGEITMEAAYEALGD 248 (337)
T ss_pred ----CCHHHHHHHHHHHHHc--------------CCCCCHHHHHHHhCC
Confidence 3555554433222110 124777777776654
No 92
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.68 E-value=1e-15 Score=151.00 Aligned_cols=171 Identities=23% Similarity=0.380 Sum_probs=112.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~ 197 (396)
.++++||||+|+|||+|++++++++ +..++++++.++...+...........|.... ..+.+|+|||+|.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 4679999999999999999999876 57788899887765543322211111122111 23579999999998544
Q ss_pred CCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC---CcHHHHhccCC--ceEeCCCCHHHHHHHHHHHhcC
Q 016044 198 RRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE---LDEAILRRLPQ--AFEIGMPDRKERAQILKVILKG 272 (396)
Q Consensus 198 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~---l~~~l~~R~~~--~i~~~~P~~~er~~il~~~l~~ 272 (396)
... ..+++..++.... ....++|++...|.. +++.+++||.. .+.+++|+.++|..|++..+..
T Consensus 215 ~~~---------~~~l~~~~n~~~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 ERT---------QEEFFHTFNALHE--NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred HHH---------HHHHHHHHHHHHH--CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 211 1134444443322 223355555555554 56889999964 6899999999999999999976
Q ss_pred CCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 016044 273 EKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYF 306 (396)
Q Consensus 273 ~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~ 306 (396)
.... ++-.++.||....+ +.+++..++......
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 5543 33347778888775 566776666554433
No 93
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.7e-15 Score=152.26 Aligned_cols=185 Identities=22% Similarity=0.290 Sum_probs=127.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA------------ 149 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~------------ 149 (396)
..+.+|++++|++.+++.+...+.. + +.++++||+||+|+|||++|+++|+.+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~----------~---rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILN----------N---KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 3467999999999999999876531 1 23578999999999999999999998753
Q ss_pred ------------cEEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 150 ------------VFINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 150 ------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
.++.+++... ..+ ..++.+...+.. ....|++|||+|.+... ..+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~--igV----d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-----------A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASN--NGV----DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-----------AWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEeccccc--cCH----HHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-----------HHHHH
Confidence 1222222110 111 223444333322 23469999999988321 12355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
+..++. ++..+++|++|+.+..+.+++++|| ..+.|++|+..+....++..+...+.. ++..+..++..+.| +
T Consensus 140 LKtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 555553 3556788888888999999999999 789999999999999999988765532 22336677777776 5
Q ss_pred HHHHHHHHHH
Q 016044 293 GSDLLEVCKQ 302 (396)
Q Consensus 293 ~~di~~l~~~ 302 (396)
.+++.++++.
T Consensus 214 lR~AlnlLek 223 (605)
T PRK05896 214 LRDGLSILDQ 223 (605)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 94
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.67 E-value=5e-16 Score=140.70 Aligned_cols=177 Identities=23% Similarity=0.308 Sum_probs=125.3
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------EEEE
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------FINV 154 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------~~~i 154 (396)
.+.+-+|+++.|++.+++.|...+.. +...++|||||||||||+.|+++|++++.+ +...
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 45567999999999999999887641 123579999999999999999999988652 3334
Q ss_pred ecccccchhhchHHHHHHHHHHHHHHh---------CC-cEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCC
Q 016044 155 RISNLMSKWFGDAQKLVAAVFSLAYKL---------QP-AIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQ 224 (396)
Q Consensus 155 ~~~~l~~~~~g~~~~~~~~~f~~a~~~---------~p-~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 224 (396)
+.++..+..++. ..+. -|...... .| .|++|||.|.|....+ . .+...++..
T Consensus 95 naSderGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq----~-------aLrr~mE~~---- 156 (346)
T KOG0989|consen 95 NASDERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ----A-------ALRRTMEDF---- 156 (346)
T ss_pred cccccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHHHH----H-------HHHHHHhcc----
Confidence 444444433211 1111 12212111 12 6999999999843322 2 344445542
Q ss_pred CCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHhCCC
Q 016044 225 NARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEE-NIDFDYLAGLCEG 290 (396)
Q Consensus 225 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~-~~~l~~la~~~~g 290 (396)
...+++|..||..+.+...+.+|+ ..+.|+....+.....|+.++..+++.- +-.+..+++.++|
T Consensus 157 s~~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 157 SRTTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred ccceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 456889999999999999999999 8889999999999999999998887763 3336778887776
No 95
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.4e-15 Score=157.82 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=129.7
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
+.+.+|++|+|++.+++.|...+.. + +.++.+||+||+|||||++|+.+|+.++|.
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~----------~---ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS----------G---RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh----------C---CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 4467999999999999999877642 1 225678999999999999999999988652
Q ss_pred ---------------EEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHH
Q 016044 151 ---------------FINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMA 215 (396)
Q Consensus 151 ---------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 215 (396)
++.++.... ..+.+.......++.........|+||||+|.|.. ...+.|++
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~NaLLK 142 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH--GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNALLK 142 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHHHHH
Confidence 122221110 01122222222222222233557999999999832 22335666
Q ss_pred HhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHhCCCCcHH
Q 016044 216 LWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEE-NIDFDYLAGLCEGFTGS 294 (396)
Q Consensus 216 ~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~ 294 (396)
.++. .+..+++|++|+.++.|.+.|++|+ ..+.|..++.++..++|+.++....+.- +..+..++..+.| +.+
T Consensus 143 ~LEE----pP~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR 216 (824)
T PRK07764 143 IVEE----PPEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVR 216 (824)
T ss_pred HHhC----CCCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 6654 3567788888888889999999999 8999999999999999999987666542 2235567777765 555
Q ss_pred HHHHHHHHHH
Q 016044 295 DLLEVCKQAA 304 (396)
Q Consensus 295 di~~l~~~A~ 304 (396)
++.++++...
T Consensus 217 ~Al~eLEKLi 226 (824)
T PRK07764 217 DSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHH
Confidence 6655555433
No 96
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.67 E-value=2.2e-15 Score=144.36 Aligned_cols=178 Identities=26% Similarity=0.396 Sum_probs=126.2
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc-hhhc-h
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS-KWFG-D 166 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~-~~~g-~ 166 (396)
-|+|++++|+.+...+.....+...........+|+++||+||||||||++|+++|..++.+|+.++++.+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 3899999999998777643222222111111234689999999999999999999999999999999887763 5655 4
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 016044 167 AQKLVAAVFSLA-------------------------------------------------------------------- 178 (396)
Q Consensus 167 ~~~~~~~~f~~a-------------------------------------------------------------------- 178 (396)
.+..++.+|..+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 444444444333
Q ss_pred -----------------------------------------------------------------------HHhCCcEEE
Q 016044 179 -----------------------------------------------------------------------YKLQPAIIF 187 (396)
Q Consensus 179 -----------------------------------------------------------------------~~~~p~vl~ 187 (396)
...+.+|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012458999
Q ss_pred EccccccccCCCCCchH-HHHhhHHHHHHHhhccCc------CCCCcEEEEEecC----CCCCCcHHHHhccCCceEeCC
Q 016044 188 IDEVDSFLGQRRTSDHE-ALTNMKTEFMALWDGFTT------DQNARVMVLAATN----RPSELDEAILRRLPQAFEIGM 256 (396)
Q Consensus 188 iDEid~l~~~~~~~~~~-~~~~~~~~ll~~l~~~~~------~~~~~v~vI~atn----~~~~l~~~l~~R~~~~i~~~~ 256 (396)
|||||.++.+..+...+ +...+...|+..++|-.. -+..++++||+.- .|+++-|.|.-||+.++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 99999998765322222 222355577777776332 2245788888764 577788999999999999999
Q ss_pred CCHHHHHHHH
Q 016044 257 PDRKERAQIL 266 (396)
Q Consensus 257 P~~~er~~il 266 (396)
++.++...||
T Consensus 333 L~~edL~rIL 342 (441)
T TIGR00390 333 LTTDDFERIL 342 (441)
T ss_pred CCHHHHHHHh
Confidence 9999999888
No 97
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.67 E-value=1.9e-15 Score=158.57 Aligned_cols=229 Identities=18% Similarity=0.258 Sum_probs=147.2
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc-------
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS------- 161 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~------- 161 (396)
+..|++++|+++.+++...... . ......++|+||||||||++++.+|..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~----~----~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV----N----KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc----c----cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4899999999998877632211 0 112346999999999999999999999999999888765432
Q ss_pred --hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc---------C--cCCCCcE
Q 016044 162 --KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF---------T--TDQNARV 228 (396)
Q Consensus 162 --~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------~--~~~~~~v 228 (396)
.+.|.....+...+..+.. ...|++|||+|.+....+.... ..|+..+|.- . ..+-+++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~-~~~villDEidk~~~~~~g~~~-------~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGV-KNPLFLLDEIDKMSSDMRGDPA-------SALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCC-CCCEEEEEChhhcccccCCCHH-------HHHHHHhccccEEEEecccccccccCCce
Confidence 2344443344333443332 2359999999998655332211 2344444420 0 0123678
Q ss_pred EEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcC-----CCCC---CCCC---HHHHHHh-CCCCcHHHH
Q 016044 229 MVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKG-----EKVE---ENID---FDYLAGL-CEGFTGSDL 296 (396)
Q Consensus 229 ~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~-----~~~~---~~~~---l~~la~~-~~g~s~~di 296 (396)
++|+|+|.. .++++|++|| ..+.+..++.++..+|.+.++.. ..+. -.++ +..+++. +..+-.+.|
T Consensus 467 ~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred EEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 999999987 5999999999 78999999999999999888831 1111 1122 3444432 223333467
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 297 LEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 297 ~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
+..++..+...+.+.+.. .......|+.+++.+.+...+
T Consensus 545 eR~I~~i~r~~l~~~~~~-----~~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 545 EREISKLCRKAVKQLLLD-----KSLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCCceeeecHHHHHHHhCCCc
Confidence 777666555555543311 111235799999999887543
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.67 E-value=1.8e-15 Score=146.77 Aligned_cols=188 Identities=23% Similarity=0.304 Sum_probs=127.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc----------
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV---------- 150 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~---------- 150 (396)
.+.+.+|++++|++.+++.+.+.+.. + ..++.+||+||||+|||++|+++++.+.+.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~----------~---~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN----------G---RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34568999999999999999876642 1 235678999999999999999999986432
Q ss_pred --------------EEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHH
Q 016044 151 --------------FINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTE 212 (396)
Q Consensus 151 --------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 212 (396)
++.++.... .....++.++..+.. ....|++|||+|.+.. ...+.
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~ 136 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAASN------NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNA 136 (355)
T ss_pred CHHHHHHhcCCCCCEEEeecccc------CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHH
Confidence 222322210 111234445444432 2346999999998732 12335
Q ss_pred HHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCC
Q 016044 213 FMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGF 291 (396)
Q Consensus 213 ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~ 291 (396)
++..++. .+..+++|++|+.++.+.+++++|+ ..+.+++|+.++...+++..++..+.. ++..+..++..+.|
T Consensus 137 Ll~~le~----~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEE----PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhC----CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5555543 3456778888888888889999999 789999999999999999988766543 22335566777765
Q ss_pred cHHHHHHHHHHHH
Q 016044 292 TGSDLLEVCKQAA 304 (396)
Q Consensus 292 s~~di~~l~~~A~ 304 (396)
+.+.+.+.++.+.
T Consensus 211 ~~~~a~~~lekl~ 223 (355)
T TIGR02397 211 SLRDALSLLDQLI 223 (355)
T ss_pred ChHHHHHHHHHHH
Confidence 5555555554443
No 99
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=3.5e-15 Score=149.01 Aligned_cols=190 Identities=22% Similarity=0.237 Sum_probs=131.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA------------ 149 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~------------ 149 (396)
+.+.+|++++|++.+++.|...+.. + .-++.+|||||+|+|||++|+++++.+.+
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~----------g---rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDN----------N---RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 3467999999999999999876642 2 23567899999999999999999997632
Q ss_pred ------------cEEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 150 ------------VFINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 150 ------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
.++.++...- . .-..++.+...... ....|++|||+|.+.. ...+.|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~--~----gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NAL 137 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASN--R----GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNAL 137 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccc--c----CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 1222222110 0 11233333332211 1236999999998832 122355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
+..++. ++..+.+|.+|+.+..+.+++++|+ ..++|.+++.++....++..+...+.. .+..+..++..+.| +
T Consensus 138 LK~LEE----pp~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEE----PPSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhh----cCCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 555553 3456777778888899999999998 899999999999999999988766554 23346778887776 7
Q ss_pred HHHHHHHHHHHHHHH
Q 016044 293 GSDLLEVCKQAAYFS 307 (396)
Q Consensus 293 ~~di~~l~~~A~~~a 307 (396)
.+++.++++.+...+
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 778888887766543
No 100
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3.4e-15 Score=149.04 Aligned_cols=193 Identities=23% Similarity=0.254 Sum_probs=126.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-------EEE-
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV-------FIN- 153 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~-------~~~- 153 (396)
..+.+|++++|++.+++.|...+.. -..++.+||+||+|+|||++|+.+|..+++. +-.
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 3467999999999999999877642 1235678999999999999999999987631 100
Q ss_pred Eecccccc----------hhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhc
Q 016044 154 VRISNLMS----------KWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDG 219 (396)
Q Consensus 154 i~~~~l~~----------~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 219 (396)
.+|..+.. ......-..++.+...+. ...+.|++|||+|.+... ..+.++..++.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-----------a~naLLk~LEe 145 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-----------AFNALLKTLEE 145 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-----------HHHHHHHHHhc
Confidence 01110000 000001112333333332 224479999999987321 22345555543
Q ss_pred cCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHH
Q 016044 220 FTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLE 298 (396)
Q Consensus 220 ~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~ 298 (396)
++..+++|.+|+.++.+.+++.+|+ ..+.|++|+.++...++...++..++. ++..+..++..+.| +.+++.+
T Consensus 146 ----pp~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~ 219 (486)
T PRK14953 146 ----PPPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAAS 219 (486)
T ss_pred ----CCCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3445677777777888999999999 689999999999999999998866654 22335677777775 5566666
Q ss_pred HHHHHH
Q 016044 299 VCKQAA 304 (396)
Q Consensus 299 l~~~A~ 304 (396)
+++.+.
T Consensus 220 ~Ldkl~ 225 (486)
T PRK14953 220 LLDQAS 225 (486)
T ss_pred HHHHHH
Confidence 666554
No 101
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.66 E-value=2e-15 Score=149.04 Aligned_cols=195 Identities=23% Similarity=0.276 Sum_probs=142.3
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcE-------EEE-
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF-------INV- 154 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~-------~~i- 154 (396)
.+.+|++++|++.+.+.|...+.. -+-.++.||.||.|||||++||.+|+.+++.- ..|
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 467899999999999999887753 12357899999999999999999999886542 111
Q ss_pred eccccc--------------chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc
Q 016044 155 RISNLM--------------SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF 220 (396)
Q Consensus 155 ~~~~l~--------------~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 220 (396)
.|..+. ...+.+.+.....+........+.|++|||+|.|.. ...+.|++.++
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLE-- 144 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLE-- 144 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhcccc--
Confidence 111111 111222223333222222333457999999998832 23335555444
Q ss_pred CcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCC-CCHHHHHHhCCCCcHHHHHHH
Q 016044 221 TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEEN-IDFDYLAGLCEGFTGSDLLEV 299 (396)
Q Consensus 221 ~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~-~~l~~la~~~~g~s~~di~~l 299 (396)
+++..|.+|.+|..+.+++..+++|| .++.|...+.++....|..++....+..+ ..+..+|+.++| |.+|...+
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 56889999999999999999999999 99999999999999999999988777633 347778888887 78899999
Q ss_pred HHHHHHHH
Q 016044 300 CKQAAYFS 307 (396)
Q Consensus 300 ~~~A~~~a 307 (396)
.++|...+
T Consensus 221 LDq~i~~~ 228 (515)
T COG2812 221 LDQAIAFG 228 (515)
T ss_pred HHHHHHcc
Confidence 88887653
No 102
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=3.1e-15 Score=151.56 Aligned_cols=187 Identities=18% Similarity=0.245 Sum_probs=129.4
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
..+.+|++|+|++.+++.|...+.. + ..++.+||+||+|+|||++|+++|+.+++.
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~----------~---~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES----------N---KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 3467999999999999999877642 1 235679999999999999999999987642
Q ss_pred -------------EEEEecccccchhhchHHHHHHHHHHHH----HHhCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 151 -------------FINVRISNLMSKWFGDAQKLVAAVFSLA----YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 151 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
++.++... . ..-..++.+...+ ......|++|||+|.+... ..+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas--~----~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~-----------a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS--N----TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS-----------AFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc--c----CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-----------HHHHH
Confidence 11121110 0 0112223333222 2234579999999988321 23355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
+..++ .++..+++|++|+.+..+.+++++|+ ..+.|.+++.++...+++..+...... ++..+..++..+.| +
T Consensus 140 LK~LE----epp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIE----EPPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhc----cCCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 55554 34567888888888889999999999 789999999999999999988665543 23346677887776 6
Q ss_pred HHHHHHHHHHHH
Q 016044 293 GSDLLEVCKQAA 304 (396)
Q Consensus 293 ~~di~~l~~~A~ 304 (396)
.+++.++++.+.
T Consensus 214 lR~alslLdkli 225 (563)
T PRK06647 214 VRDAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHHHH
Confidence 667777666543
No 103
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=2.2e-15 Score=143.90 Aligned_cols=159 Identities=19% Similarity=0.263 Sum_probs=111.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
.+.+.+|++++|++++++.+..++. .+ ..++.+||+||||+|||++|++++++.+.+++.+++++
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~----------~~---~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVK----------KG---RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHh----------cC---CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 4556899999999999999987764 11 12566777999999999999999999999999999876
Q ss_pred chhhchHHHHHHHHHHHHH-HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAY-KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE 239 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~-~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 239 (396)
.. .......+........ ...+.+|+|||+|.+.... .. ..+...++.. +.++.+|++||.+..
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~-------~~---~~L~~~le~~----~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD-------AQ---RHLRSFMEAY----SKNCSFIITANNKNG 143 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHH-------HH---HHHHHHHHhc----CCCceEEEEcCChhh
Confidence 22 2222222222111111 1246899999999872111 11 1222333332 345688889999999
Q ss_pred CcHHHHhccCCceEeCCCCHHHHHHHHHHHh
Q 016044 240 LDEAILRRLPQAFEIGMPDRKERAQILKVIL 270 (396)
Q Consensus 240 l~~~l~~R~~~~i~~~~P~~~er~~il~~~l 270 (396)
+.+++++|| ..+.++.|+.+++..+++.++
T Consensus 144 l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 144 IIEPLRSRC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred chHHHHhhc-eEEEeCCCCHHHHHHHHHHHH
Confidence 999999999 789999999999998876543
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.66 E-value=2.8e-15 Score=155.51 Aligned_cols=181 Identities=27% Similarity=0.357 Sum_probs=118.6
Q ss_pred CcccccccChHHHHH---HHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 84 DVEFESIGGLETIKQ---ALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~---~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.+|++++|++.+.. .+++.+. .+ ...+++|+||||||||++|+++++..+.+|+.+++....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~----------~~----~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~ 89 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK----------AD----RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG 89 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh----------cC----CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh
Confidence 578999999999885 4544432 11 235799999999999999999999999999888875321
Q ss_pred chhhchHHHHHHHHHHHHH-----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecC
Q 016044 161 SKWFGDAQKLVAAVFSLAY-----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATN 235 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~-----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 235 (396)
. +.++..+..+. .....+|||||+|.+.... + ..++..++ ...+++|++|+
T Consensus 90 i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q----Q-------daLL~~lE------~g~IiLI~aTT 145 (725)
T PRK13341 90 V-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ----Q-------DALLPWVE------NGTITLIGATT 145 (725)
T ss_pred h-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH----H-------HHHHHHhc------CceEEEEEecC
Confidence 1 11222222221 1245799999999983221 1 12333232 34577777664
Q ss_pred --CCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcC-------CCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHH
Q 016044 236 --RPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKG-------EKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAA 304 (396)
Q Consensus 236 --~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~-------~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~ 304 (396)
....+++++++|+ ..+.|++++.+++..+++..+.. ..+. ++-.++.|++.+.| ..+.+.++++.+.
T Consensus 146 enp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 146 ENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3356889999998 78999999999999999998862 2221 12235667776654 3445555555443
No 105
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.66 E-value=4.1e-15 Score=132.64 Aligned_cols=190 Identities=24% Similarity=0.332 Sum_probs=132.7
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccc
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNL 159 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l 159 (396)
..+.+++++|.+..|+.|.+.. ..|-.+. |.+++||+|++|||||++++++..+. |..++.+.-.++
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt-------~~Fl~G~---pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENT-------EQFLQGL---PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-------HHHHcCC---CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 3689999999999999996654 5555542 57899999999999999999998865 678888876555
Q ss_pred cchhhchHHHHHHHHHHHHH-HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 160 MSKWFGDAQKLVAAVFSLAY-KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~-~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
.. +..++...+ ...+-|||+||+. + .... .-...|...++|.....+.+|++.+|+|+.+
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F--e~~d-------~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F--EEGD-------TEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C--CCCc-------HHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 22 333344333 2234799999864 1 1111 1123777888988888899999999999633
Q ss_pred CCc-----------------------HHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCC-CHH----HHHHhCCC
Q 016044 239 ELD-----------------------EAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENI-DFD----YLAGLCEG 290 (396)
Q Consensus 239 ~l~-----------------------~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~-~l~----~la~~~~g 290 (396)
.++ -+|..||...+.|.+|+.++..+|+++++....+.-+. .+. ..|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 221 14555999999999999999999999999866654221 111 22333445
Q ss_pred CcHHHHHHHHH
Q 016044 291 FTGSDLLEVCK 301 (396)
Q Consensus 291 ~s~~di~~l~~ 301 (396)
.||+--.+.++
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 67765444443
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=5.4e-15 Score=150.51 Aligned_cols=193 Identities=19% Similarity=0.183 Sum_probs=130.7
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR------ 155 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~------ 155 (396)
+.+.+|++|+|++.+++.|...+. .+ +.++.+||+||+|+|||++|+++|+.+++.....+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~----------~g---ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFE----------TG---RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----------cC---CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 446799999999999999987664 22 23678999999999999999999998865421111
Q ss_pred -------c--------ccccchh--hchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 156 -------I--------SNLMSKW--FGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 156 -------~--------~~l~~~~--~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
| .++..-. ....-..++.+...+. .....|++|||+|.+.. ...+.|+
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLL 153 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALL 153 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHH
Confidence 1 0111000 0001123444444332 22347999999999832 1233555
Q ss_pred HHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHhCCCCcH
Q 016044 215 ALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEE-NIDFDYLAGLCEGFTG 293 (396)
Q Consensus 215 ~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~ 293 (396)
+.++. .+..+.+|++|+.++.+.+.+++|| ..+.|..|+.++....++..+......- +..++.++..+.| +.
T Consensus 154 KtLEe----Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dl 227 (598)
T PRK09111 154 KTLEE----PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SV 227 (598)
T ss_pred HHHHh----CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55553 3556778888888888989999999 7899999999999999999987665542 2335667777776 66
Q ss_pred HHHHHHHHHHH
Q 016044 294 SDLLEVCKQAA 304 (396)
Q Consensus 294 ~di~~l~~~A~ 304 (396)
+++.++++.+.
T Consensus 228 r~al~~Ldkli 238 (598)
T PRK09111 228 RDGLSLLDQAI 238 (598)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 107
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.65 E-value=6.5e-15 Score=143.81 Aligned_cols=249 Identities=19% Similarity=0.270 Sum_probs=152.2
Q ss_pred CCCCCccccc-ccChHHHHHHHHHHHHccccChhhhhc--CCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 80 PDHIDVEFES-IGGLETIKQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 80 ~~~~~~~~~~-i~G~~~~k~~l~~~v~~~l~~~~~~~~--~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
|......+++ |+|++.+|+.+...+..+.++-..... .....+..++||+||||||||++|+++|..++.+|+.+++
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 3333445554 899999999997776543332211000 0112245789999999999999999999999999999999
Q ss_pred ccccc-hhhchH-HHHHHHHHHH----HHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccC------
Q 016044 157 SNLMS-KWFGDA-QKLVAAVFSL----AYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFT------ 221 (396)
Q Consensus 157 ~~l~~-~~~g~~-~~~~~~~f~~----a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~------ 221 (396)
+.+.. .|.|.. +..+..++.. .....++||||||||.+..+.... .......+...|+..+++..
T Consensus 142 ~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 142 TTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 88754 466653 3334444332 223467999999999997653211 11111234557777777532
Q ss_pred ---cCCCCcEEEEEecCCCC----------------------------------------------------CCcHHHHh
Q 016044 222 ---TDQNARVMVLAATNRPS----------------------------------------------------ELDEAILR 246 (396)
Q Consensus 222 ---~~~~~~v~vI~atn~~~----------------------------------------------------~l~~~l~~ 246 (396)
..+..++++|.|+|-.. -+.|+|+.
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 11112344555544300 03567777
Q ss_pred ccCCceEeCCCCHHHHHHHHHH----Hhc-------CCCCC---CCCCHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHH
Q 016044 247 RLPQAFEIGMPDRKERAQILKV----ILK-------GEKVE---ENIDFDYLAGL--CEGFTGSDLLEVCKQAAYFSIRE 310 (396)
Q Consensus 247 R~~~~i~~~~P~~~er~~il~~----~l~-------~~~~~---~~~~l~~la~~--~~g~s~~di~~l~~~A~~~a~~~ 310 (396)
|++.++.|.+.+.++..+|+.. .++ ...+. .+-.++.|++. ..++-.+.|+.+++......+.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 9999999999999999999872 222 22222 22225667765 33555667888887777766665
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHH
Q 016044 311 LLDEERKGKPAAAPRPLSRLDLE 333 (396)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~ 333 (396)
.... .......|+.+++.
T Consensus 382 ~p~~-----~~~~~v~I~~~~v~ 399 (412)
T PRK05342 382 LPSR-----EDVEKVVITKEVVE 399 (412)
T ss_pred cccc-----CCCceEEECHHHhc
Confidence 4321 11123457777664
No 108
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=4.4e-15 Score=147.09 Aligned_cols=169 Identities=17% Similarity=0.326 Sum_probs=108.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~ 197 (396)
.++++||||+|+|||+|++++++++ +..++++++.++...+.......-..-|......++.+|+|||++.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 3569999999999999999999975 45788888887765543322111111233222335789999999988544
Q ss_pred CCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC---CcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcC
Q 016044 198 RRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE---LDEAILRRLP--QAFEIGMPDRKERAQILKVILKG 272 (396)
Q Consensus 198 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~---l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~ 272 (396)
... ..+++..++.+.. ....+++++...|.. +.+.+.+||. ..+.+.+|+.+.|..|++..+..
T Consensus 210 ~~~---------q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 TGV---------QTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred HHH---------HHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 211 1133333333322 223455555566654 4578888883 36789999999999999999875
Q ss_pred CCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHH
Q 016044 273 EKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQA 303 (396)
Q Consensus 273 ~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A 303 (396)
..+. ++-.++.||....| +.++|..++..-
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 4333 22236778887775 555666555543
No 109
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.65 E-value=8.3e-15 Score=133.62 Aligned_cols=206 Identities=18% Similarity=0.185 Sum_probs=124.1
Q ss_pred CCccccccc--ChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEecc
Q 016044 83 IDVEFESIG--GLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---AVFINVRIS 157 (396)
Q Consensus 83 ~~~~~~~i~--G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~~~ 157 (396)
+..+|++++ ++..+...+.++... ....+++||||||||||+++++++++.. ..+.+++..
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 356788876 456666666654321 1235799999999999999999998653 345555544
Q ss_pred cccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCc-EEEEEecCC
Q 016044 158 NLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR-VMVLAATNR 236 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-v~vI~atn~ 236 (396)
..... ...+..... +..+|+|||++.+.+.... . ..+...++.... .++ .+++++++.
T Consensus 83 ~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~~~--~-------~~lf~l~n~~~e--~g~~~li~ts~~~ 141 (235)
T PRK08084 83 KRAWF--------VPEVLEGME--QLSLVCIDNIECIAGDELW--E-------MAIFDLYNRILE--SGRTRLLITGDRP 141 (235)
T ss_pred HHhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCHHH--H-------HHHHHHHHHHHH--cCCCeEEEeCCCC
Confidence 32111 111112111 1269999999988543211 1 123333332221 223 345555556
Q ss_pred CCC---CcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 016044 237 PSE---LDEAILRRLP--QAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310 (396)
Q Consensus 237 ~~~---l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~ 310 (396)
|.. +.+++++|+. .++.+.+|+.+++.++++..+....+. ++--++.|++.+.| +.+.+..+++.....++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~- 219 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASIT- 219 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHh-
Confidence 555 5799999985 688999999999999999866544333 22337788888886 556666666553211111
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 311 LLDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
..++||.+.+++++.
T Consensus 220 ------------~~~~it~~~~k~~l~ 234 (235)
T PRK08084 220 ------------AQRKLTIPFVKEILK 234 (235)
T ss_pred ------------cCCCCCHHHHHHHHc
Confidence 125688888777653
No 110
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.65 E-value=2.2e-14 Score=130.42 Aligned_cols=201 Identities=17% Similarity=0.286 Sum_probs=126.3
Q ss_pred CCccccccc--ChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 83 IDVEFESIG--GLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 83 ~~~~~~~i~--G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
.+.+|++++ +.+.+...++.+.. + .....+++|+||+|||||++|++++++. +.+++.+++.
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~-----------~--~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAA-----------G--PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHh-----------c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 356788866 45666666665442 1 2235789999999999999999999865 6678888876
Q ss_pred cccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCc-EEEEEecCC
Q 016044 158 NLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR-VMVLAATNR 236 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-v~vI~atn~ 236 (396)
.+... + .....+.+|+|||+|.+... ... .+...++.... ... +++++++..
T Consensus 80 ~~~~~------------~--~~~~~~~~liiDdi~~l~~~----~~~-------~L~~~~~~~~~--~~~~~vl~~~~~~ 132 (227)
T PRK08903 80 SPLLA------------F--DFDPEAELYAVDDVERLDDA----QQI-------ALFNLFNRVRA--HGQGALLVAGPAA 132 (227)
T ss_pred HhHHH------------H--hhcccCCEEEEeChhhcCch----HHH-------HHHHHHHHHHH--cCCcEEEEeCCCC
Confidence 64321 1 11224579999999987321 111 22333332221 223 344444433
Q ss_pred CC--CCcHHHHhcc--CCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Q 016044 237 PS--ELDEAILRRL--PQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 311 (396)
Q Consensus 237 ~~--~l~~~l~~R~--~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~ 311 (396)
+. .+.+.+++|| ...+.+++|+.+++..+++..+....+. ++-.++.|++.+.| +..++..+++.-...+...
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~- 210 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ- 210 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh-
Confidence 32 3568888887 4688999999999999998877654443 22236667776655 6667777766533222221
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 312 LDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
.++||...+.+++.
T Consensus 211 ------------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 211 ------------KRPVTLPLLREMLA 224 (227)
T ss_pred ------------CCCCCHHHHHHHHh
Confidence 16788888888775
No 111
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.65 E-value=1.5e-14 Score=131.25 Aligned_cols=204 Identities=20% Similarity=0.266 Sum_probs=126.6
Q ss_pred Cccccccc--ChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccc
Q 016044 84 DVEFESIG--GLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISN 158 (396)
Q Consensus 84 ~~~~~~i~--G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 158 (396)
+.+|+++. +.+.+++.+++++. ...+.+++|+||+|||||++|+++++++ +.+++.++|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 35677775 46677888876642 1235789999999999999999999865 56788899887
Q ss_pred ccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 159 LMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 159 l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
+.... ..++... ..+.+|+|||+|.+..... ... .+...++.... ....++++++..+.
T Consensus 77 ~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~--~~~-------~L~~~l~~~~~--~~~~iIits~~~~~ 135 (226)
T TIGR03420 77 LAQAD--------PEVLEGL--EQADLVCLDDVEAIAGQPE--WQE-------ALFHLYNRVRE--AGGRLLIAGRAAPA 135 (226)
T ss_pred HHHhH--------HHHHhhc--ccCCEEEEeChhhhcCChH--HHH-------HHHHHHHHHHH--cCCeEEEECCCChH
Confidence 75432 1222222 1347999999998743210 011 22222322211 11234444443443
Q ss_pred CC---cHHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Q 016044 239 EL---DEAILRRLP--QAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 312 (396)
Q Consensus 239 ~l---~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~ 312 (396)
.+ .+.+.+|+. ..+.+++|+.+++..+++.++...... ++-.+..|+..+.| +.+++.++++.+...+..+.
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~~~- 213 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLAAK- 213 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC-
Confidence 33 278888873 688999999999999999877644332 22235667775544 67788888777654433321
Q ss_pred HHHhcCCCCCCCCCCCHHHHHHHH
Q 016044 313 DEERKGKPAAAPRPLSRLDLEKVL 336 (396)
Q Consensus 313 ~~~~~~~~~~~~~~i~~~d~~~al 336 (396)
..|+.+.+.+.+
T Consensus 214 ------------~~i~~~~~~~~~ 225 (226)
T TIGR03420 214 ------------RKITIPFVKEVL 225 (226)
T ss_pred ------------CCCCHHHHHHHh
Confidence 457776665544
No 112
>PRK06893 DNA replication initiation factor; Validated
Probab=99.64 E-value=4.9e-15 Score=134.65 Aligned_cols=210 Identities=17% Similarity=0.233 Sum_probs=122.3
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISN 158 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 158 (396)
.++.+|++++|.+... .+..+. ..+... ....++||||||||||+|++++|++. +....+++...
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~~~-------~~~~~~----~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDSLR-------KNFIDL----QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCcccccccccCChHH-HHHHHH-------HHhhcc----CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 3467899998765432 111111 111111 12457999999999999999999875 33444444432
Q ss_pred ccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 159 LMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 159 l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
. ......++.... +..+|+|||++.+.+.... ...+...++.... .+..+++++++..|.
T Consensus 78 ~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~---------~~~l~~l~n~~~~-~~~~illits~~~p~ 137 (229)
T PRK06893 78 S--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNEEW---------ELAIFDLFNRIKE-QGKTLLLISADCSPH 137 (229)
T ss_pred h--------hhhhHHHHhhcc--cCCEEEEeChhhhcCChHH---------HHHHHHHHHHHHH-cCCcEEEEeCCCChH
Confidence 1 011112222222 4479999999988543211 1123333333321 122344555666676
Q ss_pred CCc---HHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Q 016044 239 ELD---EAILRRLP--QAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 312 (396)
Q Consensus 239 ~l~---~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~ 312 (396)
.++ +.+.+|+. ..+.+++|+.++|.++++..+....+. ++..++.|++.+.| +.+.+..+++.....++.
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~--- 213 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQ--- 213 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh---
Confidence 554 88999763 588899999999999999888644443 23336778888875 445555555432211111
Q ss_pred HHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 313 DEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 313 ~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
..++||...+++++.
T Consensus 214 ----------~~~~it~~~v~~~L~ 228 (229)
T PRK06893 214 ----------AQRKLTIPFVKEILG 228 (229)
T ss_pred ----------cCCCCCHHHHHHHhc
Confidence 125688888887653
No 113
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.64 E-value=2.3e-14 Score=141.11 Aligned_cols=224 Identities=19% Similarity=0.241 Sum_probs=143.5
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEeccccc
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRISNLM 160 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~~~l~ 160 (396)
..+.++|.++..+.|...+... ... ..+.+++|+||||||||++++.+++++ +..+++++|....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~------~~~----~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPA------LRG----SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH------hCC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 4467899999999998776421 111 124679999999999999999999876 5778899986543
Q ss_pred ch----------hhc--------hHHHHHHHHHHHHHH-hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC
Q 016044 161 SK----------WFG--------DAQKLVAAVFSLAYK-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT 221 (396)
Q Consensus 161 ~~----------~~g--------~~~~~~~~~f~~a~~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 221 (396)
+. ..+ ........+...... ..+.||+|||+|.+...... ..+..++..++...
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~-------~~l~~l~~~~~~~~ 170 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGN-------DVLYSLLRAHEEYP 170 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCc-------hHHHHHHHhhhccC
Confidence 21 001 122233333333332 24579999999998622111 12234444343322
Q ss_pred cCCCCcEEEEEecCCCC---CCcHHHHhccC-CceEeCCCCHHHHHHHHHHHhcCCC---CCCCCCHHHHHHhCCCCc--
Q 016044 222 TDQNARVMVLAATNRPS---ELDEAILRRLP-QAFEIGMPDRKERAQILKVILKGEK---VEENIDFDYLAGLCEGFT-- 292 (396)
Q Consensus 222 ~~~~~~v~vI~atn~~~---~l~~~l~~R~~-~~i~~~~P~~~er~~il~~~l~~~~---~~~~~~l~~la~~~~g~s-- 292 (396)
..++.+|+++|..+ .+++.+.+|+. ..+.|++++.++..++++..+.... .-.+..++.+++.+.+.+
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 33688888888653 56788888774 5689999999999999998875321 112223566676664322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 293 GSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 293 ~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
.+.+..+|..|+..|..+. ...|+.+|+..|+..+..
T Consensus 248 ~r~a~~ll~~a~~~a~~~~------------~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREG------------SRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHcC------------CCCcCHHHHHHHHHHHHH
Confidence 2344466777766655431 256999999999988743
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.1e-14 Score=142.03 Aligned_cols=188 Identities=19% Similarity=0.227 Sum_probs=125.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcE----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF---------- 151 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~---------- 151 (396)
+.+.+|++++|++.+++.+...+.. + ..++++|||||||+|||++|+++++.++++.
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~----------~---~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN----------N---HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 4467999999999999999877642 1 2357899999999999999999999875421
Q ss_pred EEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCc
Q 016044 152 INVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR 227 (396)
Q Consensus 152 ~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 227 (396)
..+..... .......++.++..+.. ..+.+++|||+|.+... ..+.++..++. .+..
T Consensus 78 ~~~~l~~~----~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-----------~~~~ll~~le~----~~~~ 138 (367)
T PRK14970 78 NIFELDAA----SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-----------AFNAFLKTLEE----PPAH 138 (367)
T ss_pred ceEEeccc----cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-----------HHHHHHHHHhC----CCCc
Confidence 11111110 00112334444444322 23479999999987321 12344444443 2345
Q ss_pred EEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHH
Q 016044 228 VMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQA 303 (396)
Q Consensus 228 v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A 303 (396)
.++|++++.+..+.+++.+|+ ..+.+++|+.++...++...+...+.. ++-.++.++..+.| +.+.+.+.++..
T Consensus 139 ~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl 213 (367)
T PRK14970 139 AIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRV 213 (367)
T ss_pred eEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 667777777888999999999 789999999999999999888766653 23346677777665 445555544443
No 115
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.1e-14 Score=143.02 Aligned_cols=186 Identities=18% Similarity=0.206 Sum_probs=122.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
..+.+|++|+|++.+++.|...+.. + +.++.+||+||||+|||++|+++|+.+.+.
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~----------~---~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM----------G---RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh----------C---CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 3467999999999999999876642 1 235779999999999999999999988652
Q ss_pred ---------------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHH
Q 016044 151 ---------------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEA 205 (396)
Q Consensus 151 ---------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~ 205 (396)
++.++.... ..-..++.+...+. .....|++|||+|.+...
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-------- 142 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-------- 142 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH--------
Confidence 111111000 01122333333331 123369999999998321
Q ss_pred HHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHH
Q 016044 206 LTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYL 284 (396)
Q Consensus 206 ~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~l 284 (396)
..+.++..++. .+...++|.+|+.+..+.+++.+|+ ..+.|++++.++....++..++..... ++..++.+
T Consensus 143 ---~~~~LLk~LEe----p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 143 ---AFNAFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred ---HHHHHHHHHhc----CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 12244444442 3445677777777788889999999 789999999999999999888755432 22335667
Q ss_pred HHhCCCCcHHHHHHHHHHH
Q 016044 285 AGLCEGFTGSDLLEVCKQA 303 (396)
Q Consensus 285 a~~~~g~s~~di~~l~~~A 303 (396)
+..+.| +.+.+.+.++.+
T Consensus 215 ~~~s~g-~lr~a~~~L~kl 232 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQV 232 (397)
T ss_pred HHHcCC-CHHHHHHHHHHH
Confidence 777765 445555555443
No 116
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.7e-14 Score=143.21 Aligned_cols=188 Identities=20% Similarity=0.212 Sum_probs=124.9
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------------ 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------------ 150 (396)
.+.+|++|+|++.+++.|...+.. + ..++.+||+||||+|||++|+++|+.+.+.
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~----------~---~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF----------N---RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----------C---CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 467999999999999999877642 1 235779999999999999999999977432
Q ss_pred -------------EEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHh
Q 016044 151 -------------FINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALW 217 (396)
Q Consensus 151 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 217 (396)
++.+++.... ...........+..........|++|||+|.+... ..+.|+..+
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-----------~~n~LLk~l 145 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHR--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-----------AFNSLLKTL 145 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccC--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-----------HHHHHHHHh
Confidence 2222221100 01111111111111112235689999999988321 223555555
Q ss_pred hccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHH
Q 016044 218 DGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDL 296 (396)
Q Consensus 218 ~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di 296 (396)
+. .+..+++|++|+.+..+.+++++|+ ..+.|+.++.++....+...++..+.. ++..++.++..+.| +.+++
T Consensus 146 Ee----p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a 219 (451)
T PRK06305 146 EE----PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDA 219 (451)
T ss_pred hc----CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 53 3456788888888899999999999 789999999999999999888765543 22336677777765 44444
Q ss_pred HHHHHH
Q 016044 297 LEVCKQ 302 (396)
Q Consensus 297 ~~l~~~ 302 (396)
.++++.
T Consensus 220 ~~~Lek 225 (451)
T PRK06305 220 ESLYDY 225 (451)
T ss_pred HHHHHH
Confidence 444443
No 117
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-15 Score=148.81 Aligned_cols=231 Identities=22% Similarity=0.245 Sum_probs=151.4
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccccc
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~ 160 (396)
..+|++|+|.+.....+.+.+. .+ ...+..|||.|.+||||..+|++|.+.+ +.||+.+||..+.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~ak-------r~-----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAK-------RI-----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHH-------hh-----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 4689999999998888876653 33 2346789999999999999999998865 6799999997664
Q ss_pred chh-----hc--------hHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCc
Q 016044 161 SKW-----FG--------DAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR 227 (396)
Q Consensus 161 ~~~-----~g--------~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 227 (396)
... +| ....--...|+.| +.+.||+|||..|. -..+..+.|++.+-.-.--|-....+.+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A---~gGTLFLDEIgemp----l~LQaKLLRVLQEkei~rvG~t~~~~vD 381 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELA---NGGTLFLDEIGEMP----LPLQAKLLRVLQEKEIERVGGTKPIPVD 381 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeec---cCCeEEehhhccCC----HHHHHHHHHHHhhceEEecCCCCceeeE
Confidence 332 11 1111122344444 34899999999883 2223333333222111111223334568
Q ss_pred EEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHH
Q 016044 228 VMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVC 300 (396)
Q Consensus 228 v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~ 300 (396)
|.||+|||+. ..+-.+|..|+ .++.+..|+..+|.+-+..+....--. .-....+...|+++..+..|.
T Consensus 382 VRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k---~s~~~~~~v~~ls~~a~~~L~ 457 (560)
T COG3829 382 VRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDK---FSRRYGRNVKGLSPDALALLL 457 (560)
T ss_pred EEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHH---HHHHcCCCcccCCHHHHHHHH
Confidence 9999999962 35567777798 889999999999988555444211000 001223345678999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CCCCCCCCHHHHH-HHHH
Q 016044 301 KQAAYFSIRELLDEERKGKP-AAAPRPLSRLDLE-KVLT 337 (396)
Q Consensus 301 ~~A~~~a~~~~~~~~~~~~~-~~~~~~i~~~d~~-~al~ 337 (396)
+++|..++|++.+...+... ......|+.+|+- .++.
T Consensus 458 ~y~WPGNVRELeNviER~v~~~~~~~~I~~~~lp~~~l~ 496 (560)
T COG3829 458 RYDWPGNVRELENVIERAVNLVESDGLIDADDLPAFALE 496 (560)
T ss_pred hCCCCchHHHHHHHHHHHHhccCCcceeehhhcchhhhc
Confidence 99999999999887766442 3344447777766 4443
No 118
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.62 E-value=3.6e-15 Score=143.04 Aligned_cols=179 Identities=25% Similarity=0.401 Sum_probs=126.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc-hhhc-h
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS-KWFG-D 166 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~-~~~g-~ 166 (396)
.|+|++++|+.+..++....++..+....+.-..++++||+||||||||++|+++|..++.+|+.++++.+.. .|.| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3899999999998877643222222111111123689999999999999999999999999999999987774 4666 3
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 016044 167 AQKLVAAVFSLA-------------------------------------------------------------------- 178 (396)
Q Consensus 167 ~~~~~~~~f~~a-------------------------------------------------------------------- 178 (396)
.+..++.+|..|
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 344444444333
Q ss_pred --------------------------------------------------------------------H--HhCCcEEEE
Q 016044 179 --------------------------------------------------------------------Y--KLQPAIIFI 188 (396)
Q Consensus 179 --------------------------------------------------------------------~--~~~p~vl~i 188 (396)
. ..+.+|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 124589999
Q ss_pred ccccccccCCCCCchH-HHHhhHHHHHHHhhccCc------CCCCcEEEEEecC----CCCCCcHHHHhccCCceEeCCC
Q 016044 189 DEVDSFLGQRRTSDHE-ALTNMKTEFMALWDGFTT------DQNARVMVLAATN----RPSELDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 189 DEid~l~~~~~~~~~~-~~~~~~~~ll~~l~~~~~------~~~~~v~vI~atn----~~~~l~~~l~~R~~~~i~~~~P 257 (396)
||||.++.+......+ +...+...|+..++|-.. -+..++++||+.- .|+++-|.|.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 9999998764322212 223355677777776322 1245788888763 5777889999999999999999
Q ss_pred CHHHHHHHHH
Q 016044 258 DRKERAQILK 267 (396)
Q Consensus 258 ~~~er~~il~ 267 (396)
+.++...||.
T Consensus 336 ~~~dL~~ILt 345 (443)
T PRK05201 336 TEEDFVRILT 345 (443)
T ss_pred CHHHHHHHhc
Confidence 9999998883
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2.8e-14 Score=145.55 Aligned_cols=189 Identities=18% Similarity=0.213 Sum_probs=123.5
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE---------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN--------- 153 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~--------- 153 (396)
.+.+|++|+|++.+++.|+..+.. + +-++++||+||+|||||++|+.+|+.+.+.-..
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~----------~---ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRM----------D---RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 467999999999999999876542 1 235779999999999999999999988762100
Q ss_pred -Eecc--------------cccchhhch---HHHHHHHHHHHH----HHhCCcEEEEccccccccCCCCCchHHHHhhHH
Q 016044 154 -VRIS--------------NLMSKWFGD---AQKLVAAVFSLA----YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKT 211 (396)
Q Consensus 154 -i~~~--------------~l~~~~~g~---~~~~~~~~f~~a----~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~ 211 (396)
-.|. ++. .+-+. .-..++.+.... ......|++|||+|.+... ..+
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-----------a~n 145 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-----------AFN 145 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-----------HHH
Confidence 0010 000 00010 012233333322 1223479999999988321 123
Q ss_pred HHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC
Q 016044 212 EFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEG 290 (396)
Q Consensus 212 ~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g 290 (396)
.|+..++. .+..+++|++|+.+..+.+++.+|+ ..+.|..++.++....+...+...... ++..++.++..+.|
T Consensus 146 aLLK~LEe----Pp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEE----PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhC----CCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 55555553 3455677777777889999999999 899999999999999999888755432 23346677777775
Q ss_pred CcHHHHHHHHHH
Q 016044 291 FTGSDLLEVCKQ 302 (396)
Q Consensus 291 ~s~~di~~l~~~ 302 (396)
+.+++.+.++.
T Consensus 221 -dlr~al~eLeK 231 (620)
T PRK14954 221 -SMRDAQSILDQ 231 (620)
T ss_pred -CHHHHHHHHHH
Confidence 44444444443
No 120
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.61 E-value=5e-14 Score=143.98 Aligned_cols=217 Identities=18% Similarity=0.231 Sum_probs=137.8
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEEecc
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFINVRIS 157 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~i~~~ 157 (396)
+.|.|.++.+++|..++...+ .. ..+...++|+|+||||||++++.+..++ ...+++++|.
T Consensus 755 D~LPhREeEIeeLasfL~paI------kg---sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGI------KQ---SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHH------hc---CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 679999999999988776322 11 1122345799999999999999998765 2567899996
Q ss_pred cccchhh-----------------chHHHHHHHHHHHHHH--hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhh
Q 016044 158 NLMSKWF-----------------GDAQKLVAAVFSLAYK--LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD 218 (396)
Q Consensus 158 ~l~~~~~-----------------g~~~~~~~~~f~~a~~--~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 218 (396)
.+...+. ......+..+|..... ....||+|||||.|.... + .+ |+.+++
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----Q----DV---LYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----Q----KV---LFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----H----HH---HHHHHH
Confidence 5433210 1123345555554421 224699999999996532 1 11 222222
Q ss_pred ccCcCCCCcEEEEEecCC---CCCCcHHHHhccCC-ceEeCCCCHHHHHHHHHHHhcCCC-CCCCCCHHHHHHhCCCCcH
Q 016044 219 GFTTDQNARVMVLAATNR---PSELDEAILRRLPQ-AFEIGMPDRKERAQILKVILKGEK-VEENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 219 ~~~~~~~~~v~vI~atn~---~~~l~~~l~~R~~~-~i~~~~P~~~er~~il~~~l~~~~-~~~~~~l~~la~~~~g~s~ 293 (396)
... ....++.|||++|. ++.+++.+++||.. .+.|++++.+++.+||+..+.... .-.+..++.+|+.+...+
T Consensus 895 ~~~-~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S- 972 (1164)
T PTZ00112 895 WPT-KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS- 972 (1164)
T ss_pred Hhh-ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC-
Confidence 211 23567999999986 55677888888854 488999999999999999987531 112222556666444322
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 294 SDLLEV---CKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 294 ~di~~l---~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
+|++.+ |+.|+.. . ....|+.+|+.+|+..+..
T Consensus 973 GDARKALDILRrAgEi---------k------egskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 973 GDIRKALQICRKAFEN---------K------RGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred CHHHHHHHHHHHHHhh---------c------CCCccCHHHHHHHHHHHHh
Confidence 355543 3333321 1 1136899999999877643
No 121
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.61 E-value=3.5e-14 Score=135.69 Aligned_cols=174 Identities=23% Similarity=0.305 Sum_probs=116.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CcEEEEe
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-----AVFINVR 155 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~-----~~~~~i~ 155 (396)
.+.+.+|++++|++++++.+..++.. + ...+++|+||||||||++++++++++. .+++.++
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~~----------~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKE----------K----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 44567999999999999999877631 1 124589999999999999999999863 3455555
Q ss_pred cccccchhhchHHHHHHH-HHHHHHH-----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEE
Q 016044 156 ISNLMSKWFGDAQKLVAA-VFSLAYK-----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVM 229 (396)
Q Consensus 156 ~~~l~~~~~g~~~~~~~~-~f~~a~~-----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 229 (396)
+++.... ..+.. +...+.. ..+.+++|||+|.+.... ...+...++.. +....
T Consensus 76 ~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~-----------~~~L~~~le~~----~~~~~ 134 (319)
T PRK00440 76 ASDERGI------DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA-----------QQALRRTMEMY----SQNTR 134 (319)
T ss_pred cccccch------HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH-----------HHHHHHHHhcC----CCCCe
Confidence 4432211 11111 1111211 234699999999883211 12344444432 23456
Q ss_pred EEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC
Q 016044 230 VLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEG 290 (396)
Q Consensus 230 vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g 290 (396)
+|.++|.+..+.+++.+|+ ..+.|++++.++...+++.++...... .+..++.++..+.|
T Consensus 135 lIl~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 135 FILSCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred EEEEeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777788888888899998 679999999999999999998766543 23346777777665
No 122
>PRK08727 hypothetical protein; Validated
Probab=99.60 E-value=8.6e-14 Score=126.78 Aligned_cols=179 Identities=20% Similarity=0.252 Sum_probs=109.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT 200 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~ 200 (396)
..++|+||+|||||++++++++++ +...++++..++.. .+...+... .+..+|+|||++.+......
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQRED 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCChHH
Confidence 569999999999999999997754 55566666544322 222233322 24479999999988544321
Q ss_pred CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec-CCCCCC---cHHHHhcc--CCceEeCCCCHHHHHHHHHHHhcCCC
Q 016044 201 SDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT-NRPSEL---DEAILRRL--PQAFEIGMPDRKERAQILKVILKGEK 274 (396)
Q Consensus 201 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at-n~~~~l---~~~l~~R~--~~~i~~~~P~~~er~~il~~~l~~~~ 274 (396)
.. .++..++.... . +..+|+|+ ..|..+ .+++++|| ...+.+++|+.+++.++++..+....
T Consensus 112 --~~-------~lf~l~n~~~~--~-~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 112 --EV-------ALFDFHNRARA--A-GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred --HH-------HHHHHHHHHHH--c-CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 11 22333333221 1 22344444 456544 69999996 46789999999999999998775433
Q ss_pred CC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHh
Q 016044 275 VE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTT 338 (396)
Q Consensus 275 ~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 338 (396)
+. ++-.++.|+..+.| +.+.+.++++.....+... .+.||.+.+++.+..
T Consensus 180 l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~-------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 180 LALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA-------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred CCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh-------------CCCCCHHHHHHHHhh
Confidence 32 22336778887774 2233333343322212211 146898888887764
No 123
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=3.1e-14 Score=145.93 Aligned_cols=184 Identities=22% Similarity=0.238 Sum_probs=126.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------- 150 (396)
+.+.+|++++|++.+++.|...+.. + +-++++||+||+|+|||++|+++|+.+++.
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~----------~---rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALIS----------N---RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 4467999999999999999887652 1 124679999999999999999999988652
Q ss_pred ---------------EEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHH
Q 016044 151 ---------------FINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKT 211 (396)
Q Consensus 151 ---------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~ 211 (396)
++.++.. ....-..++.+...+.. ....|++|||+|.|.. ...+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~n 139 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFN 139 (620)
T ss_pred ccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHH
Confidence 1112111 11122345555554432 2346999999999832 1234
Q ss_pred HHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC
Q 016044 212 EFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEG 290 (396)
Q Consensus 212 ~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g 290 (396)
.|+..++. .+..+++|++|+.+..+.+.+++|| ..+.|+.++.++....+..++...... ....+..+++.+.|
T Consensus 140 aLLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLEE----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 56666653 3567888888888888999999999 889999999999888888887655433 12236677777776
Q ss_pred CcHHHHHHHHH
Q 016044 291 FTGSDLLEVCK 301 (396)
Q Consensus 291 ~s~~di~~l~~ 301 (396)
- .+++.++++
T Consensus 215 ~-lr~A~~lLe 224 (620)
T PRK14948 215 G-LRDAESLLD 224 (620)
T ss_pred C-HHHHHHHHH
Confidence 3 344444443
No 124
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=3.5e-14 Score=142.82 Aligned_cols=166 Identities=18% Similarity=0.324 Sum_probs=109.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQR 198 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~ 198 (396)
+.++|||++|+|||+|++++++++ +..++++++.++...+...........|... ..+..+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 559999999999999999999975 5678899998887665544332222233322 2246899999999986543
Q ss_pred CCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC-CC---CCcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcC
Q 016044 199 RTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR-PS---ELDEAILRRLP--QAFEIGMPDRKERAQILKVILKG 272 (396)
Q Consensus 199 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~-~~---~l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~ 272 (396)
.. ..+|+..++.+.. ..+-+|| |+|. |. .+++.|++||. ..+.+..|+.+.|.+||+..+..
T Consensus 394 ~t---------qeeLF~l~N~l~e--~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 ST---------QEEFFHTFNTLHN--ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred HH---------HHHHHHHHHHHHh--cCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 21 1134444444332 2223344 5554 33 46789999985 45588999999999999999876
Q ss_pred CCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHH
Q 016044 273 EKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQA 303 (396)
Q Consensus 273 ~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A 303 (396)
..+. ++--++.|+....+ +.++|..++..-
T Consensus 462 r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 462 EQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 5554 22236777877764 455666555543
No 125
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.59 E-value=5.4e-14 Score=144.58 Aligned_cols=227 Identities=19% Similarity=0.254 Sum_probs=136.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcE
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVF 151 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~ 151 (396)
..+.+|++++|++..++.+...+.. ..+.+++|+||||||||++|+++++.. +.+|
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 3467999999999998887654421 124679999999999999999998654 4578
Q ss_pred EEEecccccc-------hhhchHHHH----HHHHHH----------HHHHhCCcEEEEccccccccCCCCCchHHHHhhH
Q 016044 152 INVRISNLMS-------KWFGDAQKL----VAAVFS----------LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMK 210 (396)
Q Consensus 152 ~~i~~~~l~~-------~~~g~~~~~----~~~~f~----------~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~ 210 (396)
+.++|..+.. .+++..... ....+. .......++|||||++.|.... +.
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~----Q~------ 283 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL----QN------ 283 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH----HH------
Confidence 9999876521 111111000 000000 0112345899999999883322 11
Q ss_pred HHHHHHhhcc------------------------CcCCCCcEEEEEec-CCCCCCcHHHHhccCCceEeCCCCHHHHHHH
Q 016044 211 TEFMALWDGF------------------------TTDQNARVMVLAAT-NRPSELDEAILRRLPQAFEIGMPDRKERAQI 265 (396)
Q Consensus 211 ~~ll~~l~~~------------------------~~~~~~~v~vI~at-n~~~~l~~~l~~R~~~~i~~~~P~~~er~~i 265 (396)
.++..++.. ....+..+++|++| +.++.+++++++|| ..+.+++++.++...|
T Consensus 284 -~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~-~~i~~~pls~edi~~I 361 (615)
T TIGR02903 284 -KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRC-AEVFFEPLTPEDIALI 361 (615)
T ss_pred -HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhce-eEEEeCCCCHHHHHHH
Confidence 222222110 01123456676655 56788999999999 5788999999999999
Q ss_pred HHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 266 LKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 266 l~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
++..+...... .+..++.|+..+. .++...+.+..+...+..+...... ......|+.+|+++++..-+
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~----~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGK----ENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhcc----CCCCeeECHHHHHHHhCCCc
Confidence 99998765432 1112344554432 4444334444443333322210000 11235799999999998665
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.7e-14 Score=143.16 Aligned_cols=185 Identities=20% Similarity=0.247 Sum_probs=124.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcE----------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF---------- 151 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~---------- 151 (396)
+.+.+|++|+|++.+++.|...+.. + +.++.+||+||+|+|||++|+.+|+.+++..
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~----------~---~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE----------G---RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh----------C---CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4467999999999999999776642 1 1246789999999999999999999875422
Q ss_pred ---------------EEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHH
Q 016044 152 ---------------INVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTE 212 (396)
Q Consensus 152 ---------------~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 212 (396)
+.++.+.. ..-..++.+...+. .....|++|||+|.|.. ...+.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~na 139 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNA 139 (585)
T ss_pred CHHHHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHH
Confidence 11221100 01112233332222 12347999999998832 12334
Q ss_pred HHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCC
Q 016044 213 FMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGF 291 (396)
Q Consensus 213 ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~ 291 (396)
|+..++. .+..+++|++++..+.+.+.+++|+ ..+.|+.++..+...++...+...+.. ++-.+..++..+.|
T Consensus 140 LLk~LEe----pp~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEE----PPPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhc----CCCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 5555553 2345677777777888889999999 789999999999999999888765543 22236677777776
Q ss_pred cHHHHHHHHHH
Q 016044 292 TGSDLLEVCKQ 302 (396)
Q Consensus 292 s~~di~~l~~~ 302 (396)
+..++.+.++.
T Consensus 214 dlr~al~~Lek 224 (585)
T PRK14950 214 SMRDAENLLQQ 224 (585)
T ss_pred CHHHHHHHHHH
Confidence 66666655554
No 127
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.57 E-value=1.6e-15 Score=147.75 Aligned_cols=223 Identities=22% Similarity=0.246 Sum_probs=147.1
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccc
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMS 161 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~ 161 (396)
..+.+++|.+..++++.+.+.. . .....+|||+|++||||..+|++|.... +.||+.+||..+..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k-------v-----A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~ 205 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK-------V-----APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE 205 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH
Confidence 4678899999999999887742 1 2335789999999999999999999866 46999999977643
Q ss_pred hh-----hchHH-------HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEE
Q 016044 162 KW-----FGDAQ-------KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVM 229 (396)
Q Consensus 162 ~~-----~g~~~-------~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 229 (396)
.. +|... ......|+.| ..++||||||..+.... +..+.|++.+-.-.--|-....+.+|.
T Consensus 206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl~~----Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 206 NLLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPLEL----QVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCHHH----HHHHHHHHHcCeeEecCCCcccceeeE
Confidence 32 11110 0111123333 45899999999883221 222222211100000111222345799
Q ss_pred EEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hCCCCcHHHHHH
Q 016044 230 VLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG----LCEGFTGSDLLE 298 (396)
Q Consensus 230 vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~----~~~g~s~~di~~ 298 (396)
||++||.. ..+-+.|..|+ .++.+..|+..||.+-+-.++..+ +..+++ ...++++..+..
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hf-------l~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHF-------LKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHH-------HHHHHHHcCCCCCCCCHHHHHH
Confidence 99999963 35668888899 899999999999998544433211 112222 345789999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHH
Q 016044 299 VCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEK 334 (396)
Q Consensus 299 l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (396)
|..+.|..+++++.+...+.........++.+|+..
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~~ 386 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILSEGPEIEVEDLPL 386 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcCCccccchhhccc
Confidence 999999999999988777655445555677666553
No 128
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.57 E-value=1e-13 Score=134.80 Aligned_cols=227 Identities=20% Similarity=0.283 Sum_probs=139.6
Q ss_pred ccccc-ccChHHHHHHHHHHHHccccChhhhhcC----CCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 85 VEFES-IGGLETIKQALYELVILPLRRPELFSHG----KLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 85 ~~~~~-i~G~~~~k~~l~~~v~~~l~~~~~~~~~----~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
..+++ |+|++++++.+...+....++-...... .......++||+||||||||++|+++|..++.+|..++++.+
T Consensus 73 ~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 73 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 34433 6999999999977664322221100000 001124689999999999999999999999999999998877
Q ss_pred cc-hhhchH-HHHHHHHHHHH----HHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccCcC-------
Q 016044 160 MS-KWFGDA-QKLVAAVFSLA----YKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFTTD------- 223 (396)
Q Consensus 160 ~~-~~~g~~-~~~~~~~f~~a----~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~------- 223 (396)
.. .|.|.. +..+...+..+ ....++||||||+|.+..+..... ......+.+.|++.++|....
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 53 466653 34444443321 234678999999999976532211 111123555677777665321
Q ss_pred --CCCcEEEEEecCCC---------------------------C-----------------------CCcHHHHhccCCc
Q 016044 224 --QNARVMVLAATNRP---------------------------S-----------------------ELDEAILRRLPQA 251 (396)
Q Consensus 224 --~~~~v~vI~atn~~---------------------------~-----------------------~l~~~l~~R~~~~ 251 (396)
+..++++|.|+|-. + -+.|+|+.|++.+
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~I 312 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVI 312 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeE
Confidence 12356677776640 0 0346777799989
Q ss_pred eEeCCCCHHHHHHHHHHH----hc-------CCCCC---CCCCHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHH
Q 016044 252 FEIGMPDRKERAQILKVI----LK-------GEKVE---ENIDFDYLAGLC--EGFTGSDLLEVCKQAAYFSIREL 311 (396)
Q Consensus 252 i~~~~P~~~er~~il~~~----l~-------~~~~~---~~~~l~~la~~~--~g~s~~di~~l~~~A~~~a~~~~ 311 (396)
+.|.+.+.++..+|+... ++ ...+. .+-.++.|++.+ ..+-.+.|+.+++......+-+.
T Consensus 313 v~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 313 ATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999999988652 21 11221 112255666653 24555677777776666555543
No 129
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=3.8e-14 Score=140.22 Aligned_cols=167 Identities=20% Similarity=0.365 Sum_probs=105.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR 199 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~ 199 (396)
.++++||||+|+|||+|++++++++ +..++++++..+...+.......-...|.... ....+|+|||++.+.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 3679999999999999999999865 67888888876655433222111111233222 2568999999999854332
Q ss_pred CCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC---CCcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCC
Q 016044 200 TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS---ELDEAILRRLP--QAFEIGMPDRKERAQILKVILKGEK 274 (396)
Q Consensus 200 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~---~l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~ 274 (396)
. + .++...++.+.. .+..+|+++...|. .+++++.+||. ..+.+++|+.++|..|++..+....
T Consensus 220 ~--q-------eelf~l~N~l~~--~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 220 T--Q-------EEFFHTFNSLHT--EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred h--H-------HHHHHHHHHHHH--CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 1 1 133333333321 22344555544454 46789999995 6778899999999999999887655
Q ss_pred CC-CCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 275 VE-ENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 275 ~~-~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
+. ++-.++.++....+ +.++|...+..
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~ 316 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTL 316 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 43 22225567776664 33444444433
No 130
>PRK05642 DNA replication initiation factor; Validated
Probab=99.57 E-value=1.2e-13 Score=125.88 Aligned_cols=180 Identities=17% Similarity=0.278 Sum_probs=114.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR 199 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~ 199 (396)
.++++|+||+|||||+|++++++++ +..+++++..++.... ..+..... +..+|+|||++.+.++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCChH
Confidence 3679999999999999999998754 5677788877664321 12222222 236999999998754422
Q ss_pred CCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC---CcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCC
Q 016044 200 TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE---LDEAILRRLP--QAFEIGMPDRKERAQILKVILKGEK 274 (396)
Q Consensus 200 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~---l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~ 274 (396)
...++...++.... ++..++++++..|.. ..+.+++||. ..+.+.+|+.+++..+++..+....
T Consensus 115 ---------~~~~Lf~l~n~~~~--~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 ---------WEEALFHLFNRLRD--SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred ---------HHHHHHHHHHHHHh--cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 11244444444332 345566766665543 3689999984 5667899999999999996664433
Q ss_pred CC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 275 VE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 275 ~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
+. ++-.++.|++...+ +.+.+..+++.-...++. ..++||..-++++|.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~-------------~~~~it~~~~~~~L~ 233 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ-------------AQRKLTIPFLKETLG 233 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH-------------cCCcCCHHHHHHHhc
Confidence 32 22336777887775 555665555543322221 115688777776653
No 131
>PRK06620 hypothetical protein; Validated
Probab=99.57 E-value=2.5e-13 Score=121.81 Aligned_cols=195 Identities=14% Similarity=0.220 Sum_probs=117.1
Q ss_pred CCCcccccccC---hHHHHHHHHHHHHccccChhhhhcCCCCCC-CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc
Q 016044 82 HIDVEFESIGG---LETIKQALYELVILPLRRPELFSHGKLLGP-QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS 157 (396)
Q Consensus 82 ~~~~~~~~i~G---~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~-~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~ 157 (396)
.+..+|++++- ++.+...+.++...+ + ..+ .+.++||||||||||++++++++..+..++. ..
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~ 76 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF----------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DI 76 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc----------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hh
Confidence 34557888654 334555555443210 0 112 2679999999999999999999987754322 11
Q ss_pred cccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 158 NLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
.. . ...+ ....+|+|||+|.+. .. .+...++.+.. .+..++++++..|
T Consensus 77 ~~-------~----~~~~-----~~~d~lliDdi~~~~-------~~-------~lf~l~N~~~e--~g~~ilits~~~p 124 (214)
T PRK06620 77 FF-------N----EEIL-----EKYNAFIIEDIENWQ-------EP-------ALLHIFNIINE--KQKYLLLTSSDKS 124 (214)
T ss_pred hh-------c----hhHH-----hcCCEEEEeccccch-------HH-------HHHHHHHHHHh--cCCEEEEEcCCCc
Confidence 00 0 0111 133799999999541 11 33333333322 3456777777655
Q ss_pred CC--CcHHHHhccCC--ceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SE--LDEAILRRLPQ--AFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 312 (396)
Q Consensus 238 ~~--l~~~l~~R~~~--~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~ 312 (396)
.. + +++++|+.. .+.+.+|+.+++..+++..+....+. ++-.++.|+..+.| +.+.+..+++.....+..
T Consensus 125 ~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~--- 199 (214)
T PRK06620 125 RNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI--- 199 (214)
T ss_pred cccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH---
Confidence 54 5 889999842 68999999999999998888654433 23336778888775 455555555542211111
Q ss_pred HHHhcCCCCCCCCCCCHHHHHHHH
Q 016044 313 DEERKGKPAAAPRPLSRLDLEKVL 336 (396)
Q Consensus 313 ~~~~~~~~~~~~~~i~~~d~~~al 336 (396)
..+.||...+++++
T Consensus 200 ----------~~~~it~~~~~~~l 213 (214)
T PRK06620 200 ----------SKRKITISLVKEVL 213 (214)
T ss_pred ----------cCCCCCHHHHHHHh
Confidence 11568888777765
No 132
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.57 E-value=7e-14 Score=145.81 Aligned_cols=207 Identities=18% Similarity=0.224 Sum_probs=133.6
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc-----hh
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS-----KW 163 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~-----~~ 163 (396)
.|+|++++++.+.+.+..... .+ ....+|...+||+||||||||.+|+++|..++.+++.++|+++.. ..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~--gl---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA--GL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc--cc---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHH
Confidence 489999999999888753211 00 000123456899999999999999999999999999999987643 22
Q ss_pred hchHHHH-----HHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-CcC------CCCcEEEE
Q 016044 164 FGDAQKL-----VAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF-TTD------QNARVMVL 231 (396)
Q Consensus 164 ~g~~~~~-----~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~------~~~~v~vI 231 (396)
+|..... -..+....+....+||||||+|.+.+ .+.+.|+..++.. ..+ +-.++++|
T Consensus 534 iG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-----------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 534 IGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred cCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-----------HHHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 2211000 01122333444558999999999832 2444666666532 111 12467899
Q ss_pred EecCCC-------------------------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcC-------CCCCCCC
Q 016044 232 AATNRP-------------------------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKG-------EKVEENI 279 (396)
Q Consensus 232 ~atn~~-------------------------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~-------~~~~~~~ 279 (396)
+|||.- ..+.|.++.|++.++.|++.+.++..+|+...+.. .++.-.+
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~ 682 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEV 682 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceE
Confidence 999831 12568899999999999999999999999876641 2222122
Q ss_pred C---HHHHHHhCC--CCcHHHHHHHHHHHHHHHHHHH
Q 016044 280 D---FDYLAGLCE--GFTGSDLLEVCKQAAYFSIREL 311 (396)
Q Consensus 280 ~---l~~la~~~~--g~s~~di~~l~~~A~~~a~~~~ 311 (396)
+ ++.|+.... .|-.+.|+.+++.-....+.+.
T Consensus 683 ~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~ 719 (758)
T PRK11034 683 SQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_pred CHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 2 445554322 3445577777777666666554
No 133
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=3e-13 Score=134.29 Aligned_cols=171 Identities=17% Similarity=0.287 Sum_probs=111.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEecccccchhhchHHH---HHHHHHHHHHHhCCcEEEEcccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRISNLMSKWFGDAQK---LVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~~~l~~~~~g~~~~---~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
.++++|||++|+|||+|++++++++ +..++++++.++...+...... .+...... .....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3579999999999999999999854 4678889988877665543322 11111111 124579999999988
Q ss_pred ccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecC-CCC---CCcHHHHhccC--CceEeCCCCHHHHHHHHHH
Q 016044 195 LGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATN-RPS---ELDEAILRRLP--QAFEIGMPDRKERAQILKV 268 (396)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn-~~~---~l~~~l~~R~~--~~i~~~~P~~~er~~il~~ 268 (396)
.++.. ...+|...++.... .+. .+|.|++ .|. .+++.+.+||. ..+.+.+|+.++|.++++.
T Consensus 219 ~~k~~---------~~e~lf~l~N~~~~--~~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 219 SYKEK---------TNEIFFTIFNNFIE--NDK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred cCCHH---------HHHHHHHHHHHHHH--cCC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 54321 11234444443332 222 3444544 444 35789999984 4667899999999999999
Q ss_pred HhcCCCCC---CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 016044 269 ILKGEKVE---ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSI 308 (396)
Q Consensus 269 ~l~~~~~~---~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~ 308 (396)
.+....+. ++-.++.|+..+.| +.+.+..+|......+.
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~ 328 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQ 328 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHh
Confidence 98764431 22236678887776 66778888877654443
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.54 E-value=8.8e-14 Score=125.36 Aligned_cols=195 Identities=23% Similarity=0.346 Sum_probs=114.7
Q ss_pred CCccccccc-C--hHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEE
Q 016044 83 IDVEFESIG-G--LETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINV 154 (396)
Q Consensus 83 ~~~~~~~i~-G--~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i 154 (396)
+..+|++++ | ++.+..........+ -....+++||||+|+|||+|+++++++. +..++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~------------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP------------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST------------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 356888875 4 455555554443321 1123569999999999999999998864 5678899
Q ss_pred ecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec
Q 016044 155 RISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT 234 (396)
Q Consensus 155 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 234 (396)
++.++...+..........-|.... ....+|+|||++.+.++. .....+...++.+.. .++.+|+++.
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~~---------~~q~~lf~l~n~~~~--~~k~li~ts~ 138 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGKQ---------RTQEELFHLFNRLIE--SGKQLILTSD 138 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTHH---------HHHHHHHHHHHHHHH--TTSEEEEEES
T ss_pred cHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCch---------HHHHHHHHHHHHHHh--hCCeEEEEeC
Confidence 9888766544332221111122111 245899999999985331 122344444444432 3344555555
Q ss_pred CCCCC---CcHHHHhccCC--ceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 235 NRPSE---LDEAILRRLPQ--AFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 235 n~~~~---l~~~l~~R~~~--~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
..|.. +++.+.+||.. .+.+.+|+.++|.++++..+....+. ++--.+.|+....+ +.++|..+++.
T Consensus 139 ~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~ 211 (219)
T PF00308_consen 139 RPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNR 211 (219)
T ss_dssp S-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred CCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 55554 56889998755 67889999999999999998765554 22225667777664 55666666554
No 135
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.4e-13 Score=139.34 Aligned_cols=185 Identities=19% Similarity=0.247 Sum_probs=127.4
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------------ 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------------ 150 (396)
.+.+|++|+|++.+++.|...+.. + ..++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~----------~---~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT----------N---KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 357999999999999999877642 1 235779999999999999999999977532
Q ss_pred -------------EEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 151 -------------FINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 151 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
++.+++.+- ..-..++.+...+.. ....|++|||+|.+.. ...+.|
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naL 141 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAF 141 (614)
T ss_pred hHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHH
Confidence 222222110 011233444433322 2346999999999832 123355
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCC-CCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEEN-IDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~-~~l~~la~~~~g~s 292 (396)
+..++. .+..+++|++|+.+..+.+++++|+ ..+.|.+++.++....++..+...++.-+ ..+..|+..+.| +
T Consensus 142 LK~LEe----pp~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-d 215 (614)
T PRK14971 142 LKTLEE----PPSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-G 215 (614)
T ss_pred HHHHhC----CCCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 555553 3456777888877889999999999 88999999999999999998877665422 236778887765 5
Q ss_pred HHHHHHHHHHH
Q 016044 293 GSDLLEVCKQA 303 (396)
Q Consensus 293 ~~di~~l~~~A 303 (396)
.+++.++++..
T Consensus 216 lr~al~~Lekl 226 (614)
T PRK14971 216 MRDALSIFDQV 226 (614)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 136
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=1.1e-13 Score=128.29 Aligned_cols=135 Identities=23% Similarity=0.321 Sum_probs=91.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc------ccchhhchHHH-HHH-------------------HHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN------LMSKWFGDAQK-LVA-------------------AVFS 176 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~------l~~~~~g~~~~-~~~-------------------~~f~ 176 (396)
..++||+||||||||++|+++|+.+|.+++.++|.. +.+.+.+.... ... ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 467999999999999999999999999999998754 22222211111 111 1112
Q ss_pred HHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------c-----CCCCcEEEEEecCCCC-----C
Q 016044 177 LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-------T-----DQNARVMVLAATNRPS-----E 239 (396)
Q Consensus 177 ~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~-----~~~~~v~vI~atn~~~-----~ 239 (396)
.|.. .+++|+|||++.+.+. ..+.|+..++... . ..+.++.+|+|+|+.. .
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-----------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-----------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-----------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 2222 4579999999987322 1223333332211 0 0234678999999753 5
Q ss_pred CcHHHHhccCCceEeCCCCHHHHHHHHHHHh
Q 016044 240 LDEAILRRLPQAFEIGMPDRKERAQILKVIL 270 (396)
Q Consensus 240 l~~~l~~R~~~~i~~~~P~~~er~~il~~~l 270 (396)
+++++++|| ..+.++.|+.++..+|++...
T Consensus 169 l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 689999999 789999999999999998865
No 137
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.52 E-value=7.1e-15 Score=128.55 Aligned_cols=145 Identities=28% Similarity=0.371 Sum_probs=65.5
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----------------
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG----------------- 148 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~----------------- 148 (396)
+|++|+|++.+|+++.-.. .+ .+++||+|||||||||+|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAA-----------aG-----~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~ 64 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAA-----------AG-----GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVA 64 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHH-----------HC-----C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT-
T ss_pred ChhhhcCcHHHHHHHHHHH-----------cC-----CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccc
Confidence 4899999999999995433 33 47999999999999999999988331
Q ss_pred -----------CcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHh
Q 016044 149 -----------AVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALW 217 (396)
Q Consensus 149 -----------~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 217 (396)
.||...+.+.-....+|.........+..| ..+|||+||+..+. .+++..+..-+
T Consensus 65 ~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislA---h~GVLflDE~~ef~-----------~~vld~Lr~pl 130 (206)
T PF01078_consen 65 GLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLA---HRGVLFLDELNEFD-----------RSVLDALRQPL 130 (206)
T ss_dssp --S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGG---TTSEEEECETTTS------------HHHHHHHHHHH
T ss_pred cCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHh---cCCEEEechhhhcC-----------HHHHHHHHHHH
Confidence 233333332222222222111001112222 34899999998872 22333444433
Q ss_pred hc---------cCcCCCCcEEEEEecCCC-----------------------CCCcHHHHhccCCceEeCCCCHH
Q 016044 218 DG---------FTTDQNARVMVLAATNRP-----------------------SELDEAILRRLPQAFEIGMPDRK 260 (396)
Q Consensus 218 ~~---------~~~~~~~~v~vI~atn~~-----------------------~~l~~~l~~R~~~~i~~~~P~~~ 260 (396)
+. .....+.++++|+|+|+- ..+...+++|||..+.++..+.+
T Consensus 131 e~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 131 EDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp HHSBEEEEETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred HCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 32 112235689999999952 14556777788777777665544
No 138
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.51 E-value=1.8e-13 Score=129.91 Aligned_cols=163 Identities=23% Similarity=0.350 Sum_probs=101.7
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-------CCc--EEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-------GAV--FINV 154 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-------~~~--~~~i 154 (396)
+.+|++|+|++++++.+.-.+.. ...+++||+|+||||||++|++++.-+ +++ +..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 56899999999999988543321 112679999999999999999999977 321 1111
Q ss_pred ec-ccc--------c---------------chhhchH--HHHH-HH--HHH--HHHHhCCcEEEEccccccccCCCCCch
Q 016044 155 RI-SNL--------M---------------SKWFGDA--QKLV-AA--VFS--LAYKLQPAIIFIDEVDSFLGQRRTSDH 203 (396)
Q Consensus 155 ~~-~~l--------~---------------~~~~g~~--~~~~-~~--~f~--~a~~~~p~vl~iDEid~l~~~~~~~~~ 203 (396)
.+ .++ . ...+|.. +..+ .. .|. .......++||+||++.+..+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~----- 144 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHI----- 144 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHH-----
Confidence 10 000 0 0011110 0000 00 011 0011234799999999983322
Q ss_pred HHHHhhHHHHHHHhh---------ccCcCCCCcEEEEEecCCCC-CCcHHHHhccCCceEeCCCCH-HHHHHHHHHHhc
Q 016044 204 EALTNMKTEFMALWD---------GFTTDQNARVMVLAATNRPS-ELDEAILRRLPQAFEIGMPDR-KERAQILKVILK 271 (396)
Q Consensus 204 ~~~~~~~~~ll~~l~---------~~~~~~~~~v~vI~atn~~~-~l~~~l~~R~~~~i~~~~P~~-~er~~il~~~l~ 271 (396)
...++..++ |.....+.++++++++|..+ .++++++.||...+.+++|.. ++|.++++....
T Consensus 145 ------q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 145 ------VDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred ------HHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 223333332 22223456899999999755 689999999999999988866 999999988543
No 139
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.51 E-value=1e-12 Score=121.38 Aligned_cols=128 Identities=21% Similarity=0.294 Sum_probs=87.3
Q ss_pred CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC------------CCCCcHHHHhccCC
Q 016044 183 PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR------------PSELDEAILRRLPQ 250 (396)
Q Consensus 183 p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~------------~~~l~~~l~~R~~~ 250 (396)
|+||||||+|.|. -... ..+...++. .-.-++|.+||+ |+-++..|++|+ .
T Consensus 292 pGVLFIDEvHmLD----IE~F-------sFlnrAlEs-----e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-l 354 (450)
T COG1224 292 PGVLFIDEVHMLD----IECF-------SFLNRALES-----ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-L 354 (450)
T ss_pred cceEEEechhhhh----HHHH-------HHHHHHhhc-----ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-e
Confidence 6899999988771 1111 122222322 112366777774 778999999999 8
Q ss_pred ceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCH
Q 016044 251 AFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSR 329 (396)
Q Consensus 251 ~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~ 329 (396)
++...+.+.++.++|++..+....+. ++-.++.|+.....-|-+.--+|+.-|...|-++. ...+..
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg------------~~~V~~ 422 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG------------SKRVEV 422 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC------------CCeeeh
Confidence 89999999999999999999877665 33447777777665555555566666665655542 156888
Q ss_pred HHHHHHHHhc
Q 016044 330 LDLEKVLTTS 339 (396)
Q Consensus 330 ~d~~~al~~~ 339 (396)
+|++.|-.-+
T Consensus 423 ~dVe~a~~lF 432 (450)
T COG1224 423 EDVERAKELF 432 (450)
T ss_pred hHHHHHHHHH
Confidence 9998887655
No 140
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=1.2e-12 Score=125.63 Aligned_cols=193 Identities=18% Similarity=0.150 Sum_probs=122.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-------EEEE
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV-------FINV 154 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~-------~~~i 154 (396)
..+..+++|+|++.+++.+...+. .+ +-++.+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~----------~g---rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~ 83 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR----------EG---KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA 83 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH----------cC---CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence 456799999999999999987654 22 236789999999999999999999987541 1000
Q ss_pred ----ec-----------cccc--chhhch---------HHHHHHHHHHHH----HHhCCcEEEEccccccccCCCCCchH
Q 016044 155 ----RI-----------SNLM--SKWFGD---------AQKLVAAVFSLA----YKLQPAIIFIDEVDSFLGQRRTSDHE 204 (396)
Q Consensus 155 ----~~-----------~~l~--~~~~g~---------~~~~~~~~f~~a----~~~~p~vl~iDEid~l~~~~~~~~~~ 204 (396)
.| +++. ....++ .-..++.+.... ......|++|||+|.+...
T Consensus 84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~------- 156 (351)
T PRK09112 84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN------- 156 (351)
T ss_pred CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-------
Confidence 11 1111 000000 011222222221 2234579999999998321
Q ss_pred HHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 016044 205 ALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYL 284 (396)
Q Consensus 205 ~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~l 284 (396)
..+.+++.++. ++.+.++|..|+.++.+.+.+++|| ..+.|++|+.++...+++........+ +.....+
T Consensus 157 ----aanaLLk~LEE----pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 157 ----AANAILKTLEE----PPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred ----HHHHHHHHHhc----CCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 22356666654 3455666777788899999999999 899999999999999999854322211 1225567
Q ss_pred HHhCCCCcHHHHHHHHHHHHH
Q 016044 285 AGLCEGFTGSDLLEVCKQAAY 305 (396)
Q Consensus 285 a~~~~g~s~~di~~l~~~A~~ 305 (396)
+..+.| ++....++......
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~~ 246 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGGL 246 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCcH
Confidence 777776 44444455544443
No 141
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.51 E-value=9.7e-13 Score=115.55 Aligned_cols=167 Identities=25% Similarity=0.364 Sum_probs=125.1
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
....+.+.+|+|.+.++..|.+ +...|..|. |.++|||+|..|||||+++||+.++. +..+++++-.
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~-------NT~~F~~G~---pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVR-------NTEQFAEGL---PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHH-------HHHHHHcCC---cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 4556899999999999999944 456777653 56889999999999999999998866 5678888876
Q ss_pred cccchhhchHHHHHHHHHHHHHHh-CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 158 NLMSKWFGDAQKLVAAVFSLAYKL-QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a~~~-~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
++.. +..++...+.. ..-|||+||+-- .. . ......+...++|-....+.+|++.+|+|+
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---e~---g----d~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSF---EE---G----DDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCC---CC---C----chHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 6532 23344444322 346999999731 11 1 112235667788888888999999999998
Q ss_pred CCCCcH----------------------HHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC
Q 016044 237 PSELDE----------------------AILRRLPQAFEIGMPDRKERAQILKVILKGEKVE 276 (396)
Q Consensus 237 ~~~l~~----------------------~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~ 276 (396)
...+++ .+-.||...+.|.+++.++..+++.++++...++
T Consensus 184 RHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 184 RHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred cccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 654431 2334999999999999999999999999887776
No 142
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.50 E-value=5.2e-13 Score=127.10 Aligned_cols=163 Identities=23% Similarity=0.287 Sum_probs=104.4
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------CcEEEE
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-------AVFINV 154 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~-------~~~~~i 154 (396)
.+...|++|+|++++|+.|.-.++.| ...|+||.|++|||||++||+++..+. .+|. .
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p--------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~ 75 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP--------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-S 75 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC--------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-C
Confidence 34568999999999999997655432 236899999999999999999977542 2232 0
Q ss_pred ec-------ccccchh-------------------hchHHHHH------HHHHHH---------HHHhCCcEEEEccccc
Q 016044 155 RI-------SNLMSKW-------------------FGDAQKLV------AAVFSL---------AYKLQPAIIFIDEVDS 193 (396)
Q Consensus 155 ~~-------~~l~~~~-------------------~g~~~~~~------~~~f~~---------a~~~~p~vl~iDEid~ 193 (396)
++ +.+.... .+.++..+ ...+.. ......++||+||++.
T Consensus 76 ~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInr 155 (350)
T CHL00081 76 HPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNL 155 (350)
T ss_pred CCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHh
Confidence 00 0000000 01111110 001110 0122358999999999
Q ss_pred cccCCCCCchHHHHhhHHHHHHHhh---------ccCcCCCCcEEEEEecCCCC-CCcHHHHhccCCceEeCCCC-HHHH
Q 016044 194 FLGQRRTSDHEALTNMKTEFMALWD---------GFTTDQNARVMVLAATNRPS-ELDEAILRRLPQAFEIGMPD-RKER 262 (396)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~~~~v~vI~atn~~~-~l~~~l~~R~~~~i~~~~P~-~~er 262 (396)
+....+. .++..++ |.....+.++++|++.|..+ .+++++++||...+.+..|+ .+++
T Consensus 156 L~~~~Q~-----------~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 156 LDDHLVD-----------ILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred CCHHHHH-----------HHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHH
Confidence 8433221 2333332 22223456889999999765 69999999999999999997 6999
Q ss_pred HHHHHHHh
Q 016044 263 AQILKVIL 270 (396)
Q Consensus 263 ~~il~~~l 270 (396)
.+|++...
T Consensus 225 ~~il~~~~ 232 (350)
T CHL00081 225 VKIVEQRT 232 (350)
T ss_pred HHHHHhhh
Confidence 99998864
No 143
>PRK09087 hypothetical protein; Validated
Probab=99.49 E-value=1.5e-12 Score=117.88 Aligned_cols=172 Identities=20% Similarity=0.255 Sum_probs=107.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCch
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH 203 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~ 203 (396)
+.++|+||+|||||+|++++++..+..++.. ..+... .+... ...+|+|||++.+.. ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~~-----------~~~~~---~~~~l~iDDi~~~~~-----~~ 103 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGSD-----------AANAA---AEGPVLIEDIDAGGF-----DE 103 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcchH-----------HHHhh---hcCeEEEECCCCCCC-----CH
Confidence 4599999999999999999998876654433 222111 11111 125899999997621 11
Q ss_pred HHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC---CcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCCCC-C
Q 016044 204 EALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE---LDEAILRRLP--QAFEIGMPDRKERAQILKVILKGEKVE-E 277 (396)
Q Consensus 204 ~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~---l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~~~-~ 277 (396)
+ ++...++.... .+..++++++..|.. ..+++++||. ..+.+.+|+.++|.++++..+....+. +
T Consensus 104 ~-------~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~ 174 (226)
T PRK09087 104 T-------GLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD 174 (226)
T ss_pred H-------HHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 1 33344433332 334566666655542 3688999884 678999999999999999999765443 2
Q ss_pred CCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 278 NIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 278 ~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
+-.++.|++...| +.+.+..+++.-...+.. ..+++|...++++++.+
T Consensus 175 ~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~-------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 175 PHVVYYLVSRMER-SLFAAQTIVDRLDRLALE-------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH-------------hCCCCCHHHHHHHHHhh
Confidence 3336777877774 333333333332222221 12678999999988764
No 144
>PHA02244 ATPase-like protein
Probab=99.48 E-value=4e-13 Score=127.17 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=81.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhh---chHHHHHHHHHHHHHHhCCcEEEEccccccccCCC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWF---GDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR 199 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~---g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~ 199 (396)
..+|||+||||||||++|+++|..++.+|+.++...-..... .........-+..+. ..+++|+|||++.+.+...
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~vq 197 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEAL 197 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHHHH
Confidence 467999999999999999999999999999987421000001 111111112233333 2568999999998743221
Q ss_pred CCchHHHHhhHH-HHHHHhhccCcCCCCcEEEEEecCCC-----------CCCcHHHHhccCCceEeCCCCHHHH
Q 016044 200 TSDHEALTNMKT-EFMALWDGFTTDQNARVMVLAATNRP-----------SELDEAILRRLPQAFEIGMPDRKER 262 (396)
Q Consensus 200 ~~~~~~~~~~~~-~ll~~l~~~~~~~~~~v~vI~atn~~-----------~~l~~~l~~R~~~~i~~~~P~~~er 262 (396)
. .+...+. .++...++. ...+.++.+|+|+|.+ ..+++++++|| ..++++.|+..|.
T Consensus 198 ~----~L~~lLd~r~l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E~ 266 (383)
T PHA02244 198 I----IINSAIANKFFDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIEH 266 (383)
T ss_pred H----HHHHHhccCeEEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHHH
Confidence 1 1111110 011111111 1124678999999973 46799999999 6899999984333
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.48 E-value=1.3e-12 Score=109.24 Aligned_cols=139 Identities=40% Similarity=0.574 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHH
Q 016044 92 GLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQ 168 (396)
Q Consensus 92 G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~ 168 (396)
|.+...+.+...+.. ...++++++||||||||++++.+++.+ +.+++.+++............
T Consensus 2 ~~~~~~~~i~~~~~~--------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 2 GQEEAIEALREALEL--------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred chHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 556666666554431 124689999999999999999999988 888999998776554332221
Q ss_pred HH---HHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC--CCCcEEEEEecCCCC--CCc
Q 016044 169 KL---VAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD--QNARVMVLAATNRPS--ELD 241 (396)
Q Consensus 169 ~~---~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~v~vI~atn~~~--~l~ 241 (396)
.. ............+.+|++||++.+... ....+...+...... .+.++.+|+++|... .++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG-----------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhhhHhHHHHhhccCCCeEEEEeChhhhhHH-----------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 11 112223334456799999999986111 111333333332211 135688889988776 788
Q ss_pred HHHHhccCCceEeC
Q 016044 242 EAILRRLPQAFEIG 255 (396)
Q Consensus 242 ~~l~~R~~~~i~~~ 255 (396)
+.+.+||+..+.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999998777665
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.47 E-value=2.1e-12 Score=136.12 Aligned_cols=205 Identities=19% Similarity=0.236 Sum_probs=133.1
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCC---CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch--
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKL---LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK-- 162 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~---~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~-- 162 (396)
..|+|++++++.+...+... +.+. .+|...+||+||||||||++|+++|..++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 35789999998887776421 1111 1233458999999999999999999999999999999876432
Q ss_pred ---hhchHH-----HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC-------CCCc
Q 016044 163 ---WFGDAQ-----KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD-------QNAR 227 (396)
Q Consensus 163 ---~~g~~~-----~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~ 227 (396)
..|... .....+....+....+||+|||+|.+.+ .+.+.|++.++..... +-.+
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~-----------~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP-----------DIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH-----------HHHHHHHHhhccCeeecCCCcccCCCC
Confidence 111110 0111233334445568999999998732 2334566666543111 1235
Q ss_pred EEEEEecCCCC-------------------------CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC-------CC
Q 016044 228 VMVLAATNRPS-------------------------ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE-------KV 275 (396)
Q Consensus 228 v~vI~atn~~~-------------------------~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~-------~~ 275 (396)
+++|+|||... .+.|.++.|++.++.|.+.+.++..+|++..+... .+
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~ 674 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI 674 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 78999998521 25678889999999999999999999998887521 11
Q ss_pred C---CCCCHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHH
Q 016044 276 E---ENIDFDYLAGL--CEGFTGSDLLEVCKQAAYFSIREL 311 (396)
Q Consensus 276 ~---~~~~l~~la~~--~~g~s~~di~~l~~~A~~~a~~~~ 311 (396)
. ++-..+.|+.. ...+..+.|+.+++.-...++.+.
T Consensus 675 ~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~ 715 (731)
T TIGR02639 675 KLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDE 715 (731)
T ss_pred eEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHH
Confidence 1 11124456654 234556677777777666666553
No 147
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=8.4e-12 Score=120.32 Aligned_cols=218 Identities=17% Similarity=0.241 Sum_probs=141.0
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----EEEEecccccchhh
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV-----FINVRISNLMSKWF 164 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~-----~~~i~~~~l~~~~~ 164 (396)
+.+.+..++.+...+.. .+.. ..|.++++|||||||||.+++.+++++... ++++||....+.+.
T Consensus 19 l~~Re~ei~~l~~~l~~------~~~~----~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 19 LPHREEEINQLASFLAP------ALRG----ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccHHHHHHHHHHHHH------HhcC----CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 89999999999877542 2222 235679999999999999999999977433 89999966543321
Q ss_pred ---------------c-hHHHHHHHHHHHHHH-hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCc
Q 016044 165 ---------------G-DAQKLVAAVFSLAYK-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR 227 (396)
Q Consensus 165 ---------------g-~~~~~~~~~f~~a~~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 227 (396)
| ........+++.... ...-|+++||+|.|..... ..+-.++.... ....+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~----~~~~~ 156 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPG----ENKVK 156 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcc----cccee
Confidence 1 122223333333333 2456899999999976654 22223333222 22567
Q ss_pred EEEEEecCCCC---CCcHHHHhccC-CceEeCCCCHHHHHHHHHHHhcCCCCC---CCCCHHHHHHhCCCC--cHHHHHH
Q 016044 228 VMVLAATNRPS---ELDEAILRRLP-QAFEIGMPDRKERAQILKVILKGEKVE---ENIDFDYLAGLCEGF--TGSDLLE 298 (396)
Q Consensus 228 v~vI~atn~~~---~l~~~l~~R~~-~~i~~~~P~~~er~~il~~~l~~~~~~---~~~~l~~la~~~~g~--s~~di~~ 298 (396)
+.+|+.+|..+ .+++.+.+++. ..|.|++.+.+|...|++......-.. .+.-++.+|...... ..+---.
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aid 236 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAID 236 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHH
Confidence 88999999764 67888988653 457899999999999999988643222 122233344333322 3334446
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 299 VCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 299 l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
+|+.|+..|-++.. ..++.+++..|...+..
T Consensus 237 ilr~A~eiAe~~~~------------~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 237 ILRRAGEIAEREGS------------RKVSEDHVREAQEEIER 267 (366)
T ss_pred HHHHHHHHHHhhCC------------CCcCHHHHHHHHHHhhH
Confidence 78888877776532 56888888888555443
No 148
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-13 Score=132.96 Aligned_cols=164 Identities=24% Similarity=0.308 Sum_probs=107.6
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccccc
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~ 160 (396)
...+..|+|.+..+.++.+.+. ..+ .....|||.|.+||||..+||+|.+.. +.||+.+||..+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~-------~VA-----~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIE-------VVA-----KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHH-------HHh-----cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 5678899999999999887774 222 335789999999999999999999866 5799999997764
Q ss_pred chhhc-hHHHHHHHHHHHHHH--------hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEE
Q 016044 161 SKWFG-DAQKLVAAVFSLAYK--------LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVL 231 (396)
Q Consensus 161 ~~~~g-~~~~~~~~~f~~a~~--------~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 231 (396)
..... +.-...+..|.-|.. .+.+.||+|||..+. -..+..+.|++.+---+--|....-..+|.||
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP----L~lQaKLLRvLQegEieRvG~~r~ikVDVRiI 362 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP----LALQAKLLRVLQEGEIERVGGDRTIKVDVRVI 362 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC----HHHHHHHHHHHhhcceeecCCCceeEEEEEEE
Confidence 43211 011112222322221 145899999999883 23333444433321111112122224578999
Q ss_pred EecCC-------CCCCcHHHHhccCCceEeCCCCHHHHHH
Q 016044 232 AATNR-------PSELDEAILRRLPQAFEIGMPDRKERAQ 264 (396)
Q Consensus 232 ~atn~-------~~~l~~~l~~R~~~~i~~~~P~~~er~~ 264 (396)
+|||+ ...+-..|..|+ .++.+..|+..||..
T Consensus 363 AATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~ 401 (550)
T COG3604 363 AATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPE 401 (550)
T ss_pred eccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCCc
Confidence 99996 234556677788 788889999999876
No 149
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=3.2e-12 Score=123.41 Aligned_cols=186 Identities=19% Similarity=0.168 Sum_probs=119.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEE---------
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI--------- 152 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~--------- 152 (396)
..+.++++|+|++.+++.|...+.. + +-++.+||+||+|+||+++|.++|+.+-+.--
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~----------~---rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS----------G---RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 4567899999999999999876642 2 23678999999999999999999996632110
Q ss_pred ------EEec-----------ccccchhh---ch--------HHHHHHHHHHHH----HHhCCcEEEEccccccccCCCC
Q 016044 153 ------NVRI-----------SNLMSKWF---GD--------AQKLVAAVFSLA----YKLQPAIIFIDEVDSFLGQRRT 200 (396)
Q Consensus 153 ------~i~~-----------~~l~~~~~---g~--------~~~~~~~~f~~a----~~~~p~vl~iDEid~l~~~~~~ 200 (396)
.-.| +++..-.. +. .-..++.+...+ ....+.|++|||+|.+..
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~---- 155 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA---- 155 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH----
Confidence 0001 11100000 00 011233333222 233567999999998822
Q ss_pred CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCC
Q 016044 201 SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENID 280 (396)
Q Consensus 201 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~ 280 (396)
...+.+++.++. .+.+.++|.+|+.++.+.+.+++|+ ..+.|++|+.++..+++....... .+..
T Consensus 156 -------~aanaLLK~LEe----pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~~---~~~~ 220 (365)
T PRK07471 156 -------NAANALLKVLEE----PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPDL---PDDP 220 (365)
T ss_pred -------HHHHHHHHHHhc----CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhcccC---CHHH
Confidence 223356665553 3456778888888999999999999 899999999999999998764221 1111
Q ss_pred HHHHHHhCCCCcHHHHHHHH
Q 016044 281 FDYLAGLCEGFTGSDLLEVC 300 (396)
Q Consensus 281 l~~la~~~~g~s~~di~~l~ 300 (396)
+..++..+.| ++.....++
T Consensus 221 ~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 221 RAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHHcCC-CHHHHHHHh
Confidence 2466777776 444434443
No 150
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=2.9e-12 Score=122.16 Aligned_cols=171 Identities=17% Similarity=0.265 Sum_probs=113.9
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--------EEEEecc
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV--------FINVRIS 157 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~--------~~~i~~~ 157 (396)
+|++|+|++.+++.+...+.. + +.++.+||+||+|+|||++|+++|+.+.+. +..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~----------~---~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK----------N---RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc----------C---CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 699999999999999876631 2 235778999999999999999999976432 2222221
Q ss_pred cccchhhchHHHHHHHHHHHH----HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 158 NLMSKWFGDAQKLVAAVFSLA----YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a----~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
.++..+ -..++.+...+ ...+..|++||++|.+.. ...+.+++.++ +++.++++|.+
T Consensus 69 --~~~~i~--v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LE----epp~~t~~il~ 129 (313)
T PRK05564 69 --NKKSIG--VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIE----EPPKGVFIILL 129 (313)
T ss_pred --cCCCCC--HHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhc----CCCCCeEEEEE
Confidence 111111 11233333322 223447999999988721 12335666555 34566777777
Q ss_pred cCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCc
Q 016044 234 TNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFT 292 (396)
Q Consensus 234 tn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s 292 (396)
|+.++.+.+++++|+ ..+.|++|+.++....+.....+. +......++..+.|-.
T Consensus 130 ~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 130 CENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIP 184 (313)
T ss_pred eCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCH
Confidence 788899999999999 899999999999988887665421 1122445666666633
No 151
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.46 E-value=3.4e-13 Score=128.81 Aligned_cols=194 Identities=19% Similarity=0.213 Sum_probs=122.0
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhh--
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWF-- 164 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~-- 164 (396)
|+|.+...+.+.+.+.. .+ ....+|||+|++||||+++|++|.... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~-------~a-----~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~ 68 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSR-------LA-----PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDS 68 (329)
T ss_pred CCcCCHHHHHHHHHHHH-------Hh-----CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHH
Confidence 45667777776665532 11 224779999999999999999998755 47999999987643221
Q ss_pred ---chHH-------HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-------CcCCCCc
Q 016044 165 ---GDAQ-------KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF-------TTDQNAR 227 (396)
Q Consensus 165 ---g~~~-------~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~ 227 (396)
|... ......|. ...+++||||||+.|....+ ..++..++.. ....+.+
T Consensus 69 ~lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 69 ELFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQ-----------EKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred HHhccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHH-----------HHHHHHHHcCcEEecCCCceeccc
Confidence 1000 00011122 22468999999999843221 1333333221 1112356
Q ss_pred EEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hC-CCCcHHH
Q 016044 228 VMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG----LC-EGFTGSD 295 (396)
Q Consensus 228 v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~----~~-~g~s~~d 295 (396)
+.+|++|+.. ..+.+.|..|+ ..+.+..|+..+|.+-+..++..+ +..++. .. .++++..
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl-~~~~i~lPpLReR~eDI~~L~~~f-------l~~~~~~~~~~~~~~ls~~a 206 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRL-AFDVITLPPLRERQEDIMLLAEHF-------AIRMARELGLPLFPGFTPQA 206 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHh-cchhcCCCchhhhhhhHHHHHHHH-------HHHHHHHhCCCCCCCcCHHH
Confidence 8999999853 34667888888 567788888888887555444311 111221 12 4688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 016044 296 LLEVCKQAAYFSIRELLDEERK 317 (396)
Q Consensus 296 i~~l~~~A~~~a~~~~~~~~~~ 317 (396)
+..|.++.|..+++++.+....
T Consensus 207 ~~~L~~y~WPGNvrEL~n~i~~ 228 (329)
T TIGR02974 207 REQLLEYHWPGNVRELKNVVER 228 (329)
T ss_pred HHHHHhCCCCchHHHHHHHHHH
Confidence 8888888888888888765544
No 152
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.45 E-value=9.8e-13 Score=114.89 Aligned_cols=177 Identities=21% Similarity=0.289 Sum_probs=117.8
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-C----CcEEEEe
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-G----AVFINVR 155 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-~----~~~~~i~ 155 (396)
.+.+..+.||+|+++....+.-. .+.+ .-.+++|.|||||||||-+.++|+++ | --+++++
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~vi-----------a~~g---nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVI-----------AKEG---NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHH-----------HHcC---CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 44567899999999999998543 3322 24679999999999999999999976 3 2355666
Q ss_pred cccccchhhchHHHHHHHHHHHHHH-hCC---cEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEE
Q 016044 156 ISNLMSKWFGDAQKLVAAVFSLAYK-LQP---AIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVL 231 (396)
Q Consensus 156 ~~~l~~~~~g~~~~~~~~~f~~a~~-~~p---~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 231 (396)
.++-.+- ......+. .|..-+- ..| .|+++||.|++ ..+.+++++|...- + .....+.
T Consensus 86 ASdeRGI--DvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSM----T~gAQQAlRRtMEi-------y----S~ttRFa 147 (333)
T KOG0991|consen 86 ASDERGI--DVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSM----TAGAQQALRRTMEI-------Y----SNTTRFA 147 (333)
T ss_pred Ccccccc--HHHHHHHH-HHHHhhccCCCCceeEEEeeccchh----hhHHHHHHHHHHHH-------H----cccchhh
Confidence 6653221 11222222 2322221 122 59999999998 33445555543321 1 2235788
Q ss_pred EecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC
Q 016044 232 AATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEG 290 (396)
Q Consensus 232 ~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g 290 (396)
.+||..+++-+.+.+|| ..+.+...+..+...-+....+.+.+. .+..++.+.-.++|
T Consensus 148 laCN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhhcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 89999999999999999 888888888888887777777666655 22335555554554
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.44 E-value=3.2e-12 Score=122.99 Aligned_cols=172 Identities=23% Similarity=0.403 Sum_probs=114.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEcccccccc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~ 196 (396)
+.+.++||||+|+|||+|++|++++. +..+++++...+...++......-..-|..-. +-.+++|||++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 35679999999999999999999865 34688888888776665554443333455444 447999999999876
Q ss_pred CCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC---cHHHHhccCC--ceEeCCCCHHHHHHHHHHHhc
Q 016044 197 QRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL---DEAILRRLPQ--AFEIGMPDRKERAQILKVILK 271 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l---~~~l~~R~~~--~i~~~~P~~~er~~il~~~l~ 271 (396)
+... ..+|....+.+.. .++-+++.+-..|..+ .+.|++||.. .+.+.+|+.+.|..+|+..+.
T Consensus 190 k~~~---------qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KERT---------QEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred ChhH---------HHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 6433 1244444444432 3334555554556654 5899999865 457899999999999999776
Q ss_pred CCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 016044 272 GEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFS 307 (396)
Q Consensus 272 ~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a 307 (396)
...+. ++--...++..... +.+++..+++.....+
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a 294 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFA 294 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHH
Confidence 55554 23336677777663 5556655554444333
No 154
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.44 E-value=6.1e-13 Score=127.14 Aligned_cols=198 Identities=20% Similarity=0.210 Sum_probs=126.0
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK 162 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~ 162 (396)
-+++++|.+...+.+.+.+.. .+ ....+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~-------~a-----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSR-------LA-----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHH-------Hh-----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 367789999988888776642 22 225789999999999999999998755 469999999886422
Q ss_pred -----hhchHH-------HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------cC
Q 016044 163 -----WFGDAQ-------KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-------TD 223 (396)
Q Consensus 163 -----~~g~~~-------~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~ 223 (396)
++|... ......+ .....++|||||++.+.... ...++..++... ..
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l---~~a~gGtL~l~~i~~L~~~~-----------Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRF---ERADGGTLFLDELATAPMLV-----------QEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHHHccccccccCCcccccCCch---hccCCCeEEeCChhhCCHHH-----------HHHHHHHHhcCcEEeCCCCce
Confidence 111100 0001112 22356899999999984322 113333332211 11
Q ss_pred CCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHh-----CCCC
Q 016044 224 QNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGL-----CEGF 291 (396)
Q Consensus 224 ~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~-----~~g~ 291 (396)
.+.++.+|++|+.. ..+.+.|..|| ..+.+..|+..+|.+-+..++..+ +..++.. ..++
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~f-------l~~~~~~~~~~~~~~~ 209 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHF-------AIQMCRELGLPLFPGF 209 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHH-------HHHHHHHhCCCCCCCC
Confidence 12358899988753 35678888898 667788889888877444433211 1111211 1467
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016044 292 TGSDLLEVCKQAAYFSIRELLDEERK 317 (396)
Q Consensus 292 s~~di~~l~~~A~~~a~~~~~~~~~~ 317 (396)
++..+..|.++.|..+++++.+....
T Consensus 210 s~~al~~L~~y~WPGNvrEL~~vl~~ 235 (326)
T PRK11608 210 TERARETLLNYRWPGNIRELKNVVER 235 (326)
T ss_pred CHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 88888888888888888887665443
No 155
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.42 E-value=5.7e-13 Score=136.04 Aligned_cols=212 Identities=20% Similarity=0.215 Sum_probs=135.1
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccccc
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~ 160 (396)
..+|++++|.+...+.+.+.+.. +. ....+|||+|++||||+++|++|+... +.+|+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~-------~a-----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARV-------VA-----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHH-------Hh-----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 46789999999999988776642 21 235679999999999999999999865 5799999998874
Q ss_pred chhhchHHHHHHHHHHH---------------HHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC----
Q 016044 161 SKWFGDAQKLVAAVFSL---------------AYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT---- 221 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~---------------a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---- 221 (396)
..... ..+|.. .....+++|||||++.+.... ...++..++...
T Consensus 260 ~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~-----------Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 260 ETLLE------SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAF-----------QAKLLRVLQEGEFERV 322 (534)
T ss_pred HHHHH------HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHH-----------HHHHHHHHhcCcEEEC
Confidence 32211 111110 112245899999999984322 113333333211
Q ss_pred ---cCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHH----HHHHhcCCCCCCCCCHHHHHHh
Q 016044 222 ---TDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQI----LKVILKGEKVEENIDFDYLAGL 287 (396)
Q Consensus 222 ---~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~i----l~~~l~~~~~~~~~~l~~la~~ 287 (396)
...+.++.+|++|+.. ..+.+.|..|+ ..+.+..|+..+|.+- +.+++..... .....
T Consensus 323 ~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~-------~~~~~ 394 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRI-NVVPIFLPPLRERREDIPLLAEAFLEKFNR-------ENGRP 394 (534)
T ss_pred CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHh-cCCeeeCCCcccccccHHHHHHHHHHHHHH-------HcCCC
Confidence 0112357899988753 34667888888 6677778887777653 3444432110 00011
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHH
Q 016044 288 CEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLE 333 (396)
Q Consensus 288 ~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (396)
.++++..+..|.++.|..+++++.+.............|+.+|+.
T Consensus 395 -~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 395 -LTITPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSDFS 439 (534)
T ss_pred -CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHCc
Confidence 357777888888888888888776655543333344568888875
No 156
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.42 E-value=3.8e-13 Score=126.04 Aligned_cols=141 Identities=17% Similarity=0.245 Sum_probs=95.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch--hhchHH----------HHHHHHHHHHHHhCCcEEEEcc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK--WFGDAQ----------KLVAAVFSLAYKLQPAIIFIDE 190 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~--~~g~~~----------~~~~~~f~~a~~~~p~vl~iDE 190 (396)
.+++||.||||||||++++.+|..++.+++.+++..-... ..|... ......+..|.. .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999988655443 233211 111122333433 458899999
Q ss_pred ccccccCCCCCchHHHHhhHHHHHHH-----h-h-ccCcCCCCcEEEEEecCCCC------------CCcHHHHhccCCc
Q 016044 191 VDSFLGQRRTSDHEALTNMKTEFMAL-----W-D-GFTTDQNARVMVLAATNRPS------------ELDEAILRRLPQA 251 (396)
Q Consensus 191 id~l~~~~~~~~~~~~~~~~~~ll~~-----l-~-~~~~~~~~~v~vI~atn~~~------------~l~~~l~~R~~~~ 251 (396)
+|...+... ..+ +.++.. + + +........+++|+|+|..+ .+++++++||...
T Consensus 143 in~a~p~~~----~~L----~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~ 214 (327)
T TIGR01650 143 YDAGRPDVM----FVI----QRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIV 214 (327)
T ss_pred hhccCHHHH----HHH----HHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeE
Confidence 998733221 111 122221 0 1 01112345799999999854 4689999999767
Q ss_pred eEeCCCCHHHHHHHHHHHhcC
Q 016044 252 FEIGMPDRKERAQILKVILKG 272 (396)
Q Consensus 252 i~~~~P~~~er~~il~~~l~~ 272 (396)
+.++.|+.++..+|+.....+
T Consensus 215 ~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 215 TTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred eeCCCCCHHHHHHHHHhhccC
Confidence 899999999999999876543
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=3.8e-12 Score=120.53 Aligned_cols=183 Identities=15% Similarity=0.209 Sum_probs=120.1
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc----------EEEEe
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV----------FINVR 155 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~----------~~~i~ 155 (396)
.|++|+|++.+++.+.+.+.. + +-++.+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~----------~---rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ----------N---RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh----------C---CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 589999999999999887642 2 236789999999999999999999875321 11112
Q ss_pred ccccc---------chh--------hc-------h-HHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHH
Q 016044 156 ISNLM---------SKW--------FG-------D-AQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEAL 206 (396)
Q Consensus 156 ~~~l~---------~~~--------~g-------~-~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~ 206 (396)
.+++. ++. .| . .-..++.+...+. .....|++||++|.+..
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~---------- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE---------- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----------
Confidence 22221 000 00 0 0012334433332 23457999999998822
Q ss_pred HhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 016044 207 TNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG 286 (396)
Q Consensus 207 ~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~ 286 (396)
...+.+++.++. ++ +.++|..|+.++.+.+++++|+ ..+.|++|+.++..++++........ +.+...++.
T Consensus 139 -~aaNaLLK~LEE----Pp-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~ 209 (314)
T PRK07399 139 -AAANALLKTLEE----PG-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLA 209 (314)
T ss_pred -HHHHHHHHHHhC----CC-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHH
Confidence 123356666653 33 5577778888999999999999 99999999999999999987542221 122467888
Q ss_pred hCCCCcHHHHHHHHH
Q 016044 287 LCEGFTGSDLLEVCK 301 (396)
Q Consensus 287 ~~~g~s~~di~~l~~ 301 (396)
.+.| +++...++++
T Consensus 210 ~a~G-s~~~al~~l~ 223 (314)
T PRK07399 210 LAQG-SPGAAIANIE 223 (314)
T ss_pred HcCC-CHHHHHHHHH
Confidence 8887 4444444443
No 158
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.41 E-value=5.8e-13 Score=134.08 Aligned_cols=214 Identities=19% Similarity=0.229 Sum_probs=133.3
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccc
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMS 161 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~ 161 (396)
.+|++|+|.+...+.+.+.+. .++. ...+|||+|++||||+++|+++.+.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~-------~~A~-----~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVR-------LYAR-----SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHH-------HHhC-----CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 578999999999998877764 2222 24789999999999999999998754 57999999987743
Q ss_pred hhh-----chHH--------HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-------C
Q 016044 162 KWF-----GDAQ--------KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF-------T 221 (396)
Q Consensus 162 ~~~-----g~~~--------~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------~ 221 (396)
... |..+ .....+|..+ ..++|||||++.|.... +. .++..+... .
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~~----Q~-------~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLPL----QT-------RLLRVLEEREVVRVGGT 342 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHHH----HH-------HHHHHHhcCcEEecCCC
Confidence 221 1100 0011223322 45899999999984322 11 333333211 1
Q ss_pred cCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHH----HHhcCCCCCCCCCHHHHHHhCCC
Q 016044 222 TDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILK----VILKGEKVEENIDFDYLAGLCEG 290 (396)
Q Consensus 222 ~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~----~~l~~~~~~~~~~l~~la~~~~g 290 (396)
...+.++.+|++|+.. ..+.+.+..|+ ..+.+..|+..+|.+-+. +++..... ....+
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~----------~~~~~ 411 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAA----------ALRLP 411 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHH----------HcCCC
Confidence 1113456899998854 23455666677 678888999988887444 33332110 01124
Q ss_pred CcHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCC---CCCCCCCHHHHHHH
Q 016044 291 FTGSDLLE-------VCKQAAYFSIRELLDEERKGKPA---AAPRPLSRLDLEKV 335 (396)
Q Consensus 291 ~s~~di~~-------l~~~A~~~a~~~~~~~~~~~~~~---~~~~~i~~~d~~~a 335 (396)
+++..+.. |.++.|..+++++.+........ .....|+.+|+...
T Consensus 412 ~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 412 DSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred CCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 66666666 78888888888876655442211 12346788876543
No 159
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.40 E-value=4.2e-12 Score=120.92 Aligned_cols=160 Identities=26% Similarity=0.363 Sum_probs=99.8
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-------CCcEE------
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-------GAVFI------ 152 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-------~~~~~------ 152 (396)
.|+.|+|++++|..|.-.+..| ...+++|.|+||+|||+++++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 5889999999999985544321 13679999999999999999999865 22221
Q ss_pred ---EEecc-------------------cccc-----hhhchHH--HHHH-H--HHH--HHHHhCCcEEEEccccccccCC
Q 016044 153 ---NVRIS-------------------NLMS-----KWFGDAQ--KLVA-A--VFS--LAYKLQPAIIFIDEVDSFLGQR 198 (396)
Q Consensus 153 ---~i~~~-------------------~l~~-----~~~g~~~--~~~~-~--~f~--~a~~~~p~vl~iDEid~l~~~~ 198 (396)
..+|. ++.. ...|... ..+. . .|. ...+..+++||+||++.+....
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~ 147 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHL 147 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHH
Confidence 00011 1100 1112110 0000 0 000 1112245899999999983321
Q ss_pred CCCchHHHHhhHHHHHHHhh---------ccCcCCCCcEEEEEecCCCC-CCcHHHHhccCCceEeCCCCH-HHHHHHHH
Q 016044 199 RTSDHEALTNMKTEFMALWD---------GFTTDQNARVMVLAATNRPS-ELDEAILRRLPQAFEIGMPDR-KERAQILK 267 (396)
Q Consensus 199 ~~~~~~~~~~~~~~ll~~l~---------~~~~~~~~~v~vI~atn~~~-~l~~~l~~R~~~~i~~~~P~~-~er~~il~ 267 (396)
...++..++ |.....+.++++|+++|..+ .+++++++||...+.++.|.. ++|.+|++
T Consensus 148 -----------Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~ 216 (337)
T TIGR02030 148 -----------VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVE 216 (337)
T ss_pred -----------HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHH
Confidence 123333332 22222356789999998655 689999999999999998875 88999998
Q ss_pred HHh
Q 016044 268 VIL 270 (396)
Q Consensus 268 ~~l 270 (396)
...
T Consensus 217 ~~~ 219 (337)
T TIGR02030 217 RRT 219 (337)
T ss_pred hhh
Confidence 754
No 160
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.40 E-value=1.3e-12 Score=136.15 Aligned_cols=220 Identities=18% Similarity=0.185 Sum_probs=137.3
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccccc
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~ 160 (396)
..+|++++|.+...+.+.+.+.. +. ....+|||+|++||||+++|+++.+.. +.+|+.++|..+.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~-------~a-----~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~ 388 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQ-------AA-----KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYP 388 (638)
T ss_pred cccccceEECCHHHHHHHHHHHH-------Hh-----CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCC
Confidence 34789999998888877665542 22 224679999999999999999998865 4799999998774
Q ss_pred ch-----hhchH----HHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc-------CC
Q 016044 161 SK-----WFGDA----QKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT-------DQ 224 (396)
Q Consensus 161 ~~-----~~g~~----~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~ 224 (396)
.. .+|.. .......|. ...+++||||||+.+....+ ..++..++.-.. ..
T Consensus 389 ~~~~~~elfg~~~~~~~~~~~g~~~---~a~~GtL~ldei~~l~~~~Q-----------~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 389 DEALAEEFLGSDRTDSENGRLSKFE---LAHGGTLFLEKVEYLSPELQ-----------SALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred hHHHHHHhcCCCCcCccCCCCCcee---ECCCCEEEEcChhhCCHHHH-----------HHHHHHHhcCcEEeCCCCceE
Confidence 32 11210 000000122 23468999999999843221 133333332110 01
Q ss_pred CCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHh---CCCCcHH
Q 016044 225 NARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGL---CEGFTGS 294 (396)
Q Consensus 225 ~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~---~~g~s~~ 294 (396)
+.++.+|+||+.. ..+.+.|..|+ ..+.+..|+..+|.+-+..++..+ +..++.. ..++++.
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~-------l~~~~~~~~~~~~~s~~ 526 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNK-------LRSLEKRFSTRLKIDDD 526 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHH-------HHHHHHHhCCCCCcCHH
Confidence 2367899998863 34566777788 778899999999976444333211 1112211 1257777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 295 DLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 295 di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
.+..|.++.|..+++++.+.............|+.+|+...+.
T Consensus 527 a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 527 ALARLVSYRWPGNDFELRSVIENLALSSDNGRIRLSDLPEHLF 569 (638)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHhCCCCeecHHHCchhhh
Confidence 8888888888888887776655433333445688888766653
No 161
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.40 E-value=6.8e-13 Score=133.48 Aligned_cols=155 Identities=20% Similarity=0.354 Sum_probs=102.6
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHH-----------cCCcEEE
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE-----------SGAVFIN 153 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~-----------~~~~~~~ 153 (396)
.+|++|+|.+...+.+.+.+. .++. ...+|||+|++||||+++|+++... .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~-------~~A~-----s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTIL-------LYAR-----SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHH-------HHhC-----CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 468999999999998887764 2222 2468999999999999999999887 3579999
Q ss_pred Eecccccchhh-----chHHH--------HHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc
Q 016044 154 VRISNLMSKWF-----GDAQK--------LVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF 220 (396)
Q Consensus 154 i~~~~l~~~~~-----g~~~~--------~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 220 (396)
++|..+..... |..+. .-..+|..+ ..++||||||+.|.... +. .++..+...
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~~----Q~-------kLl~~L~e~ 349 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLPL----QT-------RLLRVLEEK 349 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHHH----HH-------HHHhhhhcC
Confidence 99987743321 11000 011233333 45899999999984322 11 333333211
Q ss_pred -------CcCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHH
Q 016044 221 -------TTDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQIL 266 (396)
Q Consensus 221 -------~~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il 266 (396)
....+.++.+|++||.. ..+.+.+..|+ ..+.+..|+..+|.+-+
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI 408 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADI 408 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHH
Confidence 11123467899999853 23445677787 77889999999888633
No 162
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.40 E-value=1.8e-12 Score=131.37 Aligned_cols=216 Identities=17% Similarity=0.204 Sum_probs=130.0
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccc
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNL 159 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l 159 (396)
...+|++++|.+...+.+.+.+. .++. ...+|||+|++||||+++|+++.... +.+|+.++|..+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~-------~~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQAR-------KLAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred ccccccceeECCHHHHHHHHHHH-------HHhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 35689999999988777766553 1222 24679999999999999999997654 468999999887
Q ss_pred cchhh-----chHH-------HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-------
Q 016044 160 MSKWF-----GDAQ-------KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF------- 220 (396)
Q Consensus 160 ~~~~~-----g~~~-------~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 220 (396)
..... |... .....+|.. ...++|||||++.+....+ ..++..+...
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMSPRMQ-----------AKLLRFLNDGTFRRVGE 332 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCCHHHH-----------HHHHHHHhcCCcccCCC
Confidence 53211 1100 000112332 2458999999999843321 1333333221
Q ss_pred CcCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHh----CC
Q 016044 221 TTDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGL----CE 289 (396)
Q Consensus 221 ~~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~----~~ 289 (396)
......++.+|++|+.+ ..+.+.|..|+ ..+.+..|+..+|.+-+..++..+ +..++.. ..
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~f-------l~~~~~~~g~~~~ 404 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELF-------VARFADEQGVPRP 404 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHH-------HHHHHHHcCCCCC
Confidence 01113467899988753 24667788888 668888999888886433322110 1111111 12
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHH
Q 016044 290 GFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDL 332 (396)
Q Consensus 290 g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~ 332 (396)
++++..+..|.++.|..+++++.+.............|+.+|+
T Consensus 405 ~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 405 KLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDI 447 (520)
T ss_pred CcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 4666677777777777777776554443322233345777775
No 163
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.39 E-value=3e-12 Score=132.60 Aligned_cols=160 Identities=24% Similarity=0.409 Sum_probs=103.9
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc------------------
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES------------------ 147 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~------------------ 147 (396)
.|.+|+|++.++..+.-....| ...+|||.|++|||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 4889999999999886544321 12579999999999999999999877
Q ss_pred -----------------CCcEEEEecccccchhhchH--HHHHHH---HHH--HHHHhCCcEEEEccccccccCCCCCch
Q 016044 148 -----------------GAVFINVRISNLMSKWFGDA--QKLVAA---VFS--LAYKLQPAIIFIDEVDSFLGQRRTSDH 203 (396)
Q Consensus 148 -----------------~~~~~~i~~~~l~~~~~g~~--~~~~~~---~f~--~a~~~~p~vl~iDEid~l~~~~~~~~~ 203 (396)
..+|+.+.++......+|.. +..+.. .+. .......++|||||++.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~------ 141 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH------ 141 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH------
Confidence 24666665554333333321 111100 000 011123479999999998432
Q ss_pred HHHHhhHHHHHHHhh---------ccCcCCCCcEEEEEecCCC-CCCcHHHHhccCCceEeCCCC-HHHHHHHHHHHh
Q 016044 204 EALTNMKTEFMALWD---------GFTTDQNARVMVLAATNRP-SELDEAILRRLPQAFEIGMPD-RKERAQILKVIL 270 (396)
Q Consensus 204 ~~~~~~~~~ll~~l~---------~~~~~~~~~v~vI~atn~~-~~l~~~l~~R~~~~i~~~~P~-~~er~~il~~~l 270 (396)
....|+..++ +.....+.++++|+|+|.. ..+.++|++||+..+.++.|. .+++.++++...
T Consensus 142 -----~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 142 -----LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred -----HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 2223444443 1122234678999999964 468899999999888887764 678888887654
No 164
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.39 E-value=1.4e-11 Score=130.99 Aligned_cols=204 Identities=19% Similarity=0.219 Sum_probs=130.5
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCce-EEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch-
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKG-VLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK- 162 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~-vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~- 162 (396)
..|+|++.+++.+.+.+.... .....-..|.+ +||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 368999999999988875321 11100112444 7999999999999999999987 457889998776432
Q ss_pred -----------hhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-cCC------
Q 016044 163 -----------WFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-TDQ------ 224 (396)
Q Consensus 163 -----------~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~------ 224 (396)
|+|..+. ..+....+...++||+|||++.+.+ .+.+.|+..++... .+.
T Consensus 640 ~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-----------~v~~~Llq~ld~g~l~d~~Gr~vd 706 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-----------DVLELFYQVFDKGVMEDGEGREID 706 (852)
T ss_pred hhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-----------HHHHHHHHHhhcceeecCCCcEEe
Confidence 2222111 1123334456679999999987622 23334555554322 111
Q ss_pred CCcEEEEEecCCCC-----------------------------CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC--
Q 016044 225 NARVMVLAATNRPS-----------------------------ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE-- 273 (396)
Q Consensus 225 ~~~v~vI~atn~~~-----------------------------~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~-- 273 (396)
-.+.++|+|||... .+.|++++|++ ++.|.+.+.++..+|+...+...
T Consensus 707 ~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 707 FKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred ccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 14678899988411 14578888995 89999999999999998776431
Q ss_pred ------CCC---CCCCHHHHHHhCCC--CcHHHHHHHHHHHHHHHHHHH
Q 016044 274 ------KVE---ENIDFDYLAGLCEG--FTGSDLLEVCKQAAYFSIREL 311 (396)
Q Consensus 274 ------~~~---~~~~l~~la~~~~g--~s~~di~~l~~~A~~~a~~~~ 311 (396)
.+. ++-..+.|+..+.+ |-.+.++.+++.-...++.+.
T Consensus 786 rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 786 RLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 222 11225566766543 456678888877666666553
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.37 E-value=3.4e-11 Score=128.44 Aligned_cols=206 Identities=18% Similarity=0.221 Sum_probs=125.6
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhcC-CCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch
Q 016044 87 FESIGGLETIKQALYELVILPLRRPELFSHG-KLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK 162 (396)
Q Consensus 87 ~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~-~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~ 162 (396)
...++|++.+++.+...+... .... ...+|...++|+||+|||||++|++++..+ +.+++.++|+++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~ 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh
Confidence 456899999999998877531 1100 001122468999999999999999999876 457899999876432
Q ss_pred h-----hchHHH-----HHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-cC------CC
Q 016044 163 W-----FGDAQK-----LVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-TD------QN 225 (396)
Q Consensus 163 ~-----~g~~~~-----~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~------~~ 225 (396)
. +|.... .-..+....+....+||+|||++.+.+ .+.+.++..++... .. +-
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-----------~v~~~Ll~ile~g~l~d~~gr~vd~ 709 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-----------DVFNILLQVLDDGRLTDGQGRTVDF 709 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-----------HHHHHHHHHHhhCceecCCceEEee
Confidence 1 111000 001122222333448999999997632 22334555554211 11 12
Q ss_pred CcEEEEEecCCC-------------------------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC-------
Q 016044 226 ARVMVLAATNRP-------------------------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE------- 273 (396)
Q Consensus 226 ~~v~vI~atn~~-------------------------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~------- 273 (396)
.+.++|+|||.. ..+.|+|+.|++.++.|.+++.++...|++..+...
T Consensus 710 rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~ 789 (857)
T PRK10865 710 RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEER 789 (857)
T ss_pred cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 345688899862 124578999999999999999999999988777532
Q ss_pred CCCCCCC---HHHHHHhCCCCc----HHHHHHHHHHHHHHHHHHH
Q 016044 274 KVEENID---FDYLAGLCEGFT----GSDLLEVCKQAAYFSIREL 311 (396)
Q Consensus 274 ~~~~~~~---l~~la~~~~g~s----~~di~~l~~~A~~~a~~~~ 311 (396)
...-.++ ++.|+.. ||+ .+.|+.+++.-....+.+.
T Consensus 790 gi~l~is~~al~~L~~~--gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 790 GYEIHISDEALKLLSEN--GYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred CCcCcCCHHHHHHHHHc--CCCccCChHHHHHHHHHHHHHHHHHH
Confidence 2222233 3334432 343 4577777776666555543
No 166
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.37 E-value=1.3e-11 Score=129.55 Aligned_cols=200 Identities=22% Similarity=0.309 Sum_probs=125.7
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccccc
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~ 160 (396)
+.+|++++|.+..++.+.+.+.. ++. ...+|||+|++|||||++|++++... +.+|+.++|..+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~-------~a~-----~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEM-------VAQ-----SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMP 439 (686)
T ss_pred cccccceeecCHHHHHHHHHHHH-------HhC-----CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCC
Confidence 34788999999999888776642 222 24689999999999999999998854 5799999998764
Q ss_pred ch-----hhchHH-------HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------
Q 016044 161 SK-----WFGDAQ-------KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT------- 221 (396)
Q Consensus 161 ~~-----~~g~~~-------~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 221 (396)
.. .+|... ......+. ...+++|||||++.+.... ...++..++...
T Consensus 440 ~~~~~~~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~-----------Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 440 AGLLESDLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLEL-----------QPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hhHhhhhhcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHH-----------HHHHHHHHHhCCEEeCCCC
Confidence 32 112100 01111222 3346899999999984322 113333332211
Q ss_pred cCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hCCC
Q 016044 222 TDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG----LCEG 290 (396)
Q Consensus 222 ~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~----~~~g 290 (396)
...+.++.+|++|+.. ..+...+..|+ ..+.+..|+..+|.+-+..+...+ +..++. ...+
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~-------l~~~~~~~~~~~~~ 577 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAF-------TFKIARRMGRNIDS 577 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHH-------HHHHHHHcCCCCCC
Confidence 1113568899999863 23556677777 678899999999987544333211 111221 1235
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016044 291 FTGSDLLEVCKQAAYFSIRELLDEERK 317 (396)
Q Consensus 291 ~s~~di~~l~~~A~~~a~~~~~~~~~~ 317 (396)
+++..+..|.++.|..+++++.+....
T Consensus 578 ~s~~al~~L~~y~WPGNvrEL~~~i~~ 604 (686)
T PRK15429 578 IPAETLRTLSNMEWPGNVRELENVIER 604 (686)
T ss_pred cCHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 677777777777777777776655443
No 167
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.37 E-value=1.5e-11 Score=123.07 Aligned_cols=147 Identities=25% Similarity=0.341 Sum_probs=92.2
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------------
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---------------- 147 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---------------- 147 (396)
..+|+++.|++.+++.+.-.+ ...++++|.||||||||+++++++..+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa----------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s 251 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA----------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWS 251 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc----------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccccc
Confidence 348999999999988874322 124789999999999999999998632
Q ss_pred ------------CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHH
Q 016044 148 ------------GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMA 215 (396)
Q Consensus 148 ------------~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 215 (396)
..||...+++......+|.........+..| ..++|||||++.+... ....+..
T Consensus 252 ~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~~~-----------~~~~L~~ 317 (499)
T TIGR00368 252 LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFKRS-----------VLDALRE 317 (499)
T ss_pred chhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCCHH-----------HHHHHHH
Confidence 1234444433322222222211111223333 4589999999987321 1223333
Q ss_pred Hhhcc---------CcCCCCcEEEEEecCCC-----C------------------CCcHHHHhccCCceEeCCCCHH
Q 016044 216 LWDGF---------TTDQNARVMVLAATNRP-----S------------------ELDEAILRRLPQAFEIGMPDRK 260 (396)
Q Consensus 216 ~l~~~---------~~~~~~~v~vI~atn~~-----~------------------~l~~~l~~R~~~~i~~~~P~~~ 260 (396)
.++.. ....+.++.+|+++|+. . .+..++++||+..+.++.++..
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 33211 11224679999999963 1 4788999999999999887654
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.36 E-value=4.8e-11 Score=127.72 Aligned_cols=208 Identities=19% Similarity=0.251 Sum_probs=131.4
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcC-CCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHG-KLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW 163 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~-~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~ 163 (396)
..|+|++.+++.+.+.+... .... ...+|...+||+||+|||||++|+++|..+ +.+++.++++.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~ 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHH------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc
Confidence 46999999999998877531 1110 011234568999999999999999999976 4689999988764421
Q ss_pred -----hchHHH-----HHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-cC------CCC
Q 016044 164 -----FGDAQK-----LVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-TD------QNA 226 (396)
Q Consensus 164 -----~g~~~~-----~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~------~~~ 226 (396)
.|.... .-..+....+....+||+|||++.+.+ .+.+.|+..++... .. +-.
T Consensus 639 ~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~-----------~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP-----------DVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred hHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH-----------HHHHHHHHHHhcCceecCCCeEEecC
Confidence 111000 011223333444457999999998732 23335555554221 11 124
Q ss_pred cEEEEEecCCCC-------------------------CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcC-------CC
Q 016044 227 RVMVLAATNRPS-------------------------ELDEAILRRLPQAFEIGMPDRKERAQILKVILKG-------EK 274 (396)
Q Consensus 227 ~v~vI~atn~~~-------------------------~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~-------~~ 274 (396)
+.+||+|||... .+.|.|+.|++.++.|.+++.++..+|+...+.. ..
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~ 787 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERK 787 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567999999621 1346788899999999999999999998876642 11
Q ss_pred CCCCCC---HHHHHHhCC--CCcHHHHHHHHHHHHHHHHHHHH
Q 016044 275 VEENID---FDYLAGLCE--GFTGSDLLEVCKQAAYFSIRELL 312 (396)
Q Consensus 275 ~~~~~~---l~~la~~~~--g~s~~di~~l~~~A~~~a~~~~~ 312 (396)
+.-.++ .+.|++..- .+..+.|+.+++......+.+.+
T Consensus 788 ~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 788 ITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred CeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 112223 445555422 35566888888887777766543
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.36 E-value=2.7e-12 Score=123.20 Aligned_cols=154 Identities=24% Similarity=0.374 Sum_probs=97.3
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchh--hchH
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKW--FGDA 167 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~--~g~~ 167 (396)
++|.++++..+...+. ...++||.||||||||++|+++|..++.+|+.+.|...+... .|..
T Consensus 26 ~~g~~~~~~~~l~a~~----------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALL----------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHH----------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 6777777776644332 136799999999999999999999999999999996543321 1111
Q ss_pred HHHH----HHHHHHHH--HhCC--cEEEEccccccccCCCCCchHHHHhhHHHHHHHhh-------ccC-cCCCCcEEEE
Q 016044 168 QKLV----AAVFSLAY--KLQP--AIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD-------GFT-TDQNARVMVL 231 (396)
Q Consensus 168 ~~~~----~~~f~~a~--~~~p--~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~-------~~~-~~~~~~v~vI 231 (396)
.-.. ...|.... -... +++++|||+...+.-+ +.++..++ +.. ..-+.++++|
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q-----------~aLl~~l~e~~vtv~~~~~~~~~~~f~vi 158 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQ-----------NALLEALEERQVTVPGLTTIRLPPPFIVI 158 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHH-----------HHHHHHHhCcEEEECCcCCcCCCCCCEEE
Confidence 1000 00000000 0000 3999999998743221 23333332 222 3345778999
Q ss_pred EecCC-----CCCCcHHHHhccCCceEeCCC-CHHHHHHHHHHHh
Q 016044 232 AATNR-----PSELDEAILRRLPQAFEIGMP-DRKERAQILKVIL 270 (396)
Q Consensus 232 ~atn~-----~~~l~~~l~~R~~~~i~~~~P-~~~er~~il~~~l 270 (396)
+|+|+ ...+++++++||...+.++.| +..+...++....
T Consensus 159 aT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 159 ATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 99993 446899999999989999999 5555555554444
No 170
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.36 E-value=4.6e-12 Score=128.36 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=126.6
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK 162 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~ 162 (396)
++.+++|.+..++.+.+.+.. .+ ..+.+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~-------~a-----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV-------VA-----ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH-------Hh-----CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 467899999999888877642 22 235789999999999999999999864 579999999887432
Q ss_pred hh-----chHHHH-------HHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------cC
Q 016044 163 WF-----GDAQKL-------VAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-------TD 223 (396)
Q Consensus 163 ~~-----g~~~~~-------~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~ 223 (396)
.. |..... ....|. ...+++|||||||.|.... ...++..++... ..
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~-----------Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLAL-----------QAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHH-----------HHHHHHHHhcCCEeeCCCCcc
Confidence 11 110000 001222 2356899999999984222 113333332211 11
Q ss_pred CCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hCCCCc
Q 016044 224 QNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG----LCEGFT 292 (396)
Q Consensus 224 ~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~----~~~g~s 292 (396)
...++.+|++||.. ..+.+.|..|+ ..+.+..|+..+|.+-+..+...+ +..++. ...+++
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~f-------l~~~~~~~~~~~~~~s 390 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYF-------LEQNRARLGLRSLRLS 390 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHH-------HHHHHHHcCCCCCCCC
Confidence 23468999999863 34677888888 678889999999877444333210 111221 223577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016044 293 GSDLLEVCKQAAYFSIRELLDEERK 317 (396)
Q Consensus 293 ~~di~~l~~~A~~~a~~~~~~~~~~ 317 (396)
+..+..|.++.|..+++++.+....
T Consensus 391 ~~a~~~L~~y~WPGNvrEL~~~i~r 415 (509)
T PRK05022 391 PAAQAALLAYDWPGNVRELEHVISR 415 (509)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 7777788888887777777654443
No 171
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=2.7e-11 Score=115.37 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=98.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc------------------------EEEEecccccchhhchHHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV------------------------FINVRISNLMSKWFGDAQKLVAAVFSLA 178 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a 178 (396)
++.+||+||+|+|||++|+++|+.+.+. ++.+....- ++.. .-..++.+...+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~i--~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKTI--KVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCCC--CHHHHHHHHHHH
Confidence 6789999999999999999999976442 122211100 0001 112333333333
Q ss_pred ----HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEe
Q 016044 179 ----YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEI 254 (396)
Q Consensus 179 ----~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~ 254 (396)
......|++||++|.+.. ...+.+++.++. ++.++++|.+|+.++.+.+.+++|+ ..+.|
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eeeeC
Confidence 233457999999999832 233466666653 4677899999999999999999999 78999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCc
Q 016044 255 GMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFT 292 (396)
Q Consensus 255 ~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s 292 (396)
++|+.++..+.+....... .+.+...++..+.|-.
T Consensus 163 ~~~~~~~~~~~L~~~~~~~---~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 163 PLPSNEESLQWLQQALPES---DERERIELLTLAGGSP 197 (328)
T ss_pred CCcCHHHHHHHHHHhcccC---ChHHHHHHHHHcCCCH
Confidence 9999999998887654211 1222345666677633
No 172
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.4e-11 Score=126.56 Aligned_cols=169 Identities=21% Similarity=0.339 Sum_probs=129.1
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
.-.++-++|.++-++++.+.+. .+..++-+|.|+||+|||.++.-+|... +..++.
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~--------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILS--------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHh--------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 3567779999998888877664 2234667999999999999999999853 567888
Q ss_pred Eeccccc--chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCch-HHHHhhHHHHHHHhhccCcCCCCcEEE
Q 016044 154 VRISNLM--SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH-EALTNMKTEFMALWDGFTTDQNARVMV 230 (396)
Q Consensus 154 i~~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~v~v 230 (396)
++...+. .+|.|+.+..++.+........+.||||||+|.+.+....... ....+++...+. .+.+.+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA---------RGeL~~ 302 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA---------RGELRC 302 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh---------cCCeEE
Confidence 8887775 4688999999999999999888899999999999877654331 112222222222 556888
Q ss_pred EEecCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC
Q 016044 231 LAATNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE 276 (396)
Q Consensus 231 I~atn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~ 276 (396)
||+|...+ .-|+||-||| ..+.+..|+.++-..||+.+-..+...
T Consensus 303 IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~h 352 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAH 352 (786)
T ss_pred EEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99887432 3489999999 899999999999999998876544433
No 173
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.33 E-value=2.7e-12 Score=123.12 Aligned_cols=199 Identities=21% Similarity=0.262 Sum_probs=119.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHH----cCCcEEEEecc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE----SGAVFINVRIS 157 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~----~~~~~~~i~~~ 157 (396)
.....+++++|.+...+++.+.+.. +. ....+||++|++||||+.+|++|+.. .+.||+.+||.
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~-------~a-----p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa 139 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKA-------YA-----PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCA 139 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHh-------hC-----CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHH
Confidence 4457889999999988888776642 22 22478999999999999999999753 36799999998
Q ss_pred cccchhhc-----h-------HHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-----
Q 016044 158 NLMSKWFG-----D-------AQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF----- 220 (396)
Q Consensus 158 ~l~~~~~g-----~-------~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~----- 220 (396)
.+...... . ....-..+|..| ..++||+|||+.+.... ++ .++..++..
T Consensus 140 ~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~~~----Q~-------kLl~~le~g~~~rv 205 (403)
T COG1221 140 AYSENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPPEG----QE-------KLLRVLEEGEYRRV 205 (403)
T ss_pred HhCcCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCHhH----HH-------HHHHHHHcCceEec
Confidence 77544221 1 111122233333 45899999999984332 22 333333321
Q ss_pred --CcCCCCcEEEEEecCC--CCCCcH--HHHhccCCceEeCCCCHHHHHH----HHHHHh----cCCCCCCCCCH----H
Q 016044 221 --TTDQNARVMVLAATNR--PSELDE--AILRRLPQAFEIGMPDRKERAQ----ILKVIL----KGEKVEENIDF----D 282 (396)
Q Consensus 221 --~~~~~~~v~vI~atn~--~~~l~~--~l~~R~~~~i~~~~P~~~er~~----il~~~l----~~~~~~~~~~l----~ 282 (396)
....+.+|.+|+||+. .+.+-. .+.+|. ..+.+..|+.+||.. ++++++ +........+. .
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 2234568999999984 223333 555555 556677777777765 333333 33333322221 1
Q ss_pred HHH-HhCCCCcHHHHHHHHHHHHHHHH
Q 016044 283 YLA-GLCEGFTGSDLLEVCKQAAYFSI 308 (396)
Q Consensus 283 ~la-~~~~g~s~~di~~l~~~A~~~a~ 308 (396)
.+- ....| +-+++++++..++..+-
T Consensus 285 ~L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 285 ALLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 111 11223 33577777777666553
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=5e-11 Score=114.10 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=101.9
Q ss_pred ccccccC-hHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--------------
Q 016044 86 EFESIGG-LETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV-------------- 150 (396)
Q Consensus 86 ~~~~i~G-~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~-------------- 150 (396)
.|++|.| ++.+++.+...+. .+ +.++.+||+||+|+||+++|+++++.+.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----------~~---~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----------KN---RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----------cC---CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4788888 8889999877653 12 236778999999999999999999876332
Q ss_pred ----------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHH
Q 016044 151 ----------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMAL 216 (396)
Q Consensus 151 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 216 (396)
+..+... ++.. .-..++.+..... .....|++|||+|.+.. ...+.|++.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK~ 133 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLKF 133 (329)
T ss_pred HHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHHH
Confidence 1111111 0100 1122333332222 22346999999998732 123356665
Q ss_pred hhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHH
Q 016044 217 WDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKV 268 (396)
Q Consensus 217 l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~ 268 (396)
++ +++..+++|.+|+.+..+.+++++|+ ..++|++|+.++..+.++.
T Consensus 134 LE----EPp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LE----EPSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hc----CCCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 55 34667888888888999999999999 9999999999998777764
No 175
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.33 E-value=4.2e-11 Score=127.79 Aligned_cols=208 Identities=18% Similarity=0.200 Sum_probs=128.1
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch--
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK-- 162 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~-- 162 (396)
+.|+|++.+++.+...+.... ..-....+|...+||+||+|||||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~-----~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~ 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRAR-----VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHT 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHh-----hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccccc
Confidence 458999999999988775311 0000112233457999999999999999999986 467888988776432
Q ss_pred ---hhchHHH-----HHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-cC------CCCc
Q 016044 163 ---WFGDAQK-----LVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-TD------QNAR 227 (396)
Q Consensus 163 ---~~g~~~~-----~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~------~~~~ 227 (396)
..|.... ....+....+....+|++|||+|.+.+ .+.+.|++.++... .+ +-.+
T Consensus 584 ~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~-----------~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 584 VSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP-----------DIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred HHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH-----------HHHHHHHHHhccCceecCCCcEEecCc
Confidence 1111100 011233444444458999999998732 23445666665321 11 1246
Q ss_pred EEEEEecCCCCC-------------------------------------CcHHHHhccCCceEeCCCCHHHHHHHHHHHh
Q 016044 228 VMVLAATNRPSE-------------------------------------LDEAILRRLPQAFEIGMPDRKERAQILKVIL 270 (396)
Q Consensus 228 v~vI~atn~~~~-------------------------------------l~~~l~~R~~~~i~~~~P~~~er~~il~~~l 270 (396)
.++|+|||.... +.|.++.|++.++.|.+.+.++..+|++..+
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 789999884210 2357888999999999999999999988777
Q ss_pred cCC-------CCCCCCC---HHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHH
Q 016044 271 KGE-------KVEENID---FDYLAGLC--EGFTGSDLLEVCKQAAYFSIREL 311 (396)
Q Consensus 271 ~~~-------~~~~~~~---l~~la~~~--~g~s~~di~~l~~~A~~~a~~~~ 311 (396)
... .+.-.++ .+.|+... ..|-.+.|+.+++.-....+.+.
T Consensus 733 ~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~ 785 (821)
T CHL00095 733 KNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEE 785 (821)
T ss_pred HHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 531 1111111 44555542 13445566666666555555443
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.6e-11 Score=123.55 Aligned_cols=205 Identities=20% Similarity=0.287 Sum_probs=133.4
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEecccccch--
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---AVFINVRISNLMSK-- 162 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~~~~l~~~-- 162 (396)
..++|++++...+.+.+.. .+..+ ....+|...+||.||+|+|||-+|+++|..+. ..++.+|+|+++.+
T Consensus 491 ~rViGQd~AV~avs~aIrr--aRaGL---~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--ARAGL---GDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHS 565 (786)
T ss_pred cceeChHHHHHHHHHHHHH--HhcCC---CCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHH
Confidence 3589999999999888752 11111 11123445678899999999999999999886 78999999988654
Q ss_pred ----------hhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-cCCC------
Q 016044 163 ----------WFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-TDQN------ 225 (396)
Q Consensus 163 ----------~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~------ 225 (396)
|+|..+. ..+....++..++||+||||+.. ..++.+-|++.+|... ++..
T Consensus 566 VSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 566 VSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEec
Confidence 2332221 11233334444589999999985 2346667777776432 2222
Q ss_pred CcEEEEEecCCCC----------------------------CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC----
Q 016044 226 ARVMVLAATNRPS----------------------------ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE---- 273 (396)
Q Consensus 226 ~~v~vI~atn~~~----------------------------~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~---- 273 (396)
.+.+||+|||--. .+.|+++.|++.+|.|.+.+.+...+|+...+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3678999998310 23578888999999999999999999998777421
Q ss_pred ---CCC---CCCCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHH
Q 016044 274 ---KVE---ENIDFDYLAGLCE--GFTGSDLLEVCKQAAYFSIRE 310 (396)
Q Consensus 274 ---~~~---~~~~l~~la~~~~--g~s~~di~~l~~~A~~~a~~~ 310 (396)
.+. .+...+.++..+. .|-++-|+.++++-....+.+
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred HhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 222 1112345555443 344556666665555444443
No 177
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.33 E-value=2e-11 Score=107.64 Aligned_cols=142 Identities=17% Similarity=0.217 Sum_probs=93.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc------------------------EEEEecccccchhhchHHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV------------------------FINVRISNLMSKWFGDAQKLVAAVFSLA 178 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a 178 (396)
++.+||+||+|+|||++|+.+++.+... +..+.... ... .-..++.+...+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~~--~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QSI--KVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---CcC--CHHHHHHHHHHH
Confidence 5779999999999999999999986432 12221110 001 112333344433
Q ss_pred HH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEe
Q 016044 179 YK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEI 254 (396)
Q Consensus 179 ~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~ 254 (396)
.. ....|++|||+|.+... ..+.++..++. .+....+|.+++.+..+.+++++|+ ..+.|
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~----~~~~~~~il~~~~~~~l~~~i~sr~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEE----PPPNTLFILITPSPEKLLPTIRSRC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcC----CCCCeEEEEEECChHhChHHHHhhc-EEeeC
Confidence 32 34579999999998321 12345555543 2445677777777889999999999 79999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCC
Q 016044 255 GMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEG 290 (396)
Q Consensus 255 ~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g 290 (396)
++|+.++..++++.. ..+ +..++.++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 999999999988876 122 2235555665554
No 178
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.31 E-value=1.9e-11 Score=114.86 Aligned_cols=68 Identities=38% Similarity=0.534 Sum_probs=46.8
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CcEEEEecccccc
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG--AVFINVRISNLMS 161 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~--~~~~~i~~~~l~~ 161 (396)
...+.++|+.+++++.--.+. +...++ -..+++||.||||||||.+|-++|+++| .||..++++++++
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~-------mIk~~K--~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVD-------MIKEGK--IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHH-------HHHTT----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred eccccccChHHHHHHHHHHHH-------HHhccc--ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 345789999999998754443 222221 1358999999999999999999999997 7888887766533
No 179
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.31 E-value=3.6e-11 Score=116.99 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=86.1
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-------EEEEec---
Q 016044 87 FESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV-------FINVRI--- 156 (396)
Q Consensus 87 ~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~-------~~~i~~--- 156 (396)
++++.+.+...+.+...+. ..++++|+||||||||++|+++|..++.. .+.++.
T Consensus 174 l~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 5667777777666644332 24789999999999999999999977431 222322
Q ss_pred -ccccchhh--chH----HHHHHHHHHHHHHh--CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhh---------
Q 016044 157 -SNLMSKWF--GDA----QKLVAAVFSLAYKL--QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD--------- 218 (396)
Q Consensus 157 -~~l~~~~~--g~~----~~~~~~~f~~a~~~--~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~--------- 218 (396)
.++...+. +.. ......+...|... .|.+|||||+++....+ +..+++..++
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhccccccccccc
Confidence 12221110 000 11222233445432 57899999999863222 1112222221
Q ss_pred ---------ccCcCCCCcEEEEEecCCCC----CCcHHHHhccCCceEeCC
Q 016044 219 ---------GFTTDQNARVMVLAATNRPS----ELDEAILRRLPQAFEIGM 256 (396)
Q Consensus 219 ---------~~~~~~~~~v~vI~atn~~~----~l~~~l~~R~~~~i~~~~ 256 (396)
+-....+.++.||||+|..+ .+|.|++||| ..+++.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 00112367899999999877 6899999999 6677764
No 180
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.31 E-value=2.2e-11 Score=116.56 Aligned_cols=149 Identities=23% Similarity=0.289 Sum_probs=102.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC--------------------
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-------------------- 148 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~-------------------- 148 (396)
+++|.+.+...+..++.. .+ .-++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 567777777777665542 11 1245699999999999999999999876
Q ss_pred ----CcEEEEecccccchhhchHHHHHHHHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc
Q 016044 149 ----AVFINVRISNLMSKWFGDAQKLVAAVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF 220 (396)
Q Consensus 149 ----~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 220 (396)
..++.++.++..... -....++.+...... .+..|++|||+|.+.. ...+.++..+.
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lE-- 134 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLE-- 134 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhc--
Confidence 456777776654431 122334443333322 2347999999999843 22234444444
Q ss_pred CcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHH
Q 016044 221 TTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILK 267 (396)
Q Consensus 221 ~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~ 267 (396)
.++.+..+|.+||.++.+-+.+++|| ..+.|++|+..+.....+
T Consensus 135 --ep~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 --EPPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred --cCCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 34677899999999999999999999 889998876666655554
No 181
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.4e-13 Score=127.54 Aligned_cols=46 Identities=43% Similarity=0.678 Sum_probs=39.3
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHH
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~ 145 (396)
..+|.||.|++..|+.+.- .+.+ .+++|++|||||||||+|+.+..
T Consensus 175 ~~D~~DV~GQ~~AKrAlei-----------AAAG-----gHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 175 APDFKDVKGQEQAKRALEI-----------AAAG-----GHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred CcchhhhcCcHHHHHHHHH-----------HHhc-----CCcEEEecCCCCchHHhhhhhcc
Confidence 4589999999999999943 3334 48999999999999999999876
No 182
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.30 E-value=3.6e-11 Score=120.29 Aligned_cols=215 Identities=19% Similarity=0.243 Sum_probs=133.7
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHcc----cc-------------ChhhhhcC--CCCCCC-ceEEEECCCCCcHHHH
Q 016044 80 PDHIDVEFESIGGLETIKQALYELVILP----LR-------------RPELFSHG--KLLGPQ-KGVLLYGPPGTGKTML 139 (396)
Q Consensus 80 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~----l~-------------~~~~~~~~--~~~~~~-~~vLL~GppGtGKT~l 139 (396)
....+-.|.|+.|-+.+=+.+-.|+... +. ..+++... ..-+|+ +-+||+||||-|||||
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTL 342 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHH
Confidence 3455678999999999888776665421 00 11222211 112233 4578999999999999
Q ss_pred HHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHH
Q 016044 140 AKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMA 215 (396)
Q Consensus 140 a~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 215 (396)
|+.+|+++|..++.+++++-.+.. .....+..+...-. ..+|.+|+|||||--. ... -+++..++.
T Consensus 343 AHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------~~~-Vdvilslv~ 412 (877)
T KOG1969|consen 343 AHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------RAA-VDVILSLVK 412 (877)
T ss_pred HHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc-------HHH-HHHHHHHHH
Confidence 999999999999999998854432 22233333322222 1468999999999642 111 111112211
Q ss_pred ----HhhccCcCC----------CCcEEEEEecCCCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCC
Q 016044 216 ----LWDGFTTDQ----------NARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENI 279 (396)
Q Consensus 216 ----~l~~~~~~~----------~~~v~vI~atn~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~ 279 (396)
+..|-.... .-.-.|||.||..- -|+|+. -+..++.|.+|......+-|+.++..+++. .
T Consensus 413 a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr--~ 488 (877)
T KOG1969|consen 413 ATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR--A 488 (877)
T ss_pred hhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC--C
Confidence 111111000 01124889999643 466654 577899999999999999999999887775 3
Q ss_pred CHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 016044 280 DFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 309 (396)
Q Consensus 280 ~l~~la~~~~g~s~~di~~l~~~A~~~a~~ 309 (396)
+...|+..|+ ++.+||+..++.-...+.+
T Consensus 489 d~~aL~~L~e-l~~~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 489 DSKALNALCE-LTQNDIRSCINTLQFLASN 517 (877)
T ss_pred CHHHHHHHHH-HhcchHHHHHHHHHHHHHh
Confidence 4445555555 4557999888876666553
No 183
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=4.8e-10 Score=104.46 Aligned_cols=192 Identities=18% Similarity=0.276 Sum_probs=114.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC-cEEEE---ec----ccccch---hhc-----h-HHHHHHHH----HHHHHHhC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGA-VFINV---RI----SNLMSK---WFG-----D-AQKLVAAV----FSLAYKLQ 182 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~-~~~~i---~~----~~l~~~---~~g-----~-~~~~~~~~----f~~a~~~~ 182 (396)
..++|+||+|+|||++++.+++.+.. .+..+ ++ .++... ..| . .......+ ........
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45889999999999999999998752 22211 11 011000 001 0 01111111 12223446
Q ss_pred CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC--CCCC----cHHHHhccCCceEeCC
Q 016044 183 PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR--PSEL----DEAILRRLPQAFEIGM 256 (396)
Q Consensus 183 p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~--~~~l----~~~l~~R~~~~i~~~~ 256 (396)
+.+|+|||+|.+... .. ..+ ..+-.........+.++.+... .+.+ ...+.+|+...+.+++
T Consensus 124 ~~vliiDe~~~l~~~-------~~----~~l-~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------LL----EEL-RMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred CeEEEEECcccCCHH-------HH----HHH-HHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 689999999987321 11 111 1222212112223333443332 1111 2356678878899999
Q ss_pred CCHHHHHHHHHHHhcCCCCC-----CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHH
Q 016044 257 PDRKERAQILKVILKGEKVE-----ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLD 331 (396)
Q Consensus 257 P~~~er~~il~~~l~~~~~~-----~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d 331 (396)
.+.++..+++...+...... .+-.++.+++.+.|.. ..|..+|..++..+..+. ...|+.++
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~------------~~~i~~~~ 258 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE------------KREIGGEE 258 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC------------CCCCCHHH
Confidence 99999999999888643321 2234677889999975 569999999988877652 25699999
Q ss_pred HHHHHHhcc
Q 016044 332 LEKVLTTSR 340 (396)
Q Consensus 332 ~~~al~~~~ 340 (396)
++.++..+.
T Consensus 259 v~~~~~~~~ 267 (269)
T TIGR03015 259 VREVIAEID 267 (269)
T ss_pred HHHHHHHhh
Confidence 999988753
No 184
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.29 E-value=2.4e-11 Score=122.89 Aligned_cols=167 Identities=27% Similarity=0.335 Sum_probs=99.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-EEE---Eecccccchhh
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV-FIN---VRISNLMSKWF 164 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~-~~~---i~~~~l~~~~~ 164 (396)
+|.|++.+|..+.-.+..- .......+...+...+|||+|+||||||++|+++++..... |.. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg--~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGG--VHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCC--CccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 5889999988875443220 00001111112334579999999999999999999976433 322 12222211110
Q ss_pred ch---HHHHH-HHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhh---------ccCcCCCCcEEEE
Q 016044 165 GD---AQKLV-AAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD---------GFTTDQNARVMVL 231 (396)
Q Consensus 165 g~---~~~~~-~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~~~~v~vI 231 (396)
.. .+..+ ...+ .....++++|||+|.+....+. .++..|+ |....-+.++.+|
T Consensus 282 ~~~~~g~~~~~~G~l---~~A~~Gil~iDEi~~l~~~~q~-----------~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 282 RDPETREFTLEGGAL---VLADNGVCCIDEFDKMDDSDRT-----------AIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred EccCcceEEecCccE---EecCCCEEEEechhhCCHHHHH-----------HHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 00 00000 0011 1224589999999998433221 2222222 2222335678999
Q ss_pred EecCCCC-------------CCcHHHHhccCCceE-eCCCCHHHHHHHHHHHhc
Q 016044 232 AATNRPS-------------ELDEAILRRLPQAFE-IGMPDRKERAQILKVILK 271 (396)
Q Consensus 232 ~atn~~~-------------~l~~~l~~R~~~~i~-~~~P~~~er~~il~~~l~ 271 (396)
+|+|+.+ .+++++++||+..+. .+.|+.+...+|.++.+.
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9999753 589999999987654 478999999999998764
No 185
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.28 E-value=2e-10 Score=105.91 Aligned_cols=216 Identities=20% Similarity=0.250 Sum_probs=131.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEecccc
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISNL 159 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~l 159 (396)
-.+|+..+++.+..+-. ++...+ .....++||+|++|.|||++++.++... .+|++.+.++.-
T Consensus 35 rWIgY~~A~~~L~~L~~-------Ll~~P~-~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEE-------LLEYPK-RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred CeecCHHHHHHHHHHHH-------HHhCCc-ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 45788888777765442 222211 2224679999999999999999998744 246666665322
Q ss_pred cch--------------h--hchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC
Q 016044 160 MSK--------------W--FGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD 223 (396)
Q Consensus 160 ~~~--------------~--~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 223 (396)
.+. + .....+.-..+....+..+..+|+|||+|.++....... .++++.+..+..+
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~q--------r~~Ln~LK~L~Ne 178 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQ--------REFLNALKFLGNE 178 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHH--------HHHHHHHHHHhhc
Confidence 111 0 012233333445566677889999999999754432221 1344444433333
Q ss_pred CCCcEEEEEecCCCC--CCcHHHHhccCCceEeCCCC-HHHHHHHHHHHhcCCCCC--CCCCH----HHHHHhCCCCcHH
Q 016044 224 QNARVMVLAATNRPS--ELDEAILRRLPQAFEIGMPD-RKERAQILKVILKGEKVE--ENIDF----DYLAGLCEGFTGS 294 (396)
Q Consensus 224 ~~~~v~vI~atn~~~--~l~~~l~~R~~~~i~~~~P~-~~er~~il~~~l~~~~~~--~~~~l----~~la~~~~g~s~~ 294 (396)
-.-.++.+|+..-.. .-|+.+.+|| ..+.+|.-. -++...++..+-...++. +++.. ..+-..++|..|
T Consensus 179 L~ipiV~vGt~~A~~al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG- 256 (302)
T PF05621_consen 179 LQIPIVGVGTREAYRALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG- 256 (302)
T ss_pred cCCCeEEeccHHHHHHhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-
Confidence 344455555543222 3478899999 667776643 345556676666655554 33332 456678888775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHH
Q 016044 295 DLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEK 334 (396)
Q Consensus 295 di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (396)
++..++..|+..|++... ..|+.+.+..
T Consensus 257 ~l~~ll~~aA~~AI~sG~------------E~It~~~l~~ 284 (302)
T PF05621_consen 257 ELSRLLNAAAIAAIRSGE------------ERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHHHHhcCC------------ceecHHHHhh
Confidence 899999999999997632 4477766654
No 186
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=1.7e-12 Score=108.60 Aligned_cols=112 Identities=27% Similarity=0.406 Sum_probs=67.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch------hhch--HHHHHHHHHHHHHHhCCcEEEEcccccccc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK------WFGD--AQKLVAAVFSLAYKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~------~~g~--~~~~~~~~f~~a~~~~p~vl~iDEid~l~~ 196 (396)
+|+|+||||||||++|+.+|+.++.+++.++++..... +.-. ........+..+.. .+++++|||++....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~~ 79 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAPP 79 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG--H
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCCH
Confidence 58999999999999999999999999999988654322 1100 00000000001111 458999999998621
Q ss_pred CCCCCchHHHHhhHHHHHHHhhccC----------cCCCC-----cEEEEEecCCCC----CCcHHHHhcc
Q 016044 197 QRRTSDHEALTNMKTEFMALWDGFT----------TDQNA-----RVMVLAATNRPS----ELDEAILRRL 248 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~-----~v~vI~atn~~~----~l~~~l~~R~ 248 (396)
.+...++..++.-. ...+. ++.+|+|+|+.+ .+++++++||
T Consensus 80 -----------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 80 -----------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -----------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 12223333332211 00111 489999999988 8999999998
No 187
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.27 E-value=2.7e-11 Score=100.33 Aligned_cols=128 Identities=25% Similarity=0.405 Sum_probs=82.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc---EEEEecccccchh--------------hchHHHHHHHHHHHHHHhCCcE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV---FINVRISNLMSKW--------------FGDAQKLVAAVFSLAYKLQPAI 185 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~---~~~i~~~~l~~~~--------------~g~~~~~~~~~f~~a~~~~p~v 185 (396)
+..++|+||||||||++++.++..+... ++.++++...... ...........+..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999988765 7888876544321 1234556667788888777899
Q ss_pred EEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC-CCCCcHHHHhccCCceEeCCC
Q 016044 186 IFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR-PSELDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 186 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~-~~~l~~~l~~R~~~~i~~~~P 257 (396)
|++||++.+.............. ....... .......+|+++|. ....+..+.+|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEE--LRLLLLL-----KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhh--hHHHHHH-----HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999999854432111000000 0000000 11345688888886 444556666688777776554
No 188
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.26 E-value=3.7e-11 Score=103.55 Aligned_cols=133 Identities=23% Similarity=0.343 Sum_probs=77.8
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh---
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW--- 163 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~--- 163 (396)
|+|.+...+.+.+.+.. + ...+.+|||+|++||||+++|++|.+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~-------~-----a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKR-------A-----ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHH-------H-----TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHH-------H-----hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 46777777777666542 2 2235789999999999999999999865 4799999998874331
Q ss_pred --hchHH-------HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------cCCCCc
Q 016044 164 --FGDAQ-------KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-------TDQNAR 227 (396)
Q Consensus 164 --~g~~~-------~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~ 227 (396)
+|... .....++.. ...++||||||+.|.... ...++..++.-. ...+.+
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~---A~~GtL~Ld~I~~L~~~~-----------Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQ---ANGGTLFLDEIEDLPPEL-----------QAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHH---TTTSEEEEETGGGS-HHH-----------HHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hhhccccccccccccccCCceee---ccceEEeecchhhhHHHH-----------HHHHHHHHhhchhcccccccccccc
Confidence 11100 001123333 355999999999984322 224444443211 112347
Q ss_pred EEEEEecCCC-------CCCcHHHHhcc
Q 016044 228 VMVLAATNRP-------SELDEAILRRL 248 (396)
Q Consensus 228 v~vI~atn~~-------~~l~~~l~~R~ 248 (396)
+.+|++|+.+ ..+.++|..|+
T Consensus 135 ~RiI~st~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 135 VRIIASTSKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp EEEEEEESS-HHHHHHTTSS-HHHHHHH
T ss_pred ceEEeecCcCHHHHHHcCCChHHHHHHh
Confidence 8999999863 35566666666
No 189
>PRK04132 replication factor C small subunit; Provisional
Probab=99.25 E-value=7.1e-11 Score=123.68 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=106.9
Q ss_pred eEEEEC--CCCCcHHHHHHHHHHHc-----CCcEEEEecccccchhhchHHHHHHHHHHHHHHh------CCcEEEEccc
Q 016044 125 GVLLYG--PPGTGKTMLAKAIAKES-----GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKL------QPAIIFIDEV 191 (396)
Q Consensus 125 ~vLL~G--ppGtGKT~la~ala~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~------~p~vl~iDEi 191 (396)
.-+..| |++.||||+|+++|+++ +.+++.+|+++..+. ..++.+...+... ...|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 346678 99999999999999997 568999999875322 2344443333222 1259999999
Q ss_pred cccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhc
Q 016044 192 DSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILK 271 (396)
Q Consensus 192 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~ 271 (396)
|.|... ..+.|+..++. .+.++.+|++||.++.+.+++++|| ..+.|++|+.++....++..+.
T Consensus 640 D~Lt~~-----------AQnALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 640 DALTQD-----------AQQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred ccCCHH-----------HHHHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 998421 12245555543 3567899999999999999999999 9999999999999999999887
Q ss_pred CCCCC-CCCCHHHHHHhCCC
Q 016044 272 GEKVE-ENIDFDYLAGLCEG 290 (396)
Q Consensus 272 ~~~~~-~~~~l~~la~~~~g 290 (396)
...+. ++..+..++..+.|
T Consensus 704 ~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 704 NEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred hcCCCCCHHHHHHHHHHcCC
Confidence 65543 33357788888887
No 190
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.25 E-value=5.5e-11 Score=122.12 Aligned_cols=54 Identities=30% Similarity=0.370 Sum_probs=44.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV 150 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~ 150 (396)
+.|..-|++++|++++++.++..+.. +++++|+||||||||++++++++.++..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 34556789999999999988776642 2579999999999999999999987644
No 191
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.25 E-value=4.8e-11 Score=103.13 Aligned_cols=115 Identities=22% Similarity=0.329 Sum_probs=77.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC----cEEEEecccccchhhchHHHHHHHHHH----HHHHhCCcEEEEccccc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGA----VFINVRISNLMSKWFGDAQKLVAAVFS----LAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~----~~~~i~~~~l~~~~~g~~~~~~~~~f~----~a~~~~p~vl~iDEid~ 193 (396)
|-..++|.||+|||||.+|+++|..+.. +++.++++.+.... +.+..+..... .......+||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3467899999999999999999999996 99999999887610 00111111111 11111226999999999
Q ss_pred cccCCCCCchHHHHhhHHHHHHHhhccCcC-------CCCcEEEEEecCCCC
Q 016044 194 FLGQRRTSDHEALTNMKTEFMALWDGFTTD-------QNARVMVLAATNRPS 238 (396)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vI~atn~~~ 238 (396)
..++...........+.+.|+..+++-... +-.++++|+|+|--.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 987654455555556777888888654321 124789999999543
No 192
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.2e-11 Score=108.60 Aligned_cols=86 Identities=22% Similarity=0.433 Sum_probs=61.9
Q ss_pred CCcEEEEccccccccCCCCCchHHHH-hhHHHHHHHhhccCc------CCCCcEEEEEec----CCCCCCcHHHHhccCC
Q 016044 182 QPAIIFIDEVDSFLGQRRTSDHEALT-NMKTEFMALWDGFTT------DQNARVMVLAAT----NRPSELDEAILRRLPQ 250 (396)
Q Consensus 182 ~p~vl~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~l~~~~~------~~~~~v~vI~at----n~~~~l~~~l~~R~~~ 250 (396)
+.+|+||||||.++.+...+..+..+ .+...++-+++|... -....+++|++. ..|++|-|.|.-||+.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 34899999999998776533322222 234466666665432 224568888876 3688999999999999
Q ss_pred ceEeCCCCHHHHHHHHH
Q 016044 251 AFEIGMPDRKERAQILK 267 (396)
Q Consensus 251 ~i~~~~P~~~er~~il~ 267 (396)
++++...+.+.-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999999888774
No 193
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=8.5e-10 Score=104.50 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=96.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc------------------------EEEEecccccchhhchHHHHHHHHHHH-
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV------------------------FINVRISNLMSKWFGDAQKLVAAVFSL- 177 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~- 177 (396)
++++||+||+|+||+++|+++|+.+.+. ++.+... .++.. .-..++.+...
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I--~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDI--GVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCC--CHHHHHHHHHHH
Confidence 6889999999999999999999965331 1112111 01111 11223333332
Q ss_pred ---HHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEe
Q 016044 178 ---AYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEI 254 (396)
Q Consensus 178 ---a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~ 254 (396)
.......|++||++|.|.. ...+.+++.++ +++.++++|.+|+.++.+.+.+++|+ ..+.|
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLE----EPp~~~~fiL~t~~~~~llpTI~SRC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLE----EPRPNTYFLLQADLSAALLPTIYSRC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhCH-----------HHHHHHHHHhc----CCCCCeEEEEEECChHhCchHHHhhc-eEEeC
Confidence 2233447999999999832 23346666665 46788999999999999999999999 89999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCc
Q 016044 255 GMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFT 292 (396)
Q Consensus 255 ~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s 292 (396)
++|+.++..+.|...... .......++..+.|-.
T Consensus 164 ~~~~~~~~~~~L~~~~~~----~~~~~~~~~~l~~g~p 197 (325)
T PRK06871 164 HPPEEQQALDWLQAQSSA----EISEILTALRINYGRP 197 (325)
T ss_pred CCCCHHHHHHHHHHHhcc----ChHHHHHHHHHcCCCH
Confidence 999999998888765421 1112334455566533
No 194
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.21 E-value=2.4e-11 Score=121.65 Aligned_cols=210 Identities=19% Similarity=0.261 Sum_probs=130.0
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK 162 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~ 162 (396)
.+.+++|.+...+.+.+.+.. . .....+++++|++||||+++|+++.... +.+|+.++|..+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH
Confidence 455678877777776665431 1 1224679999999999999999998865 468999999887432
Q ss_pred hhchHHHHHHHHHH---------------HHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-------
Q 016044 163 WFGDAQKLVAAVFS---------------LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF------- 220 (396)
Q Consensus 163 ~~g~~~~~~~~~f~---------------~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 220 (396)
... ..+|. ......+++|||||++.|....+ ..++..+...
T Consensus 205 ~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q-----------~~l~~~l~~~~~~~~~~ 267 (445)
T TIGR02915 205 LLE------SELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQ-----------AKLLRFLQERVIERLGG 267 (445)
T ss_pred HHH------HHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHH-----------HHHHHHHhhCeEEeCCC
Confidence 211 11111 01123468999999999843221 1333333211
Q ss_pred CcCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hCC
Q 016044 221 TTDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG----LCE 289 (396)
Q Consensus 221 ~~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~----~~~ 289 (396)
....+.++.+|++|+.. ..+.+.|..|+ ..+.+..|+..+|.+-+..++..+ +..++. ...
T Consensus 268 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~-------l~~~~~~~~~~~~ 339 (445)
T TIGR02915 268 REEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAF-------LERFARELKRKTK 339 (445)
T ss_pred CceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHH-------HHHHHHHhCCCCC
Confidence 11123468899998864 45667788888 778899999999987444333211 112221 123
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHH
Q 016044 290 GFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDL 332 (396)
Q Consensus 290 g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~ 332 (396)
++++..+..|..+.|..+++++.+.............|+.+|+
T Consensus 340 ~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~~~i~~~~l 382 (445)
T TIGR02915 340 GFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAEDL 382 (445)
T ss_pred CCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 5777777777777777777777665554333333455666665
No 195
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1e-10 Score=106.82 Aligned_cols=130 Identities=22% Similarity=0.368 Sum_probs=86.7
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhc---CCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc-hhhc
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSH---GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS-KWFG 165 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~---~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~-~~~g 165 (396)
++|++.+|+.|.-.+... +..+... ....-...++||.||+|||||.||+.+|+.++.||-..++..+.. .|+|
T Consensus 63 VIGQe~AKKvLsVAVYNH--YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNH--YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhH--HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 789999998875544422 1122111 111123468999999999999999999999999999999988865 4666
Q ss_pred h-HHHHHHHHHHHH----HHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccC
Q 016044 166 D-AQKLVAAVFSLA----YKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFT 221 (396)
Q Consensus 166 ~-~~~~~~~~f~~a----~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~ 221 (396)
+ .+..+..++..+ .+...+|+||||||.+.++..+.. .-+.+.+...+++.++|..
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTv 204 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTV 204 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCce
Confidence 5 345555554433 233559999999999987653211 1122334557778777653
No 196
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.19 E-value=4.9e-11 Score=120.17 Aligned_cols=214 Identities=19% Similarity=0.240 Sum_probs=136.9
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK 162 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~ 162 (396)
.+.+++|.....+.+.+.+.. . .....++++.|++|||||++|++++... +.+|+.++|..+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~-------~-----~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR-------L-----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHH-------H-----hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH
Confidence 456788887777776655431 1 2234679999999999999999999875 479999999887332
Q ss_pred hhchHHHHHHHHHHH---------------HHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC------
Q 016044 163 WFGDAQKLVAAVFSL---------------AYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT------ 221 (396)
Q Consensus 163 ~~g~~~~~~~~~f~~---------------a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------ 221 (396)
.. -..+|.. .....+++|||||++.+....+ ..++..++...
T Consensus 204 ~~------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 204 LI------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQ-----------TRLLRVLADGQFYRVGG 266 (469)
T ss_pred HH------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHH-----------HHHHHHHhcCcEEeCCC
Confidence 11 1112211 1122458999999999843221 13333333211
Q ss_pred -cCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hCC
Q 016044 222 -TDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG----LCE 289 (396)
Q Consensus 222 -~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~----~~~ 289 (396)
.....++.+|++|+.. ..+.+.|..|+ ..+.+..|+..+|.+-+..++..+ +..++. ...
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~-------l~~~~~~~~~~~~ 338 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHF-------LQVAARELGVEAK 338 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHH-------HHHHHHHcCCCCC
Confidence 0112457899998753 35668888888 678888888888877444433211 111222 223
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Q 016044 290 GFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVL 336 (396)
Q Consensus 290 g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al 336 (396)
++++..+..|+++.|..+++++.+.............|+.+|+...+
T Consensus 339 ~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~~~i~~~~l~~~~ 385 (469)
T PRK10923 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGEL 385 (469)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHCcHhh
Confidence 68888888888888888888887766654444445678888875544
No 197
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.2e-10 Score=107.40 Aligned_cols=245 Identities=21% Similarity=0.275 Sum_probs=139.2
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHhHHHHhHHhC--CC--CCCCCccchhhhcccc
Q 016044 3 KRMGNSSETKFLQELILYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEISKRLG--RP--LIQTNPYEDVIACDVI 78 (396)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~ 78 (396)
++....+.|+-+.+|+..|.+.++.-.+...+-..++|....+-+-. .......+. .| .+...+++..+...++
T Consensus 433 A~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~--r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi 510 (744)
T KOG0741|consen 433 AALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVT--RGDFLNALEDVKPAFGISEEDLERFVMNGMI 510 (744)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeec--HHHHHHHHHhcCcccCCCHHHHHHHHhCCce
Confidence 45678899999999999998887776665554455555433221110 001111111 01 1112223333333333
Q ss_pred CCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEE-ecc
Q 016044 79 NPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINV-RIS 157 (396)
Q Consensus 79 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i-~~~ 157 (396)
+-..+ +..| +++-+.-+. ..+.++ ..+-..+||+||||+|||.||..+|...+.||+.+ ++.
T Consensus 511 ~~g~~---v~~i--l~~G~llv~-----qvk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe 573 (744)
T KOG0741|consen 511 NWGPP---VTRI--LDDGKLLVQ-----QVKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE 573 (744)
T ss_pred eeccc---HHHH--HhhHHHHHH-----Hhhccc-------cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChH
Confidence 21111 1111 111111111 122222 22346799999999999999999999999999985 444
Q ss_pred cccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 158 NLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
++.+-.-...-..+..+|..|++..-+||++|+++.|..--.-+. .....++..++-++..... ...+.+|++||.+.
T Consensus 574 ~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGP-RfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~ 651 (744)
T KOG0741|consen 574 DMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRR 651 (744)
T ss_pred HccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCc-hhhHHHHHHHHHHhccCCC-CCceEEEEecccHH
Confidence 444433333445788899999998889999999999864332211 1222334445555554332 23467888888865
Q ss_pred CCCc-HHHHhccCCceEeCCCCH-HHHHHHHHH
Q 016044 238 SELD-EAILRRLPQAFEIGMPDR-KERAQILKV 268 (396)
Q Consensus 238 ~~l~-~~l~~R~~~~i~~~~P~~-~er~~il~~ 268 (396)
+-+. -.+...|+..+.+|..+. ++..+++..
T Consensus 652 ~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 652 EVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred HHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 5442 355667888888876654 455555443
No 198
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.18 E-value=2.7e-12 Score=103.26 Aligned_cols=115 Identities=31% Similarity=0.429 Sum_probs=57.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc-cccc-hhhch----HHHHHHHHHHHHHHhC---CcEEEEccccccc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS-NLMS-KWFGD----AQKLVAAVFSLAYKLQ---PAIIFIDEVDSFL 195 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~-~l~~-~~~g~----~~~~~~~~f~~a~~~~---p~vl~iDEid~l~ 195 (396)
++||+|+||+|||++|+++|+.++..|..+.+. ++.- ...|. .+. ..|.. ... ..|+++|||++..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~--~~GPif~~ill~DEiNrap 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEF--RPGPIFTNILLADEINRAP 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEE--EE-TT-SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEe--ecChhhhceeeecccccCC
Confidence 589999999999999999999999999988774 3321 11110 000 00000 001 1699999999875
Q ss_pred cCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC-----CCcHHHHhcc
Q 016044 196 GQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS-----ELDEAILRRL 248 (396)
Q Consensus 196 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~-----~l~~~l~~R~ 248 (396)
++.++ ++.+.+.+-.-.+++....-+.+++||+|.|+.+ .+++++++||
T Consensus 76 pktQs----AlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 76 PKTQS----ALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHH----HHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HHHHH----HHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 44322 1111111111112233334467799999999866 6889999998
No 199
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.17 E-value=1.1e-09 Score=99.09 Aligned_cols=94 Identities=27% Similarity=0.327 Sum_probs=61.3
Q ss_pred CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC-------------CCCCcHHHHhcc
Q 016044 182 QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR-------------PSELDEAILRRL 248 (396)
Q Consensus 182 ~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~-------------~~~l~~~l~~R~ 248 (396)
-|+||||||++.|. - .....+...++. +-.-++|+++|+ |.-+++.+++|+
T Consensus 296 vPGVLFIDEVhMLD-------i----EcFTyL~kalES-----~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl 359 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-------I----ECFTYLHKALES-----PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL 359 (456)
T ss_pred cCcceEeeehhhhh-------h----HHHHHHHHHhcC-----CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe
Confidence 57899999998771 1 111123333332 222366777774 667899999999
Q ss_pred CCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCc
Q 016044 249 PQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFT 292 (396)
Q Consensus 249 ~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 292 (396)
.++..-+.+.++.++|++...+...+. .+-.+..++.....-|
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 788888889999999999998876665 2223455555444333
No 200
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.16 E-value=8.2e-11 Score=115.42 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=88.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEeccc-ccchhhc
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRISN-LMSKWFG 165 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~~~-l~~~~~g 165 (396)
.|+|.+++++.+...+. ...++||+||||||||++|++++...+. +|....+.- .....+|
T Consensus 21 ~i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 47899998888755442 2467999999999999999999997643 444443321 1122222
Q ss_pred hH-HHHH--HHHHHHHHHh---CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-------CcCCCCcEEEEE
Q 016044 166 DA-QKLV--AAVFSLAYKL---QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF-------TTDQNARVMVLA 232 (396)
Q Consensus 166 ~~-~~~~--~~~f~~a~~~---~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~v~vI~ 232 (396)
.. -... ..-|...... ...++|+|||+.+.++ ..+.++..+..- ....+.+++ ++
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~-----------~QsaLLeam~Er~~t~g~~~~~lp~rfi-v~ 152 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA-----------ILNTLLTAINERRFRNGAHEEKIPMRLL-VT 152 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccCCHH-----------HHHHHHHHHHhCeEecCCeEEeCCCcEE-EE
Confidence 21 0000 1112111110 1249999999876332 223444444211 111123344 44
Q ss_pred ecCCCC---CCcHHHHhccCCceEeCCCC-HHHHHHHHHHH
Q 016044 233 ATNRPS---ELDEAILRRLPQAFEIGMPD-RKERAQILKVI 269 (396)
Q Consensus 233 atn~~~---~l~~~l~~R~~~~i~~~~P~-~~er~~il~~~ 269 (396)
|||... ...++++.||...+.+|+|+ .++..+++...
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 456422 23469999998889999997 46667777654
No 201
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.15 E-value=5.5e-10 Score=95.86 Aligned_cols=134 Identities=22% Similarity=0.321 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC----------------------
Q 016044 92 GLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA---------------------- 149 (396)
Q Consensus 92 G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~---------------------- 149 (396)
|++.+++.|...+. .+ +-++.+||+||+|+||+++|+++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~----------~~---~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIK----------SG---RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHH----------CT---C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHH----------cC---CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 78888888876654 22 23678999999999999999999996522
Q ss_pred -cEEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCC
Q 016044 150 -VFINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQ 224 (396)
Q Consensus 150 -~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 224 (396)
.++.++...-... . .-..++.+..... .....|++|||+|.|. ....+.|++.++ ++
T Consensus 68 ~d~~~~~~~~~~~~-i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LE----ep 129 (162)
T PF13177_consen 68 PDFIIIKPDKKKKS-I--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLE----EP 129 (162)
T ss_dssp TTEEEEETTTSSSS-B--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHH----ST
T ss_pred cceEEEecccccch-h--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhc----CC
Confidence 2333332221000 0 1123333333222 2245799999999983 223446666666 35
Q ss_pred CCcEEEEEecCCCCCCcHHHHhccCCceEeCCC
Q 016044 225 NARVMVLAATNRPSELDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 225 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P 257 (396)
+.++.+|.+|+.++.+.+.+++|+ ..+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHTTS-EEEEE---
T ss_pred CCCEEEEEEECChHHChHHHHhhc-eEEecCCC
Confidence 678999999999999999999999 77777654
No 202
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.14 E-value=3e-10 Score=113.28 Aligned_cols=146 Identities=27% Similarity=0.331 Sum_probs=88.9
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC----------------
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---------------- 148 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---------------- 148 (396)
.+|.++.|++.+++.+.- . ....++++|+||||||||++++.++..+.
T Consensus 188 ~d~~~v~Gq~~~~~al~l-----------a-----a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI-----------T-----AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhhe-----------e-----ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 488899999888877631 1 12247899999999999999999987432
Q ss_pred ------------CcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHH
Q 016044 149 ------------AVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMAL 216 (396)
Q Consensus 149 ------------~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 216 (396)
.||...+.+.-....+|.....-...+..| ..++||+||++.+... ....+...
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A---~gGvLfLDEi~e~~~~-----------~~~~L~~~ 317 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA---HNGVLFLDELPEFERR-----------TLDALREP 317 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhc---cCCEEecCCchhCCHH-----------HHHHHHHH
Confidence 111111111111112222111112233333 4589999999887321 12233333
Q ss_pred hhc---------cCcCCCCcEEEEEecCCCC---------------------CCcHHHHhccCCceEeCCCCHH
Q 016044 217 WDG---------FTTDQNARVMVLAATNRPS---------------------ELDEAILRRLPQAFEIGMPDRK 260 (396)
Q Consensus 217 l~~---------~~~~~~~~v~vI~atn~~~---------------------~l~~~l~~R~~~~i~~~~P~~~ 260 (396)
++. .....+.++.+|+|+|+.. .++.++++||+..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 321 1112356799999999742 4778999999999999988654
No 203
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=4.3e-10 Score=107.21 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=90.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcE-------------------------EEEeccccc----------------
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVF-------------------------INVRISNLM---------------- 160 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~~-------------------------~~i~~~~l~---------------- 160 (396)
-++++||+||+|+||+++|+++|+.+.+.. ..+......
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 478999999999999999999998764421 111111000
Q ss_pred --ch----h-hchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEE
Q 016044 161 --SK----W-FGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVM 229 (396)
Q Consensus 161 --~~----~-~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 229 (396)
++ . ..-.-..++.+...+. .....|++||++|.+.. ...+.|++.++ +++.+++
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLE----EPp~~t~ 164 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLE----EPPPGTV 164 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhc----CCCcCcE
Confidence 00 0 0001122333333222 22346999999999832 23346777666 4678899
Q ss_pred EEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHH
Q 016044 230 VLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVI 269 (396)
Q Consensus 230 vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~ 269 (396)
+|.+|++++.+.+.++||| ..+.|++|+.++..+.|...
T Consensus 165 fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 165 FLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 89999999999999888764
No 204
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.7e-09 Score=103.30 Aligned_cols=152 Identities=11% Similarity=0.146 Sum_probs=98.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCc------------------------EEEEecccc-cchhhchHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAV------------------------FINVRISNL-MSKWFGDAQKLVAAVFS 176 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~l-~~~~~g~~~~~~~~~f~ 176 (396)
-++.+||+||+|+||+++|.++|+.+-+. +..+....- ..-.+.+.......+..
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 36889999999999999999999865321 111211100 00112222333333333
Q ss_pred HHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCC
Q 016044 177 LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGM 256 (396)
Q Consensus 177 ~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~ 256 (396)
........|++||++|.|.. ...+.|++.++ +++.++++|..|+.++.+.+.++||+ ..+.|++
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLE----EPp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~~~ 166 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTD-----------AAANALLKTLE----EPPENTWFFLACREPARLLATLRSRC-RLHYLAP 166 (334)
T ss_pred ccccCCceEEEEcchHhhCH-----------HHHHHHHHHhc----CCCCCeEEEEEECChhhChHHHHhcc-ccccCCC
Confidence 33334557999999999832 23346666666 46788999999999999999999999 7889999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcH
Q 016044 257 PDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 257 P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~ 293 (396)
|+.++..+.|.... ..+ ......++..+.|-.+
T Consensus 167 ~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 167 PPEQYALTWLSREV---TMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred CCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHH
Confidence 99998888776432 121 1123355666666443
No 205
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=1.4e-09 Score=111.25 Aligned_cols=201 Identities=15% Similarity=0.200 Sum_probs=115.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE-Ee---c
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN-VR---I 156 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~-i~---~ 156 (396)
...+.++++++|+++.++.+..++... .+. ..+.+.++|+||||||||++++.+|.+++..++. .+ |
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~-----~~~----~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQ-----VLE----NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhc-----ccc----cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 445789999999999999998876531 110 1223458999999999999999999988765433 11 1
Q ss_pred ccccchh------------hchHHHHHHHHHHHHHH----------hCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 157 SNLMSKW------------FGDAQKLVAAVFSLAYK----------LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 157 ~~l~~~~------------~g~~~~~~~~~f~~a~~----------~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
......+ +......+..++..+.. ....||+|||++.+.... ..... .++
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----~~~lq----~lL 219 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----TRALH----EIL 219 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----HHHHH----HHH
Confidence 1100000 01112223333333331 234699999999875321 11122 222
Q ss_pred H-HhhccCcCCCCcEEEEEecC-CCC--------------CCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCC
Q 016044 215 A-LWDGFTTDQNARVMVLAATN-RPS--------------ELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVE 276 (396)
Q Consensus 215 ~-~l~~~~~~~~~~v~vI~atn-~~~--------------~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~ 276 (396)
. ... . ...+.+|++++ .+. .+.+++++ |+ .+|.|++.+.....+.|+.++......
T Consensus 220 r~~~~---e--~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 220 RWKYV---S--IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHhh---c--CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 2 111 1 22334444433 111 13378876 55 679999999999888888888653221
Q ss_pred --CC--C----CHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 016044 277 --EN--I----DFDYLAGLCEGFTGSDLLEVCKQAAYFSI 308 (396)
Q Consensus 277 --~~--~----~l~~la~~~~g~s~~di~~l~~~A~~~a~ 308 (396)
.+ + .+..|+..+. +|++.++..--..+.
T Consensus 294 ~~~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQGCS----GDIRSAINSLQFSSS 329 (637)
T ss_pred cccccccCCHHHHHHHHHhCC----ChHHHHHHHHHHHHh
Confidence 11 1 3445555444 577777665444433
No 206
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=4.5e-09 Score=99.34 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=88.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCc-----------------------EEEEecccccchhhchHHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAV-----------------------FINVRISNLMSKWFGDAQKLVAAVFSLA 178 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~-----------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a 178 (396)
-++.+||+||.|+||+++|+++|+.+-+. ++.+.... .++.+ .-..++.+...+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence 36889999999999999999999865321 22222110 01111 112233333322
Q ss_pred ----HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEe
Q 016044 179 ----YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEI 254 (396)
Q Consensus 179 ----~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~ 254 (396)
...+..|++||++|.+.. ...+.+++.++ +++.++++|..|+.++.+.+.++||+ ..+.|
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLE----EPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~ 164 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLE----EPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVV 164 (319)
T ss_pred hhCcccCCceEEEecchhhhCH-----------HHHHHHHHHhc----CCCCCeEEEEEECChhhChHHHHhcc-eeEeC
Confidence 223347999999999832 23346666665 46778999999999999999999999 89999
Q ss_pred CCCCHHHHHHHHHH
Q 016044 255 GMPDRKERAQILKV 268 (396)
Q Consensus 255 ~~P~~~er~~il~~ 268 (396)
++|+.++..+.+..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999998888765
No 207
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.12 E-value=1.2e-09 Score=112.24 Aligned_cols=137 Identities=20% Similarity=0.316 Sum_probs=90.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEecccccchhhchHH--HHHH-H--HHH--HHHHhCCcEEEEcccccc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRISNLMSKWFGDAQ--KLVA-A--VFS--LAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~~~l~~~~~g~~~--~~~~-~--~f~--~a~~~~p~vl~iDEid~l 194 (396)
.+|||.|+||||||++|++++..++. +|+.+.+.......+|... ..+. . .|. .......++||+||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 57999999999999999999998753 5888875433333333321 0000 0 000 011123479999999998
Q ss_pred ccCCCCCchHHHHhhHHHHHHHhh---------ccCcCCCCcEEEEEecCCCC---CCcHHHHhccCCceEeC-CCCHHH
Q 016044 195 LGQRRTSDHEALTNMKTEFMALWD---------GFTTDQNARVMVLAATNRPS---ELDEAILRRLPQAFEIG-MPDRKE 261 (396)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~~~~v~vI~atn~~~---~l~~~l~~R~~~~i~~~-~P~~~e 261 (396)
.... ...++..|+ |.....+.++.+|+|+|..+ .+++++++||...+.+. .|+.++
T Consensus 97 ~~~~-----------q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~e 165 (589)
T TIGR02031 97 DDGL-----------SNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDL 165 (589)
T ss_pred CHHH-----------HHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHH
Confidence 4322 223444443 22222346789999999765 78999999998877665 567888
Q ss_pred HHHHHHHHhc
Q 016044 262 RAQILKVILK 271 (396)
Q Consensus 262 r~~il~~~l~ 271 (396)
|.+|++....
T Consensus 166 r~eil~~~~~ 175 (589)
T TIGR02031 166 RVEIVRRERC 175 (589)
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 208
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.12 E-value=2.9e-10 Score=114.19 Aligned_cols=214 Identities=17% Similarity=0.209 Sum_probs=130.2
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK 162 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~ 162 (396)
.+..++|.+...+.+.+.+.. + .....+++++|++||||+++|+++.... +.+|+.++|..+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~ 208 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK-------I-----ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES 208 (457)
T ss_pred cccceecccHHHhHHHHHHHH-------H-----cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH
Confidence 344577766665555443321 1 2224679999999999999999998764 579999999887432
Q ss_pred hhchHHHHHHHHHH---------------HHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-------
Q 016044 163 WFGDAQKLVAAVFS---------------LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF------- 220 (396)
Q Consensus 163 ~~g~~~~~~~~~f~---------------~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~------- 220 (396)
.. -..+|. .......++|||||++.+.... ...++..++..
T Consensus 209 ~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~-----------q~~L~~~l~~~~~~~~~~ 271 (457)
T PRK11361 209 LL------ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVL-----------QAKLLRILQEREFERIGG 271 (457)
T ss_pred HH------HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHH-----------HHHHHHHHhcCcEEeCCC
Confidence 21 111111 1112245899999999984332 11333333221
Q ss_pred CcCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hCC
Q 016044 221 TTDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG----LCE 289 (396)
Q Consensus 221 ~~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~----~~~ 289 (396)
....+.++.+|++|+.. ..+.+.+..|+ ..+.+..|+..+|.+-+..+.... +..++. ...
T Consensus 272 ~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLreR~~di~~l~~~~-------l~~~~~~~~~~~~ 343 (457)
T PRK11361 272 HQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLRDRREDISLLANHF-------LQKFSSENQRDII 343 (457)
T ss_pred CceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhchhhHHHHHHHH-------HHHHHHHcCCCCC
Confidence 11113458899999854 34667777788 668899999999877444333211 112222 123
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Q 016044 290 GFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVL 336 (396)
Q Consensus 290 g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al 336 (396)
++++..+..|..+.|..+++++.+.............|+.+|+...+
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~~~i~~~~l~~~~ 390 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQI 390 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCCcccHHHChHhh
Confidence 67777777777777777777776655543333334568888876544
No 209
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.12 E-value=5.3e-10 Score=106.62 Aligned_cols=171 Identities=25% Similarity=0.357 Sum_probs=107.6
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec-------
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI------- 156 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~------- 156 (396)
...|.-++|++..|..|--..+ ...-.|+||-|+.|+||||++|+++.-+.-.-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~ 78 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPD 78 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCC
Confidence 3578899999999998843222 1223689999999999999999999965321111111
Q ss_pred ------c-------------------cccchhhchHHH-HHHHH------------HH--HHHHhCCcEEEEcccccccc
Q 016044 157 ------S-------------------NLMSKWFGDAQK-LVAAV------------FS--LAYKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 157 ------~-------------------~l~~~~~g~~~~-~~~~~------------f~--~a~~~~p~vl~iDEid~l~~ 196 (396)
. .+...-.+.++. .+..+ |. ...+.+.+|+|+||++.|..
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d 158 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD 158 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH
Confidence 0 011111233333 11111 10 11122348999999998832
Q ss_pred CCCCCchHHHHhhHHH--HHHHhhccCcCCCCcEEEEEecCCC-CCCcHHHHhccCCceEeCCC-CHHHHHHHHHHHhcC
Q 016044 197 QRRTSDHEALTNMKTE--FMALWDGFTTDQNARVMVLAATNRP-SELDEAILRRLPQAFEIGMP-DRKERAQILKVILKG 272 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~--ll~~l~~~~~~~~~~v~vI~atn~~-~~l~~~l~~R~~~~i~~~~P-~~~er~~il~~~l~~ 272 (396)
. ....+..+..+ -.-+.+|+....+.++++|+|+|+- ..|-+.|+.||...+.+..| +.++|.+|.+..+..
T Consensus 159 ~----lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 159 H----LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred H----HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 2 22222222211 1122456666678899999999975 47899999999999988665 789999999887764
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.11 E-value=7.5e-10 Score=105.13 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=47.7
Q ss_pred ccc-cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-------cEEEEec
Q 016044 86 EFE-SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA-------VFINVRI 156 (396)
Q Consensus 86 ~~~-~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~-------~~~~i~~ 156 (396)
-|+ ++.|+++++.++.+++.... .+ .-...+.++|+||||||||++|+++++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a-------~g-~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA-------QG-LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH-------hc-CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 455 89999999999887765321 21 1223577899999999999999999998865 6776654
No 211
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=2.2e-09 Score=101.51 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=97.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE----EE---------ecccccch-----hhc------hHHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFI----NV---------RISNLMSK-----WFG------DAQKLVAAVFSLA 178 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~----~i---------~~~~l~~~-----~~g------~~~~~~~~~f~~a 178 (396)
++.+||+||+|+||+++|.++|+.+.+.-. .+ +.+++.-- ..| -.-..++.+...+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 678999999999999999999986532100 00 01111100 000 0122334443333
Q ss_pred HH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEe
Q 016044 179 YK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEI 254 (396)
Q Consensus 179 ~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~ 254 (396)
.. ....|++||++|.|.. ...+.+++.++ +++.++++|.+|+.++.+.+.+++|| ..+.|
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLE----EPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLE----EPSPGRYLWLISAQPARLPATIRSRC-QRLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhh----CCCCCCeEEEEECChhhCchHHHhhh-eEeeC
Confidence 22 2336999999999822 23346666665 35677888889999999999999999 89999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHH
Q 016044 255 GMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDL 296 (396)
Q Consensus 255 ~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di 296 (396)
++|+.++-.+.|... ..+ ..+...++..+.|-.+..+
T Consensus 170 ~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 999999888877642 121 1123356677777544443
No 212
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.08 E-value=4.9e-09 Score=95.19 Aligned_cols=132 Identities=20% Similarity=0.280 Sum_probs=88.7
Q ss_pred CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC------------CCCCcHHHHhccC
Q 016044 182 QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR------------PSELDEAILRRLP 249 (396)
Q Consensus 182 ~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~------------~~~l~~~l~~R~~ 249 (396)
-|+||||||+|.| .-.....+.+ .+++ .-.+ +++.+||+ |.-+|-.++.|+
T Consensus 288 vpGVLFIDEvHML----DIEcFsFlNr-------AlE~----d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~- 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML----DIECFSFLNR-------ALEN----DMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRM- 350 (454)
T ss_pred ccceEEEeeehhh----hhHHHHHHHH-------Hhhh----ccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-
Confidence 4789999998877 1111222221 2221 1223 45556663 678899999999
Q ss_pred CceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 016044 250 QAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLS 328 (396)
Q Consensus 250 ~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~ 328 (396)
.+|.-.+.+.++.++||+..+....+. .+..++.|......-|-+.--+|+..|.+.|.++.. ..+.
T Consensus 351 lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~------------~~v~ 418 (454)
T KOG2680|consen 351 LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG------------KVVE 418 (454)
T ss_pred heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC------------ceee
Confidence 888888999999999999999876665 222355566655555556666788888888887732 5688
Q ss_pred HHHHHHHHHhcccc
Q 016044 329 RLDLEKVLTTSRKT 342 (396)
Q Consensus 329 ~~d~~~al~~~~~~ 342 (396)
.+|+..+.+-+-..
T Consensus 419 ~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 419 VDDIERVYRLFLDE 432 (454)
T ss_pred hhHHHHHHHHHhhh
Confidence 88999888765433
No 213
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.08 E-value=1.6e-09 Score=113.26 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=96.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhhh---cC----CCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------CcEEEE
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFS---HG----KLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-------AVFINV 154 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~---~~----~~~~~~~~vLL~GppGtGKT~la~ala~~~~-------~~~~~i 154 (396)
.|.|++.+|+.+.-.+..-......+. .+ ..++...+|||+|+||||||++|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 589999999988443322111000000 00 1134456899999999999999999998542 344444
Q ss_pred ecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhh---------ccCcCCC
Q 016044 155 RISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD---------GFTTDQN 225 (396)
Q Consensus 155 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~---------~~~~~~~ 225 (396)
++...... .+........--........+++||||++.+....+. .++..|+ |....-+
T Consensus 531 gLTa~~~~-~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~-----------aLlEaMEqqtIsI~KaGi~~tL~ 598 (915)
T PTZ00111 531 GLTASIKF-NESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRL-----------SLYEVMEQQTVTIAKAGIVATLK 598 (915)
T ss_pred cccchhhh-cccccCcccccCCcEEEcCCCeEEecchhhCCHHHHH-----------HHHHHHhCCEEEEecCCcceecC
Confidence 44332110 0000000000000011124589999999998433221 2333332 2223335
Q ss_pred CcEEEEEecCCCC-------------CCcHHHHhccCCceE-eCCCCHHHHHHHHHHHhc
Q 016044 226 ARVMVLAATNRPS-------------ELDEAILRRLPQAFE-IGMPDRKERAQILKVILK 271 (396)
Q Consensus 226 ~~v~vI~atn~~~-------------~l~~~l~~R~~~~i~-~~~P~~~er~~il~~~l~ 271 (396)
.++.||||+|+.+ .+++++++|||.++. ++.|+.+.=..|..++++
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 6899999999742 478999999987764 477777766666665553
No 214
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1e-08 Score=98.57 Aligned_cols=232 Identities=18% Similarity=0.224 Sum_probs=148.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CcEEEEecccccch
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-----AVFINVRISNLMSK 162 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~-----~~~~~i~~~~l~~~ 162 (396)
..+.|.+.-+..+++++..++. ...+..+++.|.||+|||.+...+..... ...++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 5688999999999888765332 23357799999999999999887765442 24578888764322
Q ss_pred ------hhc---------hHHHHHHHHHHHHH-Hh-CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCC
Q 016044 163 ------WFG---------DAQKLVAAVFSLAY-KL-QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQN 225 (396)
Q Consensus 163 ------~~g---------~~~~~~~~~f~~a~-~~-~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 225 (396)
..+ ..+......|.... .. .+-++++||+|.|..+.+... ..+..+..-.+
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vL------------y~lFewp~lp~ 287 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVL------------YTLFEWPKLPN 287 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccccee------------eeehhcccCCc
Confidence 111 11112222233222 22 256999999999975544322 22233333457
Q ss_pred CcEEEEEecCCCCCCcHHHHh---c---cCCceEeCCCCHHHHHHHHHHHhcCCCCCCC--CCHHHHHHhCCCCcHHHHH
Q 016044 226 ARVMVLAATNRPSELDEAILR---R---LPQAFEIGMPDRKERAQILKVILKGEKVEEN--IDFDYLAGLCEGFTGSDLL 297 (396)
Q Consensus 226 ~~v~vI~atn~~~~l~~~l~~---R---~~~~i~~~~P~~~er~~il~~~l~~~~~~~~--~~l~~la~~~~g~s~~di~ 297 (396)
.++++||.+|..+.-|..|-+ | -+..+.|++++.++..+|+...+........ ..++..|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987755544433 2 3567899999999999999999987766533 346778888888886 666
Q ss_pred H---HHHHHHHHHHHHHHHHHhc----CCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 298 E---VCKQAAYFSIRELLDEERK----GKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 298 ~---l~~~A~~~a~~~~~~~~~~----~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
. +|+.|...+-.+.-..... +........|..+++..++.++-.+
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 4 4666655544433221111 1122233567788998888877554
No 215
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.08 E-value=4.9e-10 Score=103.88 Aligned_cols=155 Identities=24% Similarity=0.364 Sum_probs=102.7
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccc
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNL 159 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l 159 (396)
....|+.|+|.+...+.+.+-. ..++.. ..++||.|.+||||.++|++....+ ..+|+.++|..+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA-------~k~Aml-----DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQA-------QKLAML-----DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred cccchHHHhhccHHHHHHHHHH-------HHhhcc-----CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 4567888988887776664432 223322 3569999999999999999987644 679999999777
Q ss_pred cchh-----hchH--HHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHh-hcc------CcCCC
Q 016044 160 MSKW-----FGDA--QKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALW-DGF------TTDQN 225 (396)
Q Consensus 160 ~~~~-----~g~~--~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l-~~~------~~~~~ 225 (396)
.... +|.. ......+|+.| ..+.+|+|||..+.+.- ...++..+ ||. ..+-.
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~A---ngGTVlLDeIgEmSp~l-----------QaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQA---NGGTVLLDEIGEMSPRL-----------QAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhc---cCCeEEeehhhhcCHHH-----------HHHHHHHhcCCceeecCCcceEE
Confidence 4432 1111 12233455555 44899999999884332 22333333 221 11123
Q ss_pred CcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHH
Q 016044 226 ARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQ 264 (396)
Q Consensus 226 ~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~ 264 (396)
.+|.|||||..+ ..+-+.+..|+ .++.+..|...||..
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~ 377 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQ 377 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcc
Confidence 578999999753 35667788899 889999999988875
No 216
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.07 E-value=4e-10 Score=113.38 Aligned_cols=214 Identities=19% Similarity=0.224 Sum_probs=129.6
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh
Q 016044 87 FESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW 163 (396)
Q Consensus 87 ~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~ 163 (396)
+..++|.....+.+.+.+.. . .....++++.|++||||+++|+++.... +.+|+.++|..+...+
T Consensus 133 ~~~lig~s~~~~~v~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~ 200 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGR-------L-----SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDL 200 (463)
T ss_pred ccceeecCHHHHHHHHHHHH-------H-----hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHH
Confidence 34577777766666554431 1 1224679999999999999999998864 5799999998874332
Q ss_pred hchHHHHHHHHHH---------------HHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------
Q 016044 164 FGDAQKLVAAVFS---------------LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT------- 221 (396)
Q Consensus 164 ~g~~~~~~~~~f~---------------~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 221 (396)
.. ..+|. ......+++|||||++.+.... ...++..++...
T Consensus 201 ~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~-----------q~~ll~~l~~~~~~~~~~~ 263 (463)
T TIGR01818 201 IE------SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDA-----------QTRLLRVLADGEFYRVGGR 263 (463)
T ss_pred HH------HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHH-----------HHHHHHHHhcCcEEECCCC
Confidence 11 11111 0112246899999999984322 113333332211
Q ss_pred cCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHh----CCC
Q 016044 222 TDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGL----CEG 290 (396)
Q Consensus 222 ~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~----~~g 290 (396)
.....++.+|++|+.. ..+.+.+..|+ ..+.+..|+..+|.+-+..+.... +..++.. ..+
T Consensus 264 ~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLr~R~~Di~~l~~~~-------l~~~~~~~~~~~~~ 335 (463)
T TIGR01818 264 TPIKVDVRIVAATHQNLEALVRQGKFREDLFHRL-NVIRIHLPPLRERREDIPRLARHF-------LALAARELDVEPKL 335 (463)
T ss_pred ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHh-CcceecCCCcccchhhHHHHHHHH-------HHHHHHHhCCCCCC
Confidence 1112367888888753 35567888888 567777788777765444333211 1112221 246
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 291 FTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 291 ~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
+++..+..|..+.|..+++++.+.............|+.+|+...+.
T Consensus 336 ~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~~i~~~~l~~~~~ 382 (463)
T TIGR01818 336 LDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVSDLPAELA 382 (463)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHhchHHHh
Confidence 77777778887777777777766555433333345688888865553
No 217
>PRK15115 response regulator GlrR; Provisional
Probab=99.07 E-value=7.4e-10 Score=110.84 Aligned_cols=189 Identities=20% Similarity=0.321 Sum_probs=116.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHHHHHHHHHHH---------------HHHhCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQKLVAAVFSL---------------AYKLQPA 184 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~---------------a~~~~p~ 184 (396)
...++++|++|||||++|+++.... +.+|+.++|..+...... ..+|.. .....++
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE------SELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH------HHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 4579999999999999999998864 479999999887432211 112211 1122458
Q ss_pred EEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------cCCCCcEEEEEecCCC-------CCCcHHHHhccCC
Q 016044 185 IIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-------TDQNARVMVLAATNRP-------SELDEAILRRLPQ 250 (396)
Q Consensus 185 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~ 250 (396)
+|||||+|.|....+ ..++..++... .....++.+|++|+.. ..+.+.+..|+ .
T Consensus 231 tl~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~ 298 (444)
T PRK15115 231 TLFLDEIGDMPAPLQ-----------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-N 298 (444)
T ss_pred EEEEEccccCCHHHH-----------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-c
Confidence 999999999843321 13333332111 1112367899998853 24456666677 6
Q ss_pred ceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 016044 251 AFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG----LCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRP 326 (396)
Q Consensus 251 ~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~----~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~ 326 (396)
.+.+..|+..+|.+-+..++... +..++. ...++++..+..|..+.|..+++++.+.............
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~-------l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~ 371 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHL-------LRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPV 371 (444)
T ss_pred eeeecCCChHhccccHHHHHHHH-------HHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc
Confidence 77889999999976443332210 111121 1235778888888888888888887766554333333456
Q ss_pred CCHHHHHHHH
Q 016044 327 LSRLDLEKVL 336 (396)
Q Consensus 327 i~~~d~~~al 336 (396)
|+.+++...+
T Consensus 372 i~~~~l~~~~ 381 (444)
T PRK15115 372 ISDALVEQAL 381 (444)
T ss_pred cChhhhhhhh
Confidence 7777765443
No 218
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=5.1e-09 Score=94.17 Aligned_cols=173 Identities=19% Similarity=0.285 Sum_probs=116.4
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-C--Cc---------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-G--AV--------- 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-~--~~--------- 150 (396)
.+-+++.+.+.++....+..+.. -..-.++++|||+|+||.|.+.++.+++ | ..
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 34577888999999888876442 1113579999999999999999998865 2 11
Q ss_pred -----------------EEEEecccccchhhchHH-HHHHHHHHHHHHhCC---------cEEEEccccccccCCCCCch
Q 016044 151 -----------------FINVRISNLMSKWFGDAQ-KLVAAVFSLAYKLQP---------AIIFIDEVDSFLGQRRTSDH 203 (396)
Q Consensus 151 -----------------~~~i~~~~l~~~~~g~~~-~~~~~~f~~a~~~~p---------~vl~iDEid~l~~~~~~~~~ 203 (396)
.+++++++. |... -.+..+.....+.++ .+++|.|+|.|.... +
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA----Q 144 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA----Q 144 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH----H
Confidence 122222222 2222 233344433333222 599999999984433 2
Q ss_pred HHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCC-CCHH
Q 016044 204 EALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEEN-IDFD 282 (396)
Q Consensus 204 ~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~-~~l~ 282 (396)
.+++| .|+.+ ..++.+|..+|....+-+++++|+ ..+.+|.|+.++...++...+.+..+.-. --+.
T Consensus 145 ~aLRR-------TMEkY----s~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~ 212 (351)
T KOG2035|consen 145 HALRR-------TMEKY----SSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK 212 (351)
T ss_pred HHHHH-------HHHHH----hcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 23333 33333 345788889999999999999999 88999999999999999999988776522 2255
Q ss_pred HHHHhCCC
Q 016044 283 YLAGLCEG 290 (396)
Q Consensus 283 ~la~~~~g 290 (396)
.+|+.+.|
T Consensus 213 rIa~kS~~ 220 (351)
T KOG2035|consen 213 RIAEKSNR 220 (351)
T ss_pred HHHHHhcc
Confidence 66666664
No 219
>PRK08116 hypothetical protein; Validated
Probab=99.05 E-value=1.2e-09 Score=101.52 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=88.1
Q ss_pred ccCCCCCCcccccccChHH---HHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCc
Q 016044 77 VINPDHIDVEFESIGGLET---IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAV 150 (396)
Q Consensus 77 ~~~~~~~~~~~~~i~G~~~---~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~ 150 (396)
.+++.....+|+++.-.+. ++....+++. .|... ...+.|++|+|++|||||+||.++++++ +.+
T Consensus 74 ~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~-------~~~~~--~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~ 144 (268)
T PRK08116 74 LLDEKFRNSTFENFLFDKGSEKAYKIARKYVK-------KFEEM--KKENVGLLLWGSVGTGKTYLAACIANELIEKGVP 144 (268)
T ss_pred CCCHHHHhcchhcccCChHHHHHHHHHHHHHH-------HHHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 3444555567777653333 3334443332 22211 1224679999999999999999999975 778
Q ss_pred EEEEecccccchhhchH----HHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCC
Q 016044 151 FINVRISNLMSKWFGDA----QKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA 226 (396)
Q Consensus 151 ~~~i~~~~l~~~~~g~~----~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 226 (396)
++.++.+++........ ......++... ....+|+|||++.-.. . +. ....+...++.... .
T Consensus 145 v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~~----t--~~---~~~~l~~iin~r~~---~ 210 (268)
T PRK08116 145 VIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAERD----T--EW---AREKVYNIIDSRYR---K 210 (268)
T ss_pred EEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCCC----C--HH---HHHHHHHHHHHHHH---C
Confidence 88888877655432211 11111222222 2347999999964211 1 11 12244444444321 1
Q ss_pred cEEEEEecCCC-CC----CcHHHHhcc---CCceEeCCCCH
Q 016044 227 RVMVLAATNRP-SE----LDEAILRRL---PQAFEIGMPDR 259 (396)
Q Consensus 227 ~v~vI~atn~~-~~----l~~~l~~R~---~~~i~~~~P~~ 259 (396)
+..+|.|||.+ .. ++..+.+|+ ...+.+.-|+.
T Consensus 211 ~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 211 GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 23467777754 33 456777774 34456666654
No 220
>PRK12377 putative replication protein; Provisional
Probab=99.05 E-value=1e-09 Score=100.27 Aligned_cols=103 Identities=21% Similarity=0.283 Sum_probs=63.2
Q ss_pred cCCCCCCccccccc----ChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCc
Q 016044 78 INPDHIDVEFESIG----GLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAV 150 (396)
Q Consensus 78 ~~~~~~~~~~~~i~----G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~ 150 (396)
+.+...+.+|+++. |+..++.....++. .|.. ...+++|+||||||||+||.++++.+ |..
T Consensus 64 i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~-------~~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~ 131 (248)
T PRK12377 64 IQPLHRKCSFANYQVQNDGQRYALSQAKSIAD-------ELMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRS 131 (248)
T ss_pred CCcccccCCcCCcccCChhHHHHHHHHHHHHH-------HHHh-----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34455566788774 33334454444432 2221 13689999999999999999999876 667
Q ss_pred EEEEecccccchhhchHH--HHHHHHHHHHHHhCCcEEEEcccccc
Q 016044 151 FINVRISNLMSKWFGDAQ--KLVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 151 ~~~i~~~~l~~~~~g~~~--~~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
++.++.+++......... .....++... ....+|+|||++..
T Consensus 132 v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 132 VIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred eEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 777877776554321110 0011222222 35589999999765
No 221
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.01 E-value=1.7e-09 Score=110.86 Aligned_cols=52 Identities=29% Similarity=0.419 Sum_probs=42.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.++..|++++|+++++..|...+.. +++++|+||||||||++++++++.+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34567999999999999998765541 24799999999999999999998543
No 222
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.01 E-value=1.5e-09 Score=108.54 Aligned_cols=188 Identities=19% Similarity=0.263 Sum_probs=118.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHHHHHHHHHH---------------HHHHhCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQKLVAAVFS---------------LAYKLQPA 184 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~---------------~a~~~~p~ 184 (396)
...++++|.+||||+++|+++.... +.+|+.++|..+...... ..+|. ......++
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE------SELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH------HHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 4779999999999999999998754 478999999876433211 11111 11223568
Q ss_pred EEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------cCCCCcEEEEEecCCC-------CCCcHHHHhccCC
Q 016044 185 IIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-------TDQNARVMVLAATNRP-------SELDEAILRRLPQ 250 (396)
Q Consensus 185 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~ 250 (396)
+|||||++.|....+ ..++..++... ...+.++.+|++|+.+ ..+.+.+..|+ .
T Consensus 236 tl~ldei~~l~~~~q-----------~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~ 303 (441)
T PRK10365 236 TLFLDEIGDISPMMQ-----------VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-N 303 (441)
T ss_pred EEEEeccccCCHHHH-----------HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-c
Confidence 999999999843321 13333332211 1112357788888753 24566677777 6
Q ss_pred ceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHH----hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 016044 251 AFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAG----LCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRP 326 (396)
Q Consensus 251 ~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~----~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~ 326 (396)
.+.+..|+..+|.+-+..+.... +..++. ...++++..+..|+.+.|..+++++.+..+..........
T Consensus 304 ~~~i~~ppLreR~~Di~~l~~~~-------l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~ 376 (441)
T PRK10365 304 VVAIEVPSLRQRREDIPLLAGHF-------LQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEY 376 (441)
T ss_pred cceecCCChhhcchhHHHHHHHH-------HHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 78889999998877444433211 112222 1235888888888888888888888766555333334456
Q ss_pred CCHHHHHHH
Q 016044 327 LSRLDLEKV 335 (396)
Q Consensus 327 i~~~d~~~a 335 (396)
|+.+|+...
T Consensus 377 i~~~~l~~~ 385 (441)
T PRK10365 377 ISERELPLA 385 (441)
T ss_pred cchHhCchh
Confidence 777777543
No 223
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.00 E-value=3.4e-09 Score=105.58 Aligned_cols=177 Identities=24% Similarity=0.251 Sum_probs=101.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE-Eecccccch--h--
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN-VRISNLMSK--W-- 163 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~-i~~~~l~~~--~-- 163 (396)
+|.|++++|+.|--.+. =.....+..++..+..-+|||+|.||||||.+.+.+++-...-.+. -..+.-.+. +
T Consensus 430 sIye~edvKkglLLqLf--GGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLF--GGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHh--cCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 58899999998732221 1222223333224445689999999999999999999855321111 111100000 0
Q ss_pred -hchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC----
Q 016044 164 -FGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS---- 238 (396)
Q Consensus 164 -~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~---- 238 (396)
-+++.+.+-.- ...-....++.+|||||.+..+..+..++.++.. ++--...|+...-+.+.-|+|++|+..
T Consensus 508 rd~dtkqlVLes-GALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQ--TvSIAKAGII~sLNAR~SVLAaANP~~skyn 584 (804)
T KOG0478|consen 508 KDPDTRQLVLES-GALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQ--TLSIAKAGIIASLNARCSVLAAANPIRSKYN 584 (804)
T ss_pred ecCccceeeeec-CcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHh--hhhHhhcceeeeccccceeeeeeccccccCC
Confidence 00111111000 0001125589999999999655555555555432 222233566556677889999999532
Q ss_pred ---------CCcHHHHhccCCce-EeCCCCHHHHHHHHHHHh
Q 016044 239 ---------ELDEAILRRLPQAF-EIGMPDRKERAQILKVIL 270 (396)
Q Consensus 239 ---------~l~~~l~~R~~~~i-~~~~P~~~er~~il~~~l 270 (396)
.|++.|++||+.++ -+..||+..=+.+-.++.
T Consensus 585 p~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 585 PNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred CCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 57899999998776 457777764445555444
No 224
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.99 E-value=1.2e-08 Score=102.40 Aligned_cols=202 Identities=19% Similarity=0.265 Sum_probs=130.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEEecccccch----------hhchH------HHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES----------GAVFINVRISNLMSK----------WFGDA------QKLVAAVFSL 177 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~----------~~~~~~i~~~~l~~~----------~~g~~------~~~~~~~f~~ 177 (396)
..+++.|-||||||.+++.+..++ ...|+.+|+-.+.+. +.|+. -..+..-|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 468999999999999999997744 356788887665442 11111 1111112221
Q ss_pred H-HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC----cHHHHhccC-Cc
Q 016044 178 A-YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL----DEAILRRLP-QA 251 (396)
Q Consensus 178 a-~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l----~~~l~~R~~-~~ 251 (396)
. ....++||+|||+|.|....+ ..+..+-.+....+.+++||+.+|..+.. ...+-+|++ .+
T Consensus 503 ~k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 1 122468999999999976553 23333344555667889999998875532 223333543 57
Q ss_pred eEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCH
Q 016044 252 FEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGS--DLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSR 329 (396)
Q Consensus 252 i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~--di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~ 329 (396)
+.|.+.+..+..+|+...+.+...-.+...+-+|+.....||. .-..+|++|...|-.+.... .......|+.
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~-----k~~~~q~v~~ 645 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG-----KLAVSQLVGI 645 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc-----cccccceeeh
Confidence 7899999999999999999877443333455556655555553 34467888888777765411 2233467889
Q ss_pred HHHHHHHHhcccc
Q 016044 330 LDLEKVLTTSRKT 342 (396)
Q Consensus 330 ~d~~~al~~~~~~ 342 (396)
.|+.+|+..+..+
T Consensus 646 ~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 646 LHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887543
No 225
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.96 E-value=3.1e-09 Score=88.74 Aligned_cols=127 Identities=22% Similarity=0.407 Sum_probs=75.1
Q ss_pred cChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEecccccchhhchH
Q 016044 91 GGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---AVFINVRISNLMSKWFGDA 167 (396)
Q Consensus 91 ~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~~~~l~~~~~g~~ 167 (396)
+|.....+.+++.+. .+.. ...+|+|+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~-------~~a~-----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLE-------RLAK-----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------- 61 (138)
T ss_dssp --SCHHHHHHHHHHH-------HHHC-----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------
T ss_pred CCCCHHHHHHHHHHH-------HHhC-----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------
Confidence 355566666665553 2222 247799999999999999999998764 466777776643
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC-C------CC
Q 016044 168 QKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP-S------EL 240 (396)
Q Consensus 168 ~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~-~------~l 240 (396)
..++.. ..+++|||+|+|.+.... ...++..+.... ..++.+|+++..+ . .+
T Consensus 62 ----~~~l~~---a~~gtL~l~~i~~L~~~~-----------Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~ 120 (138)
T PF14532_consen 62 ----AELLEQ---AKGGTLYLKNIDRLSPEA-----------QRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRF 120 (138)
T ss_dssp ----HHHHHH---CTTSEEEEECGCCS-HHH-----------HHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTH
T ss_pred ----HHHHHH---cCCCEEEECChHHCCHHH-----------HHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccch
Confidence 222332 366999999999983321 113334343322 3445677666532 2 46
Q ss_pred cHHHHhccCCceEeCCCC
Q 016044 241 DEAILRRLPQAFEIGMPD 258 (396)
Q Consensus 241 ~~~l~~R~~~~i~~~~P~ 258 (396)
++.|..|+ ..+.+..|+
T Consensus 121 ~~~L~~~l-~~~~i~lPp 137 (138)
T PF14532_consen 121 SPDLYYRL-SQLEIHLPP 137 (138)
T ss_dssp HHHHHHHC-STCEEEE--
T ss_pred hHHHHHHh-CCCEEeCCC
Confidence 67888888 444555553
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=9.9e-09 Score=97.75 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=85.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC-------------------------cEEEEecccc---cchh-hchHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGA-------------------------VFINVRISNL---MSKW-FGDAQKLVA 172 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~-------------------------~~~~i~~~~l---~~~~-~g~~~~~~~ 172 (396)
-++.+||+||+|+|||++|+.+|+.+.+ .|+.+.+..- .++. ..-.-..++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 3688999999999999999999997532 1233322110 0000 000122344
Q ss_pred HHHHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhcc
Q 016044 173 AVFSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRL 248 (396)
Q Consensus 173 ~~f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~ 248 (396)
.+...+.. ....|++||+++.+... ..+.+++.++.. +..+.+|.+|+.++.+.+.+.+|+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-----------a~naLLk~LEep----~~~~~~Ilvth~~~~ll~ti~SRc 164 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQ-----------AANSLLKVLEEP----PPQVVFLLVSHAADKVLPTIKSRC 164 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHH-----------HHHHHHHHHHhC----cCCCEEEEEeCChHhChHHHHHHh
Confidence 44444432 23469999999988322 223455555543 234567778888899999999999
Q ss_pred CCceEeCCCCHHHHHHHHHH
Q 016044 249 PQAFEIGMPDRKERAQILKV 268 (396)
Q Consensus 249 ~~~i~~~~P~~~er~~il~~ 268 (396)
..+.|++|+.++..+.|..
T Consensus 165 -~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 165 -RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -hhhcCCCCCHHHHHHHHHh
Confidence 8999999999998887765
No 227
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.92 E-value=2e-09 Score=109.79 Aligned_cols=172 Identities=28% Similarity=0.334 Sum_probs=98.3
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEE-EEecccc-------
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI-NVRISNL------- 159 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~-~i~~~~l------- 159 (396)
-.|.|++.+|+.+--.+.. .-+.....+..++.--+|||.|.||+|||.|.+.+++-+...++ +..++.-
T Consensus 286 PsIyG~e~VKkAilLqLfg--Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFG--GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred ccccCcHHHHHHHHHHhcC--CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence 3589999999988433221 11111111222333467999999999999999999986543222 2222111
Q ss_pred -----cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec
Q 016044 160 -----MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT 234 (396)
Q Consensus 160 -----~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 234 (396)
.+.|.-+... .-...++|++|||+|.+........++++.+..-.. .-.|+...-+.+.-|+||+
T Consensus 364 ~rd~~tge~~LeaGA--------LVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsI--aKAGI~atLnARcsvLAAa 433 (682)
T COG1241 364 VRDKVTGEWVLEAGA--------LVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISI--AKAGITATLNARCSVLAAA 433 (682)
T ss_pred EEccCCCeEEEeCCE--------EEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeee--cccceeeecchhhhhhhhh
Confidence 1111111100 112256999999999985444333333333211111 0123333345677899999
Q ss_pred CCCC-------------CCcHHHHhccCCceEe-CCCCHHHHHHHHHHHhc
Q 016044 235 NRPS-------------ELDEAILRRLPQAFEI-GMPDRKERAQILKVILK 271 (396)
Q Consensus 235 n~~~-------------~l~~~l~~R~~~~i~~-~~P~~~er~~il~~~l~ 271 (396)
|+.. .+++++++|||..+.+ ..|+.+.=..+.++.+.
T Consensus 434 NP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 434 NPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred CCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHH
Confidence 9754 5788999999987755 55777656666666554
No 228
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.90 E-value=2.9e-08 Score=99.81 Aligned_cols=203 Identities=16% Similarity=0.222 Sum_probs=117.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc-
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL- 159 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l- 159 (396)
.+.+.+.+|++-+.+-.++++.++... +.. ..+.+-+||+||||||||++++.+|+++|..+.+...+..
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~------~~~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~ 82 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEM------FSG---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSF 82 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHH------hcc---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCc
Confidence 455678899999988888888888632 211 1223467889999999999999999999988877532211
Q ss_pred c------chhhch---HH---HH---HHHH-HHHHHH-----------hCCcEEEEccccccccCCCCCchHHHHhhHHH
Q 016044 160 M------SKWFGD---AQ---KL---VAAV-FSLAYK-----------LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTE 212 (396)
Q Consensus 160 ~------~~~~g~---~~---~~---~~~~-f~~a~~-----------~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 212 (396)
. ..+.+. .. .. .... +..++. ..+.||+|+|+-.++.... ......+.+
T Consensus 83 ~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~----~~f~~~L~~ 158 (519)
T PF03215_consen 83 RESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDT----SRFREALRQ 158 (519)
T ss_pred cccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhH----HHHHHHHHH
Confidence 0 001100 00 00 1111 111111 2357999999986543322 222222222
Q ss_pred HHHHhhccCcCCCC-cEEEEEe-cC------CC--------CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCC-
Q 016044 213 FMALWDGFTTDQNA-RVMVLAA-TN------RP--------SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGE- 273 (396)
Q Consensus 213 ll~~l~~~~~~~~~-~v~vI~a-tn------~~--------~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~- 273 (396)
++ . .... ++++|.+ ++ .. ..+++.++. ++ ..|.|.+-...-.+..|+.++..+
T Consensus 159 ~l---~----~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 159 YL---R----SSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HH---H----cCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHh
Confidence 22 2 1223 6666666 11 11 135667766 34 778999888888777777776543
Q ss_pred -------CCCCCCC-HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 016044 274 -------KVEENID-FDYLAGLCEGFTGSDLLEVCKQAAYFSI 308 (396)
Q Consensus 274 -------~~~~~~~-l~~la~~~~g~s~~di~~l~~~A~~~a~ 308 (396)
......+ ++.|+..+. +||+.++..-.+.+.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 1111122 556666555 599988877666666
No 229
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.89 E-value=7.6e-09 Score=94.30 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=49.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchH---HHHHHHHHHHHHHhCCcEEEEcccccc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDA---QKLVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~---~~~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
.+++|+|+||||||+|+.++++++ |..++.++..++........ ......++... ....+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 589999999999999999999977 67888888877765433221 11112233332 24689999999875
No 230
>PRK08181 transposase; Validated
Probab=98.87 E-value=2.5e-08 Score=92.23 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=49.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchH-HHHHHHHHHHHHHhCCcEEEEccccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDA-QKLVAAVFSLAYKLQPAIIFIDEVDSFL 195 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~vl~iDEid~l~ 195 (396)
..+++|+||||||||+||.+++.++ |..++.++..++........ .......+... ..+.+|+|||++...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 4689999999999999999998744 77788888777766542211 11122223322 245899999998764
No 231
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.1e-09 Score=98.47 Aligned_cols=98 Identities=27% Similarity=0.498 Sum_probs=69.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch-hhch-HHHHHHHHHHHH----HHhCCcEEEEcccccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK-WFGD-AQKLVAAVFSLA----YKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~-~~g~-~~~~~~~~f~~a----~~~~p~vl~iDEid~l~~ 196 (396)
..+|||.||+|+|||.||+.+|+-++.||..++|..+... |+|+ .+..+..++..| .+.+.+|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 3689999999999999999999999999999999998754 5554 445555555544 334569999999999973
Q ss_pred CCCCC--chH-HHHhhHHHHHHHhhcc
Q 016044 197 QRRTS--DHE-ALTNMKTEFMALWDGF 220 (396)
Q Consensus 197 ~~~~~--~~~-~~~~~~~~ll~~l~~~ 220 (396)
+...- ..+ ..+.+...++++++|.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccccccchhHHHHHHHHhccc
Confidence 32211 111 1223445677777654
No 232
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.86 E-value=8.4e-09 Score=94.67 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=108.3
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------EEEE
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------FINV 154 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------~~~i 154 (396)
...+-...++++++++...+.++... ..-.+.|+|||||+|||+...+.|..+-.+ +..+
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~~~--------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYSGM--------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhccC--------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 55677889999999999888765321 112389999999999999999999987543 1112
Q ss_pred ecccccchhhchHHHHHHHHHHHHHH-------hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCc
Q 016044 155 RISNLMSKWFGDAQKLVAAVFSLAYK-------LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR 227 (396)
Q Consensus 155 ~~~~l~~~~~g~~~~~~~~~f~~a~~-------~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 227 (396)
+.++-.+. +-.. .-...|...+. ..+..+++||.|.+.... +.+++|++ ..+ ..+
T Consensus 100 naSd~rgi--d~vr-~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~A----QnALRRvi-------ek~----t~n 161 (360)
T KOG0990|consen 100 NASDDRGI--DPVR-QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDA----QNALRRVI-------EKY----TAN 161 (360)
T ss_pred hccCccCC--cchH-HHHHHHHhhccceeccccCceeEEEecchhHhhHHH----HHHHHHHH-------HHh----ccc
Confidence 22221111 1111 11122333331 245799999999984433 22333322 222 446
Q ss_pred EEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC
Q 016044 228 VMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE 276 (396)
Q Consensus 228 v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~ 276 (396)
+.++..+|.+..+.+++++|| ..+.|.+.+...-...+.+++......
T Consensus 162 ~rF~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 162 TRFATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred eEEEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchhh
Confidence 677788899999999999999 888898888888888888888765544
No 233
>PF13173 AAA_14: AAA domain
Probab=98.84 E-value=1.3e-08 Score=83.74 Aligned_cols=118 Identities=24% Similarity=0.367 Sum_probs=69.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC--CcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG--AVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS 201 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~--~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~ 201 (396)
+.++|+||+|||||++++.+++.+. ..++.+++.+.........+ ....+.+. ...++.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLEL-IKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHh-hccCCcEEEEehhhhhc------
Confidence 5689999999999999999998876 77788887765443211111 11222222 22256899999999871
Q ss_pred chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC----CCcHHHHhccCCceEeCCCCHHH
Q 016044 202 DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS----ELDEAILRRLPQAFEIGMPDRKE 261 (396)
Q Consensus 202 ~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~----~l~~~l~~R~~~~i~~~~P~~~e 261 (396)
.+...+....+. ..++.+|.|+.... .....+..|. ..+++.+.+..|
T Consensus 75 ------~~~~~lk~l~d~-----~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ------DWEDALKFLVDN-----GPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred ------cHHHHHHHHHHh-----ccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 111122222332 12344454444332 2334455576 577788877766
No 234
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.77 E-value=1.7e-08 Score=102.96 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=85.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC--CcEEEEecccccchhhchH--HHHH--------HHHHHHHHHhCCcEEEEccc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG--AVFINVRISNLMSKWFGDA--QKLV--------AAVFSLAYKLQPAIIFIDEV 191 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~--~~~~~i~~~~l~~~~~g~~--~~~~--------~~~f~~a~~~~p~vl~iDEi 191 (396)
.||+|.|++|+||++++++++.-+. .+|+.++.+--....+|.. +..+ ..++.. ...+|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~---Ah~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAE---ADGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceee---ccCCEEEecCc
Confidence 6899999999999999999999875 4888887765555555543 1111 111222 23489999999
Q ss_pred cccccCCCCCchHHHHhhHHHHHHHh---------hccCcCCCCcEEEEEecCCC---CCCcHHHHhccCCceEeCCCCH
Q 016044 192 DSFLGQRRTSDHEALTNMKTEFMALW---------DGFTTDQNARVMVLAATNRP---SELDEAILRRLPQAFEIGMPDR 259 (396)
Q Consensus 192 d~l~~~~~~~~~~~~~~~~~~ll~~l---------~~~~~~~~~~v~vI~atn~~---~~l~~~l~~R~~~~i~~~~P~~ 259 (396)
..+..+ +...++..+ ++.....+.++++|++.|.. ..++++++.||+..+.++.|+.
T Consensus 103 n~~~~~-----------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~ 171 (584)
T PRK13406 103 ERLEPG-----------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLAL 171 (584)
T ss_pred ccCCHH-----------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCCh
Confidence 988332 222344433 33344456789999985532 3589999999999999998876
Q ss_pred HHH
Q 016044 260 KER 262 (396)
Q Consensus 260 ~er 262 (396)
.+.
T Consensus 172 ~~~ 174 (584)
T PRK13406 172 RDA 174 (584)
T ss_pred HHh
Confidence 543
No 235
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.73 E-value=1e-07 Score=94.53 Aligned_cols=201 Identities=22% Similarity=0.225 Sum_probs=116.5
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEE-ecc---cc---
Q 016044 87 FESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINV-RIS---NL--- 159 (396)
Q Consensus 87 ~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i-~~~---~l--- 159 (396)
|..|.|++.+|.-+--.+.-=. ......+-.++..-+|++.|.||+||+.+.++.+.-+....+.. +.+ .|
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv--~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGV--HKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred CccccchHHHHhhHHHHHhCCc--cccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 5679999999998743222100 01111111234446799999999999999999998553332221 111 11
Q ss_pred ------cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 160 ------MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 160 ------~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
.+.|.-+... .--...+|.+|||+|.+.-+.+...+++++.....+. -.|+...-+.+.-|+||
T Consensus 422 VvkD~esgdf~iEAGA--------LmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIa--KAGv~aTLnARtSIlAA 491 (764)
T KOG0480|consen 422 VVKDEESGDFTIEAGA--------LMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIA--KAGVVATLNARTSILAA 491 (764)
T ss_pred EEecCCCCceeeecCc--------EEEccCceEEechhcccChHhHHHHHHHHHhheehhe--ecceEEeecchhhhhhh
Confidence 1111111100 0112458999999999955444434444433211111 12333344667779999
Q ss_pred cCCCC-------------CCcHHHHhccCCce-EeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHH
Q 016044 234 TNRPS-------------ELDEAILRRLPQAF-EIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEV 299 (396)
Q Consensus 234 tn~~~-------------~l~~~l~~R~~~~i-~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l 299 (396)
+|+.. .++.++++|||..+ .+.-|++..=..|-++++..+..-.+. ......|+-.+++..
T Consensus 492 ANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~-----~~~~~~~~~e~vrkY 566 (764)
T KOG0480|consen 492 ANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA-----TERVCVYTLEQVRKY 566 (764)
T ss_pred cCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc-----ccccccccHHHHHHH
Confidence 99743 46789999998766 568899988888888888643322111 111145777777776
Q ss_pred HHHHH
Q 016044 300 CKQAA 304 (396)
Q Consensus 300 ~~~A~ 304 (396)
++.|.
T Consensus 567 i~yAR 571 (764)
T KOG0480|consen 567 IRYAR 571 (764)
T ss_pred HHHHH
Confidence 66654
No 236
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.73 E-value=4.8e-08 Score=88.44 Aligned_cols=178 Identities=22% Similarity=0.343 Sum_probs=89.8
Q ss_pred cChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC---cEEEEec-ccccc----h
Q 016044 91 GGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA---VFINVRI-SNLMS----K 162 (396)
Q Consensus 91 ~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~---~~~~i~~-~~l~~----~ 162 (396)
+|.++-.+.|.+++.. .+...++|+||+|+|||++++.+...... ..+.+.+ ..... .
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 5666666777654431 12467999999999999999999997732 1111111 00000 0
Q ss_pred h------------------------------hchHHHHHHHHHHHHHHh-CCcEEEEccccccc-cCCCCCchHHHHhhH
Q 016044 163 W------------------------------FGDAQKLVAAVFSLAYKL-QPAIIFIDEVDSFL-GQRRTSDHEALTNMK 210 (396)
Q Consensus 163 ~------------------------------~g~~~~~~~~~f~~a~~~-~p~vl~iDEid~l~-~~~~~~~~~~~~~~~ 210 (396)
. .......+..++...... ...+|+|||++.+. ... .. ....
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--~~----~~~~ 141 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--ED----KDFL 141 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--TT----HHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--ch----HHHH
Confidence 0 011223344444444433 34899999999997 211 11 1223
Q ss_pred HHHHHHhhccCcCCCCcEEEEEecCCCC------CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC---CCCCH
Q 016044 211 TEFMALWDGFTTDQNARVMVLAATNRPS------ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE---ENIDF 281 (396)
Q Consensus 211 ~~ll~~l~~~~~~~~~~v~vI~atn~~~------~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~---~~~~l 281 (396)
..+...++.... ..++.+|.++.... .-...+..|+.. +.+++.+.++..++++..+... .. ++.++
T Consensus 142 ~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~ 217 (234)
T PF01637_consen 142 KSLRSLLDSLLS--QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHH
T ss_pred HHHHHHHhhccc--cCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHH
Confidence 344455554332 22333333332211 122345567755 9999999999999999987665 21 34456
Q ss_pred HHHHHhCCCCc
Q 016044 282 DYLAGLCEGFT 292 (396)
Q Consensus 282 ~~la~~~~g~s 292 (396)
+.+...+.|..
T Consensus 218 ~~i~~~~gG~P 228 (234)
T PF01637_consen 218 EEIYSLTGGNP 228 (234)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHhCCCH
Confidence 77777777743
No 237
>PRK06526 transposase; Provisional
Probab=98.71 E-value=5.8e-08 Score=89.33 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=46.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchH-HHHHHHHHHHHHHhCCcEEEEccccccc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDA-QKLVAAVFSLAYKLQPAIIFIDEVDSFL 195 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~vl~iDEid~l~ 195 (396)
..+.+++|+||||||||++|.+++.++ |..+..++++++........ .......+.. ...+.+|+|||++.+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 345789999999999999999998764 56666666665544332110 0111111211 2346899999999763
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.70 E-value=4.7e-08 Score=93.07 Aligned_cols=112 Identities=28% Similarity=0.360 Sum_probs=66.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchH---HHHHHHHHHHHHHhCCcEEEEcccccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDA---QKLVAAVFSLAYKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~---~~~~~~~f~~a~~~~p~vl~iDEid~l~~ 196 (396)
..+++|+||+|+|||+|+.++|+++ |..++.++..++........ .......+... ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 3789999999999999999999975 77888888877765432210 00111112222 2447999999977522
Q ss_pred CCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC-CCC----CcHHHHhcc
Q 016044 197 QRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR-PSE----LDEAILRRL 248 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~-~~~----l~~~l~~R~ 248 (396)
.. . ....+...++.... . +-.+|.|||. +.. +++.+.+|+
T Consensus 261 t~------~---~~~~Lf~iin~R~~--~-~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 261 TE------F---SKSELFNLINKRLL--R-QKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred CH------H---HHHHHHHHHHHHHH--C-CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 11 1 11234444443321 1 1235667774 333 456777775
No 239
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=8.8e-08 Score=78.85 Aligned_cols=73 Identities=25% Similarity=0.409 Sum_probs=47.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc--------CCcEEEEecccccch--h------------h--chHHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES--------GAVFINVRISNLMSK--W------------F--GDAQKLVAAVFSLA 178 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~--------~~~~~~i~~~~l~~~--~------------~--g~~~~~~~~~f~~a 178 (396)
.+.++++||||+|||++++.++... +.+++.++++...+. + . .........+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4668999999999999999999977 677888887544311 0 0 12334444444555
Q ss_pred HHhCCcEEEEccccccc
Q 016044 179 YKLQPAIIFIDEVDSFL 195 (396)
Q Consensus 179 ~~~~p~vl~iDEid~l~ 195 (396)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55444599999999974
No 240
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.64 E-value=2.6e-07 Score=87.29 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=48.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHH-HHHHHHHHHHHHhCCcEEEEcccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQ-KLVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~-~~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
.+|++|+||+|||||+|+.++|+++ |..+..++.+++......... ......+... ....+|+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 5799999999999999999999977 677788887776554322111 1122222222 24589999999763
No 241
>PRK09183 transposase/IS protein; Provisional
Probab=98.63 E-value=3e-07 Score=84.99 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=48.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEecccccchhhch-HHHHHHHHHHHHHHhCCcEEEEcccccc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRISNLMSKWFGD-AQKLVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
...+++|+||||||||+++.+++.. .|..+..+++.++....... ....+...+... ...+.+++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3578999999999999999999765 36677777776665433211 111223333332 235689999999875
No 242
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.63 E-value=6.4e-07 Score=81.09 Aligned_cols=133 Identities=21% Similarity=0.235 Sum_probs=76.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD 202 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~ 202 (396)
..+-.++||+|||||.+++.+|+.+|.+++.++|++.++. ..+..++.-+... .+-+++||++.+... .
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~~~----v 100 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLSEE----V 100 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSSHH----H
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-CchhhhhhhhhhhHH----H
Confidence 3567899999999999999999999999999999886542 3444555444333 489999999998321 2
Q ss_pred hHHHHhhHHHHHHHhhccC---------cCCCCcEEEEEecCC----CCCCcHHHHhccCCceEeCCCCHHHHHHHHH
Q 016044 203 HEALTNMKTEFMALWDGFT---------TDQNARVMVLAATNR----PSELDEAILRRLPQAFEIGMPDRKERAQILK 267 (396)
Q Consensus 203 ~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vI~atn~----~~~l~~~l~~R~~~~i~~~~P~~~er~~il~ 267 (396)
...+...+..+...+..-. ..-+..+-++.|.|+ ...+|+.++.-| +.+.+..||..-..+++-
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHHH
Confidence 2222222222222222111 011223456667773 347889998878 888999999877666543
No 243
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=2.6e-07 Score=85.86 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=76.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE--------EEecccccchh-hc----hHHHHHHHHHHHHH----HhCCcE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFI--------NVRISNLMSKW-FG----DAQKLVAAVFSLAY----KLQPAI 185 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~--------~i~~~~l~~~~-~g----~~~~~~~~~f~~a~----~~~p~v 185 (396)
++.+||+||+|+||+.+|.++|..+-+.-- .-..+++..-. .+ -.-..++.+...+. .....|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 688999999999999999999987643210 00111211000 00 01122333333332 223469
Q ss_pred EEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCC
Q 016044 186 IFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 186 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P 257 (396)
++||++|.+.. ...+.+++.++ +++.++++|..|+.++.+.+.+++|| ..+.|+++
T Consensus 99 ~ii~~ad~mt~-----------~AaNaLLK~LE----EPp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 99 YIIHEADRMTL-----------DAISAFLKVLE----DPPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred EEEechhhcCH-----------HHHHHHHHHhh----cCCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 99999999832 22336666665 45778899999999999999999999 78888765
No 244
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.62 E-value=3.3e-08 Score=91.97 Aligned_cols=140 Identities=20% Similarity=0.342 Sum_probs=78.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC-c--EEEEecccccchhhchHHHHHHHHHHHH----H-------HhCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGA-V--FINVRISNLMSKWFGDAQKLVAAVFSLA----Y-------KLQPAIIFI 188 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~-~--~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~-------~~~p~vl~i 188 (396)
.+++||+||+|||||++++.+-+.+.. . ...++++... +...+..+.+.. + ..+..|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 478999999999999999998776542 2 2334443321 112222221110 0 112369999
Q ss_pred ccccccccCCCCCchHHHHhhHHHHHHHhhccCcCC------CCcEEEEEecCCCC---CCcHHHHhccCCceEeCCCCH
Q 016044 189 DEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQ------NARVMVLAATNRPS---ELDEAILRRLPQAFEIGMPDR 259 (396)
Q Consensus 189 DEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~v~vI~atn~~~---~l~~~l~~R~~~~i~~~~P~~ 259 (396)
||++.-.... -+.+.. ...+.+++.. .|+.... -.++.++||++++. .+++.+.|.| .++.++.|+.
T Consensus 107 DDlN~p~~d~-ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 107 DDLNMPQPDK-YGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp ETTT-S---T-TS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred cccCCCCCCC-CCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 9998643332 122222 2233333331 2332211 13578899988643 4788899888 8899999999
Q ss_pred HHHHHHHHHHhcC
Q 016044 260 KERAQILKVILKG 272 (396)
Q Consensus 260 ~er~~il~~~l~~ 272 (396)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998887753
No 245
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=2.9e-06 Score=79.19 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=90.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcE-------EE---------Eecccccchhh-ch--HHHHHHHHHHHHH---
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVF-------IN---------VRISNLMSKWF-GD--AQKLVAAVFSLAY--- 179 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~~-------~~---------i~~~~l~~~~~-g~--~~~~~~~~f~~a~--- 179 (396)
-++.+||+|| +||+++|+++|..+-+.- -. -+.+++.--.. |. .-..++.+...+.
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 3688999996 689999999998653211 00 01122211000 10 1123333333322
Q ss_pred -HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCC
Q 016044 180 -KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPD 258 (396)
Q Consensus 180 -~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~ 258 (396)
.....|++||++|.+.. ...+.+++.++ +++.++++|.+|+.++.+.+.+++|+ ..+.|+. +
T Consensus 101 ~~~~~kV~II~~ad~m~~-----------~AaNaLLKtLE----EPp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~ 163 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV-----------NAANSLLKVIE----EPQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK-N 163 (290)
T ss_pred ccCCcEEEEeehhhhcCH-----------HHHHHHHHHhc----CCCCCeEEEEEECChhhCchHHHHcc-eeeeCCC-c
Confidence 22347999999999832 22346666665 45667899999999999999999999 8888966 5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 259 RKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 259 ~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
.++..+++.. .++.. +...++....| +++....+...
T Consensus 164 ~~~~~~~L~~----~g~~~--~~a~~la~~~~-s~~~A~~l~~~ 200 (290)
T PRK07276 164 EAYLIQLLEQ----KGLLK--TQAELLAKLAQ-STSEAEKLAQN 200 (290)
T ss_pred HHHHHHHHHH----cCCCh--HHHHHHHHHCC-CHHHHHHHhCC
Confidence 5555555542 22221 22333434445 56665555543
No 246
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.61 E-value=2.2e-07 Score=89.92 Aligned_cols=212 Identities=25% Similarity=0.245 Sum_probs=121.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhhh-cCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe-cccccchhhch
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFS-HGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR-ISNLMSKWFGD 166 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~-~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~-~~~l~~~~~g~ 166 (396)
+|.|++++|+.|--+++. -++.-. .|..++..-+|+|.|.||+.||.|.+.+.+-.....+.-. ++. .+|-
T Consensus 343 EIyGheDVKKaLLLlLVG---gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGL 415 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG---GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGL 415 (721)
T ss_pred hhccchHHHHHHHHHhhC---CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----cccc
Confidence 589999999998655442 122111 2222444567999999999999999999885433222211 111 0111
Q ss_pred HHHHHHHHH-H-------HHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 167 AQKLVAAVF-S-------LAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 167 ~~~~~~~~f-~-------~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
+....+.-. . ..-....+|.+|||+|.+........++.++.....+. -.|+.+.-+.+..|++++|+.+
T Consensus 416 TAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIa--KAGI~TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 416 TAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIA--KAGINTTLNARTSILAAANPAY 493 (721)
T ss_pred chhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhh--hhccccchhhhHHhhhhcCccc
Confidence 111110000 0 00011458999999999977766666666554322222 2455555577888999999633
Q ss_pred -------------CCcHHHHhccCCceEe-CCCCHHHHHHHHHHHhc----CCCCC---CCCCHHH------HHHhCCCC
Q 016044 239 -------------ELDEAILRRLPQAFEI-GMPDRKERAQILKVILK----GEKVE---ENIDFDY------LAGLCEGF 291 (396)
Q Consensus 239 -------------~l~~~l~~R~~~~i~~-~~P~~~er~~il~~~l~----~~~~~---~~~~l~~------la~~~~g~ 291 (396)
.|+.+|++||+..+.+ ..|+.+.=..+.+++.- ..... ..++.+. +++...-+
T Consensus 494 GRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~ 573 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPV 573 (721)
T ss_pred cccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCC
Confidence 5789999999876644 67887776666666542 11111 1133222 24444445
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 016044 292 TGSDLLEVCKQAAYFSIR 309 (396)
Q Consensus 292 s~~di~~l~~~A~~~a~~ 309 (396)
.+.++...+..|....-+
T Consensus 574 vp~~l~dyi~~AYv~~Rr 591 (721)
T KOG0482|consen 574 VPEALADYITGAYVELRR 591 (721)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 666776666655544333
No 247
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.60 E-value=1.7e-07 Score=92.76 Aligned_cols=173 Identities=27% Similarity=0.325 Sum_probs=96.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe---------cc--
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR---------IS-- 157 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~---------~~-- 157 (396)
+|.|++++|.++.-.+..=. +.--..+..++.--++||+|.|||||+.+.|.+++-....++... +.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv--~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGV--PKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred hhhchHHHHHHHHHHHhcCC--ccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 58999999999865443211 111111111333457999999999999999999986554443321 11
Q ss_pred --cccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecC
Q 016044 158 --NLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATN 235 (396)
Q Consensus 158 --~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 235 (396)
-+...|.-+.... - ....+|++|||+|.+......+.+++++..-..+-+ .|+...-..+..+|+|+|
T Consensus 528 KdPvtrEWTLEaGAL-----V---LADkGvClIDEFDKMndqDRtSIHEAMEQQSISISK--AGIVtsLqArctvIAAan 597 (854)
T KOG0477|consen 528 KDPVTREWTLEAGAL-----V---LADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISK--AGIVTSLQARCTVIAAAN 597 (854)
T ss_pred eCCccceeeeccCeE-----E---EccCceEEeehhhhhcccccchHHHHHHhcchhhhh--hhHHHHHHhhhhhheecC
Confidence 1111121111111 0 124589999999999877777777776642211111 111112245678999999
Q ss_pred CCC-------------CCcHHHHhccCCceEeC---CCCHHHHHH--HHHHHhcCC
Q 016044 236 RPS-------------ELDEAILRRLPQAFEIG---MPDRKERAQ--ILKVILKGE 273 (396)
Q Consensus 236 ~~~-------------~l~~~l~~R~~~~i~~~---~P~~~er~~--il~~~l~~~ 273 (396)
+.. ++.+.+++||+..-.+. -|-.+|+.. ++..+.+..
T Consensus 598 PigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~h 653 (854)
T KOG0477|consen 598 PIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHH 653 (854)
T ss_pred CCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcC
Confidence 732 45678999996433332 233444332 445555433
No 248
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.60 E-value=1.9e-06 Score=84.65 Aligned_cols=207 Identities=17% Similarity=0.224 Sum_probs=107.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec-----
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI----- 156 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~----- 156 (396)
..+-+.+++.=+.+-+.++++++. +...+... ...+-+||+||+||||||.++.+++++|..++...-
T Consensus 76 y~P~t~eeLAVHkkKI~eVk~WL~----~~~~~~~~---l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~ 148 (634)
T KOG1970|consen 76 YKPRTLEELAVHKKKISEVKQWLK----QVAEFTPK---LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLK 148 (634)
T ss_pred cCcccHHHHhhhHHhHHHHHHHHH----HHHHhccC---CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccc
Confidence 345566777666655666666654 11222211 123557899999999999999999999988887541
Q ss_pred --ccc------cchhhchHHHHHHHHHHHHHH------------hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHH
Q 016044 157 --SNL------MSKWFGDAQKLVAAVFSLAYK------------LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMAL 216 (396)
Q Consensus 157 --~~l------~~~~~g~~~~~~~~~f~~a~~------------~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 216 (396)
..+ ....+...-.........+.+ .++.+|++||+-..+... ..+... +.+.+
T Consensus 149 ~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~~~f~----evL~~ 221 (634)
T KOG1970|consen 149 EPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DSETFR----EVLRL 221 (634)
T ss_pred ccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hHHHHH----HHHHH
Confidence 111 110111100111111111211 134589999997764432 122222 22222
Q ss_pred hhccCcCCCCcEEE-EEecCCCCCCcHHHH------h--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCC----CCHHH
Q 016044 217 WDGFTTDQNARVMV-LAATNRPSELDEAIL------R--RLPQAFEIGMPDRKERAQILKVILKGEKVEEN----IDFDY 283 (396)
Q Consensus 217 l~~~~~~~~~~v~v-I~atn~~~~l~~~l~------~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~----~~l~~ 283 (396)
+-... ..++++ |.-++.++..++..+ - |+ ..|.|.+-...--+..|+.++........ -+...
T Consensus 222 y~s~g---~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~ 297 (634)
T KOG1970|consen 222 YVSIG---RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAE 297 (634)
T ss_pred HHhcC---CCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHH
Confidence 22222 222333 332333343332221 1 56 67889888888888888888864433211 11223
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHH
Q 016044 284 LAGLCEGFTGSDLLEVCKQAAYFS 307 (396)
Q Consensus 284 la~~~~g~s~~di~~l~~~A~~~a 307 (396)
+-..+.| +++||+.++..-.+.+
T Consensus 298 v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 298 VELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHHh-cCccHHHHHhHhhhhc
Confidence 3333333 4458888777655554
No 249
>PRK06921 hypothetical protein; Provisional
Probab=98.60 E-value=1.9e-07 Score=86.63 Aligned_cols=68 Identities=26% Similarity=0.391 Sum_probs=44.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
..+++|+||||+|||+|+.++|+++ |..++++...++........ ......+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 4789999999999999999999865 56677777655544321111 111111121 22458999999954
No 250
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.7e-07 Score=86.35 Aligned_cols=70 Identities=27% Similarity=0.430 Sum_probs=49.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHHH-HHH-HHHHHHHHhCCcEEEEcccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQK-LVA-AVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~~-~~~-~~f~~a~~~~p~vl~iDEid~l 194 (396)
+.+++|+||||+|||+||-|+++++ |..++.++.++++......... ... .+.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 5789999999999999999998866 7888889988887664332221 111 111112 24479999999775
No 251
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.4e-06 Score=79.31 Aligned_cols=121 Identities=11% Similarity=0.072 Sum_probs=78.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcE--------------EEEecccccc-------hhhchHHHHHHHHHHHHH
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGAVF--------------INVRISNLMS-------KWFGDAQKLVAAVFSLAY 179 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~~~~--------------~~i~~~~l~~-------~~~g~~~~~~~~~f~~a~ 179 (396)
.+++.+||+||+|+||..+|.++|+.+-+.- ..-..+++.- -...+.....+.+...+.
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4578999999999999999999998653210 0001122211 011122222222221121
Q ss_pred H-hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCC
Q 016044 180 K-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 180 ~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P 257 (396)
. .+..|++|+++|.+.. ...+.+++.++ +++.++++|..|+.++.+.+.+++|+ ..+.++.+
T Consensus 85 e~~~~KV~II~~ae~m~~-----------~AaNaLLK~LE----EPp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-----------QSANSLLKLIE----EPPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhCH-----------HHHHHHHHhhc----CCCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 2 2357999999999832 23346666665 46788999999999999999999999 77788776
No 252
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.56 E-value=6.2e-07 Score=86.52 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=57.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCC-cEEEEecccccchhhchHHH------HHHHHHHHHHHhCCcEEEEcccc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGA-VFINVRISNLMSKWFGDAQK------LVAAVFSLAYKLQPAIIFIDEVD 192 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~-~~~~i~~~~l~~~~~g~~~~------~~~~~f~~a~~~~p~vl~iDEid 192 (396)
..+++|++||||+|+|||+|+-.+...+.. .-..++...++........+ .+..+.... .....+|+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l-~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL-AKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH-HhcCCEEEEeeee
Confidence 457899999999999999999999887654 22223333333221111111 111222211 1233599999998
Q ss_pred ccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 193 SFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 193 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
.- +-.+ ..++..++..+- ..++++|+|+|.
T Consensus 138 V~----DiaD----Amil~rLf~~l~------~~gvvlVaTSN~ 167 (362)
T PF03969_consen 138 VT----DIAD----AMILKRLFEALF------KRGVVLVATSNR 167 (362)
T ss_pred cc----chhH----HHHHHHHHHHHH------HCCCEEEecCCC
Confidence 63 1112 223334443332 346899999996
No 253
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.52 E-value=9e-08 Score=95.59 Aligned_cols=140 Identities=31% Similarity=0.411 Sum_probs=86.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc--CCcEEEEecccccchh-----hchHH--------HHHHHHHHHHHHhCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES--GAVFINVRISNLMSKW-----FGDAQ--------KLVAAVFSLAYKLQPAIIF 187 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~--~~~~~~i~~~~l~~~~-----~g~~~--------~~~~~~f~~a~~~~p~vl~ 187 (396)
.-++++.|.|||||..+++++.... ..+|+.++|..+.... +|... +.....+. ....+.+|
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~---~A~gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLE---QADGGTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccce---ecCCCccH
Confidence 4679999999999999999998755 4689999997664332 11111 11111122 22348999
Q ss_pred EccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHH
Q 016044 188 IDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRK 260 (396)
Q Consensus 188 iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~ 260 (396)
+|||..+. -..+..+.+++.+-.-.--|... .+-+|.||+||+++ ..+.+.|..|+ ..+.+..|+..
T Consensus 413 ldeIgd~p----~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr 486 (606)
T COG3284 413 LDEIGDMP----LALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLR 486 (606)
T ss_pred HHHhhhch----HHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchh
Confidence 99998873 22222222222221111111122 35678999999863 35667888888 78888899888
Q ss_pred HHHH---HHHHHhc
Q 016044 261 ERAQ---ILKVILK 271 (396)
Q Consensus 261 er~~---il~~~l~ 271 (396)
+|.+ +|.+++.
T Consensus 487 ~R~d~~~~l~~~~~ 500 (606)
T COG3284 487 ERSDRIPLLDRILK 500 (606)
T ss_pred cccccHHHHHHHHH
Confidence 8775 4444443
No 254
>PF05729 NACHT: NACHT domain
Probab=98.52 E-value=1.2e-06 Score=74.84 Aligned_cols=140 Identities=15% Similarity=0.269 Sum_probs=73.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcC---------CcEEEEecccccchh------------hchHHHHHHH-HHHHHHHhC
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESG---------AVFINVRISNLMSKW------------FGDAQKLVAA-VFSLAYKLQ 182 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~---------~~~~~i~~~~l~~~~------------~g~~~~~~~~-~f~~a~~~~ 182 (396)
-++|+|+||+|||++++.++..+. ...+.+.+....... .......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999987541 112233333222110 0011111111 112223445
Q ss_pred CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccC--CceEeCCCCHH
Q 016044 183 PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLP--QAFEIGMPDRK 260 (396)
Q Consensus 183 p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~--~~i~~~~P~~~ 260 (396)
..+++||.+|.+...............+..+ +... ...++.++.++.+ ..... +.+++. ..+.++..+.+
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l---~~~~---~~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQL---LPQA---LPPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSEE 153 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHH---hhhc---cCCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCHH
Confidence 6799999999986543321111122222222 2221 1233445555442 22222 444332 45889999999
Q ss_pred HHHHHHHHHhcC
Q 016044 261 ERAQILKVILKG 272 (396)
Q Consensus 261 er~~il~~~l~~ 272 (396)
++.++++.+++.
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999988753
No 255
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.51 E-value=7.3e-07 Score=82.63 Aligned_cols=161 Identities=22% Similarity=0.360 Sum_probs=97.2
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHH-H--HHcCCcEEEEecccccch----
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI-A--KESGAVFINVRISNLMSK---- 162 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~al-a--~~~~~~~~~i~~~~l~~~---- 162 (396)
+.|..+-.+.+.+++..... .+..+.+++.||.|+|||++.... + ++.|-+|+.+........
T Consensus 26 l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 56777777777766643211 233578999999999999877554 3 367888888776544322
Q ss_pred -----------------hhchHHHHHHHHHHHHHHh----C-CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc
Q 016044 163 -----------------WFGDAQKLVAAVFSLAYKL----Q-PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF 220 (396)
Q Consensus 163 -----------------~~g~~~~~~~~~f~~a~~~----~-p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 220 (396)
..|.....+..+....... + +-|.++||||.+++..... -+.+..|-.
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQt----------llYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQT----------LLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhH----------HHHHHHHHH
Confidence 1122222222232222211 1 2344578999986543221 222333322
Q ss_pred CcCCCCcEEEEEecCCCCC---CcHHHHhccCCc-eEe-CCCCHHHHHHHHHHHhc
Q 016044 221 TTDQNARVMVLAATNRPSE---LDEAILRRLPQA-FEI-GMPDRKERAQILKVILK 271 (396)
Q Consensus 221 ~~~~~~~v~vI~atn~~~~---l~~~l~~R~~~~-i~~-~~P~~~er~~il~~~l~ 271 (396)
.....++.+||.|.+.+. +...+.+||... |.+ |..+..+...+++..+.
T Consensus 166 -qs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 166 -QSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred -hhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 234668999999988664 457888899877 444 33468888889888873
No 256
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.4e-06 Score=91.33 Aligned_cols=127 Identities=19% Similarity=0.280 Sum_probs=85.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCC--CCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccc--
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLL--GPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMS-- 161 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~--~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~-- 161 (396)
.|+|++++...+.+.+..... ++. .+...++|.||.|+|||-+|+++|..+ .-.++.++++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~--------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA--------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc--------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 488999999999888864211 112 245678999999999999999999976 45789999886322
Q ss_pred -------hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCC-------CCc
Q 016044 162 -------KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQ-------NAR 227 (396)
Q Consensus 162 -------~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~ 227 (396)
.|.|..+ ...+....++...+||+|||||... ..+.+.+++.+|.....+ -.+
T Consensus 635 kligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkAh-----------~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKAH-----------PDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred hccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhcC-----------HHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 2333322 2345555556566999999999852 223445555565432211 246
Q ss_pred EEEEEecCC
Q 016044 228 VMVLAATNR 236 (396)
Q Consensus 228 v~vI~atn~ 236 (396)
++||.|+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 889999874
No 257
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.44 E-value=5e-06 Score=80.86 Aligned_cols=170 Identities=29% Similarity=0.341 Sum_probs=96.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEE-ecc---cccc---
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINV-RIS---NLMS--- 161 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i-~~~---~l~~--- 161 (396)
.|.|.+++|+++.-++.. ........+-.++..-+|||.|.|||.|+.+.+-+-.-.-.-++.- .++ .|..
T Consensus 332 SIfG~~DiKkAiaClLFg--GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFG--GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhc--CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 589999999998664431 1111122221123345799999999999999998866433222210 000 0000
Q ss_pred ------hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecC
Q 016044 162 ------KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATN 235 (396)
Q Consensus 162 ------~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 235 (396)
.++-+... .-...++|++|||+|.+-....-..+++++..... -.-.|+...-+.+.-|++++|
T Consensus 410 RD~~tReFylEGGA--------MVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTIS--IAKAGITT~LNSRtSVLAAAN 479 (729)
T KOG0481|consen 410 RDPSTREFYLEGGA--------MVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTIS--IAKAGITTTLNSRTSVLAAAN 479 (729)
T ss_pred ecCCcceEEEecce--------EEEecCCEEEeehhhccCchhhhHHHHHHHhhhHH--HhhhcceeeecchhhhhhhcC
Confidence 00000000 00124589999999998554444445555443222 223455555577888999999
Q ss_pred CCC-------------CCcHHHHhccCCceEeCCCCHHHH-HHHHHHHh
Q 016044 236 RPS-------------ELDEAILRRLPQAFEIGMPDRKER-AQILKVIL 270 (396)
Q Consensus 236 ~~~-------------~l~~~l~~R~~~~i~~~~P~~~er-~~il~~~l 270 (396)
++. ++-+.+++|||.++-+.--..++| ..|.++.+
T Consensus 480 pvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 480 PVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred CccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 632 233899999998887765443333 34445544
No 258
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=4.6e-06 Score=78.40 Aligned_cols=126 Identities=14% Similarity=0.148 Sum_probs=84.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC-------------cEEEEecccccchhhchHHHHHHHHHHHHH-----HhCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGA-------------VFINVRISNLMSKWFGDAQKLVAAVFSLAY-----KLQPA 184 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~-------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-----~~~p~ 184 (396)
++.+||+|+.|.||+++++.+++.+-+ .+..++.. +...+ -..++.+..... .....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i~--vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDLS--KSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcCC--HHHHHHHHHHhccCCcccCCce
Confidence 567889999999999999999987622 12222210 11111 112333322221 12457
Q ss_pred EEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHH
Q 016044 185 IIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQ 264 (396)
Q Consensus 185 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~ 264 (396)
|++||++|.+.. ...+.+++.++ +++..+++|.+|+.++.+-+++++|+ ..+.|.+|+.++..+
T Consensus 93 vvII~~~e~m~~-----------~a~NaLLK~LE----EPp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 93 ILIIKNIEKTSN-----------SLLNALLKTIE----EPPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILA 156 (299)
T ss_pred EEEEecccccCH-----------HHHHHHHHHhh----CCCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHH
Confidence 999999988721 12335566555 35677888888878899999999999 899999999999887
Q ss_pred HHHHH
Q 016044 265 ILKVI 269 (396)
Q Consensus 265 il~~~ 269 (396)
.+...
T Consensus 157 ~l~~~ 161 (299)
T PRK07132 157 KLLSK 161 (299)
T ss_pred HHHHc
Confidence 77653
No 259
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.43 E-value=1.1e-07 Score=91.20 Aligned_cols=163 Identities=28% Similarity=0.360 Sum_probs=82.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc-----c----
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN-----L---- 159 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~-----l---- 159 (396)
+|.|.+.+|..+--.+...... ....+...+..-++||.|.||+|||.+.+.+++-.... ++.++.. +
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~--~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEK--NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SC--CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhcccc--ccccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCcccee
Confidence 5889999998873211110000 00000112334579999999999999999886543322 2222211 1
Q ss_pred -----cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhc---------cCcCCC
Q 016044 160 -----MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDG---------FTTDQN 225 (396)
Q Consensus 160 -----~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~ 225 (396)
.+.|.-+.. .+- ....+|++|||+|.+.... ...++..|+. +...-+
T Consensus 102 ~~d~~~~~~~leaG-----alv---lad~GiccIDe~dk~~~~~-----------~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 102 SRDPVTGEWVLEAG-----ALV---LADGGICCIDEFDKMKEDD-----------RDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp CCCGGTSSECEEE------HHH---HCTTSEEEECTTTT--CHH-----------HHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred ccccccceeEEeCC-----chh---cccCceeeecccccccchH-----------HHHHHHHHHcCeeccchhhhccccc
Confidence 111211111 111 2255999999999983321 1233344432 112224
Q ss_pred CcEEEEEecCCCC-------------CCcHHHHhccCCceEe-CCCCHHHHHHHHHHHhcCC
Q 016044 226 ARVMVLAATNRPS-------------ELDEAILRRLPQAFEI-GMPDRKERAQILKVILKGE 273 (396)
Q Consensus 226 ~~v~vI~atn~~~-------------~l~~~l~~R~~~~i~~-~~P~~~er~~il~~~l~~~ 273 (396)
.+.-|++++|+.. .+++.+++|||..+.+ ..|+.+.-..+.++.+...
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 5678999999754 4678999999988764 6777777777777777644
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.40 E-value=2.2e-06 Score=72.87 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=46.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh------------------------hchHHHHHHHHHHHH
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW------------------------FGDAQKLVAAVFSLA 178 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~------------------------~g~~~~~~~~~f~~a 178 (396)
++++||||+|||+++..++... +.+++.+++....... ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998865 4566666553322110 011111222234445
Q ss_pred HHhCCcEEEEccccccccC
Q 016044 179 YKLQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 179 ~~~~p~vl~iDEid~l~~~ 197 (396)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5667899999999987543
No 261
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.39 E-value=5e-07 Score=82.20 Aligned_cols=131 Identities=21% Similarity=0.391 Sum_probs=79.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHH------HcCCcEEEEecccccchhh-chHHHHHHHHHH--------HHHHhCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK------ESGAVFINVRISNLMSKWF-GDAQKLVAAVFS--------LAYKLQPAIIF 187 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~------~~~~~~~~i~~~~l~~~~~-g~~~~~~~~~f~--------~a~~~~p~vl~ 187 (396)
..++||.||.|.||+.+|+.+.. ++..+|+.++|..+.+... ...-..+...|. ..+....+++|
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 46799999999999999999865 5678999999987754321 001111222222 12334568999
Q ss_pred EccccccccCCCCCchHHHHhhHHHHHHHhh-------ccCcCCCCcEEEEEecCC-------CCCCcHHHHhccCCceE
Q 016044 188 IDEVDSFLGQRRTSDHEALTNMKTEFMALWD-------GFTTDQNARVMVLAATNR-------PSELDEAILRRLPQAFE 253 (396)
Q Consensus 188 iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~-------~~~~~~~~~v~vI~atn~-------~~~l~~~l~~R~~~~i~ 253 (396)
+|||..+....+. .+++.++ |........+.+|+.|-+ .....+.+.-|+ ....
T Consensus 288 ldeigelgadeqa-----------mllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwt 355 (531)
T COG4650 288 LDEIGELGADEQA-----------MLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWT 355 (531)
T ss_pred hHhhhhcCccHHH-----------HHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heee
Confidence 9999998543322 2222222 111122345566666543 223445666677 6677
Q ss_pred eCCCCHHHHHHH
Q 016044 254 IGMPDRKERAQI 265 (396)
Q Consensus 254 ~~~P~~~er~~i 265 (396)
|..|...+|.+-
T Consensus 356 f~lpgl~qr~ed 367 (531)
T COG4650 356 FTLPGLRQRQED 367 (531)
T ss_pred eeccccccCccc
Confidence 888888777653
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.38 E-value=6.2e-06 Score=91.88 Aligned_cols=176 Identities=17% Similarity=0.236 Sum_probs=97.5
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcE---EEEecc--
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF---INVRIS-- 157 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~---~~i~~~-- 157 (396)
+...+++++|.+...+++..++..- ....+-+-|+|++|+||||+|+++++.....| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v 246 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFI 246 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccc
Confidence 3457899999999999998766320 12246688999999999999999988764332 111110
Q ss_pred ----cccch-----h---hchHHHHHHH-------------HHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHH
Q 016044 158 ----NLMSK-----W---FGDAQKLVAA-------------VFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTE 212 (396)
Q Consensus 158 ----~l~~~-----~---~g~~~~~~~~-------------~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ 212 (396)
..... + ..-....+.. ........++.+|+|||++.. .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~ 309 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------D 309 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------H
Confidence 00000 0 0000011111 111112335578999998753 1
Q ss_pred HHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCC----HHHHHH
Q 016044 213 FMALWDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENID----FDYLAG 286 (396)
Q Consensus 213 ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~----l~~la~ 286 (396)
.+..+.+.......+..||.||... .+.+ ..+..+.++.|+.++-.+++..++.+..... .+ ..++++
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~ 383 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVAL 383 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH
Confidence 1111211111112234556666643 2332 3567789999999999999988875433221 12 234667
Q ss_pred hCCCCcH
Q 016044 287 LCEGFTG 293 (396)
Q Consensus 287 ~~~g~s~ 293 (396)
.+.|..-
T Consensus 384 ~c~GLPL 390 (1153)
T PLN03210 384 RAGNLPL 390 (1153)
T ss_pred HhCCCcH
Confidence 7777553
No 263
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.34 E-value=4e-07 Score=79.30 Aligned_cols=72 Identities=28% Similarity=0.445 Sum_probs=46.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHH-HHHHHHHHHHHHhCCcEEEEcccccc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQ-KLVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~-~~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
....+++|+||||||||++|.++++++ |..+..++.+++......... ......+... ....+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEeccccccee
Confidence 345899999999999999999998854 788888888877655332110 1112222222 24589999999653
No 264
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.32 E-value=6.1e-05 Score=75.64 Aligned_cols=164 Identities=11% Similarity=0.234 Sum_probs=106.8
Q ss_pred CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHH
Q 016044 183 PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKER 262 (396)
Q Consensus 183 p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er 262 (396)
|+++++.|+|.++.. ....+.+..+...... ..+.+|+.+.+ ..+++.|.+-+ .++.+|+|+.+|+
T Consensus 82 ~~~~vl~d~h~~~~~------~~~~r~l~~l~~~~~~-----~~~~~i~~~~~--~~~p~el~~~~-~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLND------ISISRKLRNLSRILKT-----QPKTIIIIASE--LNIPKELKDLI-TVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcc------hHHHHHHHHHHHHHHh-----CCCEEEEEcCC--CCCCHHHHhce-eEEeecCcCHHHH
Confidence 689999999998732 1233444444443332 22344444432 45777776654 7889999999999
Q ss_pred HHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 263 AQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 263 ~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
.++++.+....... ++.+++.+++.+.|+|..+++.++..+.. . ...++.+++...++..+.
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~-------------~~~~~~~~~~~i~~~k~q 210 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA----T-------------YKTIDENSIPLILEEKKQ 210 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----H-------------cCCCChhhHHHHHHHHHH
Confidence 99998887644333 44557899999999999999998876332 1 033566665555543332
Q ss_pred chhhhhhhhccCCCCCccccCCCccHhHHHHHHHHHHH
Q 016044 342 TRVAATEYTLNSQSSGWSRNNESNDYQVQAAISELSRL 379 (396)
Q Consensus 342 ~~~~~~~~~~~~~~~~w~di~~~~~~~~~~~L~ei~~~ 379 (396)
............+.++|+|+||.+ .+|+.|.+....
T Consensus 211 ~~~~~~~le~~~~~~~~~dvgGl~--~lK~~l~~~~~~ 246 (489)
T CHL00195 211 IISQTEILEFYSVNEKISDIGGLD--NLKDWLKKRSTS 246 (489)
T ss_pred HHhhhccccccCCCCCHHHhcCHH--HHHHHHHHHHHH
Confidence 211111223335778999999999 899888876443
No 265
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.31 E-value=2.5e-05 Score=70.15 Aligned_cols=173 Identities=15% Similarity=0.210 Sum_probs=101.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCC---cEEEEeccccc-----chhhc------------hHHHHHHHHHHHHHHh-CC
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGA---VFINVRISNLM-----SKWFG------------DAQKLVAAVFSLAYKL-QP 183 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~---~~~~i~~~~l~-----~~~~g------------~~~~~~~~~f~~a~~~-~p 183 (396)
-+.++|+.|+|||+++|++...++. ..+.++...+. ..++. ..++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4678999999999999988776642 22334332221 11111 1222333333344443 35
Q ss_pred cEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCc--EEEEEecCCCCCCc----HHHHhccCCceEeCCC
Q 016044 184 AIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR--VMVLAATNRPSELD----EAILRRLPQAFEIGMP 257 (396)
Q Consensus 184 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~--v~vI~atn~~~~l~----~~l~~R~~~~i~~~~P 257 (396)
-++++||.+.+..+. .+. +..+.....+.... ++++|-..-...+- ..+..|++.+|.+++.
T Consensus 133 v~l~vdEah~L~~~~----le~--------Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 133 VVLMVDEAHDLNDSA----LEA--------LRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred eEEeehhHhhhChhH----HHH--------HHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 899999999883322 111 12222222222333 55555432211111 2333488777899999
Q ss_pred CHHHHHHHHHHHhcCCCCC----CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 016044 258 DRKERAQILKVILKGEKVE----ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310 (396)
Q Consensus 258 ~~~er~~il~~~l~~~~~~----~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~ 310 (396)
+.++-...+++.+.+.... ++-.+..+...+.| .|..|.++|..|...+...
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSA 256 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHc
Confidence 9999999999998755433 34446778888888 5678889988887777653
No 266
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.29 E-value=1e-05 Score=76.80 Aligned_cols=162 Identities=23% Similarity=0.264 Sum_probs=83.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcE--EEEecccccchhhch---------------HH----HHHHHHHHHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF--INVRISNLMSKWFGD---------------AQ----KLVAAVFSLA 178 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~~~--~~i~~~~l~~~~~g~---------------~~----~~~~~~f~~a 178 (396)
..+|+|++|||..|||||||.-.+...+.... -.++..+++...... +. ..+.-+-...
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 45699999999999999999998875432100 011222221110000 00 0011111111
Q ss_pred HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC-CCCCcHHHHhccCCceEeCCC
Q 016044 179 YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR-PSELDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 179 ~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~-~~~l~~~l~~R~~~~i~~~~P 257 (396)
. ....+|++||+..- +- +-..+++.+...+- ..++++++|+|+ |++|-..=+.|- ..+|
T Consensus 191 a-~ea~lLCFDEfQVT----DV----ADAmiL~rLf~~Lf------~~GvVlvATSNR~P~dLYknGlQR~---~F~P-- 250 (467)
T KOG2383|consen 191 A-EEAILLCFDEFQVT----DV----ADAMILKRLFEHLF------KNGVVLVATSNRAPEDLYKNGLQRE---NFIP-- 250 (467)
T ss_pred h-hhceeeeechhhhh----hH----HHHHHHHHHHHHHH------hCCeEEEEeCCCChHHHhhcchhhh---hhhh--
Confidence 1 12379999999753 11 11122333333222 236899999997 455543222221 1111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCC-C--CcHH-HHHHHHHHHHH
Q 016044 258 DRKERAQILKVILKGEKVEENIDFDYLAGLCE-G--FTGS-DLLEVCKQAAY 305 (396)
Q Consensus 258 ~~~er~~il~~~l~~~~~~~~~~l~~la~~~~-g--~s~~-di~~l~~~A~~ 305 (396)
-..+|+..+.-..+.+.+|....++-.+ + |.+. |...++++-..
T Consensus 251 ----fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk 298 (467)
T KOG2383|consen 251 ----FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK 298 (467)
T ss_pred ----HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH
Confidence 2467788888777778888874433222 1 4444 77777766443
No 267
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.29 E-value=4.3e-06 Score=78.54 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=82.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH--cCCcE---EEEecccccc------h-------------hhchHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKE--SGAVF---INVRISNLMS------K-------------WFGDAQKLVAAVFSL 177 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~--~~~~~---~~i~~~~l~~------~-------------~~g~~~~~~~~~f~~ 177 (396)
..+-|.|+|++|+|||++|+.+++. ....| +.++.+.-.. . .....+.....+..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE- 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH-
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh-
Confidence 3567899999999999999999976 33222 2233321110 0 00112333333333
Q ss_pred HHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCC
Q 016044 178 AYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 178 a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P 257 (396)
.....+++|+||+++... .. ..+...+.. ...+..+|.||.... +....... ...+.++..
T Consensus 97 ~L~~~~~LlVlDdv~~~~---------~~----~~l~~~~~~----~~~~~kilvTTR~~~-v~~~~~~~-~~~~~l~~L 157 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE---------DL----EELREPLPS----FSSGSKILVTTRDRS-VAGSLGGT-DKVIELEPL 157 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH---------HH-----------HC----HHSS-EEEEEESCGG-GGTTHHSC-EEEEECSS-
T ss_pred hhccccceeeeeeecccc---------cc----ccccccccc----ccccccccccccccc-cccccccc-ccccccccc
Confidence 333457999999998652 11 111111111 122345666766433 22212111 367899999
Q ss_pred CHHHHHHHHHHHhcCCCC---C-CCCCHHHHHHhCCCCcHHHHHHH
Q 016044 258 DRKERAQILKVILKGEKV---E-ENIDFDYLAGLCEGFTGSDLLEV 299 (396)
Q Consensus 258 ~~~er~~il~~~l~~~~~---~-~~~~l~~la~~~~g~s~~di~~l 299 (396)
+.++-.+++......... . .......+++.+.|. |-.|..+
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999998764431 1 122256788888874 4445444
No 268
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.28 E-value=7e-06 Score=73.45 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=51.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEecccccchhh-----------------------chHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRISNLMSKWF-----------------------GDAQKLVA 172 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~~~l~~~~~-----------------------g~~~~~~~ 172 (396)
++....-++++||||||||+++..++.. .+...++++...+....+ .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 3666677899999999999999998764 356777777765211100 01111233
Q ss_pred HHHHHHHHhCCcEEEEcccccccc
Q 016044 173 AVFSLAYKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 173 ~~f~~a~~~~p~vl~iDEid~l~~ 196 (396)
.+...+....+++|+||-+..+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 334444445789999999998754
No 269
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.22 E-value=1.8e-06 Score=93.47 Aligned_cols=146 Identities=21% Similarity=0.321 Sum_probs=93.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc------chhh-ch--HH-HHHHHHHHHHHHhCCcEEEEcccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM------SKWF-GD--AQ-KLVAAVFSLAYKLQPAIIFIDEVD 192 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~------~~~~-g~--~~-~~~~~~f~~a~~~~p~vl~iDEid 192 (396)
.+++||.|.||+|||++..++|+..|-.++.++.++-. +.+. ++ .+ .....-|-.|.+ +++-+++||++
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhh
Confidence 47899999999999999999999999999999986532 2111 11 11 122233444443 45899999998
Q ss_pred ccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC------CCcHHHHhccCCceEeCCCCHHHHHHHH
Q 016044 193 SFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS------ELDEAILRRLPQAFEIGMPDRKERAQIL 266 (396)
Q Consensus 193 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~------~l~~~l~~R~~~~i~~~~P~~~er~~il 266 (396)
....+.-.+....+......++-.+|... +...++.|+||.|+.+ .++..+..|| .++.+...+.++...|.
T Consensus 1622 LaSQSVlEGLNacLDhR~eayIPEld~~f-~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~dDi~~Ia 1699 (4600)
T COG5271 1622 LASQSVLEGLNACLDHRREAYIPELDKTF-DVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTTDDITHIA 1699 (4600)
T ss_pred hhHHHHHHHHHHHHhhcccccccccccee-eccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccccchHHHHH
Confidence 65322222222222221122222233222 2356789999998754 5899999999 88888888777777777
Q ss_pred HHHhc
Q 016044 267 KVILK 271 (396)
Q Consensus 267 ~~~l~ 271 (396)
.....
T Consensus 1700 ~~~yp 1704 (4600)
T COG5271 1700 NKMYP 1704 (4600)
T ss_pred HhhCC
Confidence 66554
No 270
>PHA00729 NTP-binding motif containing protein
Probab=98.21 E-value=6e-06 Score=73.87 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=23.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
.+++|+|+||||||++|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999875
No 271
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.18 E-value=6.3e-06 Score=65.53 Aligned_cols=23 Identities=52% Similarity=0.951 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHcC
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~ 148 (396)
|+|+||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999988664
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.18 E-value=4.6e-05 Score=63.69 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
...+.++|+||+||||++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999755
No 273
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.12 E-value=4.1e-06 Score=88.52 Aligned_cols=207 Identities=18% Similarity=0.237 Sum_probs=124.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccc-ChhhhhcCCCCCCCc-eEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLR-RPELFSHGKLLGPQK-GVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~-~~~~~~~~~~~~~~~-~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
+.+.+..++.|.......+..++...-. .+..|.......... .++++||||+|||+.+...|.++|..++..|.++.
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 3445556777776666666555543211 111222221111122 36899999999999999999999999999999877
Q ss_pred cchhhc-----h--HHHHHHHHH---HHH--HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCc
Q 016044 160 MSKWFG-----D--AQKLVAAVF---SLA--YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNAR 227 (396)
Q Consensus 160 ~~~~~g-----~--~~~~~~~~f---~~a--~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 227 (396)
.++... + ....+...+ ... ......||++||+|.+.... .+... .+..... ...
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~d-Rg~v~-------~l~~l~~------ks~ 459 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGED-RGGVS-------KLSSLCK------KSS 459 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchh-hhhHH-------HHHHHHH------hcc
Confidence 655321 1 011111112 000 00112499999999986622 21211 2222222 223
Q ss_pred EEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 016044 228 VMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYF 306 (396)
Q Consensus 228 v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~ 306 (396)
.-+|+++|...........|.+..++|+.|+...+..-+..++...... .+-.++++.+.+ ++||++.+..-.+.
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 4678888877666554555555789999999999999888888765554 233355666544 67888887665444
No 274
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.5e-05 Score=80.34 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=96.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEEecccc--cchhhchHHHHHHHHHHHHHHh-CCcEEEEcc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES----------GAVFINVRISNL--MSKWFGDAQKLVAAVFSLAYKL-QPAIIFIDE 190 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~----------~~~~~~i~~~~l--~~~~~g~~~~~~~~~f~~a~~~-~p~vl~iDE 190 (396)
++-+|.|.||+|||.++.-+++.. +..++.++...+ ..++.|+.+..+..+...+... .+.||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 677999999999999999998843 345566665533 3456788999999999888743 456889999
Q ss_pred ccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC-----CCCcHHHHhccCCceEeCCCCHHHHHHH
Q 016044 191 VDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP-----SELDEAILRRLPQAFEIGMPDRKERAQI 265 (396)
Q Consensus 191 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~-----~~l~~~l~~R~~~~i~~~~P~~~er~~i 265 (396)
++-+.+...... ..... .++..+-. .+.+.+||||... -.-+|++-+|| ..+.++.|+.+.-..+
T Consensus 289 lh~lvg~g~~~~---~~d~~-nlLkp~L~-----rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~i 358 (898)
T KOG1051|consen 289 LHWLVGSGSNYG---AIDAA-NLLKPLLA-----RGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSLI 358 (898)
T ss_pred eeeeecCCCcch---HHHHH-HhhHHHHh-----cCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhhh
Confidence 999987765421 11112 22222211 3348899887632 23478999999 6778999998876666
Q ss_pred HHHHhcC
Q 016044 266 LKVILKG 272 (396)
Q Consensus 266 l~~~l~~ 272 (396)
|......
T Consensus 359 L~~l~~~ 365 (898)
T KOG1051|consen 359 LPGLSER 365 (898)
T ss_pred hhhhhhh
Confidence 6665543
No 275
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.07 E-value=9.1e-06 Score=72.82 Aligned_cols=22 Identities=45% Similarity=0.700 Sum_probs=20.4
Q ss_pred CceEEEECCCCCcHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIA 144 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala 144 (396)
+..+||||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5679999999999999999996
No 276
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.06 E-value=3.8e-06 Score=68.11 Aligned_cols=31 Identities=39% Similarity=0.717 Sum_probs=27.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
|+|.|||||||||+|+.+++.+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 6899999999999999999999988776653
No 277
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.04 E-value=6.1e-05 Score=65.90 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=44.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh-------------------------------hchHH---
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW-------------------------------FGDAQ--- 168 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~-------------------------------~g~~~--- 168 (396)
++++||||||||+++..++.+. |.+++.++..+-.... .+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999886643 5566555542211100 00000
Q ss_pred HHHHHHHHHHHHhCCcEEEEcccccccc
Q 016044 169 KLVAAVFSLAYKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 169 ~~~~~~f~~a~~~~p~vl~iDEid~l~~ 196 (396)
.....+...+...+|.+++||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123344444566889999999998754
No 278
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.03 E-value=4.5e-05 Score=74.00 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=40.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH----cCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKE----SGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFL 195 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~----~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~ 195 (396)
.....++++.||+|||||+++.+++.. .| -.++...+... ... ..... -....+|+|||+..+.
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~----L~~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN----IST---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH----HHH---HHHhh--hccCCEEEEEcCCCCc
Confidence 445678999999999999999998765 23 12222222211 111 11111 2245899999999864
Q ss_pred c
Q 016044 196 G 196 (396)
Q Consensus 196 ~ 196 (396)
-
T Consensus 274 ~ 274 (449)
T TIGR02688 274 F 274 (449)
T ss_pred C
Confidence 3
No 279
>PF14516 AAA_35: AAA-like domain
Probab=98.03 E-value=0.00012 Score=70.27 Aligned_cols=171 Identities=16% Similarity=0.209 Sum_probs=94.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhch-------------------------------H
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGD-------------------------------A 167 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~-------------------------------~ 167 (396)
++..+.+.||..+|||++...+.+.+ |...+.+++..+....... .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 35678999999999999998886644 7788888886653211100 0
Q ss_pred HHHHHHHHHHH---HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC-----CCCcEEEEEecCCCCC
Q 016044 168 QKLVAAVFSLA---YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD-----QNARVMVLAATNRPSE 239 (396)
Q Consensus 168 ~~~~~~~f~~a---~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~v~vI~atn~~~~ 239 (396)
.......|... ...+|-||+|||+|.++.... +...|+..+..+... ...++.+|.+...+..
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~---------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ---------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc---------hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 01111122221 123578999999999865321 112333333332211 1123444444332221
Q ss_pred CcHHH-Hh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 016044 240 LDEAI-LR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAY 305 (396)
Q Consensus 240 l~~~l-~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~ 305 (396)
+.... .+ .+...+.++..+.+|...+++.+-.. ... ..++.+-..+.|. |-=+..+|...+.
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~-~~~~~l~~~tgGh-P~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQ-EQLEQLMDWTGGH-PYLVQKACYLLVE 245 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCH-HHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 21111 11 34456778888999998888776432 221 2278888888884 4455666655544
No 280
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.01 E-value=1.9e-05 Score=74.11 Aligned_cols=104 Identities=19% Similarity=0.332 Sum_probs=57.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcE-EEEecccccchhh-------chHHHHHHHHHHHHHHhCCcEEEEccc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF-INVRISNLMSKWF-------GDAQKLVAAVFSLAYKLQPAIIFIDEV 191 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~~~-~~i~~~~l~~~~~-------g~~~~~~~~~f~~a~~~~p~vl~iDEi 191 (396)
..+++|++|||+-|+|||+|.-.+...+..+- ..++.-.++.... |++ ..+..+-... ..+..||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~-~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADEL-AAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHH-HhcCCEEEeeee
Confidence 34689999999999999999999988764322 2233223322111 211 1111111111 113379999999
Q ss_pred cccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC-CCC
Q 016044 192 DSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR-PSE 239 (396)
Q Consensus 192 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~-~~~ 239 (396)
..- +-.+.. ++..|+..+- ..+|++++|+|. |+.
T Consensus 140 ~Vt----DI~DAM----iL~rL~~~Lf------~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 140 EVT----DIADAM----ILGRLLEALF------ARGVVLVATSNTAPDN 174 (367)
T ss_pred eec----ChHHHH----HHHHHHHHHH------HCCcEEEEeCCCChHH
Confidence 752 222222 3334443332 246899999995 443
No 281
>PHA02624 large T antigen; Provisional
Probab=97.98 E-value=6.1e-05 Score=76.01 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=71.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR 199 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~ 199 (396)
.+..+.++|+||||||||+++.++++.++...+.++++.-.+. ..+..+. ...+.+|||+-.-.....
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~----------FwL~pl~--D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN----------FELGCAI--DQFMVVFEDVKGQPADNK 495 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH----------HHhhhhh--hceEEEeeeccccccccc
Confidence 3445689999999999999999999999777777875542211 1111121 225888999864322110
Q ss_pred --CCchHHHHhhHHHHHHHhhcc-CcC----CCCc-----EEEEEecCCCCCCcHHHHhccCCceEeCC
Q 016044 200 --TSDHEALTNMKTEFMALWDGF-TTD----QNAR-----VMVLAATNRPSELDEAILRRLPQAFEIGM 256 (396)
Q Consensus 200 --~~~~~~~~~~~~~ll~~l~~~-~~~----~~~~-----v~vI~atn~~~~l~~~l~~R~~~~i~~~~ 256 (396)
.... .+. -+..+-..+||. ... .... -.+|.|||. ..++..+.-||..++.|..
T Consensus 496 ~Lp~G~-~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 496 DLPSGQ-GMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cCCccc-ccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0000 000 012445556665 110 0000 125667774 4678888889988888854
No 282
>PRK08118 topology modulation protein; Reviewed
Probab=97.96 E-value=1.6e-05 Score=68.55 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=29.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
.|+++||||+||||+|+.+++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999888774
No 283
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.96 E-value=1.2e-05 Score=79.53 Aligned_cols=173 Identities=23% Similarity=0.306 Sum_probs=97.6
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcE---------EEEecccc
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF---------INVRISNL 159 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~---------~~i~~~~l 159 (396)
.|.|.+.+|+.+--++.. .......+|..++..-+||+.|.|.+.|+.|.|.+.+...... +-+.+.-.
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 589999999998654432 1112223333345556799999999999999999977432111 00111111
Q ss_pred cchhhchHHHHHHH-HHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 160 MSKWFGDAQKLVAA-VFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 160 ~~~~~g~~~~~~~~-~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
..+ ...++.+.. ..-. ...+|++|||||.+..-.....++.++...-.+ .-.|+...-+.++-|++++|+.+
T Consensus 380 tD~--eTGERRLEAGAMVL---ADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTI--aKAGIHasLNARCSVlAAANPvy 452 (818)
T KOG0479|consen 380 TDQ--ETGERRLEAGAMVL---ADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTI--AKAGIHASLNARCSVLAAANPVY 452 (818)
T ss_pred ecc--ccchhhhhcCceEE---ccCceEEehhcccccchhHHHHHHHHhcceEEe--EeccchhhhccceeeeeecCccc
Confidence 111 223333321 1111 245899999999985444333333333211111 11244445578899999999743
Q ss_pred -------------CCcHHHHhccCCceEe-CCCCHHHHHHHHHHHh
Q 016044 239 -------------ELDEAILRRLPQAFEI-GMPDRKERAQILKVIL 270 (396)
Q Consensus 239 -------------~l~~~l~~R~~~~i~~-~~P~~~er~~il~~~l 270 (396)
.|++.|++||+..+-+ .--+...=..|-.+.+
T Consensus 453 G~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 453 GQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred cccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 4788999999876643 4444444444444444
No 284
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.95 E-value=7.2e-05 Score=70.84 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch----------------hhchHHHHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK----------------WFGDAQKLVAAVFSLAY 179 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 179 (396)
.+...+-++++||||||||+||-.++.+. |.+++.++....... .....+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 46666778999999999999998876543 566667665432211 11223344444444445
Q ss_pred HhCCcEEEEccccccccC
Q 016044 180 KLQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~~ 197 (396)
...+.+|+||-+..+.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999998753
No 285
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.94 E-value=7.6e-05 Score=74.47 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=54.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhh------ch--------HHHHHHHHHHHHHHh
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWF------GD--------AQKLVAAVFSLAYKL 181 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~------g~--------~~~~~~~~f~~a~~~ 181 (396)
.+.+..-++|+|+||+|||+++..++... +.++++++..+...... +. .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 36666778999999999999999998754 56777777654332211 00 111234455556667
Q ss_pred CCcEEEEccccccccC
Q 016044 182 QPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 182 ~p~vl~iDEid~l~~~ 197 (396)
+|.+++||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8899999999988654
No 286
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.93 E-value=0.0001 Score=67.75 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=58.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CC--cEEE-----Eeccc
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GA--VFIN-----VRISN 158 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~--~~~~-----i~~~~ 158 (396)
.+.|+.-+++.+-..+...+..+. -+.|--+-|+|++||||..+++.||+.+ |. +++. .+++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 378888888887776654332221 1223445689999999999999999854 21 1111 11111
Q ss_pred --ccchhhchHHHHHHHHHHHHHHhCCcEEEEcccccc
Q 016044 159 --LMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 159 --l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
-...| .++.-..+.+.+..++.+++++||+|.|
T Consensus 156 ~~~ie~Y---k~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 156 ASKIEDY---KEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hHHHHHH---HHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 01111 2233344555666778899999999998
No 287
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.91 E-value=4.2e-05 Score=66.63 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=36.9
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---EEEEecccc
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV---FINVRISNL 159 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~---~~~i~~~~l 159 (396)
++|.++..+++...+. ... ...++.++++|++|+|||++++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-------~~~----~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-------AAQ----SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-------GTS----S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-------HHH----cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6788999998877552 111 2335789999999999999999987765333 777777655
No 288
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.90 E-value=7.5e-05 Score=72.54 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=52.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh------hc--------hHHHHHHHHHHHHHHh
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW------FG--------DAQKLVAAVFSLAYKL 181 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~------~g--------~~~~~~~~~f~~a~~~ 181 (396)
.+.+..-++++|+||+|||+++..++... +.++++++..+-.... ++ ..+..+..+.......
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 36666778999999999999999998754 3466676654322111 00 0112234455556667
Q ss_pred CCcEEEEccccccccC
Q 016044 182 QPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 182 ~p~vl~iDEid~l~~~ 197 (396)
+|.+|+||++..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998644
No 289
>PRK07261 topology modulation protein; Provisional
Probab=97.90 E-value=2.8e-05 Score=67.33 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=29.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS 157 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~ 157 (396)
-|+++|+||+||||+|+.++..++.+++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 379999999999999999999999888876643
No 290
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.90 E-value=0.0001 Score=69.83 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=52.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEecccccch----------------hhchHHHHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRISNLMSK----------------WFGDAQKLVAAVFSLAY 179 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 179 (396)
.++..+-+.++||||||||++|-.++.+ .|...+.++...-... .....+..+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 3556667899999999999999988753 3667777766332111 11123333443434445
Q ss_pred HhCCcEEEEccccccccC
Q 016044 180 KLQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~~ 197 (396)
...+.+|+||-+..+.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999998753
No 291
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.87 E-value=1.6e-05 Score=68.66 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=30.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
++..++|+|+||||||++|+.+|..++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4578999999999999999999999998888543
No 292
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.83 E-value=0.00019 Score=65.01 Aligned_cols=38 Identities=32% Similarity=0.551 Sum_probs=31.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
+....-++++||||+|||++|..++.+. +...+.+++.
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5566778999999999999999998743 6777777776
No 293
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.82 E-value=3.7e-05 Score=67.95 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=55.6
Q ss_pred EEEECCCCCcHHHHHHHH-HHH---cCCcEEEEecccccchhhch----HHH--H-----------HHHHHHHHHHhCCc
Q 016044 126 VLLYGPPGTGKTMLAKAI-AKE---SGAVFINVRISNLMSKWFGD----AQK--L-----------VAAVFSLAYKLQPA 184 (396)
Q Consensus 126 vLL~GppGtGKT~la~al-a~~---~~~~~~~i~~~~l~~~~~g~----~~~--~-----------~~~~f~~a~~~~p~ 184 (396)
.+++|.||+|||+.|-.. ... .|.+++. +...+.-..... .-. . ......-.....++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999887555 332 2555554 443221111100 000 0 00111111111468
Q ss_pred EEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeC
Q 016044 185 IIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIG 255 (396)
Q Consensus 185 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~ 255 (396)
+++|||++.+.+.+....... . .....+.. ....++-++.+|..+..+++.+++.....+.+.
T Consensus 82 liviDEa~~~~~~r~~~~~~~-~----~~~~~l~~---hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKV-P----EIIEFLAQ---HRHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T---------HHHHGGGG---CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCccccccc-h----HHHHHHHH---hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 999999999988876521111 1 22222222 224567889999999999999988666555554
No 294
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.81 E-value=3.1e-05 Score=77.79 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=44.7
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC-CcEEEE
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-AVFINV 154 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~-~~~~~i 154 (396)
.-|+|+.|++++++.+.+.+.. .... +-....-++|.||||+|||+||++|++.+. .+++.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~------Aa~g--l~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRH------AAQG--LEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHH------HHHh--cCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 4688999999999999776632 1111 122345688999999999999999998652 344444
No 295
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.78 E-value=0.00045 Score=62.75 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=46.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh-----------------------------h--c
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW-----------------------------F--G 165 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~-----------------------------~--g 165 (396)
+.+..-+++.||||||||+++..++... |...++++..+-.... . .
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 5556779999999999999986665432 4555555542111000 0 0
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEEccccccc
Q 016044 166 DAQKLVAAVFSLAYKLQPAIIFIDEVDSFL 195 (396)
Q Consensus 166 ~~~~~~~~~f~~a~~~~p~vl~iDEid~l~ 195 (396)
+.+..+..+........|.++++||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 112333444444445578999999998864
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.78 E-value=6.4e-05 Score=62.67 Aligned_cols=32 Identities=47% Similarity=0.868 Sum_probs=25.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
|+++|||||||||+|+.++..++..+ ++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHHH
Confidence 68999999999999999999988444 444333
No 297
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.74 E-value=0.0021 Score=63.68 Aligned_cols=198 Identities=19% Similarity=0.243 Sum_probs=97.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch---------------hhc-----hHHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK---------------WFG-----DAQKLVAAVFSLA 178 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~---------------~~g-----~~~~~~~~~f~~a 178 (396)
+|..++|+|++|+||||++..+|..+ |..+..+++..+... ..+ .....+......+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46789999999999999999998865 455555555433111 000 1112223333333
Q ss_pred HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCC-----ceE
Q 016044 179 YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQ-----AFE 253 (396)
Q Consensus 179 ~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~-----~i~ 253 (396)
.. ..+|+||....+.. .. ..+.++........ +...++++-++...+.++. .++|.. .+-
T Consensus 174 ~~--~DvVIIDTAGr~~~-----d~----~lm~El~~l~~~~~--pdevlLVvda~~gq~av~~--a~~F~~~l~i~gvI 238 (437)
T PRK00771 174 KK--ADVIIVDTAGRHAL-----EE----DLIEEMKEIKEAVK--PDEVLLVIDATIGQQAKNQ--AKAFHEAVGIGGII 238 (437)
T ss_pred hc--CCEEEEECCCcccc-----hH----HHHHHHHHHHHHhc--ccceeEEEeccccHHHHHH--HHHHHhcCCCCEEE
Confidence 33 37999998765411 11 12222222222111 1223344444333222221 122321 223
Q ss_pred eCCCCHHHHHH-HHHHHh----------cCCCCC--CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHH----HHHHHHHh
Q 016044 254 IGMPDRKERAQ-ILKVIL----------KGEKVE--ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSI----RELLDEER 316 (396)
Q Consensus 254 ~~~P~~~er~~-il~~~l----------~~~~~~--~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~----~~~~~~~~ 316 (396)
+...|...+-- ++.... .+..++ ...+.+.++.+.-|+ +|+..|++.|...-- .+..+...
T Consensus 239 lTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgm--gd~~~l~e~~~~~~~~~~~~~~~~~~~ 316 (437)
T PRK00771 239 ITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGM--GDLESLLEKVEEALDEEEEEKDVEKMM 316 (437)
T ss_pred EecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCC--CChHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444433332 222111 122221 234567777766554 588888887654311 11111111
Q ss_pred cCCCCCCCCCCCHHHHHHHHHhcccch
Q 016044 317 KGKPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 317 ~~~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
. ...+.+||..-++.++.--
T Consensus 317 ~-------~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 317 K-------GKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred c-------CCcCHHHHHHHHHHHHhcC
Confidence 1 3588999999888877653
No 298
>PHA02774 E1; Provisional
Probab=97.74 E-value=0.00018 Score=72.35 Aligned_cols=109 Identities=20% Similarity=0.343 Sum_probs=60.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE-EecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFIN-VRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS 201 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~-i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~ 201 (396)
.++++|+||||||||++|.+|++.++...+. ++... .+. +..+. ...+++|||+-.-
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw----------Lqpl~--d~ki~vlDD~t~~------- 491 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW----------LQPLA--DAKIALLDDATHP------- 491 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc----------cchhc--cCCEEEEecCcch-------
Confidence 4689999999999999999999998654443 55321 110 12222 2269999998211
Q ss_pred chHHHHhhHHHHHHHhhccCcC----CC-----CcEEEEEecCCCCCCc---HHHHhccCCceEeCCC
Q 016044 202 DHEALTNMKTEFMALWDGFTTD----QN-----ARVMVLAATNRPSELD---EAILRRLPQAFEIGMP 257 (396)
Q Consensus 202 ~~~~~~~~~~~ll~~l~~~~~~----~~-----~~v~vI~atn~~~~l~---~~l~~R~~~~i~~~~P 257 (396)
-... +-..+...++|-... .. ..-.+|.|||..-.-+ ..|.+|+ ..++|+.|
T Consensus 492 ~w~y---~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~ 555 (613)
T PHA02774 492 CWDY---IDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNP 555 (613)
T ss_pred HHHH---HHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCC
Confidence 0011 111344556654100 00 1124677888432222 4566687 66666543
No 299
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.73 E-value=2.8e-05 Score=63.93 Aligned_cols=33 Identities=36% Similarity=0.757 Sum_probs=29.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
..+||++|-|||||||++..+|...+.+++.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 367999999999999999999999998887764
No 300
>PTZ00202 tuzin; Provisional
Probab=97.71 E-value=0.0057 Score=59.87 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=48.0
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS 157 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~ 157 (396)
+..-.+++|.+....+|.+.+.. . ....+.-+.|.||+|||||++++.+....+.+.+.++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~----------~-d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRR----------L-DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhc----------c-CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 44567899999999999876642 0 122345678999999999999999999888776666654
No 301
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.71 E-value=0.00017 Score=60.79 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~ 145 (396)
.+.-.+++.||+|||||++.|++|.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 3456699999999999999999998
No 302
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.71 E-value=0.00058 Score=74.57 Aligned_cols=155 Identities=22% Similarity=0.256 Sum_probs=82.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch---h----h--------c---------------hHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK---W----F--------G---------------DAQKLVA 172 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~---~----~--------g---------------~~~~~~~ 172 (396)
.+-++++||+|.|||+++...+...+ ++..+++..-.+. + . + .....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35689999999999999999887766 5544443211000 0 0 0 0011122
Q ss_pred HHHHHHHH-hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCc
Q 016044 173 AVFSLAYK-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQA 251 (396)
Q Consensus 173 ~~f~~a~~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~ 251 (396)
.++..... ..|.+|+|||++.+... .....+..++ ... +.++.+|.++.....++-.-++.-+..
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~~-------~~~~~l~~l~---~~~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITNP-------EIHEAMRFFL---RHQ----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCCh-------HHHHHHHHHH---HhC----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 23332222 46789999999987211 1122222332 221 334455445543222221111111223
Q ss_pred eEeC----CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHH
Q 016044 252 FEIG----MPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGS 294 (396)
Q Consensus 252 i~~~----~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~ 294 (396)
+.+. ..+.+|-.+++...+... + +..+...+.+.|+|+..+
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp~~ 221 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWATA 221 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChHHH
Confidence 4444 668899999887765432 2 223467788899987643
No 303
>PRK03839 putative kinase; Provisional
Probab=97.71 E-value=3.3e-05 Score=67.41 Aligned_cols=31 Identities=29% Similarity=0.600 Sum_probs=28.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999887654
No 304
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.70 E-value=8e-05 Score=64.16 Aligned_cols=23 Identities=43% Similarity=0.801 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~ 147 (396)
+++|+|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 305
>PRK00625 shikimate kinase; Provisional
Probab=97.70 E-value=3.7e-05 Score=66.56 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=28.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+|+|+|.||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998776
No 306
>PRK04296 thymidine kinase; Provisional
Probab=97.70 E-value=0.00042 Score=61.08 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKES---GAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~---~~~~~~i~ 155 (396)
-.+++||+|+|||+++..++..+ +..++.++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46899999999999998887754 55555453
No 307
>PRK13947 shikimate kinase; Provisional
Probab=97.70 E-value=3.9e-05 Score=66.27 Aligned_cols=31 Identities=35% Similarity=0.493 Sum_probs=28.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+|+|.|+||||||++++.+|+.+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999997655
No 308
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.69 E-value=0.00056 Score=62.31 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=50.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEecccccchh--------------------------------
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRISNLMSKW-------------------------------- 163 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~~~l~~~~-------------------------------- 163 (396)
.+.....++++|+||+|||+++..++.+ .|.+.++++..+-....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 3667788999999999999999999654 35566665543221110
Q ss_pred -hchHHHHHHHHHHHHHHhCCcEEEEccccccc
Q 016044 164 -FGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFL 195 (396)
Q Consensus 164 -~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~ 195 (396)
....+..+..+.......++.+++||++..+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 01113344444444555588999999998763
No 309
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.67 E-value=8.8e-05 Score=65.82 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=40.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCC----cEEEEecc-cccc---------hhhchHHHHHHHHHHHHHHhCCcEEEEcc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGA----VFINVRIS-NLMS---------KWFGDAQKLVAAVFSLAYKLQPAIIFIDE 190 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~----~~~~i~~~-~l~~---------~~~g~~~~~~~~~f~~a~~~~p~vl~iDE 190 (396)
-+++.||+||||||++++++..... .++.+..+ ++.. ...+.........+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999886642 22222211 1110 01121112234445556666899999999
Q ss_pred c
Q 016044 191 V 191 (396)
Q Consensus 191 i 191 (396)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 310
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.00016 Score=64.03 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=45.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc--------CCcEEEEec-ccccchhhc-------------hHHHHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES--------GAVFINVRI-SNLMSKWFG-------------DAQKLVAAVFSLAYK 180 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~--------~~~~~~i~~-~~l~~~~~g-------------~~~~~~~~~f~~a~~ 180 (396)
..+.|+.|||||||||+.|-+|+-+ +..+..++- +++.+-..| ...-....+....+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 4678999999999999999999844 223333432 222111111 112223345556678
Q ss_pred hCCcEEEEcccccc
Q 016044 181 LQPAIIFIDEVDSF 194 (396)
Q Consensus 181 ~~p~vl~iDEid~l 194 (396)
+.|.|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 89999999999764
No 311
>PRK06762 hypothetical protein; Provisional
Probab=97.66 E-value=0.00013 Score=62.64 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=29.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
.-++|+|+|||||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 5588999999999999999999986556666654443
No 312
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00067 Score=60.96 Aligned_cols=145 Identities=10% Similarity=0.039 Sum_probs=95.3
Q ss_pred CceEEEECCCC-CcHHHHHHHHHHHcCC---------cEEEEeccccc---chhhchHHHHHHHHHHHH----HHhCCcE
Q 016044 123 QKGVLLYGPPG-TGKTMLAKAIAKESGA---------VFINVRISNLM---SKWFGDAQKLVAAVFSLA----YKLQPAI 185 (396)
Q Consensus 123 ~~~vLL~GppG-tGKT~la~ala~~~~~---------~~~~i~~~~l~---~~~~g~~~~~~~~~f~~a----~~~~p~v 185 (396)
.+..||.|..+ +||..++..++..+.+ .+..+....-. ++.. .-..++.+...+ ......|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEE
Confidence 46799999998 9999999888775532 23333321100 0111 112233333322 2334579
Q ss_pred EEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHH
Q 016044 186 IFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQI 265 (396)
Q Consensus 186 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~i 265 (396)
++|+++|.+.. ...+.+++.++ +++.++++|..|..++.+.+.+++|| ..+.++.|+...-.+.
T Consensus 93 iII~~ae~mt~-----------~AANALLKtLE----EPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 93 AIIYSAELMNL-----------NAANSCLKILE----DAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEEechHHhCH-----------HHHHHHHHhhc----CCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHH
Confidence 99999999832 23346666665 45778888888889999999999999 8999999999888888
Q ss_pred HHHHhcCCCCCCCCCHHHHHHh
Q 016044 266 LKVILKGEKVEENIDFDYLAGL 287 (396)
Q Consensus 266 l~~~l~~~~~~~~~~l~~la~~ 287 (396)
+...+....- +..++.+.+.
T Consensus 157 ~~~~~~p~~~--~~~l~~i~~~ 176 (263)
T PRK06581 157 YSQFIQPIAD--NKTLDFINRF 176 (263)
T ss_pred HHHhcccccc--cHHHHHHHHH
Confidence 8877764332 2335555554
No 313
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.65 E-value=4.9e-05 Score=64.24 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=28.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+|+|+|+||+|||++++.++..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4799999999999999999999999887655
No 314
>PRK13949 shikimate kinase; Provisional
Probab=97.64 E-value=4.8e-05 Score=65.70 Aligned_cols=32 Identities=44% Similarity=0.679 Sum_probs=29.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+.|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35899999999999999999999999888766
No 315
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.64 E-value=0.00062 Score=67.01 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=69.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchH
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHE 204 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~ 204 (396)
-++++||.+|||||+++.+.......++.++..++......- ...... +..+.......+|||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~~-~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLRA-YIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHHH-HHHhhccCCceEEEecccCchh--------
Confidence 789999999999999988888775545555555543332211 111111 1112111347999999998621
Q ss_pred HHHhhHHHHHHHhhccCcCCCCcEEEEEecCC--CCCCcHHHHhccCCceEeCCCCHHHHHH
Q 016044 205 ALTNMKTEFMALWDGFTTDQNARVMVLAATNR--PSELDEAILRRLPQAFEIGMPDRKERAQ 264 (396)
Q Consensus 205 ~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~--~~~l~~~l~~R~~~~i~~~~P~~~er~~ 264 (396)
+-..+-...|.. +.++++.+++.. .....+.+..|. ..+.+.|.+..|...
T Consensus 109 ----W~~~lk~l~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 ----WERALKYLYDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ----HHHHHHHHHccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 111222333322 113444444332 223455666686 788888889888865
No 316
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.64 E-value=0.00087 Score=61.23 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=28.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEec
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRI 156 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~ 156 (396)
++.+...+|++||||||||+++..++.+ .|.+.+++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 4677788999999999999999876553 3555555543
No 317
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.64 E-value=0.00021 Score=66.32 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=62.9
Q ss_pred ccccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcE
Q 016044 75 CDVINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---AVF 151 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---~~~ 151 (396)
-.++.+.....++++++-.+...+.+.+++.. +...+++.||+|+||||+++++..... ..+
T Consensus 47 iR~~~~~~~~~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~i 111 (264)
T cd01129 47 LRILDKKNQILDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNI 111 (264)
T ss_pred EEEeCCccCCCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeE
Confidence 33444443345788887777777777655431 124589999999999999999977653 234
Q ss_pred EEEec-ccccch-----hhc-hHHHHHHHHHHHHHHhCCcEEEEccccc
Q 016044 152 INVRI-SNLMSK-----WFG-DAQKLVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 152 ~~i~~-~~l~~~-----~~g-~~~~~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
+.+.- .++.-. .+. +...........+.+..|.+++++|+..
T Consensus 112 itiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 112 ITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred EEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 44421 111110 001 1112344555666678999999999954
No 318
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.64 E-value=0.00083 Score=63.78 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=47.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
..+.+.+.+++.+..++.. .. -.-|..+.|+|..|||||.+.+.+.+.++.+.+.++|-+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred cCccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 3466778888888765531 11 1346778999999999999999999999999999888544
No 319
>PRK14532 adenylate kinase; Provisional
Probab=97.64 E-value=5.1e-05 Score=66.66 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=28.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK 162 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~ 162 (396)
.++|.|||||||||+|+.+|+.+|..+++ ..++..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is--~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS--TGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe--CcHHHHH
Confidence 48999999999999999999999876654 4444433
No 320
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.64 E-value=0.0039 Score=60.70 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=25.5
Q ss_pred CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC
Q 016044 239 ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE 273 (396)
Q Consensus 239 ~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~ 273 (396)
.|..++-.|.-+.|.+.-.+.+.-+.++...+...
T Consensus 198 ~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 198 PLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 45666666544888898888888888888877543
No 321
>PRK13948 shikimate kinase; Provisional
Probab=97.62 E-value=7.1e-05 Score=65.34 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=31.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
.++..|+|.|.+|||||++++.+|..++.+|+..|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998655
No 322
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.62 E-value=0.00061 Score=61.71 Aligned_cols=76 Identities=25% Similarity=0.380 Sum_probs=50.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---c-CCcEEEEecccccch-----------------------------h--
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---S-GAVFINVRISNLMSK-----------------------------W-- 163 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---~-~~~~~~i~~~~l~~~-----------------------------~-- 163 (396)
+++++..+|+.||||+|||+++..++.. . |.+.+.+...+-... .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 3667788999999999999999887642 2 667666664221100 0
Q ss_pred --hchHHHHHHHHHHHHHHhCCcEEEEcccccc
Q 016044 164 --FGDAQKLVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 164 --~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
..........+.......++.+++||.+..+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123445555666666678899999999998
No 323
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00033 Score=60.99 Aligned_cols=22 Identities=55% Similarity=0.854 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~ 147 (396)
++|+|+||+|||++|+.+|+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999976
No 324
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.61 E-value=0.00055 Score=59.09 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
.+++.|+||+|||++|..++..++.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4899999999999999999999887776665443
No 325
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.60 E-value=5.9e-05 Score=65.91 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=27.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
|+++|||||||||+|+.+|..+|..+ ++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 68999999999999999999998654 44444443
No 326
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.60 E-value=0.00016 Score=58.38 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=37.6
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.|.|++-+++.+...+...+..+ .-..|--+-|+|+||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 47899988888888776543322 01123334589999999999999999964
No 327
>PRK10536 hypothetical protein; Provisional
Probab=97.60 E-value=0.00054 Score=62.52 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..+++.||+|||||++|.+++.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999884
No 328
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.60 E-value=0.00061 Score=61.31 Aligned_cols=38 Identities=34% Similarity=0.538 Sum_probs=29.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
+.+..-++++|+||+|||+++..+|.+. |.+.+.++..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 5556678999999999999999998754 5566666553
No 329
>PRK09354 recA recombinase A; Provisional
Probab=97.60 E-value=0.00066 Score=64.95 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=51.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEecccccch----------------hhchHHHHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRISNLMSK----------------WFGDAQKLVAAVFSLAY 179 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 179 (396)
++...+-+.++||||||||+||-.++.. .|...++++...-... .....+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 3556667899999999999999887653 3666777765432111 11123333333333445
Q ss_pred HhCCcEEEEcccccccc
Q 016044 180 KLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~ 196 (396)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 55789999999998875
No 330
>PRK05973 replicative DNA helicase; Provisional
Probab=97.59 E-value=0.00097 Score=60.53 Aligned_cols=38 Identities=37% Similarity=0.475 Sum_probs=28.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
++.+..-+++.|+||+|||+++-.++... |.+.++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 35666779999999999999998876633 656555554
No 331
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.57 E-value=0.00052 Score=62.44 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEeccc
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISN 158 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~ 158 (396)
++....-+.|+||||||||+++..++... +...++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 35566778999999999999999997542 24666676544
No 332
>PRK14531 adenylate kinase; Provisional
Probab=97.57 E-value=7.7e-05 Score=65.33 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=27.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
..++++||||+||||+++.+|..+|.++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4589999999999999999999999776553
No 333
>PRK06217 hypothetical protein; Validated
Probab=97.56 E-value=7.5e-05 Score=65.38 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=28.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
.|+|.|+||+||||+++++++.+|.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998877655
No 334
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.54 E-value=7.2e-05 Score=63.88 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=29.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
.+++|.|++|+||||+.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998776
No 335
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.53 E-value=7.8e-05 Score=64.77 Aligned_cols=35 Identities=17% Similarity=0.400 Sum_probs=29.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
+-++|.|+||+||||+|+.++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 56899999999999999999999887777665443
No 336
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.52 E-value=0.00038 Score=56.86 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
++++++||+|+|||+++-.++...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888876654
No 337
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.52 E-value=7.2e-05 Score=81.68 Aligned_cols=136 Identities=21% Similarity=0.285 Sum_probs=90.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc------cchhhchHHH---HHHHHHHHHHHhCCcEEEEccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL------MSKWFGDAQK---LVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l------~~~~~g~~~~---~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
.-++|+.||+.+|||++...+|.+.|..|+.++-.+- .+.|+..... --..++-.|.+ .+.-|++||++.
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR-~GyWIVLDELNL 966 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALR-RGYWIVLDELNL 966 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHh-cCcEEEeecccc
Confidence 3569999999999999999999999999999885322 2222211111 11122333433 336899999976
Q ss_pred cccCCCCCchHHHHhhHHHHHHHhhcc----------CcCCCCcEEEEEecCCCC------CCcHHHHhccCCceEeCCC
Q 016044 194 FLGQRRTSDHEALTNMKTEFMALWDGF----------TTDQNARVMVLAATNRPS------ELDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~~v~vI~atn~~~------~l~~~l~~R~~~~i~~~~P 257 (396)
.. +...+ .+-.++|.- ...+..+++++||.|+|. .+..|++.|| ..++|.--
T Consensus 967 Ap----TDVLE-------aLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddi 1034 (4600)
T COG5271 967 AP----TDVLE-------ALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDI 1034 (4600)
T ss_pred Cc----HHHHH-------HHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccC
Confidence 42 11122 222222211 112456789999999886 4678999999 88889888
Q ss_pred CHHHHHHHHHHHhc
Q 016044 258 DRKERAQILKVILK 271 (396)
Q Consensus 258 ~~~er~~il~~~l~ 271 (396)
+.+|...||+..+.
T Consensus 1035 pedEle~ILh~rc~ 1048 (4600)
T COG5271 1035 PEDELEEILHGRCE 1048 (4600)
T ss_pred cHHHHHHHHhccCc
Confidence 89999999987664
No 338
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.52 E-value=0.00024 Score=68.86 Aligned_cols=70 Identities=24% Similarity=0.333 Sum_probs=44.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC-----CcEEEEecc-ccc-----------chhhchHHHHHHHHHHHHHHhCCcEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG-----AVFINVRIS-NLM-----------SKWFGDAQKLVAAVFSLAYKLQPAII 186 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~-----~~~~~i~~~-~l~-----------~~~~g~~~~~~~~~f~~a~~~~p~vl 186 (396)
..++++||+||||||+++++..... ...+.+.-+ ++. ....|............+.+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4589999999999999999987652 344444321 111 01111111123445556667799999
Q ss_pred EEccccc
Q 016044 187 FIDEVDS 193 (396)
Q Consensus 187 ~iDEid~ 193 (396)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999853
No 339
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.51 E-value=0.0011 Score=57.15 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=44.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhh-----------------chHHHHHHHHHHHHHHhCCcEEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWF-----------------GDAQKLVAAVFSLAYKLQPAIIFI 188 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~-----------------g~~~~~~~~~f~~a~~~~p~vl~i 188 (396)
+|+.|++|+|||++|..++...+.+.+++....-...-. .+....+...+... ..+.+++|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 689999999999999999988777777765443221110 11111222222111 14679999
Q ss_pred ccccccccCC
Q 016044 189 DEVDSFLGQR 198 (396)
Q Consensus 189 DEid~l~~~~ 198 (396)
|-+..+..+.
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9998876554
No 340
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.51 E-value=0.0003 Score=67.88 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
..-.+|+||||+|||+|++.+++...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Confidence 34589999999999999999998653
No 341
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.51 E-value=9.5e-05 Score=62.35 Aligned_cols=28 Identities=39% Similarity=0.756 Sum_probs=24.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
++|+|+||+||||+|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 342
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.51 E-value=9.2e-05 Score=61.94 Aligned_cols=29 Identities=31% Similarity=0.642 Sum_probs=26.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
|-+.|||||||||+++.+|..+|.++++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsa 31 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSA 31 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeec
Confidence 56889999999999999999999998763
No 343
>PRK14530 adenylate kinase; Provisional
Probab=97.51 E-value=0.00011 Score=66.15 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=27.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
..|+|.||||+||||+++.+|..+|.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3589999999999999999999999877654
No 344
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.50 E-value=0.0002 Score=68.15 Aligned_cols=42 Identities=24% Similarity=0.512 Sum_probs=35.2
Q ss_pred hhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 114 FSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 114 ~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+.+.+...+...|+|.|+||||||++++.++..+|.+|+.++
T Consensus 124 ~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 124 LGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred HhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 344445667788999999999999999999999999998543
No 345
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.49 E-value=0.00012 Score=66.27 Aligned_cols=33 Identities=30% Similarity=0.595 Sum_probs=28.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+..++|.||||+||||+|+.+|+.+|.++++++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 345999999999999999999999997776654
No 346
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.49 E-value=0.0001 Score=61.65 Aligned_cols=30 Identities=33% Similarity=0.685 Sum_probs=27.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+.+.|+||||||++|+.++..+|.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988776
No 347
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.49 E-value=0.0001 Score=64.90 Aligned_cols=29 Identities=45% Similarity=0.765 Sum_probs=25.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
|+|+||||+||||+|+.+|..+|..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999988766554
No 348
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.49 E-value=0.001 Score=60.16 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=29.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---C------CcEEEEeccc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---G------AVFINVRISN 158 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---~------~~~~~i~~~~ 158 (396)
+.+..-+.|+||||+|||+++..++... + ..+++++...
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 5566678999999999999999997643 2 4556666543
No 349
>PRK14974 cell division protein FtsY; Provisional
Probab=97.48 E-value=0.0016 Score=62.28 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
+.-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 5678999999999999988888754 4455455543
No 350
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.48 E-value=0.00051 Score=66.48 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
....++|.||+|+||||++..+|..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999875
No 351
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0016 Score=63.55 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..++|+||+|+||||++..+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998754
No 352
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.46 E-value=0.00023 Score=68.77 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=43.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC----CcEEEEec-cccc---------chhhchHHHHHHHHHHHHHHhCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG----AVFINVRI-SNLM---------SKWFGDAQKLVAAVFSLAYKLQPAIIFI 188 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~----~~~~~i~~-~~l~---------~~~~g~~~~~~~~~f~~a~~~~p~vl~i 188 (396)
...+++.||+|+||||+++++..... ..++.+.- .++. ....|.........+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 35689999999999999999988654 23333321 1111 1111211122344455566779999999
Q ss_pred cccc
Q 016044 189 DEVD 192 (396)
Q Consensus 189 DEid 192 (396)
||+.
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9984
No 353
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.46 E-value=0.00049 Score=63.12 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGA 149 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~ 149 (396)
....++|.||+|||||++++.+++....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3567999999999999999999987643
No 354
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.46 E-value=0.00081 Score=67.23 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=51.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhh------ch--------HHHHHHHHHHHHHHh
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWF------GD--------AQKLVAAVFSLAYKL 181 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~------g~--------~~~~~~~~f~~a~~~ 181 (396)
.+.+..-+++.|+||+|||+++..++... +.++++++..+-..... +- .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 46667778999999999999999987744 34666766543322110 00 011233444555666
Q ss_pred CCcEEEEccccccccC
Q 016044 182 QPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 182 ~p~vl~iDEid~l~~~ 197 (396)
+|.+++||.+..+...
T Consensus 170 ~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 170 NPQACVIDSIQTLYSP 185 (454)
T ss_pred CCcEEEEecchhhccc
Confidence 8899999999987543
No 355
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.45 E-value=0.00011 Score=62.91 Aligned_cols=28 Identities=43% Similarity=0.722 Sum_probs=24.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
+++.||+||||||+++.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999866653
No 356
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.45 E-value=0.0001 Score=65.20 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=58.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD 202 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~ 202 (396)
...++|.|+.|+|||++.+.|+.+ ++.-+...... ......+ . ..-++.+||++.+..+.
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~------kd~~~~l---~---~~~iveldEl~~~~k~~---- 111 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDD------KDFLEQL---Q---GKWIVELDELDGLSKKD---- 111 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHH----hccCccccCCC------cHHHHHH---H---HhHheeHHHHhhcchhh----
Confidence 355789999999999999999765 21111111110 1111111 1 11588899999874221
Q ss_pred hHHHHhhHHHHHHHhhc-------cCcCCCCcEEEEEecCCCCCC-cHHHHhccCCceEeCC
Q 016044 203 HEALTNMKTEFMALWDG-------FTTDQNARVMVLAATNRPSEL-DEAILRRLPQAFEIGM 256 (396)
Q Consensus 203 ~~~~~~~~~~ll~~l~~-------~~~~~~~~v~vI~atn~~~~l-~~~l~~R~~~~i~~~~ 256 (396)
.+. +++-+-...+. .....+...++|||||..+-| |+.=-||| ..+.+..
T Consensus 112 ~~~---lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 112 VEA---LKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred HHH---HHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 111 11111111111 111224567889999987755 34445688 6666654
No 357
>PRK06547 hypothetical protein; Provisional
Probab=97.45 E-value=0.00014 Score=62.87 Aligned_cols=33 Identities=36% Similarity=0.547 Sum_probs=28.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+.-|++.|++|||||++++.+++.++.+++..+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 567888999999999999999999887776554
No 358
>PRK13695 putative NTPase; Provisional
Probab=97.45 E-value=0.0023 Score=55.35 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~ 147 (396)
.++|.|++|+||||+++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987754
No 359
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.45 E-value=0.001 Score=61.74 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=35.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccc---hh-hchHHHHHHHH----HHHHHHhCCcEEEEcccccc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMS---KW-FGDAQKLVAAV----FSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~---~~-~g~~~~~~~~~----f~~a~~~~p~vl~iDEid~l 194 (396)
|+|+|-||+|||++|+.|+..+ +..+..++...+.- .| ....++..+.. +..+.. ...++++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 7899999999999999998854 55666666433320 11 12234444433 333322 3479999998876
No 360
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.44 E-value=0.0061 Score=51.53 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=75.1
Q ss_pred ECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHh
Q 016044 129 YGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTN 208 (396)
Q Consensus 129 ~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~ 208 (396)
.+.+||||||++.++++-+|- +-.+.-.++.++ ...+.+..+.+...+....++|.|==+.....
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~re----------- 69 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRE----------- 69 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHH-----------
Confidence 588999999999999998873 334555666554 34455555555554445578888864443221
Q ss_pred hHHHHHHHhhccCc---CCCCcEEEEEecCCCCCCcHH--------HHhccCC--ceEeCCCCHHHHHHHHHHHhcCCC
Q 016044 209 MKTEFMALWDGFTT---DQNARVMVLAATNRPSELDEA--------ILRRLPQ--AFEIGMPDRKERAQILKVILKGEK 274 (396)
Q Consensus 209 ~~~~ll~~l~~~~~---~~~~~v~vI~atn~~~~l~~~--------l~~R~~~--~i~~~~P~~~er~~il~~~l~~~~ 274 (396)
..++...+..... ....++.+||-.=..+.-.+. +..|=+. .|.....+...-..|+..+++...
T Consensus 70 -R~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 70 -RKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred -HHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 2233333332221 123466777665433332222 2334433 444555567788888888886543
No 361
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.43 E-value=0.0027 Score=58.00 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=28.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEec
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRI 156 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~ 156 (396)
+.+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 5556678999999999999998886643 667766664
No 362
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.42 E-value=0.0013 Score=58.43 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
+-++|.||+|+||||+++.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999985
No 363
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.42 E-value=0.0017 Score=57.47 Aligned_cols=34 Identities=41% Similarity=0.582 Sum_probs=24.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
+..++.||||||||++++.+...+ +..++.+.++
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 567889999999999999987643 5566666543
No 364
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.42 E-value=0.0022 Score=59.37 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=28.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEec
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRI 156 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~ 156 (396)
++.+..-++++||||||||++|-.++.. .|.+.++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4666777999999999999999988663 2445555543
No 365
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.42 E-value=0.0054 Score=58.58 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=24.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGA 149 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~~ 149 (396)
.++..+.|+|+=|||||++.+.+-+.+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45678999999999999999999876643
No 366
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.41 E-value=0.00017 Score=62.50 Aligned_cols=34 Identities=24% Similarity=0.564 Sum_probs=30.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
...|+|.|++|+|||++++.++..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999998877663
No 367
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.41 E-value=0.00065 Score=68.47 Aligned_cols=101 Identities=19% Similarity=0.303 Sum_probs=61.9
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCce-EEEECCCCCcHHHHHHHHHHHcC---CcEE
Q 016044 77 VINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKG-VLLYGPPGTGKTMLAKAIAKESG---AVFI 152 (396)
Q Consensus 77 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~-vLL~GppGtGKT~la~ala~~~~---~~~~ 152 (396)
+++.+....++++++-.++..+.+.+.+.. +.| ++++||+|+||||+..++.++++ .+++
T Consensus 211 ll~~~~~~~~l~~Lg~~~~~~~~l~~~~~~----------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~ii 274 (486)
T TIGR02533 211 LLDKTAVRLDLETLGMSPELLSRFERLIRR----------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNIL 274 (486)
T ss_pred eccCccCCCCHHHcCCCHHHHHHHHHHHhc----------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEE
Confidence 334444456888888777777777665431 344 68999999999999998877653 3344
Q ss_pred EEec-ccccch-----hhc-hHHHHHHHHHHHHHHhCCcEEEEccccc
Q 016044 153 NVRI-SNLMSK-----WFG-DAQKLVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 153 ~i~~-~~l~~~-----~~g-~~~~~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
.+.- .++.-. .+. ............+.+..|.+|++.|+-.
T Consensus 275 TiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 275 TVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred EEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4432 111100 011 0111233445556678999999999854
No 368
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.40 E-value=0.00066 Score=57.31 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=27.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNL 159 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l 159 (396)
+++.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999987 666666665433
No 369
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.39 E-value=0.00018 Score=62.07 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=28.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
..++|.|++|||||++++.+|..+|.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999987654
No 370
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.39 E-value=0.0005 Score=67.90 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=67.5
Q ss_pred cchhhhccccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCce-EEEECCCCCcHHHHHHHHHHHc
Q 016044 69 YEDVIACDVINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKG-VLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~-vLL~GppGtGKT~la~ala~~~ 147 (396)
|-+.+.-.+++......++++++......+.+.+.+.. |.| +|+.||.|+||||...++.+++
T Consensus 219 ~GEkvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~----------------p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 219 YGEKVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNR----------------PQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred CCcEEEEEEeccccccCCHHHhCCCHHHHHHHHHHHhC----------------CCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 34444445556666678899999998888888776542 455 5778999999999999998887
Q ss_pred CCcE---EEEec------ccccchhhch-HHHHHHHHHHHHHHhCCcEEEEccccc
Q 016044 148 GAVF---INVRI------SNLMSKWFGD-AQKLVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 148 ~~~~---~~i~~------~~l~~~~~g~-~~~~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
+.+. +.+.- +.+..-.+.. ..-.....++...+..|.||++.||-.
T Consensus 283 n~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 283 NTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred cCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 6433 33221 1111100000 000112233344567999999999954
No 371
>PRK13946 shikimate kinase; Provisional
Probab=97.39 E-value=0.00015 Score=63.46 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=30.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
++.|+|.|.+|||||++++.+|+.+|.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999988766
No 372
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.39 E-value=0.00064 Score=65.96 Aligned_cols=23 Identities=52% Similarity=0.680 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~ 147 (396)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 373
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.39 E-value=0.017 Score=54.91 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=54.1
Q ss_pred CcEEEEccccccccCCCC------CchHHHHhhHHHHHHHhhccCcCCCCcEEE-EEecCC---CC--CCcHHHHhccC-
Q 016044 183 PAIIFIDEVDSFLGQRRT------SDHEALTNMKTEFMALWDGFTTDQNARVMV-LAATNR---PS--ELDEAILRRLP- 249 (396)
Q Consensus 183 p~vl~iDEid~l~~~~~~------~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v-I~atn~---~~--~l~~~l~~R~~- 249 (396)
|.++-+|+++.++....- .....-..+...|+..+.+-....++.+++ +++|.. +. .++.++..+-.
T Consensus 157 PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~~ 236 (309)
T PF10236_consen 157 PVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEGF 236 (309)
T ss_pred ceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccCC
Confidence 556679999999766321 111122234445555544444334444432 444432 22 45555554321
Q ss_pred --------------------CceEeCCCCHHHHHHHHHHHhcCCCCC
Q 016044 250 --------------------QAFEIGMPDRKERAQILKVILKGEKVE 276 (396)
Q Consensus 250 --------------------~~i~~~~P~~~er~~il~~~l~~~~~~ 276 (396)
..+.++..+.+|-..++..+....-+.
T Consensus 237 ~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 237 PHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred CCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 268899999999999999998765554
No 374
>PRK14528 adenylate kinase; Provisional
Probab=97.39 E-value=0.00017 Score=63.29 Aligned_cols=31 Identities=32% Similarity=0.587 Sum_probs=27.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+.+++.||||+||||+++.++..+|.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999877654
No 375
>PLN02200 adenylate kinase family protein
Probab=97.39 E-value=0.0002 Score=65.25 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=30.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
+.-+++.|||||||||+|+.++..+|.. .++++++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 4568899999999999999999999865 455555544
No 376
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.39 E-value=0.00023 Score=66.36 Aligned_cols=100 Identities=20% Similarity=0.324 Sum_probs=58.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEec-c
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---AVFINVRI-S 157 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~~-~ 157 (396)
....++++++-.....+.+.+++... .....++++.||+||||||+++++..... ..++.+.- .
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~------------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSA------------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHC------------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred cccccHhhccCchhhHHHHHHHHhhc------------cccceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 34568888877666666666555421 11247899999999999999999998663 33333331 1
Q ss_pred cccch------h-hchHHHHHHHHHHHHHHhCCcEEEEccccc
Q 016044 158 NLMSK------W-FGDAQKLVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 158 ~l~~~------~-~g~~~~~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
++.-. . ..........++..+.+..|.++++.|+-.
T Consensus 166 E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 166 ELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 11100 0 011122344455566677899999999864
No 377
>PRK08233 hypothetical protein; Provisional
Probab=97.39 E-value=0.0016 Score=56.59 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=25.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC-CcEEEEec
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG-AVFINVRI 156 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~-~~~~~i~~ 156 (396)
.-|.+.|+||+||||+|+.++..++ ..++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3477889999999999999999885 44444443
No 378
>PRK13764 ATPase; Provisional
Probab=97.38 E-value=0.00048 Score=70.53 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=41.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEe------cccccchh---hchHHHHHHHHHHHHHHhCCcEEEEcc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG---AVFINVR------ISNLMSKW---FGDAQKLVAAVFSLAYKLQPAIIFIDE 190 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~------~~~l~~~~---~g~~~~~~~~~f~~a~~~~p~vl~iDE 190 (396)
..++|++|||||||||++++++..+. ..+..+. .......+ .+.... ....+....|.++++||
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~----~~~~lLR~rPD~IivGE 332 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEE----TADILLLVRPDYTIYDE 332 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHH----HHHHHHhhCCCEEEECC
Confidence 47899999999999999999998764 2232332 11111111 111122 22223456899999999
Q ss_pred ccc
Q 016044 191 VDS 193 (396)
Q Consensus 191 id~ 193 (396)
+-.
T Consensus 333 iRd 335 (602)
T PRK13764 333 MRK 335 (602)
T ss_pred CCC
Confidence 854
No 379
>PRK04328 hypothetical protein; Provisional
Probab=97.38 E-value=0.0029 Score=58.20 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=27.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEe
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVR 155 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~ 155 (396)
.+.+...++++||||||||+++..++.+ .|.+.++++
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3666778999999999999999877543 244444444
No 380
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.37 E-value=0.0022 Score=58.19 Aligned_cols=135 Identities=12% Similarity=0.210 Sum_probs=72.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcE--EEEecccccch---hh-----------chHHHHHHH----HHHHHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVF--INVRISNLMSK---WF-----------GDAQKLVAA----VFSLAY 179 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~~~--~~i~~~~l~~~---~~-----------g~~~~~~~~----~f~~a~ 179 (396)
...+-.+++.|++|||||+++..+...+...| +.+-++..... ++ .+.+..+.. +-....
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 34456799999999999999999987654322 21111111111 10 011111111 111111
Q ss_pred ---H---hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceE
Q 016044 180 ---K---LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFE 253 (396)
Q Consensus 180 ---~---~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~ 253 (396)
. ..+.+|++||+.. . . .-.+.+.++.. . ...-++.+|.++...-.+++.++.-.+..+-
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-~-----~k~~~l~~~~~---~---gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~ 154 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-K-----LKSKILRQFFN---N---GRHYNISIIFLSQSYFHLPPNIRSNIDYFII 154 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-h-----hhhHHHHHHHh---c---ccccceEEEEEeeecccCCHHHhhcceEEEE
Confidence 1 1257999999742 1 0 01112223332 1 1244578888888888999999887766665
Q ss_pred eCCCCHHHHHHHHHHHh
Q 016044 254 IGMPDRKERAQILKVIL 270 (396)
Q Consensus 254 ~~~P~~~er~~il~~~l 270 (396)
++ -+......+++.+.
T Consensus 155 ~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 155 FN-NSKRDLENIYRNMN 170 (241)
T ss_pred ec-CcHHHHHHHHHhcc
Confidence 64 45555555555443
No 381
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00021 Score=62.16 Aligned_cols=28 Identities=46% Similarity=0.852 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
.|+|.||||+||||+|+.|++.++.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999665443
No 382
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.35 E-value=0.00018 Score=64.44 Aligned_cols=29 Identities=45% Similarity=0.739 Sum_probs=26.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
|++.||||+||||+|+.+|..+|.+++++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998776654
No 383
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.35 E-value=0.00065 Score=64.18 Aligned_cols=70 Identities=26% Similarity=0.383 Sum_probs=45.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEecc-ccc-------chhhchHHHHHHHHHHHHHHhCCcEEEEc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRIS-NLM-------SKWFGDAQKLVAAVFSLAYKLQPAIIFID 189 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~~-~l~-------~~~~g~~~~~~~~~f~~a~~~~p~vl~iD 189 (396)
..++++.||+|+||||++++++... +..++.+.-. ++. .-...........++..+.+..|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4789999999999999999999875 2333333211 110 00001111134556677778899999999
Q ss_pred ccc
Q 016044 190 EVD 192 (396)
Q Consensus 190 Eid 192 (396)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 984
No 384
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0042 Score=60.19 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=26.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
++.++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 5678999999999999999998765 3344445443
No 385
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.35 E-value=0.0015 Score=55.94 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=42.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEecccccc--------h---h---hchHHHHHHHHHHHHHHhCCc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRISNLMS--------K---W---FGDAQKLVAAVFSLAYKLQPA 184 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~~~l~~--------~---~---~g~~~~~~~~~f~~a~~~~p~ 184 (396)
.+...+.|.||+|+|||||.+.++..... --+.++...+.. . + .... ...+-.+..+...+|.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G-~~qrl~laral~~~p~ 102 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVG-ERQMVEIARALARNAR 102 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHH-HHHHHHHHHHHhcCCC
Confidence 34567899999999999999999875421 112222211110 0 0 1111 1223344556667899
Q ss_pred EEEEccccc
Q 016044 185 IIFIDEVDS 193 (396)
Q Consensus 185 vl~iDEid~ 193 (396)
++++||-..
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999754
No 386
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.33 E-value=0.0032 Score=55.70 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
|+-++|.||+|+||||.+-.+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999998888754
No 387
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.33 E-value=0.0022 Score=59.77 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=27.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEec
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRI 156 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~ 156 (396)
+.+..-++|.|+||+|||+++..++... |.+++.++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4555678999999999999999886643 555555554
No 388
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.33 E-value=0.00022 Score=62.43 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=25.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
.-+++.|||||||||+++.++..+|..++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 357899999999999999999998865543
No 389
>PRK02496 adk adenylate kinase; Provisional
Probab=97.33 E-value=0.00019 Score=62.79 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=26.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
.+++.||||+||||+++.++..++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 389999999999999999999998776554
No 390
>PRK10436 hypothetical protein; Provisional
Probab=97.32 E-value=0.00077 Score=67.31 Aligned_cols=104 Identities=16% Similarity=0.238 Sum_probs=63.6
Q ss_pred ccccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcE
Q 016044 75 CDVINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---AVF 151 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---~~~ 151 (396)
..++.......++++++-.+...+.+.+.+.. +...+|++||+|+||||+..++..+.+ .++
T Consensus 185 lRll~~~~~~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i 249 (462)
T PRK10436 185 LRLLQQVQQALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINI 249 (462)
T ss_pred EEEeccccCCCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEE
Confidence 33444444456888988777777777665532 234578999999999999988777653 334
Q ss_pred EEEec-ccccch-----hhc-hHHHHHHHHHHHHHHhCCcEEEEccccc
Q 016044 152 INVRI-SNLMSK-----WFG-DAQKLVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 152 ~~i~~-~~l~~~-----~~g-~~~~~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
+.+.- .++.-. .++ .........+..+.+..|.+|++.|+-.
T Consensus 250 ~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 250 CSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred EEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 44331 111100 011 1112244455566678999999999853
No 391
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00016 Score=61.29 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
.++++|.|||||||+++.++ .+|..+++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 8888876654
No 392
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00039 Score=62.63 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~ 145 (396)
+.--+-|.||+|||||||.+.+|.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999997
No 393
>PF13479 AAA_24: AAA domain
Probab=97.31 E-value=0.0013 Score=58.98 Aligned_cols=21 Identities=52% Similarity=1.043 Sum_probs=18.9
Q ss_pred CceEEEECCCCCcHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAI 143 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~al 143 (396)
+..++|||+||+|||++|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 456899999999999999988
No 394
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0023 Score=61.58 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=60.8
Q ss_pred CCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CcEEEEecccccchh--------------hchHHHHHHHHHHHHHHh
Q 016044 118 KLLGPQKGVLLYGPPGTGKTMLAKAIAKESG--AVFINVRISNLMSKW--------------FGDAQKLVAAVFSLAYKL 181 (396)
Q Consensus 118 ~~~~~~~~vLL~GppGtGKT~la~ala~~~~--~~~~~i~~~~l~~~~--------------~g~~~~~~~~~f~~a~~~ 181 (396)
+.+-+..-+|+-|.||.|||||.-.++..+. .+++++...+-.... .--.+-.+..+.......
T Consensus 88 GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 88 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 3355667789999999999999988877552 368888875543321 112455667777888888
Q ss_pred CCcEEEEccccccccCCCC
Q 016044 182 QPAIIFIDEVDSFLGQRRT 200 (396)
Q Consensus 182 ~p~vl~iDEid~l~~~~~~ 200 (396)
+|.+++||-|..+....-+
T Consensus 168 ~p~lvVIDSIQT~~s~~~~ 186 (456)
T COG1066 168 KPDLVVIDSIQTLYSEEIT 186 (456)
T ss_pred CCCEEEEeccceeeccccc
Confidence 9999999999998766533
No 395
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.31 E-value=0.00074 Score=62.14 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=27.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNL 159 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l 159 (396)
|+|+|+||+||||+|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999876 456666655433
No 396
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.29 E-value=0.00083 Score=64.37 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=45.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEec-cccc-----------chh--hchHHHHHHHHHHHHHHhCCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRI-SNLM-----------SKW--FGDAQKLVAAVFSLAYKLQPAII 186 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~-~~l~-----------~~~--~g~~~~~~~~~f~~a~~~~p~vl 186 (396)
..++++.|++|+||||+++++...... .++.+.- .++. ... .+...-....++..+.+..|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 578999999999999999999986642 2222211 1111 000 11112234556777778899999
Q ss_pred EEccccc
Q 016044 187 FIDEVDS 193 (396)
Q Consensus 187 ~iDEid~ 193 (396)
++.|+-.
T Consensus 240 ivGEiR~ 246 (332)
T PRK13900 240 IVGELRG 246 (332)
T ss_pred EEEecCC
Confidence 9999853
No 397
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.29 E-value=0.00024 Score=63.88 Aligned_cols=29 Identities=45% Similarity=0.725 Sum_probs=26.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
|+++||||+||||+++.+|..+|..++++
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999766654
No 398
>PRK14527 adenylate kinase; Provisional
Probab=97.29 E-value=0.00022 Score=62.84 Aligned_cols=32 Identities=38% Similarity=0.621 Sum_probs=27.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+.-++++||||+||||+|+.++..++...++.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 46689999999999999999999988765443
No 399
>PRK06696 uridine kinase; Validated
Probab=97.29 E-value=0.00072 Score=61.13 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=32.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMS 161 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~ 161 (396)
+.-|.+.|++|+||||+|+.|+..+ |.+++.++..++..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 5568899999999999999999988 67777777766643
No 400
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.29 E-value=0.0011 Score=58.87 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=31.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc-CCcEEEEecccccch
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES-GAVFINVRISNLMSK 162 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~-~~~~~~i~~~~l~~~ 162 (396)
..|.-+++.|+||+|||+++..+...+ +..++.++...+...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 346778999999999999999999988 778888888776543
No 401
>PRK04040 adenylate kinase; Provisional
Probab=97.28 E-value=0.00029 Score=61.90 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc--CCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES--GAVFI 152 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~--~~~~~ 152 (396)
+.-++++|+|||||||+++.++..+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4568999999999999999999998 55543
No 402
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.27 E-value=0.0027 Score=56.43 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5689999999999999999983
No 403
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.26 E-value=0.0044 Score=54.50 Aligned_cols=120 Identities=23% Similarity=0.362 Sum_probs=69.1
Q ss_pred CCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcE----------------------------------EEEecccc
Q 016044 117 GKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVF----------------------------------INVRISNL 159 (396)
Q Consensus 117 ~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~----------------------------------~~i~~~~l 159 (396)
+++++.+.-+++.|+.|||||.+++.++.-. +... +.++...+
T Consensus 22 GGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 22 GGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred cCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence 3446666668899999999999999998722 2222 22211111
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE 239 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 239 (396)
. -......+.+..+....+.....|++||-+..+.... .. ....+|+..+..+.. .++ +||.|. +|+.
T Consensus 102 ~-~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~---~~----~~vl~fm~~~r~l~d--~gK-vIilTv-hp~~ 169 (235)
T COG2874 102 N-WGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD---SE----DAVLNFMTFLRKLSD--LGK-VIILTV-HPSA 169 (235)
T ss_pred c-cChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc---cH----HHHHHHHHHHHHHHh--CCC-EEEEEe-Chhh
Confidence 0 0112345556666666666677999999999875443 11 122244444444432 223 344444 4677
Q ss_pred CcHHHHhcc
Q 016044 240 LDEAILRRL 248 (396)
Q Consensus 240 l~~~l~~R~ 248 (396)
+++++..|+
T Consensus 170 l~e~~~~ri 178 (235)
T COG2874 170 LDEDVLTRI 178 (235)
T ss_pred cCHHHHHHH
Confidence 887777654
No 404
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0049 Score=60.32 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=25.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEecc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRIS 157 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~~ 157 (396)
+.-++|.||+|+||||++..+|... |..+..+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 4458899999999999999998743 3344444443
No 405
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.25 E-value=0.0051 Score=55.57 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=28.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEec
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRI 156 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~ 156 (396)
+.+...+++.|+||+|||+++..++.. .|.+.++++.
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 566677899999999999999988753 2656666655
No 406
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00087 Score=59.02 Aligned_cols=23 Identities=30% Similarity=0.652 Sum_probs=20.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
..-+.++||+||||||+.|++-.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45689999999999999999965
No 407
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.0022 Score=54.50 Aligned_cols=71 Identities=27% Similarity=0.406 Sum_probs=42.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCc--EEEEecccccc-------h---h---hchHHHHHHHHHHHHHHhCCcEE
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAV--FINVRISNLMS-------K---W---FGDAQKLVAAVFSLAYKLQPAII 186 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~--~~~i~~~~l~~-------~---~---~g~~~~~~~~~f~~a~~~~p~vl 186 (396)
+...+.|.||+|+|||+++++++...... -+.++...+.. . + ....++ .+..+..+...+|.++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~-~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQR-QRVALARALLLNPDLL 102 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHH-HHHHHHHHHhcCCCEE
Confidence 44678999999999999999999855321 12233221110 0 0 111221 2223444555678999
Q ss_pred EEccccc
Q 016044 187 FIDEVDS 193 (396)
Q Consensus 187 ~iDEid~ 193 (396)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999864
No 408
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.23 E-value=0.019 Score=53.47 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=27.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
+++-++|.||+|+||||++..+|..+ |..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35678899999999999999998755 5555555554
No 409
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.23 E-value=0.00036 Score=64.76 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
.++++.||+|+||||+.+.++....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999998653
No 410
>PF13245 AAA_19: Part of AAA domain
Probab=97.23 E-value=0.00056 Score=50.56 Aligned_cols=24 Identities=50% Similarity=0.663 Sum_probs=17.0
Q ss_pred ceEEEECCCCCcHH-HHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKT-MLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT-~la~ala~~~ 147 (396)
+-+++.|||||||| ++++.++...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566999999999 5555555544
No 411
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.23 E-value=0.00023 Score=60.21 Aligned_cols=32 Identities=41% Similarity=0.781 Sum_probs=25.5
Q ss_pred EECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 128 LYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 128 L~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
|.||||+||||+|+.||..+|..+ ++..++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHHH
Confidence 689999999999999999998654 45445443
No 412
>PLN02674 adenylate kinase
Probab=97.22 E-value=0.00035 Score=63.68 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=27.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
...++|.||||+||+|+++.+|..+|..+++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 46699999999999999999999998665543
No 413
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.20 E-value=0.00069 Score=68.79 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
+++...+++.||+|||||++.|++|.-
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 455678999999999999999999983
No 414
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.20 E-value=0.00048 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~ 147 (396)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999985
No 415
>PLN02199 shikimate kinase
Probab=97.18 E-value=0.00063 Score=63.27 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=30.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
..+|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 468999999999999999999999999988765
No 416
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.17 E-value=0.00096 Score=68.70 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=62.4
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEE
Q 016044 77 VINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---AVFIN 153 (396)
Q Consensus 77 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---~~~~~ 153 (396)
+++......++++++-.+...+.+.+.+.. +...+|++||+|+||||+..++.+..+ .+++.
T Consensus 285 ll~~~~~~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~t 349 (564)
T TIGR02538 285 ILDSSAAQLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNIST 349 (564)
T ss_pred eecCccccCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEE
Confidence 444444446788888777777777665532 124478999999999999988877664 23443
Q ss_pred Eecc------cccchhhc-hHHHHHHHHHHHHHHhCCcEEEEccccc
Q 016044 154 VRIS------NLMSKWFG-DAQKLVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 154 i~~~------~l~~~~~g-~~~~~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
+.-+ .+....+. .........+..+.+..|.+|++.|+-.
T Consensus 350 iEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 350 AEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred ecCCceecCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 3221 11111011 0111234455566778999999999854
No 417
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.17 E-value=0.0011 Score=72.37 Aligned_cols=144 Identities=17% Similarity=0.234 Sum_probs=81.9
Q ss_pred CCCCceEEEECCCCCcHHHHH-HHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHH--------------hCCc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLA-KAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYK--------------LQPA 184 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la-~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~p~ 184 (396)
+...++++++||||+|||++. -++-+++-..++.++.+.-.. ++..+..+-+.... -+..
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhhe
Confidence 445689999999999999864 677777777777777544322 12222221111100 0125
Q ss_pred EEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC------CCCcEEEEEecCCCCCC-----cHHHHhccCCceE
Q 016044 185 IIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD------QNARVMVLAATNRPSEL-----DEAILRRLPQAFE 253 (396)
Q Consensus 185 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~v~vI~atn~~~~l-----~~~l~~R~~~~i~ 253 (396)
|||.|||+ +...+.-...... -.+..++. -.|+... .-.++.+.|++|++.+. +..+.|+- ..+.
T Consensus 1566 VLFcDeIn-Lp~~~~y~~~~vI-~FlR~l~e-~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf 1641 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYYPPTVI-VFLRPLVE-RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVF 1641 (3164)
T ss_pred EEEeeccC-CccccccCCCceE-EeeHHHHH-hcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEE
Confidence 99999999 4333221111100 00001111 1112111 12468999999987643 35666654 6678
Q ss_pred eCCCCHHHHHHHHHHHhcC
Q 016044 254 IGMPDRKERAQILKVILKG 272 (396)
Q Consensus 254 ~~~P~~~er~~il~~~l~~ 272 (396)
+..|.......|...++.+
T Consensus 1642 ~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1642 CCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred ecCcchhhHHHHHHHHHHH
Confidence 8999999998888877653
No 418
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.17 E-value=0.003 Score=60.03 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=29.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---------cCCcEEEEeccc
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---------SGAVFINVRISN 158 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---------~~~~~~~i~~~~ 158 (396)
++....-+.++||||+|||+++..+|-. .+...++++...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 3666667889999999999999887642 234666776544
No 419
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.17 E-value=0.00066 Score=59.57 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=42.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEecc-cccc---hh----------hchHHHHHHHHHHHHHHhCCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRIS-NLMS---KW----------FGDAQKLVAAVFSLAYKLQPAII 186 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~~-~l~~---~~----------~g~~~~~~~~~f~~a~~~~p~vl 186 (396)
...++|.||+|+||||++++++..... ..+.+... ++.. .+ .+.........+..+.+..|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 467999999999999999999986531 12222111 1100 00 00111234455556667789999
Q ss_pred EEcccc
Q 016044 187 FIDEVD 192 (396)
Q Consensus 187 ~iDEid 192 (396)
++.|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999984
No 420
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.16 E-value=0.0014 Score=62.25 Aligned_cols=70 Identities=21% Similarity=0.355 Sum_probs=44.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEe-cccccch------hhchHHHHHHHHHHHHHHhCCcEEEEcc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVR-ISNLMSK------WFGDAQKLVAAVFSLAYKLQPAIIFIDE 190 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~-~~~l~~~------~~g~~~~~~~~~f~~a~~~~p~vl~iDE 190 (396)
..++++.|++|+||||++++++... +..++.+. ..++.-. ......-....++..+.+..|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999998865 23333332 1121100 0011112244566667778999999999
Q ss_pred cc
Q 016044 191 VD 192 (396)
Q Consensus 191 id 192 (396)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 84
No 421
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.16 E-value=0.0021 Score=55.50 Aligned_cols=33 Identities=33% Similarity=0.389 Sum_probs=26.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES---GAVFINVRISN 158 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 158 (396)
+++.||||+|||++++.++..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6889999999999999998764 56666666653
No 422
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.14 E-value=0.00033 Score=56.94 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~ 147 (396)
|+|.|+|||||||+|+.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 423
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.13 E-value=0.0022 Score=54.24 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=32.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK 162 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~ 162 (396)
.-|+|+|.||+||||+|+++.+.+ |.+.+.++...+...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 458899999999999999998865 788999998766543
No 424
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.13 E-value=0.005 Score=53.44 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=21.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
.+..-+.|.||+|+|||||.+++...
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 34466889999999999999999743
No 425
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.13 E-value=0.0016 Score=63.26 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
...-++|.||||+|||++++.+++...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 345689999999999999999999753
No 426
>PRK01184 hypothetical protein; Provisional
Probab=97.12 E-value=0.00046 Score=60.34 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=24.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
-|+|+||||+||||+++ ++++.|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999987 788888877654
No 427
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.12 E-value=0.022 Score=54.26 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
++.-++|.||+|+||||++..+|..+ +..+.-+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 35678899999999999999998865 444444544
No 428
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.11 E-value=0.00061 Score=56.02 Aligned_cols=30 Identities=33% Similarity=0.385 Sum_probs=26.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGAV 150 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~~~ 150 (396)
.+..-++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345678999999999999999999998854
No 429
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.11 E-value=0.0047 Score=58.80 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=30.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEeccc
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISN 158 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~ 158 (396)
++....-++++||||||||+++-.+|... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 35556667899999999999999998653 23677777654
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.10 E-value=0.0022 Score=57.59 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999973
No 431
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.10 E-value=0.0064 Score=53.96 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.5
Q ss_pred ceEEEECCCCCcHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIA 144 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala 144 (396)
+.++|.||.|+||||+.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999988
No 432
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.10 E-value=0.0056 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=18.4
Q ss_pred ceEEEECCCCCcHHH-HHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTM-LAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~-la~ala~~~ 147 (396)
+++++.||+|+|||+ ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 578999999999999 555555443
No 433
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.10 E-value=0.0047 Score=65.08 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=49.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHH---HcCCcEEEEecccccch----------------hhchHHHHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAK---ESGAVFINVRISNLMSK----------------WFGDAQKLVAAVFSLAY 179 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~---~~~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 179 (396)
++.+..-++++||||||||+++..++. ..|...+.++...-... .....+..+..+-....
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 466667789999999999999976544 33556666665432220 01122333333333344
Q ss_pred HhCCcEEEEcccccccc
Q 016044 180 KLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~ 196 (396)
...+.+|+||-+..+.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 45789999999999875
No 434
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.08 E-value=0.005 Score=58.81 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEeccc
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISN 158 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~ 158 (396)
++....-++++||||||||+++-.+|... +...++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 35566778999999999999999998653 23566776644
No 435
>PRK14526 adenylate kinase; Provisional
Probab=97.08 E-value=0.00054 Score=61.33 Aligned_cols=29 Identities=34% Similarity=0.669 Sum_probs=25.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
.++|.|||||||||+++.++..++..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 37899999999999999999998876554
No 436
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.08 E-value=0.0066 Score=58.30 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=28.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEeccc
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISN 158 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~ 158 (396)
++....-..|+||||||||+++..+|-.. +...++++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 35556667899999999999999886321 24566666533
No 437
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.07 E-value=0.0032 Score=54.56 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNL 159 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l 159 (396)
+.-+.|.|+||+|||++++.++..+ +..+..++...+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4568899999999999999999876 444555665443
No 438
>PRK04182 cytidylate kinase; Provisional
Probab=97.06 E-value=0.00059 Score=59.18 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
.|+|.|++|||||++++.+|..+|.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999988765
No 439
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0038 Score=57.10 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
....+-|.|++||||||++|.+..-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 45678899999999999999998844
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.06 E-value=0.00085 Score=63.79 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=44.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEec-ccccc----------hh--hchHHHHHHHHHHHHHHhCCcEE
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRI-SNLMS----------KW--FGDAQKLVAAVFSLAYKLQPAII 186 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~-~~l~~----------~~--~g~~~~~~~~~f~~a~~~~p~vl 186 (396)
...++++.||+|+||||++++++..... ..+.+.- .++.- .. .+...-....++..+....|.++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 4578999999999999999999986531 2222211 11100 00 01111234456666777899999
Q ss_pred EEcccc
Q 016044 187 FIDEVD 192 (396)
Q Consensus 187 ~iDEid 192 (396)
++||+-
T Consensus 223 i~gE~r 228 (308)
T TIGR02788 223 ILGELR 228 (308)
T ss_pred EEeccC
Confidence 999985
No 441
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0029 Score=53.92 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=32.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMS 161 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~ 161 (396)
+.-+.|+|.+|+||||+|.++...+ |...+.+++..+..
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 4568899999999999999998855 88899999876643
No 442
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.05 E-value=0.011 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~ 146 (396)
-+.+|+++|.|||++|-.+|-.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~r 25 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALR 25 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999988764
No 443
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.04 E-value=0.00064 Score=64.35 Aligned_cols=31 Identities=39% Similarity=0.545 Sum_probs=25.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-CCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES-GAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~-~~~~~~i 154 (396)
.-+++.|+|||||||+|+.+++.+ +..++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 457899999999999999999998 5554443
No 444
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.04 E-value=0.011 Score=53.55 Aligned_cols=38 Identities=32% Similarity=0.339 Sum_probs=27.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEec
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRI 156 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~ 156 (396)
.+.+...+++.||||+|||+++..++.+ .+...+.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3666788999999999999999887643 2444555543
No 445
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.04 E-value=0.0058 Score=53.63 Aligned_cols=26 Identities=42% Similarity=0.615 Sum_probs=21.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
...-++|+||||+|||+++..++...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34558999999999999999987743
No 446
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.03 E-value=0.00083 Score=64.51 Aligned_cols=71 Identities=24% Similarity=0.391 Sum_probs=45.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEec-cccc-----------ch-hhchHHHHHHHHHHHHHHhCCcEE
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRI-SNLM-----------SK-WFGDAQKLVAAVFSLAYKLQPAII 186 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~-~~l~-----------~~-~~g~~~~~~~~~f~~a~~~~p~vl 186 (396)
...++++.||+|+||||++++++..... ..+.+.- .++. .. ..+...-....++..+.+..|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 4578999999999999999999986532 2232221 1110 00 001111234456667777899999
Q ss_pred EEcccc
Q 016044 187 FIDEVD 192 (396)
Q Consensus 187 ~iDEid 192 (396)
++.|+-
T Consensus 241 ivGEiR 246 (344)
T PRK13851 241 LLGEMR 246 (344)
T ss_pred EEEeeC
Confidence 999984
No 447
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.02 E-value=0.0095 Score=62.23 Aligned_cols=162 Identities=22% Similarity=0.276 Sum_probs=87.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc--CCcE--EEEeccccc-----ch-------h---hc-------------hHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES--GAVF--INVRISNLM-----SK-------W---FG-------------DAQKL 170 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~--~~~~--~~i~~~~l~-----~~-------~---~g-------------~~~~~ 170 (396)
.+-++|.-|.|.||||++-..+... +..+ ++++-++-- +. + .+ ..+..
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l 116 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESL 116 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHH
Confidence 4678999999999999999997522 3333 334332210 00 0 01 12234
Q ss_pred HHHHHHHH-HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccC
Q 016044 171 VAAVFSLA-YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLP 249 (396)
Q Consensus 171 ~~~~f~~a-~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~ 249 (396)
+..+|... ...+|..++|||.+.+... ..+..+ ..|++ ..+.++.+|.+|...-.+.-+-.|-=+
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli~~~---~l~~~l----~fLl~-------~~P~~l~lvv~SR~rP~l~la~lRlr~ 182 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLISDP---ALHEAL----RFLLK-------HAPENLTLVVTSRSRPQLGLARLRLRD 182 (894)
T ss_pred HHHHHHHHHhhcCceEEEeccccccCcc---cHHHHH----HHHHH-------hCCCCeEEEEEeccCCCCcccceeehh
Confidence 44455443 4457899999999987322 122222 23332 236678888777532222111111001
Q ss_pred CceEeC----CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHH-HHHHHH
Q 016044 250 QAFEIG----MPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGS-DLLEVC 300 (396)
Q Consensus 250 ~~i~~~----~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~-di~~l~ 300 (396)
..++++ ..+.+|-.+++...... ++ +..++..|...++||..+ .+..+.
T Consensus 183 ~llEi~~~~Lrf~~eE~~~fl~~~~~l-~L-d~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 183 ELLEIGSEELRFDTEEAAAFLNDRGSL-PL-DAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred hHHhcChHhhcCChHHHHHHHHHcCCC-CC-ChHHHHHHHhhcccHHHHHHHHHHH
Confidence 112222 24677777777766532 12 345677888888888665 454443
No 448
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.02 E-value=0.00082 Score=60.56 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~ 147 (396)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998777776654
No 449
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.02 E-value=0.0006 Score=58.38 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
|.|+|+||||||||+++++.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 77765
No 450
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.01 E-value=0.0035 Score=57.89 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=44.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCC----cEEEEecc-cc---------cchhhchHHHHHHHHHHHHHHhCCcEEEEcc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGA----VFINVRIS-NL---------MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDE 190 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~----~~~~i~~~-~l---------~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDE 190 (396)
-||++||.||||||...++-...|. +.+.+..+ ++ ...-+|.........++.|.+..|.||++=|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEec
Confidence 3678899999999999998887653 33333221 11 1122344344444555667777999999999
Q ss_pred ccc
Q 016044 191 VDS 193 (396)
Q Consensus 191 id~ 193 (396)
+-.
T Consensus 207 mRD 209 (353)
T COG2805 207 MRD 209 (353)
T ss_pred ccc
Confidence 754
No 451
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.01 E-value=0.0024 Score=53.56 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=41.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCc--EEEEecc---cccchhhchHHHHHHHHHHHHHHhCCcEEEEccccc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGAV--FINVRIS---NLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~~~--~~~i~~~---~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
.+...+.|.||+|+||||+++.++...... -+.++.. .+.....+ .++ -+-.+..+...+|.++++||-..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~-G~~-~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG-GEK-MRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH-HHH-HHHHHHHHHhcCCCEEEEeCCcc
Confidence 345678899999999999999998854211 1111110 00011111 222 22233445566899999999754
No 452
>PTZ00035 Rad51 protein; Provisional
Probab=97.00 E-value=0.0065 Score=58.42 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~ 145 (396)
++....-+.++||||||||+++..++.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCV 140 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHH
Confidence 366666788999999999999998875
No 453
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.00 E-value=0.00072 Score=58.13 Aligned_cols=29 Identities=38% Similarity=0.700 Sum_probs=26.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
|.+.|++|||||++|+.+++.+|.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887553
No 454
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.00 E-value=0.0025 Score=61.74 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=41.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC------CcEEEEec-ccccchh------------hchHHHHHHHHHHHHHHhCC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG------AVFINVRI-SNLMSKW------------FGDAQKLVAAVFSLAYKLQP 183 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~------~~~~~i~~-~~l~~~~------------~g~~~~~~~~~f~~a~~~~p 183 (396)
...++++||+|+||||++++++.... ..++.+.- .++.... .+............+....|
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 35689999999999999999998752 23333221 1111000 01000123333444666799
Q ss_pred cEEEEcccc
Q 016044 184 AIIFIDEVD 192 (396)
Q Consensus 184 ~vl~iDEid 192 (396)
.++++.|+-
T Consensus 214 d~i~vGEiR 222 (358)
T TIGR02524 214 HAILVGEAR 222 (358)
T ss_pred CEEeeeeeC
Confidence 999999974
No 455
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.011 Score=56.87 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=35.4
Q ss_pred ccCCceEeCCCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHhCCCCcHHHHHHHHH
Q 016044 247 RLPQAFEIGMPDRKERAQILKVILKGEKVE----ENIDFDYLAGLCEGFTGSDLLEVCK 301 (396)
Q Consensus 247 R~~~~i~~~~P~~~er~~il~~~l~~~~~~----~~~~l~~la~~~~g~s~~di~~l~~ 301 (396)
-| ..|+++..+.+|-..++..+++..-+. .+-...++--++ +..|+.++.+|.
T Consensus 402 pf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 402 PF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred Cc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 45 457888999999999999888643322 222344454455 567788777774
No 456
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.99 E-value=0.002 Score=56.01 Aligned_cols=72 Identities=17% Similarity=0.082 Sum_probs=41.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEecccc---cchh-hchHHHHHHHHHHHHHHhCCcEEEEccccc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRISNL---MSKW-FGDAQKLVAAVFSLAYKLQPAIIFIDEVDS 193 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~~~l---~~~~-~g~~~~~~~~~f~~a~~~~p~vl~iDEid~ 193 (396)
.+..-+.|.||.|+|||||++.++..... --+.++...+ .... ....++ -+-.+..+....|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~-qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGEL-QRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHH-HHHHHHHHHhcCCCEEEEECCcc
Confidence 34466889999999999999999985421 0112221110 0100 112222 22234445556899999999754
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.98 E-value=0.025 Score=51.60 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 016044 126 VLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~ 146 (396)
-+|+||||+|||+++..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 489999999999999998763
No 458
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.96 E-value=0.00097 Score=57.84 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
++.-++|.|++|+||||+++.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998875
No 459
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.96 E-value=0.0014 Score=62.41 Aligned_cols=70 Identities=21% Similarity=0.405 Sum_probs=44.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEec-ccccc------hhhchHHHHHHHHHHHHHHhCCcEEEEcc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRI-SNLMS------KWFGDAQKLVAAVFSLAYKLQPAIIFIDE 190 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~-~~l~~------~~~g~~~~~~~~~f~~a~~~~p~vl~iDE 190 (396)
..++++.|++|+||||++++++... ...++.+.- .++.- .+..........++..+.+..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5789999999999999999999763 122332221 11110 00001112345666777788999999999
Q ss_pred cc
Q 016044 191 VD 192 (396)
Q Consensus 191 id 192 (396)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 84
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.96 E-value=0.006 Score=61.75 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=54.2
Q ss_pred CCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhh----------------------------ch
Q 016044 118 KLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWF----------------------------GD 166 (396)
Q Consensus 118 ~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~----------------------------g~ 166 (396)
+.+.+...+|+.||||+|||+++-.++... |.+.+++...+-..... ..
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 346677789999999999999999887743 55556655432211100 01
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEcccccccc
Q 016044 167 AQKLVAAVFSLAYKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 167 ~~~~~~~~f~~a~~~~p~vl~iDEid~l~~ 196 (396)
.+..+..+.......+|.+++||-+..+..
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 245566667777777899999999998743
No 461
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.96 E-value=0.0016 Score=57.73 Aligned_cols=24 Identities=54% Similarity=0.666 Sum_probs=18.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.-+.+.||.|||||++|-+.|.+.
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 458899999999999999988644
No 462
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.96 E-value=0.0054 Score=57.53 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc----C-CcEEEEeccc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES----G-AVFINVRISN 158 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~----~-~~~~~i~~~~ 158 (396)
.+..++|.||+|+||||++..+|..+ | ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 35678899999999999999998754 3 4555566544
No 463
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.96 E-value=0.0085 Score=51.80 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+.|.||+|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34568999999999999999999853
No 464
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0053 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=19.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
..-.-|.||+||||||+.|++-+
T Consensus 33 ~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred CceEEEECCCCcCHHHHHHHHHh
Confidence 34457999999999999999865
No 465
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.95 E-value=0.0021 Score=61.49 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=28.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
...++|.|+||+|||||++.++...+.+++.--.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~ 195 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYA 195 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehh
Confidence 3579999999999999999999998888755443
No 466
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.0083 Score=51.85 Aligned_cols=27 Identities=37% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.+...+.|.||+|+|||||++.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999998743
No 467
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.92 E-value=0.0064 Score=52.92 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.+..-+.|.||+|+||||+++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999998854
No 468
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.92 E-value=0.0011 Score=58.38 Aligned_cols=39 Identities=38% Similarity=0.529 Sum_probs=29.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchh
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKW 163 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~ 163 (396)
-++|+||+|||||.+|-++|+..|.+++..|.-......
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l 41 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPEL 41 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccccc
Confidence 368999999999999999999999999999976665543
No 469
>PLN02459 probable adenylate kinase
Probab=96.91 E-value=0.001 Score=61.01 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=26.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
..++|.||||+||+|+++.+++.+|..+++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 3488899999999999999999998665543
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.91 E-value=0.011 Score=59.83 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=29.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH----cCCcEEEEec
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE----SGAVFINVRI 156 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~----~~~~~~~i~~ 156 (396)
.+.+.+.+|+.||||||||++|..++.+ .|.+.+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4667788999999999999999988542 2566666554
No 471
>PRK14529 adenylate kinase; Provisional
Probab=96.90 E-value=0.0008 Score=60.56 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=25.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
.++|.||||+||||+++.++..++.++++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 38899999999999999999999877653
No 472
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.89 E-value=0.0056 Score=58.32 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=29.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc------C---CcEEEEeccc
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES------G---AVFINVRISN 158 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~------~---~~~~~i~~~~ 158 (396)
++.+..-+.++||||+|||+++..++... | ...++++...
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 35666778899999999999999887521 1 2556666644
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.89 E-value=0.00098 Score=58.45 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=24.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
..++|.||+|+||||+++.++...+..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 45889999999999999999998776543
No 474
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.88 E-value=0.019 Score=56.64 Aligned_cols=201 Identities=14% Similarity=0.196 Sum_probs=98.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch---------------hh-----chHHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK---------------WF-----GDAQKLVAAVFSLA 178 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~---------------~~-----g~~~~~~~~~f~~a 178 (396)
+|.-++|+|++|+||||++..+|..+ |..+.-+++...... ++ ..........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998755 556666665432110 00 01112222334444
Q ss_pred HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecC-CCCCCc--HHHHhcc-CCceEe
Q 016044 179 YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATN-RPSELD--EAILRRL-PQAFEI 254 (396)
Q Consensus 179 ~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn-~~~~l~--~~l~~R~-~~~i~~ 254 (396)
+.....+|+||=...+ .... ....++....+.. .+..++++..+. ..+..+ .++...+ ...+-+
T Consensus 179 ~~~~~DvViIDTaGr~-----~~d~----~lm~El~~i~~~~---~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~Il 246 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH-----KQED----SLFEEMLQVAEAI---QPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVII 246 (429)
T ss_pred HhCCCCEEEEECCCCC-----cchH----HHHHHHHHHhhhc---CCcEEEEEeccccChhHHHHHHHHHhccCCcEEEE
Confidence 4445678999876543 1111 1222333332222 133444444433 222221 2222221 122334
Q ss_pred CCCCHHHHHH-HHHHHh----------cCCCCC--CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH----HHHHHHhc
Q 016044 255 GMPDRKERAQ-ILKVIL----------KGEKVE--ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR----ELLDEERK 317 (396)
Q Consensus 255 ~~P~~~er~~-il~~~l----------~~~~~~--~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~----~~~~~~~~ 317 (396)
...|...|-- ++.... .+..++ ...+.+.++.+.-|. +|+..|++.|...--. +..+...+
T Consensus 247 TKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgm--gDi~~L~ek~~~~~~~~~~~~~~~k~~~ 324 (429)
T TIGR01425 247 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGM--GDIEGLIDKVQDLKLDDNEKALIEKLKE 324 (429)
T ss_pred ECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcC--CCcHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4455544441 122111 122221 234456666666553 4888888776543111 11111121
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcccch
Q 016044 318 GKPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 318 ~~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
...+.+||..-++.++.--
T Consensus 325 -------~~f~l~D~~~q~~~i~kmG 343 (429)
T TIGR01425 325 -------GTFTLRDMYEQFQNLLKMG 343 (429)
T ss_pred -------CCCCHHHHHHHHHHHHhcc
Confidence 3588999999888887653
No 475
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.88 E-value=0.0013 Score=58.09 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=25.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVF 151 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~ 151 (396)
+.-+++.|+||+||||+|+.++.+++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 35689999999999999999999988754
No 476
>PRK10867 signal recognition particle protein; Provisional
Probab=96.88 E-value=0.008 Score=59.54 Aligned_cols=200 Identities=20% Similarity=0.228 Sum_probs=99.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEecccccchh---------------h-----chHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRISNLMSKW---------------F-----GDAQKLVAAVFSL 177 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~~~l~~~~---------------~-----g~~~~~~~~~f~~ 177 (396)
+|.-++++|++|+||||++..+|..+ |..+..+++....... + .............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 46778999999999999888887643 5556666664332110 0 1122333344445
Q ss_pred HHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC-CCCCc--HHHHhccC-CceE
Q 016044 178 AYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR-PSELD--EAILRRLP-QAFE 253 (396)
Q Consensus 178 a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~-~~~l~--~~l~~R~~-~~i~ 253 (396)
+......++++|=...+.. ... ...++....+... +..++++..+.. .+.++ ..+..++. ..+-
T Consensus 179 a~~~~~DvVIIDTaGrl~~-----d~~----lm~eL~~i~~~v~---p~evllVlda~~gq~av~~a~~F~~~~~i~giI 246 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHI-----DEE----LMDELKAIKAAVN---PDEILLVVDAMTGQDAVNTAKAFNEALGLTGVI 246 (433)
T ss_pred HHhcCCCEEEEeCCCCccc-----CHH----HHHHHHHHHHhhC---CCeEEEEEecccHHHHHHHHHHHHhhCCCCEEE
Confidence 5555567999998765421 111 1122222222221 333444443322 12221 22222221 2233
Q ss_pred eCCCCHHHHHHHHHHHhc-----------CCCCC--CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHH----HHHHHHHh
Q 016044 254 IGMPDRKERAQILKVILK-----------GEKVE--ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSI----RELLDEER 316 (396)
Q Consensus 254 ~~~P~~~er~~il~~~l~-----------~~~~~--~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~----~~~~~~~~ 316 (396)
+...|...+.-.+-.... +..++ ...+.+.++.+.-|. +|+..|++.|...-- .+..+...
T Consensus 247 lTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgm--gD~~~l~e~~~~~~~~~~~~~~~~~~~ 324 (433)
T PRK10867 247 LTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGM--GDVLSLIEKAQEVVDEEKAEKLAKKLK 324 (433)
T ss_pred EeCccCcccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCC--CChHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 444554433322222111 22221 234466777766553 588888887654311 11121222
Q ss_pred cCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 317 KGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 317 ~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
+ ...+.+||..-++.++.-
T Consensus 325 ~-------g~f~l~d~~~q~~~~~km 343 (433)
T PRK10867 325 K-------GKFDLEDFLEQLQQMKKM 343 (433)
T ss_pred h-------CCCCHHHHHHHHHHHHhc
Confidence 1 347889999988887665
No 477
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.01 Score=51.20 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.+...+.|.||+|+||||+.+.++...
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345678999999999999999999854
No 478
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.87 E-value=0.0067 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
+..++.||.|+|||++.++++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999854
No 479
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.87 E-value=0.0047 Score=53.39 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+++.||+|.||||+.|.+..+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34558999999999999999998854
No 480
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.0074 Score=58.27 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 92 GLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 92 G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
+.+.+...+.+.+...+..+..+. ..+++.++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~----~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD----LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce----ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 345555666555544333322221 2346778999999999999999998754 4444445543
No 481
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.84 E-value=0.0023 Score=62.87 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=27.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
.+.|.|.|++|||||||+++|+...|..++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 3679999999999999999999998877543
No 482
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.84 E-value=0.0037 Score=60.24 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
....+|+||||||||++++.+++.+
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3457999999999999999998866
No 483
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.83 E-value=0.0026 Score=60.50 Aligned_cols=54 Identities=30% Similarity=0.414 Sum_probs=40.0
Q ss_pred ccc-cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 86 EFE-SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 86 ~~~-~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.|+ ++.|+++.+.++..++. ..+.+ +-...+-++|.||+|+|||++++.+.+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk-------~AA~g-~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFK-------SAAQG-LEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccccccCcHHHHHHHHHHHH-------HHHhc-cCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 355 89999999999877653 22222 12234567899999999999999998855
No 484
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.83 E-value=0.014 Score=52.60 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
...++|.||.|+|||++.+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999977
No 485
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.83 E-value=0.0047 Score=54.11 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 016044 126 VLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~ 145 (396)
++|+||.|+|||++.|.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 486
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.82 E-value=0.0091 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||.|||||||.|+++.-+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4567899999999999999999833
No 487
>PRK12338 hypothetical protein; Provisional
Probab=96.78 E-value=0.0016 Score=61.50 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=26.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
|.-+++.|+|||||||+|+++|..+|...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 567899999999999999999999987653
No 488
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.78 E-value=0.0022 Score=57.24 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC-CcEEEEecccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG-AVFINVRISNL 159 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~-~~~~~i~~~~l 159 (396)
+.-|.|.|++||||||+++.|+..++ ..+..++...+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 45688999999999999999999884 33444554443
No 489
>PRK13808 adenylate kinase; Provisional
Probab=96.77 E-value=0.0013 Score=62.64 Aligned_cols=29 Identities=34% Similarity=0.712 Sum_probs=25.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
|+|+||||+|||++++.|+..+|..++++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 89999999999999999999998765554
No 490
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.77 E-value=0.0015 Score=56.98 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=26.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK 162 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~ 162 (396)
|.|+|++||||||+++.+++ +|.+++. +..+...
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~--~D~~~~~ 35 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVID--ADKIAHE 35 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEe--cCHHHHh
Confidence 68999999999999999998 7876654 4454433
No 491
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.77 E-value=0.017 Score=52.31 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=19.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
.--+.|.||+||||||+.|.|-+
T Consensus 27 gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 34578999999999999999866
No 492
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.76 E-value=0.022 Score=49.37 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.+...+.|.||+|+|||||++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345678999999999999999998853
No 493
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.76 E-value=0.022 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
+-++|.||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999874
No 494
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.76 E-value=0.0015 Score=57.28 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=24.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHc-CCcEEEEe
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES-GAVFINVR 155 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~-~~~~~~i~ 155 (396)
|.+.|+|||||||+|+.++..+ +..++..+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 5788999999999999999988 45554443
No 495
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.76 E-value=0.0016 Score=61.60 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=31.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
.-+++.||+|||||++|..+|.+++..+++.|.-.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 568899999999999999999999988887776444
No 496
>PLN02165 adenylate isopentenyltransferase
Probab=96.72 E-value=0.0016 Score=61.72 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=29.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS 157 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~ 157 (396)
...++|.||+|+|||+++..+|..++..++..+.-
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 34689999999999999999999998877776544
No 497
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.72 E-value=0.0075 Score=55.70 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=27.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEeccc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISN 158 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~ 158 (396)
+....-.=|+||||||||.+|-.+|-.. +...++++...
T Consensus 35 i~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 35 IPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG 82 (256)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS
T ss_pred CCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC
Confidence 4433444599999999999999887543 34577777643
No 498
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.71 E-value=0.002 Score=62.42 Aligned_cols=45 Identities=33% Similarity=0.572 Sum_probs=37.1
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..+.+|-.-.+.++++|.+. ..|+|+.||||.||||+|+|+|.-+
T Consensus 243 k~~ledY~L~dkl~eRL~er-------------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEER-------------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhh-------------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 36777877788888888542 3789999999999999999999844
No 499
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.70 E-value=0.0021 Score=56.06 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=27.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccccc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLM 160 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~ 160 (396)
|.+.|+|||||||+|+.++..+ +.+...++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 6789999999999999999986 3455666665554
No 500
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.70 E-value=0.013 Score=56.25 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEeccc
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISN 158 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~ 158 (396)
++.+..-+.++|+||+|||+++..+|... +...++++...
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 35556668899999999999998877421 22566776644
Done!