Query 016044
Match_columns 396
No_of_seqs 424 out of 3812
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 3.9E-51 1.3E-55 393.2 27.2 247 81-342 141-392 (405)
2 4b4t_I 26S protease regulatory 100.0 8.4E-50 2.9E-54 384.7 22.4 247 81-342 175-426 (437)
3 4b4t_M 26S protease regulatory 100.0 3.6E-49 1.2E-53 385.2 23.0 248 81-343 174-426 (434)
4 4b4t_H 26S protease regulatory 100.0 2.5E-48 8.4E-53 378.0 27.6 247 81-342 202-453 (467)
5 4b4t_L 26S protease subunit RP 100.0 6E-49 2E-53 383.9 23.2 247 81-342 174-425 (437)
6 3cf2_A TER ATPase, transitiona 100.0 2E-49 6.9E-54 412.3 20.6 300 81-394 197-503 (806)
7 4b4t_K 26S protease regulatory 100.0 1.6E-47 5.3E-52 373.4 25.2 244 81-339 165-414 (428)
8 3cf2_A TER ATPase, transitiona 100.0 6.6E-46 2.3E-50 385.9 12.0 262 80-344 469-748 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.6E-41 1.2E-45 320.9 25.9 260 81-343 5-303 (322)
10 3eie_A Vacuolar protein sortin 100.0 4.6E-40 1.6E-44 313.6 24.5 260 81-343 11-302 (322)
11 3hu3_A Transitional endoplasmi 100.0 2.4E-40 8.4E-45 330.4 22.4 278 83-365 199-483 (489)
12 2x8a_A Nuclear valosin-contain 100.0 2.3E-39 8E-44 301.2 24.0 259 81-343 3-268 (274)
13 2qp9_X Vacuolar protein sortin 100.0 2.3E-39 8E-44 312.4 22.4 264 77-343 40-335 (355)
14 3cf0_A Transitional endoplasmi 100.0 4E-39 1.4E-43 304.2 20.1 260 81-343 8-285 (301)
15 2zan_A Vacuolar protein sortin 100.0 1.2E-38 4E-43 316.2 20.6 264 77-343 123-425 (444)
16 3d8b_A Fidgetin-like protein 1 100.0 4E-37 1.4E-41 297.2 22.7 267 74-343 71-338 (357)
17 3b9p_A CG5977-PA, isoform A; A 100.0 2.4E-36 8E-41 284.5 20.7 261 81-343 14-276 (297)
18 3vfd_A Spastin; ATPase, microt 100.0 3.4E-36 1.2E-40 294.2 22.0 271 69-342 97-368 (389)
19 3h4m_A Proteasome-activating n 100.0 4.4E-35 1.5E-39 274.1 25.4 247 81-342 10-261 (285)
20 2ce7_A Cell division protein F 100.0 5.7E-35 1.9E-39 289.4 26.0 248 78-341 5-258 (476)
21 1lv7_A FTSH; alpha/beta domain 100.0 1.3E-34 4.4E-39 267.1 23.7 245 80-340 4-253 (257)
22 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.9E-34 1.3E-38 264.2 17.5 244 83-342 1-252 (262)
23 1ypw_A Transitional endoplasmi 100.0 2.4E-33 8.2E-38 296.1 23.3 300 81-394 197-503 (806)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 1.4E-32 4.9E-37 273.7 25.3 244 83-342 26-274 (499)
25 1ixz_A ATP-dependent metallopr 100.0 6.7E-32 2.3E-36 248.4 22.7 241 80-336 8-253 (254)
26 2r62_A Cell division protease 100.0 2.6E-34 8.8E-39 266.6 1.4 249 79-342 2-256 (268)
27 1ypw_A Transitional endoplasmi 100.0 1.3E-34 4.3E-39 305.9 -3.9 260 81-343 470-747 (806)
28 1iy2_A ATP-dependent metallopr 100.0 3E-30 1E-34 240.6 25.6 239 82-336 34-277 (278)
29 3t15_A Ribulose bisphosphate c 99.9 2.4E-26 8.3E-31 215.7 11.4 173 120-298 33-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 2.7E-25 9.1E-30 221.2 -0.5 203 81-302 30-262 (456)
31 3syl_A Protein CBBX; photosynt 99.9 1.9E-23 6.5E-28 197.2 11.9 215 89-313 32-268 (309)
32 3uk6_A RUVB-like 2; hexameric 99.9 4E-21 1.4E-25 185.7 18.6 221 83-340 39-331 (368)
33 3pfi_A Holliday junction ATP-d 99.8 3.2E-20 1.1E-24 177.4 19.0 218 82-340 23-255 (338)
34 1ofh_A ATP-dependent HSL prote 99.8 6.1E-21 2.1E-25 179.7 13.7 246 88-339 15-299 (310)
35 3m6a_A ATP-dependent protease 99.8 1.3E-21 4.5E-26 198.2 5.7 234 85-341 78-343 (543)
36 1hqc_A RUVB; extended AAA-ATPa 99.8 1.6E-19 5.4E-24 171.3 14.9 218 82-339 6-238 (324)
37 3hws_A ATP-dependent CLP prote 99.8 7.2E-20 2.5E-24 176.8 12.6 241 90-335 17-345 (363)
38 1g41_A Heat shock protein HSLU 99.8 1.4E-18 4.9E-23 169.7 19.1 245 88-338 15-432 (444)
39 3pvs_A Replication-associated 99.8 1E-18 3.5E-23 172.6 17.7 206 84-339 22-244 (447)
40 2z4s_A Chromosomal replication 99.8 7.9E-19 2.7E-23 173.5 16.1 220 83-340 100-333 (440)
41 2chg_A Replication factor C sm 99.8 5.9E-18 2E-22 150.7 19.4 202 82-337 11-224 (226)
42 1jbk_A CLPB protein; beta barr 99.8 3.5E-19 1.2E-23 155.0 10.7 159 84-266 18-194 (195)
43 1d2n_A N-ethylmaleimide-sensit 99.8 6.7E-19 2.3E-23 163.1 13.0 206 88-303 33-245 (272)
44 1l8q_A Chromosomal replication 99.8 4.2E-18 1.4E-22 161.8 17.2 197 83-306 6-214 (324)
45 2v1u_A Cell division control p 99.8 6.7E-18 2.3E-22 163.5 17.8 224 86-340 17-277 (387)
46 3pxg_A Negative regulator of g 99.8 2.1E-18 7.1E-23 171.9 14.3 184 84-306 176-384 (468)
47 1sxj_A Activator 1 95 kDa subu 99.8 1.9E-18 6.6E-23 174.3 12.5 195 82-290 33-243 (516)
48 3bos_A Putative DNA replicatio 99.8 1.9E-17 6.4E-22 149.7 17.7 205 84-337 24-241 (242)
49 1njg_A DNA polymerase III subu 99.8 4.4E-18 1.5E-22 153.5 13.1 202 83-336 18-248 (250)
50 1r6b_X CLPA protein; AAA+, N-t 99.8 1.5E-17 5E-22 175.6 18.9 224 85-339 183-433 (758)
51 1um8_A ATP-dependent CLP prote 99.7 3.9E-18 1.3E-22 165.4 12.1 243 89-337 22-363 (376)
52 2r44_A Uncharacterized protein 99.7 1.1E-17 3.9E-22 159.3 14.8 159 86-273 25-201 (331)
53 4fcw_A Chaperone protein CLPB; 99.7 1.7E-17 5.8E-22 156.4 15.7 210 88-313 17-284 (311)
54 2qby_B CDC6 homolog 3, cell di 99.7 5.5E-17 1.9E-21 157.3 19.7 215 87-340 19-271 (384)
55 3u61_B DNA polymerase accessor 99.7 2.4E-17 8.1E-22 156.5 15.5 174 83-291 21-208 (324)
56 1g8p_A Magnesium-chelatase 38 99.7 1.4E-17 4.7E-22 159.6 12.9 221 82-342 18-325 (350)
57 2p65_A Hypothetical protein PF 99.7 1.3E-17 4.4E-22 144.5 11.4 151 84-258 18-187 (187)
58 1sxj_D Activator 1 41 kDa subu 99.7 1.2E-16 4.1E-21 153.1 17.5 213 82-338 31-262 (353)
59 1qvr_A CLPB protein; coiled co 99.7 2.2E-17 7.7E-22 176.1 13.7 200 84-307 166-392 (854)
60 3pxi_A Negative regulator of g 99.7 4E-17 1.4E-21 172.2 13.3 184 84-306 176-384 (758)
61 2qby_A CDC6 homolog 1, cell di 99.7 5.5E-16 1.9E-20 149.9 20.0 223 85-340 17-273 (386)
62 3pxi_A Negative regulator of g 99.7 1.8E-16 6.1E-21 167.2 17.5 205 88-312 491-729 (758)
63 1jr3_A DNA polymerase III subu 99.7 2.2E-16 7.7E-21 152.4 16.6 186 83-304 11-225 (373)
64 1in4_A RUVB, holliday junction 99.7 1.8E-15 6.2E-20 144.2 22.6 216 84-340 21-251 (334)
65 3te6_A Regulatory protein SIR3 99.7 8.3E-17 2.8E-21 151.2 12.3 159 90-272 22-213 (318)
66 1fnn_A CDC6P, cell division co 99.7 1.2E-15 3.9E-20 148.0 20.8 222 86-341 15-276 (389)
67 2chq_A Replication factor C sm 99.7 1.7E-16 5.8E-21 149.7 14.4 190 81-303 10-207 (319)
68 1r6b_X CLPA protein; AAA+, N-t 99.7 2.4E-16 8.2E-21 166.3 16.6 205 88-312 458-720 (758)
69 1sxj_B Activator 1 37 kDa subu 99.7 7.5E-16 2.6E-20 145.5 17.7 186 82-304 15-213 (323)
70 1iqp_A RFCS; clamp loader, ext 99.7 1.1E-15 3.6E-20 144.7 17.8 190 82-304 19-216 (327)
71 2bjv_A PSP operon transcriptio 99.7 1.7E-16 5.7E-21 146.3 9.2 152 85-263 3-183 (265)
72 1sxj_E Activator 1 40 kDa subu 99.6 2.3E-15 7.8E-20 144.4 14.9 191 81-305 7-242 (354)
73 1qvr_A CLPB protein; coiled co 99.6 2.6E-15 8.9E-20 160.1 16.0 210 87-313 557-825 (854)
74 1ojl_A Transcriptional regulat 99.6 4.5E-17 1.5E-21 153.2 1.5 156 88-270 2-190 (304)
75 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 4E-16 1.4E-20 155.5 6.7 153 89-270 23-196 (500)
76 3f9v_A Minichromosome maintena 99.6 1.9E-16 6.3E-21 161.9 1.9 168 88-273 295-493 (595)
77 3n70_A Transport activator; si 99.6 2E-15 6.8E-20 126.2 6.2 132 89-258 2-143 (145)
78 1sxj_C Activator 1 40 kDa subu 99.6 3.6E-14 1.2E-18 135.5 14.7 172 83-290 20-203 (340)
79 3co5_A Putative two-component 99.5 1.6E-15 5.5E-20 126.5 4.0 132 89-258 5-141 (143)
80 1a5t_A Delta prime, HOLB; zinc 99.5 2.4E-13 8.3E-18 129.5 15.9 157 122-302 23-207 (334)
81 3cmw_A Protein RECA, recombina 99.4 2E-13 6.8E-18 151.4 11.3 153 81-236 1013-1217(1706)
82 1w5s_A Origin recognition comp 99.4 2.4E-12 8.3E-17 125.6 17.7 207 87-308 21-274 (412)
83 3k1j_A LON protease, ATP-depen 99.4 1.2E-13 4E-18 141.9 7.5 52 81-148 34-85 (604)
84 2krk_A 26S protease regulatory 99.4 3.6E-13 1.2E-17 101.5 6.6 77 254-342 8-84 (86)
85 2gno_A DNA polymerase III, gam 99.4 1.4E-12 4.8E-17 122.3 12.0 142 92-270 1-152 (305)
86 3kw6_A 26S protease regulatory 99.4 1E-12 3.4E-17 97.4 7.3 76 255-342 1-76 (78)
87 1ny5_A Transcriptional regulat 99.3 2.4E-12 8.1E-17 125.0 8.7 215 87-335 136-383 (387)
88 3vlf_B 26S protease regulatory 99.3 8.9E-12 3E-16 94.4 7.6 73 258-342 2-74 (88)
89 4akg_A Glutathione S-transfera 99.2 9.2E-12 3.1E-16 143.7 9.5 140 123-272 1267-1433(2695)
90 3aji_B S6C, proteasome (prosom 99.2 1.1E-11 3.8E-16 92.9 5.8 74 258-343 2-75 (83)
91 3dzd_A Transcriptional regulat 99.2 2.3E-11 7.9E-16 117.1 7.5 194 88-315 129-354 (368)
92 3ec2_A DNA replication protein 99.1 1.3E-10 4.4E-15 100.3 9.3 99 83-194 5-112 (180)
93 2kjq_A DNAA-related protein; s 99.1 4.2E-10 1.4E-14 94.1 9.8 105 123-255 36-146 (149)
94 2fna_A Conserved hypothetical 99.1 9.2E-09 3.2E-13 97.7 20.0 187 84-302 9-252 (357)
95 2w58_A DNAI, primosome compone 99.0 2.5E-10 8.6E-15 100.2 7.3 101 83-195 20-128 (202)
96 3f8t_A Predicted ATPase involv 99.0 1E-10 3.5E-15 113.8 5.0 221 90-342 215-486 (506)
97 2qen_A Walker-type ATPase; unk 99.0 1.7E-08 5.7E-13 95.7 19.9 191 84-302 8-248 (350)
98 2dzn_B 26S protease regulatory 99.0 1.5E-10 5E-15 86.5 2.3 69 260-340 1-69 (82)
99 2r2a_A Uncharacterized protein 98.9 5E-10 1.7E-14 98.2 4.1 127 124-260 6-156 (199)
100 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.4E-09 4.8E-14 101.3 5.3 119 120-243 120-241 (331)
101 4akg_A Glutathione S-transfera 98.8 1.8E-08 6.3E-13 116.7 14.2 134 123-268 645-791 (2695)
102 1tue_A Replication protein E1; 98.8 1.2E-08 4.1E-13 88.7 7.5 110 123-257 58-179 (212)
103 2qgz_A Helicase loader, putati 98.7 4.5E-09 1.5E-13 98.6 4.2 98 84-194 120-226 (308)
104 3vkg_A Dynein heavy chain, cyt 98.6 6.5E-08 2.2E-12 112.9 9.7 139 123-271 1304-1470(3245)
105 3vkg_A Dynein heavy chain, cyt 98.5 8.5E-07 2.9E-11 103.7 14.1 133 124-268 605-751 (3245)
106 1u0j_A DNA replication protein 98.5 3E-07 1E-11 83.5 7.9 28 122-149 103-130 (267)
107 1jr3_D DNA polymerase III, del 98.4 6.7E-07 2.3E-11 85.0 10.3 158 123-302 18-187 (343)
108 3cmu_A Protein RECA, recombina 98.4 6.5E-07 2.2E-11 101.0 11.4 113 119-233 1423-1560(2050)
109 1ye8_A Protein THEP1, hypothet 98.4 3.4E-06 1.2E-10 72.3 11.9 27 125-151 2-28 (178)
110 2c9o_A RUVB-like 1; hexameric 98.2 3.6E-06 1.2E-10 83.1 8.5 128 183-339 296-437 (456)
111 1z6t_A APAF-1, apoptotic prote 98.1 4.6E-05 1.6E-09 77.6 15.4 176 84-300 120-328 (591)
112 1svm_A Large T antigen; AAA+ f 98.1 1.5E-06 5E-11 83.4 3.7 105 120-246 166-272 (377)
113 2w0m_A SSO2452; RECA, SSPF, un 98.0 7.1E-05 2.4E-09 66.2 12.5 36 120-155 20-58 (235)
114 3hr8_A Protein RECA; alpha and 98.0 4.4E-05 1.5E-09 72.5 11.4 78 119-196 57-153 (356)
115 2cvh_A DNA repair and recombin 97.9 9.4E-05 3.2E-09 64.9 11.9 39 120-158 17-55 (220)
116 1qhx_A CPT, protein (chloramph 97.9 2.7E-05 9.3E-10 66.1 7.7 35 123-157 3-37 (178)
117 1n0w_A DNA repair protein RAD5 97.9 4.5E-05 1.5E-09 68.1 9.5 78 120-197 21-134 (243)
118 1xp8_A RECA protein, recombina 97.9 9.7E-05 3.3E-09 70.5 12.2 78 119-196 70-166 (366)
119 2zr9_A Protein RECA, recombina 97.8 3.4E-05 1.2E-09 73.3 8.1 78 119-196 57-153 (349)
120 2r8r_A Sensor protein; KDPD, P 97.8 0.00055 1.9E-08 60.4 14.9 155 124-301 7-202 (228)
121 1v5w_A DMC1, meiotic recombina 97.8 9.1E-05 3.1E-09 70.2 10.3 79 119-197 118-234 (343)
122 3sfz_A APAF-1, apoptotic pepti 97.8 0.00029 9.8E-09 77.7 15.8 177 84-299 120-327 (1249)
123 1u94_A RECA protein, recombina 97.8 6.8E-05 2.3E-09 71.4 9.3 77 120-196 60-155 (356)
124 2z43_A DNA repair and recombin 97.8 6.9E-05 2.4E-09 70.5 9.3 78 119-196 103-217 (324)
125 3trf_A Shikimate kinase, SK; a 97.8 1.5E-05 5.2E-10 68.2 3.8 33 123-155 5-37 (185)
126 2p5t_B PEZT; postsegregational 97.7 0.00013 4.5E-09 65.9 10.2 39 121-159 30-68 (253)
127 1gvn_B Zeta; postsegregational 97.7 0.00014 4.8E-09 67.1 10.5 38 122-159 32-69 (287)
128 3vaa_A Shikimate kinase, SK; s 97.7 2.1E-05 7.2E-10 68.4 4.0 34 122-155 24-57 (199)
129 3cmu_A Protein RECA, recombina 97.7 0.00025 8.6E-09 80.3 12.9 78 119-196 728-824 (2050)
130 2ehv_A Hypothetical protein PH 97.6 0.00026 9E-09 63.3 10.4 25 120-144 27-51 (251)
131 3lda_A DNA repair protein RAD5 97.6 0.00027 9.3E-09 68.2 10.6 79 119-197 174-288 (400)
132 3iij_A Coilin-interacting nucl 97.6 4E-05 1.4E-09 65.3 4.1 32 123-154 11-42 (180)
133 3kb2_A SPBC2 prophage-derived 97.6 4.2E-05 1.4E-09 64.4 4.1 31 125-155 3-33 (173)
134 2iut_A DNA translocase FTSK; n 97.6 0.00055 1.9E-08 68.6 12.7 74 184-267 345-420 (574)
135 3io5_A Recombination and repai 97.6 0.00021 7.2E-09 66.3 8.9 75 120-196 26-125 (333)
136 2rhm_A Putative kinase; P-loop 97.6 4.2E-05 1.4E-09 65.8 3.9 33 122-154 4-36 (193)
137 2dr3_A UPF0273 protein PH0284; 97.6 0.00087 3E-08 59.7 12.8 37 120-156 20-59 (247)
138 1via_A Shikimate kinase; struc 97.6 3.9E-05 1.3E-09 65.1 3.6 30 125-154 6-35 (175)
139 4a74_A DNA repair and recombin 97.6 0.0002 6.7E-09 63.2 8.3 28 120-147 22-49 (231)
140 1zuh_A Shikimate kinase; alpha 97.5 4.6E-05 1.6E-09 64.2 3.7 32 124-155 8-39 (168)
141 2iyv_A Shikimate kinase, SK; t 97.5 4.3E-05 1.5E-09 65.3 3.6 31 125-155 4-34 (184)
142 1y63_A LMAJ004144AAA protein; 97.5 4.6E-05 1.6E-09 65.4 3.6 32 123-154 10-42 (184)
143 1kag_A SKI, shikimate kinase I 97.5 7.9E-05 2.7E-09 62.9 4.7 30 124-153 5-34 (173)
144 3crm_A TRNA delta(2)-isopenten 97.5 8.9E-05 3E-09 69.3 5.4 36 124-159 6-41 (323)
145 3upu_A ATP-dependent DNA helic 97.5 0.0002 6.8E-09 70.7 8.2 53 80-147 16-69 (459)
146 1vma_A Cell division protein F 97.5 0.0035 1.2E-07 58.2 16.2 36 122-157 103-141 (306)
147 2orw_A Thymidine kinase; TMTK, 97.5 0.00014 4.8E-09 62.4 6.2 31 124-154 4-37 (184)
148 2cdn_A Adenylate kinase; phosp 97.5 6.9E-05 2.4E-09 65.1 4.1 32 123-154 20-51 (201)
149 1pzn_A RAD51, DNA repair and r 97.5 0.00037 1.3E-08 66.2 9.4 39 120-158 128-175 (349)
150 1tev_A UMP-CMP kinase; ploop, 97.5 6.3E-05 2.2E-09 64.6 3.8 32 123-154 3-34 (196)
151 2c95_A Adenylate kinase 1; tra 97.5 6.8E-05 2.3E-09 64.6 3.8 33 123-155 9-41 (196)
152 3umf_A Adenylate kinase; rossm 97.5 8.8E-05 3E-09 65.5 4.5 34 120-153 26-59 (217)
153 2ze6_A Isopentenyl transferase 97.4 8.2E-05 2.8E-09 67.4 4.2 33 125-157 3-35 (253)
154 1aky_A Adenylate kinase; ATP:A 97.4 0.00011 3.8E-09 64.8 4.9 32 123-154 4-35 (220)
155 3lw7_A Adenylate kinase relate 97.4 7E-05 2.4E-09 63.0 3.4 29 125-154 3-31 (179)
156 1e6c_A Shikimate kinase; phosp 97.4 7.3E-05 2.5E-09 63.0 3.5 31 124-154 3-33 (173)
157 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00033 1.1E-08 63.6 8.0 37 123-159 4-43 (260)
158 2i1q_A DNA repair and recombin 97.4 0.00027 9.4E-09 66.2 7.7 28 119-146 94-121 (322)
159 2a5y_B CED-4; apoptosis; HET: 97.4 0.0009 3.1E-08 67.5 12.0 166 91-292 131-330 (549)
160 1zp6_A Hypothetical protein AT 97.4 8.5E-05 2.9E-09 63.8 3.8 37 122-158 8-44 (191)
161 3t61_A Gluconokinase; PSI-biol 97.4 0.00011 3.7E-09 63.9 4.2 32 123-154 18-49 (202)
162 2b8t_A Thymidine kinase; deoxy 97.4 0.00062 2.1E-08 60.2 9.1 70 124-194 13-101 (223)
163 1zd8_A GTP:AMP phosphotransfer 97.4 9.1E-05 3.1E-09 65.7 3.6 32 123-154 7-38 (227)
164 3tlx_A Adenylate kinase 2; str 97.4 0.00011 3.6E-09 66.2 4.0 33 122-154 28-60 (243)
165 3cm0_A Adenylate kinase; ATP-b 97.4 0.00011 3.9E-09 62.7 4.0 31 124-154 5-35 (186)
166 3sr0_A Adenylate kinase; phosp 97.4 0.00012 4.2E-09 64.0 4.4 28 126-153 3-30 (206)
167 2bwj_A Adenylate kinase 5; pho 97.4 9.2E-05 3.2E-09 63.9 3.5 32 123-154 12-43 (199)
168 1ukz_A Uridylate kinase; trans 97.4 0.00011 3.9E-09 63.7 4.0 33 123-155 15-47 (203)
169 3dl0_A Adenylate kinase; phosp 97.3 9.8E-05 3.4E-09 64.8 3.5 30 125-154 2-31 (216)
170 1ly1_A Polynucleotide kinase; 97.3 0.00011 3.6E-09 62.3 3.5 29 124-152 3-32 (181)
171 2pt5_A Shikimate kinase, SK; a 97.3 0.00011 3.7E-09 61.7 3.5 30 125-154 2-31 (168)
172 1qf9_A UMP/CMP kinase, protein 97.3 0.0001 3.6E-09 63.1 3.4 32 123-154 6-37 (194)
173 3fb4_A Adenylate kinase; psych 97.3 0.0001 3.6E-09 64.6 3.5 30 125-154 2-31 (216)
174 3jvv_A Twitching mobility prot 97.3 0.00038 1.3E-08 66.2 7.6 69 124-192 124-206 (356)
175 1ak2_A Adenylate kinase isoenz 97.3 0.00018 6.1E-09 64.1 5.0 32 123-154 16-47 (233)
176 1vt4_I APAF-1 related killer D 97.3 0.0043 1.5E-07 66.3 16.0 43 91-146 131-173 (1221)
177 2vli_A Antibiotic resistance p 97.3 0.00011 3.7E-09 62.6 3.4 30 123-152 5-34 (183)
178 1knq_A Gluconate kinase; ALFA/ 97.3 0.00019 6.4E-09 60.7 4.8 31 123-153 8-38 (175)
179 1kht_A Adenylate kinase; phosp 97.3 0.00014 4.9E-09 62.2 4.0 25 124-148 4-28 (192)
180 4eun_A Thermoresistant glucoki 97.3 0.0002 6.8E-09 62.2 4.9 30 123-152 29-58 (200)
181 1zak_A Adenylate kinase; ATP:A 97.3 8.3E-05 2.9E-09 65.7 2.5 31 123-153 5-35 (222)
182 1nlf_A Regulatory protein REPA 97.3 0.0019 6.6E-08 59.0 11.6 27 120-146 27-53 (279)
183 1g5t_A COB(I)alamin adenosyltr 97.3 0.0025 8.4E-08 54.9 11.3 116 124-254 29-177 (196)
184 3be4_A Adenylate kinase; malar 97.3 0.00013 4.5E-09 64.2 3.3 31 124-154 6-36 (217)
185 2ius_A DNA translocase FTSK; n 97.3 0.0043 1.5E-07 61.6 14.4 74 185-268 300-375 (512)
186 3e1s_A Exodeoxyribonuclease V, 97.2 0.00035 1.2E-08 70.7 6.6 33 124-156 205-240 (574)
187 2r6a_A DNAB helicase, replicat 97.2 0.0027 9.2E-08 62.4 12.8 38 119-156 199-240 (454)
188 2fz4_A DNA repair protein RAD2 97.2 0.0015 5.2E-08 58.3 9.6 34 124-157 109-142 (237)
189 3dm5_A SRP54, signal recogniti 97.2 0.0027 9.2E-08 61.8 11.9 200 122-342 99-343 (443)
190 2q6t_A DNAB replication FORK h 97.2 0.0045 1.5E-07 60.6 13.7 37 120-156 197-237 (444)
191 2pez_A Bifunctional 3'-phospho 97.2 0.00038 1.3E-08 59.1 5.2 35 123-157 5-42 (179)
192 2pbr_A DTMP kinase, thymidylat 97.2 0.00032 1.1E-08 60.1 4.8 31 125-155 2-35 (195)
193 2eyu_A Twitching motility prot 97.2 0.00057 2E-08 62.1 6.5 70 123-192 25-108 (261)
194 1e4v_A Adenylate kinase; trans 97.1 0.00027 9.3E-09 62.0 4.1 30 125-154 2-31 (214)
195 2zts_A Putative uncharacterize 97.1 0.0036 1.2E-07 55.7 11.4 37 120-156 27-67 (251)
196 3uie_A Adenylyl-sulfate kinase 97.1 0.00037 1.2E-08 60.5 4.6 35 123-157 25-62 (200)
197 2xb4_A Adenylate kinase; ATP-b 97.1 0.00033 1.1E-08 61.9 4.4 30 125-154 2-31 (223)
198 2ga8_A Hypothetical 39.9 kDa p 97.1 0.0002 6.7E-09 67.6 3.0 30 124-153 25-54 (359)
199 1cke_A CK, MSSA, protein (cyti 97.1 0.00038 1.3E-08 61.4 4.7 30 124-153 6-35 (227)
200 2v54_A DTMP kinase, thymidylat 97.1 0.00041 1.4E-08 60.0 4.8 34 123-156 4-38 (204)
201 2jaq_A Deoxyguanosine kinase; 97.1 0.00036 1.2E-08 60.3 4.2 29 125-153 2-30 (205)
202 3bh0_A DNAB-like replicative h 97.1 0.0082 2.8E-07 55.9 13.7 37 120-156 65-104 (315)
203 4gp7_A Metallophosphoesterase; 97.1 0.0014 4.7E-08 55.3 7.7 20 123-142 9-28 (171)
204 2if2_A Dephospho-COA kinase; a 97.1 0.00027 9.1E-09 61.4 3.1 30 125-155 3-32 (204)
205 2z0h_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 59.1 4.7 31 126-156 3-36 (197)
206 3r20_A Cytidylate kinase; stru 97.0 0.0005 1.7E-08 61.2 4.7 31 123-153 9-39 (233)
207 2grj_A Dephospho-COA kinase; T 97.0 0.00034 1.2E-08 60.5 3.5 32 124-155 13-44 (192)
208 1nks_A Adenylate kinase; therm 97.0 0.00026 8.8E-09 60.6 2.6 24 125-148 3-26 (194)
209 3cmw_A Protein RECA, recombina 97.0 0.0019 6.7E-08 72.4 10.1 80 120-199 1428-1526(1706)
210 3kl4_A SRP54, signal recogniti 97.0 0.0083 2.8E-07 58.3 13.4 73 122-194 96-191 (433)
211 3a8t_A Adenylate isopentenyltr 97.0 0.00039 1.3E-08 65.2 3.8 36 123-158 40-75 (339)
212 3nwj_A ATSK2; P loop, shikimat 97.0 0.00056 1.9E-08 61.7 4.7 32 124-155 49-80 (250)
213 1m7g_A Adenylylsulfate kinase; 97.0 0.0017 5.7E-08 56.8 7.6 36 123-158 25-64 (211)
214 2bbw_A Adenylate kinase 4, AK4 97.0 0.00052 1.8E-08 61.6 4.4 30 123-152 27-56 (246)
215 3foz_A TRNA delta(2)-isopenten 97.0 0.00053 1.8E-08 63.4 4.4 37 123-159 10-46 (316)
216 1uf9_A TT1252 protein; P-loop, 97.0 0.00043 1.5E-08 59.8 3.5 31 123-154 8-38 (203)
217 3ake_A Cytidylate kinase; CMP 96.9 0.00062 2.1E-08 59.0 4.4 31 125-155 4-34 (208)
218 1jjv_A Dephospho-COA kinase; P 96.9 0.00051 1.8E-08 59.7 3.8 28 125-153 4-31 (206)
219 4e22_A Cytidylate kinase; P-lo 96.9 0.00084 2.9E-08 60.6 5.3 31 123-153 27-57 (252)
220 2plr_A DTMP kinase, probable t 96.9 0.00062 2.1E-08 59.1 4.0 28 123-150 4-31 (213)
221 2wwf_A Thymidilate kinase, put 96.9 0.00028 9.7E-09 61.5 1.6 28 123-150 10-37 (212)
222 1uj2_A Uridine-cytidine kinase 96.8 0.0011 3.9E-08 59.6 5.4 39 123-161 22-68 (252)
223 2qor_A Guanylate kinase; phosp 96.8 0.00081 2.8E-08 58.4 4.2 28 121-148 10-37 (204)
224 2ewv_A Twitching motility prot 96.8 0.00096 3.3E-08 63.8 5.0 71 122-192 135-219 (372)
225 3exa_A TRNA delta(2)-isopenten 96.8 0.00078 2.7E-08 62.4 4.1 37 124-160 4-40 (322)
226 1nn5_A Similar to deoxythymidy 96.8 0.00037 1.3E-08 60.8 1.8 27 123-149 9-35 (215)
227 3bgw_A DNAB-like replicative h 96.8 0.016 5.5E-07 56.6 13.5 38 119-156 193-233 (444)
228 1vht_A Dephospho-COA kinase; s 96.8 0.0013 4.3E-08 57.7 4.9 31 123-154 4-34 (218)
229 2qt1_A Nicotinamide riboside k 96.7 0.00063 2.1E-08 59.2 2.9 32 122-153 20-52 (207)
230 1q3t_A Cytidylate kinase; nucl 96.7 0.0013 4.5E-08 58.5 5.0 31 123-153 16-46 (236)
231 2yvu_A Probable adenylyl-sulfa 96.7 0.0013 4.4E-08 56.1 4.7 34 123-156 13-49 (186)
232 1ex7_A Guanylate kinase; subst 96.7 0.0011 3.9E-08 56.8 4.2 26 124-149 2-27 (186)
233 2f6r_A COA synthase, bifunctio 96.7 0.00086 2.9E-08 61.6 3.6 31 123-154 75-105 (281)
234 2h92_A Cytidylate kinase; ross 96.7 0.0014 4.7E-08 57.5 4.7 31 124-154 4-34 (219)
235 3d3q_A TRNA delta(2)-isopenten 96.7 0.00096 3.3E-08 62.7 3.7 34 124-157 8-41 (340)
236 1ltq_A Polynucleotide kinase; 96.7 0.0007 2.4E-08 62.5 2.7 30 124-153 3-33 (301)
237 3zvl_A Bifunctional polynucleo 96.7 0.0016 5.5E-08 63.3 5.3 31 123-153 258-288 (416)
238 2qmh_A HPR kinase/phosphorylas 96.6 0.00086 2.9E-08 57.9 2.9 35 123-158 34-68 (205)
239 2j41_A Guanylate kinase; GMP, 96.6 0.0013 4.3E-08 56.9 3.9 26 122-147 5-30 (207)
240 1kgd_A CASK, peripheral plasma 96.6 0.0013 4.6E-08 55.8 4.0 25 124-148 6-30 (180)
241 3eph_A TRNA isopentenyltransfe 96.6 0.0012 4.2E-08 63.2 4.1 34 123-156 2-35 (409)
242 1q57_A DNA primase/helicase; d 96.6 0.02 6.7E-07 56.9 13.0 37 120-156 239-279 (503)
243 3tau_A Guanylate kinase, GMP k 96.6 0.0013 4.4E-08 57.4 3.8 26 123-148 8-33 (208)
244 4a1f_A DNAB helicase, replicat 96.6 0.034 1.2E-06 52.1 13.7 37 120-156 43-82 (338)
245 2bdt_A BH3686; alpha-beta prot 96.6 0.0017 5.7E-08 55.5 4.3 25 125-149 4-28 (189)
246 2px0_A Flagellar biosynthesis 96.5 0.013 4.3E-07 54.1 10.4 36 122-157 104-143 (296)
247 4b3f_X DNA-binding protein smu 96.5 0.013 4.4E-07 60.2 11.2 51 91-157 189-242 (646)
248 2gxq_A Heat resistant RNA depe 96.5 0.018 6.2E-07 49.4 10.5 17 124-140 39-55 (207)
249 3tr0_A Guanylate kinase, GMP k 96.5 0.0018 6.3E-08 55.9 4.0 26 123-148 7-32 (205)
250 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0015 5E-08 61.5 3.5 71 123-193 171-251 (330)
251 3fdi_A Uncharacterized protein 96.4 0.0022 7.4E-08 55.8 4.0 30 124-153 7-36 (201)
252 3asz_A Uridine kinase; cytidin 96.4 0.0019 6.5E-08 56.2 3.6 26 123-148 6-31 (211)
253 1x6v_B Bifunctional 3'-phospho 96.4 0.0068 2.3E-07 61.6 8.1 36 123-158 52-90 (630)
254 1lvg_A Guanylate kinase, GMP k 96.4 0.0018 6.3E-08 56.0 3.4 26 123-148 4-29 (198)
255 3b6e_A Interferon-induced heli 96.4 0.015 5.3E-07 50.1 9.4 23 124-146 49-71 (216)
256 3a00_A Guanylate kinase, GMP k 96.4 0.0021 7.2E-08 54.9 3.6 25 124-148 2-26 (186)
257 3llm_A ATP-dependent RNA helic 96.3 0.022 7.4E-07 50.4 10.2 22 123-144 76-97 (235)
258 2yhs_A FTSY, cell division pro 96.3 0.092 3.2E-06 51.7 15.4 27 121-147 291-317 (503)
259 1rz3_A Hypothetical protein rb 96.3 0.0042 1.5E-07 53.7 5.4 36 123-158 22-60 (201)
260 3c8u_A Fructokinase; YP_612366 96.3 0.0023 7.8E-08 55.7 3.6 26 123-148 22-47 (208)
261 3ney_A 55 kDa erythrocyte memb 96.3 0.0038 1.3E-07 54.0 4.7 26 123-148 19-44 (197)
262 2axn_A 6-phosphofructo-2-kinas 96.2 0.0079 2.7E-07 60.1 7.5 36 123-158 35-73 (520)
263 3gmt_A Adenylate kinase; ssgci 96.2 0.003 1E-07 56.0 3.8 30 125-154 10-39 (230)
264 2xau_A PRE-mRNA-splicing facto 96.2 0.015 5.1E-07 61.0 9.8 60 84-146 71-132 (773)
265 1hv8_A Putative ATP-dependent 96.2 0.017 5.7E-07 54.2 9.3 59 85-145 6-66 (367)
266 1tf7_A KAIC; homohexamer, hexa 96.2 0.032 1.1E-06 55.8 11.6 24 120-143 36-59 (525)
267 3e70_C DPA, signal recognition 96.2 0.018 6.2E-07 53.9 9.2 26 122-147 128-153 (328)
268 1z6g_A Guanylate kinase; struc 96.1 0.0032 1.1E-07 55.4 3.6 26 122-147 22-47 (218)
269 3thx_B DNA mismatch repair pro 96.1 0.016 5.5E-07 61.6 9.5 23 123-145 673-695 (918)
270 1htw_A HI0065; nucleotide-bind 96.1 0.004 1.4E-07 51.8 4.0 26 122-147 32-57 (158)
271 1znw_A Guanylate kinase, GMP k 96.1 0.0036 1.2E-07 54.4 3.8 26 123-148 20-45 (207)
272 2xxa_A Signal recognition part 96.1 0.02 7E-07 55.7 9.4 72 122-193 99-194 (433)
273 1p9r_A General secretion pathw 96.1 0.009 3.1E-07 57.9 6.8 50 84-148 143-192 (418)
274 1qde_A EIF4A, translation init 96.1 0.043 1.5E-06 47.7 10.8 53 84-139 13-67 (224)
275 2oap_1 GSPE-2, type II secreti 96.0 0.0034 1.2E-07 62.5 3.6 70 123-192 260-343 (511)
276 1ls1_A Signal recognition part 96.0 0.025 8.6E-07 52.1 9.2 73 122-194 97-192 (295)
277 2j37_W Signal recognition part 96.0 0.018 6.2E-07 57.0 8.7 35 122-156 100-137 (504)
278 4eaq_A DTMP kinase, thymidylat 96.0 0.005 1.7E-07 54.6 4.2 31 123-153 26-58 (229)
279 1s96_A Guanylate kinase, GMP k 96.0 0.0045 1.5E-07 54.5 3.8 28 121-148 14-41 (219)
280 1t6n_A Probable ATP-dependent 96.0 0.1 3.4E-06 45.2 12.6 58 85-145 14-73 (220)
281 3b9q_A Chloroplast SRP recepto 96.0 0.012 4E-07 54.5 6.7 27 121-147 98-124 (302)
282 1zu4_A FTSY; GTPase, signal re 95.9 0.03 1E-06 52.2 9.5 36 121-156 103-141 (320)
283 1tf7_A KAIC; homohexamer, hexa 95.9 0.032 1.1E-06 55.7 10.4 77 120-196 278-385 (525)
284 1c9k_A COBU, adenosylcobinamid 95.9 0.0042 1.5E-07 52.8 3.3 32 126-158 2-33 (180)
285 1j8m_F SRP54, signal recogniti 95.9 0.021 7.1E-07 52.7 8.3 72 123-194 98-192 (297)
286 1w4r_A Thymidine kinase; type 95.9 0.0064 2.2E-07 52.2 4.4 33 124-156 21-56 (195)
287 1gtv_A TMK, thymidylate kinase 95.9 0.0019 6.6E-08 56.1 1.1 24 125-148 2-25 (214)
288 3hdt_A Putative kinase; struct 95.9 0.0053 1.8E-07 54.2 3.9 30 124-153 15-44 (223)
289 2jeo_A Uridine-cytidine kinase 95.9 0.0055 1.9E-07 54.7 4.0 28 123-150 25-52 (245)
290 3thx_A DNA mismatch repair pro 95.8 0.03 1E-06 59.7 10.0 22 124-145 663-684 (934)
291 2v9p_A Replication protein E1; 95.8 0.0057 1.9E-07 56.7 3.9 29 120-148 123-151 (305)
292 3tqf_A HPR(Ser) kinase; transf 95.8 0.0074 2.5E-07 50.8 4.2 29 123-152 16-44 (181)
293 1sky_E F1-ATPase, F1-ATP synth 95.8 0.027 9.1E-07 55.1 8.7 23 124-146 152-174 (473)
294 1a7j_A Phosphoribulokinase; tr 95.8 0.0044 1.5E-07 57.1 3.1 37 124-160 6-45 (290)
295 2ffh_A Protein (FFH); SRP54, s 95.8 0.069 2.4E-06 51.7 11.5 35 122-156 97-134 (425)
296 3p32_A Probable GTPase RV1496/ 95.6 0.041 1.4E-06 52.0 9.2 33 123-155 79-114 (355)
297 2i3b_A HCR-ntpase, human cance 95.6 0.007 2.4E-07 52.0 3.4 23 125-147 3-25 (189)
298 2og2_A Putative signal recogni 95.6 0.018 6E-07 54.6 6.4 27 121-147 155-181 (359)
299 1bif_A 6-phosphofructo-2-kinas 95.6 0.015 5E-07 57.4 6.1 26 123-148 39-64 (469)
300 3lnc_A Guanylate kinase, GMP k 95.5 0.005 1.7E-07 54.4 2.4 25 123-147 27-52 (231)
301 3tqc_A Pantothenate kinase; bi 95.5 0.023 8E-07 52.9 6.9 26 123-148 92-117 (321)
302 4i1u_A Dephospho-COA kinase; s 95.5 0.0088 3E-07 52.2 3.6 31 124-155 10-40 (210)
303 1sq5_A Pantothenate kinase; P- 95.5 0.0083 2.8E-07 55.7 3.6 26 123-148 80-105 (308)
304 3aez_A Pantothenate kinase; tr 95.5 0.0095 3.3E-07 55.4 4.0 27 121-147 88-114 (312)
305 1cr0_A DNA primase/helicase; R 95.4 0.0091 3.1E-07 54.9 3.8 36 120-155 32-71 (296)
306 1m8p_A Sulfate adenylyltransfe 95.4 0.0086 2.9E-07 60.5 3.9 36 123-158 396-435 (573)
307 1odf_A YGR205W, hypothetical 3 95.4 0.0097 3.3E-07 54.7 3.9 26 123-148 31-56 (290)
308 2ocp_A DGK, deoxyguanosine kin 95.4 0.012 4E-07 52.4 4.3 26 123-148 2-27 (241)
309 1rj9_A FTSY, signal recognitio 95.4 0.0097 3.3E-07 55.1 3.9 25 123-147 102-126 (304)
310 3tif_A Uncharacterized ABC tra 95.4 0.0072 2.5E-07 53.8 2.9 26 122-147 30-55 (235)
311 2pl3_A Probable ATP-dependent 95.4 0.049 1.7E-06 47.9 8.4 54 84-140 24-79 (236)
312 3fe2_A Probable ATP-dependent 95.3 0.042 1.4E-06 48.6 7.6 57 82-141 26-84 (242)
313 2cbz_A Multidrug resistance-as 95.3 0.0084 2.9E-07 53.4 2.9 25 122-146 30-54 (237)
314 1p5z_B DCK, deoxycytidine kina 95.3 0.0053 1.8E-07 55.5 1.5 26 123-148 24-49 (263)
315 1wb9_A DNA mismatch repair pro 95.3 0.085 2.9E-06 55.3 10.9 22 124-145 608-629 (800)
316 2qm8_A GTPase/ATPase; G protei 95.3 0.047 1.6E-06 51.2 8.1 25 123-147 55-79 (337)
317 3ice_A Transcription terminati 95.2 0.035 1.2E-06 52.8 7.1 26 122-147 173-198 (422)
318 2va8_A SSO2462, SKI2-type heli 95.2 0.072 2.5E-06 55.2 10.2 57 84-142 7-65 (715)
319 2pcj_A ABC transporter, lipopr 95.2 0.0073 2.5E-07 53.3 2.2 25 123-147 30-54 (224)
320 2onk_A Molybdate/tungstate ABC 95.2 0.011 3.8E-07 52.8 3.3 24 124-147 25-48 (240)
321 1xjc_A MOBB protein homolog; s 95.2 0.014 4.7E-07 49.1 3.7 32 124-155 5-39 (169)
322 1b0u_A Histidine permease; ABC 95.1 0.01 3.4E-07 53.8 3.0 27 122-148 31-57 (262)
323 3iuy_A Probable ATP-dependent 95.1 0.054 1.8E-06 47.3 7.6 57 82-141 16-75 (228)
324 2ged_A SR-beta, signal recogni 95.1 0.026 8.9E-07 47.7 5.3 24 123-146 48-71 (193)
325 1mv5_A LMRA, multidrug resista 95.0 0.011 3.6E-07 52.9 2.9 25 122-146 27-51 (243)
326 3b85_A Phosphate starvation-in 95.0 0.0097 3.3E-07 51.9 2.5 23 124-146 23-45 (208)
327 3fvq_A Fe(3+) IONS import ATP- 95.0 0.012 4E-07 55.8 3.1 24 123-146 30-53 (359)
328 1np6_A Molybdopterin-guanine d 95.0 0.014 4.9E-07 49.3 3.4 24 124-147 7-30 (174)
329 3kta_A Chromosome segregation 95.0 0.016 5.5E-07 48.8 3.8 25 124-148 27-51 (182)
330 2zu0_C Probable ATP-dependent 95.0 0.014 4.7E-07 53.0 3.5 25 122-146 45-69 (267)
331 3cr8_A Sulfate adenylyltranfer 95.0 0.024 8.1E-07 56.9 5.5 38 122-159 368-409 (552)
332 3pey_A ATP-dependent RNA helic 95.0 0.024 8.3E-07 53.6 5.4 58 85-143 5-64 (395)
333 1sgw_A Putative ABC transporte 94.9 0.0099 3.4E-07 52.1 2.3 25 123-147 35-59 (214)
334 2olj_A Amino acid ABC transpor 94.9 0.012 4.2E-07 53.3 3.0 26 122-147 49-74 (263)
335 2ghi_A Transport protein; mult 94.9 0.012 4.1E-07 53.2 2.9 26 122-147 45-70 (260)
336 2ixe_A Antigen peptide transpo 94.9 0.012 4.2E-07 53.4 2.9 26 122-147 44-69 (271)
337 2pze_A Cystic fibrosis transme 94.8 0.011 3.8E-07 52.3 2.4 25 123-147 34-58 (229)
338 2d2e_A SUFC protein; ABC-ATPas 94.8 0.013 4.5E-07 52.6 2.9 24 123-146 29-52 (250)
339 3rlf_A Maltose/maltodextrin im 94.8 0.015 5.2E-07 55.4 3.5 24 123-146 29-52 (381)
340 2it1_A 362AA long hypothetical 94.8 0.015 5.2E-07 55.1 3.5 24 123-146 29-52 (362)
341 1g6h_A High-affinity branched- 94.8 0.011 3.8E-07 53.3 2.4 25 123-147 33-57 (257)
342 3gfo_A Cobalt import ATP-bindi 94.8 0.011 3.8E-07 53.9 2.4 25 123-147 34-58 (275)
343 3fmp_B ATP-dependent RNA helic 94.8 0.067 2.3E-06 52.5 8.3 56 84-140 91-148 (479)
344 1vpl_A ABC transporter, ATP-bi 94.8 0.014 4.6E-07 52.7 3.0 26 122-147 40-65 (256)
345 2yyz_A Sugar ABC transporter, 94.8 0.015 5.2E-07 55.0 3.4 24 123-146 29-52 (359)
346 2ff7_A Alpha-hemolysin translo 94.8 0.011 3.9E-07 52.9 2.4 25 123-147 35-59 (247)
347 3tbk_A RIG-I helicase domain; 94.8 0.28 9.5E-06 48.6 12.9 22 124-145 20-41 (555)
348 2f9l_A RAB11B, member RAS onco 94.8 0.016 5.5E-07 49.6 3.3 23 124-146 6-28 (199)
349 3tmk_A Thymidylate kinase; pho 94.8 0.031 1.1E-06 49.0 5.1 29 123-151 5-33 (216)
350 3ly5_A ATP-dependent RNA helic 94.8 0.15 5.2E-06 45.7 9.9 18 124-141 92-109 (262)
351 1ji0_A ABC transporter; ATP bi 94.8 0.012 4E-07 52.6 2.4 25 123-147 32-56 (240)
352 2gk6_A Regulator of nonsense t 94.8 0.027 9.3E-07 57.5 5.4 23 124-146 196-218 (624)
353 3v9p_A DTMP kinase, thymidylat 94.8 0.027 9.3E-07 49.7 4.7 25 123-147 25-49 (227)
354 1v43_A Sugar-binding transport 94.8 0.016 5.6E-07 55.1 3.5 24 123-146 37-60 (372)
355 1oix_A RAS-related protein RAB 94.8 0.015 5.2E-07 49.5 3.0 23 125-147 31-53 (191)
356 4g1u_C Hemin import ATP-bindin 94.7 0.012 4.2E-07 53.3 2.4 25 123-147 37-61 (266)
357 2yz2_A Putative ABC transporte 94.7 0.014 4.9E-07 52.9 2.9 26 122-147 32-57 (266)
358 3sop_A Neuronal-specific septi 94.7 0.015 5.1E-07 52.9 3.0 23 125-147 4-26 (270)
359 4edh_A DTMP kinase, thymidylat 94.7 0.02 6.9E-07 50.0 3.7 31 124-154 7-40 (213)
360 2zj8_A DNA helicase, putative 94.7 0.068 2.3E-06 55.5 8.4 19 123-141 39-57 (720)
361 2qi9_C Vitamin B12 import ATP- 94.7 0.013 4.3E-07 52.7 2.4 26 123-148 26-51 (249)
362 3k53_A Ferrous iron transport 94.7 0.03 1E-06 50.6 5.1 23 124-146 4-26 (271)
363 1z47_A CYSA, putative ABC-tran 94.7 0.015 5E-07 55.1 2.9 24 123-146 41-64 (355)
364 3d31_A Sulfate/molybdate ABC t 94.7 0.013 4.6E-07 55.2 2.6 24 123-146 26-49 (348)
365 3lxw_A GTPase IMAP family memb 94.7 0.12 4.1E-06 46.0 8.8 23 123-145 21-43 (247)
366 1g8f_A Sulfate adenylyltransfe 94.7 0.017 5.8E-07 57.3 3.4 26 124-149 396-421 (511)
367 2orv_A Thymidine kinase; TP4A 94.6 0.2 6.7E-06 44.1 9.8 32 124-155 20-54 (234)
368 2p67_A LAO/AO transport system 94.6 0.11 3.9E-06 48.6 9.0 25 123-147 56-80 (341)
369 2v3c_C SRP54, signal recogniti 94.6 0.019 6.5E-07 55.8 3.6 35 123-157 99-136 (432)
370 2dyk_A GTP-binding protein; GT 94.6 0.021 7.3E-07 46.5 3.4 22 125-146 3-24 (161)
371 2ihy_A ABC transporter, ATP-bi 94.6 0.014 4.8E-07 53.3 2.4 25 123-147 47-71 (279)
372 1nrj_B SR-beta, signal recogni 94.6 0.024 8.2E-07 49.1 3.9 25 123-147 12-36 (218)
373 2nq2_C Hypothetical ABC transp 94.5 0.014 4.9E-07 52.4 2.4 25 123-147 31-55 (253)
374 1g29_1 MALK, maltose transport 94.5 0.017 5.7E-07 55.1 2.9 24 123-146 29-52 (372)
375 2fwr_A DNA repair protein RAD2 94.5 0.036 1.2E-06 54.3 5.5 34 124-157 109-142 (472)
376 1lw7_A Transcriptional regulat 94.5 0.021 7.1E-07 54.3 3.6 28 123-150 170-197 (365)
377 2gza_A Type IV secretion syste 94.5 0.018 6.2E-07 54.7 3.1 26 123-148 175-200 (361)
378 2f1r_A Molybdopterin-guanine d 94.5 0.012 4.2E-07 49.5 1.7 24 124-147 3-26 (171)
379 1upt_A ARL1, ADP-ribosylation 94.4 0.03 1E-06 46.1 3.9 24 122-145 6-29 (171)
380 3gd7_A Fusion complex of cysti 94.4 0.02 6.9E-07 54.9 3.1 24 122-145 46-69 (390)
381 3lv8_A DTMP kinase, thymidylat 94.4 0.025 8.7E-07 50.2 3.6 25 123-147 27-51 (236)
382 1z2a_A RAS-related protein RAB 94.4 0.024 8.3E-07 46.4 3.2 23 124-146 6-28 (168)
383 2zej_A Dardarin, leucine-rich 94.3 0.019 6.6E-07 48.4 2.6 21 125-145 4-24 (184)
384 1oxx_K GLCV, glucose, ABC tran 94.3 0.014 4.9E-07 55.1 1.9 24 123-146 31-54 (353)
385 3ld9_A DTMP kinase, thymidylat 94.3 0.031 1.1E-06 49.2 3.9 27 123-149 21-47 (223)
386 2wji_A Ferrous iron transport 94.3 0.024 8.2E-07 46.8 3.1 22 124-145 4-25 (165)
387 1kao_A RAP2A; GTP-binding prot 94.3 0.027 9.1E-07 46.0 3.3 23 124-146 4-26 (167)
388 3dkp_A Probable ATP-dependent 94.2 0.11 3.7E-06 45.9 7.4 17 124-140 67-83 (245)
389 1g41_A Heat shock protein HSLU 94.2 0.0074 2.5E-07 58.8 -0.3 57 206-266 128-188 (444)
390 2wsm_A Hydrogenase expression/ 94.2 0.036 1.2E-06 48.1 4.1 26 123-148 30-55 (221)
391 1u8z_A RAS-related protein RAL 94.2 0.027 9.1E-07 46.1 3.1 23 124-146 5-27 (168)
392 3oiy_A Reverse gyrase helicase 94.2 0.067 2.3E-06 51.3 6.4 20 124-143 37-56 (414)
393 2bbs_A Cystic fibrosis transme 94.2 0.021 7.1E-07 52.5 2.6 26 122-147 63-88 (290)
394 2pjz_A Hypothetical protein ST 94.2 0.021 7.2E-07 51.7 2.6 25 123-147 30-54 (263)
395 2lkc_A Translation initiation 94.1 0.044 1.5E-06 45.5 4.4 24 122-145 7-30 (178)
396 2ce2_X GTPase HRAS; signaling 94.1 0.026 8.9E-07 45.9 2.9 23 124-146 4-26 (166)
397 1ko7_A HPR kinase/phosphatase; 94.1 0.028 9.6E-07 52.0 3.3 29 123-152 144-172 (314)
398 1ek0_A Protein (GTP-binding pr 94.1 0.031 1.1E-06 45.8 3.4 23 124-146 4-26 (170)
399 2nzj_A GTP-binding protein REM 94.1 0.028 9.6E-07 46.4 3.1 22 124-145 5-26 (175)
400 1z0j_A RAB-22, RAS-related pro 94.1 0.031 1E-06 45.9 3.3 23 124-146 7-29 (170)
401 2wjy_A Regulator of nonsense t 94.0 0.047 1.6E-06 57.3 5.4 23 124-146 372-394 (800)
402 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.033 1.1E-06 46.2 3.4 23 124-146 8-30 (177)
403 1wp9_A ATP-dependent RNA helic 94.0 0.17 5.8E-06 48.9 9.1 32 125-156 25-60 (494)
404 3iby_A Ferrous iron transport 94.0 0.059 2E-06 48.4 5.3 22 125-146 3-24 (256)
405 1z08_A RAS-related protein RAB 94.0 0.032 1.1E-06 45.8 3.3 23 124-146 7-29 (170)
406 1ky3_A GTP-binding protein YPT 94.0 0.033 1.1E-06 46.3 3.3 24 123-146 8-31 (182)
407 3nh6_A ATP-binding cassette SU 94.0 0.02 6.8E-07 53.0 2.0 27 121-147 78-104 (306)
408 3tui_C Methionine import ATP-b 93.9 0.032 1.1E-06 52.9 3.5 25 122-146 53-77 (366)
409 1g16_A RAS-related protein SEC 93.9 0.031 1.1E-06 45.9 2.9 22 124-145 4-25 (170)
410 4tmk_A Protein (thymidylate ki 93.9 0.038 1.3E-06 48.3 3.6 24 124-147 4-27 (213)
411 1c1y_A RAS-related protein RAP 93.9 0.035 1.2E-06 45.4 3.2 23 124-146 4-26 (167)
412 1r2q_A RAS-related protein RAB 93.8 0.035 1.2E-06 45.5 3.2 22 124-145 7-28 (170)
413 1r8s_A ADP-ribosylation factor 93.8 0.036 1.2E-06 45.3 3.2 22 125-146 2-23 (164)
414 3q85_A GTP-binding protein REM 93.8 0.034 1.1E-06 45.7 3.1 21 125-145 4-24 (169)
415 3a1s_A Iron(II) transport prot 93.8 0.076 2.6E-06 47.7 5.6 22 124-145 6-27 (258)
416 2wjg_A FEOB, ferrous iron tran 93.8 0.033 1.1E-06 46.8 3.1 22 124-145 8-29 (188)
417 2hf9_A Probable hydrogenase ni 93.8 0.07 2.4E-06 46.4 5.2 25 123-147 38-62 (226)
418 1f2t_A RAD50 ABC-ATPase; DNA d 93.8 0.041 1.4E-06 45.0 3.5 24 124-147 24-47 (149)
419 2npi_A Protein CLP1; CLP1-PCF1 93.8 0.035 1.2E-06 54.5 3.5 24 123-146 138-161 (460)
420 2erx_A GTP-binding protein DI- 93.8 0.035 1.2E-06 45.5 3.1 22 124-145 4-25 (172)
421 2gj8_A MNME, tRNA modification 93.7 0.035 1.2E-06 46.3 3.0 23 124-146 5-27 (172)
422 3bc1_A RAS-related protein RAB 93.7 0.037 1.3E-06 46.5 3.2 22 124-145 12-33 (195)
423 1w36_D RECD, exodeoxyribonucle 93.7 0.035 1.2E-06 56.5 3.6 23 124-146 165-187 (608)
424 3eiq_A Eukaryotic initiation f 93.7 0.12 4.2E-06 49.2 7.3 56 84-142 39-96 (414)
425 2vp4_A Deoxynucleoside kinase; 93.7 0.024 8.1E-07 50.0 1.9 24 123-146 20-43 (230)
426 3q72_A GTP-binding protein RAD 93.6 0.032 1.1E-06 45.7 2.6 21 125-145 4-24 (166)
427 3b1v_A Ferrous iron uptake tra 93.6 0.077 2.7E-06 48.1 5.4 22 124-145 4-25 (272)
428 2gks_A Bifunctional SAT/APS ki 93.6 0.045 1.5E-06 54.9 4.1 36 123-158 372-410 (546)
429 2hxs_A RAB-26, RAS-related pro 93.6 0.036 1.2E-06 46.0 2.9 22 124-145 7-28 (178)
430 1z0f_A RAB14, member RAS oncog 93.6 0.041 1.4E-06 45.5 3.2 23 124-146 16-38 (179)
431 2oil_A CATX-8, RAS-related pro 93.6 0.041 1.4E-06 46.5 3.3 23 124-146 26-48 (193)
432 1knx_A Probable HPR(Ser) kinas 93.6 0.045 1.5E-06 50.6 3.7 30 123-153 147-176 (312)
433 3con_A GTPase NRAS; structural 93.6 0.041 1.4E-06 46.3 3.2 23 124-146 22-44 (190)
434 2y8e_A RAB-protein 6, GH09086P 93.6 0.038 1.3E-06 45.8 2.9 22 124-145 15-36 (179)
435 1m7b_A RND3/RHOE small GTP-bin 93.5 0.038 1.3E-06 46.5 2.9 23 124-146 8-30 (184)
436 4dsu_A GTPase KRAS, isoform 2B 93.5 0.043 1.5E-06 46.0 3.3 23 124-146 5-27 (189)
437 2fn4_A P23, RAS-related protei 93.5 0.039 1.3E-06 45.8 3.0 23 124-146 10-32 (181)
438 2efe_B Small GTP-binding prote 93.5 0.044 1.5E-06 45.6 3.3 23 124-146 13-35 (181)
439 4ag6_A VIRB4 ATPase, type IV s 93.5 0.074 2.5E-06 50.9 5.3 34 123-156 35-71 (392)
440 3iev_A GTP-binding protein ERA 93.5 0.097 3.3E-06 48.3 5.9 22 124-145 11-32 (308)
441 2dpy_A FLII, flagellum-specifi 93.5 0.066 2.3E-06 52.1 4.9 28 123-150 157-184 (438)
442 2a9k_A RAS-related protein RAL 93.5 0.044 1.5E-06 45.7 3.2 23 124-146 19-41 (187)
443 3i8s_A Ferrous iron transport 93.5 0.11 3.9E-06 47.0 6.2 22 124-145 4-25 (274)
444 3clv_A RAB5 protein, putative; 93.4 0.054 1.8E-06 45.8 3.8 24 123-146 7-30 (208)
445 3tw8_B RAS-related protein RAB 93.4 0.041 1.4E-06 45.6 2.9 22 124-145 10-31 (181)
446 2xzl_A ATP-dependent helicase 93.4 0.066 2.3E-06 56.3 5.0 22 124-145 376-397 (802)
447 2bme_A RAB4A, RAS-related prot 93.4 0.042 1.4E-06 46.0 2.9 23 124-146 11-33 (186)
448 1pui_A ENGB, probable GTP-bind 93.4 0.026 8.9E-07 48.5 1.7 23 123-145 26-48 (210)
449 1ewq_A DNA mismatch repair pro 93.4 0.1 3.5E-06 54.4 6.4 22 124-145 577-598 (765)
450 2o8b_B DNA mismatch repair pro 93.3 0.46 1.6E-05 51.2 11.5 21 124-144 790-810 (1022)
451 3ihw_A Centg3; RAS, centaurin, 93.3 0.048 1.6E-06 46.0 3.3 23 124-146 21-43 (184)
452 4f4c_A Multidrug resistance pr 93.3 0.26 8.9E-06 54.7 9.9 28 120-147 441-468 (1321)
453 3kkq_A RAS-related protein M-R 93.3 0.048 1.6E-06 45.6 3.2 23 124-146 19-41 (183)
454 1m2o_B GTP-binding protein SAR 93.3 0.046 1.6E-06 46.3 3.2 23 123-145 23-45 (190)
455 4hlc_A DTMP kinase, thymidylat 93.3 0.081 2.8E-06 45.8 4.8 31 124-154 3-35 (205)
456 1oyw_A RECQ helicase, ATP-depe 93.3 0.081 2.8E-06 52.8 5.4 21 124-144 41-61 (523)
457 2g6b_A RAS-related protein RAB 93.3 0.049 1.7E-06 45.2 3.2 24 123-146 10-33 (180)
458 2v6i_A RNA helicase; membrane, 93.3 0.11 3.7E-06 50.4 6.2 17 124-140 3-19 (431)
459 1mh1_A RAC1; GTP-binding, GTPa 93.3 0.049 1.7E-06 45.4 3.2 22 124-145 6-27 (186)
460 2gf9_A RAS-related protein RAB 93.2 0.05 1.7E-06 45.9 3.2 23 124-146 23-45 (189)
461 3c5c_A RAS-like protein 12; GD 93.2 0.051 1.7E-06 45.9 3.3 23 124-146 22-44 (187)
462 3h1t_A Type I site-specific re 93.2 0.15 5.1E-06 51.5 7.3 23 124-146 199-221 (590)
463 1svi_A GTP-binding protein YSX 93.2 0.049 1.7E-06 46.0 3.2 23 123-145 23-45 (195)
464 1yrb_A ATP(GTP)binding protein 93.2 0.1 3.5E-06 46.5 5.4 34 123-156 14-49 (262)
465 1nij_A Hypothetical protein YJ 93.2 0.1 3.5E-06 48.4 5.6 24 124-147 5-28 (318)
466 2atv_A RERG, RAS-like estrogen 93.2 0.061 2.1E-06 45.7 3.7 24 123-146 28-51 (196)
467 2obl_A ESCN; ATPase, hydrolase 93.2 0.067 2.3E-06 50.4 4.3 28 123-150 71-98 (347)
468 3bwd_D RAC-like GTP-binding pr 93.1 0.064 2.2E-06 44.6 3.8 24 123-146 8-31 (182)
469 2db3_A ATP-dependent RNA helic 93.1 0.22 7.4E-06 48.3 8.0 55 82-139 53-109 (434)
470 3t1o_A Gliding protein MGLA; G 93.1 0.053 1.8E-06 45.7 3.2 24 124-147 15-38 (198)
471 3tkl_A RAS-related protein RAB 93.1 0.054 1.9E-06 45.7 3.2 23 124-146 17-39 (196)
472 2p6r_A Afuhel308 helicase; pro 93.0 0.1 3.6E-06 53.9 5.9 19 123-141 40-58 (702)
473 2bov_A RAla, RAS-related prote 93.0 0.055 1.9E-06 46.1 3.2 23 124-146 15-37 (206)
474 2iwr_A Centaurin gamma 1; ANK 93.0 0.042 1.4E-06 45.7 2.4 23 124-146 8-30 (178)
475 2cxx_A Probable GTP-binding pr 93.0 0.044 1.5E-06 46.0 2.6 21 125-145 3-23 (190)
476 1z06_A RAS-related protein RAB 93.0 0.057 2E-06 45.5 3.3 22 124-145 21-42 (189)
477 2fg5_A RAB-22B, RAS-related pr 93.0 0.052 1.8E-06 46.0 3.0 23 124-146 24-46 (192)
478 1dek_A Deoxynucleoside monopho 93.0 0.06 2.1E-06 47.9 3.5 26 126-151 4-29 (241)
479 1zd9_A ADP-ribosylation factor 93.0 0.057 1.9E-06 45.5 3.2 23 124-146 23-45 (188)
480 2qag_B Septin-6, protein NEDD5 93.0 0.052 1.8E-06 52.5 3.2 21 126-146 45-65 (427)
481 2a5j_A RAS-related protein RAB 93.0 0.058 2E-06 45.6 3.3 23 124-146 22-44 (191)
482 3dz8_A RAS-related protein RAB 93.0 0.052 1.8E-06 45.9 2.9 24 124-147 24-47 (191)
483 3l9o_A ATP-dependent RNA helic 93.0 0.19 6.4E-06 54.8 7.9 23 123-145 199-221 (1108)
484 1vg8_A RAS-related protein RAB 93.0 0.059 2E-06 46.0 3.3 24 123-146 8-31 (207)
485 1ksh_A ARF-like protein 2; sma 92.9 0.061 2.1E-06 45.1 3.3 23 123-145 18-40 (186)
486 2rcn_A Probable GTPase ENGC; Y 92.9 0.061 2.1E-06 50.8 3.6 24 124-147 216-239 (358)
487 1gm5_A RECG; helicase, replica 92.9 0.67 2.3E-05 48.4 11.8 34 123-156 389-425 (780)
488 1x3s_A RAS-related protein RAB 92.9 0.059 2E-06 45.4 3.2 23 124-146 16-38 (195)
489 4ddu_A Reverse gyrase; topoiso 92.9 0.41 1.4E-05 52.1 10.6 20 124-143 94-113 (1104)
490 3reg_A RHO-like small GTPase; 92.9 0.06 2E-06 45.6 3.2 23 124-146 24-46 (194)
491 2p5s_A RAS and EF-hand domain 92.9 0.066 2.3E-06 45.6 3.5 24 123-146 28-51 (199)
492 3t5g_A GTP-binding protein RHE 92.9 0.055 1.9E-06 45.1 2.9 22 124-145 7-28 (181)
493 3pqc_A Probable GTP-binding pr 92.9 0.06 2.1E-06 45.3 3.2 23 124-146 24-46 (195)
494 3hjn_A DTMP kinase, thymidylat 92.8 0.12 4E-06 44.5 5.0 31 126-156 3-36 (197)
495 2gf0_A GTP-binding protein DI- 92.8 0.07 2.4E-06 45.1 3.6 23 123-145 8-30 (199)
496 1moz_A ARL1, ADP-ribosylation 92.8 0.042 1.4E-06 45.8 2.1 23 123-145 18-40 (183)
497 1zbd_A Rabphilin-3A; G protein 92.8 0.059 2E-06 45.9 3.1 23 124-146 9-31 (203)
498 1gwn_A RHO-related GTP-binding 92.7 0.058 2E-06 46.5 2.9 23 124-146 29-51 (205)
499 4b4t_J 26S protease regulatory 92.7 0.014 4.8E-07 55.9 -1.1 30 350-381 139-168 (405)
500 4a2p_A RIG-I, retinoic acid in 92.7 0.94 3.2E-05 44.8 12.3 22 124-145 23-44 (556)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-51 Score=393.23 Aligned_cols=247 Identities=32% Similarity=0.573 Sum_probs=228.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|+++|+||+|++++|++|++.+.+|+.+|++|...+ +.+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG-IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 46789999999999999999999999999999999864 78899999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
++|.|++++.++.+|..|+..+||||||||+|.+++++.... .....+.+++++..+|++.. ..+++||+|||+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrp 297 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRL 297 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCCh
Confidence 999999999999999999999999999999999998875432 33456788899999999865 5679999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.+|++++| ||+..|+|++|+.++|.+||+.++++.++..+++++.+|+.|+||||+||.++|++|++.|+++.
T Consensus 298 d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~---- 373 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER---- 373 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999999899999999999999999999999999999998762
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
...|+++||+.|++++.+.
T Consensus 374 --------~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 374 --------RIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp --------CSBCCHHHHHHHHHHHHHH
T ss_pred --------CCCcCHHHHHHHHHHHhCc
Confidence 2569999999999987554
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-50 Score=384.68 Aligned_cols=247 Identities=32% Similarity=0.563 Sum_probs=227.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|+++|+||+|++++|++|++.+.+|+.+|+.|...+ ..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG-IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 45789999999999999999999999999999999865 78899999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
++|+|++++.++.+|..|+..+||||||||+|.+++.+.... .....+.+.+++..+|++.. ..+++||+|||+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCS
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCCh
Confidence 999999999999999999999999999999999998875332 23456677899999998865 5679999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.||++++| ||+..|+|++|+.++|.+||+.++++..+..+++++.+|..|+||||+||.++|++|++.|+++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~---- 407 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER---- 407 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999999899999999999999999999999999999999762
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
...|+++||..|++++.++
T Consensus 408 --------~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 408 --------RMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp --------CSCBCHHHHHHHHHHHHHH
T ss_pred --------CCccCHHHHHHHHHHHhCC
Confidence 1569999999999988766
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-49 Score=385.18 Aligned_cols=248 Identities=33% Similarity=0.581 Sum_probs=229.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|+++|+||+|++++|++|++.+.+|+.+|+.|...+ ..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g-~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG-IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 45789999999999999999999999999999998865 78899999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCch---HHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH---EALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
++|.|++++.++.+|..|+..+||||||||+|.+++++..... ....+.+.+++..++++.. ..+|+||+|||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC--CCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999988865443 2345677889999999875 5679999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.||++++| ||+..|+|++|+.++|.+||+.++++..+..+++++.||+.|+||||+||.++|++|++.|+++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999988899999999999999999999999999999999862
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhcccch
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
...|+.+||..|+++++++.
T Consensus 407 --------~~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 407 --------QSSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp --------CSSBCHHHHHHHHHSCSSSC
T ss_pred --------CCCcCHHHHHHHHHHHhCCC
Confidence 15699999999999998873
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-48 Score=377.98 Aligned_cols=247 Identities=36% Similarity=0.619 Sum_probs=227.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|+++|+||+|++++|++|++.+.+|+.+|+.|...+ +.+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC-CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 46789999999999999999999999999999998864 78899999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
++|+|++++.++.+|..|+..+||||||||+|.++.++.... .....+.+.+++..+++... ..+++||+|||+|
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrp 358 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRP 358 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCT
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCc
Confidence 999999999999999999999999999999999998875432 33455677889999998764 5679999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.||++++| ||+..|+|++|+.++|.+||+.++++..+..+++++.||+.|+||||+||.++|++|++.|+++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999999899999999999999999999999999999999862
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
...|+++||..|++++.+.
T Consensus 435 --------~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 435 --------RKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp --------CSSBCHHHHHHHHHHHHHH
T ss_pred --------CCccCHHHHHHHHHHHhcC
Confidence 1569999999999987543
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-49 Score=383.93 Aligned_cols=247 Identities=36% Similarity=0.641 Sum_probs=227.4
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|+++|+||+|++++|++|++.+.+|+.+|++|...+ +.+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g-~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG-IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 35789999999999999999999999999999999865 78899999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
++|.|++++.++.+|..|+..+||||||||+|.+++++.... .....+.+.+|+..+|++.. ..+++||+|||+|
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp 330 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRP 330 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESST
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC--CCCeEEEEecCCc
Confidence 999999999999999999999999999999999998874432 33456678899999999875 5679999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.||++++| ||+..|+|++|+.++|.+||+.++++.....++|+..+|+.|+||||+||.++|++|++.|+++.
T Consensus 331 ~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~---- 406 (437)
T 4b4t_L 331 DTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD---- 406 (437)
T ss_dssp TSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 69999999999999999999999999988889999999999999999999999999999998752
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
...|+.+||..|++++.+.
T Consensus 407 --------~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 407 --------RDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp --------CSSBCHHHHHHHHHHHHHT
T ss_pred --------CCCCCHHHHHHHHHHHHhc
Confidence 1569999999999988765
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-49 Score=412.28 Aligned_cols=300 Identities=33% Similarity=0.554 Sum_probs=272.4
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..+.++|+||+|+++++++|++.+.+|+.+|++|...+ ..+|+|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcC-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 45679999999999999999999999999999999865 78899999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL 240 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 240 (396)
+++.|++++.++.+|..|+.++||||||||+|.+++++.....+...+++++|+..|+++.. ..+|+||++||+++.+
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTS
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc--cCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999999988777777778899999999999875 5679999999999999
Q ss_pred cHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016044 241 DEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKG 318 (396)
Q Consensus 241 ~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~ 318 (396)
|++++| ||+..|+++.|+..+|.+||+.++++..+..++++..+|..|.||+|+||..+|++|++.|+++........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999 999999999999999999999999999888999999999999999999999999999999999976554322
Q ss_pred CCCC-----CCCCCCHHHHHHHHHhcccchhhhhhhhccCCCCCccccCCCccHhHHHHHHHHHHHHHHHHhccCCCCCC
Q 016044 319 KPAA-----APRPLSRLDLEKVLTTSRKTRVAATEYTLNSQSSGWSRNNESNDYQVQAAISELSRLVVSQIMNIQSEPDT 393 (396)
Q Consensus 319 ~~~~-----~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~w~di~~~~~~~~~~~L~ei~~~~~~~~~~~~~~~~~ 393 (396)
.... ....++.+||..|++.++|+ .........|+++|+|++|++ ++++.|.|+ +.||..+|..
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps--~~r~~~~~~p~v~w~diggl~--~~k~~l~e~-------v~~p~~~p~~ 502 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPS--ALRETVVEVPQVTWEDIGGLE--DVKRELQEL-------VQYPVEHPDK 502 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCC--CCCCCCCBCCCCCSTTCCSCH--HHHHHHTTT-------TTTTTTCSGG
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCc--ccccccccCCCCCHHHhCCHH--HHHHHHHHH-------HHhhhhCHHH
Confidence 2111 23568899999999999998 566667789999999999999 888888887 7899999887
Q ss_pred C
Q 016044 394 Q 394 (396)
Q Consensus 394 ~ 394 (396)
|
T Consensus 503 f 503 (806)
T 3cf2_A 503 F 503 (806)
T ss_dssp G
T ss_pred H
Confidence 6
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-47 Score=373.42 Aligned_cols=244 Identities=36% Similarity=0.593 Sum_probs=224.8
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.|+++|+||+|++++|++|++.+.+|+.+|+.|...+ ..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g-~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG-IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 45789999999999999999999999999999999865 78899999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
++|.|++++.++.+|..|+...||||||||+|.+++.+... ......+++++|+..+||+.. ..+++||+|||+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRA 321 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC--CCCEEEEEecCCh
Confidence 99999999999999999999999999999999999887432 234556788999999999875 5579999999999
Q ss_pred CCCcHHHHh--ccCCceEeC-CCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIG-MPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~-~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
+.+|++++| ||+..|+|| +|+.++|..||+.++++..+..+++++.+|..|+||||+||.++|++|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 999999999 999999996 89999999999999999998899999999999999999999999999999999862
Q ss_pred HhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 315 ERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 315 ~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
...|+++||+.|+...
T Consensus 399 ---------~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 399 ---------RYVILQSDLEEAYATQ 414 (428)
T ss_dssp ---------CSSBCHHHHHHHHHHH
T ss_pred ---------CCCCCHHHHHHHHHHh
Confidence 1569999999999764
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.6e-46 Score=385.91 Aligned_cols=262 Identities=37% Similarity=0.658 Sum_probs=194.6
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 80 PDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 80 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
...++++|++|+|++++|+.|.+.+.+|+.+|+.|...+ ..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 356789999999999999999999999999999998865 7789999999999999999999999999999999999999
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCC---CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRT---SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
.++|+|++++.++.+|..|+...||||||||+|.+++.|.. .......+++++|+.+||++.. ..+|+||+|||+
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~ 625 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNR 625 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS--SSSEEEECC-CC
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC--CCCEEEEEeCCC
Confidence 99999999999999999999999999999999999988753 2345677899999999999875 567999999999
Q ss_pred CCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 237 PSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 237 ~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
|+.||++++| ||++.+++++|+.++|.+||+.++++.++..+++++.||+.|+||||+||.++|++|++.|+++.++.
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~ 705 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999999999999998899999999999999999999999999999999998654
Q ss_pred HhcC-------------CCCCCCCCCCHHHHHHHHHhcccchh
Q 016044 315 ERKG-------------KPAAAPRPLSRLDLEKVLTTSRKTRV 344 (396)
Q Consensus 315 ~~~~-------------~~~~~~~~i~~~d~~~al~~~~~~~~ 344 (396)
.... ......++|+++||+.|++.++|+..
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 706 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp ----------------------CCC----CCTTTC--------
T ss_pred hhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 2110 01123467999999999999999854
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.6e-41 Score=320.86 Aligned_cols=260 Identities=36% Similarity=0.612 Sum_probs=229.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCcEEEEecccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-GAVFINVRISNL 159 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-~~~~~~i~~~~l 159 (396)
+.++++|+||+|++++|+.|.+.+.+|+.+++.|... ..+++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 4568999999999999999999999999999999753 5678999999999999999999999999 899999999999
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE 239 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 239 (396)
.+++.|+.++.++.+|..+...+|+||||||+|.+.+.+.........++.++++..++++.. ...+++||++||+++.
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWV 161 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCccc
Confidence 999999999999999999999999999999999999888777777788889999999998753 2568999999999999
Q ss_pred CcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 016044 240 LDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERK- 317 (396)
Q Consensus 240 l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~- 317 (396)
++++++|||+..+++++|+.++|.+|++.++...... .+.++..+++.+.||+|+||..+|++|++.++++.......
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999876654 55678999999999999999999999999999998643110
Q ss_pred -----C-----------------------------C--CCCCCCCCCHHHHHHHHHhcccch
Q 016044 318 -----G-----------------------------K--PAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 318 -----~-----------------------------~--~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
. . ......+|+++||..|++.++|+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~ 303 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTV 303 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSC
T ss_pred hhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCC
Confidence 0 0 000135899999999999999883
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=4.6e-40 Score=313.58 Aligned_cols=260 Identities=37% Similarity=0.619 Sum_probs=226.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..++++|++|+|++.+++.|.+.+.+|+.+++.|..+ ..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 5678999999999999999999999999999998764 46789999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL 240 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 240 (396)
+++.|+.+..++.+|..+...+|+||||||+|.+...+.........++..+++..+++... ...+++||++||.++.+
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQL 167 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT-SCCCEEEEEEESCGGGS
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc-cCCceEEEEecCChhhC
Confidence 99999999999999999999999999999999998887666666667788899999998753 35679999999999999
Q ss_pred cHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 016044 241 DEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKG- 318 (396)
Q Consensus 241 ~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~- 318 (396)
++++++||+..+++++|+.++|.+|++.++...... .+.++..++..+.||+++||..+|++|++.++++..+.....
T Consensus 168 d~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~ 247 (322)
T 3eie_A 168 DSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247 (322)
T ss_dssp CHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEE
T ss_pred CHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999876654 556789999999999999999999999999999987542110
Q ss_pred ------------------------------CCCCCCCCCCHHHHHHHHHhcccch
Q 016044 319 ------------------------------KPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 319 ------------------------------~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
.......+|+++||..|++.++|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 248 VSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp CC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred hccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 0011236799999999999999984
No 11
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.4e-40 Score=330.38 Aligned_cols=278 Identities=34% Similarity=0.575 Sum_probs=234.5
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK 162 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~ 162 (396)
..++|++|+|++.+++.|.+.+..++.+++.|...+ ..+++++||+||||||||++|++++++++.+|+.++|+++.+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 357899999999999999999999999999998754 5678999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcH
Q 016044 163 WFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDE 242 (396)
Q Consensus 163 ~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~ 242 (396)
+.|+.+..++.+|..+....|++|||||+|.+.+++.....+...++...|+..+++... ..+++||+|||+++.+++
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCG
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCH
Confidence 999999999999999999999999999999999888766666777888899999998754 567999999999999999
Q ss_pred HHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016044 243 AILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKP 320 (396)
Q Consensus 243 ~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~ 320 (396)
++++ ||+..++++.|+.++|.+||+.+++...+..+.++..++..+.||+++||..+|++|++.++++..........
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999 99999999999999999999999998888888899999999999999999999999999999875432111100
Q ss_pred C-----CCCCCCCHHHHHHHHHhcccchhhhhhhhccCCCCCccccCCCc
Q 016044 321 A-----AAPRPLSRLDLEKVLTTSRKTRVAATEYTLNSQSSGWSRNNESN 365 (396)
Q Consensus 321 ~-----~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~w~di~~~~ 365 (396)
. .....++++||..|++.++|+ ...+.....|+++|+||||..
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps--~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPS--ALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHH--HHHGGGC--------------
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCch--hhhcccccCCCCCHHHcCCCc
Confidence 0 012469999999999999998 677888899999999999975
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.3e-39 Score=301.22 Aligned_cols=259 Identities=33% Similarity=0.577 Sum_probs=208.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..|+++|+||+|++++|+.|++.+.+|+.+++.+...+ +..++|++|+||||||||++++++|..++..++.+++.++.
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~-l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~ 81 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG-LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELL 81 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTT-CCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC-CCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHH
Confidence 35678999999999999999999999999999998865 56778899999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL 240 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 240 (396)
+.+.++.++.+..+|..+....|+++|+||+|.+...+.........+..++++..+++... ...++++++||+|+.+
T Consensus 82 ~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 82 NMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDII 159 (274)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGS
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhC
Confidence 99999999999999999988899999999999987655433333445677889999998764 4568999999999999
Q ss_pred cHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcC---CCCCCCCCHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHHH
Q 016044 241 DEAILR--RLPQAFEIGMPDRKERAQILKVILKG---EKVEENIDFDYLAGLC--EGFTGSDLLEVCKQAAYFSIRELLD 313 (396)
Q Consensus 241 ~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~---~~~~~~~~l~~la~~~--~g~s~~di~~l~~~A~~~a~~~~~~ 313 (396)
|++++| ||+..+++++|+.++|.+||+.+++. .....+++++.+|..+ +||||+||.++|++|++.++++...
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 99999999999999999999999854 3445789999999875 4999999999999999999988643
Q ss_pred HHhcCCCCCCCCCCCHHHHHHHHHhcccch
Q 016044 314 EERKGKPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 314 ~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
..... .......|+++||+.|++.++|+.
T Consensus 240 ~~~~~-~~~~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 240 RQKSG-NEKGELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp -----------CCBCHHHHHHHHTTCCCCC
T ss_pred hcccc-ccccCCeecHHHHHHHHHHhcCCC
Confidence 32211 112235799999999999999984
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.3e-39 Score=312.42 Aligned_cols=264 Identities=37% Similarity=0.610 Sum_probs=218.2
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 77 VINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 77 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
.+....++++|++|+|++.+++.|.+.+.+|+.+++.|..+ ..+++++||+||||||||++|+++|++++.+|+.+++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 34456778999999999999999999999999999999864 5678899999999999999999999999999999999
Q ss_pred ccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 157 SNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 157 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
+++.+.+.|+.+..++.+|..+....|+||||||+|.+.+.+.........++.++++..+++... ...+++||++||+
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vI~atn~ 196 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNI 196 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESC
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc-cCCCeEEEeecCC
Confidence 999999999999999999999999899999999999998877666666777888899999998753 2457999999999
Q ss_pred CCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 237 PSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 237 ~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
++.++++++|||+..+++++|+.++|.+||+.++...... .+.+++.|+..+.||+|+||.++|++|++.|+++.....
T Consensus 197 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 197 PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999877643 456789999999999999999999999999999875431
Q ss_pred hc----C---------------------------CCCCCCCCCCHHHHHHHHHhcccch
Q 016044 316 RK----G---------------------------KPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 316 ~~----~---------------------------~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
.. . .......+|+++||..|++.++|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 10 0 0001235799999999999999983
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4e-39 Score=304.20 Aligned_cols=260 Identities=38% Similarity=0.667 Sum_probs=223.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.++++|++|+|++++++.|.+.+.+|+.+++.|...+ ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC-CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 45689999999999999999999999999999998754 56789999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
+++.|+.+..++.+|..+....|++|||||+|.+...+... ......++..+++..++++.. ..+++||++||++
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~ 164 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRP 164 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCc
Confidence 99999998999999999999899999999999987654321 112234566788888988753 5679999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.++++++| ||+..+++++|+.++|.+|++.+++......+++++.++..+.||+|+||.++|++|++.++++.+...
T Consensus 165 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~ 244 (301)
T 3cf0_A 165 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 244 (301)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999999988877889999999999999999999999999999998876432
Q ss_pred hcCC-------------CCCCCCCCCHHHHHHHHHhcccch
Q 016044 316 RKGK-------------PAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 316 ~~~~-------------~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
.... .......|+++||..|++.++|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 245 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp C--------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred hhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 1100 011235799999999999998874
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.2e-38 Score=316.22 Aligned_cols=264 Identities=36% Similarity=0.626 Sum_probs=221.0
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCcEEEEe
Q 016044 77 VINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-GAVFINVR 155 (396)
Q Consensus 77 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-~~~~~~i~ 155 (396)
.+....++++|++|+|++.+++.|.+.+.+|+.+++.|... ..+++++||+||||||||++|+++|+++ +.+|+.++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 34456788999999999999999999999999999998753 4567999999999999999999999999 89999999
Q ss_pred cccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecC
Q 016044 156 ISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATN 235 (396)
Q Consensus 156 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 235 (396)
++++.+.+.|+.+..++.+|..+....|+||||||+|.+.+.+.........++.++++..+++... .+.+++||+|||
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn 279 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATN 279 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEES
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc-CCCCEEEEecCC
Confidence 9999999999988999999999999999999999999998887776667777888899999988753 256799999999
Q ss_pred CCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 236 RPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 236 ~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
+++.++++++|||+..+.+++|+.++|..|++.++...... .+.++..|+..+.||+|+||..+|++|++.++++....
T Consensus 280 ~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 280 IPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp CGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999876543 55678999999999999999999999999999998653
Q ss_pred Hhc----C-------------------------------CC--CCCCCCCCHHHHHHHHHhcccch
Q 016044 315 ERK----G-------------------------------KP--AAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 315 ~~~----~-------------------------------~~--~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
... + .. .....+|+++||..|++.++|+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~ 425 (444)
T 2zan_A 360 THFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTV 425 (444)
T ss_dssp SEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSC
T ss_pred hhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCC
Confidence 100 0 00 01135899999999999999883
No 16
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=297.21 Aligned_cols=267 Identities=38% Similarity=0.678 Sum_probs=220.5
Q ss_pred hccccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 74 ACDVINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
...+++ ..++++|++|+|++.+++.|.+.+.+|+.+++.|... ..+++++||+||||||||++|+++|++++.+|+.
T Consensus 71 ~~~i~~-~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 71 MNEIMD-HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp HHHTBC-CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred Hhhccc-CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 344443 4568999999999999999999999999999988653 3567899999999999999999999999999999
Q ss_pred EecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 154 VRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 154 i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
++++++...+.|+.+..++.+|..+....|+||||||+|.+...+.........++..+++..+++.......+++||++
T Consensus 148 i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~a 227 (357)
T 3d8b_A 148 ISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 227 (357)
T ss_dssp EEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEE
T ss_pred EehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 99999999999999999999999999889999999999999887766666667778889999999876555678999999
Q ss_pred cCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Q 016044 234 TNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 312 (396)
Q Consensus 234 tn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~ 312 (396)
||.++.+++++++||+..++++.|+.++|.++++.++...... .+.++..++..+.||+++||..+|++|+..+++++.
T Consensus 228 tn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 228 TNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp ESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred cCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999899999999999999999999765443 344578899999999999999999999999998754
Q ss_pred HHHhcCCCCCCCCCCCHHHHHHHHHhcccch
Q 016044 313 DEERKGKPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 313 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
.............+|+.+||..|++.++|+.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGGGC
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 3322222334457899999999999999873
No 17
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-36 Score=284.53 Aligned_cols=261 Identities=44% Similarity=0.705 Sum_probs=215.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..++++|++|+|++.+++.+.+.+..|+.+++.|... ..+++++||+||||||||++|+++|++++.+|+.++|+++.
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 5678999999999999999999999999999988653 34678999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC-CCCcEEEEEecCCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD-QNARVMVLAATNRPSE 239 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~v~vI~atn~~~~ 239 (396)
..+.++.+..++.+|..+....|++|||||+|.+...+.........+....++..+++.... ...++++|++||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 999999999999999999998999999999999988776544444556677888888876542 1256999999999999
Q ss_pred CcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016044 240 LDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKG 318 (396)
Q Consensus 240 l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~ 318 (396)
+++++++||+..+.+++|+.++|..+++.++...... .+.++..++..+.||+++||..+|++|+..++++........
T Consensus 172 l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~ 251 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC 251 (297)
T ss_dssp BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999998765432 334578899999999999999999999999998754333333
Q ss_pred CCCCCCCCCCHHHHHHHHHhcccch
Q 016044 319 KPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 319 ~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
........|+.+||..|++.++|+.
T Consensus 252 ~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 252 LDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp --CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred ccccccCCcCHHHHHHHHHHcCCCC
Confidence 3334457899999999999988873
No 18
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=294.18 Aligned_cols=271 Identities=42% Similarity=0.693 Sum_probs=216.6
Q ss_pred cchhhhccccCCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 69 YEDVIACDVINPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+++.+...++. ..++++|++|+|++.+++.|.+++..++.+++.|... ..+++++||+||||||||++|+++|++++
T Consensus 97 ~~~~~~~~~~~-~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 97 LANLIMNEIVD-NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCTTGGGTTBC-CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhc-cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 33444444443 5678899999999999999999999999999888754 34578999999999999999999999999
Q ss_pred CcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcE
Q 016044 149 AVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARV 228 (396)
Q Consensus 149 ~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 228 (396)
.+|+.++|+++.+.+.|..+..+..+|..+....|+||||||+|.++..+.........++...++..+++.....+.++
T Consensus 174 ~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 174 ATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp CEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred CcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 99999999999999999999999999999999999999999999998877666666677888899999998876556789
Q ss_pred EEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 016044 229 MVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFS 307 (396)
Q Consensus 229 ~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a 307 (396)
+||++||+++.+++++++||...++++.|+.++|.+||+.++...... .+.++..++..+.||++++|..+|++|+..+
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~ 333 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGP 333 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998899999999999999999999765443 3345788999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 308 IRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
++++...............|+.+||..+++.++++
T Consensus 334 ~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 334 IRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 98865444333444456789999999999998876
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.4e-35 Score=274.15 Aligned_cols=247 Identities=40% Similarity=0.669 Sum_probs=217.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..++++|++|+|++++++.|.+.+..++.+++.+...+ ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG-IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC-CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 45678999999999999999999999999999998754 56788999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
..+.+.....+..+|..+....|+||||||+|.+.+++.... .....+.+..++..+++... +.++++|+|||.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRP 166 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCc
Confidence 999999999999999999999999999999999987765432 22333455566666666543 4579999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.+++++++ ||+..+.++.|+.++|.+|++.++.......+.++..++..+.|+++++|..+|+.|...|+.+.
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~---- 242 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL---- 242 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999999 99999999999999999999999998888888899999999999999999999999999988752
Q ss_pred hcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 316 RKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 316 ~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
...|+.+||..|+..+.+.
T Consensus 243 --------~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 243 --------RDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp --------CSSBCHHHHHHHHHHHHHH
T ss_pred --------cCcCCHHHHHHHHHHHHhc
Confidence 1569999999999987654
No 20
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=5.7e-35 Score=289.42 Aligned_cols=248 Identities=31% Similarity=0.537 Sum_probs=213.7
Q ss_pred cCCC-CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 78 INPD-HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 78 ~~~~-~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
+.++ .+.++|+||+|++++++++++.+.. +..+..|...+ ...|+|+||+||||||||++|+++|.+.+.+|+.+++
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g-~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIG-ARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTT-CCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcC-CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 3445 6788999999999999999998765 66777777654 5678899999999999999999999999999999999
Q ss_pred ccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 157 SNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 157 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
+++...+.|.....++.+|..+....|+||||||+|.+..+++.. ......+.+++++..++++.. +.+++||++
T Consensus 83 ~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaa 160 (476)
T 2ce7_A 83 SDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAA 160 (476)
T ss_dssp GGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEE
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEe
Confidence 999999999999999999999999999999999999998776532 222334567788888887754 457999999
Q ss_pred cCCCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHH
Q 016044 234 TNRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIREL 311 (396)
Q Consensus 234 tn~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~ 311 (396)
||+++.++++++| ||+..+.+++|+.++|.+|++.+++..++..++++..++..+.||+|+||.++|++|+..+.++.
T Consensus 161 Tn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~ 240 (476)
T 2ce7_A 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG 240 (476)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC
Confidence 9999999999998 99999999999999999999999998888888999999999999999999999999998887541
Q ss_pred HHHHhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 312 LDEERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 312 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
...|+.+||..|+..+.+
T Consensus 241 ------------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 241 ------------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ------------CSSBCHHHHHHHHHHHC-
T ss_pred ------------CCeecHHHHHHHHHHHhc
Confidence 256999999999998754
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.3e-34 Score=267.09 Aligned_cols=245 Identities=37% Similarity=0.565 Sum_probs=208.9
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 80 PDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 80 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
+..++.+|++|+|++.+++.+.+.+.+ +.+++.+...+ ...+++++|+||||||||++|+++++.++.+++.++++++
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcC-CCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 456788999999999999999988765 67777766543 4567899999999999999999999999999999999999
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
...+.+.....+..+|..+....|+++||||+|.+...+... ......+....++..++++.. +.++++|++||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~ 159 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNR 159 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESC
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCC
Confidence 988888888899999999988889999999999998766432 122233566788888887653 567999999999
Q ss_pred CCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 237 PSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 237 ~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
++.+++++++ ||+..+.+++|+.++|.+|++.+++...+..+.++..++..+.||+++||.++|++|+..|..+.
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--- 236 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--- 236 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC---
Confidence 9999999998 99999999999999999999999998888788889999999999999999999999999887642
Q ss_pred HhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 315 ERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 315 ~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
...|+.+||..|++.+.
T Consensus 237 ---------~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 237 ---------KRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp ---------CSSBCHHHHHHHHHHHT
T ss_pred ---------CCcccHHHHHHHHHHHh
Confidence 25799999999998764
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=264.15 Aligned_cols=244 Identities=32% Similarity=0.481 Sum_probs=189.5
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK 162 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~ 162 (396)
|+++|++|+|++.+++.+.+.+.. +.+++.|...+ ..+++++||+||||||||++|+++|++++.+++.++++++...
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g-~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLG-AKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV 78 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC-------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhh
Confidence 467899999999999999998765 66777776543 5668899999999999999999999999999999999999998
Q ss_pred hhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc----hHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 163 WFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD----HEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 163 ~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
+.+.....+..+|..+....|++|||||+|.+..++.... .......+..++..+++... ..++++|++||.++
T Consensus 79 ~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 79 IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRAD 156 (262)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGG
T ss_pred ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChh
Confidence 8888889999999999888899999999999977654321 12223455677777776543 45799999999999
Q ss_pred CCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 239 ELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENID--FDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 239 ~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~--l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
.+++++++ ||+..+++++|+.++|.++++.++.......+.+ ...++..+.||++++|..+|+.|+..+.++..
T Consensus 157 ~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~-- 234 (262)
T 2qz4_A 157 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH-- 234 (262)
T ss_dssp GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------
T ss_pred hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 99999999 9999999999999999999999998766553332 47899999999999999999999988876521
Q ss_pred HhcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 315 ERKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 315 ~~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
..|+.+||..|++.+.+.
T Consensus 235 ----------~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 235 ----------TSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp ------------CCBCCHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHhccC
Confidence 568999999999987655
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.4e-33 Score=296.11 Aligned_cols=300 Identities=33% Similarity=0.553 Sum_probs=258.3
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..+.++|++|+|++.+++.|.+.+..|+.+++.|.... ..++.++||+||||||||++|++++.+++.+++.+++.++.
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~-i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~ 275 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSC-CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhh
Confidence 34568999999999999999999999999999998764 67789999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL 240 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 240 (396)
+.+.++.+..+..+|..+....|+++||||+|.+..++.....+...++...++..+++... ...+++|++||+++.+
T Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~--~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT--TSCCEEEEECSCTTTS
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc--cccEEEecccCCchhc
Confidence 99999999999999999999999999999999999887766666677788899999998764 4678999999999999
Q ss_pred cHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 016044 241 DEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERK- 317 (396)
Q Consensus 241 ~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~- 317 (396)
++++.+ ||+..+.++.|+.++|.++++.++....+..+.++..++..+.||+++++..+|++|+..++++.......
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999998 99999999999999999999999999888888899999999999999999999999999988764321100
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHhcccchhhhhhhhccCCCCCccccCCCccHhHHHHHHHHHHHHHHHHhccCCCCCC
Q 016044 318 ----GKPAAAPRPLSRLDLEKVLTTSRKTRVAATEYTLNSQSSGWSRNNESNDYQVQAAISELSRLVVSQIMNIQSEPDT 393 (396)
Q Consensus 318 ----~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~w~di~~~~~~~~~~~L~ei~~~~~~~~~~~~~~~~~ 393 (396)
.........++.+|+..++....++ .........+.+.|++++|++ +++..|.+. +.|+..+|..
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~~s--~~~~~~~~~~~v~~~di~gl~--~vk~~l~~~-------v~~~~~~~~~ 502 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPS--ALRETVVEVPQVTWEDIGGLE--DVKRELQEL-------VQYPVEHPDK 502 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSCCC--CCCCCCCCCCCCSSCSSSCCC--CHHHHHHTT-------TTSSSSSCTT
T ss_pred hhccchhhhhhhhhhhhhhhccccccCch--hhhhhcccCccccccccccch--hhhhhHHHH-------HHhhhhchHH
Confidence 0001123568889999999998876 344445568899999999999 888777776 6777777765
Q ss_pred C
Q 016044 394 Q 394 (396)
Q Consensus 394 ~ 394 (396)
|
T Consensus 503 ~ 503 (806)
T 1ypw_A 503 F 503 (806)
T ss_dssp T
T ss_pred H
Confidence 4
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-32 Score=273.75 Aligned_cols=244 Identities=35% Similarity=0.556 Sum_probs=210.7
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK 162 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~ 162 (396)
+.++|++|+|++++++++++.+.. +..+..|...+ ...++|++|+||||||||++|+++|.+++.+++.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg-~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTS-CCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 789999999999999999998765 66677776643 5567899999999999999999999999999999999999988
Q ss_pred hhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCC
Q 016044 163 WFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSE 239 (396)
Q Consensus 163 ~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 239 (396)
+.+.....++.+|..+....|+++||||+|.+...+... ......+.+++++..+++... +..++++++||+|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 888888889999998877788999999999997765431 233345567788888888754 456899999999999
Q ss_pred CcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016044 240 LDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERK 317 (396)
Q Consensus 240 l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~ 317 (396)
+|++++| ||+..+.+++|+.++|.+||+.++++..+..++++..+|..+.||+|+||.++|++|+..+.++
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------- 254 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 254 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT-------
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999998888888899999999999999999999999999877653
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 318 GKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 318 ~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
....|+.+||..|+..+.+.
T Consensus 255 -----~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 255 -----GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp -----CCSSCCSHHHHHHHHHHTTC
T ss_pred -----CCCccCHHHHHHHHHHHhcc
Confidence 12579999999999987554
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=6.7e-32 Score=248.42 Aligned_cols=241 Identities=35% Similarity=0.567 Sum_probs=200.9
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 80 PDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 80 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
+..+.++|++++|+++++.++++.... +..+..+.... ...++|++|+||||||||+++++++...+.+++.+++.++
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~-~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTT-CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcC-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 466789999999999999999987765 45566666543 4567889999999999999999999999999999999888
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
...+.+.....+..+|+.+....|+++++||+|.+...+... ......+....++..+++... ...++++++||.
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~ 163 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNR 163 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESC
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCC
Confidence 877778778888889998877778999999999987655321 122334566788888887653 456889999999
Q ss_pred CCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 237 PSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 237 ~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
|+.+|++++| ||+..++++.|+.++|.+||+.++++..+..+.++..++..+.||+++||.++|++|+..+.++.
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~--- 240 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--- 240 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc---
Confidence 9999999998 89999999999999999999999988877788899999999999999999999999998887541
Q ss_pred HhcCCCCCCCCCCCHHHHHHHH
Q 016044 315 ERKGKPAAAPRPLSRLDLEKVL 336 (396)
Q Consensus 315 ~~~~~~~~~~~~i~~~d~~~al 336 (396)
...|+.+||++|+
T Consensus 241 ---------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 ---------RRKITMKDLEEAA 253 (254)
T ss_dssp ---------CSSBCHHHHHHHT
T ss_pred ---------CCCcCHHHHHHHh
Confidence 1569999999875
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.98 E-value=2.6e-34 Score=266.58 Aligned_cols=249 Identities=35% Similarity=0.544 Sum_probs=202.9
Q ss_pred CCCCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 79 NPDHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 79 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
++..++.+|++|+|++.+++.+.+.+.. +.+++.|...+ ...++++||+||||||||++|+++|++++.+++.++++.
T Consensus 2 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~ 79 (268)
T 2r62_A 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSS 79 (268)
T ss_dssp CCCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHS-CCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCT
T ss_pred CccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHH
Confidence 4567788999999999999999998765 77888877643 456788999999999999999999999999999999999
Q ss_pred ccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCch----HHHHhhHHHHHHHhhccCcCCCCcEEEEEec
Q 016044 159 LMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH----EALTNMKTEFMALWDGFTTDQNARVMVLAAT 234 (396)
Q Consensus 159 l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~----~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 234 (396)
+...+.+.....++.+|..+....|+||||||+|.+...+..... ....+....++..+++... ...++++|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~tt 158 (268)
T 2r62_A 80 FIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAAT 158 (268)
T ss_dssp TTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECB
T ss_pred HHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEec
Confidence 988887776666777888888888999999999999766432111 0111233455666665442 24568999999
Q ss_pred CCCCCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Q 016044 235 NRPSELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELL 312 (396)
Q Consensus 235 n~~~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~ 312 (396)
|.++.+++++++ ||+..+++++|+.++|.++|+.+++......+.++..++..+.||+|+||.++|+.|...|..+
T Consensus 159 n~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~-- 236 (268)
T 2r62_A 159 NRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN-- 236 (268)
T ss_dssp SCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS--
T ss_pred CCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--
Confidence 999999999999 9999999999999999999999998887777888899999999999999999999998776532
Q ss_pred HHHhcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 313 DEERKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 313 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
....|+.+|+..++....++
T Consensus 237 ----------~~~~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 237 ----------NQKEVRQQHLKEAVERGIAG 256 (268)
T ss_dssp ----------CCCSCCHHHHHTSCTTCCCC
T ss_pred ----------ccCCcCHHHHHHHHHHHhhc
Confidence 12579999999999887776
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.3e-34 Score=305.86 Aligned_cols=260 Identities=38% Similarity=0.667 Sum_probs=213.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
..+.++|++++|++++|+.+.+.+.+|+.+++.|...+ ..++.++||+||||||||++|+++|..++.+++.++++++.
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCC-CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcC-CCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 45678999999999999999999999999999887754 56788999999999999999999999999999999999999
Q ss_pred chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 161 SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
++|.|+.+..++.+|..++...|+||||||+|.+...+... ......+++++++..+++... ..+++||+|||++
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~ 626 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRP 626 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSC
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc--cCCeEEEEecCCc
Confidence 99999999999999999999999999999999998777543 234667888899999998754 5679999999999
Q ss_pred CCCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 016044 238 SELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 238 ~~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~ 315 (396)
+.+|++++| ||+..++++.|+.++|.+||+.+++...+..++++..+++.+.|||++||.++|++|+..|+++.+...
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~ 706 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 706 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC----
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999988888889999999999999999999999999999998754321
Q ss_pred hcC-------------CCCCCCCCCCHHHHHHHHHhcccch
Q 016044 316 RKG-------------KPAAAPRPLSRLDLEKVLTTSRKTR 343 (396)
Q Consensus 316 ~~~-------------~~~~~~~~i~~~d~~~al~~~~~~~ 343 (396)
... .......+|+.+||+.|++..+|+.
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~sv 747 (806)
T 1ypw_A 707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp --------------------CCTTTTTTSSCCCCCC-----
T ss_pred HhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 100 0111235688889988887777663
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=3e-30 Score=240.65 Aligned_cols=239 Identities=36% Similarity=0.567 Sum_probs=198.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
.++++|++|+|+++++++++..... +..+..+.... ...++|++|+||||||||+++++++..++..++.+++.++..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~-~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTT-CCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcC-CCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 3789999999999999999987765 45556665543 455678999999999999999999999999999999988877
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCC---chHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTS---DHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS 238 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 238 (396)
.+.+.....+..+|+.+....|+++++||+|.+...+... ......+.+..++..+++... ...++++++||.|+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPD 189 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTT
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCch
Confidence 7777778888899998887788999999999987654321 122334556677777877653 45688999999999
Q ss_pred CCcHHHHh--ccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 016044 239 ELDEAILR--RLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEER 316 (396)
Q Consensus 239 ~l~~~l~~--R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~ 316 (396)
.+|++++| ||+..++++.|+.++|.+||+.+++...+..++++..++..+.|++++||.++|++|+..+.++.
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~----- 264 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG----- 264 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 89999999999999999999999988877788899999999999999999999999998876531
Q ss_pred cCCCCCCCCCCCHHHHHHHH
Q 016044 317 KGKPAAAPRPLSRLDLEKVL 336 (396)
Q Consensus 317 ~~~~~~~~~~i~~~d~~~al 336 (396)
...|+.+||++|+
T Consensus 265 -------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 -------RRKITMKDLEEAA 277 (278)
T ss_dssp -------CCSBCHHHHHHHT
T ss_pred -------CCCcCHHHHHHHh
Confidence 1569999999875
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=2.4e-26 Score=215.69 Aligned_cols=173 Identities=21% Similarity=0.308 Sum_probs=132.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHH----HHhCCcEEEEccccccc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLA----YKLQPAIIFIDEVDSFL 195 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~vl~iDEid~l~ 195 (396)
..+|+++||+||||||||++|+++|++++.+++.++++++.+.+.|+.+..++.+|..+ +...|+||||||+|.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 56789999999999999999999999999999999999999999999999999999888 46689999999999998
Q ss_pred cCCCCCch--HHHHhhHHHHHHHhhccC---------cCCCCcEEEEEecCCCCCCcHHHHh--ccCCceEeCCCCHHHH
Q 016044 196 GQRRTSDH--EALTNMKTEFMALWDGFT---------TDQNARVMVLAATNRPSELDEAILR--RLPQAFEIGMPDRKER 262 (396)
Q Consensus 196 ~~~~~~~~--~~~~~~~~~ll~~l~~~~---------~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~~~~P~~~er 262 (396)
+....... .....+...++..+|+.. .....+++||+|||.++.++++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 75432211 122345567777777432 1134579999999999999999997 8877776 5799999
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHH
Q 016044 263 AQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLE 298 (396)
Q Consensus 263 ~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~ 298 (396)
.+|++.++.. .+++.+.++..+.||++++|..
T Consensus 191 ~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 9999988864 3567899999999999998864
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=2.7e-25 Score=221.24 Aligned_cols=203 Identities=20% Similarity=0.219 Sum_probs=140.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CcEEEEeccc
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG--AVFINVRISN 158 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~--~~~~~i~~~~ 158 (396)
..+...|++|+|++++++.+..++.. +..+ ..+++++||+||||||||++|+++|++++ .+|+.+++++
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~-------~~~~--~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~ 100 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVEL-------IKSK--KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHH-------HHTT--CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGG
T ss_pred cChhhchhhccCHHHHHHHHHHHHHH-------HHhC--CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHH
Confidence 34566799999999999999887642 2222 34578999999999999999999999999 9999999999
Q ss_pred ccchhhchHHHHHHHHHHHH---HHhCCcEEEEccccccccCCCCCchHHH-------------------HhhHHHHHHH
Q 016044 159 LMSKWFGDAQKLVAAVFSLA---YKLQPAIIFIDEVDSFLGQRRTSDHEAL-------------------TNMKTEFMAL 216 (396)
Q Consensus 159 l~~~~~g~~~~~~~~~f~~a---~~~~p~vl~iDEid~l~~~~~~~~~~~~-------------------~~~~~~ll~~ 216 (396)
+.+++.|+++. +...|..+ +...|++|||||+|.+++++........ .++...++..
T Consensus 101 ~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 179 (456)
T 2c9o_A 101 VYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFES 179 (456)
T ss_dssp GCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHH
T ss_pred HHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHH
Confidence 99999999987 88899988 6778999999999999987754321110 1222345555
Q ss_pred hhccCcCCCCcEEEEEecCCCCCCcHHHHh--ccCC--ceEeCCCC--HHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCC
Q 016044 217 WDGFTTDQNARVMVLAATNRPSELDEAILR--RLPQ--AFEIGMPD--RKERAQILKVILKGEKVEENIDFDYLAGLCEG 290 (396)
Q Consensus 217 l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~--~i~~~~P~--~~er~~il~~~l~~~~~~~~~~l~~la~~~~g 290 (396)
++......+..++|++|||+++.++++++| ||+. .+.++.|+ .++|.+|++.+.. .+++.++..+.|
T Consensus 180 l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g 252 (456)
T 2c9o_A 180 LQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG 252 (456)
T ss_dssp HHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-----
T ss_pred HhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC
Confidence 543222334456667999999999999876 8988 66778774 4777777765543 267888889999
Q ss_pred CcHHHHHHHHHH
Q 016044 291 FTGSDLLEVCKQ 302 (396)
Q Consensus 291 ~s~~di~~l~~~ 302 (396)
|+||.++|..
T Consensus 253 --gadl~~l~~~ 262 (456)
T 2c9o_A 253 --GQDILSMMGQ 262 (456)
T ss_dssp ------------
T ss_pred --hhHHHHHHhh
Confidence 9999999954
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.89 E-value=1.9e-23 Score=197.21 Aligned_cols=215 Identities=17% Similarity=0.174 Sum_probs=160.6
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCC--CCCCCceEEEECCCCCcHHHHHHHHHHHc-------CCcEEEEecccc
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGK--LLGPQKGVLLYGPPGTGKTMLAKAIAKES-------GAVFINVRISNL 159 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~--~~~~~~~vLL~GppGtGKT~la~ala~~~-------~~~~~~i~~~~l 159 (396)
+|+|++++++.+.+.+..+.. +..+...+ ...++.++||+||||||||++|+++|+.+ +.+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999998876442 33332211 12345679999999999999999999987 348999999999
Q ss_pred cchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC-
Q 016044 160 MSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS- 238 (396)
Q Consensus 160 ~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~- 238 (396)
.+.+.|.....+..+|..+ .+++|||||+|.+...+.... ........++..++.. ..++++|+++|.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~--~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD--YGQEAIEILLQVMENN----RDDLVVILAGYADRM 181 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C--CTHHHHHHHHHHHHHC----TTTCEEEEEECHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc--ccHHHHHHHHHHHhcC----CCCEEEEEeCChHHH
Confidence 9999999888888888766 568999999999976543211 1233455666666643 45678899988653
Q ss_pred ----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHh-------CCCCcHHHHHHHHHHHHHH
Q 016044 239 ----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGL-------CEGFTGSDLLEVCKQAAYF 306 (396)
Q Consensus 239 ----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~-------~~g~s~~di~~l~~~A~~~ 306 (396)
.+++++++||+..+.|++|+.+++..|++.++...... .+..+..++.. ...-+++++.++++.|...
T Consensus 182 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 182 ENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999765543 11224455554 2223578999999999998
Q ss_pred HHHHHHH
Q 016044 307 SIRELLD 313 (396)
Q Consensus 307 a~~~~~~ 313 (396)
+..+...
T Consensus 262 ~~~r~~~ 268 (309)
T 3syl_A 262 QANRLFT 268 (309)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888765
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.87 E-value=4e-21 Score=185.71 Aligned_cols=221 Identities=19% Similarity=0.230 Sum_probs=155.2
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEeccccc
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRISNLM 160 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~~~l~ 160 (396)
|..+|++++|++.+++.+..+.. ....+ ..+++++||+||||||||++|+++++.++. +++.+++..+.
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~-------~~~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLE-------MIREG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHH-------HHHTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred cCcchhhccChHHHHHHHHHHHH-------HHHcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 44569999999999998765543 22222 234579999999999999999999999874 78888876644
Q ss_pred chhhchH-------------------------------------------------HHHHHHHHHHHHH----h-----C
Q 016044 161 SKWFGDA-------------------------------------------------QKLVAAVFSLAYK----L-----Q 182 (396)
Q Consensus 161 ~~~~g~~-------------------------------------------------~~~~~~~f~~a~~----~-----~ 182 (396)
..+.+.. ...++..+..+.. . .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 4332221 2223333333221 1 1
Q ss_pred CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec-----------CCCCCCcHHHHhccCCc
Q 016044 183 PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT-----------NRPSELDEAILRRLPQA 251 (396)
Q Consensus 183 p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at-----------n~~~~l~~~l~~R~~~~ 251 (396)
|+||||||+|.+.. ...+.++..++. ...+++++++. |.+..+++++++|| ..
T Consensus 190 ~~vl~IDEi~~l~~-----------~~~~~L~~~le~----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~-~~ 253 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI-----------ESFSFLNRALES----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRL-LI 253 (368)
T ss_dssp BCEEEEESGGGSBH-----------HHHHHHHHHTTC----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTE-EE
T ss_pred CceEEEhhccccCh-----------HHHHHHHHHhhC----cCCCeeeeecccceeeeeccCCCCcccCCHHHHhhc-cE
Confidence 67999999999832 122344444433 23345555554 35778999999999 55
Q ss_pred eEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHH
Q 016044 252 FEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRL 330 (396)
Q Consensus 252 i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~ 330 (396)
+.|++|+.+++.++++..+...... ++..++.++..+.+.+++++.++|+.|...|..+ ....|+.+
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------------~~~~It~~ 321 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------------KGTEVQVD 321 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------------TCSSBCHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------------CCCCCCHH
Confidence 8999999999999999988754433 2223677888888568899999999998877654 12679999
Q ss_pred HHHHHHHhcc
Q 016044 331 DLEKVLTTSR 340 (396)
Q Consensus 331 d~~~al~~~~ 340 (396)
|+.+++..+-
T Consensus 322 ~v~~a~~~~~ 331 (368)
T 3uk6_A 322 DIKRVYSLFL 331 (368)
T ss_dssp HHHHHHHHSB
T ss_pred HHHHHHHHhc
Confidence 9999998743
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.85 E-value=3.2e-20 Score=177.39 Aligned_cols=218 Identities=19% Similarity=0.204 Sum_probs=155.4
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
..+.+|++++|++.+++.+..++..... . ..++.++||+||||||||++|+++++.++.+|+.++|+.+..
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~------~---~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~ 93 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKK------R---NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK 93 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHH------T---TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHh------c---CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc
Confidence 4456899999999999999888764211 1 123578999999999999999999999999999999977632
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc--------------CCCCc
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT--------------DQNAR 227 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------------~~~~~ 227 (396)
. ..+...+.. ...+++|||||+|.+... ....++..++.... ....+
T Consensus 94 ~------~~~~~~~~~--~~~~~vl~lDEi~~l~~~-----------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 94 S------GDLAAILTN--LSEGDILFIDEIHRLSPA-----------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp H------HHHHHHHHT--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred h------hHHHHHHHh--ccCCCEEEEechhhcCHH-----------HHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 1 112222221 246799999999998421 22234444433210 01125
Q ss_pred EEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 016044 228 VMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYF 306 (396)
Q Consensus 228 v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~ 306 (396)
+++|++||....+++++++||+..+.+++|+.+++..+++..+...... .+..++.++..+.| +++++.++++.+...
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDF 233 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999998765543 22236677776666 567888888877655
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 307 SIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
+... ....|+.+++..++....
T Consensus 234 a~~~------------~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 234 ADVN------------DEEIITEKRANEALNSLG 255 (338)
T ss_dssp HHHT------------TCSEECHHHHHHHHHHHT
T ss_pred HHhh------------cCCccCHHHHHHHHHHhC
Confidence 4321 114578888888776543
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=6.1e-21 Score=179.71 Aligned_cols=246 Identities=22% Similarity=0.254 Sum_probs=159.7
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc-hhhch
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS-KWFGD 166 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~-~~~g~ 166 (396)
++|+|++.+++.+...+..+..+............+.++||+||||||||++|+++++.++.+++.++|+.+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 35899999999998887654332222111000124678999999999999999999999999999999988865 34442
Q ss_pred -HHHHHHHHHHHH-----HHhCCcEEEEccccccccCCCCCchHHHH-hhHHHHHHHhhccCc------CCCCcEEEEEe
Q 016044 167 -AQKLVAAVFSLA-----YKLQPAIIFIDEVDSFLGQRRTSDHEALT-NMKTEFMALWDGFTT------DQNARVMVLAA 233 (396)
Q Consensus 167 -~~~~~~~~f~~a-----~~~~p~vl~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~l~~~~~------~~~~~v~vI~a 233 (396)
....+..++..+ ....++||||||+|.+............. .+.+.++..+++... ....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 223444444421 11235899999999997765433322222 234566776765311 01346788888
Q ss_pred ----cCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHh-----------cCCCCC---CCCCHHHHHHhCC------
Q 016044 234 ----TNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVIL-----------KGEKVE---ENIDFDYLAGLCE------ 289 (396)
Q Consensus 234 ----tn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l-----------~~~~~~---~~~~l~~la~~~~------ 289 (396)
++.+..+++++++||+..+.|++|+.+++.+|++..+ ...... ++-.++.+++.+.
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 254 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKT 254 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHS
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccc
Confidence 4567889999999998889999999999999998421 111111 1122555666551
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 290 -GFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 290 -g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
+...+++.++++.+...+..+... .......|+.+|+..++...
T Consensus 255 ~~g~~R~l~~~l~~~~~~~~~~~~~------~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 255 ENIGARRLHTVMERLMDKISFSASD------MNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp CCCTTHHHHHHHHHHSHHHHHHGGG------CTTCEEEECHHHHHHHTCSS
T ss_pred cccCcHHHHHHHHHHHHhhhcCCcc------ccCCEEEEeeHHHHHHHHhh
Confidence 346677888877766554322210 11222359999999988764
No 35
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.83 E-value=1.3e-21 Score=198.21 Aligned_cols=234 Identities=18% Similarity=0.231 Sum_probs=147.4
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc---
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS--- 161 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~--- 161 (396)
.-+++++|++++++.+.+.+....... ..++..++|+||||||||++|++++..++.++..+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~--------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK--------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS--------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc--------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 345679999999999987665421111 114568999999999999999999999999999999876543
Q ss_pred ------hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc-----------CC
Q 016044 162 ------KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT-----------DQ 224 (396)
Q Consensus 162 ------~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----------~~ 224 (396)
.+.|.....+...|..+.... +|+||||+|.+....+.... ..++..++.... ..
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~-~vl~lDEid~l~~~~~~~~~-------~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLN-PVFLLDEIDKMSSDFRGDPS-------SAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp --------------CHHHHHHTTCSSS-EEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccC-CEEEEhhhhhhhhhhccCHH-------HHHHHHHhhhhcceeecccCCeeec
Confidence 455555555666666554444 49999999999765432211 233333432110 01
Q ss_pred CCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhc-----CCCCC---CCCC---HHHHHHhCCC-Cc
Q 016044 225 NARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILK-----GEKVE---ENID---FDYLAGLCEG-FT 292 (396)
Q Consensus 225 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~-----~~~~~---~~~~---l~~la~~~~g-~s 292 (396)
..++++|+|||+++.++++|++|| ..+.++.|+.+++..|++.++. ..... -.++ +..++....+ ..
T Consensus 222 ~~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~ 300 (543)
T 3m6a_A 222 LSKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAG 300 (543)
T ss_dssp CSSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSS
T ss_pred ccceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhc
Confidence 156899999999999999999999 5899999999999999998762 22221 1122 3444443332 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 293 GSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 293 ~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
.++|++.+..+...+..+.... ......|+.+|+.+++...+.
T Consensus 301 vR~L~~~i~~~~~~aa~~~~~~------~~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 301 VRSLERQLAAICRKAAKAIVAE------ERKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTT------CCSCCEECTTTTHHHHCSCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHhc------CCcceecCHHHHHHHhCCccc
Confidence 4566655555554444443321 123356899999999876543
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.81 E-value=1.6e-19 Score=171.35 Aligned_cols=218 Identities=22% Similarity=0.229 Sum_probs=151.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS 161 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~ 161 (396)
..+.+|++++|.+..++.+...+.... ... .++.+++|+||||||||++|+++++.++.+++.++|+.+..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~------~~~---~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAK------ARK---EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHH------HHC---SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHH------ccC---CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 345689999999999999988775311 111 23578999999999999999999999999999999887633
Q ss_pred hhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc------C--------CCCc
Q 016044 162 KWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT------D--------QNAR 227 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~--------~~~~ 227 (396)
. ..+...+..+ ...+++|||||+|.+... ....++..++.... . ...+
T Consensus 77 ~------~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 P------GDLAAILANS-LEEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp H------HHHHHHHTTT-CCTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred h------HHHHHHHHHh-ccCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1 1122222210 135789999999988421 11233333332210 0 1135
Q ss_pred EEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 016044 228 VMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYF 306 (396)
Q Consensus 228 v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~ 306 (396)
+.+|++||.++.+++++++||...+.+++|+.+++..+++.++...... .+..++.++..+.| .++++.++++.+...
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDF 217 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 7899999999999999999998899999999999999999998765443 22236778888876 457777777765433
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 307 SIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
+.. .....|+.+++..++...
T Consensus 218 a~~------------~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 218 AQV------------AGEEVITRERALEALAAL 238 (324)
T ss_dssp STT------------TSCSCCCHHHHHHHHHHH
T ss_pred HHH------------hcCCCCCHHHHHHHHHHh
Confidence 221 122468888888777654
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.81 E-value=7.2e-20 Score=176.83 Aligned_cols=241 Identities=18% Similarity=0.253 Sum_probs=156.2
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhc-CCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch-hhchH
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSH-GKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK-WFGDA 167 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~-~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~-~~g~~ 167 (396)
|+|++.+++.+...+............ .....++.++||+||||||||++|+++|+.++.+|+.++|+.+... +.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 699999999999887543322221111 1112356899999999999999999999999999999999988754 66665
Q ss_pred -HHHHHHHHHHH----HHhCCcEEEEccccccccCCCCCc---hHHHHhhHHHHHHHhhccCc-----------------
Q 016044 168 -QKLVAAVFSLA----YKLQPAIIFIDEVDSFLGQRRTSD---HEALTNMKTEFMALWDGFTT----------------- 222 (396)
Q Consensus 168 -~~~~~~~f~~a----~~~~p~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~----------------- 222 (396)
...+..++..+ ....++||||||+|.+...+.... .....++.+.|+..+++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 45566666654 334568999999999987654332 22223467788888874310
Q ss_pred CCCCcEEEEEecCCC----------CC-----------------------------------CcHHHHhccCCceEeCCC
Q 016044 223 DQNARVMVLAATNRP----------SE-----------------------------------LDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 223 ~~~~~v~vI~atn~~----------~~-----------------------------------l~~~l~~R~~~~i~~~~P 257 (396)
-...++++|+++|.. .. +.++|++||+..+.|++|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 012334455555432 11 789999999999999999
Q ss_pred CHHHHHHHHHH----Hh-------cCCCCCCCCC---HHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 016044 258 DRKERAQILKV----IL-------KGEKVEENID---FDYLAGL--CEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPA 321 (396)
Q Consensus 258 ~~~er~~il~~----~l-------~~~~~~~~~~---l~~la~~--~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~ 321 (396)
+.+++.+|+.. ++ ........++ ++.|++. ...+..++|+++++.+...++.+.... ..
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~-----~~ 331 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM-----ED 331 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC-----CC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc-----cC
Confidence 99999999886 22 1112211122 4555542 234555788888888877766543211 01
Q ss_pred CCCCCCCHHHHHHH
Q 016044 322 AAPRPLSRLDLEKV 335 (396)
Q Consensus 322 ~~~~~i~~~d~~~a 335 (396)
.....|+.+++++.
T Consensus 332 ~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 332 VEKVVIDESVIDGQ 345 (363)
T ss_dssp SEEEECHHHHTTCC
T ss_pred CceeEEcHHHHhCc
Confidence 12345777776654
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=1.4e-18 Score=169.69 Aligned_cols=245 Identities=22% Similarity=0.283 Sum_probs=160.1
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccc-hhhch
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMS-KWFGD 166 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~-~~~g~ 166 (396)
++|+|++++|+.+...+..+.+++..+.......+++++||+||||||||++|+++|..++.+|+.++++.+.. .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36899999999999999887777766654432345789999999999999999999999999999999988877 47763
Q ss_pred -HHHHHHHHHHHHH------------------------------------------------------------------
Q 016044 167 -AQKLVAAVFSLAY------------------------------------------------------------------ 179 (396)
Q Consensus 167 -~~~~~~~~f~~a~------------------------------------------------------------------ 179 (396)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 4555554443320
Q ss_pred ------------------------------------------------------------------------H-hCCcEE
Q 016044 180 ------------------------------------------------------------------------K-LQPAII 186 (396)
Q Consensus 180 ------------------------------------------------------------------------~-~~p~vl 186 (396)
. ...+++
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0 123699
Q ss_pred EEccccccccCCCCCchH-HHHhhHHHHHHHhhccCc------CCCCcEEEEEec----CCCCCCcHHHHhccCCceEeC
Q 016044 187 FIDEVDSFLGQRRTSDHE-ALTNMKTEFMALWDGFTT------DQNARVMVLAAT----NRPSELDEAILRRLPQAFEIG 255 (396)
Q Consensus 187 ~iDEid~l~~~~~~~~~~-~~~~~~~~ll~~l~~~~~------~~~~~v~vI~at----n~~~~l~~~l~~R~~~~i~~~ 255 (396)
++||+|.+..+......+ ....+...|+..+++... .+..++++|+|. +.|.++.|.|+.||+.++.|+
T Consensus 255 ~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~ 334 (444)
T 1g41_A 255 FIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 334 (444)
T ss_dssp EEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred eHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCC
Confidence 999999998664322222 223355678888886321 124578899887 244556689999998889999
Q ss_pred CCCHHHHHHHHHH-----------HhcCCCCC---CCCCHHHHHHh-------CCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 256 MPDRKERAQILKV-----------ILKGEKVE---ENIDFDYLAGL-------CEGFTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 256 ~P~~~er~~il~~-----------~l~~~~~~---~~~~l~~la~~-------~~g~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
.++.++...|+.. .+...... .+-.+..+++. +...-.+.|+.++.........+...
T Consensus 335 ~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~- 413 (444)
T 1g41_A 335 ALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD- 413 (444)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGG-
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccc-
Confidence 9999999999941 11111111 11124444442 34444445555555544443333221
Q ss_pred HhcCCCCCCCCCCCHHHHHHHHHh
Q 016044 315 ERKGKPAAAPRPLSRLDLEKVLTT 338 (396)
Q Consensus 315 ~~~~~~~~~~~~i~~~d~~~al~~ 338 (396)
.......|+.+++.+.+..
T Consensus 414 -----~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 414 -----MNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp -----CTTCEEEECHHHHHHHHTT
T ss_pred -----cCCCeEEEeHHHHHHhcCc
Confidence 1123456888888876654
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=1e-18 Score=172.65 Aligned_cols=206 Identities=21% Similarity=0.287 Sum_probs=140.9
Q ss_pred CcccccccChHHHH---HHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 84 DVEFESIGGLETIK---QALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k---~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+.+|++++|++.++ +.|...+.. +. .+++||+||||||||++|+++++.++.+|+.+++....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~----------~~----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~ 87 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA----------GH----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG 87 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH----------TC----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc----------CC----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 46899999999999 667665542 21 36899999999999999999999999999999875532
Q ss_pred chhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec--
Q 016044 161 SKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT-- 234 (396)
Q Consensus 161 ~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at-- 234 (396)
. ..++.++..+. ...+++|||||+|.+....+. .|+..++. ..+++|++|
T Consensus 88 ~-------~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~-----------~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 88 V-------KEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQD-----------AFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp H-------HHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT------TSCEEEEEESS
T ss_pred H-------HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHH-----------HHHHHHhc------CceEEEecCCC
Confidence 1 22333444333 346799999999998544332 23333432 346677666
Q ss_pred CCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCC-------C-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 016044 235 NRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKV-------E-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYF 306 (396)
Q Consensus 235 n~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~-------~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~ 306 (396)
|....+++++++|| .++.+++|+.+++..+++..+..... . ++..++.++..+.| ..+++.++++.+...
T Consensus 144 n~~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 144 NPSFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp CGGGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred CcccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 44568999999999 68899999999999999999875221 1 11225677777766 556666777665543
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 307 SIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 307 a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
+.. .......|+.+++.+++...
T Consensus 222 a~~----------~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 222 AEV----------DDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp SCB----------CTTSCEECCHHHHHHHHTCC
T ss_pred ccc----------ccCCCCccCHHHHHHHHhhh
Confidence 210 00122569999999988754
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.79 E-value=7.9e-19 Score=173.52 Aligned_cols=220 Identities=17% Similarity=0.274 Sum_probs=145.7
Q ss_pred CCccccccc-C--hHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEE
Q 016044 83 IDVEFESIG-G--LETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINV 154 (396)
Q Consensus 83 ~~~~~~~i~-G--~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i 154 (396)
+..+|++++ | +......+......+ + . +++++|+||||||||++|+++++.+ +.+++.+
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~--~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G--R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T--S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C--C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 456899987 5 344444444433321 1 1 4689999999999999999999987 8889999
Q ss_pred ecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec
Q 016044 155 RISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT 234 (396)
Q Consensus 155 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 234 (396)
++..+...+.+.........|.......+++|||||+|.+.+... ....++..++.... .+..+|+++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~---------~q~~l~~~l~~l~~--~~~~iIitt~ 235 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG---------VQTELFHTFNELHD--SGKQIVICSD 235 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH---------HHHHHHHHHHHHHT--TTCEEEEEES
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH---------HHHHHHHHHHHHHH--CCCeEEEEEC
Confidence 998875544433222111223323222679999999999854311 11133333333221 2345556555
Q ss_pred CCCCC---CcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 016044 235 NRPSE---LDEAILRRLP--QAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSI 308 (396)
Q Consensus 235 n~~~~---l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~ 308 (396)
+.+.. +++++++||. ..+.+++|+.++|.++++..+....+. ++..+..++..+.| +.+++..+++.+...+.
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 55554 7899999995 688999999999999999988643332 22337889988876 78899998888776654
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 309 RELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
.. ..+|+.+++.++++...
T Consensus 315 ~~-------------~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 315 TT-------------GKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HS-------------SSCCCHHHHHHHTSTTT
T ss_pred Hh-------------CCCCCHHHHHHHHHHHh
Confidence 21 13578888888777654
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.79 E-value=5.9e-18 Score=150.70 Aligned_cols=202 Identities=20% Similarity=0.214 Sum_probs=139.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEec
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRI 156 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~ 156 (396)
..+.+|++++|.+..++.+.+.+.. . ...+++|+||||||||++++++++.+ +..++.+++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~----------~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER----------K----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT----------T----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 3456899999999999999887642 1 13459999999999999999999875 456888887
Q ss_pred ccccchhhchHHHHHHHHHHHHH------HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEE
Q 016044 157 SNLMSKWFGDAQKLVAAVFSLAY------KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMV 230 (396)
Q Consensus 157 ~~l~~~~~g~~~~~~~~~f~~a~------~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 230 (396)
+..... ..+...+.... ...+.+|+|||+|.+... ....+...++.. ..++.+
T Consensus 77 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~----~~~~~~ 135 (226)
T 2chg_A 77 SDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY----SKSCRF 135 (226)
T ss_dssp TCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT----TTTEEE
T ss_pred ccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhc----CCCCeE
Confidence 654322 11111111111 135789999999998431 122344444432 346788
Q ss_pred EEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 016044 231 LAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIR 309 (396)
Q Consensus 231 I~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~ 309 (396)
|++||.++.+++++.+||. .+.+++|+.++..++++..+...... ++..+..++..+.| ....+.++++.++..+
T Consensus 136 i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-- 211 (226)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--
T ss_pred EEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--
Confidence 8999999999999999995 89999999999999999888643332 22235667777765 4455555555443221
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 310 ELLDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 310 ~~~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
..|+.+|+++++.
T Consensus 212 ---------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ---------------EVVDADTIYQITA 224 (226)
T ss_dssp ---------------SCBCHHHHHHHHH
T ss_pred ---------------ceecHHHHHHHhc
Confidence 4699999999876
No 42
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.79 E-value=3.5e-19 Score=155.03 Aligned_cols=159 Identities=20% Similarity=0.334 Sum_probs=114.5
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
+.+|++++|.++.++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 45789999999998888776531 235789999999999999999999986 788899
Q ss_pred Eeccccc--chhhchHHHHHHHHHHHHHH-hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEE
Q 016044 154 VRISNLM--SKWFGDAQKLVAAVFSLAYK-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMV 230 (396)
Q Consensus 154 i~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 230 (396)
+++..+. ..+.+.....+..++..+.. ..+.+|+|||+|.+.............. .+...++ ..++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~---~l~~~~~------~~~~~~ 154 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGN---MLKPALA------RGELHC 154 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHH---HHHHHHH------TTSCCE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHH---HHHHhhc------cCCeEE
Confidence 9987765 34456666677777775543 4567999999999975542211111111 2222222 345778
Q ss_pred EEecCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHH
Q 016044 231 LAATNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQIL 266 (396)
Q Consensus 231 I~atn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il 266 (396)
|++||.+. .+++++++||. .+.+++|+.+++.+++
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888765 68999999995 7999999999998875
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=6.7e-19 Score=163.13 Aligned_cols=206 Identities=19% Similarity=0.214 Sum_probs=130.7
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc-chhhch
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM-SKWFGD 166 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~-~~~~g~ 166 (396)
..++|.+...+.+....... ...+... ...+++++||+||||||||++|+++|+..+.+|+.+++++.. +...+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~-~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNS-DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHC-SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhcc-CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 45677766655554421100 0112111 134568999999999999999999999999999999887532 222223
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcH-HHH
Q 016044 167 AQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDE-AIL 245 (396)
Q Consensus 167 ~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~-~l~ 245 (396)
....++.+|..+....+++|||||+|.+++.+.... .....+...+...+++.. ..+.++++|+|||.++.+++ .+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~~~~~~~-~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKAP-PQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHHTTCCC-STTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHHHhcCcc-CCCCCEEEEEecCChhhcchhhhh
Confidence 345677788888777789999999999976543221 111233344555555443 23567889999999988887 677
Q ss_pred hccCCceEeCCCCH-HHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCC----cHHHHHHHHHHH
Q 016044 246 RRLPQAFEIGMPDR-KERAQILKVILKGEKVEENIDFDYLAGLCEGF----TGSDLLEVCKQA 303 (396)
Q Consensus 246 ~R~~~~i~~~~P~~-~er~~il~~~l~~~~~~~~~~l~~la~~~~g~----s~~di~~l~~~A 303 (396)
+||+..+.+|+++. ++...++.. ...+ .+.++..++..+.|| ...++.++++.|
T Consensus 187 ~rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 187 NAFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred cccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 89988887766554 444444433 2222 233467778888876 344555555444
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.78 E-value=4.2e-18 Score=161.81 Aligned_cols=197 Identities=21% Similarity=0.285 Sum_probs=131.7
Q ss_pred CCccccccc-C--hHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 83 IDVEFESIG-G--LETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 83 ~~~~~~~i~-G--~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
+..+|++++ | +......+...+..+ ...+++++|+||||||||++|+++++.+ +.+++.+++
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 456899987 4 555555665554321 1135789999999999999999999988 899999999
Q ss_pred ccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 157 SNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 157 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
.++...+.+.........|.... ..+++|||||+|.+...+. .. ..++..++.... ....+++++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~--~~-------~~l~~~l~~~~~--~~~~iii~~~~~ 141 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKER--TQ-------IEFFHIFNTLYL--LEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHH--HH-------HHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChH--HH-------HHHHHHHHHHHH--CCCeEEEEecCC
Confidence 88765554443322222233222 2479999999999854211 11 123333322211 234566677776
Q ss_pred CC---CCcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 016044 237 PS---ELDEAILRRLP--QAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYF 306 (396)
Q Consensus 237 ~~---~l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~ 306 (396)
+. .+++++++||. ..+.+++ +.+++..+++..+...... ++..++.++..+ | ..+++..+++.+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 65 68999999996 5688998 9999999999998754432 222367788888 5 667788777776654
No 45
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.77 E-value=6.7e-18 Score=163.55 Aligned_cols=224 Identities=17% Similarity=0.143 Sum_probs=150.4
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEec
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRI 156 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~ 156 (396)
..++++|.++.++.+..++...+ . ...+.+++|+||||||||++++++++.+ +.+++.++|
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~------~----~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPAL------R----GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGT------S----SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH------c----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34889999999999987653211 0 1235789999999999999999999987 888999998
Q ss_pred ccccchh----------------hch-HHHHHHHHHHHHHHh-CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhh
Q 016044 157 SNLMSKW----------------FGD-AQKLVAAVFSLAYKL-QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD 218 (396)
Q Consensus 157 ~~l~~~~----------------~g~-~~~~~~~~f~~a~~~-~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 218 (396)
....+.. .+. .......++...... .+.+|||||+|.+.... . ....+..++..+.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--~----~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--G----GQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--T----HHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--C----CChHHHhHhhchh
Confidence 7643321 011 223344444433322 36799999999985432 0 1122233333333
Q ss_pred ccCcCCCCcEEEEEecCCC---CCCcHHHHhccCC-ceEeCCCCHHHHHHHHHHHhcC--CCCC-CCCCHHHHHHhCC--
Q 016044 219 GFTTDQNARVMVLAATNRP---SELDEAILRRLPQ-AFEIGMPDRKERAQILKVILKG--EKVE-ENIDFDYLAGLCE-- 289 (396)
Q Consensus 219 ~~~~~~~~~v~vI~atn~~---~~l~~~l~~R~~~-~i~~~~P~~~er~~il~~~l~~--~~~~-~~~~l~~la~~~~-- 289 (396)
.... +.++.+|++||.+ +.+++.+.+||.. .+.+++|+.+++.++++..+.. .... .+..++.++..+.
T Consensus 161 ~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 2210 4568899999987 6789999999976 7899999999999999988753 1111 2333667777776
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 290 -GFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 290 -g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
| .+..+.++|+.|+..+..+ ....|+.+|+..++....
T Consensus 239 ~G-~~r~~~~~l~~a~~~a~~~------------~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 239 HG-DARRALDLLRVAGEIAERR------------REERVRREHVYSARAEIE 277 (387)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHT------------TCSCBCHHHHHHHHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHHHHc------------CCCCcCHHHHHHHHHHHh
Confidence 6 5567778888887655432 125689999999987763
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.77 E-value=2.1e-18 Score=171.89 Aligned_cols=184 Identities=18% Similarity=0.297 Sum_probs=127.0
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
+-+|++|+|.++.++.+.+.+.. ...+++||+||||||||++|+++|..+ +.+++.
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 45789999999999998776541 224689999999999999999999986 788999
Q ss_pred EecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 154 VRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 154 i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
++++ .++.|+.+..+..+|..+....++||||| +.. . ..+.++..+. .+.+.+|++
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~~-----~----a~~~L~~~L~------~g~v~vI~a 297 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AAI-----D----ASNILKPSLA------RGELQCIGA 297 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT------SSSCEEEEE
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cch-----h----HHHHHHHhhc------CCCEEEEec
Confidence 8887 66777777888889998888888999999 100 0 0111211111 456899999
Q ss_pred cCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCC--C---CHHHHHHhCCCC-----cHHHHHH
Q 016044 234 TNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEEN--I---DFDYLAGLCEGF-----TGSDLLE 298 (396)
Q Consensus 234 tn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~--~---~l~~la~~~~g~-----s~~di~~ 298 (396)
||.++ .+++++++||. .+.|+.|+.+++..|++.++..+....+ + .+..++..+.+| .+.....
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 99887 68999999994 6999999999999999998876322111 2 245555554443 3446667
Q ss_pred HHHHHHHH
Q 016044 299 VCKQAAYF 306 (396)
Q Consensus 299 l~~~A~~~ 306 (396)
+++.|...
T Consensus 377 ll~~a~~~ 384 (468)
T 3pxg_A 377 LIDEAGSK 384 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776643
No 47
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=1.9e-18 Score=174.29 Aligned_cols=195 Identities=21% Similarity=0.256 Sum_probs=126.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccc-ChhhhhcCCC--CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLR-RPELFSHGKL--LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~-~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
..+.+|++|+|++.+++.+.+++..... .+..|...+. ..+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3456899999999999999998864221 1122222111 124679999999999999999999999999999999988
Q ss_pred ccchhhchHHHH-------HHHHHHHH-----HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCC
Q 016044 159 LMSKWFGDAQKL-------VAAVFSLA-----YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNA 226 (396)
Q Consensus 159 l~~~~~g~~~~~-------~~~~f~~a-----~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 226 (396)
+........... +...|..+ ....++||||||+|.+...... ....+...++. ...
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~--------~l~~L~~~l~~----~~~ 180 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG--------GVGQLAQFCRK----TST 180 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT--------HHHHHHHHHHH----CSS
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH--------HHHHHHHHHHh----cCC
Confidence 765432211100 11122222 1245689999999999664321 12233343432 133
Q ss_pred cEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC
Q 016044 227 RVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEG 290 (396)
Q Consensus 227 ~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g 290 (396)
++++++++.....++ .+.+|+ ..+.|++|+.+++.+++...+...... ++..+..+++.+.|
T Consensus 181 ~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 181 PLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp CEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred CEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 455555544434454 355555 789999999999999998887543332 22347788888765
No 48
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.76 E-value=1.9e-17 Score=149.70 Aligned_cols=205 Identities=17% Similarity=0.155 Sum_probs=136.9
Q ss_pred CcccccccCh---HHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 84 DVEFESIGGL---ETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 84 ~~~~~~i~G~---~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
..+|++++|. +.+.+.+..++.. ..+++++|+||||||||++|+++++++ +.+++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4689999873 4666666555431 135789999999999999999999876 4778889988
Q ss_pred cccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcE-EEEEecCC
Q 016044 158 NLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARV-MVLAATNR 236 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v-~vI~atn~ 236 (396)
++........ . ....+.+|+|||+|.+..... ....++..++.... ...+ +|++++..
T Consensus 90 ~~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~~---------~~~~l~~~l~~~~~--~~~~~ii~~~~~~ 148 (242)
T 3bos_A 90 IHASISTALL--------E--GLEQFDLICIDDVDAVAGHPL---------WEEAIFDLYNRVAE--QKRGSLIVSASAS 148 (242)
T ss_dssp GGGGSCGGGG--------T--TGGGSSEEEEETGGGGTTCHH---------HHHHHHHHHHHHHH--HCSCEEEEEESSC
T ss_pred HHHHHHHHHH--------H--hccCCCEEEEeccccccCCHH---------HHHHHHHHHHHHHH--cCCCeEEEEcCCC
Confidence 7655432111 1 113568999999999843210 01122232222211 1223 44444444
Q ss_pred CC---CCcHHHHhccC--CceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Q 016044 237 PS---ELDEAILRRLP--QAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE 310 (396)
Q Consensus 237 ~~---~l~~~l~~R~~--~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~ 310 (396)
+. .+.+++.+||. ..+.+++|+.+++.+++..++...... .+..++.++..+.| +.+++.++++.+...+..+
T Consensus 149 ~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~ 227 (242)
T 3bos_A 149 PMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH 227 (242)
T ss_dssp TTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh
Confidence 43 45689999986 789999999999999999988644432 22236678888876 7788888888887766432
Q ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 311 LLDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 311 ~~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
...|+.+++.+++.
T Consensus 228 -------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 -------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp -------------TCCCCHHHHHHHHT
T ss_pred -------------CCCCcHHHHHHHhh
Confidence 15699999998874
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.76 E-value=4.4e-18 Score=153.48 Aligned_cols=202 Identities=23% Similarity=0.275 Sum_probs=140.1
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------------ 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------------ 150 (396)
.+..|++++|.+..++.+...+.. + ..++.++|+||||+|||++++++++.++..
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~----------~---~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL----------G---RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH----------T---CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 456789999999999999877642 1 124579999999999999999999876432
Q ss_pred ------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 151 ------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 151 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
++.++... ......+..++.... ...+.+|+|||+|.+.. .....++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~ 147 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 147 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHH
Confidence 22222211 011222333333221 22468999999998721 1223445
Q ss_pred HHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcH
Q 016044 215 ALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 215 ~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 293 (396)
..++. .+.++.+|++||.+..+++++.+|+ ..+.+++|+.++..++++..+...... ++..++.+++.+.| .+
T Consensus 148 ~~l~~----~~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 148 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHS----CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHhc----CCCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 55543 2456889999999889999999997 889999999999999999988654332 22236778888887 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Q 016044 294 SDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVL 336 (396)
Q Consensus 294 ~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al 336 (396)
+.+.++++.|...+ ...|+.+|+++++
T Consensus 222 ~~~~~~~~~~~~~~----------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 222 RDALSLTDQAIASG----------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHTTT----------------TSSBCHHHHHHHS
T ss_pred HHHHHHHHHHHhcc----------------CceecHHHHHHHh
Confidence 88888887763211 1369999998875
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=1.5e-17 Score=175.60 Aligned_cols=224 Identities=20% Similarity=0.270 Sum_probs=156.5
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEE
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFINV 154 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~i 154 (396)
-.|++++|.+..++.+.+.+. ...+.+++|+||||||||++|++++..+ +..++.+
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~--------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC--------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT--------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCCCCccCCHHHHHHHHHHHh--------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 578999999999998877553 1235789999999999999999999976 6678888
Q ss_pred eccccc--chhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEE
Q 016044 155 RISNLM--SKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLA 232 (396)
Q Consensus 155 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 232 (396)
++..+. .++.|..+..+..++..+....+++|||||+|.+.+........ . .....+..+.. ...+.+|+
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~--~----~~~~~L~~~l~--~~~~~~I~ 320 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--V----DAANLIKPLLS--SGKIRVIG 320 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--H----HHHHHHSSCSS--SCCCEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch--H----HHHHHHHHHHh--CCCeEEEE
Confidence 887776 45778889999999998877778999999999997765432111 1 22223333322 45678899
Q ss_pred ecCCC-----CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC----CCC-CCCCHHHHHHhCCC-----CcHHHHH
Q 016044 233 ATNRP-----SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE----KVE-ENIDFDYLAGLCEG-----FTGSDLL 297 (396)
Q Consensus 233 atn~~-----~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~----~~~-~~~~l~~la~~~~g-----~s~~di~ 297 (396)
+||.+ ..+++++.+||. .+.++.|+.+++.++++.++... ... .+..+..++..+.| +.+..+.
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 99864 356889999995 79999999999999999877531 111 11124445554443 4556777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 298 EVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 298 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
.++++|...+... ........++.+|+..++...
T Consensus 400 ~lld~a~~~~~~~--------~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 400 DVIDEAGARARLM--------PVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHS--------SSCCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--------cccccCCccCHHHHHHHHHHh
Confidence 7887765332210 011223579999999998875
No 51
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.75 E-value=3.9e-18 Score=165.44 Aligned_cols=243 Identities=17% Similarity=0.230 Sum_probs=145.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhhh----------------cCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFS----------------HGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~----------------~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
.|+|++.+|+.|...+..+..+..... ......++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999988754333322100 0011234678999999999999999999999999999
Q ss_pred EEeccccc-chhhchH-HHHHHHHHHHH----HHhCCcEEEEccccccccCCCCCch---HHHHhhHHHHHHHhhccCc-
Q 016044 153 NVRISNLM-SKWFGDA-QKLVAAVFSLA----YKLQPAIIFIDEVDSFLGQRRTSDH---EALTNMKTEFMALWDGFTT- 222 (396)
Q Consensus 153 ~i~~~~l~-~~~~g~~-~~~~~~~f~~a----~~~~p~vl~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~l~~~~~- 222 (396)
.++|..+. ..+.|.. +..+...+..+ ....++||||||+|.+...+..... .....+.+.|+..+++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3344443 33344444322 2346799999999999765322110 0111245567777764310
Q ss_pred ----------------CCCCcEEEEEecCC-----------------------------------------CCCCcHHHH
Q 016044 223 ----------------DQNARVMVLAATNR-----------------------------------------PSELDEAIL 245 (396)
Q Consensus 223 ----------------~~~~~v~vI~atn~-----------------------------------------~~~l~~~l~ 245 (396)
-...++++|+++|. ...+.++++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 00144577777762 113568899
Q ss_pred hccCCceEeCCCCHHHHHHHHHH----Hhc-------CCCCC---CCCCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHH
Q 016044 246 RRLPQAFEIGMPDRKERAQILKV----ILK-------GEKVE---ENIDFDYLAGLCE--GFTGSDLLEVCKQAAYFSIR 309 (396)
Q Consensus 246 ~R~~~~i~~~~P~~~er~~il~~----~l~-------~~~~~---~~~~l~~la~~~~--g~s~~di~~l~~~A~~~a~~ 309 (396)
+||+..+.|++++.++...++.. ++. ..... ++-.++.|+..+. ....+++.++++.+...++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99998999999999999998862 111 11111 1112455555532 23557888888877776665
Q ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 310 ELLDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 310 ~~~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
+.... ......|+.+++.++..
T Consensus 342 ~~~~~------~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 342 DLPKL------KGSEVRITKDCVLKQAE 363 (376)
T ss_dssp TGGGG------TTSEEEECHHHHTTSSC
T ss_pred hccCC------CCCEEEEeHHHhcCCCC
Confidence 53321 11234688888876443
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.75 E-value=1.1e-17 Score=159.26 Aligned_cols=159 Identities=19% Similarity=0.231 Sum_probs=107.3
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc--chh
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM--SKW 163 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~--~~~ 163 (396)
.+++++|++++++.+...+.. ..++||+||||||||++|+++++.++.+++.+++..-. ...
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 457899999999888765532 25799999999999999999999999999998874211 111
Q ss_pred hchHH-HHHHHHHHHHHHhC---CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-------CcCCCCcEEEEE
Q 016044 164 FGDAQ-KLVAAVFSLAYKLQ---PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF-------TTDQNARVMVLA 232 (396)
Q Consensus 164 ~g~~~-~~~~~~f~~a~~~~---p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~v~vI~ 232 (396)
.|... ......+ ....+ .++|||||+|.+... ....++..++.. ....+.++++|+
T Consensus 89 ~g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~~-----------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 89 IGTMIYNQHKGNF--EVKKGPVFSNFILADEVNRSPAK-----------VQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp HEEEEEETTTTEE--EEEECTTCSSEEEEETGGGSCHH-----------HHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred CCceeecCCCCce--EeccCcccccEEEEEccccCCHH-----------HHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 11000 0000000 00011 279999999987322 122333333321 112345688889
Q ss_pred ecCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC
Q 016044 233 ATNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE 273 (396)
Q Consensus 233 atn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~ 273 (396)
|+|+.+ .+++++++||...+.++.|+.+++.+|++..+...
T Consensus 156 t~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred ecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence 988654 38999999997789999999999999999988653
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.75 E-value=1.7e-17 Score=156.37 Aligned_cols=210 Identities=16% Similarity=0.210 Sum_probs=139.4
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh-
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW- 163 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~- 163 (396)
++++|++.+++.+...+..... .-.....+..+++|+||||||||++|++++..+ +.+++.++|+.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~-----~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARA-----GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-----TCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhcCCHHHHHHHHHHHHHHHhc-----CCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 3578999999999887753210 000112234579999999999999999999987 5679999998765432
Q ss_pred ----hchHH-----HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCC-------CCc
Q 016044 164 ----FGDAQ-----KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQ-------NAR 227 (396)
Q Consensus 164 ----~g~~~-----~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-------~~~ 227 (396)
+|... .....+........+++|||||+|.+.. .....++..++...... -.+
T Consensus 92 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 11000 0001122223334458999999998832 23335555554322111 136
Q ss_pred EEEEEecCC--------------------------CCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC-------C
Q 016044 228 VMVLAATNR--------------------------PSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE-------K 274 (396)
Q Consensus 228 v~vI~atn~--------------------------~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~-------~ 274 (396)
+++|+|||. ...+++++++||+..+.+++|+.+++..|++.++... .
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 779999998 4468899999999999999999999999999877532 1
Q ss_pred CC---CCCCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHHHHH
Q 016044 275 VE---ENIDFDYLAGLCE--GFTGSDLLEVCKQAAYFSIRELLD 313 (396)
Q Consensus 275 ~~---~~~~l~~la~~~~--g~s~~di~~l~~~A~~~a~~~~~~ 313 (396)
.. .+..++.++...- ..+.++|+++++.+...++.+.+.
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 11 1122556666554 456789999999988887776553
No 54
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=5.5e-17 Score=157.28 Aligned_cols=215 Identities=17% Similarity=0.157 Sum_probs=144.1
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-----------CCcEEEEe
Q 016044 87 FESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-----------GAVFINVR 155 (396)
Q Consensus 87 ~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-----------~~~~~~i~ 155 (396)
.++++|.++.++.+...+...+ .+ ..+++++|+||||||||++|+++++++ +.+++.++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~-------~~---~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFV-------KN---EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHH-------TT---CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHH-------cC---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4789999999999988775321 11 235789999999999999999999987 89999999
Q ss_pred ccccc-chh------h-----------ch-HHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHH
Q 016044 156 ISNLM-SKW------F-----------GD-AQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMAL 216 (396)
Q Consensus 156 ~~~l~-~~~------~-----------g~-~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 216 (396)
|.... ... . +. ....+..++...... +.+|+|||+|.+...... . .++..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~-------~---~~l~~ 157 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGG-------D---IVLYQ 157 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTS-------H---HHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCC-------c---eeHHH
Confidence 87653 110 0 00 122333344333332 349999999998543211 1 10211
Q ss_pred hhccCcCCCCcEEEEEecCCC---CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcC-CC-CC-CCCCHHHHHHhCCC
Q 016044 217 WDGFTTDQNARVMVLAATNRP---SELDEAILRRLPQAFEIGMPDRKERAQILKVILKG-EK-VE-ENIDFDYLAGLCEG 290 (396)
Q Consensus 217 l~~~~~~~~~~v~vI~atn~~---~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~-~~-~~-~~~~l~~la~~~~g 290 (396)
+.... .++.+|++||.+ +.+++++.+||...+.|++|+.++..++++..+.. .. .. .+..++.+++.+.+
T Consensus 158 l~~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 158 LLRSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp HHTSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred HhcCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 21111 568899999987 67899999999789999999999999999998752 11 11 22235667776662
Q ss_pred C--cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 291 F--TGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 291 ~--s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
. ....+.++|+.|+..+. ....|+.+|+..++....
T Consensus 234 ~~G~~r~a~~~l~~a~~~a~--------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQLAS--------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCCHHHHHHHHHHHHHHTT--------------SSSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc--------------CCCccCHHHHHHHHHHHh
Confidence 1 34456667777654432 125689999999887764
No 55
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.74 E-value=2.4e-17 Score=156.53 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=123.4
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK 162 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~ 162 (396)
.+.+|++++|++++++.+..++.. -..++.+|++||||||||++|++++++++.+++.+++++..
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-- 85 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-- 85 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC--
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC--
Confidence 456899999999999999887751 12356788899999999999999999999999999987742
Q ss_pred hhchHHHHHHHHHHHHHHh-----CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC
Q 016044 163 WFGDAQKLVAAVFSLAYKL-----QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP 237 (396)
Q Consensus 163 ~~g~~~~~~~~~f~~a~~~-----~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 237 (396)
...++..+...... .+++|||||+|.+.+. .....++..++.. +.++.+|++||.+
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~----------~~~~~L~~~le~~----~~~~~iI~~~n~~ 146 (324)
T 3u61_B 86 -----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA----------ESQRHLRSFMEAY----SSNCSIIITANNI 146 (324)
T ss_dssp -----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH----------HHHHHHHHHHHHH----GGGCEEEEEESSG
T ss_pred -----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH----------HHHHHHHHHHHhC----CCCcEEEEEeCCc
Confidence 22233333322222 4689999999998411 1122344444432 3457889999999
Q ss_pred CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHh-------cCCCCC-CC-CCHHHHHHhCCCC
Q 016044 238 SELDEAILRRLPQAFEIGMPDRKERAQILKVIL-------KGEKVE-EN-IDFDYLAGLCEGF 291 (396)
Q Consensus 238 ~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l-------~~~~~~-~~-~~l~~la~~~~g~ 291 (396)
..+++++++|| ..+.|++|+.+++.++++.+. ...... ++ ..++.++..+.|-
T Consensus 147 ~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd 208 (324)
T 3u61_B 147 DGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPD 208 (324)
T ss_dssp GGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSC
T ss_pred cccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCC
Confidence 99999999999 689999999999876655443 222222 22 3366777777663
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.73 E-value=1.4e-17 Score=159.57 Aligned_cols=221 Identities=19% Similarity=0.257 Sum_probs=129.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-------c----
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA-------V---- 150 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~-------~---- 150 (396)
.++.+|++++|++.+++.+...... ....++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~ 83 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP 83 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccc
Confidence 3467899999999988775443321 11346999999999999999999998863 2
Q ss_pred ----------------------EEEEecccccchhhchHHHHHHHHHHHH---------HHhCCcEEEEccccccccCCC
Q 016044 151 ----------------------FINVRISNLMSKWFGDAQKLVAAVFSLA---------YKLQPAIIFIDEVDSFLGQRR 199 (396)
Q Consensus 151 ----------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a---------~~~~p~vl~iDEid~l~~~~~ 199 (396)
++.+..........|... +...+... ....+++|||||+|.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-- 159 (350)
T 1g8p_A 84 NVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-- 159 (350)
T ss_dssp SGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--
T ss_pred ccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--
Confidence 111111100011111100 00111111 1124689999999998432
Q ss_pred CCchHHHHhhHHHHHHHhhc----cCc-----CCCCcEEEEEecCCCC-CCcHHHHhccCCceEeCCC-CHHHHHHHHHH
Q 016044 200 TSDHEALTNMKTEFMALWDG----FTT-----DQNARVMVLAATNRPS-ELDEAILRRLPQAFEIGMP-DRKERAQILKV 268 (396)
Q Consensus 200 ~~~~~~~~~~~~~ll~~l~~----~~~-----~~~~~v~vI~atn~~~-~l~~~l~~R~~~~i~~~~P-~~~er~~il~~ 268 (396)
....++..++. +.. ..+.++++|+++|..+ .+++++++||+..+.+++| +.+++.+|++.
T Consensus 160 ---------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 160 ---------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ---------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 12233343332 111 1123789999999744 8999999999878999999 67778788876
Q ss_pred Hhc-------------------------------CCCCCCCCCHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHHHHHH
Q 016044 269 ILK-------------------------------GEKVEENIDFDYLAGLCEG---FTGSDLLEVCKQAAYFSIRELLDE 314 (396)
Q Consensus 269 ~l~-------------------------------~~~~~~~~~l~~la~~~~g---~s~~di~~l~~~A~~~a~~~~~~~ 314 (396)
.+. ...+. +-.++.++..+.+ -+.+.+.++++.|...|..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~---- 305 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALE---- 305 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT----
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc----
Confidence 321 11111 1113333333322 14566666666655544422
Q ss_pred HhcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 315 ERKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 315 ~~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
....|+.+|+..++..+-.+
T Consensus 306 --------~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 306 --------GATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp --------TCSBCCHHHHHHHHHHHHGG
T ss_pred --------CCCcCCHHHHHHHHHHHHhh
Confidence 11459999999999876554
No 57
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.73 E-value=1.3e-17 Score=144.51 Aligned_cols=151 Identities=19% Similarity=0.370 Sum_probs=108.2
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
+.+|++++|.+...+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 34789999999988888765531 225789999999999999999999986 778888
Q ss_pred Eecccccc--hhhchHHHHHHHHHHHHHHh-CCcEEEEccccccccCCC-CCchHHHHhhHHHHHHHhhccCcCCCCcEE
Q 016044 154 VRISNLMS--KWFGDAQKLVAAVFSLAYKL-QPAIIFIDEVDSFLGQRR-TSDHEALTNMKTEFMALWDGFTTDQNARVM 229 (396)
Q Consensus 154 i~~~~l~~--~~~g~~~~~~~~~f~~a~~~-~p~vl~iDEid~l~~~~~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 229 (396)
+++..+.. .+.+.....+..++..+... .+.+|||||+|.+.+.+. .... ....+.+...++ ..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~~l~~~~~------~~~~~ 154 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA---LDAGNILKPMLA------RGELR 154 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS---CCTHHHHHHHHH------TTCSC
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc---hHHHHHHHHHHh------cCCee
Confidence 88877652 24455566677777766654 567999999999975443 1111 111222223232 34578
Q ss_pred EEEecCCCC-----CCcHHHHhccCCceEeCCCC
Q 016044 230 VLAATNRPS-----ELDEAILRRLPQAFEIGMPD 258 (396)
Q Consensus 230 vI~atn~~~-----~l~~~l~~R~~~~i~~~~P~ 258 (396)
+|+++|.+. .+++++++||. .+.+++|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 899998764 68999999995 58999885
No 58
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=1.2e-16 Score=153.14 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=139.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC------CcEEEEe
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG------AVFINVR 155 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~------~~~~~i~ 155 (396)
..+.+|++++|++++++.+...+.. + ...+++|+||||||||++|+++++.++ ..++.++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~~----------~----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLKS----------A----NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTTC----------T----TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHhc----------C----CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 3466899999999999998776531 1 123499999999999999999998754 4578888
Q ss_pred cccccchhhchHHHHHHHHHHH-----------H-HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC
Q 016044 156 ISNLMSKWFGDAQKLVAAVFSL-----------A-YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD 223 (396)
Q Consensus 156 ~~~l~~~~~g~~~~~~~~~f~~-----------a-~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 223 (396)
+++..+. +.....+...... . ....+.+|+|||+|.+... ..+.++..++..
T Consensus 97 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le~~--- 160 (353)
T 1sxj_D 97 ASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMETY--- 160 (353)
T ss_dssp SSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHT---
T ss_pred cccccch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHHhc---
Confidence 8764221 1111111111000 0 0123469999999998432 112444445432
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 224 QNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 224 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
.....+|.++|.+..+.+++++|+ ..+.+++|+.++...+++..+...... ++..++.++..+.|. .+.+.++++.
T Consensus 161 -~~~~~~il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~ 237 (353)
T 1sxj_D 161 -SGVTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQS 237 (353)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHH
T ss_pred -CCCceEEEEeCchhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 334677778899999999999999 589999999999999999988655433 223367788888873 4555555555
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHh
Q 016044 303 AAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTT 338 (396)
Q Consensus 303 A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 338 (396)
++..+-+. + ....|+.+|+..++..
T Consensus 238 ~~~~~~~~-------~----~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 238 ASKGAQYL-------G----DGKNITSTQVEELAGV 262 (353)
T ss_dssp THHHHHHH-------C----SCCCCCHHHHHHHHTC
T ss_pred HHHhcCCC-------c----cCccccHHHHHHHhCC
Confidence 54432211 0 0025788887776654
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=2.2e-17 Score=176.05 Aligned_cols=200 Identities=20% Similarity=0.307 Sum_probs=129.6
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
+-+|++++|.++.++.+.+.+.. +..++++|+||||||||++|+++|+.+ +.+++.
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 45789999999988888776531 224679999999999999999999987 889999
Q ss_pred Eeccccc--chhhchHHHHHHHHHHHHHHh-CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEE
Q 016044 154 VRISNLM--SKWFGDAQKLVAAVFSLAYKL-QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMV 230 (396)
Q Consensus 154 i~~~~l~--~~~~g~~~~~~~~~f~~a~~~-~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 230 (396)
++++.+. .++.|+.+..+..++..+... .++||||||+|.+.+............ .+...+. ...+.+
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~---~L~~~l~------~~~i~~ 302 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGN---MLKPALA------RGELRL 302 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH------TTCCCE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHH---HHHHHHh------CCCeEE
Confidence 9998886 567788888999999988765 678999999999976543322111112 2222232 345778
Q ss_pred EEecCCCC----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC----CCC-CCCCHHHHHHhC-----CCCcHHHH
Q 016044 231 LAATNRPS----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE----KVE-ENIDFDYLAGLC-----EGFTGSDL 296 (396)
Q Consensus 231 I~atn~~~----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~----~~~-~~~~l~~la~~~-----~g~s~~di 296 (396)
|++||.++ .+++++.+||. .+.++.|+.+++.+|++.++... ... .+..+..++..+ ..|.+...
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 89988764 47899999995 59999999999999998776532 111 111244444443 35667777
Q ss_pred HHHHHHHHHHH
Q 016044 297 LEVCKQAAYFS 307 (396)
Q Consensus 297 ~~l~~~A~~~a 307 (396)
..++++|+...
T Consensus 382 i~lldea~a~~ 392 (854)
T 1qvr_A 382 IDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666543
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=4e-17 Score=172.18 Aligned_cols=184 Identities=20% Similarity=0.298 Sum_probs=128.7
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFIN 153 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~ 153 (396)
+-.+++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hCCCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 35788999999999998776541 235789999999999999999999986 788888
Q ss_pred EecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 154 VRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 154 i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
+++ ..++.|+.+..++.+|..+....++||||| +.. ...+.++..++ .+.+.+|++
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~~---------~~~~~L~~~l~------~~~v~~I~a 297 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AAI---------DASNILKPSLA------RGELQCIGA 297 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT------SSSCEEEEE
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cch---------hHHHHHHHHHh------cCCEEEEeC
Confidence 887 556778888889999999988889999999 000 01111211111 456899999
Q ss_pred cCCCC-----CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCC--CC---HHHHHHhC-----CCCcHHHHHH
Q 016044 234 TNRPS-----ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEEN--ID---FDYLAGLC-----EGFTGSDLLE 298 (396)
Q Consensus 234 tn~~~-----~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~--~~---l~~la~~~-----~g~s~~di~~ 298 (396)
||..+ .++++++||| ..+.|+.|+.+++.+||+.++.......+ ++ +..++..+ .++.+.....
T Consensus 298 t~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 99888 7899999999 67999999999999999988766432222 22 33444433 3566677777
Q ss_pred HHHHHHHH
Q 016044 299 VCKQAAYF 306 (396)
Q Consensus 299 l~~~A~~~ 306 (396)
+++.|+..
T Consensus 377 ll~~a~~~ 384 (758)
T 3pxi_A 377 LIDEAGSK 384 (758)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 61
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=5.5e-16 Score=149.85 Aligned_cols=223 Identities=13% Similarity=0.162 Sum_probs=148.1
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc------CCcEEEEeccc
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES------GAVFINVRISN 158 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~------~~~~~~i~~~~ 158 (396)
...++++|.++.++.+.+.+...+ . ...+..++|+||||||||++++++++.+ +.+++.++|..
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~------~----~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLY------R----EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGG------G----TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHH------c----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 345889999999999977654211 1 1235689999999999999999999987 88999999764
Q ss_pred ccchh----------------hc-hHHHHHHHHHHHHHHhC-CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc
Q 016044 159 LMSKW----------------FG-DAQKLVAAVFSLAYKLQ-PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF 220 (396)
Q Consensus 159 l~~~~----------------~g-~~~~~~~~~f~~a~~~~-p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 220 (396)
..... .+ ........++....... |.+|+|||+|.+...... ..+..++..++..
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~ 159 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV 159 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc
Confidence 32210 01 12333444444444333 789999999998654311 2233455555433
Q ss_pred CcCCCCcEEEEEecCCC---CCCcHHHHhccCC-ceEeCCCCHHHHHHHHHHHhcCCCCCCCC---CHHHHHHhCC---C
Q 016044 221 TTDQNARVMVLAATNRP---SELDEAILRRLPQ-AFEIGMPDRKERAQILKVILKGEKVEENI---DFDYLAGLCE---G 290 (396)
Q Consensus 221 ~~~~~~~v~vI~atn~~---~~l~~~l~~R~~~-~i~~~~P~~~er~~il~~~l~~~~~~~~~---~l~~la~~~~---g 290 (396)
...++.+|++||.+ ..+++.+.+||.. .+.+++++.++..++++..+........+ .+..++..+. |
T Consensus 160 ---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 ---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp ---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 24578889999876 4678889999864 89999999999999999876521111112 2455666665 5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 291 FTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 291 ~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
.+..+.++|+.|+..+..+ ....|+.+|+..++....
T Consensus 237 -~~r~~~~ll~~a~~~a~~~------------~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 237 -DARRALDLLRVSGEIAERM------------KDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp -CHHHHHHHHHHHHHHHHHT------------TCSSCCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhc------------CCCccCHHHHHHHHHHHh
Confidence 4556667888876655432 124689999998887654
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.70 E-value=1.8e-16 Score=167.22 Aligned_cols=205 Identities=13% Similarity=0.172 Sum_probs=139.3
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhh
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWF 164 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~ 164 (396)
++++|++.+++.+.+.+..... .......|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~-----~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA-----GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT-----TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHc-----ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 5689999999999887753110 000111222369999999999999999999987 68999999999987765
Q ss_pred chHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc-------CCCCcEEEEEecCCC
Q 016044 165 GDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT-------DQNARVMVLAATNRP 237 (396)
Q Consensus 165 g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~v~vI~atn~~ 237 (396)
... ..++...+...++||||||+|.+.. .+.+.|+..++.... ....++++|+|||.+
T Consensus 566 ~~~----~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 566 TSG----GQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ccc----chhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 541 1223334455668999999998722 233455555554221 123467999999965
Q ss_pred CC------------CcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC-------CCCCCC---CHHHHHHhCC--CCcH
Q 016044 238 SE------------LDEAILRRLPQAFEIGMPDRKERAQILKVILKGE-------KVEENI---DFDYLAGLCE--GFTG 293 (396)
Q Consensus 238 ~~------------l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~-------~~~~~~---~l~~la~~~~--g~s~ 293 (396)
.. +.+++++||+..+.|++|+.+++..|++.++... ...-.+ .++.|+.... .+..
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence 53 7899999999999999999999999998877532 111112 2455655422 3455
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016044 294 SDLLEVCKQAAYFSIRELL 312 (396)
Q Consensus 294 ~di~~l~~~A~~~a~~~~~ 312 (396)
++|+++++.+...++.+.+
T Consensus 711 R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 711 RPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp TTHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6888888888777776544
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.70 E-value=2.2e-16 Score=152.37 Aligned_cols=186 Identities=24% Similarity=0.285 Sum_probs=130.0
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV------------ 150 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~------------ 150 (396)
.+.+|++++|++.+++.+...+.. + ..++.++|+||+|||||++|+++++.+++.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~----------~---~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL----------G---RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH----------T---CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred CCCchhhccCcHHHHHHHHHHHHh----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 356899999999999999887642 1 124678999999999999999999987542
Q ss_pred ------------EEEEecccccchhhchHHHHHHHHHHHHH----HhCCcEEEEccccccccCCCCCchHHHHhhHHHHH
Q 016044 151 ------------FINVRISNLMSKWFGDAQKLVAAVFSLAY----KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFM 214 (396)
Q Consensus 151 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll 214 (396)
++.++...- .... .++.++..+. ...+.||+|||+|.+.. ...+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll 140 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASR--TKVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 140 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCS--CCSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCCceEEeccccc--CCHH----HHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHH
Confidence 233332210 1111 1333333332 22357999999998832 1223455
Q ss_pred HHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcH
Q 016044 215 ALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 215 ~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 293 (396)
..++. .+.++++|++|+.+..+.+++++|+ ..+.+++|+.++...+++..+...+.. ++..+..++..+.| +.
T Consensus 141 ~~le~----~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~ 214 (373)
T 1jr3_A 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 214 (373)
T ss_dssp HHHHS----CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CH
T ss_pred HHHhc----CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CH
Confidence 55543 3567888889998889999999998 889999999999999999988654433 12225678888877 66
Q ss_pred HHHHHHHHHHH
Q 016044 294 SDLLEVCKQAA 304 (396)
Q Consensus 294 ~di~~l~~~A~ 304 (396)
.++.++++.+.
T Consensus 215 r~~~~~l~~~~ 225 (373)
T 1jr3_A 215 RDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77888877764
No 64
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.70 E-value=1.8e-15 Score=144.24 Aligned_cols=216 Identities=21% Similarity=0.217 Sum_probs=147.1
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchh
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKW 163 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~ 163 (396)
+.+|++++|++.+++.+...+.... ..+ .++.+++|+|||||||||+++++|+.++.++...+++.+...
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~------~~~---~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~- 90 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAK------MRG---EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ- 90 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH------HHT---CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH-
T ss_pred CccHHHccCcHHHHHHHHHHHHHHH------hcC---CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH-
Confidence 4489999999999888876654210 011 234679999999999999999999999988877665544221
Q ss_pred hchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCc------C--------CCCcEE
Q 016044 164 FGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTT------D--------QNARVM 229 (396)
Q Consensus 164 ~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~------~--------~~~~v~ 229 (396)
..+..++.. ...++|+||||++.+... . .. .++..+..... . .-..+.
T Consensus 91 -----~~l~~~~~~--~~~~~v~~iDE~~~l~~~----~----~e---~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 91 -----GDMAAILTS--LERGDVLFIDEIHRLNKA----V----EE---LLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -----HHHHHHHHH--CCTTCEEEEETGGGCCHH----H----HH---HHHHHHHTSCCCC---------------CCCE
T ss_pred -----HHHHHHHHH--ccCCCEEEEcchhhcCHH----H----HH---HHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 112222221 124589999999988531 1 11 22222221110 0 012467
Q ss_pred EEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 016044 230 VLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSI 308 (396)
Q Consensus 230 vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~ 308 (396)
++++++.+..+++++++||...+.+++|+.+++.++++......... ++..+..++..+.| +++.+..+++.+...|.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 88899999999999999998788999999999999999887654433 12236778888887 56788888887766654
Q ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcc
Q 016044 309 RELLDEERKGKPAAAPRPLSRLDLEKVLTTSR 340 (396)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 340 (396)
.+. ...|+.+++.+++....
T Consensus 232 ~~~------------~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 232 VVK------------ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHT------------CSSBCHHHHHHHHHHHT
T ss_pred HcC------------CCCcCHHHHHHHHHHhC
Confidence 321 14688999999888764
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.3e-17 Score=151.17 Aligned_cols=159 Identities=11% Similarity=0.100 Sum_probs=111.4
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEEecccc
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----------GAVFINVRISNL 159 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----------~~~~~~i~~~~l 159 (396)
|.|.++..+.+...+... ... ..+.+++|+||||||||++++++++++ +..+++++|..+
T Consensus 22 L~~Re~E~~~i~~~L~~~------i~~----~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS------LMS----SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHT----TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHH------hcC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 667777777777666431 111 246889999999999999999999987 357889999775
Q ss_pred cchh----------------hchHHHHHHHHHHHH--HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC
Q 016044 160 MSKW----------------FGDAQKLVAAVFSLA--YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT 221 (396)
Q Consensus 160 ~~~~----------------~g~~~~~~~~~f~~a--~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 221 (396)
.+.+ .+.....+...|... ....+.|++|||+|.+. .+ +++..++....
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~------~q----~~L~~l~~~~~--- 158 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL------SE----KILQYFEKWIS--- 158 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC------CT----HHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh------cc----hHHHHHHhccc---
Confidence 4431 122345566667653 23456899999999996 11 22223333211
Q ss_pred cCCCCcEEEEEecCCCCC----CcHHHHhccC-CceEeCCCCHHHHHHHHHHHhcC
Q 016044 222 TDQNARVMVLAATNRPSE----LDEAILRRLP-QAFEIGMPDRKERAQILKVILKG 272 (396)
Q Consensus 222 ~~~~~~v~vI~atn~~~~----l~~~l~~R~~-~~i~~~~P~~~er~~il~~~l~~ 272 (396)
....++.+|+++|..+. +++++++||. .++.|++++.++..+|++..+..
T Consensus 159 -~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 -SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp -CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23567999999998764 3455677886 57999999999999999998864
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=1.2e-15 Score=148.05 Aligned_cols=222 Identities=14% Similarity=0.098 Sum_probs=147.4
Q ss_pred ccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCc--eEEEECCCCCcHHHHHHHHHHHc----CCcEEEEecccc
Q 016044 86 EFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQK--GVLLYGPPGTGKTMLAKAIAKES----GAVFINVRISNL 159 (396)
Q Consensus 86 ~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~--~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~~~l 159 (396)
.+++++|.++.++.+...+...+ .. ..+. +++|+||||||||++++++++.+ +..++.++|...
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~------~~----~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWL------RN----PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHH------HS----TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CCCCCCChHHHHHHHHHHHHHHH------cC----CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 34789999999999988775311 11 1133 79999999999999999999988 678899998664
Q ss_pred cchh----------------hc-hHHHHHHHHHHHHHH-hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC
Q 016044 160 MSKW----------------FG-DAQKLVAAVFSLAYK-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT 221 (396)
Q Consensus 160 ~~~~----------------~g-~~~~~~~~~f~~a~~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 221 (396)
.... .+ ........+...... ..|.+|+|||+|.+. . .....+...+....
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------~----~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------P----DILSTFIRLGQEAD 153 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------H----HHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------h----HHHHHHHHHHHhCC
Confidence 3210 01 122222333332222 347899999999981 1 22334444443322
Q ss_pred cCCCCcEEEEEecCCC---CCCcHHHHhccCC-ceEeCCCCHHHHHHHHHHHhcCC---CCCCCCCHHHHHHhC------
Q 016044 222 TDQNARVMVLAATNRP---SELDEAILRRLPQ-AFEIGMPDRKERAQILKVILKGE---KVEENIDFDYLAGLC------ 288 (396)
Q Consensus 222 ~~~~~~v~vI~atn~~---~~l~~~l~~R~~~-~i~~~~P~~~er~~il~~~l~~~---~~~~~~~l~~la~~~------ 288 (396)
.....++.+|+++|.+ +.+++.+.+||.. .+.|++++.++..++++..+... ..-.+..++.++..+
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1111468889999887 6788999999865 79999999999999999887531 111222356778887
Q ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhccc
Q 016044 289 ---EGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRK 341 (396)
Q Consensus 289 ---~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 341 (396)
.| .+..+.++|+.|+..+..+. ...++.+++..++.....
T Consensus 234 ~~~~G-~~r~~~~~l~~a~~~a~~~~------------~~~i~~~~v~~~~~~~~~ 276 (389)
T 1fnn_A 234 DTNRG-DARLAIDILYRSAYAAQQNG------------RKHIAPEDVRKSSKEVLF 276 (389)
T ss_dssp CTTSC-CHHHHHHHHHHHHHHHHHTT------------CSSCCHHHHHHHHHHHSC
T ss_pred CCCCC-cHHHHHHHHHHHHHHHHHhC------------CCCcCHHHHHHHHHHHhh
Confidence 44 55678888888876665421 145888888888776543
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.69 E-value=1.7e-16 Score=149.73 Aligned_cols=190 Identities=21% Similarity=0.216 Sum_probs=127.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEe
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVR 155 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~ 155 (396)
...+.+|++++|++.+++.+...+.. + ...+++|+||||||||++|+++++.+ +.+++.++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~----------~----~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER----------K----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT----------T----CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC----------C----CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 45567899999999999998765421 1 12349999999999999999999986 34678888
Q ss_pred cccccchhhchHHHHHHHHHHHH-H-HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 156 ISNLMSKWFGDAQKLVAAVFSLA-Y-KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 156 ~~~l~~~~~g~~~~~~~~~f~~a-~-~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
+++..+. ......+....... . ...+.+++|||+|.+... ..+.++..++ ..+.++.+|++
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le----~~~~~~~~i~~ 138 (319)
T 2chq_A 76 ASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTME----MYSKSCRFILS 138 (319)
T ss_dssp TTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-----------HHHTTGGGTS----SSSSSEEEEEE
T ss_pred CccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-----------HHHHHHHHHH----hcCCCCeEEEE
Confidence 8764331 11111122111000 0 134689999999998321 1112333332 23567889999
Q ss_pred cCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHH
Q 016044 234 TNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQA 303 (396)
Q Consensus 234 tn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A 303 (396)
||.+..+.+++.+|+ ..+.+++|+.+++..++...+...... ++..++.++..+.| ..+.+.++++.+
T Consensus 139 ~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 139 CNYVSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp ESCGGGSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred eCChhhcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999999999999999 589999999999999999998765543 22235667766665 334444444443
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.69 E-value=2.4e-16 Score=166.30 Aligned_cols=205 Identities=18% Similarity=0.216 Sum_probs=140.8
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcC--CCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccch---
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHG--KLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSK--- 162 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~--~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~--- 162 (396)
++++|++.+++.+...+.. ...+ ...+|..++||+||||||||++|+++++.++.+++.++|+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~-------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKM-------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHH-------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHH-------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 3588999999988776642 1111 111234579999999999999999999999999999999887653
Q ss_pred ---------hhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC-------CCC
Q 016044 163 ---------WFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD-------QNA 226 (396)
Q Consensus 163 ---------~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~ 226 (396)
+.|..+. ..+....+...++||||||+|.+.. .+.+.|+..++..... .-.
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH-----------HHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 3332221 1223344455679999999998731 2444566666532110 014
Q ss_pred cEEEEEecCCCC-------------------------CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC--------
Q 016044 227 RVMVLAATNRPS-------------------------ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE-------- 273 (396)
Q Consensus 227 ~v~vI~atn~~~-------------------------~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~-------- 273 (396)
++++|+|||... .+++++++||+..+.|++|+.+++..|++.++...
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~ 677 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKG 677 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 688999999754 57899999999999999999999999999887521
Q ss_pred -CCC-CCCCHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHH
Q 016044 274 -KVE-ENIDFDYLAGLC--EGFTGSDLLEVCKQAAYFSIRELL 312 (396)
Q Consensus 274 -~~~-~~~~l~~la~~~--~g~s~~di~~l~~~A~~~a~~~~~ 312 (396)
.+. .+-.++.++... .++..+++..+++.+...++.+.+
T Consensus 678 ~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 678 VSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp EEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 111 112245566543 245677888888888877666543
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=7.5e-16 Score=145.51 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=128.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEec
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRI 156 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~ 156 (396)
..+.+|++++|++..++.+...+.. + ..++ ++|+||||+|||++|+++++.+ +..++.+++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~----------~---~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD----------G---NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS----------C---CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc----------C---CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 3456899999999999999887642 1 1233 9999999999999999999985 356788887
Q ss_pred ccccchhhchHHHHHHHHHHHHH-------HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEE
Q 016044 157 SNLMSKWFGDAQKLVAAVFSLAY-------KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVM 229 (396)
Q Consensus 157 ~~l~~~~~g~~~~~~~~~f~~a~-------~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 229 (396)
++..+ ...++..+.... ...+.+|+|||+|.+.... .+.++..++. .+.++.
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------~~~L~~~le~----~~~~~~ 139 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA-----------QQALRRTMEL----YSNSTR 139 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH-----------HHTTHHHHHH----TTTTEE
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHH-----------HHHHHHHHhc----cCCCce
Confidence 65322 122333333332 2236899999999984311 1233333332 245678
Q ss_pred EEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHH
Q 016044 230 VLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAA 304 (396)
Q Consensus 230 vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~ 304 (396)
+|++||.+..+.+++.+|+ ..+.+++|+.++..++++..+...... ++..+..++..+.|. .+.+.++++.++
T Consensus 140 ~il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~~~ 213 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQSTV 213 (323)
T ss_dssp EEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 8888899999999999999 589999999999999999887643332 222356778888763 444444444433
No 70
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=1.1e-15 Score=144.73 Aligned_cols=190 Identities=24% Similarity=0.278 Sum_probs=128.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CcEEEEec
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-----AVFINVRI 156 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~-----~~~~~i~~ 156 (396)
..+.+|++++|++.+++.+..++.. + ...+++|+||||||||++|+++++.+. ..++.+++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~----------~----~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT----------G----SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH----------T----CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc----------C----CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 4467899999999999999877642 1 123599999999999999999999863 34777887
Q ss_pred ccccchhhchHHHHHHHHHHHH--HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEec
Q 016044 157 SNLMSKWFGDAQKLVAAVFSLA--YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAAT 234 (396)
Q Consensus 157 ~~l~~~~~g~~~~~~~~~f~~a--~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~at 234 (396)
++..+. ......+....... ....+.+++|||+|.+... ..+.++..++.. +.++.+|+++
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~~----~~~~~~i~~~ 147 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------AQQALRRTMEMF----SSNVRFILSC 147 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT----TTTEEEEEEE
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-----------HHHHHHHHHHhc----CCCCeEEEEe
Confidence 654221 11111111111000 0134689999999998321 122344444432 4467888899
Q ss_pred CCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHHHH
Q 016044 235 NRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQAA 304 (396)
Q Consensus 235 n~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~A~ 304 (396)
|.+..+.+++.+|+ ..+.+++|+.++...+++..+...... ++..++.++..+.| +.+.+.++++.++
T Consensus 148 ~~~~~l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 148 NYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp SCGGGSCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CCccccCHHHHhhC-cEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 99999999999999 589999999999999999988765543 22235677777766 4455555555444
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.66 E-value=1.7e-16 Score=146.33 Aligned_cols=152 Identities=20% Similarity=0.246 Sum_probs=92.5
Q ss_pred cccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEecccccc
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---AVFINVRISNLMS 161 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~~~~l~~ 161 (396)
.+|++++|.+..++.+.+.+... ...+.++||+||||||||++|+++++.+. .+|+.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~------------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH------------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 47899999999988887766421 11247899999999999999999999874 6899999988743
Q ss_pred hhh-----chHHHHH-------HHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------c
Q 016044 162 KWF-----GDAQKLV-------AAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-------T 222 (396)
Q Consensus 162 ~~~-----g~~~~~~-------~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~ 222 (396)
... |...... ...+. ...+++|||||+|.+... ....++..++... .
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~---~a~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHH---HTTTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCCC--
T ss_pred hHHHHHhcCCcccccccccccccchhh---hcCCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCCCcc
Confidence 211 1100000 01111 224589999999998431 1223444444211 0
Q ss_pred CCCCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHH
Q 016044 223 DQNARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERA 263 (396)
Q Consensus 223 ~~~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~ 263 (396)
....++.+|+|||.+ ..+.+++.+||. .+.+..|+..+|.
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~ 183 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRERE 183 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCH
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhhhh
Confidence 112457899999974 247899999994 4566666665543
No 72
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.3e-15 Score=144.44 Aligned_cols=191 Identities=16% Similarity=0.206 Sum_probs=124.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-----------
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGA----------- 149 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~----------- 149 (396)
.+.+.+|++++|++.+++.+...+. ..+ ..++ ++|+||+|+|||++++++++++..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---------~~~---~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---------QPR---DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---------CTT---CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---------hCC---CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 3456789999999999998866441 111 1234 999999999999999999996411
Q ss_pred ------------------cEEEEecccccchhhchHHHHHHHHHHHHH--------------HhCCcEEEEccccccccC
Q 016044 150 ------------------VFINVRISNLMSKWFGDAQKLVAAVFSLAY--------------KLQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 150 ------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~--------------~~~p~vl~iDEid~l~~~ 197 (396)
.++.++.++... .. ...++..+..+. ...|.+++|||++.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~ 149 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMGN---ND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD 149 (354)
T ss_dssp ------------CCEECSSEEEECCC-------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH
T ss_pred eecccccccceeeeecccceEEecHhhcCC---cc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH
Confidence 122232222100 00 001233322221 225679999999986211
Q ss_pred CCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-
Q 016044 198 RRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE- 276 (396)
Q Consensus 198 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~- 276 (396)
..+.++..++.. +.+..+|.+|+.++.+.+++++|| ..+.|++|+.++...+++..+......
T Consensus 150 -----------~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 150 -----------AQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp -----------HHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred -----------HHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 122444445443 335788888999999999999999 899999999999999999988654443
Q ss_pred C-CCCHHHHHHhCCCCcHHHHHHHHHHHHH
Q 016044 277 E-NIDFDYLAGLCEGFTGSDLLEVCKQAAY 305 (396)
Q Consensus 277 ~-~~~l~~la~~~~g~s~~di~~l~~~A~~ 305 (396)
+ +..++.++..+.| +.+++.++++.++.
T Consensus 214 ~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 214 ETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp CCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 2 3346778888876 45555566655543
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.63 E-value=2.6e-15 Score=160.13 Aligned_cols=210 Identities=17% Similarity=0.220 Sum_probs=140.5
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhc-CCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch
Q 016044 87 FESIGGLETIKQALYELVILPLRRPELFSH-GKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK 162 (396)
Q Consensus 87 ~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~-~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~ 162 (396)
+++|+|++.+++.+...+... ... .....|..++||+||||||||++|++++..+ +.+|+.++|+.+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~------~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRA------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHH------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred hcccCCcHHHHHHHHHHHHHH------hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence 467899999999998877531 110 0111233589999999999999999999988 789999999877543
Q ss_pred h-----hchHHHH-----HHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC-------CC
Q 016044 163 W-----FGDAQKL-----VAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD-------QN 225 (396)
Q Consensus 163 ~-----~g~~~~~-----~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~ 225 (396)
. +|..... ...+........++||||||+|.+. ..+.+.|+..++..... +-
T Consensus 631 ~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH-----------PDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGGGGC--------------CHHHHHHHCSSEEEEESSGGGSC-----------HHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred hHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC-----------HHHHHHHHHHhccCceECCCCCEecc
Confidence 1 1111110 1223333344456899999999872 23445666666633211 01
Q ss_pred CcEEEEEecCCC--------------------------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCC------
Q 016044 226 ARVMVLAATNRP--------------------------SELDEAILRRLPQAFEIGMPDRKERAQILKVILKGE------ 273 (396)
Q Consensus 226 ~~v~vI~atn~~--------------------------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~------ 273 (396)
.++++|+|||.. ..+.++|++||+..+.+.+|+.+++..|++.++...
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~ 779 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999972 346788999999999999999999999998887521
Q ss_pred -CCC---CCCCHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHHHHH
Q 016044 274 -KVE---ENIDFDYLAGLCE--GFTGSDLLEVCKQAAYFSIRELLD 313 (396)
Q Consensus 274 -~~~---~~~~l~~la~~~~--g~s~~di~~l~~~A~~~a~~~~~~ 313 (396)
... .+-.++.|+...- .+..++|+++++.+...++.+.+-
T Consensus 780 ~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 780 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp TTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred CCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 111 1122555666544 456778999999988887776543
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.62 E-value=4.5e-17 Score=153.22 Aligned_cols=156 Identities=22% Similarity=0.338 Sum_probs=101.6
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhh
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWF 164 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~ 164 (396)
++|+|.+..++.+.+.+... ...+.++||+||||||||++|+++++.+ +.+|+.++|+.+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~ 69 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLL 69 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHH
Confidence 35889998888887776531 1235789999999999999999999965 57899999987744221
Q ss_pred -----ch-------HHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------cCCC
Q 016044 165 -----GD-------AQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-------TDQN 225 (396)
Q Consensus 165 -----g~-------~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~ 225 (396)
|. ........|..+ .+++|||||+|.+... ....++..++... ...+
T Consensus 70 ~~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPL-----------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHH-----------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHH-----------HHHHHHHHHhcCEeeecCCccccc
Confidence 10 000111223333 4589999999998432 1224444444321 1123
Q ss_pred CcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHH----HHHHHh
Q 016044 226 ARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQ----ILKVIL 270 (396)
Q Consensus 226 ~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~----il~~~l 270 (396)
.++.+|++||.+ ..+++++.+|| ..+.+..|+..+|.+ ++++++
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl-~~~~i~lPpL~eR~edi~~l~~~~l 190 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRL-NVVAIEMPSLRQRREDIPLLADHFL 190 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHH-SSEEEECCCSGGGGGGHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhc-CeeEEeccCHHHhHhhHHHHHHHHH
Confidence 468899999975 34678899999 477777777666544 555544
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.61 E-value=4e-16 Score=155.52 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=94.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CcEEEEeccc-----ccc
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG--AVFINVRISN-----LMS 161 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~--~~~~~i~~~~-----l~~ 161 (396)
.|+|++++++.+...+.. ..++||+||||||||++|+++|+.++ .+|..+++.. +.+
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 478999999887654431 36899999999999999999999884 3555555532 222
Q ss_pred hhhchHHHHHHHHHHHHHHh---CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhc-------cCcCCCCcEEEE
Q 016044 162 KWFGDAQKLVAAVFSLAYKL---QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDG-------FTTDQNARVMVL 231 (396)
Q Consensus 162 ~~~g~~~~~~~~~f~~a~~~---~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~-------~~~~~~~~v~vI 231 (396)
.+.+.... -...|..+... .++|||||||+.+.. .....++..++. .....+.++ +|
T Consensus 87 ~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI 153 (500)
T 3nbx_X 87 PLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRNGAHVEKIPMRL-LV 153 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEECSSSEEECCCCE-EE
T ss_pred cccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccCCCCcCCcchhh-hh
Confidence 11111100 01112111111 357999999987632 222345555532 222223344 56
Q ss_pred EecCCCC---CCcHHHHhccCCceEeCCCCH-HHHHHHHHHHh
Q 016044 232 AATNRPS---ELDEAILRRLPQAFEIGMPDR-KERAQILKVIL 270 (396)
Q Consensus 232 ~atn~~~---~l~~~l~~R~~~~i~~~~P~~-~er~~il~~~l 270 (396)
+|||+.. ...+++++||...+.+++|+. +++..|++...
T Consensus 154 ~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 154 AASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp EEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred hccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 7777532 245799999988899999987 77888887655
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=1.9e-16 Score=161.86 Aligned_cols=168 Identities=23% Similarity=0.296 Sum_probs=100.6
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEE----ecccccchh
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINV----RISNLMSKW 163 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i----~~~~l~~~~ 163 (396)
..|+|++.+|+.+...+.. ..+..... ...+...++||+||||||||++|+++|+.++..++.. ++..+....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~ 371 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV 371 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccccccccee
Confidence 4689999998887332211 00000000 1122334899999999999999999999887665442 223332221
Q ss_pred hchH----HHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhc---------cCcCCCCcEEE
Q 016044 164 FGDA----QKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDG---------FTTDQNARVMV 230 (396)
Q Consensus 164 ~g~~----~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~v~v 230 (396)
.... .......+..| .++|+||||+|.+.... ...++..|+. .....+.++.+
T Consensus 372 ~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~~~-----------q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 372 VREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRDED-----------RVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCSHH-----------HHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eeccccccccccCCeeEec---CCCcEEeehhhhCCHhH-----------hhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 1100 00000112222 45899999999984321 2244444442 11223467889
Q ss_pred EEecCCCC-------------CCcHHHHhccCCce-EeCCCCHHHHHHHHHHHhcCC
Q 016044 231 LAATNRPS-------------ELDEAILRRLPQAF-EIGMPDRKERAQILKVILKGE 273 (396)
Q Consensus 231 I~atn~~~-------------~l~~~l~~R~~~~i-~~~~P~~~er~~il~~~l~~~ 273 (396)
|+|||+++ .+++++++||+..+ ..+.|+.+ ...|.++.+...
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 99999876 89999999997555 45666666 888888877643
No 77
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.57 E-value=2e-15 Score=126.22 Aligned_cols=132 Identities=14% Similarity=0.179 Sum_probs=88.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhc
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFG 165 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g 165 (396)
+++|.+...+.+.+.+.. +. ....+|||+||||||||++|+++++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~-------~a-----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQ-------LS-----ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHH-------HT-----TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHH-------Hh-----CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 578888888888776642 11 224679999999999999999999976 77899 999887554
Q ss_pred hHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC-------C
Q 016044 166 DAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP-------S 238 (396)
Q Consensus 166 ~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~-------~ 238 (396)
......+..+ .+++|||||+|.+... ....++..+.. ...++.+|++||.+ .
T Consensus 66 ---~~~~~~~~~a---~~g~l~ldei~~l~~~-----------~q~~Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 66 ---PQLNDFIALA---QGGTLVLSHPEHLTRE-----------QQYHLVQLQSQ----EHRPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp ---SCHHHHHHHH---TTSCEEEECGGGSCHH-----------HHHHHHHHHHS----SSCSSCEEEEESSCHHHHHHHS
T ss_pred ---hhhhcHHHHc---CCcEEEEcChHHCCHH-----------HHHHHHHHHhh----cCCCEEEEEECCcCHHHHHHcC
Confidence 1122334433 4589999999998432 11234444432 24457889999864 2
Q ss_pred CCcHHHHhccCCceEeCCCC
Q 016044 239 ELDEAILRRLPQAFEIGMPD 258 (396)
Q Consensus 239 ~l~~~l~~R~~~~i~~~~P~ 258 (396)
.+.+.+..|+ ..+.+..|+
T Consensus 125 ~~~~~L~~rl-~~~~i~lPp 143 (145)
T 3n70_A 125 HIIAELYYCF-AMTQIACLP 143 (145)
T ss_dssp CCCHHHHHHH-HHHEEECCC
T ss_pred CCCHHHHHHh-cCCEEeCCC
Confidence 5677888887 344454443
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=3.6e-14 Score=135.53 Aligned_cols=172 Identities=20% Similarity=0.262 Sum_probs=116.4
Q ss_pred CCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CcEEEEecc
Q 016044 83 IDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG-----AVFINVRIS 157 (396)
Q Consensus 83 ~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~-----~~~~~i~~~ 157 (396)
.+.+|++++|++.+++.|...+.. +. .+ +++|+||||||||++|+++++.+. ..+..++++
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~----------g~---~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE----------GK---LP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT----------TC---CC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc----------CC---Cc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 456899999999999998776641 21 12 399999999999999999999863 246677765
Q ss_pred cccchhhchHHHHHHHHHHHHHH------hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEE
Q 016044 158 NLMSKWFGDAQKLVAAVFSLAYK------LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVL 231 (396)
Q Consensus 158 ~l~~~~~g~~~~~~~~~f~~a~~------~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 231 (396)
+..+ . ..++..+..... ..+.+++|||+|.+... ..+.++..++.. +..+.+|
T Consensus 86 ~~~~--~----~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~----~~~~~~i 144 (340)
T 1sxj_C 86 DDRG--I----DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-----------AQNALRRVIERY----TKNTRFC 144 (340)
T ss_dssp SCCS--H----HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHT----TTTEEEE
T ss_pred cccc--H----HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhcC----CCCeEEE
Confidence 5321 1 122222222211 13589999999988321 122444444432 3456778
Q ss_pred EecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC
Q 016044 232 AATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLCEG 290 (396)
Q Consensus 232 ~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~~g 290 (396)
++||.+..+.+++++|| ..+.|++++.++..+++...+....+. .+.....++..+.|
T Consensus 145 l~~n~~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp EEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred EEecCccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88899999999999999 689999999999999999888544332 11224455555544
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.55 E-value=1.6e-15 Score=126.47 Aligned_cols=132 Identities=13% Similarity=0.177 Sum_probs=87.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHH
Q 016044 89 SIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQ 168 (396)
Q Consensus 89 ~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~ 168 (396)
+++|.+..++.+.+.+.. +.. .+.+|+|+||||||||++|+++++..+ +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~-------~~~-----~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEA-------AAK-----RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHH-------HHT-----CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHH-------HhC-----CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 578988888888877652 111 246799999999999999999999888 99999998865433
Q ss_pred HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC-CC----CcHH
Q 016044 169 KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP-SE----LDEA 243 (396)
Q Consensus 169 ~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~-~~----l~~~ 243 (396)
....+..+ .+++|||||+|.+.... ...++..++... +.++.+|++||.+ .. +++.
T Consensus 67 --~~~~~~~a---~~~~l~lDei~~l~~~~-----------q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 --PMELLQKA---EGGVLYVGDIAQYSRNI-----------QTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp --HHHHHHHT---TTSEEEEEECTTCCHHH-----------HHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHH
T ss_pred --hhhHHHhC---CCCeEEEeChHHCCHHH-----------HHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHH
Confidence 33444433 45899999999984321 113333333321 3457888888854 33 5567
Q ss_pred HHhccCCceEeCCCC
Q 016044 244 ILRRLPQAFEIGMPD 258 (396)
Q Consensus 244 l~~R~~~~i~~~~P~ 258 (396)
+..|+ ..+.+..|+
T Consensus 128 L~~rl-~~~~i~lPp 141 (143)
T 3co5_A 128 LAGLF-SESVVRIPP 141 (143)
T ss_dssp HHHHS-SSEEEEECC
T ss_pred HHHHh-cCcEEeCCC
Confidence 77787 444444443
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.51 E-value=2.4e-13 Score=129.46 Aligned_cols=157 Identities=12% Similarity=0.140 Sum_probs=106.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCc------------------------EEEEecccccchhhchHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAV------------------------FINVRISNLMSKWFGDAQKLVAAVFSL 177 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~ 177 (396)
.++.+||+||||+|||++|+++|+.+.+. ++.++..+- +... .-..++.+...
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~~~--~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNTL--GVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSSB--CHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CCCC--CHHHHHHHHHH
Confidence 36789999999999999999999987542 333332200 0001 12234455544
Q ss_pred HHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceE
Q 016044 178 AYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFE 253 (396)
Q Consensus 178 a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~ 253 (396)
+.. ..+.|++|||+|.+... ..+.+++.++. ++.++++|.+||.++.+.+++++|+ ..+.
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~-----------a~naLLk~lEe----p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~ 163 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA-----------AANALLKTLEE----PPAETWFFLATREPERLLATLRSRC-RLHY 163 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH-----------HHHHHHHHHTS----CCTTEEEEEEESCGGGSCHHHHTTS-EEEE
T ss_pred HhhccccCCcEEEEECchhhcCHH-----------HHHHHHHHhcC----CCCCeEEEEEeCChHhCcHHHhhcc-eeee
Confidence 432 23579999999998321 23356666653 4567888889999999999999999 7899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 254 IGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 254 ~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
|++|+.++..++++..+ .. ++..+..++..+.| +.+.+.++++.
T Consensus 164 ~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 164 LAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQG 207 (334)
T ss_dssp CCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhcc
Confidence 99999999999998876 12 12235667777776 44555444443
No 81
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.44 E-value=2e-13 Score=151.38 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=107.8
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccC----------hhhhhc-----------------CCCCCCCceEEEECCCC
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRR----------PELFSH-----------------GKLLGPQKGVLLYGPPG 133 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~----------~~~~~~-----------------~~~~~~~~~vLL~GppG 133 (396)
..+.++|++++|++++|+.+.+.+.+|+.+ ++.|.. .+..+..+.+++|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 455699999999999999999999999844 455544 12233334499999999
Q ss_pred CcHHHHHHHHHHHc---CCcEEEEeccccc------------chhhch----HHHHHHHHHHHHHHhCCcEEEEcccccc
Q 016044 134 TGKTMLAKAIAKES---GAVFINVRISNLM------------SKWFGD----AQKLVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 134 tGKT~la~ala~~~---~~~~~~i~~~~l~------------~~~~g~----~~~~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
||||++|++++.+. |.+.+.++..... ++|+++ +++.++.+|..|+...|+++|+|++|.|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999998865 5566666665544 556677 8999999999999999999999999999
Q ss_pred ccCCC------CCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC
Q 016044 195 LGQRR------TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR 236 (396)
Q Consensus 195 ~~~~~------~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 236 (396)
.+.+. ........|.+++++..+++... ..+|+|| +||+
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~--~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLI-FINQ 1217 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--HTTCEEE-EEEC
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhc--cCCeEEE-Eecc
Confidence 87731 11235667788899999988654 3456666 6664
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.44 E-value=2.4e-12 Score=125.56 Aligned_cols=207 Identities=16% Similarity=0.143 Sum_probs=127.1
Q ss_pred cccccChHHHHHHHHHHH-HccccChhhhhcCCCCCCCceEEE--ECCCCCcHHHHHHHHHHHc---------CCcEEEE
Q 016044 87 FESIGGLETIKQALYELV-ILPLRRPELFSHGKLLGPQKGVLL--YGPPGTGKTMLAKAIAKES---------GAVFINV 154 (396)
Q Consensus 87 ~~~i~G~~~~k~~l~~~v-~~~l~~~~~~~~~~~~~~~~~vLL--~GppGtGKT~la~ala~~~---------~~~~~~i 154 (396)
.++++|.+...+.+.+.+ .... .. ....+..++| +||||+|||++++++++.. +..++.+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~------~~--~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLL------SG--AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHH------TS--SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHh------cC--CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 378999999988888776 4211 11 0012567999 9999999999999999865 5567888
Q ss_pred ecccccch------hh----------c-hHHHHHHHHHHHHH-HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHH
Q 016044 155 RISNLMSK------WF----------G-DAQKLVAAVFSLAY-KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMAL 216 (396)
Q Consensus 155 ~~~~l~~~------~~----------g-~~~~~~~~~f~~a~-~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 216 (396)
+|...... .. + ........+..... ...|.+|+|||+|.+...... ..+ .+..++..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-~~~----~l~~l~~~ 167 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-AAE----DLYTLLRV 167 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-CHH----HHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-chH----HHHHHHHH
Confidence 87432111 00 1 01222223322222 235789999999998543111 111 12233333
Q ss_pred hhccCcCCC--CcEEEEEecCCCC---CCc---HHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCC---CCCCHHHHH
Q 016044 217 WDGFTTDQN--ARVMVLAATNRPS---ELD---EAILRRLPQAFEIGMPDRKERAQILKVILKGEKVE---ENIDFDYLA 285 (396)
Q Consensus 217 l~~~~~~~~--~~v~vI~atn~~~---~l~---~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~---~~~~l~~la 285 (396)
+..... .. .++.+|++++.++ .++ +.+.+++...+.+++++.++..++++..+...... .+..+..++
T Consensus 168 ~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 168 HEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 332211 12 5788888887655 334 66677776669999999999999998776421111 122356777
Q ss_pred HhCC------CCcHHHHHHHHHHHHHHHH
Q 016044 286 GLCE------GFTGSDLLEVCKQAAYFSI 308 (396)
Q Consensus 286 ~~~~------g~s~~di~~l~~~A~~~a~ 308 (396)
..+. | .+..+..+++.|+..+.
T Consensus 247 ~~~~~~~~~~G-~p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 247 DVYGEDKGGDG-SARRAIVALKMACEMAE 274 (412)
T ss_dssp HHHCGGGTSCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCC-cHHHHHHHHHHHHHHHH
Confidence 8888 7 45678888887766554
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.43 E-value=1.2e-13 Score=141.89 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=43.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 81 DHIDVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 81 ~~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
..++.+|++++|++.+++.+...+.. ..+++|+||||||||++|++++..+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~----------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ----------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT----------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhccccccC----------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 44567899999999999888765531 35799999999999999999999774
No 84
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.40 E-value=3.6e-13 Score=101.49 Aligned_cols=77 Identities=22% Similarity=0.418 Sum_probs=70.9
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHH
Q 016044 254 IGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLE 333 (396)
Q Consensus 254 ~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~ 333 (396)
-.+|+.++|.+||+.++++.++..+++++.||+.|+||||+||.++|++|++.++++. ...|+++||.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------~~~I~~~df~ 75 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------RVHVTQEDFE 75 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------CSEECHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------CCCCCHHHHH
Confidence 4689999999999999999988889999999999999999999999999999999874 2679999999
Q ss_pred HHHHhcccc
Q 016044 334 KVLTTSRKT 342 (396)
Q Consensus 334 ~al~~~~~~ 342 (396)
.|+++++|.
T Consensus 76 ~Al~~v~p~ 84 (86)
T 2krk_A 76 MAVAKVMQK 84 (86)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHccC
Confidence 999998775
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=1.4e-12 Score=122.31 Aligned_cols=142 Identities=11% Similarity=0.121 Sum_probs=100.5
Q ss_pred ChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc------CCcEEEEecccccchhhc
Q 016044 92 GLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES------GAVFINVRISNLMSKWFG 165 (396)
Q Consensus 92 G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~------~~~~~~i~~~~l~~~~~g 165 (396)
|++++.+.|...+.. + . .+.+||+||||+|||++|+++++.+ +..++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~----------~---~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~~- 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S---E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NI- 62 (305)
T ss_dssp ---CHHHHHHHHHHT----------C---S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CB-
T ss_pred ChHHHHHHHHHHHHC----------C---C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---CC-
Confidence 567777777766542 1 1 4689999999999999999999864 346777775421 11
Q ss_pred hHHHHHHHHHHHHHHh----CCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCc
Q 016044 166 DAQKLVAAVFSLAYKL----QPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELD 241 (396)
Q Consensus 166 ~~~~~~~~~f~~a~~~----~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 241 (396)
.-..++.+...+... ...|++|||+|.+... ..+.|+..++ +++..+++|.+|+.++.+.
T Consensus 63 -~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-----------a~naLLk~LE----ep~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 -GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-----------AANAFLKALE----EPPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp -CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-----------HHHHTHHHHH----SCCTTEEEEEEESCGGGSC
T ss_pred -CHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-----------HHHHHHHHHh----CCCCCeEEEEEECChHhCh
Confidence 122345555555422 2369999999998321 1335555555 3456788888888899999
Q ss_pred HHHHhccCCceEeCCCCHHHHHHHHHHHh
Q 016044 242 EAILRRLPQAFEIGMPDRKERAQILKVIL 270 (396)
Q Consensus 242 ~~l~~R~~~~i~~~~P~~~er~~il~~~l 270 (396)
+++++| .+.|++|+.++..++++..+
T Consensus 127 ~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 999999 89999999999999998887
No 86
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=97.45 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHH
Q 016044 255 GMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEK 334 (396)
Q Consensus 255 ~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~ 334 (396)
|+|+.++|.+||+.++++..+..++++..||..|+||||+||.++|++|++.++++. ...|+++||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------~~~i~~~d~~~ 68 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------RVHVTQEDFEM 68 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------CSEECHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------CCCCCHHHHHH
Confidence 689999999999999999988889999999999999999999999999999999872 26799999999
Q ss_pred HHHhcccc
Q 016044 335 VLTTSRKT 342 (396)
Q Consensus 335 al~~~~~~ 342 (396)
|++++...
T Consensus 69 Al~~v~~~ 76 (78)
T 3kw6_A 69 AVAKVMQK 76 (78)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhc
Confidence 99987543
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.32 E-value=2.4e-12 Score=125.01 Aligned_cols=215 Identities=24% Similarity=0.301 Sum_probs=121.2
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEecccccchh
Q 016044 87 FESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG---AVFINVRISNLMSKW 163 (396)
Q Consensus 87 ~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~~~~l~~~~ 163 (396)
++.++|.+...+.+.+.+.. .+ ....+++++|++||||+++|++++...+ .+|+.++|+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~-------~a-----~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~ 203 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK-------IS-----CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDI 203 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH-------HT-----TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHH
T ss_pred chhhhhccHHhhHHHHHHHH-------hc-----CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHH
Confidence 34567776666666655532 11 2246799999999999999999998764 689999998764322
Q ss_pred h-----chHH-------HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhcc-------CcCC
Q 016044 164 F-----GDAQ-------KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGF-------TTDQ 224 (396)
Q Consensus 164 ~-----g~~~-------~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~ 224 (396)
. |... ......|..| ..++||||||+.+... ....++..++.. ....
T Consensus 204 ~~~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 204 FEAELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGELSLE-----------AQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGCCHH-----------HHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHHHhcCCCCCCCCCcccccCCceeeC---CCcEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCcee
Confidence 1 1000 0011223333 4589999999998322 111333333321 1111
Q ss_pred CCcEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHH----HHHHHhcCCCCCCCCCHHHHHHhCCCCcH
Q 016044 225 NARVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQ----ILKVILKGEKVEENIDFDYLAGLCEGFTG 293 (396)
Q Consensus 225 ~~~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~----il~~~l~~~~~~~~~~l~~la~~~~g~s~ 293 (396)
..++.+|+|||.. ..+.+.+..|+ ..+.+..|+..+|.+ ++.+++...... ......++++
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~ 341 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKKFSRK-------YAKEVEGFTK 341 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHHH-------TTCCCCEECH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHHHHHH-------cCCCCCCCCH
Confidence 2467899999963 45678888888 777788888877754 333433211000 0000123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHH
Q 016044 294 SDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKV 335 (396)
Q Consensus 294 ~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~a 335 (396)
..+..+..+.|..+++++.+.............|+.+|+...
T Consensus 342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 342 SAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCL 383 (387)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSSEECHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhCCCCcCcHHHCcHh
Confidence 555555555555555554443322111112246777777543
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.27 E-value=8.9e-12 Score=94.39 Aligned_cols=73 Identities=29% Similarity=0.476 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 258 DRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 258 ~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
+.++|.+||+.++++.++..+++++.||+.|+||||+||.++|++|++.++++.. ..|+++||..|++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~------------~~i~~~df~~Al~ 69 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------------KVATEKDFLKAVD 69 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC------------SSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc------------ccCCHHHHHHHHH
Confidence 5678999999999999998999999999999999999999999999999998731 5699999999999
Q ss_pred hcccc
Q 016044 338 TSRKT 342 (396)
Q Consensus 338 ~~~~~ 342 (396)
++.+.
T Consensus 70 ~v~~~ 74 (88)
T 3vlf_B 70 KVISG 74 (88)
T ss_dssp HHTC-
T ss_pred HHhcC
Confidence 98776
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.24 E-value=9.2e-12 Score=143.74 Aligned_cols=140 Identities=21% Similarity=0.408 Sum_probs=92.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHH-HcCCcEEEEecccccchhhchHHHHHHHHHHHH-H--------------HhCCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK-ESGAVFINVRISNLMSKWFGDAQKLVAAVFSLA-Y--------------KLQPAII 186 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~-~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a-~--------------~~~p~vl 186 (396)
.+++||+||||||||++|+.+.. ..+..++.++++...+. ..+...+... . ..+++|+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 47999999999999999955544 44678888888765432 1222222221 0 1123699
Q ss_pred EEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCC------CcEEEEEecCCCC-----CCcHHHHhccCCceEeC
Q 016044 187 FIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQN------ARVMVLAATNRPS-----ELDEAILRRLPQAFEIG 255 (396)
Q Consensus 187 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~------~~v~vI~atn~~~-----~l~~~l~~R~~~~i~~~ 255 (396)
||||+|.....+- +.+ .....+.+++. ..++..... .++.+|||||+|+ .++++++||| ..+.++
T Consensus 1341 FiDEinmp~~d~y-g~q-~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-GSQ-NVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EEETTTCSCCCSS-SCC-HHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred Eeccccccccccc-Cch-hHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 9999986433321 111 22233334432 223221111 3589999999995 7999999999 899999
Q ss_pred CCCHHHHHHHHHHHhcC
Q 016044 256 MPDRKERAQILKVILKG 272 (396)
Q Consensus 256 ~P~~~er~~il~~~l~~ 272 (396)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988753
No 90
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.22 E-value=1.1e-11 Score=92.93 Aligned_cols=74 Identities=22% Similarity=0.394 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHH
Q 016044 258 DRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLT 337 (396)
Q Consensus 258 ~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 337 (396)
+.++|.+||+.++++.++..++++..+|+.|+||||+||.++|++|++.++++. ..+|+++||..|++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------~~~i~~~df~~Al~ 69 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------RYIVLAKDFEKAYK 69 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------CSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------cCCcCHHHHHHHHH
Confidence 678999999999999988889999999999999999999999999999998763 26799999999999
Q ss_pred hcccch
Q 016044 338 TSRKTR 343 (396)
Q Consensus 338 ~~~~~~ 343 (396)
.++|+.
T Consensus 70 ~~~ps~ 75 (83)
T 3aji_B 70 TVIKKD 75 (83)
T ss_dssp HHCC--
T ss_pred HHccCc
Confidence 999984
No 91
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.18 E-value=2.3e-11 Score=117.14 Aligned_cols=194 Identities=21% Similarity=0.300 Sum_probs=115.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--EEEEecccccchhh-
Q 016044 88 ESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAV--FINVRISNLMSKWF- 164 (396)
Q Consensus 88 ~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~--~~~i~~~~l~~~~~- 164 (396)
..++|.+...+.+.+.+.. .+. ....++++|++||||+++|++++...+.. |+.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~-------~a~-----~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~ 196 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPK-------IAK-----SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAE 196 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHH-------HHT-----SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHH
T ss_pred ccccccchHHHHHHhhhhh-------hhc-----cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHH
Confidence 4577877777766655431 111 23569999999999999999999876543 99999987643321
Q ss_pred ----chHH-------HHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccC-------cCCCC
Q 016044 165 ----GDAQ-------KLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFT-------TDQNA 226 (396)
Q Consensus 165 ----g~~~-------~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~ 226 (396)
|... ......|..| ..++||||||+.+.... ...++..++.-. .....
T Consensus 197 ~~lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~~~~-----------Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 197 SELFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGELDQRV-----------QAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHHHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGSCHHH-----------HHHHHHHHHHSEECCBTCCCBEEC
T ss_pred HHhcCccccccCCcccccCChHhhc---CCCeEEecChhhCCHHH-----------HHHHHHHHHhCCcccCCCCcceee
Confidence 1000 0001123333 45899999999983221 123343333211 11123
Q ss_pred cEEEEEecCCC-------CCCcHHHHhccCCceEeCCCCHHHHHH----HHHHHhcCCCCCCCCCHHHHHHhCCCCcHHH
Q 016044 227 RVMVLAATNRP-------SELDEAILRRLPQAFEIGMPDRKERAQ----ILKVILKGEKVEENIDFDYLAGLCEGFTGSD 295 (396)
Q Consensus 227 ~v~vI~atn~~-------~~l~~~l~~R~~~~i~~~~P~~~er~~----il~~~l~~~~~~~~~~l~~la~~~~g~s~~d 295 (396)
++.+|++||.. ..+.++|..|+ ..+.+..|+..+|.+ ++.+++..... .......++++..
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~-------~~~~~~~~~~~~a 334 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYYRL-SVFQIYLPPLRERGKDVILLAEYFLKKFAK-------EYKKNCFELSEET 334 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHH-TSEEEECCCGGGSTTHHHHHHHHHHHHHHH-------HTTCCCCCBCHHH
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHHHh-CCeEEeCCChhhchhhHHHHHHHHHHHHHH-------HcCCCCCCcCHHH
Confidence 67899999853 35667888898 777777787777644 34444432110 0011123567777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016044 296 LLEVCKQAAYFSIRELLDEE 315 (396)
Q Consensus 296 i~~l~~~A~~~a~~~~~~~~ 315 (396)
+..|+++.|..+++++.+..
T Consensus 335 ~~~L~~~~wpGNvreL~n~i 354 (368)
T 3dzd_A 335 KEYLMKQEWKGNVRELKNLI 354 (368)
T ss_dssp HHHHHTCCCTTHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHH
Confidence 77777777777777765443
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.14 E-value=1.3e-10 Score=100.25 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=60.6
Q ss_pred CCcccccccC----hHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEE
Q 016044 83 IDVEFESIGG----LETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINV 154 (396)
Q Consensus 83 ~~~~~~~i~G----~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i 154 (396)
.+.+|+++++ +..+.+.+.+++.. + ....+.+++|+||+|||||+++++++..+ |..++.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN-------F----NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS-------C----CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh-------c----cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3567888875 34444555444432 1 12235789999999999999999999866 6666777
Q ss_pred ecccccchhhchHHHH-HHHHHHHHHHhCCcEEEEcccccc
Q 016044 155 RISNLMSKWFGDAQKL-VAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 155 ~~~~l~~~~~g~~~~~-~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
++.++........... ...... ....|.+|+|||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCC
Confidence 7766644332111100 001111 2236799999999853
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.08 E-value=4.2e-10 Score=94.10 Aligned_cols=105 Identities=14% Similarity=0.320 Sum_probs=67.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRR 199 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~ 199 (396)
...++|+||+|+|||+++++++... |...+.++..++... +...++.+|+|||++.+....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~- 99 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE- 99 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH-
Confidence 5679999999999999999999976 667888888776544 112357899999998863221
Q ss_pred CCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecC-CCCCCc--HHHHhccCCceEeC
Q 016044 200 TSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATN-RPSELD--EAILRRLPQAFEIG 255 (396)
Q Consensus 200 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn-~~~~l~--~~l~~R~~~~i~~~ 255 (396)
.+ .+...++.... .+..++|.++| .|..+. +++.+|+..-..+.
T Consensus 100 ---~~-------~l~~li~~~~~--~g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 100 ---QA-------LLFSIFNRFRN--SGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp ---HH-------HHHHHHHHHHH--HTCCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred ---HH-------HHHHHHHHHHH--cCCcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 22 22222222211 11222344555 454332 89999986655544
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.07 E-value=9.2e-09 Score=97.75 Aligned_cols=187 Identities=15% Similarity=0.154 Sum_probs=112.5
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc---
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM--- 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~--- 160 (396)
....+.++|.+...+.|.+ +. . +.++++||+|+|||++++.++++.+..++.+++....
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~---------------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR---------------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC---------------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCHHHhcChHHHHHHHHH-hc---------------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 3456778999988888865 42 0 4789999999999999999999887777777775430
Q ss_pred --c--hhhch---------------------------------------HHHHHHHHHHHHHHh--CCcEEEEccccccc
Q 016044 161 --S--KWFGD---------------------------------------AQKLVAAVFSLAYKL--QPAIIFIDEVDSFL 195 (396)
Q Consensus 161 --~--~~~g~---------------------------------------~~~~~~~~f~~a~~~--~p~vl~iDEid~l~ 195 (396)
. ..... ....+..++...... +|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 0 00000 001123344333332 37899999999986
Q ss_pred cCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCC---------cHHHHhccCCceEeCCCCHHHHHHHH
Q 016044 196 GQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSEL---------DEAILRRLPQAFEIGMPDRKERAQIL 266 (396)
Q Consensus 196 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l---------~~~l~~R~~~~i~~~~P~~~er~~il 266 (396)
......... .+...++.. .++.+|.++.....+ ...+..|+...+.+++.+.++..+++
T Consensus 151 ~~~~~~~~~-------~l~~~~~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 151 KLRGVNLLP-------ALAYAYDNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp GCTTCCCHH-------HHHHHHHHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred ccCchhHHH-------HHHHHHHcC-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 421111111 121222221 245666665532211 11233355567899999999999999
Q ss_pred HHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 267 KVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 267 ~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
...+.......+ +...+...+.|+. .-+..++..
T Consensus 219 ~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHHH
Confidence 887642222222 2478888999865 456666554
No 95
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.05 E-value=2.5e-10 Score=100.24 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=61.0
Q ss_pred CCcccccccChHH----HHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 016044 83 IDVEFESIGGLET----IKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVR 155 (396)
Q Consensus 83 ~~~~~~~i~G~~~----~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~ 155 (396)
...+|+++++.+. +.+.+.+++.. +.. ...+.+++|+||||||||++|+++++.+ +.+++.++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAE-------YEP---GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHH-------CCS---SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHH-------hhh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3568888887543 33333333321 000 1123789999999999999999999977 67788888
Q ss_pred cccccchhhchHH-HHHHHHHHHHHHhCCcEEEEccccccc
Q 016044 156 ISNLMSKWFGDAQ-KLVAAVFSLAYKLQPAIIFIDEVDSFL 195 (396)
Q Consensus 156 ~~~l~~~~~g~~~-~~~~~~f~~a~~~~p~vl~iDEid~l~ 195 (396)
++++......... ......+.... .+.+|+|||++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 90 VPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred hHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 8766543322110 00112222222 34699999997753
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.04 E-value=1e-10 Score=113.80 Aligned_cols=221 Identities=19% Similarity=0.088 Sum_probs=113.5
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHH-HHHcCCcEEEEe-cc---cccchhh
Q 016044 90 IGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI-AKESGAVFINVR-IS---NLMSKWF 164 (396)
Q Consensus 90 i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~al-a~~~~~~~~~i~-~~---~l~~~~~ 164 (396)
|.|++.+|+.|.-.+.. .....+..-++||.|+||| ||++|+++ ++.+....+... ++ .+.....
T Consensus 215 I~G~e~vK~aLll~L~G---------G~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFS---------CVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTT---------CCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcC---------CccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEE
Confidence 88999998887543321 1000111237999999999 99999999 765543322211 11 1111100
Q ss_pred chH-HHHHHHHHHHHHHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC-----
Q 016044 165 GDA-QKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS----- 238 (396)
Q Consensus 165 g~~-~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~----- 238 (396)
+.+ ...-...+..| ..+++|+|||+.+..+.+. .+.+.+.+-.-.+.|. .-+.++.||+|+|+.+
T Consensus 285 ~~tG~~~~~G~l~LA---dgGvl~lDEIn~~~~~~qs----aLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~~ 355 (506)
T 3f8t_A 285 EDRGWALRAGAAVLA---DGGILAVDHLEGAPEPHRW----ALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPSD 355 (506)
T ss_dssp ESSSEEEEECHHHHT---TTSEEEEECCTTCCHHHHH----HHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CCS
T ss_pred cCCCcccCCCeeEEc---CCCeeehHhhhhCCHHHHH----HHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCCC
Confidence 000 00001112222 3489999999998433222 1111111100011222 2356789999999865
Q ss_pred ------CCcHHHHhccCCceE-eCCCCHHHH-------------HHHHHHHhcCCCCCCCCC---HHHHHH---------
Q 016044 239 ------ELDEAILRRLPQAFE-IGMPDRKER-------------AQILKVILKGEKVEENID---FDYLAG--------- 286 (396)
Q Consensus 239 ------~l~~~l~~R~~~~i~-~~~P~~~er-------------~~il~~~l~~~~~~~~~~---l~~la~--------- 286 (396)
.|++++++||+..+. ++.|+.++- .+++. +++.......++ .+.+..
T Consensus 356 ~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~ 434 (506)
T 3f8t_A 356 PPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWYETRREEV 434 (506)
T ss_dssp CGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHHHHHhcCc
Confidence 789999999976543 455554331 11111 112000011111 111110
Q ss_pred --------hCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 287 --------LCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 287 --------~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
..-|.|++.+..+++-|...|.-+. ...++.+|+..|+.-++.+
T Consensus 435 ~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g------------R~~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 435 EERLGMGLPTLPVTRRQLESVERLAKAHARMRL------------SDDVEPEDVDIAAELVDWY 486 (506)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT------------CSEECHHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHHcC------------cCCCCHHHHHHHHHHHHHH
Confidence 1336777777777776665555442 1568999999999887655
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.03 E-value=1.7e-08 Score=95.74 Aligned_cols=191 Identities=15% Similarity=0.148 Sum_probs=111.6
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc---
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM--- 160 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~--- 160 (396)
...-+.++|.+...+.|.+.+.. .+.++++||+|+|||++++.++++.+ ++.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 34456789999999998876541 15799999999999999999999876 5666654321
Q ss_pred ---------c---hhh-------------------------chHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCch
Q 016044 161 ---------S---KWF-------------------------GDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH 203 (396)
Q Consensus 161 ---------~---~~~-------------------------g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~ 203 (396)
. ... ......+..+...+...+|.+|+|||++.+.........
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~ 149 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGK 149 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTH
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchh
Confidence 0 000 011222222222232234899999999998541100111
Q ss_pred HHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC---------CCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCC
Q 016044 204 EALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS---------ELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEK 274 (396)
Q Consensus 204 ~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~---------~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~ 274 (396)
.....+...++.. .++.+|.++.... .....+..|+...+.+++.+.++..+++...+....
T Consensus 150 ----~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 150 ----ELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp ----HHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred ----hHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 1111222222221 2455555554321 111223335545789999999999999988775433
Q ss_pred CC-CCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 275 VE-ENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 275 ~~-~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
.. .......+...+.|+. .-+..++..
T Consensus 221 ~~~~~~~~~~i~~~tgG~P-~~l~~~~~~ 248 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIP-GWLVVFGVE 248 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 22 1223567788888865 456666543
No 98
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.97 E-value=1.5e-10 Score=86.48 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhc
Q 016044 260 KERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLSRLDLEKVLTTS 339 (396)
Q Consensus 260 ~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 339 (396)
++|.+||+.++++.++..+++++.+|..|+||||+||.++|++|++.++++. ...|+++||..|+.++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------RYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------CSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------cCCcCHHHHHHHHHHH
Confidence 4789999999998888888999999999999999999999999999999872 1579999999999998
Q ss_pred c
Q 016044 340 R 340 (396)
Q Consensus 340 ~ 340 (396)
.
T Consensus 69 ~ 69 (82)
T 2dzn_B 69 V 69 (82)
T ss_dssp C
T ss_pred H
Confidence 4
No 99
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.92 E-value=5e-10 Score=98.18 Aligned_cols=127 Identities=16% Similarity=0.235 Sum_probs=78.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH--------cC-CcEEEEecccccchhh-------------ch--HHHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE--------SG-AVFINVRISNLMSKWF-------------GD--AQKLVAAVFSLAY 179 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~--------~~-~~~~~i~~~~l~~~~~-------------g~--~~~~~~~~f~~a~ 179 (396)
.-.|++|+||||||++|.+++.. .| .+++..++.++..... ++ ....+...+..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 35789999999999999886543 34 6666666665532221 00 001122211111
Q ss_pred HhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCH
Q 016044 180 KLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDR 259 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~ 259 (396)
...+++|+|||++.+.+.+.... +. . .++..+.. .....+-+|.+|+.+..++.++++|+...++++.|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~-e~-~----rll~~l~~---~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGS-KI-P----ENVQWLNT---HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTC-CC-C----HHHHGGGG---TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccc-hh-H----HHHHHHHh---cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 23468999999999976543211 00 1 23333332 2244567788888899999999999998998887654
Q ss_pred H
Q 016044 260 K 260 (396)
Q Consensus 260 ~ 260 (396)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.87 E-value=1.4e-09 Score=101.31 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=66.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccC
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGA--VFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~--~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~ 197 (396)
+.+.+.++|+||||||||++|.+++...|. .|+.....+..+.+..+.+..+..+.......+ +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 344556899999999999999999986543 466663233333333455666666666555543 9999999998544
Q ss_pred CCC-CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHH
Q 016044 198 RRT-SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEA 243 (396)
Q Consensus 198 ~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 243 (396)
... +......+...+++..+.++.. ..++.+|+++|. ...+++
T Consensus 198 ~~~~s~~G~v~~~lrqlL~~L~~~~k--~~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 198 AGGNTTSGGISRGAFDLLSDIGAMAA--SRGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp ---------CCHHHHHHHHHHHHHHH--HHTCEEEEECCC-SSCSSS
T ss_pred cccccccchHHHHHHHHHHHHHHHHh--hCCCEEEEEeCC-cccchh
Confidence 322 1101111223344444433322 224577888884 444433
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.84 E-value=1.8e-08 Score=116.68 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=94.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD 202 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~ 202 (396)
..|+++.||+|||||.+++++|+.+|.+++.++|++-+.. ..+..+|..+... ++.+++||++.+... .
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~~~e----v 713 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRLDEK----V 713 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH----H
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhcChH----H
Confidence 3688999999999999999999999999999999876543 2234455555443 489999999987322 1
Q ss_pred hHHHHhhHHHHHHHhh---------ccCcCCCCcEEEEEecCC----CCCCcHHHHhccCCceEeCCCCHHHHHHHHHH
Q 016044 203 HEALTNMKTEFMALWD---------GFTTDQNARVMVLAATNR----PSELDEAILRRLPQAFEIGMPDRKERAQILKV 268 (396)
Q Consensus 203 ~~~~~~~~~~ll~~l~---------~~~~~~~~~v~vI~atn~----~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~ 268 (396)
...+...+..+...+. |-....+.++.+++|.|+ ...+++++++|| +.+.+..|+.+...+++-.
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHHH
Confidence 2222222222222221 111122456778899984 447999999999 7899999999998888643
No 102
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.77 E-value=1.2e-08 Score=88.75 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=63.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSD 202 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~ 202 (396)
.++++|+||||||||++|.++|+.++...+.+..+. +.+. +... ....+++|||+|.-
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f~----------l~~l--~~~kIiiLDEad~~-------- 115 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHFW----------LEPL--TDTKVAMLDDATTT-------- 115 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCGG----------GGGG--TTCSSEEEEEECHH--------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chhh----------hccc--CCCCEEEEECCCch--------
Confidence 467999999999999999999999865443321110 0000 0111 12369999999842
Q ss_pred hHHHHhhHHHHHHHhhccC----cCCC-----CcEEEEEecCCC---CCCcHHHHhccCCceEeCCC
Q 016044 203 HEALTNMKTEFMALWDGFT----TDQN-----ARVMVLAATNRP---SELDEAILRRLPQAFEIGMP 257 (396)
Q Consensus 203 ~~~~~~~~~~ll~~l~~~~----~~~~-----~~v~vI~atn~~---~~l~~~l~~R~~~~i~~~~P 257 (396)
....+...+...++|.. .... ....+|.|||.. +..-+.+.+|+ ..+.|+.|
T Consensus 116 --~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 116 --CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp --HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred --hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 11112223445566641 1111 123577788862 33347888998 67777743
No 103
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.74 E-value=4.5e-09 Score=98.61 Aligned_cols=98 Identities=19% Similarity=0.293 Sum_probs=58.2
Q ss_pred CcccccccChH----HHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEe
Q 016044 84 DVEFESIGGLE----TIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVR 155 (396)
Q Consensus 84 ~~~~~~i~G~~----~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~ 155 (396)
+.+|+++.+.. .+.+.+.+++.. +.. .+..+++|+||||||||++|+++++++ |.+++.++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~-------~~~----~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ-------YPS----AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH-------CSC----SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh-------ccc----cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46899988633 233333333321 111 125789999999999999999999854 47788888
Q ss_pred cccccchhhchH-HHHHHHHHHHHHHhCCcEEEEcccccc
Q 016044 156 ISNLMSKWFGDA-QKLVAAVFSLAYKLQPAIIFIDEVDSF 194 (396)
Q Consensus 156 ~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~vl~iDEid~l 194 (396)
++++........ .......+... ..+.+|+|||++..
T Consensus 189 ~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 189 FPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 776654332210 00111112222 24579999999764
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.61 E-value=6.5e-08 Score=112.87 Aligned_cols=139 Identities=19% Similarity=0.337 Sum_probs=87.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-CCcEEEEecccccchhhchHHHHHHHHHHHH----H------------HhCCcE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES-GAVFINVRISNLMSKWFGDAQKLVAAVFSLA----Y------------KLQPAI 185 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~-~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~------------~~~p~v 185 (396)
.+++||+||||||||+++......+ +.+++.++++.-.+. ..+...+... . ..+..|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4789999999999998876655444 566778888765432 1222222210 0 012259
Q ss_pred EEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcC------CCCcEEEEEecCCCC-----CCcHHHHhccCCceEe
Q 016044 186 IFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTD------QNARVMVLAATNRPS-----ELDEAILRRLPQAFEI 254 (396)
Q Consensus 186 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~~ 254 (396)
+||||++.-.... -+.+. ....+.+++.. .++... .-.++.+|+|+|+|. .+++++.||| ..+.+
T Consensus 1378 lFiDDiNmp~~D~-yGtQ~-~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i 1453 (3245)
T 3vkg_A 1378 VFCDEINLPSTDK-YGTQR-VITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLV 1453 (3245)
T ss_dssp EEETTTTCCCCCT-TSCCH-HHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEEC
T ss_pred EEecccCCCCccc-ccccc-HHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEe
Confidence 9999998632221 11122 22233333332 222211 124688999999884 5899999999 78999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 016044 255 GMPDRKERAQILKVILK 271 (396)
Q Consensus 255 ~~P~~~er~~il~~~l~ 271 (396)
+.|+.++...|+..++.
T Consensus 1454 ~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999876654
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.48 E-value=8.5e-07 Score=103.70 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=90.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccccccCCCCCch
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTSDH 203 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~~~~~~~ 203 (396)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-+.. ..+..+|.-+... ++..++|||+++... ..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~----vL 673 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEER----IL 673 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH----HH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHH----HH
Confidence 567899999999999999999999999999999875443 2233444444433 489999999997221 11
Q ss_pred HHHHhhHHHHHHHhh----------ccCcCCCCcEEEEEecCC----CCCCcHHHHhccCCceEeCCCCHHHHHHHHHH
Q 016044 204 EALTNMKTEFMALWD----------GFTTDQNARVMVLAATNR----PSELDEAILRRLPQAFEIGMPDRKERAQILKV 268 (396)
Q Consensus 204 ~~~~~~~~~ll~~l~----------~~~~~~~~~v~vI~atn~----~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~ 268 (396)
..+...+..+...+. |-...-+..+.+++|+|+ ...++++++.|| +.+.+..||.+...+|+-.
T Consensus 674 Svv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 674 SAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 111111111111111 211122456788999984 457999999999 7899999999988887643
No 106
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.46 E-value=3e-07 Score=83.53 Aligned_cols=28 Identities=39% Similarity=0.583 Sum_probs=24.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGA 149 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~ 149 (396)
+.++++|+||||||||++|+++|+..+.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3568999999999999999999997654
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.45 E-value=6.7e-07 Score=84.97 Aligned_cols=158 Identities=11% Similarity=0.097 Sum_probs=94.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CC-cEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEccccc-cccC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GA-VFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDS-FLGQ 197 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~-~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~-l~~~ 197 (396)
++.+||+||+|.||++.++.+++.+ +. ++..+.... . .+.......+..........|++|||+|. +...
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~ 92 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---N--TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAA 92 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---T--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTT
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---C--CCHHHHHHHhcCcCCccCCeEEEEECCCCCCChH
Confidence 4678999999999999999998854 22 222222111 0 12223332222222233457999999988 6211
Q ss_pred CCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCC------CCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhc
Q 016044 198 RRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRP------SELDEAILRRLPQAFEIGMPDRKERAQILKVILK 271 (396)
Q Consensus 198 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~------~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~ 271 (396)
..+.++..++. ++..+++|.+++.+ ..+.+++.+|+ ..+.+.+++..+....++..+.
T Consensus 93 -----------~~~aLl~~le~----p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 93 -----------INEQLLTLTGL----LHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp -----------HHHHHHHHHTT----CBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhc----CCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 12245554543 23345555444432 35678888898 7899999999999999999987
Q ss_pred CCCCC-CCCCHHHHHHhCCCCcHHHHHHHHHH
Q 016044 272 GEKVE-ENIDFDYLAGLCEGFTGSDLLEVCKQ 302 (396)
Q Consensus 272 ~~~~~-~~~~l~~la~~~~g~s~~di~~l~~~ 302 (396)
..+.. +.-.+..++..+.| +.+++.+.++.
T Consensus 157 ~~g~~i~~~a~~~l~~~~~g-dl~~~~~elek 187 (343)
T 1jr3_D 157 QLNLELDDAANQVLCYCYEG-NLLALAQALER 187 (343)
T ss_dssp HTTCEECHHHHHHHHHSSTT-CHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhch-HHHHHHHHHHH
Confidence 66543 22235566766665 44444444443
No 108
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.44 E-value=6.5e-07 Score=100.95 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=74.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccc----hhh------------chHHHHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMS----KWF------------GDAQKLVAAVFSLAY 179 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~----~~~------------g~~~~~~~~~f~~a~ 179 (396)
.+.++.+++|+||||||||+||.+++.+. |.....++...... ... ...+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 46778999999999999999999997764 55666666654321 111 245567777778888
Q ss_pred HhCCcEEEEccccccccCCC----CC--chHHHHhhHHHHHHHhhccCcCCCCcEEEEEe
Q 016044 180 KLQPAIIFIDEVDSFLGQRR----TS--DHEALTNMKTEFMALWDGFTTDQNARVMVLAA 233 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~~~~----~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 233 (396)
..+|++||||+++.+.+... .+ ....-.+.+.+++..+.+.... .++.+|++
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~--~~v~VI~t 1560 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLIFI 1560 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT--TTCEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh--CCcEEEEE
Confidence 88999999999998876321 11 1111245556666666666543 33444444
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.37 E-value=3.4e-06 Score=72.32 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=23.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVF 151 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~ 151 (396)
.+.|.||+|+||||+++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876544
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.16 E-value=3.6e-06 Score=83.14 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=88.9
Q ss_pred CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEe---------cC---CCCCCcHHHHhccCC
Q 016044 183 PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAA---------TN---RPSELDEAILRRLPQ 250 (396)
Q Consensus 183 p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a---------tn---~~~~l~~~l~~R~~~ 250 (396)
|+|+||||+|.|.. ...+.++..++. ++.+++++++ ++ .+..+++.+++|| .
T Consensus 296 ~~VliIDEa~~l~~-----------~a~~aLlk~lEe----~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~-~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-----------ECFTYLHRALES----SIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV-M 359 (456)
T ss_dssp ECEEEEESGGGCBH-----------HHHHHHHHHTTS----TTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTE-E
T ss_pred ceEEEEechhhcCH-----------HHHHHHHHHhhc----cCCCEEEEecCCccccccccccccccccCChhHHhhc-c
Confidence 36999999999831 233455555553 2344544455 32 2678999999999 5
Q ss_pred ceEeCCCCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 016044 251 AFEIGMPDRKERAQILKVILKGEKVE-ENIDFDYLAGLC-EGFTGSDLLEVCKQAAYFSIRELLDEERKGKPAAAPRPLS 328 (396)
Q Consensus 251 ~i~~~~P~~~er~~il~~~l~~~~~~-~~~~l~~la~~~-~g~s~~di~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~i~ 328 (396)
.+.|++|+.++..++++..+...... ++..+..++..+ .| +++....+++.|...|..+. ...|+
T Consensus 360 ~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~------------~~~v~ 426 (456)
T 2c9o_A 360 IIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING------------KDSIE 426 (456)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT------------CSSBC
T ss_pred eeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC------------CCccC
Confidence 57999999999999999887533322 122356677776 55 77777888887766665431 25799
Q ss_pred HHHHHHHHHhc
Q 016044 329 RLDLEKVLTTS 339 (396)
Q Consensus 329 ~~d~~~al~~~ 339 (396)
.+|+..++..+
T Consensus 427 ~~~v~~~~~~~ 437 (456)
T 2c9o_A 427 KEHVEEISELF 437 (456)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 111
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.10 E-value=4.6e-05 Score=77.61 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=97.0
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHH-------cCCcEEEEec
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE-------SGAVFINVRI 156 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~-------~~~~~~~i~~ 156 (396)
+.....++|.+...+.|.+.+... ....+-+.|+||+|+|||++|+.+++. .....+.++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~ 187 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV 187 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC
Confidence 345567999999999998766420 112467899999999999999998642 2112333333
Q ss_pred cccc-----chh------h-----------chHHHHHHHHHHHHHH-hCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 157 SNLM-----SKW------F-----------GDAQKLVAAVFSLAYK-LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 157 ~~l~-----~~~------~-----------g~~~~~~~~~f~~a~~-~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
+... ... . ...+.....+...... .+|.+|+||+++.. ..
T Consensus 188 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~~ 250 (591)
T 1z6t_A 188 GKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------WV 250 (591)
T ss_dssp ESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------HH
T ss_pred CCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------HH
Confidence 2210 000 0 0111122222222222 25789999999752 11
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEe---CCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCC
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEI---GMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEG 290 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~---~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g 290 (396)
+. .+ +.+..||.||..+..... . + ...+.+ ...+.++-.+++...+.............+++.+.|
T Consensus 251 l~---~l----~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 251 LK---AF----DSQCQILLTTRDKSVTDS-V--M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 319 (591)
T ss_dssp HH---TT----CSSCEEEEEESCGGGGTT-C--C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTT
T ss_pred HH---Hh----cCCCeEEEECCCcHHHHh-c--C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCC
Confidence 11 11 224566667664331110 0 0 233444 367899999999888754211112346788999998
Q ss_pred CcHHHHHHHH
Q 016044 291 FTGSDLLEVC 300 (396)
Q Consensus 291 ~s~~di~~l~ 300 (396)
+.- .|..+.
T Consensus 320 ~PL-al~~~a 328 (591)
T 1z6t_A 320 SPL-VVSLIG 328 (591)
T ss_dssp CHH-HHHHHH
T ss_pred CcH-HHHHHH
Confidence 653 444443
No 112
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.09 E-value=1.5e-06 Score=83.44 Aligned_cols=105 Identities=20% Similarity=0.229 Sum_probs=61.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccccchhhchHHHHHHHHHHHHHHhCCcEEEEcccccccc-CC
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLG-QR 198 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~-~~ 198 (396)
..++..++|+||||+||||++++++...+..++.+..+.- . ....+. ...+..++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~----~~~~lg------~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R----LNFELG------VAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T----HHHHHG------GGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h----HHHHHH------HhcchhHHHHHHHHHHHHHHh
Confidence 4556789999999999999999999988776655433221 0 011111 122446789999998764 22
Q ss_pred CC-CchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHh
Q 016044 199 RT-SDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILR 246 (396)
Q Consensus 199 ~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~ 246 (396)
.. ...... ....+...++|. +.++.++|+++.+ +++++
T Consensus 234 ~l~~~~~~~--~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~ 272 (377)
T 1svm_A 234 DLPSGQGIN--NLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFP 272 (377)
T ss_dssp TCCCCSHHH--HHHTTHHHHHCS-------SCEEECCSSSCCE-EECCC
T ss_pred hccccCcch--HHHHHHHHhcCC-------CeEeeccCchhhH-HHhhc
Confidence 11 111100 112333445542 3567778888877 44444
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.98 E-value=7.1e-05 Score=66.16 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=26.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVR 155 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~ 155 (396)
+.+...++|+||+|+|||++++.++... +..++.++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4455678999999999999999998643 44444444
No 114
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.97 E-value=4.4e-05 Score=72.51 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=52.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch----------------hhchHHHHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK----------------WFGDAQKLVAAVFSLAY 179 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 179 (396)
.+.+..-++|+||||+|||+|+..++... +..+++++....... .....+..+..+.....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 35666778999999999999999998753 566677776543221 01123333333333344
Q ss_pred HhCCcEEEEcccccccc
Q 016044 180 KLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~ 196 (396)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46789999999998865
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.91 E-value=9.4e-05 Score=64.86 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
+.+..-++|+||||+|||++++.++...+...+.++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 556677899999999999999999886677777777644
No 116
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.89 E-value=2.7e-05 Score=66.11 Aligned_cols=35 Identities=11% Similarity=0.307 Sum_probs=30.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS 157 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~ 157 (396)
+..|+|.|+||+||||+++.++..++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 35689999999999999999999999888876653
No 117
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.89 E-value=4.5e-05 Score=68.08 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=49.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH--c-------CCcEEEEecccccch-----h---h------------------
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKE--S-------GAVFINVRISNLMSK-----W---F------------------ 164 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~--~-------~~~~~~i~~~~l~~~-----~---~------------------ 164 (396)
+.+..-++|+||||+|||++++.++.. . +...+.++....... . .
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 555677899999999999999999984 2 445677765441100 0 0
Q ss_pred -chHHHHHHHHHHHHHHhCCcEEEEccccccccC
Q 016044 165 -GDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 165 -g~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~ 197 (396)
.+....+..+........|.+|+||++..+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 011112222333444557899999999987644
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.88 E-value=9.7e-05 Score=70.54 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=51.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhh----------------chHHHHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWF----------------GDAQKLVAAVFSLAY 179 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~----------------g~~~~~~~~~f~~a~ 179 (396)
.+.+..-++|+||||+|||++|..++... +.+++.++...-..... ...+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 35566779999999999999999987753 56777777644322210 122333333333333
Q ss_pred HhCCcEEEEcccccccc
Q 016044 180 KLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~ 196 (396)
...+++|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 45689999999999874
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.84 E-value=3.4e-05 Score=73.29 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=50.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh----hc------------hHHHHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW----FG------------DAQKLVAAVFSLAY 179 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~----~g------------~~~~~~~~~f~~a~ 179 (396)
.+.+..-++|+||||+|||++|..++... +...+.++........ .| ..+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 35566779999999999999999998643 5566666654322111 11 22333333333333
Q ss_pred HhCCcEEEEcccccccc
Q 016044 180 KLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~ 196 (396)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 55689999999999863
No 120
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.82 E-value=0.00055 Score=60.39 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=80.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccc--------ccchhh----------ch--HHHHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISN--------LMSKWF----------GD--AQKLVAAVFSLAYK 180 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~--------l~~~~~----------g~--~~~~~~~~f~~a~~ 180 (396)
..+++.|+||+|||+++-.+|..+ |..++.++... +..... +. .+..+..+ ..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~----L~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDAL----LK 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHH----HH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHH----Hh
Confidence 569999999999999999888754 66655444421 111000 00 00112221 22
Q ss_pred hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCC------------------CCCCcH
Q 016044 181 LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNR------------------PSELDE 242 (396)
Q Consensus 181 ~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~------------------~~~l~~ 242 (396)
..|.++++||+-.......... ..-. .+...+ +..+-+++|+|- .+.+++
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~--~~~q---DV~~~l-------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHT--KRWQ---DIQELL-------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSS--BHHH---HHHHHH-------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred cCCCEEEEeCCCCCCcccchhH--HHHH---HHHHHH-------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 4689999999876422211110 0011 111111 223456677762 246778
Q ss_pred HHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCcHHHHHHHHH
Q 016044 243 AILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFTGSDLLEVCK 301 (396)
Q Consensus 243 ~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~di~~l~~ 301 (396)
.++++.+.+..+..|+.+ +++.+..+..+..+..-..+... |+.+-|.+|-.
T Consensus 151 ~~~~~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lre 202 (228)
T 2r8r_A 151 WVLQEAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALRE 202 (228)
T ss_dssp HHHHTCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHH
T ss_pred HHHhhCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHH
Confidence 888888777777777665 33334444333333322333322 55565555543
No 121
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.79 E-value=9.1e-05 Score=70.22 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=51.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEecccccch-----h---------------------
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISNLMSK-----W--------------------- 163 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~l~~~-----~--------------------- 163 (396)
.+.+..-++|+||||+|||++|..++... +...++++....+.. .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 36666778999999999999999998862 456777776542110 0
Q ss_pred -hchHHHHHHHHHHHHHH--hCCcEEEEccccccccC
Q 016044 164 -FGDAQKLVAAVFSLAYK--LQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 164 -~g~~~~~~~~~f~~a~~--~~p~vl~iDEid~l~~~ 197 (396)
..+....+..+...... ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 00111222223344444 56789999999998643
No 122
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.79 E-value=0.00029 Score=77.69 Aligned_cols=177 Identities=14% Similarity=0.123 Sum_probs=100.0
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc-------CCcEEEEec
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES-------GAVFINVRI 156 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~-------~~~~~~i~~ 156 (396)
+..-..++|.++..++|.+.+... ....+-+.|+|+.|+|||+||+.+++.. ...++.++.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 345567999999999998876421 1124668899999999999999987642 122334443
Q ss_pred ccccchh-h--------------------chHHHHHHHHHHHHHH--hCCcEEEEccccccccCCCCCchHHHHhhHHHH
Q 016044 157 SNLMSKW-F--------------------GDAQKLVAAVFSLAYK--LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEF 213 (396)
Q Consensus 157 ~~l~~~~-~--------------------g~~~~~~~~~f~~a~~--~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 213 (396)
+...... . ......+...+..... .++.+|+||+++.. .
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-----------------~- 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-----------------W- 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-----------------H-
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-----------------H-
Confidence 3311100 0 0001111111111111 23689999999853 1
Q ss_pred HHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCC-CCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCc
Q 016044 214 MALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGM-PDRKERAQILKVILKGEKVEENIDFDYLAGLCEGFT 292 (396)
Q Consensus 214 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~-P~~~er~~il~~~l~~~~~~~~~~l~~la~~~~g~s 292 (396)
.+..+ ..+..||.||..+..... . ......+.++. .+.++-.+++................++++.+.|..
T Consensus 250 --~~~~~----~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 250 --VLKAF----DNQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp --HHTTT----CSSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred --HHHhh----cCCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 12222 223467777765432211 0 11235677775 889999999988775433222233678999999864
Q ss_pred HHHHHHH
Q 016044 293 GSDLLEV 299 (396)
Q Consensus 293 ~~di~~l 299 (396)
- .|+.+
T Consensus 322 L-al~~~ 327 (1249)
T 3sfz_A 322 L-VVSLI 327 (1249)
T ss_dssp H-HHHHH
T ss_pred H-HHHHH
Confidence 3 44443
No 123
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.79 E-value=6.8e-05 Score=71.36 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=50.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh----h------------chHHHHHHHHHHHHHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW----F------------GDAQKLVAAVFSLAYK 180 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~----~------------g~~~~~~~~~f~~a~~ 180 (396)
+.+..-++|+|+||+|||++|..++... +.+++.++........ . ...+.....+-...+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 5566779999999999999999998753 5677777764322111 0 0122222222223345
Q ss_pred hCCcEEEEcccccccc
Q 016044 181 LQPAIIFIDEVDSFLG 196 (396)
Q Consensus 181 ~~p~vl~iDEid~l~~ 196 (396)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999999864
No 124
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.79 E-value=6.9e-05 Score=70.46 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=51.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEecccccc-h-------hh----------------c
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISNLMS-K-------WF----------------G 165 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~l~~-~-------~~----------------g 165 (396)
.+.+..-++|+||||+|||++|..++... +...++++...... . .. .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 35566778999999999999999998864 45677777654210 0 00 0
Q ss_pred hHH---HHHHHHHHHHHH-hCCcEEEEcccccccc
Q 016044 166 DAQ---KLVAAVFSLAYK-LQPAIIFIDEVDSFLG 196 (396)
Q Consensus 166 ~~~---~~~~~~f~~a~~-~~p~vl~iDEid~l~~ 196 (396)
..+ ..+..+...... ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 111 123334444444 6789999999999864
No 125
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.75 E-value=1.5e-05 Score=68.20 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=29.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
++.|+|.|+|||||||+++.++..+|.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999999887654
No 126
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.74 E-value=0.00013 Score=65.94 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=32.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345678999999999999999999999866677776655
No 127
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.74 E-value=0.00014 Score=67.12 Aligned_cols=38 Identities=34% Similarity=0.475 Sum_probs=30.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
.+..++|.||||+||||+++.++.+++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 35678999999999999999999988545566665443
No 128
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=2.1e-05 Score=68.40 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=29.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+...++|.|||||||||+++.++..++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3467999999999999999999999998886543
No 129
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.67 E-value=0.00025 Score=80.35 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=54.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchhh----c--------hHHHHHHHHHHHHH----
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKWF----G--------DAQKLVAAVFSLAY---- 179 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~~----g--------~~~~~~~~~f~~a~---- 179 (396)
.+.+...++|+|+||+|||++|..+|..+ +.++++++......... | ..+..+..++..++
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 47778889999999999999999998865 45688888766554431 1 00011233333333
Q ss_pred HhCCcEEEEcccccccc
Q 016044 180 KLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 180 ~~~p~vl~iDEid~l~~ 196 (396)
...|++|+||.++.+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 36789999999999875
No 130
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.64 E-value=0.00026 Score=63.27 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=21.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIA 144 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala 144 (396)
+.+..-+.|.||+|+||||+++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4455678999999999999999998
No 131
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.61 E-value=0.00027 Score=68.23 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=48.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEecccccch--------hhc----------------
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISNLMSK--------WFG---------------- 165 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~l~~~--------~~g---------------- 165 (396)
.+.+..-+.|+||||||||+|++.++-.. +...++++....... .++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 35666778999999999999999876432 234666765442110 000
Q ss_pred ---hHHHHHHHHHHHHHHhCCcEEEEccccccccC
Q 016044 166 ---DAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQ 197 (396)
Q Consensus 166 ---~~~~~~~~~f~~a~~~~p~vl~iDEid~l~~~ 197 (396)
.....+..+........|.+|+||++..+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 01112222333344567899999999887654
No 132
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.59 E-value=4e-05 Score=65.31 Aligned_cols=32 Identities=50% Similarity=0.796 Sum_probs=28.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+..|+|+|+||+||||+++.++..++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45799999999999999999999999877654
No 133
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.59 E-value=4.2e-05 Score=64.41 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=27.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
-|+|.|+|||||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876654
No 134
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.59 E-value=0.00055 Score=68.56 Aligned_cols=74 Identities=16% Similarity=0.315 Sum_probs=52.0
Q ss_pred cEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC--CCcHHHHhccCCceEeCCCCHHH
Q 016044 184 AIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS--ELDEAILRRLPQAFEIGMPDRKE 261 (396)
Q Consensus 184 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~--~l~~~l~~R~~~~i~~~~P~~~e 261 (396)
-+|+|||++.+..... ......+..+... . ...++.+|.+|.+|. .++..++..|...+.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~----G--Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQK----A--RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHH----C--TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHH----H--hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHH
Confidence 4899999998854321 1122222222221 1 245788999999887 78999999999999999999988
Q ss_pred HHHHHH
Q 016044 262 RAQILK 267 (396)
Q Consensus 262 r~~il~ 267 (396)
...++.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 888874
No 135
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.58 E-value=0.00021 Score=66.27 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=47.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEEecccccchh----------------hchHHHH-HHHHHHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES-----GAVFINVRISNLMSKW----------------FGDAQKL-VAAVFSL 177 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~-----~~~~~~i~~~~l~~~~----------------~g~~~~~-~~~~f~~ 177 (396)
+.+. -++++||||+|||+|+-.++... +..+++++...-.... ....+.. +. +...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~-i~~~ 103 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRID-MVNQ 103 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHH-HHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHH-HHHH
Confidence 4444 57899999999999988776543 5677788765432210 0122332 22 1222
Q ss_pred ---HHHhCCcEEEEcccccccc
Q 016044 178 ---AYKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 178 ---a~~~~p~vl~iDEid~l~~ 196 (396)
.....|.+|+||-+..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2345789999999999975
No 136
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.57 E-value=4.2e-05 Score=65.76 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=28.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
.+..|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 356789999999999999999999999877653
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.56 E-value=0.00087 Score=59.65 Aligned_cols=37 Identities=35% Similarity=0.485 Sum_probs=27.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEec
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRI 156 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~ 156 (396)
+.+..-++|+||||+|||+++..++.. .+...+.++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 555667899999999999999888653 2445555543
No 138
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.56 E-value=3.9e-05 Score=65.13 Aligned_cols=30 Identities=37% Similarity=0.662 Sum_probs=27.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
.++|.|+|||||||+++.++..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887653
No 139
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.56 E-value=0.0002 Score=63.24 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+.+..-+.|.||+|+||||+++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5555678999999999999999999743
No 140
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.54 E-value=4.6e-05 Score=64.18 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=28.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
..++|.|+|||||||+++.++..+|.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57999999999999999999999999887543
No 141
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.54 E-value=4.3e-05 Score=65.32 Aligned_cols=31 Identities=29% Similarity=0.605 Sum_probs=27.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
.|+|.|+|||||||+++.++..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999998876543
No 142
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.53 E-value=4.6e-05 Score=65.36 Aligned_cols=32 Identities=44% Similarity=0.679 Sum_probs=27.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH-cCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE-SGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~-~~~~~~~i 154 (396)
+..++|+|+|||||||+++.++.. +|.+++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999998 68766544
No 143
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.50 E-value=7.9e-05 Score=62.88 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=26.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
..+.|.||+||||||+++.++..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999999999999876553
No 144
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.50 E-value=8.9e-05 Score=69.27 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=31.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
..++|.||+|||||++++.+|..++..++.+|...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 568999999999999999999999988888876544
No 145
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.50 E-value=0.0002 Score=70.66 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=33.6
Q ss_pred CCCCCccccccc-ChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 80 PDHIDVEFESIG-GLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 80 ~~~~~~~~~~i~-G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+...+.+|+++- ++..+...+...+. .. ...++|.|+||||||+++.+++..+
T Consensus 16 ~~~~p~~~~~Ln~~Q~~av~~~~~~i~----------~~-----~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 16 PRGSHMTFDDLTEGQKNAFNIVMKAIK----------EK-----KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----CCSSCCCHHHHHHHHHHHHHHH----------SS-----SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCccccCCHHHHHHHHHHHHHHh----------cC-----CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345567888874 45555554433332 11 2379999999999999999998765
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.49 E-value=0.0035 Score=58.17 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
++.-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 45678899999999999999998754 4455555543
No 147
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.49 E-value=0.00014 Score=62.45 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=22.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH---cCCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE---SGAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~---~~~~~~~i 154 (396)
.-++++||+|+||||++..++.. .|...+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45789999999999999666654 35544443
No 148
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.48 E-value=6.9e-05 Score=65.09 Aligned_cols=32 Identities=41% Similarity=0.603 Sum_probs=27.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34589999999999999999999999887654
No 149
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.47 E-value=0.00037 Score=66.17 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=30.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEEeccc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---------GAVFINVRISN 158 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---------~~~~~~i~~~~ 158 (396)
+.+..-+.|+||||+|||++++.++... +...++++..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 5556678999999999999999999875 23556666543
No 150
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.47 E-value=6.3e-05 Score=64.59 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=27.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999999876543
No 151
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.46 E-value=6.8e-05 Score=64.58 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=28.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+..|+|.|+|||||||+++.++..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 456899999999999999999999998766543
No 152
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.45 E-value=8.8e-05 Score=65.46 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=28.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
...++-|+|.||||+||+|.|+.|++.+|.+.++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 3446778899999999999999999999876553
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.44 E-value=8.2e-05 Score=67.35 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=29.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS 157 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~ 157 (396)
-++|.|||||||||+|+.+|..++..++..+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999988877653
No 154
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.43 E-value=0.00011 Score=64.77 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 46789999999999999999999999876654
No 155
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.43 E-value=7e-05 Score=62.98 Aligned_cols=29 Identities=45% Similarity=0.696 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
-|+|.|||||||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887654
No 156
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.42 E-value=7.3e-05 Score=63.02 Aligned_cols=31 Identities=23% Similarity=0.551 Sum_probs=27.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
..|+|.|+|||||||+++.++..+|.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999877653
No 157
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.42 E-value=0.00033 Score=63.56 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=30.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEecccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRISNL 159 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~~~l 159 (396)
+.-|+|.|+||+||||+++.++.. .|.+++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 356899999999999999999997 7888876665443
No 158
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.41 E-value=0.00027 Score=66.18 Aligned_cols=28 Identities=25% Similarity=0.198 Sum_probs=23.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
.+.+..-++|+||||+|||++|..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3556677899999999999999999875
No 159
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.41 E-value=0.0009 Score=67.50 Aligned_cols=166 Identities=14% Similarity=0.052 Sum_probs=89.2
Q ss_pred cChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHH----HcCCcE---EEEeccccc---
Q 016044 91 GGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAK----ESGAVF---INVRISNLM--- 160 (396)
Q Consensus 91 ~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~----~~~~~~---~~i~~~~l~--- 160 (396)
+|.+..+++|.+.+... . ....+.|.|+|+.|+|||+||+.+++ .....| +.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~--------~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM--------C---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHHHHHHHHH--------T---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCchHHHHHHHHHHhcc--------c---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 49999999998876421 0 11246788999999999999999996 232222 223333211
Q ss_pred -c----hh---hch-------------HHHHHHHHHHHHHHhC-CcEEEEccccccccCCCCCchHHHHhhHHHHHHHhh
Q 016044 161 -S----KW---FGD-------------AQKLVAAVFSLAYKLQ-PAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWD 218 (396)
Q Consensus 161 -~----~~---~g~-------------~~~~~~~~f~~a~~~~-p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 218 (396)
. .. .+. ....+...+......+ +.+|+||+++... ++ .+.
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~--~~~ 261 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI--RWA 261 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--HHH
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--ccc
Confidence 0 00 000 0011122222222333 6899999998631 11 111
Q ss_pred ccCcCCCCcEEEEEecCCCCCCcHHHHhccCCceEeCCCCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCCc
Q 016044 219 GFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGMPDRKERAQILKVILKGEKVEENI--DFDYLAGLCEGFT 292 (396)
Q Consensus 219 ~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~~~~P~~~er~~il~~~l~~~~~~~~~--~l~~la~~~~g~s 292 (396)
.. .+..||.||....... . .......+.++..+.++-.+++...........+. ....+++.+.|..
T Consensus 262 ~~-----~gs~ilvTTR~~~v~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 262 QE-----LRLRCLVTTRDVEISN-A-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp HH-----TTCEEEEEESBGGGGG-G-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred cc-----CCCEEEEEcCCHHHHH-H-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 11 2345666776432111 0 00112457889999999999999885433210111 1456777777754
No 160
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.41 E-value=8.5e-05 Score=63.76 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=30.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
++..+.|.||||+||||+++.++...+...+.++..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 3466899999999999999999988776767776544
No 161
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.39 E-value=0.00011 Score=63.91 Aligned_cols=32 Identities=31% Similarity=0.559 Sum_probs=27.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+.-|+|.|++|+||||+++.++..+|..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45699999999999999999999998776653
No 162
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.39 E-value=0.00062 Score=60.23 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=40.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccc-------ccchhhchH-H----HHHHHHHHHHHH----hCCc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISN-------LMSKWFGDA-Q----KLVAAVFSLAYK----LQPA 184 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~-------l~~~~~g~~-~----~~~~~~f~~a~~----~~p~ 184 (396)
.-++++||+|+||||++..++... |..++.+.... +.+. .|-. + .....++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 446788999999999998887654 55555553221 1111 1100 0 011233444433 2478
Q ss_pred EEEEcccccc
Q 016044 185 IIFIDEVDSF 194 (396)
Q Consensus 185 vl~iDEid~l 194 (396)
+|+|||++.+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999875
No 163
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.37 E-value=9.1e-05 Score=65.72 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 46799999999999999999999998776654
No 164
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.37 E-value=0.00011 Score=66.18 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=28.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
++..|+|.||||+||||+|+.+++.++.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 356799999999999999999999998776654
No 165
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.37 E-value=0.00011 Score=62.70 Aligned_cols=31 Identities=35% Similarity=0.633 Sum_probs=26.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
..++|.|+|||||||+++.+++.+|.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4689999999999999999999998766543
No 166
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.37 E-value=0.00012 Score=64.01 Aligned_cols=28 Identities=50% Similarity=0.841 Sum_probs=25.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
++|.||||+||+|.|+.|++.+|.+.++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7889999999999999999999987654
No 167
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.37 E-value=9.2e-05 Score=63.89 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=27.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+.-|+|.|+|||||||+++.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35689999999999999999999999766544
No 168
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.36 E-value=0.00011 Score=63.73 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
+.-|+|.|+|||||||+++.+++.+|.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 356899999999999999999999987666543
No 169
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.35 E-value=9.8e-05 Score=64.85 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=26.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
.|+|.|||||||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998877655
No 170
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.34 E-value=0.00011 Score=62.34 Aligned_cols=29 Identities=34% Similarity=0.499 Sum_probs=23.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHH-HcCCcEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK-ESGAVFI 152 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~-~~~~~~~ 152 (396)
.-|+|.|+||+||||+++.++. ..+..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999998 4554443
No 171
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.34 E-value=0.00011 Score=61.66 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=26.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
.|+|.|+|||||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999999877653
No 172
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.33 E-value=0.0001 Score=63.09 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=27.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35689999999999999999999999766654
No 173
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.33 E-value=0.0001 Score=64.65 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=26.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
.|+|.|||||||||+|+.++..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999877654
No 174
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.33 E-value=0.00038 Score=66.17 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=42.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEecc-ccc---------chhhchHHHHHHHHHHHHHHhCCcEEEEc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRIS-NLM---------SKWFGDAQKLVAAVFSLAYKLQPAIIFID 189 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~~-~l~---------~~~~g~~~~~~~~~f~~a~~~~p~vl~iD 189 (396)
..+++.||+|+||||+.++++... +..++.+.-. ++. ....+.........+..+...+|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 458899999999999999998754 3344433211 110 00011111122334555667799999999
Q ss_pred ccc
Q 016044 190 EVD 192 (396)
Q Consensus 190 Eid 192 (396)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 175
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.33 E-value=0.00018 Score=64.11 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999776654
No 176
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.33 E-value=0.0043 Score=66.33 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=34.2
Q ss_pred cChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 016044 91 GGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 91 ~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
+|.+..++.|.+.+... ...+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999988876420 11356899999999999999999863
No 177
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.32 E-value=0.00011 Score=62.56 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=23.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
+..|+|.|+|||||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356899999999999999999999998876
No 178
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.32 E-value=0.00019 Score=60.73 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=26.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
...++|.||+|+||||+++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3568999999999999999999988866554
No 179
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.31 E-value=0.00014 Score=62.17 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=23.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
.-|+|.|+|||||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 180
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.30 E-value=0.0002 Score=62.17 Aligned_cols=30 Identities=37% Similarity=0.669 Sum_probs=26.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
+.-+.|.||+|+||||+++.++..+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 456899999999999999999999876554
No 181
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.30 E-value=8.3e-05 Score=65.68 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=27.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
+..|+|.|||||||||+++.++..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4569999999999999999999999976544
No 182
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.28 E-value=0.0019 Score=58.97 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
+.+..-++|+||+|+||||++..++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344567899999999999999999863
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.28 E-value=0.0025 Score=54.94 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=66.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccc---------ccchhh-----------------chHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISN---------LMSKWF-----------------GDAQKLVAAV 174 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~---------l~~~~~-----------------g~~~~~~~~~ 174 (396)
..|++|+++|.||||+|-.+|-.. |..+..+.... +..... .+........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 458999999999999999987643 66666653211 222210 0112333444
Q ss_pred HHHHHH----hCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCCCCcHHHHhccCC
Q 016044 175 FSLAYK----LQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQ 250 (396)
Q Consensus 175 f~~a~~----~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~ 250 (396)
+..+.. ....+|+|||+.....-.--.. .+++..+.. .+.+.-+|.|+|.+ ++.+...-|.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~--------~ev~~~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD~ 173 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPL--------EEVISALNA----RPGHQTVIITGRGC---HRDILDLADT 173 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH--------HHHHHHHHT----SCTTCEEEEECSSC---CHHHHHHCSE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCH--------HHHHHHHHh----CcCCCEEEEECCCC---cHHHHHhCcc
Confidence 444443 2468999999976432221111 134444432 24566788888853 5677776655
Q ss_pred ceEe
Q 016044 251 AFEI 254 (396)
Q Consensus 251 ~i~~ 254 (396)
+-++
T Consensus 174 VTem 177 (196)
T 1g5t_A 174 VSEL 177 (196)
T ss_dssp EEEC
T ss_pred eeee
Confidence 5544
No 184
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.25 E-value=0.00013 Score=64.21 Aligned_cols=31 Identities=32% Similarity=0.592 Sum_probs=27.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
..|+|.|+|||||||+++.++..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
No 185
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.25 E-value=0.0043 Score=61.58 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=49.3
Q ss_pred EEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEEEecCCCC--CCcHHHHhccCCceEeCCCCHHHH
Q 016044 185 IIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPS--ELDEAILRRLPQAFEIGMPDRKER 262 (396)
Q Consensus 185 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~--~l~~~l~~R~~~~i~~~~P~~~er 262 (396)
+++|||+..+.... .......+..+...-. ..++.+|.+|.+|. .++..++..|..++.|...+..+.
T Consensus 300 vlvIDE~~~ll~~~----~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~ds 369 (512)
T 2ius_A 300 VVLVDEFADLMMTV----GKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDS 369 (512)
T ss_dssp EEEEETHHHHHHHH----HHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHH
T ss_pred EEEEeCHHHHHhhh----hHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHH
Confidence 89999998775311 1111222222222111 23577888888876 588889889989999999999999
Q ss_pred HHHHHH
Q 016044 263 AQILKV 268 (396)
Q Consensus 263 ~~il~~ 268 (396)
..++..
T Consensus 370 r~ilg~ 375 (512)
T 2ius_A 370 RTILDQ 375 (512)
T ss_dssp HHHHSS
T ss_pred HHhcCC
Confidence 888754
No 186
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.24 E-value=0.00035 Score=70.74 Aligned_cols=33 Identities=36% Similarity=0.406 Sum_probs=25.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
+.+++.||||||||+++.+++..+ +.+++.+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 568999999999999999998743 555555443
No 187
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.24 E-value=0.0027 Score=62.41 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=29.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEec
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRI 156 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~ 156 (396)
.+.+..-++|.|+||+|||+++..++... |.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 36666778999999999999999987743 556666654
No 188
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.19 E-value=0.0015 Score=58.29 Aligned_cols=34 Identities=29% Similarity=0.244 Sum_probs=27.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS 157 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~ 157 (396)
..++++||+|+|||.++.+++...+...+.+-+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3489999999999999999988887666665543
No 189
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.19 E-value=0.0027 Score=61.83 Aligned_cols=200 Identities=17% Similarity=0.136 Sum_probs=102.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch--------------------hhchHHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK--------------------WFGDAQKLVAAVFSLA 178 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~--------------------~~g~~~~~~~~~f~~a 178 (396)
+|.-+++.|++|+||||++..+|..+ |..+..+++...... ........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36778999999999999999998754 556666665432110 0112334445556666
Q ss_pred HHhCCcEEEEccccccccCCCCCchHHHHhhHHHHHHHhhccCcCCCCcEEEE-EecCCCCCCc--HHHHhccCC-ceEe
Q 016044 179 YKLQPAIIFIDEVDSFLGQRRTSDHEALTNMKTEFMALWDGFTTDQNARVMVL-AATNRPSELD--EAILRRLPQ-AFEI 254 (396)
Q Consensus 179 ~~~~p~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI-~atn~~~~l~--~~l~~R~~~-~i~~ 254 (396)
....+.+++||....+. ....... ++........ +..+++| -++...+.++ ..+...+.. .+-+
T Consensus 179 ~~~~~DvVIIDTaGrl~-----~d~~lm~----el~~i~~~~~---pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK-----EDKALIE----EMKQISNVIH---PHEVILVIDGTIGQQAYNQALAFKEATPIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSS-----CCHHHHH----HHHHHHHHHC---CSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEE
T ss_pred HhCCCCEEEEECCCccc-----chHHHHH----HHHHHHHhhc---CceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEE
Confidence 66667999999875431 1111111 2222111111 2334444 3433222111 122222221 1334
Q ss_pred CCCCHHHHHHHHHHHhc-----------CCCCC--CCCCHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH-----HHHHHh
Q 016044 255 GMPDRKERAQILKVILK-----------GEKVE--ENIDFDYLAGLCEGFTGSDLLEVCKQAAYFSIRE-----LLDEER 316 (396)
Q Consensus 255 ~~P~~~er~~il~~~l~-----------~~~~~--~~~~l~~la~~~~g~s~~di~~l~~~A~~~a~~~-----~~~~~~ 316 (396)
...|...+...+..... +..++ ...+.+.++...-|+ +|+..|++.|...--.+ ..+...
T Consensus 247 TKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~~~~~~k~~ 324 (443)
T 3dm5_A 247 TKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFKELEKEVEIKEEDIERFL 324 (443)
T ss_dssp ECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred ECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 44443333222211111 12221 224567787777654 58888888775532211 222222
Q ss_pred cCCCCCCCCCCCHHHHHHHHHhcccc
Q 016044 317 KGKPAAAPRPLSRLDLEKVLTTSRKT 342 (396)
Q Consensus 317 ~~~~~~~~~~i~~~d~~~al~~~~~~ 342 (396)
+ ...+.+||..-++.++.-
T Consensus 325 ~-------~~f~l~d~~~q~~~~~km 343 (443)
T 3dm5_A 325 R-------GKFTLKDMYAQLEAMRKM 343 (443)
T ss_dssp T-------TCCCHHHHHHHHHHHHTT
T ss_pred h-------CCcCHHHHHHHHHHHHhc
Confidence 2 348999999988887654
No 190
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.18 E-value=0.0045 Score=60.62 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=29.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEec
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRI 156 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~ 156 (396)
+.+..-++|.|+||+|||+++..+|... |.+++.++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 6666778999999999999999987642 556666654
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.18 E-value=0.00038 Score=59.09 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=30.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
+..+.|.|++||||||+++.++..+ |.+++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 4568899999999999999999987 8888887753
No 192
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.17 E-value=0.00032 Score=60.06 Aligned_cols=31 Identities=29% Similarity=0.259 Sum_probs=27.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKES---GAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~---~~~~~~i~ 155 (396)
-|.|.|++||||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 88888765
No 193
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.15 E-value=0.00057 Score=62.05 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=40.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEec--cccc--------chhhchHHHHHHHHHHHHHHhCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRI--SNLM--------SKWFGDAQKLVAAVFSLAYKLQPAIIFI 188 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~--~~l~--------~~~~g~~~~~~~~~f~~a~~~~p~vl~i 188 (396)
..-++|.||+|+||||++++++... ...++.... ..+. ...++.....++..+..+...+|.+|++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 4568899999999999999998754 222222211 0000 0000100012244455555668999999
Q ss_pred cccc
Q 016044 189 DEVD 192 (396)
Q Consensus 189 DEid 192 (396)
||.-
T Consensus 105 DEp~ 108 (261)
T 2eyu_A 105 GEMR 108 (261)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9973
No 194
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.14 E-value=0.00027 Score=61.97 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=26.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
.|+|.|+|||||||+++.++..+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877665
No 195
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.13 E-value=0.0036 Score=55.67 Aligned_cols=37 Identities=32% Similarity=0.363 Sum_probs=27.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH----cCCcEEEEec
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKE----SGAVFINVRI 156 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~----~~~~~~~i~~ 156 (396)
+.+..-++++|+||+|||++|..+|.. .+.+++.++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 556677899999999999999887643 3556665554
No 196
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.12 E-value=0.00037 Score=60.47 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=27.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
+.-+.|.||+||||||+++.++..+ |...+.++..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 4668899999999999999999987 5544455543
No 197
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.11 E-value=0.00033 Score=61.93 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=25.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
.|+|.|+|||||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999998765543
No 198
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.11 E-value=0.0002 Score=67.62 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=26.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
..++|.|+||+||||+++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 569999999999999999999998887744
No 199
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.10 E-value=0.00038 Score=61.35 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
..+.|.||+||||||+++.++..+|.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999876654
No 200
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.10 E-value=0.00041 Score=60.03 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=28.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-CCcEEEEec
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES-GAVFINVRI 156 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~-~~~~~~i~~ 156 (396)
+.-|.|.|++||||||+++.++..+ |.+++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4568999999999999999999998 577776653
No 201
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.08 E-value=0.00036 Score=60.27 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=25.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
.|.|.|++||||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999986653
No 202
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.07 E-value=0.0082 Score=55.91 Aligned_cols=37 Identities=27% Similarity=0.226 Sum_probs=28.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 5666779999999999999999998643 456666554
No 203
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.07 E-value=0.0014 Score=55.31 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=17.6
Q ss_pred CceEEEECCCCCcHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKA 142 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~a 142 (396)
+.-+.|.||+|+||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45688999999999999994
No 204
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.06 E-value=0.00027 Score=61.37 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=25.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
.|.|.|++||||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 887766543
No 205
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.05 E-value=0.0005 Score=59.06 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=26.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
|.|.|++||||||+++.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999988 888876543
No 206
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.03 E-value=0.0005 Score=61.21 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=27.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
+..+.|.||+||||||+++.++..+|.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3568999999999999999999999976654
No 207
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.03 E-value=0.00034 Score=60.48 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=27.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
..|.|+|++||||||+++.++..+|.+++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 34789999999999999999998898776543
No 208
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.02 E-value=0.00026 Score=60.56 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~ 148 (396)
.|+|.|+|||||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999875
No 209
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.01 E-value=0.0019 Score=72.36 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=59.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHH---HcCCcEEEEecccc----------------cchhhchHHHHHHHHHHHHHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAK---ESGAVFINVRISNL----------------MSKWFGDAQKLVAAVFSLAYK 180 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~---~~~~~~~~i~~~~l----------------~~~~~g~~~~~~~~~f~~a~~ 180 (396)
++..+-+.+|||+|||||++|-.++. ..|.....++...- .-......+..+..+...++.
T Consensus 1428 ~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s 1507 (1706)
T 3cmw_A 1428 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1507 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHc
Confidence 33445599999999999999987754 34666667766422 222344568888888888899
Q ss_pred hCCcEEEEccccccccCCC
Q 016044 181 LQPAIIFIDEVDSFLGQRR 199 (396)
Q Consensus 181 ~~p~vl~iDEid~l~~~~~ 199 (396)
..+++|++|.+..|.++..
T Consensus 1508 ~~~~~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1508 GAVDVIVVDSVAALTPKAE 1526 (1706)
T ss_dssp TCCSEEEESCSTTCCCTTT
T ss_pred CCCCEEEEccHHhCCcccc
Confidence 9999999999999987653
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.00 E-value=0.0083 Score=58.28 Aligned_cols=73 Identities=19% Similarity=0.104 Sum_probs=44.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccchh--------------------hchHHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSKW--------------------FGDAQKLVAAVFSLA 178 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~~--------------------~g~~~~~~~~~f~~a 178 (396)
++.-+++.||+|+||||++..+|..+ |..+..+++....... ...........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678899999999999999998754 5566555543221100 001122223333444
Q ss_pred HHhCCcEEEEcccccc
Q 016044 179 YKLQPAIIFIDEVDSF 194 (396)
Q Consensus 179 ~~~~p~vl~iDEid~l 194 (396)
....+.+++||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 4446789999987543
No 211
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.00 E-value=0.00039 Score=65.20 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=31.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
++.++|.||+|||||+++..+|+.++..+++.|...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 356899999999999999999999998888877653
No 212
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.99 E-value=0.00056 Score=61.67 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=28.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
..+.|.|++|+||||+++.++..+|.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 56999999999999999999999998877643
No 213
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.98 E-value=0.0017 Score=56.75 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=28.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEeccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRISN 158 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~~~ 158 (396)
+..++|.|++|+||||+++.++..+ |.+++.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 4668899999999999999999865 45577776543
No 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.98 E-value=0.00052 Score=61.59 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=26.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
+.-+.|.||+|+||||+++.+++.+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999887544
No 215
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.97 E-value=0.00053 Score=63.42 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=31.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNL 159 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l 159 (396)
+.-++|.||+|+|||+++..+|..++..+++.|...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4568899999999999999999999988888776544
No 216
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.95 E-value=0.00043 Score=59.76 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+..|.|.|++||||||+++.++.. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 466899999999999999999998 7776543
No 217
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.93 E-value=0.00062 Score=59.01 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=27.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
.+.|.|++||||||+++.++..+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998776543
No 218
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.93 E-value=0.00051 Score=59.67 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=24.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
.+.|.||+||||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999987 7877764
No 219
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.92 E-value=0.00084 Score=60.55 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=26.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
...+.|.||+||||||+++.++..+|..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468899999999999999999999976653
No 220
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.89 E-value=0.00062 Score=59.12 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=24.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV 150 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~ 150 (396)
+.-|+|.|+|||||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3568999999999999999999988763
No 221
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.87 E-value=0.00028 Score=61.47 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV 150 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~ 150 (396)
+.-|+|.|+|||||||+++.++..++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999987544
No 222
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.84 E-value=0.0011 Score=59.59 Aligned_cols=39 Identities=13% Similarity=0.149 Sum_probs=31.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc--------EEEEecccccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV--------FINVRISNLMS 161 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~--------~~~i~~~~l~~ 161 (396)
+.-|.|.|++||||||+|+.++..++.+ ...++..++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4568899999999999999999998876 33566666654
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.83 E-value=0.00081 Score=58.42 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
.++.-++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456789999999999999999999874
No 224
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.82 E-value=0.00096 Score=63.85 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=41.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC----CcEEEEecc-cc--------cch-hhchHHHHHHHHHHHHHHhCCcEEE
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESG----AVFINVRIS-NL--------MSK-WFGDAQKLVAAVFSLAYKLQPAIIF 187 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~----~~~~~i~~~-~l--------~~~-~~g~~~~~~~~~f~~a~~~~p~vl~ 187 (396)
+...++|.||+|+||||++++++.... ..++.+..+ ++ ... .+|.....+...+..+....|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 345689999999999999999988542 333333211 00 000 0000011123344445556899999
Q ss_pred Ecccc
Q 016044 188 IDEVD 192 (396)
Q Consensus 188 iDEid 192 (396)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99984
No 225
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.81 E-value=0.00078 Score=62.43 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=31.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccccc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLM 160 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~l~ 160 (396)
+-++|.||+|||||+++..+|..++..+++.+...+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvY 40 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVY 40 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccce
Confidence 4578999999999999999999998888777765443
No 226
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.80 E-value=0.00037 Score=60.83 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGA 149 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~ 149 (396)
+.-|+|.|+|||||||+++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999997643
No 227
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.78 E-value=0.016 Score=56.62 Aligned_cols=38 Identities=26% Similarity=0.182 Sum_probs=29.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 119 LLGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 119 ~~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
++.+..-+++.|+||+|||++|..+|... |.++..++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 36666779999999999999999987643 566666654
No 228
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.75 E-value=0.0013 Score=57.74 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=26.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+.-|.|.|++||||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 35688999999999999999998 88766554
No 229
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.75 E-value=0.00063 Score=59.19 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=25.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc-CCcEEE
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES-GAVFIN 153 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~-~~~~~~ 153 (396)
++.-+.|.|++|+||||+++.++..+ +..++.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 34557899999999999999999877 554443
No 230
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.74 E-value=0.0013 Score=58.51 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=27.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
+..+.|.|++||||||+++.++..+|.+++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 4568899999999999999999999977654
No 231
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.0013 Score=56.14 Aligned_cols=34 Identities=32% Similarity=0.298 Sum_probs=26.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
+..++|.|+||+||||+++.++..+ +..+..++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 4668899999999999999999876 344555553
No 232
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.71 E-value=0.0011 Score=56.77 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=22.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGA 149 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~ 149 (396)
+.|+|.||+|+||||+++.+..+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 45999999999999999999887643
No 233
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.70 E-value=0.00086 Score=61.58 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
+.-|.|.|++||||||+++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3458899999999999999999 678766543
No 234
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.69 E-value=0.0014 Score=57.47 Aligned_cols=31 Identities=29% Similarity=0.600 Sum_probs=27.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
..+.|.|++|||||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4589999999999999999999999876554
No 235
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.67 E-value=0.00096 Score=62.68 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=28.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS 157 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~ 157 (396)
.-|+|.||+|+|||++|+.+|..++..+++.|.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4588999999999999999999999776666543
No 236
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.67 E-value=0.0007 Score=62.54 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=24.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-CCcEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES-GAVFIN 153 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~-~~~~~~ 153 (396)
.-|+|.|+||+||||+++.++..+ +..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 458999999999999999999874 655443
No 237
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.65 E-value=0.0016 Score=63.26 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=26.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
+.-|+|.|+||+||||+|+.++..++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4568899999999999999999998865544
No 238
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.65 E-value=0.00086 Score=57.88 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=28.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
.++++|.||+|+|||++|..++...+ .++..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~ 68 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD 68 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence 47899999999999999999998866 666655433
No 239
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.62 E-value=0.0013 Score=56.94 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
++.-+.|.||+|+||||+++.++...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999999876
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.0013 Score=55.84 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=22.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
.-+.|.||+|+||||+++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998754
No 241
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.61 E-value=0.0012 Score=63.23 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=29.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEEec
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRI 156 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~ 156 (396)
+.-++|.||+|+|||+++..+|..++..+++.+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3567899999999999999999999887776654
No 242
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.61 E-value=0.02 Score=56.95 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=29.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEec
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRI 156 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~ 156 (396)
+.+..-++|.|+||+|||+++..+|... |.+++.++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 5666778999999999999999998754 456666664
No 243
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.60 E-value=0.0013 Score=57.40 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.-+.|.||+|+||||+++.++..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998764
No 244
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.58 E-value=0.034 Score=52.12 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=28.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEec
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRI 156 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~ 156 (396)
+.+..-++|.|+||+|||+++..+|.. .+.++..++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 566677899999999999999999775 3566655554
No 245
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.58 E-value=0.0017 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCC
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGA 149 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~ 149 (396)
-+.|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986543
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.55 E-value=0.013 Score=54.12 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=27.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEecc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRIS 157 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~~ 157 (396)
++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35678999999999999999998643 5566666554
No 247
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.51 E-value=0.013 Score=60.22 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=32.2
Q ss_pred cChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEecc
Q 016044 91 GGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRIS 157 (396)
Q Consensus 91 ~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~~ 157 (396)
.-++.+++++...+.. ..-.|++||||||||+++-.+... .+..++.+..+
T Consensus 189 ~LN~~Q~~AV~~al~~----------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ----------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp TCCHHHHHHHHHHHHC----------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCHHHHHHHHHHhcC----------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3467788888665431 134689999999999765544432 25555555443
No 248
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.48 E-value=0.018 Score=49.43 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.1
Q ss_pred ceEEEECCCCCcHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLA 140 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la 140 (396)
+.+++.+|+|+|||..+
T Consensus 39 ~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAF 55 (207)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 57999999999999864
No 249
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.47 E-value=0.0018 Score=55.85 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.-+.|.||+|+||||+++.++....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35578999999999999999998753
No 250
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.46 E-value=0.0015 Score=61.48 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=43.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC--CcEEEEecccccc-----h---hhchHHHHHHHHHHHHHHhCCcEEEEcccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG--AVFINVRISNLMS-----K---WFGDAQKLVAAVFSLAYKLQPAIIFIDEVD 192 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~--~~~~~i~~~~l~~-----~---~~g~~~~~~~~~f~~a~~~~p~vl~iDEid 192 (396)
...+++.||+|+||||++++++.... ...+.++...... . ++.+.....+..+..+....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 35689999999999999999998653 2234444321110 0 110011123334455556789999999975
Q ss_pred c
Q 016044 193 S 193 (396)
Q Consensus 193 ~ 193 (396)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 4
No 251
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.40 E-value=0.0022 Score=55.75 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=27.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
.-|.|.|++|||||++++.+|..+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999874
No 252
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.40 E-value=0.0019 Score=56.16 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.-+.|.||+|+||||+++.++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45578999999999999999999877
No 253
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.39 E-value=0.0068 Score=61.58 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=31.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISN 158 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 158 (396)
+..|+|.|.||+||||++++++..+ |.+++.++...
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 4568999999999999999999998 99998887543
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.38 E-value=0.0018 Score=55.99 Aligned_cols=26 Identities=38% Similarity=0.668 Sum_probs=22.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
++.+.|.||+|+||||+++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999988653
No 255
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.37 E-value=0.015 Score=50.11 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=19.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
+.+++.+|+|+|||.++-..+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999988777654
No 256
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.35 E-value=0.0021 Score=54.88 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+-+.|.||+|+||||+++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4478999999999999999998653
No 257
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.33 E-value=0.022 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.9
Q ss_pred CceEEEECCCCCcHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIA 144 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala 144 (396)
...+++.||+|||||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3679999999999998766554
No 258
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.33 E-value=0.092 Score=51.66 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..+.-++|.||+|+||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 345668899999999999999999854
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.32 E-value=0.0042 Score=53.70 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=27.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEeccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISN 158 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~ 158 (396)
+.-+.|.|++|+||||+++.++..+ +..++..+...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 4568899999999999999999865 55565554433
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.30 E-value=0.0023 Score=55.72 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=22.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.-+.|.||+|+||||+++.++..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999998764
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.26 E-value=0.0038 Score=53.99 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=22.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
++-+.|.||+|+|||||+++++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998764
No 262
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.24 E-value=0.0079 Score=60.07 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=27.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEeccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG---AVFINVRISN 158 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~~~~ 158 (396)
+.-|+|.|.||+||||+++.++..++ .....++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 45688999999999999999999874 4444455443
No 263
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.21 E-value=0.003 Score=55.96 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=26.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEE
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESGAVFINV 154 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~~~~~~i 154 (396)
.+-|.||||+||||+|+.++..++.++++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 467899999999999999999999877654
No 264
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.21 E-value=0.015 Score=61.00 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=38.5
Q ss_pred CcccccccChHHHHHHHHHHHHccccC--hhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRR--PELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~--~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..+|+++.-.+...+.+.+.-..|... ..+... +.....+++.||+|+|||+++..++..
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~---l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL---YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH---HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHH---HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 356888877777777776655444321 111111 112356999999999999977777543
No 265
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.19 E-value=0.017 Score=54.16 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=34.2
Q ss_pred cccccccChHHHHHHHHHHHHccccCh--hhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHH
Q 016044 85 VEFESIGGLETIKQALYELVILPLRRP--ELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~~~--~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~ 145 (396)
.+|+++.-.+.+.+.+.+.-...+..- +.+.. .....+.+++.+|+|+|||..+-..+.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~--~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPL--FLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHH--HHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 468887777777777766432111100 01110 011136899999999999987655443
No 266
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.17 E-value=0.032 Score=55.79 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAI 143 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~al 143 (396)
+.+...++|.||+|||||||++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 445567899999999999999994
No 267
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.17 E-value=0.018 Score=53.88 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
++.-+.|.||+|+||||+++.++..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45668899999999999999999854
No 268
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.13 E-value=0.0032 Score=55.36 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
++.-+.|.||+|+||||+++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999876
No 269
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.13 E-value=0.016 Score=61.58 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=19.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
..-+.|.||.|+||||+.|.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34588999999999999999874
No 270
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.12 E-value=0.004 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+.|.||.|+||||+++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568899999999999999999976
No 271
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.10 E-value=0.0036 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
..-+.|.||+|+||||+++.++....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998764
No 272
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.09 E-value=0.02 Score=55.67 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=46.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEecccccchhhc--------------------hHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVRISNLMSKWFG--------------------DAQKLVAAVFSL 177 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~~~l~~~~~g--------------------~~~~~~~~~f~~ 177 (396)
+++.+++.|++|+||||++-.+|..+ |..+..+++......... .....+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 46778899999999999999998644 677777776543221100 112223444555
Q ss_pred HHHhCCcEEEEccccc
Q 016044 178 AYKLQPAIIFIDEVDS 193 (396)
Q Consensus 178 a~~~~p~vl~iDEid~ 193 (396)
+......+++||=...
T Consensus 179 ~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHTTCSEEEEECCCC
T ss_pred HHhCCCCEEEEECCCc
Confidence 5544568999987543
No 273
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.08 E-value=0.009 Score=57.90 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=34.3
Q ss_pred CcccccccChHHHHHHHHHHHHccccChhhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
..++++++-....+..+...+ ..+...+++.||+|+||||++++++....
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---------------~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---------------KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---------------TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---------------HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456777765555555554432 11224578999999999999999998764
No 274
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.07 E-value=0.043 Score=47.74 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=32.6
Q ss_pred CcccccccChHHHHHHHHHHHHcccc-C-hhhhhcCCCCCCCceEEEECCCCCcHHHH
Q 016044 84 DVEFESIGGLETIKQALYELVILPLR-R-PELFSHGKLLGPQKGVLLYGPPGTGKTML 139 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~-~-~~~~~~~~~~~~~~~vLL~GppGtGKT~l 139 (396)
..+|+++.-.+.+.+.+.+.-...+. . .+.+.. +...+.+++.+|+|+|||..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMP---IIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSSHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHH---HhcCCCEEEECCCCCcHHHH
Confidence 46799988788888888664211110 0 011111 11236799999999999976
No 275
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.02 E-value=0.0034 Score=62.54 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=41.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC--CcEEEEeccc-ccch-----------hhchHHHHHHHHHHHHHHhCCcEEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG--AVFINVRISN-LMSK-----------WFGDAQKLVAAVFSLAYKLQPAIIFI 188 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~--~~~~~i~~~~-l~~~-----------~~g~~~~~~~~~f~~a~~~~p~vl~i 188 (396)
+.++++.||+|+||||++++++.... ...+.+.... +... ..+.....+......+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45699999999999999999988663 2344444322 1100 00000011222333444568999999
Q ss_pred cccc
Q 016044 189 DEVD 192 (396)
Q Consensus 189 DEid 192 (396)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9974
No 276
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.01 E-value=0.025 Score=52.07 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=44.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch-------h--------h-----chHHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK-------W--------F-----GDAQKLVAAVFSLA 178 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~-------~--------~-----g~~~~~~~~~f~~a 178 (396)
++..+.+.|++|+||||++..+|..+ +..+..+++.-.... + . .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45668889999999999999998754 455555554211100 0 0 01112223445555
Q ss_pred HHhCCcEEEEcccccc
Q 016044 179 YKLQPAIIFIDEVDSF 194 (396)
Q Consensus 179 ~~~~p~vl~iDEid~l 194 (396)
....+.+++||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 4457799999996443
No 277
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.99 E-value=0.018 Score=57.03 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
.+..|+|.|++|+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35678999999999999999998754 566666665
No 278
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.98 E-value=0.005 Score=54.56 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=25.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC--CcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG--AVFIN 153 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~--~~~~~ 153 (396)
+.-+.|.||+|+||||+++.++..++ ..++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 45688999999999999999999886 34443
No 279
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.97 E-value=0.0045 Score=54.49 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
.+..-+.|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456688999999999999999998764
No 280
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.97 E-value=0.1 Score=45.25 Aligned_cols=58 Identities=17% Similarity=0.074 Sum_probs=34.3
Q ss_pred cccccccChHHHHHHHHHHHHc-cccCh-hhhhcCCCCCCCceEEEECCCCCcHHHHHHHHHH
Q 016044 85 VEFESIGGLETIKQALYELVIL-PLRRP-ELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~-~l~~~-~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~ 145 (396)
.+|+++.-.+.+.+.+.+.-.. |.... +.+.. +...+.+++.+|+|+|||..+-..+-
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ---AILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCCchhhhhhHHHH
Confidence 4688887777888887663211 11110 11111 11135699999999999987655443
No 281
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.95 E-value=0.012 Score=54.54 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345668899999999999999999864
No 282
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.95 E-value=0.03 Score=52.18 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=27.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
.++.-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345678999999999999999998754 555555554
No 283
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.94 E-value=0.032 Score=55.75 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=48.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch----------------------h----h--chHH
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK----------------------W----F--GDAQ 168 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~----------------------~----~--g~~~ 168 (396)
+.+..-++|.||+|+|||+|++.++... |...+.+...+-... . . -...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 4455678999999999999999998743 444444433211000 0 0 0223
Q ss_pred HHHHHHHHHHHHhCCcEEEEcccccccc
Q 016044 169 KLVAAVFSLAYKLQPAIIFIDEVDSFLG 196 (396)
Q Consensus 169 ~~~~~~f~~a~~~~p~vl~iDEid~l~~ 196 (396)
...+.++..+...+|.+|+||=+..+..
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHHh
Confidence 4445556666677899999996666643
No 284
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.93 E-value=0.0042 Score=52.78 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=27.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEEeccc
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVFINVRISN 158 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~~~i~~~~ 158 (396)
++++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 87877776544
No 285
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.93 E-value=0.021 Score=52.68 Aligned_cols=72 Identities=21% Similarity=0.102 Sum_probs=44.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecccccch-------h------------h-chHHHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRISNLMSK-------W------------F-GDAQKLVAAVFSLAY 179 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~~l~~~-------~------------~-g~~~~~~~~~f~~a~ 179 (396)
+.-+++.|++|+||||++..+|..+ +..+..+++...... + . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5567889999999999999998754 556666655422110 0 0 012223334445554
Q ss_pred HhCCcEEEEcccccc
Q 016044 180 KLQPAIIFIDEVDSF 194 (396)
Q Consensus 180 ~~~p~vl~iDEid~l 194 (396)
.....+++||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 456689999985443
No 286
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.92 E-value=0.0064 Score=52.25 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=25.3
Q ss_pred ceEEEECCCCCcHH-HHHHHHHHH--cCCcEEEEec
Q 016044 124 KGVLLYGPPGTGKT-MLAKAIAKE--SGAVFINVRI 156 (396)
Q Consensus 124 ~~vLL~GppGtGKT-~la~ala~~--~~~~~~~i~~ 156 (396)
.-.++|||.|+||| .|.+++.+. .+..++.+.+
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 44688999999999 888888663 4667777664
No 287
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.90 E-value=0.0019 Score=56.11 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~~ 148 (396)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 288
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.88 E-value=0.0053 Score=54.21 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=27.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
.-|.+.|++|||||++++.+|..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457889999999999999999999998865
No 289
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.86 E-value=0.0055 Score=54.75 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV 150 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~ 150 (396)
+.-+-|.||+|+||||+++.++..+|..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3457899999999999999999987754
No 290
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.84 E-value=0.03 Score=59.65 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
.-++|.||.|+||||+.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999843
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.82 E-value=0.0057 Score=56.65 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=24.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.+...+.|+||+|+|||||++.|+....
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 44556789999999999999999998763
No 292
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.81 E-value=0.0074 Score=50.77 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=24.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
..+++|.|++|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 479999999999999999999874 54443
No 293
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.79 E-value=0.027 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..++|+||+|+|||+|+..++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh
Confidence 45899999999999999988764
No 294
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.79 E-value=0.0044 Score=57.06 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=25.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEeccccc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG---AVFINVRISNLM 160 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~~~~l~ 160 (396)
.-|.|.||+|+||||+++.++..++ ..+..++..++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4578999999999999999998765 445556665554
No 295
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.76 E-value=0.069 Score=51.68 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=27.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
++..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45678889999999999999998854 455555555
No 296
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.61 E-value=0.041 Score=51.98 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVR 155 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~ 155 (396)
...|.|.|+||+||||++.+++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4568999999999999999998764 44444443
No 297
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.60 E-value=0.007 Score=51.97 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~ 147 (396)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 298
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.59 E-value=0.018 Score=54.63 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 345668899999999999999999864
No 299
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.56 E-value=0.015 Score=57.35 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+..|+|.|.||+||||+++.++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.54 E-value=0.005 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=16.0
Q ss_pred CceEEEECCCCCcHHHHHHHHH-HHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIA-KES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala-~~~ 147 (396)
+.-+.|.||+|+||||+++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4568899999999999999999 765
No 301
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.52 E-value=0.023 Score=52.88 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=22.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.-+.|.||+||||||+++.++..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44678999999999999999998764
No 302
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.46 E-value=0.0088 Score=52.16 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=26.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEe
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVR 155 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~ 155 (396)
-.|-|+|..||||||+++.++. +|.+++..|
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4588999999999999999988 898876554
No 303
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.46 E-value=0.0083 Score=55.66 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.-+.|.||+|+||||+++.++..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45578999999999999999998765
No 304
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.45 E-value=0.0095 Score=55.40 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.++.-+.|.||+|+||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 344567899999999999999999865
No 305
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.44 E-value=0.0091 Score=54.87 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEEe
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES----GAVFINVR 155 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~----~~~~~~i~ 155 (396)
+.+..-++|.||||+|||++++.++... |.+++.++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4455678999999999999999998753 43454444
No 306
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.42 E-value=0.0086 Score=60.48 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=29.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC----CcEEEEeccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG----AVFINVRISN 158 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~----~~~~~i~~~~ 158 (396)
+..|+|.|+||+||||+|++++..++ .+++.++...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 35688999999999999999999875 6777777543
No 307
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.42 E-value=0.0097 Score=54.75 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.-|.|.||+||||||+++.++..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45678999999999999999998764
No 308
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.41 E-value=0.012 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.-|.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999999984
No 309
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.41 E-value=0.0097 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+.-+.|.||+||||||+++.++..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999854
No 310
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.40 E-value=0.0072 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+.|.||+|+|||||++.++...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34568899999999999999998754
No 311
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.40 E-value=0.049 Score=47.90 Aligned_cols=54 Identities=19% Similarity=0.092 Sum_probs=31.9
Q ss_pred CcccccccChHHHHHHHHHHHHccccC-h-hhhhcCCCCCCCceEEEECCCCCcHHHHH
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRR-P-ELFSHGKLLGPQKGVLLYGPPGTGKTMLA 140 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~-~-~~~~~~~~~~~~~~vLL~GppGtGKT~la 140 (396)
..+|+++.-.+.+.+.+.+.-...+.. . +.+.. +...+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~---~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGL---ALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEEeCCCCcHHHHH
Confidence 357888887777777776532111100 0 01110 112367999999999999854
No 312
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.29 E-value=0.042 Score=48.64 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=31.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhc--CCCCCCCceEEEECCCCCcHHHHHH
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTMLAK 141 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~--~~~~~~~~~vLL~GppGtGKT~la~ 141 (396)
.+..+|+++.-.+.+.+.+.+.-. ..+..++. ...+...+.+++.+|+|+|||...-
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNF---TEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTC---CSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHCCC---CCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 345678887766777776654211 11111100 0001113679999999999997643
No 313
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.27 E-value=0.0084 Score=53.40 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
+..-+.|.||+|+|||||++.++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999874
No 314
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.26 E-value=0.0053 Score=55.50 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=23.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+.-|.|.|++|+||||+++.++..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999999999883
No 315
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.26 E-value=0.085 Score=55.33 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
.-+.|.||.|+||||+.|.++.
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 4588999999999999999976
No 316
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.25 E-value=0.047 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||||+||||+.++++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999998753
No 317
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.24 E-value=0.035 Score=52.85 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=22.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
....++|.||+|+|||++++.+++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 35679999999999999999998743
No 318
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.21 E-value=0.072 Score=55.22 Aligned_cols=57 Identities=21% Similarity=0.186 Sum_probs=33.2
Q ss_pred CcccccccChHHHHHHHHHHHH-ccccC-hhhhhcCCCCCCCceEEEECCCCCcHHHHHHH
Q 016044 84 DVEFESIGGLETIKQALYELVI-LPLRR-PELFSHGKLLGPQKGVLLYGPPGTGKTMLAKA 142 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~-~~l~~-~~~~~~~~~~~~~~~vLL~GppGtGKT~la~a 142 (396)
..+|+++.-.+.+++.+.+.-. .+... .+.+.. .+....++++.||+|+|||+.+-.
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~--~~~~~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK--GLLEGNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT--TTTTTCCEEEECCTTSCHHHHHHH
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH--HhcCCCcEEEEcCCCCcHHHHHHH
Confidence 4568887766666666654211 11000 112221 123357899999999999998843
No 319
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.18 E-value=0.0073 Score=53.33 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||+|+|||||++.++...
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4557899999999999999998754
No 320
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.17 E-value=0.011 Score=52.77 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.-+.|.||+|+|||||++.++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999754
No 321
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.17 E-value=0.014 Score=49.08 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=24.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINVR 155 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~ 155 (396)
.-+.|.|++|+||||++..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 458899999999999999998864 44444444
No 322
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.12 E-value=0.01 Score=53.77 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
+..-+.|.||+|+|||||++.++.-..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345678999999999999999987543
No 323
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.08 E-value=0.054 Score=47.34 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=30.5
Q ss_pred CCCcccccc-cChHHHHHHHHHHHHcccc-C-hhhhhcCCCCCCCceEEEECCCCCcHHHHHH
Q 016044 82 HIDVEFESI-GGLETIKQALYELVILPLR-R-PELFSHGKLLGPQKGVLLYGPPGTGKTMLAK 141 (396)
Q Consensus 82 ~~~~~~~~i-~G~~~~k~~l~~~v~~~l~-~-~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ 141 (396)
.+..+|++. .-...+.+.+.+.-...+. . .+.+.. +...+.+++.+|+|+|||..+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPI---ILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCChHHHHHH
Confidence 344677773 4445566666553211000 0 011110 1123679999999999997543
No 324
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.026 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
...|++.|++|+|||+++.++...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999874
No 325
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.04 E-value=0.011 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=21.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
+..-+.|.||+|+|||||++.++..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999864
No 326
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.01 E-value=0.0097 Score=51.88 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
.-+.|.||.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999874
No 327
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.00 E-value=0.012 Score=55.78 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|||||||.+.++.-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 455789999999999999999984
No 328
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.00 E-value=0.014 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.-+.|.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 458899999999999999998754
No 329
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.00 E-value=0.016 Score=48.83 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
.-.+|+||.|+|||+++++|+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3568999999999999999988665
No 330
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.99 E-value=0.014 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=21.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
+..-+.|.||.|+|||||++.++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999974
No 331
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.97 E-value=0.024 Score=56.91 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=28.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC----CcEEEEecccc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKESG----AVFINVRISNL 159 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~~----~~~~~i~~~~l 159 (396)
.+..+.|.|++||||||++++++..++ ..+..++...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 345688999999999999999999874 23444665444
No 332
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.97 E-value=0.024 Score=53.63 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=31.3
Q ss_pred cccccccChHHHHHHHHHHHHcccc-C-hhhhhcCCCCCCCceEEEECCCCCcHHHHHHHH
Q 016044 85 VEFESIGGLETIKQALYELVILPLR-R-PELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAI 143 (396)
Q Consensus 85 ~~~~~i~G~~~~k~~l~~~v~~~l~-~-~~~~~~~~~~~~~~~vLL~GppGtGKT~la~al 143 (396)
.+|++++-.+.+.+.+.+.-...+. . .+.+... ....++++++.+|+|+|||..+-..
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~-~~~~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLL-LHNPPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HCSSCCCEEEECCTTSCHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH-HcCCCCeEEEECCCCCcHHHHHHHH
Confidence 4677776666666666552111000 0 0011110 0112478999999999999865433
No 333
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.94 E-value=0.0099 Score=52.08 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=21.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||.|+|||||++.++...
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3558899999999999999998754
No 334
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.94 E-value=0.012 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+.|.||.|+|||||++.++...
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34568899999999999999998754
No 335
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.93 E-value=0.012 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+.|.||+|+|||||++.++...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44568899999999999999998743
No 336
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.89 E-value=0.012 Score=53.45 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+.|.||+|+|||||++.++...
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998754
No 337
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.85 E-value=0.011 Score=52.28 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||.|+|||||.+.++...
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999998754
No 338
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.85 E-value=0.013 Score=52.60 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|+|||||++.++..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999964
No 339
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.84 E-value=0.015 Score=55.43 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|||||||.+.++.-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 455789999999999999999984
No 340
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.84 E-value=0.015 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|||||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 455789999999999999999974
No 341
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.84 E-value=0.011 Score=53.34 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||.|+|||||++.++...
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999998754
No 342
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.84 E-value=0.011 Score=53.87 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||+|+|||||++.++...
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4558899999999999999998744
No 343
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.83 E-value=0.067 Score=52.51 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=32.2
Q ss_pred CcccccccChHHHHHHHHHHHHcccc--ChhhhhcCCCCCCCceEEEECCCCCcHHHHH
Q 016044 84 DVEFESIGGLETIKQALYELVILPLR--RPELFSHGKLLGPQKGVLLYGPPGTGKTMLA 140 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~--~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 140 (396)
..+|+++.-.+.+.+.|...-...+. ....+... ....++.+++.||+|+|||..+
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~i-l~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM-LAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH-TSBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-HcCCCCcEEEEcCCCCchhHHH
Confidence 35788888778877777542110000 00111110 0112478999999999999774
No 344
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.83 E-value=0.014 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+.|.||.|+|||||++.++...
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998754
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.82 E-value=0.015 Score=55.04 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|||||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 455789999999999999999973
No 346
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.82 E-value=0.011 Score=52.93 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||+|+|||||++.++...
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998754
No 347
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.82 E-value=0.28 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=18.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
+.+++.+|+|+|||..+-..+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 5699999999999988665554
No 348
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.80 E-value=0.016 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 349
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.80 E-value=0.031 Score=48.96 Aligned_cols=29 Identities=28% Similarity=0.230 Sum_probs=25.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVF 151 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~ 151 (396)
+.-|.|.|++|+||||+++.++..++...
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 35688999999999999999999998643
No 350
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.79 E-value=0.15 Score=45.70 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.4
Q ss_pred ceEEEECCCCCcHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAK 141 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ 141 (396)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 568999999999997643
No 351
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.78 E-value=0.012 Score=52.56 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=21.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||.|+|||||.+.++...
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3558899999999999999998754
No 352
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.78 E-value=0.027 Score=57.54 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=18.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
...++.||||||||+++..++..
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999988777654
No 353
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.77 E-value=0.027 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=19.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+.-|.|.|++|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999999876
No 354
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.77 E-value=0.016 Score=55.13 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|||||||.+.++.-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 456789999999999999999973
No 355
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.76 E-value=0.015 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~ 147 (396)
-+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 356
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.75 E-value=0.012 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||+|+|||||++.++...
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4568899999999999999998744
No 357
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.75 E-value=0.014 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+.|.||.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999998743
No 358
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.74 E-value=0.015 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~ 147 (396)
.+.|.||+|+||||+.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 359
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.73 E-value=0.02 Score=50.03 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=24.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES---GAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~---~~~~~~i 154 (396)
.-|.|.|++|+||||+++.++..+ |.+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 457889999999999999999876 3455444
No 360
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.73 E-value=0.068 Score=55.50 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=16.8
Q ss_pred CceEEEECCCCCcHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAK 141 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ 141 (396)
..++++.||+|+|||+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5789999999999998873
No 361
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.73 E-value=0.013 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
..-+.|.||.|+|||||++.++....
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45688999999999999999987543
No 362
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.72 E-value=0.03 Score=50.64 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|.|.|+||+|||++..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999763
No 363
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.70 E-value=0.015 Score=55.09 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|||||||.+.++.-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 355789999999999999999974
No 364
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.67 E-value=0.013 Score=55.19 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|||||||.+.++.-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 456789999999999999999974
No 365
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.67 E-value=0.12 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
...|+|.|.||+|||+++.++..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 45699999999999999999975
No 366
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.65 E-value=0.017 Score=57.29 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=23.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGA 149 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~ 149 (396)
..|+|.|.+||||||+++++++.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999874
No 367
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.65 E-value=0.2 Score=44.14 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=21.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEe
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVR 155 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~ 155 (396)
.-.+++||.|+|||+.+-..+.. .|..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34578999999999777655443 245555444
No 368
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.64 E-value=0.11 Score=48.62 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
...+.+.|+||+||||++.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998753
No 369
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.61 E-value=0.019 Score=55.84 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=27.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEecc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRIS 157 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~~ 157 (396)
+..+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 5679999999999999999998865 4556666554
No 370
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.60 E-value=0.021 Score=46.49 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~ 146 (396)
.+++.|++|+|||+++.++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 371
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.59 E-value=0.014 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||.|+|||||++.++...
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4558899999999999999998754
No 372
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.59 E-value=0.024 Score=49.10 Aligned_cols=25 Identities=32% Similarity=0.613 Sum_probs=22.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
...+++.|++|+|||+++.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 373
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.54 E-value=0.014 Score=52.42 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||.|+|||||++.++...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999998754
No 374
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.54 E-value=0.017 Score=55.11 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|||||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 355789999999999999999974
No 375
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.53 E-value=0.036 Score=54.34 Aligned_cols=34 Identities=29% Similarity=0.244 Sum_probs=27.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEEecc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKESGAVFINVRIS 157 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~~~~~~~i~~~ 157 (396)
..+++.+|+|+|||..+-.++...+...+.+-+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 4589999999999999988887777666666544
No 376
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.52 E-value=0.021 Score=54.28 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV 150 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~ 150 (396)
...+.|.||+|+|||||++.++......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3568999999999999999999976543
No 377
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.48 E-value=0.018 Score=54.66 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
...++|.||+|+||||++++++....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45799999999999999999998653
No 378
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.48 E-value=0.012 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..+.|.|++|+||||+++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998865
No 379
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.42 E-value=0.03 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~ 145 (396)
....|++.|++|+|||+|+.++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999976
No 380
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.39 E-value=0.02 Score=54.85 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~ 145 (396)
+..-+.|.||+||||||+.+.|+.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 446689999999999999999987
No 381
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.37 E-value=0.025 Score=50.23 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+.-|.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998866
No 382
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.36 E-value=0.024 Score=46.45 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+++.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999873
No 383
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.34 E-value=0.019 Score=48.40 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 016044 125 GVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~ 145 (396)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 384
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.29 E-value=0.014 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||+|||||||.+.++.-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 456789999999999999999973
No 385
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.29 E-value=0.031 Score=49.20 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGA 149 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~ 149 (396)
+.-|.|.|++|+||||+++.++..++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355788899999999999999986543
No 386
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.28 E-value=0.024 Score=46.85 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..+.|.|++|+|||+|.++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999986
No 387
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.26 E-value=0.027 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+++.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 388
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.21 E-value=0.11 Score=45.93 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=14.9
Q ss_pred ceEEEECCCCCcHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLA 140 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la 140 (396)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999764
No 389
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.20 E-value=0.0074 Score=58.77 Aligned_cols=57 Identities=5% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHhhccCcCCCCcEEEEEe-cCCCCCCcHHHHh--ccCCceEeCCCCHH-HHHHHH
Q 016044 206 LTNMKTEFMALWDGFTTDQNARVMVLAA-TNRPSELDEAILR--RLPQAFEIGMPDRK-ERAQIL 266 (396)
Q Consensus 206 ~~~~~~~ll~~l~~~~~~~~~~v~vI~a-tn~~~~l~~~l~~--R~~~~i~~~~P~~~-er~~il 266 (396)
..++++.|+..+|++... ..+ +++ ||+++.++++|++ ||+..|+++.|+.. .|.+|+
T Consensus 128 e~rvl~~LL~~~dg~~~~--~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 128 EERILDALLPPAKNQWGE--VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccccc--ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 356777888888887542 222 444 9999999999998 99999999999987 677765
No 390
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.20 E-value=0.036 Score=48.15 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG 148 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~ 148 (396)
...+++.|++|+|||+++.+++....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999998753
No 391
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.19 E-value=0.027 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+++.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999873
No 392
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.18 E-value=0.067 Score=51.33 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.1
Q ss_pred ceEEEECCCCCcHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAI 143 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~al 143 (396)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 57999999999999844433
No 393
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.17 E-value=0.021 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+..-+.|.||.|+|||||++.++...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34568899999999999999998743
No 394
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.15 E-value=0.021 Score=51.66 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=21.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
..-+.|.||+|+|||||.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999998754
No 395
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.13 E-value=0.044 Score=45.45 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~ 145 (396)
....|++.|++|+|||+++.++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999999976
No 396
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.13 E-value=0.026 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..+++.|++|+|||+++.++...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 397
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.10 E-value=0.028 Score=52.05 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=24.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFI 152 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~ 152 (396)
..+++|.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 478999999999999999999875 54443
No 398
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.10 E-value=0.031 Score=45.81 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+++.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999863
No 399
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.09 E-value=0.028 Score=46.44 Aligned_cols=22 Identities=50% Similarity=0.678 Sum_probs=19.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..|++.|++|+|||+|++++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4689999999999999999975
No 400
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.07 E-value=0.031 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||++++++...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 401
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.04 E-value=0.047 Score=57.31 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=18.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
...++.||||||||+++..++..
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999988777654
No 402
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.04 E-value=0.033 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+++.++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 403
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.02 E-value=0.17 Score=48.89 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc----CCcEEEEec
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKES----GAVFINVRI 156 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~~----~~~~~~i~~ 156 (396)
++++.+|+|+|||..+-.++... +...+.+-+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 68999999999999887776543 555555544
No 404
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.00 E-value=0.059 Score=48.43 Aligned_cols=22 Identities=41% Similarity=0.606 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~ 146 (396)
.|.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999763
No 405
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.00 E-value=0.032 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+++.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 406
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.96 E-value=0.033 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
...|++.|++|+|||+++.++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999873
No 407
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.95 E-value=0.02 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 121 GPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 121 ~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.+..-+.|.||+|+|||||++.++...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 345678999999999999999998743
No 408
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.94 E-value=0.032 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Q 016044 122 PQKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 122 ~~~~vLL~GppGtGKT~la~ala~~ 146 (396)
+..-+.|.||+|+|||||++.++.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3456889999999999999999874
No 409
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.88 E-value=0.031 Score=45.88 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
-.|++.|++|+|||+++.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 410
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.88 E-value=0.038 Score=48.28 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.-|.|.|++|+||||.++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999866
No 411
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.87 E-value=0.035 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||++++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999873
No 412
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.84 E-value=0.035 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
-.|++.|++|+|||+++.++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999999986
No 413
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.82 E-value=0.036 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 016044 125 GVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~~ 146 (396)
.+++.|++|+|||+++.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999764
No 414
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.82 E-value=0.034 Score=45.73 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 016044 125 GVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~ 145 (396)
.|++.|++|+|||+|+.++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999963
No 415
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.80 E-value=0.076 Score=47.72 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=19.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4589999999999999999976
No 416
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.79 E-value=0.033 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..+.|.|++|+|||+|+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999986
No 417
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.78 E-value=0.07 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
...+++.|.+|+|||+++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999998865
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.78 E-value=0.041 Score=45.03 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.-.+|+||.|+|||++..|++--+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998644
No 419
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.035 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
..-+.|.||.|||||||+|.++..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 456899999999999999999874
No 420
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.035 Score=45.55 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
-.|++.|++|+|||+++.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999999986
No 421
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.72 E-value=0.035 Score=46.28 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..+.|.|++|+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 422
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.71 E-value=0.037 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..|++.|++|+|||+|+.++..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999987
No 423
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.71 E-value=0.035 Score=56.48 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
+.+++.|+||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999999998887654
No 424
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.70 E-value=0.12 Score=49.15 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=31.7
Q ss_pred CcccccccChHHHHHHHHHHHHccccC--hhhhhcCCCCCCCceEEEECCCCCcHHHHHHH
Q 016044 84 DVEFESIGGLETIKQALYELVILPLRR--PELFSHGKLLGPQKGVLLYGPPGTGKTMLAKA 142 (396)
Q Consensus 84 ~~~~~~i~G~~~~k~~l~~~v~~~l~~--~~~~~~~~~~~~~~~vLL~GppGtGKT~la~a 142 (396)
..+|+++.-.+.+.+.+.+.-...+.. .+.+.. +...+.+++.+|+|+|||..+-.
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~---~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP---CIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEECCCSCSSSHHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHH---HhCCCCEEEECCCCCcccHHHHH
Confidence 357888777777777775531111000 011111 11135699999999999987533
No 425
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.66 E-value=0.024 Score=50.03 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
+.-+.|.|+.|+||||+++.++..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345789999999999999999887
No 426
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.64 E-value=0.032 Score=45.72 Aligned_cols=21 Identities=48% Similarity=0.805 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 016044 125 GVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~ 145 (396)
.+++.|++|+|||+|++++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999854
No 427
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.63 E-value=0.077 Score=48.12 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..|.|.|+||+|||+|..++..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4589999999999999999986
No 428
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.62 E-value=0.045 Score=54.88 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC---CcEEEEeccc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESG---AVFINVRISN 158 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~---~~~~~i~~~~ 158 (396)
+..|+|.|++|+||||+++.++..++ .++..++...
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 35688999999999999999998764 4566666443
No 429
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.59 E-value=0.036 Score=45.99 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
-.|++.|++|+|||+|+.++..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999975
No 430
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.59 E-value=0.041 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+++.++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999873
No 431
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.58 E-value=0.041 Score=46.52 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 432
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.56 E-value=0.045 Score=50.58 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=24.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAVFIN 153 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~~~~ 153 (396)
..|+||.|++|+|||++|-.+.. .|..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 58899999999999999988865 4555544
No 433
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.56 E-value=0.041 Score=46.32 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+++.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 434
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.55 E-value=0.038 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..|++.|++|+|||+|+.++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999999986
No 435
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.54 E-value=0.038 Score=46.45 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|++++...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 436
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.54 E-value=0.043 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999873
No 437
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.51 E-value=0.039 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 438
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.50 E-value=0.044 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+++.++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999873
No 439
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.50 E-value=0.074 Score=50.87 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=27.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
..++++.||+|+|||++++.++... +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4679999999999999999997753 566666664
No 440
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.49 E-value=0.097 Score=48.34 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
.-|.+.|.||+|||||..++..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4478999999999999999976
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.48 E-value=0.066 Score=52.13 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV 150 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~ 150 (396)
..-+.|.||+|||||||++.++......
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 4568899999999999999999977543
No 442
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.46 E-value=0.044 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56999999999999999999863
No 443
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.45 E-value=0.11 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..|.|.|.||+|||+|..++..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999976
No 444
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.41 E-value=0.054 Score=45.79 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999874
No 445
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.40 E-value=0.041 Score=45.62 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..|++.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999965
No 446
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.38 E-value=0.066 Score=56.25 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=17.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..+++.||||||||+++..+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999988766644
No 447
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.38 E-value=0.042 Score=46.00 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 448
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.37 E-value=0.026 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
...+.|.|++|+|||||.++++.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999864
No 449
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.37 E-value=0.1 Score=54.36 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..+.|.||.|+||||+.|.++.
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHh
Confidence 4578999999999999999976
No 450
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.35 E-value=0.46 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.9
Q ss_pred ceEEEECCCCCcHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIA 144 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala 144 (396)
..++|.||.|+||||+.|.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 568899999999999999984
No 451
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.34 E-value=0.048 Score=45.98 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|+|.|++|+|||+|+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999988764
No 452
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.33 E-value=0.26 Score=54.75 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=23.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 016044 120 LGPQKGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 120 ~~~~~~vLL~GppGtGKT~la~ala~~~ 147 (396)
+++..-+.++||+||||||+++.+....
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 3455678999999999999999998855
No 453
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.33 E-value=0.048 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 454
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.32 E-value=0.046 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
...|++.|++|+|||++++++..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999987
No 455
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.32 E-value=0.081 Score=45.80 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=24.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc--CCcEEEE
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES--GAVFINV 154 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~--~~~~~~i 154 (396)
+-|.|.|+.|+||||.++.++..+ |.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 347889999999999999999977 4444443
No 456
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.32 E-value=0.081 Score=52.76 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=16.6
Q ss_pred ceEEEECCCCCcHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIA 144 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala 144 (396)
+.+++.+|+|+|||.....-+
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~ 61 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPA 61 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 579999999999998554333
No 457
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.30 E-value=0.049 Score=45.25 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
...|++.|++|+|||+|+.++...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999999863
No 458
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.30 E-value=0.11 Score=50.42 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.4
Q ss_pred ceEEEECCCCCcHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLA 140 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la 140 (396)
+.+++.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 67999999999999875
No 459
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.27 E-value=0.049 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
-.|++.|++|+|||+|+.++..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999999986
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.25 E-value=0.05 Score=45.86 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 461
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.24 E-value=0.051 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35899999999999999999863
No 462
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.24 E-value=0.15 Score=51.47 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=19.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
+.+++++|+|+|||..+-.++..
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHH
Confidence 66899999999999988777654
No 463
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.23 E-value=0.049 Score=46.01 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
...|++.|++|+|||+++.++..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45699999999999999999975
No 464
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.19 E-value=0.1 Score=46.50 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=26.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc--CCcEEEEec
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKES--GAVFINVRI 156 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~--~~~~~~i~~ 156 (396)
...+++.|.+|+||||++..++..+ |.....+++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3557889999999999999998765 555555553
No 465
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.19 E-value=0.1 Score=48.41 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.-++|.|+.|+||||+++.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 347899999999999999999753
No 466
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.061 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
...|++.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999874
No 467
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.18 E-value=0.067 Score=50.40 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKESGAV 150 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~~~~~ 150 (396)
..-+.|.||+|+||||+++.++......
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3568999999999999999999987644
No 468
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.14 E-value=0.064 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
.-.|++.|++|+|||+++.++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999864
No 469
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.13 E-value=0.22 Score=48.28 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=32.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHccccChhhhhc--CCCCCCCceEEEECCCCCcHHHH
Q 016044 82 HIDVEFESIGGLETIKQALYELVILPLRRPELFSH--GKLLGPQKGVLLYGPPGTGKTML 139 (396)
Q Consensus 82 ~~~~~~~~i~G~~~~k~~l~~~v~~~l~~~~~~~~--~~~~~~~~~vLL~GppGtGKT~l 139 (396)
.+-.+|+++.-.+.+.+.+...-. ..|.-.+. ...+...+.+++.+|+|+|||..
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~---~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGY---KIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTC---CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCcCChhhcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 345689998777777777765311 11111100 00011236799999999999984
No 470
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.11 E-value=0.053 Score=45.67 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
-.|++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 458999999999999998887643
No 471
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.07 E-value=0.054 Score=45.70 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999873
No 472
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.04 E-value=0.1 Score=53.89 Aligned_cols=19 Identities=47% Similarity=0.670 Sum_probs=16.7
Q ss_pred CceEEEECCCCCcHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAK 141 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ 141 (396)
.+++++.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4679999999999999874
No 473
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.03 E-value=0.055 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 474
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.03 E-value=0.042 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 475
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.03 E-value=0.044 Score=45.97 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 016044 125 GVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 125 ~vLL~GppGtGKT~la~ala~ 145 (396)
.|++.|++|+|||+++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999986
No 476
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.02 E-value=0.057 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..|++.|++|+|||+|+.++..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999986
No 477
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.01 E-value=0.052 Score=45.97 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+|+.++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 478
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.00 E-value=0.06 Score=47.92 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcE
Q 016044 126 VLLYGPPGTGKTMLAKAIAKESGAVF 151 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~~~~~ 151 (396)
+.|+|++|||||++++.+...+|.+.
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 67999999999999999998888664
No 479
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.99 E-value=0.057 Score=45.53 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999863
No 480
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.99 E-value=0.052 Score=52.52 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 016044 126 VLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~ 146 (396)
+.|.||+|+|||||+++++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999864
No 481
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.98 E-value=0.058 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+|+.++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 482
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.98 E-value=0.052 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
-.|++.|++|+|||+|+.++....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 459999999999999999998754
No 483
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.19 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=18.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
.+.++++||+|+|||..+-..+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHH
Confidence 36799999999999987754433
No 484
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.95 E-value=0.059 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=21.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999874
No 485
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.94 E-value=0.061 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
...|++.|++|+|||+++.++..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999975
No 486
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.93 E-value=0.061 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKES 147 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~~ 147 (396)
.-+.|.||+|+|||||+++++...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 458899999999999999998643
No 487
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.93 E-value=0.67 Score=48.43 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=23.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH---cCCcEEEEec
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE---SGAVFINVRI 156 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~---~~~~~~~i~~ 156 (396)
+.++++.||+|+|||..+-..+-. .|...+.+-+
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaP 425 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVP 425 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECS
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 467999999999999877554332 2544444443
No 488
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.93 E-value=0.059 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 489
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.92 E-value=0.41 Score=52.07 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.4
Q ss_pred ceEEEECCCCCcHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAI 143 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~al 143 (396)
+.+++.+|+|+|||..+-..
T Consensus 94 ~dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 94 KSFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp CCEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHH
Confidence 57999999999999855433
No 490
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.90 E-value=0.06 Score=45.56 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
-.|++.|++|+|||+|+.++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 491
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.89 E-value=0.066 Score=45.58 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~~ 146 (396)
...|++.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456999999999999999999763
No 492
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.88 E-value=0.055 Score=45.06 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
..|++.|++|+|||+|+.++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999985
No 493
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.85 E-value=0.06 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+++.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 494
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.83 E-value=0.12 Score=44.47 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=25.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 016044 126 VLLYGPPGTGKTMLAKAIAKES---GAVFINVRI 156 (396)
Q Consensus 126 vLL~GppGtGKT~la~ala~~~---~~~~~~i~~ 156 (396)
|.|.|+-||||||.++.++..+ |.+++...-
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 5788999999999999998865 666665543
No 495
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.80 E-value=0.07 Score=45.10 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
...|++.|++|+|||+|+.++..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 35699999999999999999987
No 496
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.79 E-value=0.042 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 016044 123 QKGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 123 ~~~vLL~GppGtGKT~la~ala~ 145 (396)
...|++.|++|+|||+++.++..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999864
No 497
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.77 E-value=0.059 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999763
No 498
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.74 E-value=0.058 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAKE 146 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~~ 146 (396)
..|++.|++|+|||+|++++...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 499
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.014 Score=55.95 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=24.8
Q ss_pred hccCCCCCccccCCCccHhHHHHHHHHHHHHH
Q 016044 350 TLNSQSSGWSRNNESNDYQVQAAISELSRLVV 381 (396)
Q Consensus 350 ~~~~~~~~w~di~~~~~~~~~~~L~ei~~~~~ 381 (396)
....|+++|+||||++ +++++|.|++.+|+
T Consensus 139 ~~~~p~v~~~dIgGl~--~~k~~l~e~v~~Pl 168 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLT--KQIKEIKEVIELPV 168 (405)
T ss_dssp EECSCSCCGGGSCSCH--HHHHHHHHHTHHHH
T ss_pred ccCCCCCCHHHhCCHH--HHHHHHHHHHHHHH
Confidence 4458999999999999 99999999855444
No 500
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.72 E-value=0.94 Score=44.78 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=18.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 016044 124 KGVLLYGPPGTGKTMLAKAIAK 145 (396)
Q Consensus 124 ~~vLL~GppGtGKT~la~ala~ 145 (396)
+.+++.+|+|+|||..+-..+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~ 44 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICE 44 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHH
Confidence 5699999999999988765544
Done!