BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016045
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/318 (41%), Positives = 183/318 (57%), Gaps = 9/318 (2%)
Query: 29 LGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTV-ENQML 87
+GV YG + NNLPPP +VV L S I + R+YD N L A NSNI++++ V + +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 88 AVLVDPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQ 147
++ +P A W+ ++ Y+P+ IAVGNE+ D L Q ++PA +I+ AL
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSD--LAQYILPAMRNIYNALSS 118
Query: 148 LGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207
GL I+VST VL SYPPSAG+F + +S +QFL+S AP +N Y YF+
Sbjct: 119 AGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFS 178
Query: 208 YKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSET 267
Y P +ISL YALF SG+V + Y N+ A VDA A+ R+G + V VSE+
Sbjct: 179 YTGNPGQISLPYALFTA-SGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSES 237
Query: 268 GWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGPT 327
GWPS G E A+ NA TYN+NL+R GTP RP +E Y+F +FNE+ K G
Sbjct: 238 GWPSAGGGAE--ASTSNAQTYNQNLIRH--VGGGTPRRPGKEIEAYIFEMFNENQKAGGI 293
Query: 328 SERNYGLFQPDGTMAYNV 345
E+N+GLF P+ Y +
Sbjct: 294 -EQNFGLFYPNKQPVYQI 310
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 177/319 (55%), Gaps = 9/319 (2%)
Query: 29 LGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLA 88
+GV YG NNLPP +V+ L IT+ RIYD N VL A SNIELI+ V N L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 89 VLVDPQQALQWVSTHIKPYFPATKITGIAVGNEV--FTDDDTSLIQNLVPATVSIHGALV 146
L +P A WV +++ ++ + + IAVGNE+ L Q ++PA +IH A+
Sbjct: 62 SLTNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIR 121
Query: 147 QLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYF 206
GL I+VST L ++ SYPPSAG+F+ +V ++ ++FLSS ++P N Y YF
Sbjct: 122 SAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPYF 181
Query: 207 AYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSE 266
Y P ISL YALF S +V + Y N+ A +DA A+ R +EV VSE
Sbjct: 182 TYAGNPRDISLPYALFTSPSVVVWDGQR-GYKNLFDATLDALYSALERASGGSLEVVVSE 240
Query: 267 TGWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGP 326
+GWPS G AT N TY NL+ Q GTP RP +E YLFA+F+E+ K P
Sbjct: 241 SGWPSAG---AFAATFDNGRTYLSNLI--QHVKRGTPKRPKRAIETYLFAMFDENKKQ-P 294
Query: 327 TSERNYGLFQPDGTMAYNV 345
E+++GLF P+ YN+
Sbjct: 295 EVEKHFGLFFPNKWQKYNL 313
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 169/318 (53%), Gaps = 9/318 (2%)
Query: 29 LGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLA 88
+GV YG++ANNLP V+ L ++ I K RIY + V A SNIE+I+ V NQ L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 89 VLVDPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLV-PATVSIHGALVQ 147
L +P A WV +I+ +FP K IAVGNEV ++ V PA +I+ AL
Sbjct: 63 ALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 148 LGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207
GL I+VST +L +YPP F+ E ++ + FL+ P N Y YF
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFG 182
Query: 208 YKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSET 267
+ D N + L YALFN Y N+ A VD+ FA +LG IE+ VSE+
Sbjct: 183 HIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSES 237
Query: 268 GWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGPT 327
GWPS+G P AT+ NA TY NL+ GTP +P +E YLFA+F+E+ K G
Sbjct: 238 GWPSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 328 SERNYGLFQPDGTMAYNV 345
SE+++GLF PD Y +
Sbjct: 295 SEKHFGLFNPDQRPKYQL 312
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 168/318 (52%), Gaps = 9/318 (2%)
Query: 29 LGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLA 88
+GV YG++ANNLP V+ L ++ I K RIY + V A SNIE+I+ V NQ L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 89 VLVDPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLV-PATVSIHGALVQ 147
L +P A WV +I+ +FP K IAVGNEV ++ V PA +I+ AL
Sbjct: 63 ALANPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALSS 122
Query: 148 LGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207
GL I+VST +L +YPP F+ E ++ + FL+ P N Y YF
Sbjct: 123 AGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYFG 182
Query: 208 YKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSET 267
+ D N + L YALFN Y N+ A VD+ FA +LG IE+ VS +
Sbjct: 183 HIDNTNAVPLSYALFNQQR-----RNDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSAS 237
Query: 268 GWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGPT 327
GWPS+G P AT+ NA TY NL+ GTP +P +E YLFA+F+E+ K G
Sbjct: 238 GWPSEGHP---AATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 328 SERNYGLFQPDGTMAYNV 345
SE+++GLF PD Y +
Sbjct: 295 SEKHFGLFNPDQRPKYQL 312
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 173/318 (54%), Gaps = 15/318 (4%)
Query: 29 LGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLA 88
+GV YG + NNLP VV L S I RIY + Q L+A NS I LI+ + N LA
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 89 -VLVDPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQ 147
+ A WV +++PY+PA I IA GNEV Q+++PA +++ AL
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEV----QGGATQSILPAMRNLNAALSA 116
Query: 148 LGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207
I+VST + S+PPSAG FK M+ + L+ST AP N Y YFA
Sbjct: 117 A-GLGAIKVSTSIRFDEVANSFPPSAGVFKNA---YMTDVARLLASTGAPLLANVYPYFA 172
Query: 208 YKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSET 267
Y+D P ISL+YA F P + + D L Y ++ A VDA A+ + G ++V VSE+
Sbjct: 173 YRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSES 232
Query: 268 GWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGPT 327
GWPS G A+ NA TYN+ L+ GTP + LE Y+FA+FNE+ K G
Sbjct: 233 GWPSAGG---FAASAGNARTYNQGLINH--VGGGTP-KKREALETYIFAMFNENQKTGDA 286
Query: 328 SERNYGLFQPDGTMAYNV 345
+ER++GLF PD + AYN+
Sbjct: 287 TERSFGLFNPDKSPAYNI 304
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 164/311 (52%), Gaps = 15/311 (4%)
Query: 29 LGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLA 88
+GV YG ANNLP VV + S I R+Y N L A + I ++V N +L+
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 89 VLVDPQQALQ-WVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQ 147
L A WV ++I+ Y P + VGNEV +NLVPA ++HGALV
Sbjct: 61 NLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEV----AGGATRNLVPAMKNVHGALVA 115
Query: 148 LGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207
GL +I+V+T S A+L PPSAGSF E A M +QFL+ T AP N Y Y A
Sbjct: 116 AGLG-HIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLA 174
Query: 208 YKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSET 267
+ P+ + + YALFN SG V Y N+ VDA AM + G + +++ VSE+
Sbjct: 175 WAYNPSAMDMGYALFNA-SGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSES 233
Query: 268 GWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGPT 327
GWPS G AT NA YN++L+ GTP P +E Y+FA+FNE+ K
Sbjct: 234 GWPSGGG---TAATPANARFYNQHLINH--VGRGTPRHPGA-IETYIFAMFNENQKDSGV 287
Query: 328 SERNYGLFQPD 338
E+N+GLF P+
Sbjct: 288 -EQNWGLFYPN 297
>pdb|2IX0|A Chain A, Rnase Ii
Length = 663
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 163 AVLEESYPPSAG--SFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRIS---L 217
AV E P G SF E ++QY+ F P+W+ + K+AP+ ++ L
Sbjct: 147 AVAEMRRHPLKGDRSFYAE----LTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML 202
Query: 218 DYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVS---ETGWPSKGD 274
D L + +D T D+ +D A+FA A L + +++ V+ T W ++G
Sbjct: 203 DEGLVREDLTALDFVT---IDSASTEDMDDALFAKA-LPDDKLQLIVAIADPTAWIAEGS 258
Query: 275 PNEVGATVVNAATY----NKNLLRRQMANEGTPLRPN 307
+ A + Y N +L R+++++ LR N
Sbjct: 259 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN 295
>pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii
pdb|2ID0|B Chain B, Escherichia Coli Rnase Ii
pdb|2ID0|C Chain C, Escherichia Coli Rnase Ii
pdb|2ID0|D Chain D, Escherichia Coli Rnase Ii
Length = 644
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 163 AVLEESYPPSAG--SFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRIS---L 217
AV E P G SF E ++QY+ F P+W+ + K+AP+ ++ L
Sbjct: 128 AVAEXRRHPLKGDRSFYAE----LTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEXL 183
Query: 218 DYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVS---ETGWPSKGD 274
D L + +D T D+ D A+FA A L + +++ V+ T W ++G
Sbjct: 184 DEGLVREDLTALDFVT---IDSASTEDXDDALFAKA-LPDDKLQLIVAIADPTAWIAEGS 239
Query: 275 PNEVGATVVNAATY----NKNLLRRQMANEGTPLRPN 307
+ A + Y N L R+++++ LR N
Sbjct: 240 KLDKAAKIRAFTNYLPGFNIPXLPRELSDDLCSLRAN 276
>pdb|2IX1|A Chain A, Rnase Ii D209n Mutant
Length = 664
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 163 AVLEESYPPSAG--SFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRIS---L 217
AV E P G SF E ++QY+ F P+W+ + K+AP+ ++ L
Sbjct: 148 AVAEMRRHPLKGDRSFYAE----LTQYITFGDDHFVPWWVTLARHNLEKEAPDGVATEML 203
Query: 218 DYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVS---ETGWPSKGD 274
D L + +D T D+ ++ A+FA A L + +++ V+ T W ++G
Sbjct: 204 DEGLVREDLTALDFVT---IDSASTEDMNDALFAKA-LPDDKLQLIVAIADPTAWIAEGS 259
Query: 275 PNEVGATVVNAATY----NKNLLRRQMANEGTPLRPN 307
+ A + Y N +L R+++++ LR N
Sbjct: 260 KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN 296
>pdb|3GI1|A Chain A, Crystal Structure Of The Laminin-Binding Protein Lbp Of
Streptococcus Pyogenes
pdb|3GI1|B Chain B, Crystal Structure Of The Laminin-Binding Protein Lbp Of
Streptococcus Pyogenes
Length = 286
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 166 EESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAY 208
++SY +A +FK E + +Y Q ++ ++ +T F+Y
Sbjct: 149 KDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSY 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,549,333
Number of Sequences: 62578
Number of extensions: 412093
Number of successful extensions: 826
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 18
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)