Query 016045
Match_columns 396
No_of_seqs 203 out of 1299
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 3.8E-89 8.2E-94 674.2 20.8 309 29-347 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3.3E-46 7.1E-51 353.1 23.2 253 25-339 42-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.0 2.1E-08 4.6E-13 100.5 18.9 247 43-343 26-327 (332)
4 COG3867 Arabinogalactan endo-1 98.7 4.2E-07 9E-12 88.9 15.0 256 43-347 65-390 (403)
5 PF03198 Glyco_hydro_72: Gluca 98.5 1E-06 2.2E-11 87.1 11.5 127 29-159 30-182 (314)
6 PRK10150 beta-D-glucuronidase; 98.2 0.00025 5.4E-09 76.6 22.7 238 46-345 318-585 (604)
7 PF00150 Cellulase: Cellulase 98.0 0.00083 1.8E-08 64.1 19.9 130 27-158 9-172 (281)
8 smart00633 Glyco_10 Glycosyl h 97.5 0.013 2.7E-07 56.6 19.7 79 248-344 171-250 (254)
9 PF02836 Glyco_hydro_2_C: Glyc 97.0 0.033 7.2E-07 54.7 16.1 94 29-122 18-132 (298)
10 PF11790 Glyco_hydro_cc: Glyco 96.7 0.041 8.8E-07 52.8 13.9 67 260-341 166-232 (239)
11 TIGR03356 BGL beta-galactosida 95.5 1.6 3.5E-05 45.6 19.3 41 44-84 57-116 (427)
12 cd02875 GH18_chitobiase Chitob 91.6 3.2 7E-05 42.3 12.9 135 53-206 54-190 (358)
13 PF00232 Glyco_hydro_1: Glycos 89.7 0.36 7.8E-06 50.7 4.2 113 44-161 61-222 (455)
14 PRK10340 ebgA cryptic beta-D-g 88.3 22 0.00048 41.4 17.6 96 29-124 337-452 (1021)
15 PRK09936 hypothetical protein; 86.3 38 0.00083 33.9 18.2 57 29-85 22-95 (296)
16 PF13721 SecD-TM1: SecD export 76.2 20 0.00042 30.1 8.3 81 9-105 14-94 (101)
17 cd02874 GH18_CFLE_spore_hydrol 73.5 15 0.00034 36.1 8.2 82 65-150 48-138 (313)
18 PF02449 Glyco_hydro_42: Beta- 70.0 9.4 0.0002 38.8 5.9 81 44-124 13-140 (374)
19 COG4782 Uncharacterized protei 68.6 18 0.00039 37.2 7.4 59 237-298 125-186 (377)
20 PRK13511 6-phospho-beta-galact 65.5 14 0.0003 39.1 6.3 46 43-88 56-120 (469)
21 cd00598 GH18_chitinase-like Th 65.5 17 0.00037 33.1 6.2 80 67-150 54-142 (210)
22 cd06545 GH18_3CO4_chitinase Th 65.5 65 0.0014 30.8 10.4 80 66-150 50-133 (253)
23 smart00481 POLIIIAc DNA polyme 63.7 23 0.00051 26.5 5.6 44 41-84 15-63 (67)
24 PLN02998 beta-glucosidase 57.6 18 0.0004 38.6 5.5 75 257-340 390-466 (497)
25 PF05990 DUF900: Alpha/beta hy 55.4 56 0.0012 31.1 7.9 43 253-298 43-88 (233)
26 PLN02814 beta-glucosidase 55.3 31 0.00068 37.0 6.8 45 44-88 80-143 (504)
27 PF00925 GTP_cyclohydro2: GTP 55.2 15 0.00032 33.5 3.7 37 46-82 131-167 (169)
28 KOG0626 Beta-glucosidase, lact 54.7 74 0.0016 34.3 9.3 75 256-338 404-486 (524)
29 cd02872 GH18_chitolectin_chito 54.6 65 0.0014 32.4 8.7 58 131-207 133-192 (362)
30 PLN02849 beta-glucosidase 53.2 26 0.00057 37.5 5.8 45 44-88 82-145 (503)
31 PF04909 Amidohydro_2: Amidohy 53.0 34 0.00074 31.9 6.0 89 136-270 85-175 (273)
32 TIGR00505 ribA GTP cyclohydrol 51.5 22 0.00049 33.0 4.4 33 47-79 131-163 (191)
33 PRK00393 ribA GTP cyclohydrola 50.1 24 0.00052 33.0 4.4 33 47-79 134-166 (197)
34 PF00331 Glyco_hydro_10: Glyco 48.5 26 0.00057 35.0 4.7 219 66-343 63-311 (320)
35 PRK09525 lacZ beta-D-galactosi 47.3 93 0.002 36.4 9.4 95 29-123 353-464 (1027)
36 PLN00196 alpha-amylase; Provis 44.6 74 0.0016 33.4 7.4 55 29-83 29-113 (428)
37 cd04734 OYE_like_3_FMN Old yel 44.2 3.5E+02 0.0076 27.3 15.3 130 167-301 62-206 (343)
38 PF03662 Glyco_hydro_79n: Glyc 43.7 49 0.0011 33.5 5.7 81 67-147 114-202 (319)
39 cd02873 GH18_IDGF The IDGF's ( 41.3 1.3E+02 0.0029 31.1 8.7 57 131-207 168-224 (413)
40 PRK12485 bifunctional 3,4-dihy 41.0 31 0.00067 35.6 3.9 33 46-79 330-362 (369)
41 cd00641 GTP_cyclohydro2 GTP cy 40.9 40 0.00086 31.3 4.3 33 47-79 133-165 (193)
42 cd02876 GH18_SI-CLP Stabilin-1 39.9 1.5E+02 0.0032 29.4 8.5 62 131-207 129-191 (318)
43 PF01229 Glyco_hydro_39: Glyco 39.1 4.9E+02 0.011 27.5 13.6 252 45-342 44-350 (486)
44 PRK14019 bifunctional 3,4-dihy 37.6 38 0.00082 34.9 3.9 34 47-81 328-361 (367)
45 PRK09589 celA 6-phospho-beta-g 37.1 80 0.0017 33.6 6.4 46 43-88 69-134 (476)
46 TIGR01233 lacG 6-phospho-beta- 36.9 68 0.0015 34.0 5.8 46 43-88 55-119 (467)
47 cd04743 NPD_PKS 2-Nitropropane 36.4 2.7E+02 0.0059 28.2 9.7 79 27-122 56-134 (320)
48 COG4213 XylF ABC-type xylose t 35.4 67 0.0014 32.6 5.0 77 65-160 175-251 (341)
49 PRK10629 EnvZ/OmpR regulon mod 34.8 2.4E+02 0.0052 24.6 8.0 46 15-60 24-69 (127)
50 TIGR01579 MiaB-like-C MiaB-lik 34.3 4.9E+02 0.011 26.7 11.6 60 131-209 272-331 (414)
51 cd02932 OYE_YqiM_FMN Old yello 34.1 4.9E+02 0.011 26.0 14.9 131 168-301 63-219 (336)
52 COG3934 Endo-beta-mannanase [C 34.0 77 0.0017 34.0 5.5 186 97-345 123-312 (587)
53 COG2159 Predicted metal-depend 32.9 2.8E+02 0.0061 27.4 9.1 94 137-274 114-209 (293)
54 PRK08815 GTP cyclohydrolase; P 31.9 61 0.0013 33.5 4.3 37 47-83 305-341 (375)
55 PRK09318 bifunctional 3,4-dihy 31.9 62 0.0013 33.7 4.4 37 47-83 320-356 (387)
56 PF02449 Glyco_hydro_42: Beta- 31.6 3.9E+02 0.0085 27.0 10.2 55 131-205 208-262 (374)
57 PRK06552 keto-hydroxyglutarate 31.5 4.5E+02 0.0098 24.8 10.7 88 42-146 118-210 (213)
58 PRK09852 cryptic 6-phospho-bet 31.5 1.2E+02 0.0025 32.4 6.4 45 44-88 74-138 (474)
59 TIGR03632 bact_S11 30S ribosom 31.4 1E+02 0.0022 26.0 5.0 35 45-79 51-90 (108)
60 smart00636 Glyco_18 Glycosyl h 31.3 1E+02 0.0022 30.5 5.7 79 68-148 57-142 (334)
61 PRK09311 bifunctional 3,4-dihy 31.2 64 0.0014 33.7 4.4 38 46-83 338-375 (402)
62 PRK09314 bifunctional 3,4-dihy 31.2 60 0.0013 33.1 4.1 35 45-79 299-334 (339)
63 PF00834 Ribul_P_3_epim: Ribul 30.8 3.4E+02 0.0074 25.4 8.8 100 42-157 68-172 (201)
64 PRK09593 arb 6-phospho-beta-gl 30.7 1.4E+02 0.003 31.8 6.9 46 43-88 75-140 (478)
65 PRK09319 bifunctional 3,4-dihy 30.1 67 0.0015 34.9 4.4 38 46-83 342-379 (555)
66 PRK09989 hypothetical protein; 29.9 4.8E+02 0.01 24.6 13.2 163 30-209 5-184 (258)
67 PRK15014 6-phospho-beta-glucos 29.9 99 0.0021 32.9 5.6 45 43-87 71-135 (477)
68 PLN02831 Bifunctional GTP cycl 29.9 67 0.0015 34.1 4.3 37 47-83 373-409 (450)
69 PF01055 Glyco_hydro_31: Glyco 27.7 2.6E+02 0.0057 28.8 8.3 131 131-317 42-178 (441)
70 PF14871 GHL6: Hypothetical gl 27.4 1.3E+02 0.0028 26.3 5.1 42 43-84 2-66 (132)
71 PF14606 Lipase_GDSL_3: GDSL-l 27.3 4E+02 0.0088 24.6 8.5 52 245-298 80-133 (178)
72 COG1433 Uncharacterized conser 27.0 1.2E+02 0.0027 26.3 4.8 39 45-83 56-94 (121)
73 cd02803 OYE_like_FMN_family Ol 26.4 6.2E+02 0.014 24.8 13.4 131 166-301 61-206 (327)
74 cd06418 GH25_BacA-like BacA is 24.8 5.9E+02 0.013 24.0 11.8 106 41-151 21-143 (212)
75 PF06180 CbiK: Cobalt chelatas 24.7 6.7E+02 0.014 24.6 10.1 138 39-207 56-207 (262)
76 TIGR03628 arch_S11P archaeal r 24.3 1.6E+02 0.0034 25.4 4.9 36 44-79 53-101 (114)
77 PF00411 Ribosomal_S11: Riboso 23.6 1.5E+02 0.0032 25.1 4.5 36 45-80 51-91 (110)
78 PLN03059 beta-galactosidase; P 23.5 9.1E+02 0.02 27.9 11.8 114 45-161 63-223 (840)
79 TIGR02690 resist_ArsH arsenica 23.4 3.9E+02 0.0085 25.5 7.9 75 95-193 44-118 (219)
80 cd06542 GH18_EndoS-like Endo-b 23.4 2.9E+02 0.0064 26.1 7.2 78 66-147 55-143 (255)
81 PRK07198 hypothetical protein; 23.1 67 0.0015 33.5 2.8 37 47-83 338-375 (418)
82 TIGR03581 EF_0839 conserved hy 23.1 1.5E+02 0.0032 28.6 4.8 56 22-77 112-179 (236)
83 PRK09997 hydroxypyruvate isome 22.5 6.6E+02 0.014 23.7 12.7 49 31-80 6-58 (258)
84 PF02811 PHP: PHP domain; Int 22.1 1.6E+02 0.0035 25.4 4.8 44 41-84 16-64 (175)
85 PF00150 Cellulase: Cellulase 21.7 6.5E+02 0.014 23.3 9.3 68 244-324 63-134 (281)
86 cd01543 PBP1_XylR Ligand-bindi 21.5 4.7E+02 0.01 24.1 8.1 127 44-191 98-238 (265)
87 CHL00041 rps11 ribosomal prote 21.4 2E+02 0.0044 24.6 5.0 35 45-79 64-103 (116)
88 PF06117 DUF957: Enterobacteri 21.4 1.7E+02 0.0037 22.7 4.0 40 96-147 13-54 (65)
89 PRK09607 rps11p 30S ribosomal 21.3 1.9E+02 0.0042 25.5 4.9 36 44-79 60-108 (132)
90 KOG0078 GTP-binding protein SE 20.8 2.1E+02 0.0046 27.2 5.4 82 25-122 41-127 (207)
91 PRK14328 (dimethylallyl)adenos 20.3 9.3E+02 0.02 25.0 10.7 58 131-207 281-338 (439)
92 KOG2775 Metallopeptidase [Gene 20.1 1E+02 0.0023 31.1 3.3 104 132-268 113-220 (397)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=3.8e-89 Score=674.25 Aligned_cols=309 Identities=53% Similarity=0.910 Sum_probs=256.0
Q ss_pred ceEEecCCCCCCCCHHHHHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEeccccccccC-CHHHHHHHHHhccccc
Q 016045 29 LGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLAVLV-DPQQALQWVSTHIKPY 107 (396)
Q Consensus 29 ~GInYg~~~~nlps~~~v~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV~n~~~~~la-~~~~A~~Wv~~~v~~~ 107 (396)
+|||||+.++|+|+|.+|+++||+++|++||||++|+++|+|++++||+|++||+|+++++++ ++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred CCCceEEEEEeccccccCCCchhHhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhHHHHHHH
Q 016045 108 FPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQY 187 (396)
Q Consensus 108 ~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l~~~ 187 (396)
+|.++|++|+||||++..... ..|+|+|+++|++|++.||+++|||+|+++++++..+||||+|.|++++.++|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~---~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN---AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG---GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccc---eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHH
Confidence 999999999999999987532 28999999999999999999899999999999999999999999999998999999
Q ss_pred HHHhhhcCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeee
Q 016045 188 LQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSET 267 (396)
Q Consensus 188 ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~vd~~~~~~Y~nlfda~vDav~~Am~k~g~~~~~vvVtET 267 (396)
++||.+++||||+|+||||++..+|.+++|+||+|+++.+.+|+ +++|+||||+|+|++++||+|+|+++++|+||||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998888764 8899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCCCCCCCCceeeecCCCceeEeeee
Q 016045 268 GWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGPTSERNYGLFQPDGTMAYNVGL 347 (396)
Q Consensus 268 GWPS~G~~~~~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~yiF~~FDE~wK~g~~~E~~wGlf~~d~~~ky~l~~ 347 (396)
||||+|+ .+|+++||+.|++|+++++. .|||+||+..+++||||||||+||+|+++|||||||++||++||+|+|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999999 67999999999999999997 799999999999999999999999987899999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-46 Score=353.09 Aligned_cols=253 Identities=23% Similarity=0.311 Sum_probs=203.3
Q ss_pred ccccceEEecCCCCC--CCCHHHHHHHHhc-CCC-CEEEEccCC----hHHHHHHhcCCCeEEEEeccccccccCCHHHH
Q 016045 25 GVTCLGVNYGQVANN--LPPPDKVVDLLSS-LKI-TKSRIYDTN----PQVLTAFANSNIELIVTVENQMLAVLVDPQQA 96 (396)
Q Consensus 25 ~~~~~GInYg~~~~n--lps~~~v~~llks-~~i-~~VRiY~~d----~~vL~A~~~tgi~v~lGV~n~~~~~la~~~~A 96 (396)
+.+..|||||++.++ ||+.+|+..+|.. ..+ ..||+|.+| ++|++|+...|++|.||||..+.-.- +.+
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~-~~~-- 118 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHD-AVE-- 118 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhh-hHH--
Confidence 445689999999886 7899999766543 233 399999887 46999999999999999997542221 222
Q ss_pred HHHHHhcccccCCCceEEEEEeccccccCCCchhHhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCcc
Q 016045 97 LQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSF 176 (396)
Q Consensus 97 ~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F 176 (396)
.-+...+.+++.+..|++|+||||+|+|++. .+++|+.+|..+|++|+.+|+++ ||+|+++|.++.+
T Consensus 119 -~til~ay~~~~~~d~v~~v~VGnEal~r~~~-tasql~~~I~~vrsav~~agy~g--pV~T~dsw~~~~~--------- 185 (305)
T COG5309 119 -KTILSAYLPYNGWDDVTTVTVGNEALNRNDL-TASQLIEYIDDVRSAVKEAGYDG--PVTTVDSWNVVIN--------- 185 (305)
T ss_pred -HHHHHHHhccCCCCceEEEEechhhhhcCCC-CHHHHHHHHHHHHHHHHhcCCCC--ceeecccceeeeC---------
Confidence 1245568888888899999999999999876 48999999999999999999965 8999999999976
Q ss_pred chhhHHHHHHHHHHhhhcCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcC
Q 016045 177 KTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLG 256 (396)
Q Consensus 177 ~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~vd~~~~~~Y~nlfda~vDav~~Am~k~g 256 (396)
+ +.|++..|| +|+|.||||+.+...+. . + .++-.|+.-++.+ +
T Consensus 186 n----p~l~~~SDf-------ia~N~~aYwd~~~~a~~--------------~-------~-~f~~~q~e~vqsa----~ 228 (305)
T COG5309 186 N----PELCQASDF-------IAANAHAYWDGQTVANA--------------A-------G-TFLLEQLERVQSA----C 228 (305)
T ss_pred C----hHHhhhhhh-------hhcccchhccccchhhh--------------h-------h-HHHHHHHHHHHHh----c
Confidence 2 357888999 99999999998753220 0 1 2233455555544 3
Q ss_pred CCCceEEEeeecCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCC-CC-CCCCcee
Q 016045 257 YNGIEVRVSETGWPSKGDPNE-VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKP-GP-TSERNYG 333 (396)
Q Consensus 257 ~~~~~vvVtETGWPS~G~~~~-~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~yiF~~FDE~wK~-g~-~~E~~wG 333 (396)
..+|+++|+||||||.|..++ +.||++||++|+++++|.+++ ..+++|+||+|||+||. |. ++|+|||
T Consensus 229 g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~---------~G~d~fvfeAFdd~WK~~~~y~VEkywG 299 (305)
T COG5309 229 GTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS---------CGYDVFVFEAFDDDWKADGSYGVEKYWG 299 (305)
T ss_pred CCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc---------cCccEEEeeeccccccCccccchhhcee
Confidence 345999999999999999887 789999999999999999974 46899999999999995 44 7999999
Q ss_pred eecCCC
Q 016045 334 LFQPDG 339 (396)
Q Consensus 334 lf~~d~ 339 (396)
+++.|+
T Consensus 300 v~~s~~ 305 (305)
T COG5309 300 VLSSDR 305 (305)
T ss_pred eeccCC
Confidence 999875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.01 E-value=2.1e-08 Score=100.47 Aligned_cols=247 Identities=15% Similarity=0.194 Sum_probs=121.2
Q ss_pred HHHHHHHHhcCCCCEEEE--c-cC------C-hH---HHHHHhcCCCeEEEEecccc---------c-cccC--CHH---
Q 016045 43 PDKVVDLLSSLKITKSRI--Y-DT------N-PQ---VLTAFANSNIELIVTVENQM---------L-AVLV--DPQ--- 94 (396)
Q Consensus 43 ~~~v~~llks~~i~~VRi--Y-~~------d-~~---vL~A~~~tgi~v~lGV~n~~---------~-~~la--~~~--- 94 (396)
..++.++||.+|++.||+ | ++ | .. ..+.+++.|++|+|-.--+| + .+.. +.+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 467899999999986655 4 21 2 22 44566779999999887432 1 1111 111
Q ss_pred -HHHHHHHhcccccC-CCceEEEEEeccccccC-----CCchhHhhHHHHHHHHHHHHHhcCCCCceEEecccccccccc
Q 016045 95 -QALQWVSTHIKPYF-PATKITGIAVGNEVFTD-----DDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEE 167 (396)
Q Consensus 95 -~A~~Wv~~~v~~~~-p~~~I~~I~VGNEvl~~-----~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~ 167 (396)
+..++.++-+...- -++.++.|-||||+-.+ +...-.+.+...++.-.+++|+..-+-+|-|-.+...+.
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~--- 182 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDN--- 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSH---
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCch---
Confidence 11222222222211 24668899999998543 122235677888888888888755433333332221111
Q ss_pred cCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHH
Q 016045 168 SYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDA 247 (396)
Q Consensus 168 sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~vd~~~~~~Y~nlfda~vDa 247 (396)
..++-=.......-+|| +.++++.||||... + +.+...++.
T Consensus 183 ------~~~~~~f~~l~~~g~d~-----DviGlSyYP~w~~~-----l-----------------------~~l~~~l~~ 223 (332)
T PF07745_consen 183 ------DLYRWFFDNLKAAGVDF-----DVIGLSYYPFWHGT-----L-----------------------EDLKNNLND 223 (332)
T ss_dssp ------HHHHHHHHHHHHTTGG------SEEEEEE-STTST------H-----------------------HHHHHHHHH
T ss_pred ------HHHHHHHHHHHhcCCCc-----ceEEEecCCCCcch-----H-----------------------HHHHHHHHH
Confidence 00100001111222444 55999999999762 1 112223332
Q ss_pred HHHHHHHcCCCCceEEEeeecCCCCCCC-----CC---------CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEE
Q 016045 248 AIFAMARLGYNGIEVRVSETGWPSKGDP-----NE---------VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVY 313 (396)
Q Consensus 248 v~~Am~k~g~~~~~vvVtETGWPS~G~~-----~~---------~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~y 313 (396)
+ .++ | +|+|+|.|||||..-+. +. -.+|++.|+.|++++++.+.+-.+ +..+-+|
T Consensus 224 l---~~r--y-~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~Gvf 292 (332)
T PF07745_consen 224 L---ASR--Y-GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGLGVF 292 (332)
T ss_dssp H---HHH--H-T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEEE
T ss_pred H---HHH--h-CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeEEEE
Confidence 2 223 3 68999999999998221 11 136999999999999999985211 1234455
Q ss_pred EEE-eecCCC-----CCCCCCCCceeeecCCCceeE
Q 016045 314 LFA-LFNEDM-----KPGPTSERNYGLFQPDGTMAY 343 (396)
Q Consensus 314 iF~-~FDE~w-----K~g~~~E~~wGlf~~d~~~ky 343 (396)
+-| ..-..+ ..|...|.. +||+.+|++--
T Consensus 293 YWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~ 327 (332)
T PF07745_consen 293 YWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALP 327 (332)
T ss_dssp EE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-G
T ss_pred eeccccccCCcccccCCCCCcccc-ccCCCCCCCch
Confidence 544 222222 234344444 89998887643
No 4
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=4.2e-07 Score=88.87 Aligned_cols=256 Identities=15% Similarity=0.213 Sum_probs=140.2
Q ss_pred HHHHHHHHhcCCCCEEEE--c----cCC-----------h---HHHHHHhcCCCeEEEEecccccccc-CCHHHHHHHHH
Q 016045 43 PDKVVDLLSSLKITKSRI--Y----DTN-----------P---QVLTAFANSNIELIVTVENQMLAVL-VDPQQALQWVS 101 (396)
Q Consensus 43 ~~~v~~llks~~i~~VRi--Y----~~d-----------~---~vL~A~~~tgi~v~lGV~n~~~~~l-a~~~~A~~Wv~ 101 (396)
++++.+.||.+|++.||+ | |.| . ++-+.+++.||||++-.--+|.-+- +-+..-.+|..
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 467789999999986665 4 443 1 2445566799999998765432110 01111223422
Q ss_pred hc-------cccc--------C-CCceEEEEEeccccccC-----CCchhHhhHHHHHHHHHHHHHhcCCCCceEEeccc
Q 016045 102 TH-------IKPY--------F-PATKITGIAVGNEVFTD-----DDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPN 160 (396)
Q Consensus 102 ~~-------v~~~--------~-p~~~I~~I~VGNEvl~~-----~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~ 160 (396)
-+ |-.| . -+..+.-|-||||.-.+ ++..-...+...++.--++++... ..|||---
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lH- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALH- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEE-
Confidence 21 1111 1 23457789999998532 222123445555555555665533 24555432
Q ss_pred ccccccccCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchH
Q 016045 161 SLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNM 240 (396)
Q Consensus 161 s~~vl~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~vd~~~~~~Y~nl 240 (396)
+.+ |--.+.|+-=...+-+.-+|| +.|..--||||.+.-+ ||
T Consensus 222 ----la~--g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~---------------------------nL 263 (403)
T COG3867 222 ----LAE--GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN---------------------------NL 263 (403)
T ss_pred ----ecC--CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH---------------------------HH
Confidence 222 222344442222334556666 4589999999987521 11
Q ss_pred HHHHHHHHHHHHHHcCCCCceEEEeeecC--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC-----
Q 016045 241 LYAQVDAAIFAMARLGYNGIEVRVSETGW--------------PSKGDPNEVGATVVNAATYNKNLLRRQMANEG----- 301 (396)
Q Consensus 241 fda~vDav~~Am~k~g~~~~~vvVtETGW--------------PS~G~~~~~~AS~~Na~~y~~~li~~~~~~~G----- 301 (396)
...++.+-. -| +|.|+|.||+. |+.+-..+-..+++-|++|.+++|+.+..-.+
T Consensus 264 -~~nl~dia~-----rY-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlG 336 (403)
T COG3867 264 -TTNLNDIAS-----RY-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLG 336 (403)
T ss_pred -HhHHHHHHH-----Hh-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceE
Confidence 111222211 12 68999999998 55553323347889999999999999874211
Q ss_pred --------CCCCCCCcccEEEEEee-cCCCCCCCCCCCceeeecCCCceeEeeee
Q 016045 302 --------TPLRPNMRLEVYLFALF-NEDMKPGPTSERNYGLFQPDGTMAYNVGL 347 (396)
Q Consensus 302 --------Tp~rp~~~i~~yiF~~F-DE~wK~g~~~E~~wGlf~~d~~~ky~l~~ 347 (396)
-|-+++....+-+=+.| +|+|+.|..++.. -||+-+|.|--.|+.
T Consensus 337 vFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~v 390 (403)
T COG3867 337 VFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLNV 390 (403)
T ss_pred EEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchhh
Confidence 22222222222111222 3677766544443 688888887777764
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.49 E-value=1e-06 Score=87.13 Aligned_cols=127 Identities=26% Similarity=0.445 Sum_probs=72.6
Q ss_pred ceEEecCCCC-------C-CCCHH---HHHHHHhcCCCCEEEEccCCh-----HHHHHHhcCCCeEEEEeccccccccC-
Q 016045 29 LGVNYGQVAN-------N-LPPPD---KVVDLLSSLKITKSRIYDTNP-----QVLTAFANSNIELIVTVENQMLAVLV- 91 (396)
Q Consensus 29 ~GInYg~~~~-------n-lps~~---~v~~llks~~i~~VRiY~~d~-----~vL~A~~~tgi~v~lGV~n~~~~~la- 91 (396)
.||.|-+-++ | |-.++ ..+.+||.+|++.||+|..|+ .-+.+|++.||-|++.+... -.++.
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 6999988765 1 22232 235688999999999998884 47899999999999999864 22332
Q ss_pred -CHHHHHHH-------HHhcccccCCCceEEEEEeccccccCC-CchhHhhHHHHHHHHHHHHHhcCCCCceEEecc
Q 016045 92 -DPQQALQW-------VSTHIKPYFPATKITGIAVGNEVFTDD-DTSLIQNLVPATVSIHGALVQLGLDKYIQVSTP 159 (396)
Q Consensus 92 -~~~~A~~W-------v~~~v~~~~p~~~I~~I~VGNEvl~~~-~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~ 159 (396)
++ +..| ...-|..+..=.++-+..+|||++... ....++.+-.+++.+|+-+++.++. +|||+-+
T Consensus 109 ~~P--~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYs 182 (314)
T PF03198_consen 109 SDP--APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYS 182 (314)
T ss_dssp TS--------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEE
T ss_pred CCC--cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEE
Confidence 22 1122 111133332225789999999999763 3345678888899999999999985 5999865
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.20 E-value=0.00025 Score=76.60 Aligned_cols=238 Identities=12% Similarity=0.072 Sum_probs=133.1
Q ss_pred HHHHHhcCCCCEEEEc--cCChHHHHHHhcCCCeEEEEecccc---------------ccccC----CH---HHHHHHHH
Q 016045 46 VVDLLSSLKITKSRIY--DTNPQVLTAFANSNIELIVTVENQM---------------LAVLV----DP---QQALQWVS 101 (396)
Q Consensus 46 v~~llks~~i~~VRiY--~~d~~vL~A~~~tgi~v~lGV~n~~---------------~~~la----~~---~~A~~Wv~ 101 (396)
.++++|..|++.||+- -.++..+.++...||-|+.=++... ..... ++ +...+-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 3567899999999994 3357899999999998875443210 00010 11 11222244
Q ss_pred hcccccCCCceEEEEEeccccccCCCchhHhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhH
Q 016045 102 THIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVA 181 (396)
Q Consensus 102 ~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~ 181 (396)
+.|..+...-.|..-.+|||.-... ...-..++.+.+.+++..-++ +|+.+..+. .+|..
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~DptR--~vt~~~~~~-----~~~~~-------- 457 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLDPTR--PVTCVNVMF-----ATPDT-------- 457 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhCCCC--ceEEEeccc-----CCccc--------
Confidence 4566654223588999999964321 122344455555555544322 455543210 01110
Q ss_pred HHHHHHHHHhhhcCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCce
Q 016045 182 GIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIE 261 (396)
Q Consensus 182 ~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~vd~~~~~~Y~nlfda~vDav~~Am~k~g~~~~~ 261 (396)
..+.+++|+ ++.|.|+=|-.. .... .. ....++..++. ..+ .+ +||
T Consensus 458 ~~~~~~~Dv-------~~~N~Y~~wy~~--~~~~----~~---------------~~~~~~~~~~~----~~~-~~-~kP 503 (604)
T PRK10150 458 DTVSDLVDV-------LCLNRYYGWYVD--SGDL----ET---------------AEKVLEKELLA----WQE-KL-HKP 503 (604)
T ss_pred ccccCcccE-------EEEcccceecCC--CCCH----HH---------------HHHHHHHHHHH----HHH-hc-CCC
Confidence 112356788 888987533211 1000 00 00112222221 111 13 899
Q ss_pred EEEeeecCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCCCC--CCCCceeee
Q 016045 262 VRVSETGWPSKGD----PNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGP--TSERNYGLF 335 (396)
Q Consensus 262 vvVtETGWPS~G~----~~~~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~yiF~~FDE~wK~g~--~~E~~wGlf 335 (396)
++++|.|+.+.-+ .+ ..-|.+.|..|++...+.+.+ +|. -+-.|+..+||-....|. .-..+.||+
T Consensus 504 ~~isEyg~~~~~~~h~~~~-~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~ 575 (604)
T PRK10150 504 IIITEYGADTLAGLHSMYD-DMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKGIF 575 (604)
T ss_pred EEEEccCCccccccccCCC-CCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcceeE
Confidence 9999999866321 11 234789999998877776653 332 566899999996555331 123478999
Q ss_pred cCCCceeEee
Q 016045 336 QPDGTMAYNV 345 (396)
Q Consensus 336 ~~d~~~ky~l 345 (396)
+.||+||-..
T Consensus 576 ~~dr~~k~~~ 585 (604)
T PRK10150 576 TRDRQPKSAA 585 (604)
T ss_pred cCCCCChHHH
Confidence 9999999754
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.02 E-value=0.00083 Score=64.06 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=82.9
Q ss_pred ccceEEecCCCCCCCCHHHHHHHHhcCCCCEEEEccC-------------C-------hHHHHHHhcCCCeEEEEeccc-
Q 016045 27 TCLGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDT-------------N-------PQVLTAFANSNIELIVTVENQ- 85 (396)
Q Consensus 27 ~~~GInYg~~~~nlps~~~v~~llks~~i~~VRiY~~-------------d-------~~vL~A~~~tgi~v~lGV~n~- 85 (396)
...|+|-. ..++. ..++..+.+++.|++.|||.-. + ..+|+++++.||+|+|.+...
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 34566665 22222 6788899999999999999711 1 148888999999999998864
Q ss_pred ----cccccCCHHHHHHHHHh---cccccC-CCceEEEEEeccccccCCCc-----hhHhhHHHHHHHHHHHHHhcCCCC
Q 016045 86 ----MLAVLVDPQQALQWVST---HIKPYF-PATKITGIAVGNEVFTDDDT-----SLIQNLVPATVSIHGALVQLGLDK 152 (396)
Q Consensus 86 ----~~~~la~~~~A~~Wv~~---~v~~~~-p~~~I~~I~VGNEvl~~~~~-----~~~~~Ll~am~~v~~aL~~~gl~~ 152 (396)
.-..........+|+++ .+...| ....|.++=+.||....... .....+.+.++.+.+++++.+-+.
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 11111133333344333 232322 33457799999999875322 123678889999999999998765
Q ss_pred ceEEec
Q 016045 153 YIQVST 158 (396)
Q Consensus 153 ~IkVsT 158 (396)
.|-|+.
T Consensus 167 ~i~~~~ 172 (281)
T PF00150_consen 167 LIIVGG 172 (281)
T ss_dssp EEEEEE
T ss_pred eeecCC
Confidence 444443
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.55 E-value=0.013 Score=56.63 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=54.0
Q ss_pred HHHHHHHcCCCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCC
Q 016045 248 AIFAMARLGYNGIEVRVSETGWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGP 326 (396)
Q Consensus 248 v~~Am~k~g~~~~~vvVtETGWPS~G~~~~~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~yiF~~FDE-~wK~g~ 326 (396)
+.+.|++++-.++||+|||.+-|..+ +++.|+.++++++..+.+. | . ..-.++..+.|. .|.++
T Consensus 171 ~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~- 235 (254)
T smart00633 171 IRAALDRFASLGLEIQITELDISGYP-------NPQAQAADYEEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG- 235 (254)
T ss_pred HHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHHHHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC-
Confidence 33444544445899999999998753 3488999999999998752 2 1 233555555553 45543
Q ss_pred CCCCceeeecCCCceeEe
Q 016045 327 TSERNYGLFQPDGTMAYN 344 (396)
Q Consensus 327 ~~E~~wGlf~~d~~~ky~ 344 (396)
.+-|||+.|++||-.
T Consensus 236 ---~~~~L~d~~~~~kpa 250 (254)
T smart00633 236 ---GAPLLFDANYQPKPA 250 (254)
T ss_pred ---CCceeECCCCCCChh
Confidence 467999999988854
No 9
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.99 E-value=0.033 Score=54.71 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=54.6
Q ss_pred ceEEecCCCCC---CCCHHHH---HHHHhcCCCCEEEEcc--CChHHHHHHhcCCCeEEEEeccccc---cc------cC
Q 016045 29 LGVNYGQVANN---LPPPDKV---VDLLSSLKITKSRIYD--TNPQVLTAFANSNIELIVTVENQML---AV------LV 91 (396)
Q Consensus 29 ~GInYg~~~~n---lps~~~v---~~llks~~i~~VRiY~--~d~~vL~A~~~tgi~v~lGV~n~~~---~~------la 91 (396)
.|+|+...... .++.+++ ++++|..|++.||+.. .++..+.++...||-|+..++.... .. ..
T Consensus 18 ~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~ 97 (298)
T PF02836_consen 18 RGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDA 97 (298)
T ss_dssp EEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTT
T ss_pred EEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccCC
Confidence 69998764322 2455544 4577899999999964 3578999999999999988765111 00 01
Q ss_pred -C---HHHHHHHHHhcccccCCCceEEEEEecccc
Q 016045 92 -D---PQQALQWVSTHIKPYFPATKITGIAVGNEV 122 (396)
Q Consensus 92 -~---~~~A~~Wv~~~v~~~~p~~~I~~I~VGNEv 122 (396)
+ .+.+.+.+++.|..+...-.|..-.+|||.
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 98 DDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1 223334455556555422248889999998
No 10
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.72 E-value=0.041 Score=52.83 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=47.4
Q ss_pred ceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCCCCCCCCCceeeecCCC
Q 016045 260 IEVRVSETGWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMKPGPTSERNYGLFQPDG 339 (396)
Q Consensus 260 ~~vvVtETGWPS~G~~~~~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~yiF~~FDE~wK~g~~~E~~wGlf~~d~ 339 (396)
|||+|||.|+...+ ...+.+.++.|.+..+..+.+. | .--.++||. |..++. ....+-.|++.+|
T Consensus 166 kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~-~VeryawF~-~~~~~~---~~~~~~~L~~~~G 230 (239)
T PF11790_consen 166 KPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQ------P-YVERYAWFG-FMNDGS---GVNPNSALLDADG 230 (239)
T ss_pred CCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcC------C-CeeEEEecc-cccccC---CCccccccccCCC
Confidence 99999999987722 3588899999999999998742 2 245688888 333322 2455667777776
Q ss_pred ce
Q 016045 340 TM 341 (396)
Q Consensus 340 ~~ 341 (396)
++
T Consensus 231 ~l 232 (239)
T PF11790_consen 231 SL 232 (239)
T ss_pred Cc
Confidence 43
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=95.45 E-value=1.6 Score=45.58 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCCEEEEc--------c----CC-------hHHHHHHhcCCCeEEEEecc
Q 016045 44 DKVVDLLSSLKITKSRIY--------D----TN-------PQVLTAFANSNIELIVTVEN 84 (396)
Q Consensus 44 ~~v~~llks~~i~~VRiY--------~----~d-------~~vL~A~~~tgi~v~lGV~n 84 (396)
++.+++|++.|++.+|+= + .| .+++..+.+.||+++|.+.-
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H 116 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH 116 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc
Confidence 567889999999998862 1 12 25889999999999999954
No 12
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=91.58 E-value=3.2 Score=42.25 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=75.5
Q ss_pred CCCCEEEEccC-ChHHHHHHhcCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhH
Q 016045 53 LKITKSRIYDT-NPQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLI 131 (396)
Q Consensus 53 ~~i~~VRiY~~-d~~vL~A~~~tgi~v~lGV~n~~~~~la~~~~A~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~ 131 (396)
..+++|-+|+. |++++..++..|++|++..-.. .+.+++++.-..++++-| .+...-...+|-+==|-....+....
T Consensus 54 ~~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~ 131 (358)
T cd02875 54 SKVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEY 131 (358)
T ss_pred ccceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchH
Confidence 34788888854 7899999999999998864321 223445554444544432 22111134455544444322112224
Q ss_pred hhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccc-hhhHHHHHHHHHHhhhcCCCeeeeccccc
Q 016045 132 QNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFK-TEVAGIMSQYLQFLSSTKAPFWINAYTYF 206 (396)
Q Consensus 132 ~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~-~~~~~~l~~~ldfL~~~~sp~~vNiyPyf 206 (396)
+.+..-|+++|++|++.+.+-. +|.+... .|+..... -|+ +.|.+.+|| +.+-.|=|.
T Consensus 132 ~~~t~llkelr~~l~~~~~~~~--Lsvav~~-------~p~~~~~~~yd~-~~l~~~vD~-------v~lMtYD~h 190 (358)
T cd02875 132 YALTELVKETTKAFKKENPGYQ--ISFDVAW-------SPSCIDKRCYDY-TGIADASDF-------LVVMDYDEQ 190 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCcE--EEEEEec-------CcccccccccCH-HHHHhhCCE-------eeEEeeccc
Confidence 6788999999999998764322 4433221 11111110 122 457788999 667777654
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=89.70 E-value=0.36 Score=50.65 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=63.3
Q ss_pred HHHHHHHhcCCCCEEEEc--------c-----CC-------hHHHHHHhcCCCeEEEEeccccccc-------cCCHHHH
Q 016045 44 DKVVDLLSSLKITKSRIY--------D-----TN-------PQVLTAFANSNIELIVTVENQMLAV-------LVDPQQA 96 (396)
Q Consensus 44 ~~v~~llks~~i~~VRiY--------~-----~d-------~~vL~A~~~tgi~v~lGV~n~~~~~-------la~~~~A 96 (396)
++.+++||++|++..|.= + .| .+++..++..||+.+|.+.--+++. ..+++.+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 577899999999998874 1 12 2588999999999999988544432 1122222
Q ss_pred HHHHHhc----ccccCCCceEEEEEeccccccC-------C--Cc---------hhHhhHHHHHHHHHHHHHhcCCCCce
Q 016045 97 LQWVSTH----IKPYFPATKITGIAVGNEVFTD-------D--DT---------SLIQNLVPATVSIHGALVQLGLDKYI 154 (396)
Q Consensus 97 ~~Wv~~~----v~~~~p~~~I~~I~VGNEvl~~-------~--~~---------~~~~~Ll~am~~v~~aL~~~gl~~~I 154 (396)
++..+- ++.+ + .+|+..+.=||...- + .+ .....++-|-..+.+++++..-++
T Consensus 141 -~~F~~Ya~~~~~~~-g-d~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~-- 215 (455)
T PF00232_consen 141 -DWFARYAEFVFERF-G-DRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDG-- 215 (455)
T ss_dssp -HHHHHHHHHHHHHH-T-TTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTS--
T ss_pred -HHHHHHHHHHHHHh-C-CCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccce--
Confidence 222211 2222 3 367788888887521 0 00 112345666666667777766443
Q ss_pred EEecccc
Q 016045 155 QVSTPNS 161 (396)
Q Consensus 155 kVsT~~s 161 (396)
+|+..+.
T Consensus 216 ~IGi~~~ 222 (455)
T PF00232_consen 216 KIGIALN 222 (455)
T ss_dssp EEEEEEE
T ss_pred EEecccc
Confidence 5554443
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=88.32 E-value=22 Score=41.40 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=57.0
Q ss_pred ceEEecCCCC---CCCCHHHH---HHHHhcCCCCEEEEccC--ChHHHHHHhcCCCeEEEEecccc--------ccccC-
Q 016045 29 LGVNYGQVAN---NLPPPDKV---VDLLSSLKITKSRIYDT--NPQVLTAFANSNIELIVTVENQM--------LAVLV- 91 (396)
Q Consensus 29 ~GInYg~~~~---nlps~~~v---~~llks~~i~~VRiY~~--d~~vL~A~~~tgi~v~lGV~n~~--------~~~la- 91 (396)
.|+|+-.... ...+++++ ++++|+.|++.||+-.. ++..+.++...||=|+.-+..+. ...+.
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 5788643211 12345443 56789999999998642 46789999999998877542110 01112
Q ss_pred CH---HHHHHHHHhcccccCCCceEEEEEecccccc
Q 016045 92 DP---QQALQWVSTHIKPYFPATKITGIAVGNEVFT 124 (396)
Q Consensus 92 ~~---~~A~~Wv~~~v~~~~p~~~I~~I~VGNEvl~ 124 (396)
++ +...+-+++.|..+...-.|..-++|||.-.
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 22 1222334555555532235888999999743
No 15
>PRK09936 hypothetical protein; Provisional
Probab=86.33 E-value=38 Score=33.86 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=40.8
Q ss_pred ceEEecCCCCCC-CCHHHHHH---HHhcCCCCEEEE-c----cCC--------hHHHHHHhcCCCeEEEEeccc
Q 016045 29 LGVNYGQVANNL-PPPDKVVD---LLSSLKITKSRI-Y----DTN--------PQVLTAFANSNIELIVTVENQ 85 (396)
Q Consensus 29 ~GInYg~~~~nl-ps~~~v~~---llks~~i~~VRi-Y----~~d--------~~vL~A~~~tgi~v~lGV~n~ 85 (396)
-|+=|-+...|. -++++--+ .++..|++.+=+ | +.| .+.|+++.+.||+|.||++-|
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 466699988773 46666554 556688876543 2 223 468899999999999999975
No 16
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=76.22 E-value=20 Score=30.06 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhhcccccccceEEecCCCCCCCCHHHHHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEecccccc
Q 016045 9 ALIPFFLLLSLTFSDFGVTCLGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLA 88 (396)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~GInYg~~~~nlps~~~v~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV~n~~~~ 88 (396)
..+++++|.+++........+-|.-...+.++++.++|.+.|+..||..-++-- .|=++.+-..+.+
T Consensus 14 ~vl~~~~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~-----------~~~~llirf~~~~-- 80 (101)
T PF13721_consen 14 VVLLLGALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQ-----------EGDSLLIRFDSTD-- 80 (101)
T ss_pred HHHHHHHHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEe-----------eCCEEEEEECCHH--
Confidence 345556666777777788888888877777888888999999999886544421 2223444333222
Q ss_pred ccCCHHHHHHHHHhccc
Q 016045 89 VLVDPQQALQWVSTHIK 105 (396)
Q Consensus 89 ~la~~~~A~~Wv~~~v~ 105 (396)
++..|++.+++.+.
T Consensus 81 ---~Ql~Ak~~L~~~L~ 94 (101)
T PF13721_consen 81 ---QQLKAKDVLSKALG 94 (101)
T ss_pred ---HHHHHHHHHHHHcC
Confidence 35567777766554
No 17
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=73.50 E-value=15 Score=36.12 Aligned_cols=82 Identities=10% Similarity=0.146 Sum_probs=48.0
Q ss_pred hHHHHHHhcCCCeEEEEecccc--------ccccC-CHHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhHhhHH
Q 016045 65 PQVLTAFANSNIELIVTVENQM--------LAVLV-DPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLV 135 (396)
Q Consensus 65 ~~vL~A~~~tgi~v~lGV~n~~--------~~~la-~~~~A~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll 135 (396)
+.+++++++.|+||++.|.+.. ...+. ++..-... .++|..+...-.+.+|-+-=|.+... .....+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~f-i~~iv~~l~~~~~DGidiDwE~~~~~---d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRL-INNILALAKKYGYDGVNIDFENVPPE---DREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHH-HHHHHHHHHHhCCCcEEEecccCCHH---HHHHHH
Confidence 6788888889999999987642 11222 43322222 22232221111344555544654322 245688
Q ss_pred HHHHHHHHHHHhcCC
Q 016045 136 PATVSIHGALVQLGL 150 (396)
Q Consensus 136 ~am~~v~~aL~~~gl 150 (396)
.-++.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987765
No 18
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=70.02 E-value=9.4 Score=38.80 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCCCEEEEccC-------C---------hHHHHHHhcCCCeEEEEecccccc--------c----------
Q 016045 44 DKVVDLLSSLKITKSRIYDT-------N---------PQVLTAFANSNIELIVTVENQMLA--------V---------- 89 (396)
Q Consensus 44 ~~v~~llks~~i~~VRiY~~-------d---------~~vL~A~~~tgi~v~lGV~n~~~~--------~---------- 89 (396)
++.++++|..|++.|||-.. . -.+|..+++.||+|+|+++....+ .
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 45677888899999997422 1 248888999999999999632111 0
Q ss_pred ----------cCC---HHHHHHHHHhcccccCCCceEEEEEecccccc
Q 016045 90 ----------LVD---PQQALQWVSTHIKPYFPATKITGIAVGNEVFT 124 (396)
Q Consensus 90 ----------la~---~~~A~~Wv~~~v~~~~p~~~I~~I~VGNEvl~ 124 (396)
..+ .+.+.+.++.-++.|...-.|.++-|+||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 011 12344444444445543446999999999755
No 19
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.55 E-value=18 Score=37.19 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 016045 237 YDNMLYAQVDAAIFAMARLGYNGIEVRVSETGWPSKGDPNE---VGATVVNAATYNKNLLRRQMA 298 (396)
Q Consensus 237 Y~nlfda~vDav~~Am~k~g~~~~~vvVtETGWPS~G~~~~---~~AS~~Na~~y~~~li~~~~~ 298 (396)
|.|-|++-+--.-.-..-.|.+..+|+.| |||.|.-.+ ...|-+-++.-+.++++.+..
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 66666633322211222347778899987 999998532 235656666667777777764
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=65.55 E-value=14 Score=39.13 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCEEEE-------c--c---CC-------hHHHHHHhcCCCeEEEEecccccc
Q 016045 43 PDKVVDLLSSLKITKSRI-------Y--D---TN-------PQVLTAFANSNIELIVTVENQMLA 88 (396)
Q Consensus 43 ~~~v~~llks~~i~~VRi-------Y--~---~d-------~~vL~A~~~tgi~v~lGV~n~~~~ 88 (396)
-+|.++||+++|++..|. + + .| .+++.++.+.||+-+|.+.--+++
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 467889999988877765 2 1 13 258999999999999999865444
No 21
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=65.54 E-value=17 Score=33.07 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=44.0
Q ss_pred HHHHHhcC--CCeEEEEeccccccc---cC-CHHHHHHH---HHhcccccCCCceEEEEEeccccccCCCchhHhhHHHH
Q 016045 67 VLTAFANS--NIELIVTVENQMLAV---LV-DPQQALQW---VSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPA 137 (396)
Q Consensus 67 vL~A~~~t--gi~v~lGV~n~~~~~---la-~~~~A~~W---v~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~a 137 (396)
-++.++.. |+||++.|....... ++ +++...+. +.+-+..| .+.+|-+==|.....+......++..
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~----~~DGidiD~E~~~~~~~~~~~~~~~l 129 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTY----GFDGVDIDWEYPGAADNSDRENFITL 129 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHc----CCCceEEeeeCCCCcCccHHHHHHHH
Confidence 45556654 999999988643222 23 44333322 22223333 34444443344322110124678999
Q ss_pred HHHHHHHHHhcCC
Q 016045 138 TVSIHGALVQLGL 150 (396)
Q Consensus 138 m~~v~~aL~~~gl 150 (396)
|+.+|++|.+.++
T Consensus 130 l~~lr~~l~~~~~ 142 (210)
T cd00598 130 LRELRSALGAANY 142 (210)
T ss_pred HHHHHHHhcccCc
Confidence 9999999987654
No 22
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=65.47 E-value=65 Score=30.76 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCeEEEEecccccc---ccC-CHHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhHhhHHHHHHHH
Q 016045 66 QVLTAFANSNIELIVTVENQMLA---VLV-DPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSI 141 (396)
Q Consensus 66 ~vL~A~~~tgi~v~lGV~n~~~~---~la-~~~~A~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v 141 (396)
..+++++..|+||++.|.+.... .+. ++.....++++ +..+...-.+.+|-+==|-.... .......++++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~-lv~~~~~~~~DGIdiDwE~~~~~----~~~~~~fv~~L 124 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDK-IINYVVSYNLDGIDVDLEGPDVT----FGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHH-HHHHHHHhCCCceeEEeeccCcc----HhHHHHHHHHH
Confidence 35667777899999988764322 122 44433333332 22221111234444444543221 24567789999
Q ss_pred HHHHHhcCC
Q 016045 142 HGALVQLGL 150 (396)
Q Consensus 142 ~~aL~~~gl 150 (396)
|++|++.|+
T Consensus 125 r~~l~~~~~ 133 (253)
T cd06545 125 YAALKKEGK 133 (253)
T ss_pred HHHHhhcCc
Confidence 999987664
No 23
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=63.66 E-value=23 Score=26.50 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=35.6
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHhcCCCeEEEEecc
Q 016045 41 PPPDKVVDLLSSLKITKSRIYDTN-----PQVLTAFANSNIELIVTVEN 84 (396)
Q Consensus 41 ps~~~v~~llks~~i~~VRiY~~d-----~~vL~A~~~tgi~v~lGV~n 84 (396)
-+++++++..+.+|++.|=+=|-+ ....+.++..|++++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 467889999999999999887766 45666777899999999864
No 24
>PLN02998 beta-glucosidase
Probab=57.63 E-value=18 Score=38.61 Aligned_cols=75 Identities=21% Similarity=0.299 Sum_probs=43.2
Q ss_pred CCCceEEEeeecCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecC-CCCCCCCCCCceee
Q 016045 257 YNGIEVRVSETGWPSKGDP-NEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNE-DMKPGPTSERNYGL 334 (396)
Q Consensus 257 ~~~~~vvVtETGWPS~G~~-~~~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~yiF~~FDE-~wK~g~~~E~~wGl 334 (396)
+++.||+|||-|+....+. -...-=++--+.++..+.+.+. .|-+. .-+|.-++.|- .|..| .++.|||
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V-----~GY~~WSl~DnfEW~~G--y~~RfGL 460 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLR--KGSDV-----KGYFQWSLMDVFELFGG--YERSFGL 460 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhcc--ccCccce
Confidence 5455899999999865310 0001122333455555555554 34322 23556666662 34444 8999999
Q ss_pred ecCCCc
Q 016045 335 FQPDGT 340 (396)
Q Consensus 335 f~~d~~ 340 (396)
++.|.+
T Consensus 461 v~VD~~ 466 (497)
T PLN02998 461 LYVDFK 466 (497)
T ss_pred EEECCC
Confidence 998754
No 25
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=55.44 E-value=56 Score=31.12 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=26.8
Q ss_pred HHcCCCCceEEEeeecCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHh
Q 016045 253 ARLGYNGIEVRVSETGWPSKGDPNE---VGATVVNAATYNKNLLRRQMA 298 (396)
Q Consensus 253 ~k~g~~~~~vvVtETGWPS~G~~~~---~~AS~~Na~~y~~~li~~~~~ 298 (396)
..+++++.+|+. .|||.|...+ ...+....+..+.++++.+.+
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 345677766666 5999998533 234455555666667766654
No 26
>PLN02814 beta-glucosidase
Probab=55.33 E-value=31 Score=36.96 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCCEEEE-------cc-----CC-------hHHHHHHhcCCCeEEEEecccccc
Q 016045 44 DKVVDLLSSLKITKSRI-------YD-----TN-------PQVLTAFANSNIELIVTVENQMLA 88 (396)
Q Consensus 44 ~~v~~llks~~i~~VRi-------Y~-----~d-------~~vL~A~~~tgi~v~lGV~n~~~~ 88 (396)
+|.++|+|++|++.-|. += .| .+++.++.+.||+-+|.+.--+++
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 56789999988777764 31 13 258999999999999998855444
No 27
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=55.17 E-value=15 Score=33.50 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEe
Q 016045 46 VVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTV 82 (396)
Q Consensus 46 v~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV 82 (396)
-+|.|+..|+++||+.+.+|.-+.++.+.||+|.=-|
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 4688999999999999999999999999999996544
No 28
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=54.72 E-value=74 Score=34.33 Aligned_cols=75 Identities=13% Similarity=0.267 Sum_probs=49.6
Q ss_pred CCCCceEEEeeecCCCCCCCCC-------CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeec-CCCCCCCC
Q 016045 256 GYNGIEVRVSETGWPSKGDPNE-------VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFN-EDMKPGPT 327 (396)
Q Consensus 256 g~~~~~vvVtETGWPS~G~~~~-------~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~yiF~~FD-E~wK~g~~ 327 (396)
.|.|.+|.|+|-|-+...+... ...-.+..+.|++.+.+.+.. .|- ...-+|..++-| =.|..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhcC--
Confidence 5889999999999988755321 123355566667777777653 221 133478888887 345554
Q ss_pred CCCceeeecCC
Q 016045 328 SERNYGLFQPD 338 (396)
Q Consensus 328 ~E~~wGlf~~d 338 (396)
..--||||+.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 67889999953
No 29
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=54.58 E-value=65 Score=32.35 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=34.2
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCceEEeccccc--ccccccCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeecccccc
Q 016045 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSL--AVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207 (396)
Q Consensus 131 ~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~--~vl~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~ 207 (396)
...++..|+++|++|++.+. ...++.+... ..+...| ++ +.|.+.+|| +.+-.|-|..
T Consensus 133 ~~~~~~ll~~lr~~l~~~~~--~~~ls~av~~~~~~~~~~~---------d~-~~l~~~vD~-------v~vmtYD~~~ 192 (362)
T cd02872 133 KENFVTLLKELREAFEPEAP--RLLLTAAVSAGKETIDAAY---------DI-PEISKYLDF-------INVMTYDFHG 192 (362)
T ss_pred HHHHHHHHHHHHHHHHhhCc--CeEEEEEecCChHHHhhcC---------CH-HHHhhhcce-------EEEecccCCC
Confidence 46788999999999998731 1234433221 1111111 22 357788898 7777776654
No 30
>PLN02849 beta-glucosidase
Probab=53.24 E-value=26 Score=37.55 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCCEEEE-------cc-----CC-------hHHHHHHhcCCCeEEEEecccccc
Q 016045 44 DKVVDLLSSLKITKSRI-------YD-----TN-------PQVLTAFANSNIELIVTVENQMLA 88 (396)
Q Consensus 44 ~~v~~llks~~i~~VRi-------Y~-----~d-------~~vL~A~~~tgi~v~lGV~n~~~~ 88 (396)
+|.++||+++|++.-|. +- .| .+++.++.+.||+-+|.+.--+++
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 46788999988877764 31 13 258999999999999998854444
No 31
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=53.03 E-value=34 Score=31.87 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhHHHH-HHHHHHhhhcCCCeeeecc-ccccccCCCC
Q 016045 136 PATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIM-SQYLQFLSSTKAPFWINAY-TYFAYKDAPN 213 (396)
Q Consensus 136 ~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l-~~~ldfL~~~~sp~~vNiy-Pyf~~~~~p~ 213 (396)
.+++.+.+.+...|+.+ |++.+..... ++ .. +.. .++.+.+.+.+-|+.+|+- +.+...
T Consensus 85 ~~~~~l~~~~~~~g~~G-v~l~~~~~~~-----~~-~~--------~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~---- 145 (273)
T PF04909_consen 85 DAVEELERALQELGFRG-VKLHPDLGGF-----DP-DD--------PRLDDPIFEAAEELGLPVLIHTGMTGFPDA---- 145 (273)
T ss_dssp HHHHHHHHHHHTTTESE-EEEESSETTC-----CT-TS--------GHCHHHHHHHHHHHT-EEEEEESHTHHHHH----
T ss_pred hHHHHHHHhccccceee-eEecCCCCcc-----cc-cc--------HHHHHHHHHHHHhhccceeeeccccchhhh----
Confidence 57788888888899876 8877643211 11 10 122 3788889999988888753 111100
Q ss_pred ccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeeecCC
Q 016045 214 RISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSETGWP 270 (396)
Q Consensus 214 ~i~l~yAlf~~~~~~vd~~~~~~Y~nlfda~vDav~~Am~k~g~~~~~vvVtETGWP 270 (396)
..-..+...+...+++ +|+++|++.+.|+|
T Consensus 146 -------------------------~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 146 -------------------------PSDPADPEELEELLER--FPDLRIILAHLGGP 175 (273)
T ss_dssp -------------------------HHHHHHHHHHTTHHHH--STTSEEEESGGGTT
T ss_pred -------------------------hHHHHHHHHHHHHHHH--hcCCeEEEecCccc
Confidence 0111222223333444 89999999999999
No 32
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=51.54 E-value=22 Score=32.98 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=30.2
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEE
Q 016045 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELI 79 (396)
Q Consensus 47 ~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~ 79 (396)
.|.|+..|+++||+...++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998888889999999986
No 33
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=50.14 E-value=24 Score=33.00 Aligned_cols=33 Identities=27% Similarity=0.609 Sum_probs=30.3
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEE
Q 016045 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELI 79 (396)
Q Consensus 47 ~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~ 79 (396)
+|.|+..||++||+....+.-..++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998888889999999997
No 34
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=48.47 E-value=26 Score=35.04 Aligned_cols=219 Identities=16% Similarity=0.160 Sum_probs=109.2
Q ss_pred HHHHHHhcCCCeEE--EEecccccc----cc-C-C-------HHHHHHHHHhcccccCCC-ceEEEEEeccccccCCC--
Q 016045 66 QVLTAFANSNIELI--VTVENQMLA----VL-V-D-------PQQALQWVSTHIKPYFPA-TKITGIAVGNEVFTDDD-- 127 (396)
Q Consensus 66 ~vL~A~~~tgi~v~--lGV~n~~~~----~l-a-~-------~~~A~~Wv~~~v~~~~p~-~~I~~I~VGNEvl~~~~-- 127 (396)
.++.-++..|++|- .=||-...+ .. . + .+...++|++.+..| .+ .+|...=|=||++..+.
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 47777788898864 223532222 22 1 1 223345666655555 44 47999999999997642
Q ss_pred ----chh------HhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhcCCC
Q 016045 128 ----TSL------IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAP 197 (396)
Q Consensus 128 ----~~~------~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp 197 (396)
.+. ...+..+.+..|++...+.| - -+.|. ...++-...+..++..|.+.|-|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L------~--------~NDy~----~~~~~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADPNAKL------F--------YNDYN----IESPAKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSEE------E--------EEESS----TTSTHHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCCCcEE------E--------ecccc----ccchHHHHHHHHHHHHHHhCCCc
Confidence 011 13455566666666553222 1 12221 11111123455777777777766
Q ss_pred eeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCC
Q 016045 198 FWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSETGWPSKGDPNE 277 (396)
Q Consensus 198 ~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~vd~~~~~~Y~nlfda~vDav~~Am~k~g~~~~~vvVtETGWPS~G~~~~ 277 (396)
| |=.-+| ++.... +. .+.+..+|++..--+++|.|||--=........
T Consensus 204 I-------------------dgIG~Q---~H~~~~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~ 251 (320)
T PF00331_consen 204 I-------------------DGIGLQ---SHFDAG----YP------PEQIWNALDRFASLGLPIHITELDVRDDDNPPD 251 (320)
T ss_dssp S--------------------EEEEE---EEEETT----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSC
T ss_pred c-------------------ceechh---hccCCC----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcc
Confidence 3 111111 111110 00 344445555555557999999985443332110
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEE-EeecCC-CCCCCCCCCceeeecCCCceeE
Q 016045 278 VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLF-ALFNED-MKPGPTSERNYGLFQPDGTMAY 343 (396)
Q Consensus 278 ~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~yiF-~~FDE~-wK~g~~~E~~wGlf~~d~~~ky 343 (396)
....+.|+.+++++++.+.+.. |. .++.+.+ -+.|.. |.++.. -.+=+||+.|.+||-
T Consensus 252 -~~~~~~qA~~~~~~~~~~~~~~-----~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kp 311 (320)
T PF00331_consen 252 -AEEEEAQAEYYRDFLTACFSHP-----PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKP 311 (320)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-----HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-H
T ss_pred -hHHHHHHHHHHHHHHHHHHhCC-----cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCH
Confidence 2456778999999999988621 01 2444433 344433 554311 122379999999884
No 35
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=47.33 E-value=93 Score=36.41 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=57.3
Q ss_pred ceEEecCCCC---CCCCHHHH---HHHHhcCCCCEEEEcc--CChHHHHHHhcCCCeEEEEecccc-----ccccC-CHH
Q 016045 29 LGVNYGQVAN---NLPPPDKV---VDLLSSLKITKSRIYD--TNPQVLTAFANSNIELIVTVENQM-----LAVLV-DPQ 94 (396)
Q Consensus 29 ~GInYg~~~~---nlps~~~v---~~llks~~i~~VRiY~--~d~~vL~A~~~tgi~v~lGV~n~~-----~~~la-~~~ 94 (396)
.|+|+-.... .-.+++++ ++++|..|++.||+-. .++..++.+...||=|+--++.+. ...+. ++.
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 5788743211 12455554 5677899999999953 357899999999998876654321 01112 221
Q ss_pred ---HHHHHHHhcccccCCCceEEEEEeccccc
Q 016045 95 ---QALQWVSTHIKPYFPATKITGIAVGNEVF 123 (396)
Q Consensus 95 ---~A~~Wv~~~v~~~~p~~~I~~I~VGNEvl 123 (396)
+..+-+++.|......-.|..-++|||.-
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 22222444455543223588999999963
No 36
>PLN00196 alpha-amylase; Provisional
Probab=44.57 E-value=74 Score=33.40 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=33.0
Q ss_pred ceEEecCCCCCCCCHHHH---HHHHhcCCCCEE-----------------EEccCC----------hHHHHHHhcCCCeE
Q 016045 29 LGVNYGQVANNLPPPDKV---VDLLSSLKITKS-----------------RIYDTN----------PQVLTAFANSNIEL 78 (396)
Q Consensus 29 ~GInYg~~~~nlps~~~v---~~llks~~i~~V-----------------RiY~~d----------~~vL~A~~~tgi~v 78 (396)
-|+++-....+.-.-..+ +.-|+.+||+.| +.|+.| .+.++++.+.||+|
T Consensus 29 Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkV 108 (428)
T PLN00196 29 QGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQV 108 (428)
T ss_pred EeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEE
Confidence 588864422221112223 345677888777 445554 13778888899999
Q ss_pred EEEec
Q 016045 79 IVTVE 83 (396)
Q Consensus 79 ~lGV~ 83 (396)
++-+=
T Consensus 109 ilDvV 113 (428)
T PLN00196 109 IADIV 113 (428)
T ss_pred EEEEC
Confidence 99753
No 37
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=44.22 E-value=3.5e+02 Score=27.28 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=77.7
Q ss_pred ccCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeeccccccccCCCCccCccccccCCCC-------CcccCCCCcccch
Q 016045 167 ESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNS-------GMVDPYTKLHYDN 239 (396)
Q Consensus 167 ~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~-------~~vd~~~~~~Y~n 239 (396)
..+|...+.++++..+.+++++|.+.+.|+.+.+.+.-- +.......... ....|+. ......|.-.-..
T Consensus 62 ~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~--G~~~~~~~~~~-~~~~ps~~~~~~~~~~~~~mt~~eI~~ 138 (343)
T cd04734 62 SPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHL--GRRGDGDGSWL-PPLAPSAVPEPRHRAVPKAMEEEDIEE 138 (343)
T ss_pred cCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCC--CcCcCcccCCC-cccCCCCCCCCCCCCCCCcCCHHHHHH
Confidence 346667788888877889999999999999999987532 11110000000 0000000 0000111111234
Q ss_pred HHHHHHHHHHHHHHHcCCCCceEEEeeecC-------CCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 016045 240 MLYAQVDAAIFAMARLGYNGIEVRVSETGW-------PSK-GDPNEVGATVVNAATYNKNLLRRQMANEG 301 (396)
Q Consensus 240 lfda~vDav~~Am~k~g~~~~~vvVtETGW-------PS~-G~~~~~~AS~~Na~~y~~~li~~~~~~~G 301 (396)
+.+..++|...|. ++|+.+++|.-+- |+ |.. -..++-+.|++|-.+|...+++.+++.-|
T Consensus 139 ii~~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg 206 (343)
T cd04734 139 IIAAFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG 206 (343)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC
Confidence 4555566665554 4799999999765 64 422 11234568999999999999999997555
No 38
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=43.67 E-value=49 Score=33.50 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=32.7
Q ss_pred HHHHHhcCCCeEEEEeccccccc-cCCHHHHHHHHHhcccccC-----CCceEEEEEeccccccCCCc--hhHhhHHHHH
Q 016045 67 VLTAFANSNIELIVTVENQMLAV-LVDPQQALQWVSTHIKPYF-----PATKITGIAVGNEVFTDDDT--SLIQNLVPAT 138 (396)
Q Consensus 67 vL~A~~~tgi~v~lGV~n~~~~~-la~~~~A~~Wv~~~v~~~~-----p~~~I~~I~VGNEvl~~~~~--~~~~~Ll~am 138 (396)
+-+-++.+|++|+.|+.--.-.. +.....--.|=.+|-+.+. .+-+|.+-=.|||.-..+-. -.+.++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 44445579999999975210000 0001123457666644431 22357788899996542211 1256777777
Q ss_pred HHHHHHHHh
Q 016045 139 VSIHGALVQ 147 (396)
Q Consensus 139 ~~v~~aL~~ 147 (396)
..+|+.|+.
T Consensus 194 ~~Lr~il~~ 202 (319)
T PF03662_consen 194 IQLRKILNE 202 (319)
T ss_dssp ---HHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
No 39
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=41.32 E-value=1.3e+02 Score=31.14 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeecccccc
Q 016045 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207 (396)
Q Consensus 131 ~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~ 207 (396)
.+.++.-|+++|++|+..++ .+-++.+.... +...| |+ +.|.+.+|| +.+-.|=|+.
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~--~ls~av~~~~~--------~~~~~--d~-~~l~~~vD~-------inlMtYD~~g 224 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL--LLTLTVLPHVN--------STWYF--DV-PAIANNVDF-------VNLATFDFLT 224 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc--EEEEEecCCch--------hcccc--CH-HHHhhcCCE-------EEEEEecccC
Confidence 45688899999999987765 23332211100 00112 22 457788999 6666776654
No 40
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=40.95 E-value=31 Score=35.58 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEE
Q 016045 46 VVDLLSSLKITKSRIYDTNPQVLTAFANSNIELI 79 (396)
Q Consensus 46 v~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~ 79 (396)
-.|+|+..||++||+. .+|.-..++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 3689999999999999 78888889999999986
No 41
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=40.89 E-value=40 Score=31.32 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=30.0
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEE
Q 016045 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELI 79 (396)
Q Consensus 47 ~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~ 79 (396)
.|.|+..|++++|+.+..+.-+.++.+.||+|+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 688999999999999998878889999999997
No 42
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=39.86 E-value=1.5e+02 Score=29.37 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=34.5
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccc-hhhHHHHHHHHHHhhhcCCCeeeecccccc
Q 016045 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFK-TEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207 (396)
Q Consensus 131 ~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~-~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~ 207 (396)
...++.-|+++|++|++.|+ .+-++.+-.... .+....+. -++ +.|.+.+|| +.|-.|=|..
T Consensus 129 ~~~~~~~l~el~~~l~~~~~--~l~~~v~~~~~~-----~~~~~~~~~~d~-~~l~~~vD~-------v~lMtYD~~~ 191 (318)
T cd02876 129 RKELIQLVIHLGETLHSANL--KLILVIPPPREK-----GNQNGLFTRKDF-EKLAPHVDG-------FSLMTYDYSS 191 (318)
T ss_pred HHHHHHHHHHHHHHHhhcCC--EEEEEEcCcccc-----ccccccccccCH-HHHHhhccE-------EEEEeeccCC
Confidence 45688999999999988765 244443321110 00011111 122 457888999 6666665543
No 43
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=39.06 E-value=4.9e+02 Score=27.51 Aligned_cols=252 Identities=16% Similarity=0.217 Sum_probs=108.4
Q ss_pred HHHHHHhcCCCCEEEEccC---C--------------------hHHHHHHhcCCCeEEEEec--cccccc-----c----
Q 016045 45 KVVDLLSSLKITKSRIYDT---N--------------------PQVLTAFANSNIELIVTVE--NQMLAV-----L---- 90 (396)
Q Consensus 45 ~v~~llks~~i~~VRiY~~---d--------------------~~vL~A~~~tgi~v~lGV~--n~~~~~-----l---- 90 (396)
++..+.+..||+.||+... | -.++..+.+.|++-+|-+. ...+.+ .
T Consensus 44 ~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~ 123 (486)
T PF01229_consen 44 QLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKG 123 (486)
T ss_dssp HHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTE
T ss_pred HHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccC
Confidence 3344445689999998732 1 1488889999999655443 111110 0
Q ss_pred -----CCHHHH----HHHHHhcccccCCCceEE--EEEeccccccC--CCchhHhhHHHHHHHHHHHHHhcCCCCceEEe
Q 016045 91 -----VDPQQA----LQWVSTHIKPYFPATKIT--GIAVGNEVFTD--DDTSLIQNLVPATVSIHGALVQLGLDKYIQVS 157 (396)
Q Consensus 91 -----a~~~~A----~~Wv~~~v~~~~p~~~I~--~I~VGNEvl~~--~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVs 157 (396)
.+...- .++++.-+..| +...|. ..=|=||.=.. +......+-....+.+.++||+.. ..++|+
T Consensus 124 ~~~pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vG 200 (486)
T PF01229_consen 124 NISPPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVG 200 (486)
T ss_dssp E-S-BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEE
T ss_pred CcCCcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCccc
Confidence 011111 22233323333 111111 34568885322 111223456677778888888765 357888
Q ss_pred cccccccccccCCCCCCccchhhHHHHHHHHHHhhhcCCC---eeeeccccccccCCCCccCccccccCCCCCcccCCCC
Q 016045 158 TPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAP---FWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTK 234 (396)
Q Consensus 158 T~~s~~vl~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp---~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~vd~~~~ 234 (396)
-|-.. + +. ...+...++|+.+.+.| +..|.||+=......... +. .+.
T Consensus 201 Gp~~~--~--~~-----------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~---~~-------~~~---- 251 (486)
T PF01229_consen 201 GPAFA--W--AY-----------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENM---YE-------RIE---- 251 (486)
T ss_dssp EEEEE--T--T------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-E---EE-------EB-----
T ss_pred Ccccc--c--cH-----------HHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhH---Hh-------hhh----
Confidence 76110 0 00 12344555565554443 466777653221111000 00 000
Q ss_pred cccchHHHHHHHHHHHHHHHcCCCCceEEEeeecCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEE
Q 016045 235 LHYDNMLYAQVDAAIFAMARLGYNGIEVRVSETGWPSKGDPNE-VGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVY 313 (396)
Q Consensus 235 ~~Y~nlfda~vDav~~Am~k~g~~~~~vvVtETGWPS~G~~~~-~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~y 313 (396)
..+.++. ++.-+...+...+.+++++.++| |.+.-.... -.-|.-+|+-..+++++.... .++.|
T Consensus 252 -~~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~ 317 (486)
T PF01229_consen 252 -DSRRLFP-ELKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSF 317 (486)
T ss_dssp --HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEE
T ss_pred -hHHHHHH-HHHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhh
Confidence 0111222 22223234455678899999999 877654322 224556666555656655431 23332
Q ss_pred EEE----eecCCCCCCCCCCCceeeecCCCcee
Q 016045 314 LFA----LFNEDMKPGPTSERNYGLFQPDGTMA 342 (396)
Q Consensus 314 iF~----~FDE~wK~g~~~E~~wGlf~~d~~~k 342 (396)
-+= .|.|.--+....-.-|||++-+|-+|
T Consensus 318 sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 318 SYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp EES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred hccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 221 23332222223556699999998555
No 44
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.62 E-value=38 Score=34.92 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEE
Q 016045 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVT 81 (396)
Q Consensus 47 ~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lG 81 (396)
.|+|+..|+++||+.. +|.-..++.+.||+|.==
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~ 361 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGY 361 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEE
Confidence 6899999999999999 898889999999999733
No 45
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=37.10 E-value=80 Score=33.58 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCEEEE-------cc------CC-------hHHHHHHhcCCCeEEEEecccccc
Q 016045 43 PDKVVDLLSSLKITKSRI-------YD------TN-------PQVLTAFANSNIELIVTVENQMLA 88 (396)
Q Consensus 43 ~~~v~~llks~~i~~VRi-------Y~------~d-------~~vL~A~~~tgi~v~lGV~n~~~~ 88 (396)
-++.++||+++|++..|+ += .+ .+++..+.+.||+-+|.+.--+++
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 357789999988777664 31 23 258999999999999999865544
No 46
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=36.88 E-value=68 Score=34.02 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCCEEEE-------cc-----CC-------hHHHHHHhcCCCeEEEEecccccc
Q 016045 43 PDKVVDLLSSLKITKSRI-------YD-----TN-------PQVLTAFANSNIELIVTVENQMLA 88 (396)
Q Consensus 43 ~~~v~~llks~~i~~VRi-------Y~-----~d-------~~vL~A~~~tgi~v~lGV~n~~~~ 88 (396)
-++.++||+.+|++..|+ +- .| .+++.++.+.||+-+|.+.--+++
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 367789999888776664 31 12 258899999999999999865544
No 47
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.42 E-value=2.7e+02 Score=28.18 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=50.0
Q ss_pred ccceEEecCCCCCCCCHHHHHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEeccccccccCCHHHHHHHHHhcccc
Q 016045 27 TCLGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKP 106 (396)
Q Consensus 27 ~~~GInYg~~~~nlps~~~v~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV~n~~~~~la~~~~A~~Wv~~~v~~ 106 (396)
..+|||.-...++ |..++.++.+...++..|=+..-+|...+.++..|++|+.-|++ ...|..+.+.-+
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s--------~~~A~~a~~~Ga-- 124 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS--------PGLLKQFLENGA-- 124 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC--------HHHHHHHHHcCC--
Confidence 4578887443322 33455566666667777766655666678889999999877663 455655554322
Q ss_pred cCCCceEEEEEecccc
Q 016045 107 YFPATKITGIAVGNEV 122 (396)
Q Consensus 107 ~~p~~~I~~I~VGNEv 122 (396)
+ ..|+-|.|.
T Consensus 125 ----D--~vVaqG~EA 134 (320)
T cd04743 125 ----R--KFIFEGREC 134 (320)
T ss_pred ----C--EEEEecCcC
Confidence 1 247789997
No 48
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=35.38 E-value=67 Score=32.61 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=52.0
Q ss_pred hHHHHHHhcCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhHhhHHHHHHHHHHH
Q 016045 65 PQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGA 144 (396)
Q Consensus 65 ~~vL~A~~~tgi~v~lGV~n~~~~~la~~~~A~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~a 144 (396)
..||+++..+|-.+.+|=.- .+.+ +++.|..|+...+..++- .|.+|+--|.-..++ +-++
T Consensus 175 m~VLkp~idsGkik~~Ge~~--~d~W-~ps~Aq~~men~lta~~~--~vdaVvA~nDgtagG--------------aI~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQW--TDGW-LPSNAQQIMENLLTANYN--DIDAVVAPNDGTAGG--------------AIAA 235 (341)
T ss_pred HHHHHHHhhCCceEEeeecc--cccc-CHHHHHHHHHHHHhcccC--ceeEEEcCCCchhHH--------------HHHH
Confidence 46999998888555466322 2222 688899999888888754 488888766632221 1246
Q ss_pred HHhcCCCCceEEeccc
Q 016045 145 LVQLGLDKYIQVSTPN 160 (396)
Q Consensus 145 L~~~gl~~~IkVsT~~ 160 (396)
|++.||+++++||=-+
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 8889999889987544
No 49
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=34.79 E-value=2.4e+02 Score=24.61 Aligned_cols=46 Identities=22% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHhhhhcccccccceEEecCCCCCCCCHHHHHHHHhcCCCCEEEE
Q 016045 15 LLLSLTFSDFGVTCLGVNYGQVANNLPPPDKVVDLLSSLKITKSRI 60 (396)
Q Consensus 15 ~~~~~~~~~~~~~~~GInYg~~~~nlps~~~v~~llks~~i~~VRi 60 (396)
+|.+++........+-|.-...+...|...+|.+.|++.||..-++
T Consensus 24 ~lyAlPnlygedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi 69 (127)
T PRK10629 24 LLLAWSALRQQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSI 69 (127)
T ss_pred HHHHChhccCCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceE
Confidence 4556666666777777876655545688899999999988864444
No 50
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=34.34 E-value=4.9e+02 Score=26.75 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=33.6
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeecccccccc
Q 016045 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYK 209 (396)
Q Consensus 131 ~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~ 209 (396)
.++...+++.+|+.. .| +.+++.. +. .+| | |-.+.+...++|+.+.+ +-.+++|||--+-
T Consensus 272 ~~~~~~~v~~l~~~~--~g----i~i~~~~----Iv-G~P---g----ET~ed~~~tl~~i~~~~-~~~~~~~~~sp~p 331 (414)
T TIGR01579 272 RDDFLKLVNKLRSVR--PD----YAFGTDI----IV-GFP---G----ESEEDFQETLRMVKEIE-FSHLHIFPYSARP 331 (414)
T ss_pred HHHHHHHHHHHHHhC--CC----CeeeeeE----EE-ECC---C----CCHHHHHHHHHHHHhCC-CCEEEeeecCCCC
Confidence 456677777776632 22 4444432 21 344 1 22345677889988766 4456777765543
No 51
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=34.10 E-value=4.9e+02 Score=25.97 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=78.3
Q ss_pred cCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeeccccccccCCCCccCc------------cccccCCCCCcc------
Q 016045 168 SYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISL------------DYALFNPNSGMV------ 229 (396)
Q Consensus 168 sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l------------~yAlf~~~~~~v------ 229 (396)
.+|...+.+.++..+.++.+.|-+.+.|+.+++.++- .+.......+. ......|.....
T Consensus 63 ~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~ 140 (336)
T cd02932 63 ITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAH--AGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPT 140 (336)
T ss_pred CCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccC--CCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCC
Confidence 4565667778887788999999999999999999753 22211110000 000011111000
Q ss_pred -cCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeeec------CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 016045 230 -DPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSETG------WPSK-GDPNEVGATVVNAATYNKNLLRRQMANEG 301 (396)
Q Consensus 230 -d~~~~~~Y~nlfda~vDav~~Am~k~g~~~~~vvVtETG------WPS~-G~~~~~~AS~~Na~~y~~~li~~~~~~~G 301 (396)
...|--.-..+.+..+++...|. ++|+.+++|..+--. .|.. -..++-+.+++|-.+|...+++.+++.-|
T Consensus 141 p~~mt~~eI~~ii~~~~~aA~~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG 219 (336)
T cd02932 141 PRELTREEIAEVVDAFVAAARRAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP 219 (336)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC
Confidence 00111112345666677776664 479999999887522 2532 22233568999999999999999987544
No 52
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=34.00 E-value=77 Score=34.01 Aligned_cols=186 Identities=17% Similarity=0.231 Sum_probs=101.2
Q ss_pred HHHHHhcccccCCCceEEEEEeccccccCCCchhHhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCcc
Q 016045 97 LQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSF 176 (396)
Q Consensus 97 ~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F 176 (396)
...+..-|.+|--+..|.+-..-||.+.+.+. ....++...+.+.+-++..+=++-|.|+-+.+. |.. |-|-.+.
T Consensus 123 kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~-s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~-~~pyN~r- 197 (587)
T COG3934 123 KKYVEDLVKPYKLDPTIAGWALRNEPLVEAPI-SVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQ-YAPYNAR- 197 (587)
T ss_pred HHHHHHHhhhhccChHHHHHHhcCCccccccC-ChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccc-cCCcccc-
Confidence 35566667777655668888899997765433 467788888888888888776655666554433 221 3233333
Q ss_pred chhhHHHHHHHHHHhhhcCCCeeeeccccccccCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcC
Q 016045 177 KTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLG 256 (396)
Q Consensus 177 ~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~~vd~~~~~~Y~nlfda~vDav~~Am~k~g 256 (396)
..+|| -.-|+||+|.. +|. ....+..+.| |-+. + ..+|
T Consensus 198 ---------~~vDy-------a~~hLY~hyd~--sl~-~r~s~~yg~~------------~l~i-----~------~~~g 235 (587)
T COG3934 198 ---------FYVDY-------AANHLYRHYDT--SLV-SRVSTVYGKP------------YLDI-----P------TIMG 235 (587)
T ss_pred ---------eeecc-------ccchhhhhccC--Chh-heeeeeecch------------hhcc-----c------hhcc
Confidence 35566 66788986653 231 1112222211 1110 0 1122
Q ss_pred CCCceEEEeeecCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEeecCCCC--CC--CCCCCce
Q 016045 257 YNGIEVRVSETGWPSKGDPNEVGATVVNAATYNKNLLRRQMANEGTPLRPNMRLEVYLFALFNEDMK--PG--PTSERNY 332 (396)
Q Consensus 257 ~~~~~vvVtETGWPS~G~~~~~~AS~~Na~~y~~~li~~~~~~~GTp~rp~~~i~~yiF~~FDE~wK--~g--~~~E~~w 332 (396)
-+||+.-|-|-|++=.. +|.+.|.--..-.+. ..| ..--..-|+=|-+--. ++ ...|-.|
T Consensus 236 --~~pV~leefGfsta~g~-------e~s~ayfiw~~lal~-~gg------dGaLiwclsdf~~gsdd~ey~w~p~el~f 299 (587)
T COG3934 236 --WQPVNLEEFGFSTAFGQ-------ENSPAYFIWIRLALD-TGG------DGALIWCLSDFHLGSDDSEYTWGPMELEF 299 (587)
T ss_pred --cceeeccccCCcccccc-------cccchhhhhhhhHHh-hcC------CceEEEEecCCccCCCCCCCcccccccee
Confidence 38999999999997442 233333221111221 111 1112222333321111 11 1368889
Q ss_pred eeecCCCceeEee
Q 016045 333 GLFQPDGTMAYNV 345 (396)
Q Consensus 333 Glf~~d~~~ky~l 345 (396)
||.+.|+.+|+..
T Consensus 300 giIradgpek~~a 312 (587)
T COG3934 300 GIIRADGPEKIDA 312 (587)
T ss_pred eeecCCCchhhhH
Confidence 9999999999965
No 53
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=32.93 E-value=2.8e+02 Score=27.42 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeeccccccccCCCCccC
Q 016045 137 ATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRIS 216 (396)
Q Consensus 137 am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~ 216 (396)
+..++++..++.|..+ +++..... ..+| + .+.+.++..+..+.|.|+.+|.=+......
T Consensus 114 a~~E~er~v~~~gf~g-~~l~p~~~-----~~~~------~---~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~------ 172 (293)
T COG2159 114 AAEELERRVRELGFVG-VKLHPVAQ-----GFYP------D---DPRLYPIYEAAEELGVPVVIHTGAGPGGAG------ 172 (293)
T ss_pred HHHHHHHHHHhcCceE-EEeccccc-----CCCC------C---ChHHHHHHHHHHHcCCCEEEEeCCCCCCcc------
Confidence 5667777777777754 65543321 1111 1 133678889999999999996543332221
Q ss_pred ccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeeec--CCCCCC
Q 016045 217 LDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSETG--WPSKGD 274 (396)
Q Consensus 217 l~yAlf~~~~~~vd~~~~~~Y~nlfda~vDav~~Am~k~g~~~~~vvVtETG--WPS~G~ 274 (396)
++... .++ .++|.+ .. -+|+++||+++.| +|..-.
T Consensus 173 ~~~~~-------~~p-----------~~~~~v---a~--~fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 173 LEKGH-------SDP-----------LYLDDV---AR--KFPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred cccCC-------CCc-----------hHHHHH---HH--HCCCCcEEEEecCCCCchhHH
Confidence 11100 010 123322 22 2899999999999 887643
No 54
>PRK08815 GTP cyclohydrolase; Provisional
Probab=31.92 E-value=61 Score=33.52 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=32.1
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEec
Q 016045 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (396)
Q Consensus 47 ~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV~ 83 (396)
.|+|+..|+++||+...++.-+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999888899999999974343
No 55
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.92 E-value=62 Score=33.66 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=32.5
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEec
Q 016045 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (396)
Q Consensus 47 ~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV~ 83 (396)
.|.|+..|+++||+...++.-..++.+.||+|.=-++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6889999999999999999989999999999974444
No 56
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=31.64 E-value=3.9e+02 Score=26.99 Aligned_cols=55 Identities=9% Similarity=-0.069 Sum_probs=31.7
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeecccc
Q 016045 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTY 205 (396)
Q Consensus 131 ~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPy 205 (396)
...+...++.+++.|++..- ..+|+|-.... +.. ..|. ..+.+.+|+ +..|.||.
T Consensus 208 ~~~~~~~~~~~~~~ir~~~p--~~~vt~n~~~~-~~~---------~~d~-~~~a~~~D~-------~~~d~Y~~ 262 (374)
T PF02449_consen 208 SDRVAEFFRWQADIIREYDP--DHPVTTNFMGS-WFN---------GIDY-FKWAKYLDV-------VSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHST--T-EEE-EE-TT-------------SS-H-HHHGGGSSS-------EEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHhCC--CceEEeCcccc-ccC---------cCCH-HHHHhhCCc-------ceeccccC
Confidence 45688889999999998863 36777653221 100 0111 124556677 89999998
No 57
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.50 E-value=4.5e+02 Score=24.80 Aligned_cols=88 Identities=11% Similarity=0.241 Sum_probs=54.2
Q ss_pred CHHHHHHHHhcCCCCEEEEccCC---hHHHHHHhc--CCCeEEEEeccccccccCCHHHHHHHHHhcccccCCCceEEEE
Q 016045 42 PPDKVVDLLSSLKITKSRIYDTN---PQVLTAFAN--SNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPATKITGI 116 (396)
Q Consensus 42 s~~~v~~llks~~i~~VRiY~~d---~~vL~A~~~--tgi~v~lGV~n~~~~~la~~~~A~~Wv~~~v~~~~p~~~I~~I 116 (396)
+++|+.+.++ .|.+.|++|-++ ++-++++++ .+++++.- ..+ +.+++.+|++. .+.+|
T Consensus 118 T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~at---GGI----~~~N~~~~l~a---------Ga~~v 180 (213)
T PRK06552 118 TVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVT---GGV----NLDNVKDWFAA---------GADAV 180 (213)
T ss_pred CHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEE---CCC----CHHHHHHHHHC---------CCcEE
Confidence 7888877764 789999999655 567777775 34665421 112 45677778763 35688
Q ss_pred EeccccccCCCchhHhhHHHHHHHHHHHHH
Q 016045 117 AVGNEVFTDDDTSLIQNLVPATVSIHGALV 146 (396)
Q Consensus 117 ~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~ 146 (396)
.||...+........+.+-...++++++++
T Consensus 181 avgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 181 GIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 899887643111113445555555555543
No 58
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=31.45 E-value=1.2e+02 Score=32.43 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCEEEE-------cc------CC-------hHHHHHHhcCCCeEEEEecccccc
Q 016045 44 DKVVDLLSSLKITKSRI-------YD------TN-------PQVLTAFANSNIELIVTVENQMLA 88 (396)
Q Consensus 44 ~~v~~llks~~i~~VRi-------Y~------~d-------~~vL~A~~~tgi~v~lGV~n~~~~ 88 (396)
++.+++|+..|++..|+ +- .+ ..++.++.+.||+.+|.+.--+++
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P 138 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVP 138 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 56788999888776664 31 23 258899999999999998865544
No 59
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=31.42 E-value=1e+02 Score=26.04 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHhcCCCeEE
Q 016045 45 KVVDLLSSLKITKSRIY--DTN---PQVLTAFANSNIELI 79 (396)
Q Consensus 45 ~v~~llks~~i~~VRiY--~~d---~~vL~A~~~tgi~v~ 79 (396)
++.+.++.+|++.|+++ +.. ..+|++++..|++|.
T Consensus 51 ~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 51 DAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 34566677999999888 333 569999999999864
No 60
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=31.30 E-value=1e+02 Score=30.46 Aligned_cols=79 Identities=14% Similarity=0.247 Sum_probs=40.7
Q ss_pred HHHHhc--CCCeEEEEeccc----cccccC-CHHHHHHHHHhcccccCCCceEEEEEeccccccCCCchhHhhHHHHHHH
Q 016045 68 LTAFAN--SNIELIVTVENQ----MLAVLV-DPQQALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVS 140 (396)
Q Consensus 68 L~A~~~--tgi~v~lGV~n~----~~~~la-~~~~A~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~ 140 (396)
+.+++. .++||++.|... ....+. ++..-..++ ++|..+...-...+|-+==|...... +....++..|++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi-~~i~~~~~~~~~DGidiDwE~~~~~~-~d~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFI-DSIVSFLKKYGFDGIDIDWEYPGARG-DDRENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHH-HHHHHHHHHcCCCeEEECCcCCCCCc-cHHHHHHHHHHH
Confidence 455555 489999988752 222333 433222222 22222211123556655444432210 123568888999
Q ss_pred HHHHHHhc
Q 016045 141 IHGALVQL 148 (396)
Q Consensus 141 v~~aL~~~ 148 (396)
+|+.|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999864
No 61
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.24 E-value=64 Score=33.69 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=32.5
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEec
Q 016045 46 VVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (396)
Q Consensus 46 v~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV~ 83 (396)
..++|+..|+++||+..-+|.-..++.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 36889999999999999999888899999999973333
No 62
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.23 E-value=60 Score=33.15 Aligned_cols=35 Identities=9% Similarity=0.238 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCEEEEccCC-hHHHHHHhcCCCeEE
Q 016045 45 KVVDLLSSLKITKSRIYDTN-PQVLTAFANSNIELI 79 (396)
Q Consensus 45 ~v~~llks~~i~~VRiY~~d-~~vL~A~~~tgi~v~ 79 (396)
-..|+|+..|+++||+..-+ |.-..++.+.||+|.
T Consensus 299 igaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 299 IGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 34689999999999999999 888889999999986
No 63
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.79 E-value=3.4e+02 Score=25.39 Aligned_cols=100 Identities=12% Similarity=0.236 Sum_probs=58.3
Q ss_pred CHHHHHHHHhcCCCCEEEEc-cC-C--hHHHHHHhcCCCeEEEEeccccccccCCHHHHHHHHHhcccccCCC-ceEEEE
Q 016045 42 PPDKVVDLLSSLKITKSRIY-DT-N--PQVLTAFANSNIELIVTVENQMLAVLVDPQQALQWVSTHIKPYFPA-TKITGI 116 (396)
Q Consensus 42 s~~~v~~llks~~i~~VRiY-~~-d--~~vL~A~~~tgi~v~lGV~n~~~~~la~~~~A~~Wv~~~v~~~~p~-~~I~~I 116 (396)
.|++.++.++..|.+.|=+- ++ + ..+++.+++.|+++-+.++.+. .+ +.+.+|.+. +.|...
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~-----------~~~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV-----------EELEPYLDQVDMVLVM 134 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G-----------GGGTTTGCCSSEEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc-----------hHHHHHhhhcCEEEEE
Confidence 46677777776666655332 22 2 3688999999999877665432 11 124455554 233333
Q ss_pred EeccccccCCCchhHhhHHHHHHHHHHHHHhcCCCCceEEe
Q 016045 117 AVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVS 157 (396)
Q Consensus 117 ~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVs 157 (396)
+| |.=. +.+.+.+..+..|+.+|+.+.+.|++-.|.|-
T Consensus 135 sV--~PG~-~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vD 172 (201)
T PF00834_consen 135 SV--EPGF-GGQKFIPEVLEKIRELRKLIPENGLDFEIEVD 172 (201)
T ss_dssp SS---TTT-SSB--HGGHHHHHHHHHHHHHHHTCGSEEEEE
T ss_pred Ee--cCCC-CcccccHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 33 2212 23456788999999999999998875545443
No 64
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=30.71 E-value=1.4e+02 Score=31.79 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCEEEE-------cc------CC-------hHHHHHHhcCCCeEEEEecccccc
Q 016045 43 PDKVVDLLSSLKITKSRI-------YD------TN-------PQVLTAFANSNIELIVTVENQMLA 88 (396)
Q Consensus 43 ~~~v~~llks~~i~~VRi-------Y~------~d-------~~vL~A~~~tgi~v~lGV~n~~~~ 88 (396)
-++.++||+++|++..|. .- .+ .+++.++.+.||+-+|.++--+++
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP 140 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCP 140 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 367789999988877764 31 13 258899999999999999865544
No 65
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=30.13 E-value=67 Score=34.93 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEec
Q 016045 46 VVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (396)
Q Consensus 46 v~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV~ 83 (396)
..++|+..||++||+..-+|.-+.++++.||+|.=-++
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 36889999999999999999999999999999874444
No 66
>PRK09989 hypothetical protein; Provisional
Probab=29.93 E-value=4.8e+02 Score=24.61 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=81.6
Q ss_pred eEEecCCCCCCCCHHHHHHHHhcCCCCEEEEc---cCC-hHHHHHHhcCCCeEEE-Eecccccc-------ccC-CHHHH
Q 016045 30 GVNYGQVANNLPPPDKVVDLLSSLKITKSRIY---DTN-PQVLTAFANSNIELIV-TVENQMLA-------VLV-DPQQA 96 (396)
Q Consensus 30 GInYg~~~~nlps~~~v~~llks~~i~~VRiY---~~d-~~vL~A~~~tgi~v~l-GV~n~~~~-------~la-~~~~A 96 (396)
.+|.+..-.++ |-.+.++.++..|++.|-+. +-+ .++.+.++++||++.. +.+..++. ... ...++
T Consensus 5 ~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09989 5 AANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEA 83 (258)
T ss_pred eeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHH
Confidence 45555554454 56788889999999999884 333 4577788899999875 32211111 111 23333
Q ss_pred HHHHHhcccc--cCCCceEEEEEeccccccCCC-chhHhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCC
Q 016045 97 LQWVSTHIKP--YFPATKITGIAVGNEVFTDDD-TSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSA 173 (396)
Q Consensus 97 ~~Wv~~~v~~--~~p~~~I~~I~VGNEvl~~~~-~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~ 173 (396)
.+.+++.+.- .+....| .|..|.-. ...+ ......++..++.+-...++.|. .+.+-. +...+-+
T Consensus 84 ~~~l~~~i~~A~~lg~~~v-~v~~g~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv--~l~lE~------l~~~~~~-- 151 (258)
T PRK09989 84 RADIDLALEYALALNCEQV-HVMAGVVP-AGEDAERYRAVFIDNLRYAADRFAPHGK--RILVEA------LSPGVKP-- 151 (258)
T ss_pred HHHHHHHHHHHHHhCcCEE-EECccCCC-CCCCHHHHHHHHHHHHHHHHHHHHhcCC--EEEEEe------CCCCCCC--
Confidence 3344443321 1222222 33445311 1111 11234567777777666666664 222211 1000101
Q ss_pred CccchhhHHHHHHHHHHhhhcCCC-eeeecccccccc
Q 016045 174 GSFKTEVAGIMSQYLQFLSSTKAP-FWINAYTYFAYK 209 (396)
Q Consensus 174 g~F~~~~~~~l~~~ldfL~~~~sp-~~vNiyPyf~~~ 209 (396)
+.+-. ...++.++|.+.++| +.+..-.|+...
T Consensus 152 ~~~~~----~~~~~~~ll~~v~~~~v~l~lD~~h~~~ 184 (258)
T PRK09989 152 HYLFS----SQYQALAIVEEVARDNVFIQLDTFHAQK 184 (258)
T ss_pred CCccC----CHHHHHHHHHHcCCCCeEEEeehHhHHH
Confidence 11111 234677888887765 666666666554
No 67
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=29.92 E-value=99 Score=32.93 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCEEEE-------cc------CC-------hHHHHHHhcCCCeEEEEeccccc
Q 016045 43 PDKVVDLLSSLKITKSRI-------YD------TN-------PQVLTAFANSNIELIVTVENQML 87 (396)
Q Consensus 43 ~~~v~~llks~~i~~VRi-------Y~------~d-------~~vL~A~~~tgi~v~lGV~n~~~ 87 (396)
-++.++||+++|++..|+ +- .+ .+++.++.+.||+.+|.+.=-++
T Consensus 71 y~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 71 YKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred cHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 467789999888776654 31 23 25899999999999999964333
No 68
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=29.90 E-value=67 Score=34.07 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=32.1
Q ss_pred HHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEec
Q 016045 47 VDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (396)
Q Consensus 47 ~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV~ 83 (396)
.++|+..||++||+..-+|.-+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6889999999999999999989999999999973333
No 69
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=27.72 E-value=2.6e+02 Score=28.80 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=69.4
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccc--hhhHHHHHHHHHHhhhcCCCeeeeccccccc
Q 016045 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFK--TEVAGIMSQYLQFLSSTKAPFWINAYTYFAY 208 (396)
Q Consensus 131 ~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~--~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~ 208 (396)
.+++...+++.|+. .||+.+-..-.-+...+ +.|. ++.-+-++.+++.|.+.|--++++++|+...
T Consensus 42 ~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~ 109 (441)
T PF01055_consen 42 QDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSN 109 (441)
T ss_dssp HHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEET
T ss_pred HHHHHHHHHHHHHc--------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccCC
Confidence 45566666666552 47777654322232222 2222 2111346788999999999999999998876
Q ss_pred cCCCCccCccccccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCC----CCceEEEeeecCCCCCCCCCCCCCHHH
Q 016045 209 KDAPNRISLDYALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGY----NGIEVRVSETGWPSKGDPNEVGATVVN 284 (396)
Q Consensus 209 ~~~p~~i~l~yAlf~~~~~~vd~~~~~~Y~nlfda~vDav~~Am~k~g~----~~~~vvVtETGWPS~G~~~~~~AS~~N 284 (396)
... +|..| +. + ++.|+ ++-+..+++. ||-.+.- ..-+-.+
T Consensus 110 ~~~------~~~~~-------------------~~-------~-~~~~~~v~~~~g~~~~~~~-w~g~~~~--~Dftnp~ 153 (441)
T PF01055_consen 110 DSP------DYENY-------------------DE-------A-KEKGYLVKNPDGSPYIGRV-WPGKGGF--IDFTNPE 153 (441)
T ss_dssp TTT------B-HHH-------------------HH-------H-HHTT-BEBCTTSSB-EEEE-TTEEEEE--B-TTSHH
T ss_pred CCC------cchhh-------------------hh-------H-hhcCceeecccCCcccccc-cCCcccc--cCCCChh
Confidence 532 12111 11 1 11222 2235677777 8844221 1234455
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccEEEEEe
Q 016045 285 AATYNKNLLRRQMANEGTPLRPNMRLEVYLFAL 317 (396)
Q Consensus 285 a~~y~~~li~~~~~~~GTp~rp~~~i~~yiF~~ 317 (396)
++.++.+.++.+... ..++.++..+
T Consensus 154 a~~w~~~~~~~~~~~--------~Gvdg~w~D~ 178 (441)
T PF01055_consen 154 ARDWWKEQLKELLDD--------YGVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHHHHHTT--------ST-SEEEEES
T ss_pred HHHHHHHHHHHHHhc--------cCCceEEeec
Confidence 888887777777641 2588988876
No 70
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.43 E-value=1.3e+02 Score=26.28 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCCEEEEccC---------------------C--hHHHHHHhcCCCeEEEEecc
Q 016045 43 PDKVVDLLSSLKITKSRIYDT---------------------N--PQVLTAFANSNIELIVTVEN 84 (396)
Q Consensus 43 ~~~v~~llks~~i~~VRiY~~---------------------d--~~vL~A~~~tgi~v~lGV~n 84 (396)
|+++++.||..+++.|-+|.- | .++++|+++.||+|++-+--
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 567777787777777777532 1 36889999999999886643
No 71
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=27.31 E-value=4e+02 Score=24.65 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCCceEEEeee-cCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHh
Q 016045 245 VDAAIFAMARLGYNGIEVRVSET-GWPSKGDPN-EVGATVVNAATYNKNLLRRQMA 298 (396)
Q Consensus 245 vDav~~Am~k~g~~~~~vvVtET-GWPS~G~~~-~~~AS~~Na~~y~~~li~~~~~ 298 (396)
++..+..+. .+||++||++.|. ++|.. ..+ ....+.+..+...+..++.+.+
T Consensus 80 ~~~fv~~iR-~~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 80 LDGFVKTIR-EAHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp HHHHHHHHH-TT-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333443 4799999999994 45444 433 2457778888888888888764
No 72
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=26.98 E-value=1.2e+02 Score=26.26 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCEEEEccCChHHHHHHhcCCCeEEEEec
Q 016045 45 KVVDLLSSLKITKSRIYDTNPQVLTAFANSNIELIVTVE 83 (396)
Q Consensus 45 ~v~~llks~~i~~VRiY~~d~~vL~A~~~tgi~v~lGV~ 83 (396)
.+.++|+.+|++.|=+...-+..+.+|++.||+|+.+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999998888889999999999999999866
No 73
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.36 E-value=6.2e+02 Score=24.78 Aligned_cols=131 Identities=17% Similarity=0.215 Sum_probs=77.8
Q ss_pred cccCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeeccccccccCCCCccCccccccCCC-------CCcccCCCCcccc
Q 016045 166 EESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFAYKDAPNRISLDYALFNPN-------SGMVDPYTKLHYD 238 (396)
Q Consensus 166 ~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~-------~~~vd~~~~~~Y~ 238 (396)
...+|...|.+.++..+-+++++|.+.+.|+.+.+.++.- +......... .....|+ .......|.-.-.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~--G~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~mt~~ei~ 137 (327)
T cd02803 61 GKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA--GRQAQPNLTG-GPPPAPSAIPSPGGGEPPREMTKEEIE 137 (327)
T ss_pred ccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC--CcCCCCcCCC-CCccCCCCCCCCCCCCCCCcCCHHHHH
Confidence 3457888888888888889999999999999998887431 1111100000 0000010 0000111111233
Q ss_pred hHHHHHHHHHHHHHHHcCCCCceEEEeeec-------CCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 016045 239 NMLYAQVDAAIFAMARLGYNGIEVRVSETG-------WPSKG-DPNEVGATVVNAATYNKNLLRRQMANEG 301 (396)
Q Consensus 239 nlfda~vDav~~Am~k~g~~~~~vvVtETG-------WPS~G-~~~~~~AS~~Na~~y~~~li~~~~~~~G 301 (396)
.+.+...++...|. ++|+.+++|..+ -| .|..- ..++-+.|++|-.+|....++.+++.-|
T Consensus 138 ~~i~~~~~aA~~a~-~aGfDgveih~~-~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 138 QIIEDFAAAARRAK-EAGFDGVEIHGA-HGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG 206 (327)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEcch-hhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 45555556665554 479999999875 24 35421 1233568899999999999999986443
No 74
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=24.81 E-value=5.9e+02 Score=23.98 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC-----------hHHHHHHhcCCCeEEEEecccc---ccccC---CHHHHHHHHHhc
Q 016045 41 PPPDKVVDLLSSLKITKSRIYDTN-----------PQVLTAFANSNIELIVTVENQM---LAVLV---DPQQALQWVSTH 103 (396)
Q Consensus 41 ps~~~v~~llks~~i~~VRiY~~d-----------~~vL~A~~~tgi~v~lGV~n~~---~~~la---~~~~A~~Wv~~~ 103 (396)
|++ ...+.+|+.+...|=.|=++ +.=++.+...|++|+. |++.. ..... -...|.+-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 444 55667788888877777332 2356778889999754 56532 11111 123344434444
Q ss_pred ccccCCCceEEEEEeccccccCCCchhHhhHHHHHHHHHHHHHhcCCC
Q 016045 104 IKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLD 151 (396)
Q Consensus 104 v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl~ 151 (396)
..--.|...+.++.|=...... +....++|+++-+.++|...|+.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~~---~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALDD---EVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCcc---hhHHHHHHHHHHHHHHHHhcCCc
Confidence 3333465567788886655332 23578999999999999999874
No 75
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.74 E-value=6.7e+02 Score=24.57 Aligned_cols=138 Identities=9% Similarity=0.102 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHhcCCCCEEEEccCC-------hHHHHH---HhcCCCeEEEEeccccc----cccCCHHHHHHHHHhcc
Q 016045 39 NLPPPDKVVDLLSSLKITKSRIYDTN-------PQVLTA---FANSNIELIVTVENQML----AVLVDPQQALQWVSTHI 104 (396)
Q Consensus 39 nlps~~~v~~llks~~i~~VRiY~~d-------~~vL~A---~~~tgi~v~lGV~n~~~----~~la~~~~A~~Wv~~~v 104 (396)
+.++|.++.+.|+..|+++|-+-.+. ..+++. ++..--++.+|-|.=.. ++..+.....+-+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 57899999999999999999998775 234443 33344589999875110 01112233333344433
Q ss_pred cccCCCceEEEEEeccccccCCCchhHhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhHHHH
Q 016045 105 KPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIM 184 (396)
Q Consensus 105 ~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l 184 (396)
..-.++..+..+-=||+-. .... -..++..|++.++. ++-|+|.+. || ++
T Consensus 136 ~~~~~~~a~vlmGHGt~h~-------an~~---Y~~l~~~l~~~~~~-~v~vgtvEG-------~P--------~~---- 185 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPHP-------ANAA---YSALQAMLKKHGYP-NVFVGTVEG-------YP--------SL---- 185 (262)
T ss_dssp -TT-TTEEEEEEE---SCH-------HHHH---HHHHHHHHHCCT-T-TEEEEETTS-------SS--------BH----
T ss_pred cccCCCCEEEEEeCCCCCC-------ccHH---HHHHHHHHHhCCCC-eEEEEEeCC-------CC--------CH----
Confidence 3222344455555555421 2222 33446668887764 488998753 44 22
Q ss_pred HHHHHHhhhcCCCeeeecccccc
Q 016045 185 SQYLQFLSSTKAPFWINAYTYFA 207 (396)
Q Consensus 185 ~~~ldfL~~~~sp~~vNiyPyf~ 207 (396)
..+++.|.+.|-- -|.+.||.-
T Consensus 186 ~~vi~~L~~~g~k-~V~L~PlMl 207 (262)
T PF06180_consen 186 EDVIARLKKKGIK-KVHLIPLML 207 (262)
T ss_dssp HHHHHHHHHHT-S-EEEEEEESS
T ss_pred HHHHHHHHhcCCC-eEEEEeccc
Confidence 2344445544322 378889885
No 76
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=24.33 E-value=1.6e+02 Score=25.39 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCEEEEc--c--------CC---hHHHHHHhcCCCeEE
Q 016045 44 DKVVDLLSSLKITKSRIY--D--------TN---PQVLTAFANSNIELI 79 (396)
Q Consensus 44 ~~v~~llks~~i~~VRiY--~--------~d---~~vL~A~~~tgi~v~ 79 (396)
+++.+..+.+|++.|+++ . +. ...|++++..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 345566677899988877 3 33 469999999999974
No 77
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=23.58 E-value=1.5e+02 Score=25.09 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHhcCCCeEEE
Q 016045 45 KVVDLLSSLKITKSRIY--DTN---PQVLTAFANSNIELIV 80 (396)
Q Consensus 45 ~v~~llks~~i~~VRiY--~~d---~~vL~A~~~tgi~v~l 80 (396)
.+.+.++.+|++.|+++ +.. ..++++++.+|++|.-
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566677899988888 333 4699999999999643
No 78
>PLN03059 beta-galactosidase; Provisional
Probab=23.54 E-value=9.1e+02 Score=27.90 Aligned_cols=114 Identities=8% Similarity=0.007 Sum_probs=68.5
Q ss_pred HHHHHHhcCCCCEEEEccC------C------------hHHHHHHhcCCCeEEEEec---------------ccccccc-
Q 016045 45 KVVDLLSSLKITKSRIYDT------N------------PQVLTAFANSNIELIVTVE---------------NQMLAVL- 90 (396)
Q Consensus 45 ~v~~llks~~i~~VRiY~~------d------------~~vL~A~~~tgi~v~lGV~---------------n~~~~~l- 90 (396)
+..+.+|..|++.|-+|-. . ..-|+.+++.||.|++-.. .-..+.+
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 3456668899999999832 1 2467788899999988542 1111121
Q ss_pred --C-CH---HHHHHHHHhc---cc--cc-C-CCceEEEEEeccccccCCCchhHhhHHHHHHHHHHHHHhcCCCCceEEe
Q 016045 91 --V-DP---QQALQWVSTH---IK--PY-F-PATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVS 157 (396)
Q Consensus 91 --a-~~---~~A~~Wv~~~---v~--~~-~-p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVs 157 (396)
. ++ ++.++|+..- |. ++ + .+..|..+=|-||.=.- +.+....=-.+|+.+++.+++.|++ |+.-
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~-~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~ 219 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPV-EWEIGAPGKAYTKWAADMAVKLGTG--VPWV 219 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccce-ecccCcchHHHHHHHHHHHHHcCCC--cceE
Confidence 1 32 3455665443 21 22 1 23468899999995211 0000112257899999999999984 6766
Q ss_pred cccc
Q 016045 158 TPNS 161 (396)
Q Consensus 158 T~~s 161 (396)
|.+.
T Consensus 220 t~dg 223 (840)
T PLN03059 220 MCKQ 223 (840)
T ss_pred ECCC
Confidence 6654
No 79
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=23.44 E-value=3.9e+02 Score=25.47 Aligned_cols=75 Identities=5% Similarity=-0.035 Sum_probs=48.0
Q ss_pred HHHHHHHhcccccCCCceEEEEEeccccccCCCchhHhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCC
Q 016045 95 QALQWVSTHIKPYFPATKITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAG 174 (396)
Q Consensus 95 ~A~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g 174 (396)
...+|+.+..... +..++.|-++.-.++..+.. . .|.++.+++.++.+. .+-+.||+ +..++|
T Consensus 44 ~la~~~~~~~~~~--g~~v~~idl~~lPl~~~d~~---~-~p~v~~l~~~v~~AD---gvii~TPE----Yn~sip---- 106 (219)
T TIGR02690 44 LLAEEAARLLGCE--GRETRIFDPPGLPLPDAAHA---D-HPKVRELRQLSEWSE---GQVWCSPE----RHGAIT---- 106 (219)
T ss_pred HHHHHHHHHHhhc--CCEEEEeCcccCCCCCcCcc---c-CHHHHHHHHHHHhCC---EEEEeCCc----cccCcC----
Confidence 3445666654422 34566666676666654322 2 678888888888763 36688885 344455
Q ss_pred ccchhhHHHHHHHHHHhhh
Q 016045 175 SFKTEVAGIMSQYLQFLSS 193 (396)
Q Consensus 175 ~F~~~~~~~l~~~ldfL~~ 193 (396)
..|+.++|||+.
T Consensus 107 -------g~LKNaiDwls~ 118 (219)
T TIGR02690 107 -------GSQKDQIDWIPL 118 (219)
T ss_pred -------HHHHHHHHhccc
Confidence 578999999764
No 80
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=23.39 E-value=2.9e+02 Score=26.10 Aligned_cols=78 Identities=8% Similarity=0.155 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCeEEEEecccccc-cc--C-CHHHHHHHHHh---cccccCCCceEEEEEeccccccCCC----chhHhhH
Q 016045 66 QVLTAFANSNIELIVTVENQMLA-VL--V-DPQQALQWVST---HIKPYFPATKITGIAVGNEVFTDDD----TSLIQNL 134 (396)
Q Consensus 66 ~vL~A~~~tgi~v~lGV~n~~~~-~l--a-~~~~A~~Wv~~---~v~~~~p~~~I~~I~VGNEvl~~~~----~~~~~~L 134 (396)
+.++.++..|+||++.|...... .+ . +++.+++++++ -+..| .+.+|-+-=|-..... .......
T Consensus 55 ~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~y----glDGiDiD~E~~~~~~~~~~~~~~~~~ 130 (255)
T cd06542 55 TYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKY----GLDGVDFDDEYSGYGKNGTSQPSNEAF 130 (255)
T ss_pred HHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHh----CCCceEEeeeecccCCCCCCcchHHHH
Confidence 46667788999999888653322 22 2 44444444332 23333 3556665555432210 1124568
Q ss_pred HHHHHHHHHHHHh
Q 016045 135 VPATVSIHGALVQ 147 (396)
Q Consensus 135 l~am~~v~~aL~~ 147 (396)
+..|+.+|+.+..
T Consensus 131 ~~lv~~Lr~~~~~ 143 (255)
T cd06542 131 VRLIKELRKYMGP 143 (255)
T ss_pred HHHHHHHHHHhCc
Confidence 8889999988854
No 81
>PRK07198 hypothetical protein; Validated
Probab=23.13 E-value=67 Score=33.52 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHhcCCCCEE-EEccCChHHHHHHhcCCCeEEEEec
Q 016045 47 VDLLSSLKITKS-RIYDTNPQVLTAFANSNIELIVTVE 83 (396)
Q Consensus 47 ~~llks~~i~~V-RiY~~d~~vL~A~~~tgi~v~lGV~ 83 (396)
.|.|+.+||++| |+...++.-..++.+.||+|.=-++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578899999999 9999999889999999999975454
No 82
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.07 E-value=1.5e+02 Score=28.64 Aligned_cols=56 Identities=11% Similarity=0.177 Sum_probs=40.0
Q ss_pred cccccccceEEecCCCCCCC----CHHHHHHHHhcCCCCEEEEccCC--------hHHHHHHhcCCCe
Q 016045 22 SDFGVTCLGVNYGQVANNLP----PPDKVVDLLSSLKITKSRIYDTN--------PQVLTAFANSNIE 77 (396)
Q Consensus 22 ~~~~~~~~GInYg~~~~nlp----s~~~v~~llks~~i~~VRiY~~d--------~~vL~A~~~tgi~ 77 (396)
.....+.+=|+-|+..+..+ +.+..+++|+.+|.+.||.|-.. ..|-+|++..|+.
T Consensus 112 PTG~~G~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 112 PTGTPGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred CCCccceEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCc
Confidence 33444555577777655543 44667889999999999999765 2477888888875
No 83
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.53 E-value=6.6e+02 Score=23.67 Aligned_cols=49 Identities=6% Similarity=0.021 Sum_probs=35.2
Q ss_pred EEecCCCCCCCCHHHHHHHHhcCCCCEEEEccC---C-hHHHHHHhcCCCeEEE
Q 016045 31 VNYGQVANNLPPPDKVVDLLSSLKITKSRIYDT---N-PQVLTAFANSNIELIV 80 (396)
Q Consensus 31 InYg~~~~nlps~~~v~~llks~~i~~VRiY~~---d-~~vL~A~~~tgi~v~l 80 (396)
+|.+..-.++ +.++.++.++..|++.|-++.. + ..+.+.++.+||++..
T Consensus 6 ~~~~~~~~~~-~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 6 ANLSMLFGEY-DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeehhccCC-CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 4444433344 3677888899999999998754 3 3577788899999874
No 84
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=22.09 E-value=1.6e+02 Score=25.35 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=35.7
Q ss_pred CCHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHhcCCCeEEEEecc
Q 016045 41 PPPDKVVDLLSSLKITKSRIYDTN-----PQVLTAFANSNIELIVTVEN 84 (396)
Q Consensus 41 ps~~~v~~llks~~i~~VRiY~~d-----~~vL~A~~~tgi~v~lGV~n 84 (396)
.+++++++..+++|++.|=+=|-+ +.-.+.++..||++++|+-.
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 488999999999999988887654 34566677799999999975
No 85
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=21.69 E-value=6.5e+02 Score=23.35 Aligned_cols=68 Identities=24% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCCCceEEEeee---cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCCCCCCCcccEEEEEeec
Q 016045 244 QVDAAIFAMARLGYNGIEVRVSET---GWPSKGDPNEVGATVVNAATYNKNLLRRQMAN-EGTPLRPNMRLEVYLFALFN 319 (396)
Q Consensus 244 ~vDav~~Am~k~g~~~~~vvVtET---GWPS~G~~~~~~AS~~Na~~y~~~li~~~~~~-~GTp~rp~~~i~~yiF~~FD 319 (396)
.+|.+..+.++. ++.|+|.=- ||...++. .......+.++.++.+.+... ++. -....|+++|
T Consensus 63 ~ld~~v~~a~~~---gi~vild~h~~~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~~-------~~v~~~el~N 129 (281)
T PF00150_consen 63 RLDRIVDAAQAY---GIYVILDLHNAPGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKDN-------PPVVGWELWN 129 (281)
T ss_dssp HHHHHHHHHHHT---T-EEEEEEEESTTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTTT-------TTTEEEESSS
T ss_pred HHHHHHHHHHhC---CCeEEEEeccCccccccccc---cccchhhHHHHHhhhhhhccccCCC-------CcEEEEEecC
Confidence 344444455554 567776543 47444442 233343444444433333321 111 1355789999
Q ss_pred CCCCC
Q 016045 320 EDMKP 324 (396)
Q Consensus 320 E~wK~ 324 (396)
|+--.
T Consensus 130 EP~~~ 134 (281)
T PF00150_consen 130 EPNGG 134 (281)
T ss_dssp SGCST
T ss_pred Ccccc
Confidence 98664
No 86
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.55 E-value=4.7e+02 Score=24.12 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCCCEEEEccCC---------hHHHHHHhcCCCeEEEE--eccccccccC-CHHHHHHHHHhcccccCCCc
Q 016045 44 DKVVDLLSSLKITKSRIYDTN---------PQVLTAFANSNIELIVT--VENQMLAVLV-DPQQALQWVSTHIKPYFPAT 111 (396)
Q Consensus 44 ~~v~~llks~~i~~VRiY~~d---------~~vL~A~~~tgi~v~lG--V~n~~~~~la-~~~~A~~Wv~~~v~~~~p~~ 111 (396)
.++++.|..+|.++|=+.... ....++++..|+++... .+.....+.. ..+.+.+|++++ +
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-- 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P-- 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C--
Confidence 445666666777776655432 12445667788776211 1111111111 134455665542 1
Q ss_pred eEEEEEeccccccCCCchhHhhHHHHHHHHHHHHHhcCC--CCceEEecccccccccccCCCCCCccchhhHHHHHHHHH
Q 016045 112 KITGIAVGNEVFTDDDTSLIQNLVPATVSIHGALVQLGL--DKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQ 189 (396)
Q Consensus 112 ~I~~I~VGNEvl~~~~~~~~~~Ll~am~~v~~aL~~~gl--~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l~~~ld 189 (396)
.+++|...|+.+.. . +.++|++.|+ .++|.|.+-+.......-..|...+...+....-+.+++
T Consensus 171 ~~~ai~~~~d~~a~----------g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~ 236 (265)
T cd01543 171 KPVGIFACTDARAR----------Q----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAK 236 (265)
T ss_pred CCcEEEecChHHHH----------H----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHH
Confidence 24577766654321 1 2234555565 345776665544332222234444455444333344555
Q ss_pred Hh
Q 016045 190 FL 191 (396)
Q Consensus 190 fL 191 (396)
.|
T Consensus 237 ~l 238 (265)
T cd01543 237 LL 238 (265)
T ss_pred HH
Confidence 43
No 87
>CHL00041 rps11 ribosomal protein S11
Probab=21.41 E-value=2e+02 Score=24.63 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCCEEEEc--cCC---hHHHHHHhcCCCeEE
Q 016045 45 KVVDLLSSLKITKSRIY--DTN---PQVLTAFANSNIELI 79 (396)
Q Consensus 45 ~v~~llks~~i~~VRiY--~~d---~~vL~A~~~tgi~v~ 79 (396)
++.+.++.+|++.|+++ +.. ..++++++..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 34556677899988888 332 569999999999974
No 88
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=21.40 E-value=1.7e+02 Score=22.70 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=26.5
Q ss_pred HHHHHHhcccccCCCceEEEEEeccccccCC--CchhHhhHHHHHHHHHHHHHh
Q 016045 96 ALQWVSTHIKPYFPATKITGIAVGNEVFTDD--DTSLIQNLVPATVSIHGALVQ 147 (396)
Q Consensus 96 A~~Wv~~~v~~~~p~~~I~~I~VGNEvl~~~--~~~~~~~Ll~am~~v~~aL~~ 147 (396)
-..|+++||.- |+|.++++ +..-.+.|+|+++..++.++.
T Consensus 13 Li~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~ 54 (65)
T PF06117_consen 13 LIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRP 54 (65)
T ss_pred HHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHH
Confidence 46799988763 33444432 222356899999999888764
No 89
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=21.25 E-value=1.9e+02 Score=25.54 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCEEEEc--c--------CC---hHHHHHHhcCCCeEE
Q 016045 44 DKVVDLLSSLKITKSRIY--D--------TN---PQVLTAFANSNIELI 79 (396)
Q Consensus 44 ~~v~~llks~~i~~VRiY--~--------~d---~~vL~A~~~tgi~v~ 79 (396)
+++.+.++.+|++.|+++ + +. ..+|++++..||+|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 345566678999988887 3 33 469999999999974
No 90
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.83 E-value=2.1e+02 Score=27.21 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=47.7
Q ss_pred ccccceEEecCCCCCCCCHHHHHHHHhcCCCCEEEEccCC-----hHHHHHHhcCCCeEEEEeccccccccCCHHHHHHH
Q 016045 25 GVTCLGVNYGQVANNLPPPDKVVDLLSSLKITKSRIYDTN-----PQVLTAFANSNIELIVTVENQMLAVLVDPQQALQW 99 (396)
Q Consensus 25 ~~~~~GInYg~~~~nlps~~~v~~llks~~i~~VRiY~~d-----~~vL~A~~~tgi~v~lGV~n~~~~~la~~~~A~~W 99 (396)
--+.+||.|-...-.++. .--++++||+- ..+.++....-..+++..-...-.+. .....|
T Consensus 41 ~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf---eni~~W 106 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF---ENIRNW 106 (207)
T ss_pred ccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH---HHHHHH
Confidence 344578887554334443 12467889885 34666665544455554433222333 344557
Q ss_pred HHhcccccCCCceEEEEEecccc
Q 016045 100 VSTHIKPYFPATKITGIAVGNEV 122 (396)
Q Consensus 100 v~~~v~~~~p~~~I~~I~VGNEv 122 (396)
++ +|..+.++ .+.-|.|||-.
T Consensus 107 ~~-~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 107 IK-NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred HH-HHHhhCCC-CCcEEEeeccc
Confidence 65 36677654 58889999975
No 91
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.32 E-value=9.3e+02 Score=25.01 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=31.8
Q ss_pred HhhHHHHHHHHHHHHHhcCCCCceEEecccccccccccCCCCCCccchhhHHHHHHHHHHhhhcCCCeeeecccccc
Q 016045 131 IQNLVPATVSIHGALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEVAGIMSQYLQFLSSTKAPFWINAYTYFA 207 (396)
Q Consensus 131 ~~~Ll~am~~v~~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~~~~l~~~ldfL~~~~sp~~vNiyPyf~ 207 (396)
.++...+++.+++.+. .+.++|. ++. .|| | |-.+.+...++|+.+.+ +-.+++++|--
T Consensus 281 ~~~~~~~i~~lr~~~~------~i~i~~d----~Iv-G~P---g----ET~ed~~~tl~~i~~l~-~~~~~~~~~sp 338 (439)
T PRK14328 281 REYYLELVEKIKSNIP------DVAITTD----IIV-GFP---G----ETEEDFEETLDLVKEVR-YDSAFTFIYSK 338 (439)
T ss_pred HHHHHHHHHHHHHhCC------CCEEEEE----EEE-ECC---C----CCHHHHHHHHHHHHhcC-CCcccceEecC
Confidence 5667777777766531 2445442 222 355 1 12245667888887765 34567766653
No 92
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=20.09 E-value=1e+02 Score=31.13 Aligned_cols=104 Identities=25% Similarity=0.388 Sum_probs=62.0
Q ss_pred hhHHHHHHHHH-HHHHhcCCCCceEEecccccccccccCCCCCCccchhh--HHHHHHHHHHhhhcCCCeeeeccccccc
Q 016045 132 QNLVPATVSIH-GALVQLGLDKYIQVSTPNSLAVLEESYPPSAGSFKTEV--AGIMSQYLQFLSSTKAPFWINAYTYFAY 208 (396)
Q Consensus 132 ~~Ll~am~~v~-~aL~~~gl~~~IkVsT~~s~~vl~~sypPS~g~F~~~~--~~~l~~~ldfL~~~~sp~~vNiyPyf~~ 208 (396)
-++..-|.+.- +.+...|+...|-.-|-.+++.-+..|.|.+|.=. -+ .++|+ +|| ++|+
T Consensus 113 ~ei~e~iEnttR~li~e~gl~aGi~FPtG~SlN~cAAHyTpNaGd~t-VLqydDV~K--iDf--------Gthi------ 175 (397)
T KOG2775|consen 113 IEICETIENTTRKLILENGLNAGIGFPTGCSLNHCAAHYTPNAGDKT-VLKYDDVMK--IDF--------GTHI------ 175 (397)
T ss_pred HHHHHHHHHHHHHHHHhccccccccCCCcccccchhhhcCCCCCCce-eeeecceEE--Eec--------cccc------
Confidence 45666666644 46667778777777788888777778999999632 00 01221 333 3333
Q ss_pred cCCCCccCccc-cccCCCCCcccCCCCcccchHHHHHHHHHHHHHHHcCCCCceEEEeeec
Q 016045 209 KDAPNRISLDY-ALFNPNSGMVDPYTKLHYDNMLYAQVDAAIFAMARLGYNGIEVRVSETG 268 (396)
Q Consensus 209 ~~~p~~i~l~y-Alf~~~~~~vd~~~~~~Y~nlfda~vDav~~Am~k~g~~~~~vvVtETG 268 (396)
+..-|.-.| ..|+| .|++|+.|.-||.+.-++.+| +.|.+.+.|
T Consensus 176 --~GrIiDsAFTv~F~p-----------~~d~Ll~AvreaT~tGIkeaG---iDvRlcdiG 220 (397)
T KOG2775|consen 176 --DGRIIDSAFTVAFNP-----------KYDPLLAAVREATNTGIKEAG---IDVRLCDIG 220 (397)
T ss_pred --cCeEeeeeeEEeeCc-----------cccHHHHHHHHHHhhhhhhcC---ceeeehhhh
Confidence 111122122 12332 488899988898888887765 566666655
Done!