BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016046
(396 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3
PE=1 SV=1
Length = 619
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 273 DESCSHQSNVPKS-SLMERNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKRKAVS--PLKN 329
D H +V S ++++ N Y+ D S+DE S+ LP + KA++ PL
Sbjct: 437 DSGIPHADDVIDSRNIVDSNLELVPYQGDISVDEPSSDSKELVPLPELEVKALAIVPLNQ 496
Query: 330 H-DVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLI-LKSNPGAFDERTEVDLKDKW 387
T+LA+RR ++ +S+ E +AL + VE+ G G W+ + L++ A D RT VDLKDKW
Sbjct: 497 KPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDA-DHRTYVDLKDKW 555
Query: 388 RNMT 391
+ +
Sbjct: 556 KTLV 559
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYSF 395
KK+KW++EE + ++ GV+++G+GNW I K+ P F RT V +KD+WR M R
Sbjct: 446 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 499
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1
PE=1 SV=1
Length = 300
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNP---GAFDERTEVDLKDKWRNMT 391
K+KW+ EEE AL+ GV + G G W+ ILK +P G R+ VDLKDKWRNM+
Sbjct: 5 KQKWTQEEESALKSGVIKHGPGKWRTILK-DPEFSGVLYLRSNVDLKDKWRNMS 57
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 316 LPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAF 375
+P K + V+P K+ R RK++ W EE+ LR GV ++G+GNW IL F
Sbjct: 362 IPVSKSQPVTPEKH-------RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--F 412
Query: 376 DERTEVDLKDKWRNMTR 392
+ RT V LKD+WR M +
Sbjct: 413 NNRTSVMLKDRWRTMKK 429
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1
SV=3
Length = 439
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 9/77 (11%)
Query: 316 LPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAF 375
+P K + V+P K+ R RK++ W EE+ LR GV ++G+GNW IL F
Sbjct: 362 IPVSKSQPVTPEKH-------RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--F 412
Query: 376 DERTEVDLKDKWRNMTR 392
+ RT V LKD+WR M +
Sbjct: 413 NNRTSVMLKDRWRTMKK 429
>sp|O35144|TERF2_MOUSE Telomeric repeat-binding factor 2 OS=Mus musculus GN=Terf2 PE=1
SV=3
Length = 541
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYSF 395
+K+KW++EE + ++ GV ++G+GNW I KS P F RT V +KD+WR M +
Sbjct: 487 RKQKWTIEESEWVKDGVRKYGEGNWAAISKSYP--FVNRTAVMIKDRWRTMKKLGM 540
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1
SV=1
Length = 421
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392
RRK++ W EE+ L+ GV+++G+GNW IL F+ RT V LKD+WR M R
Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHYK--FNNRTSVMLKDRWRTMKR 416
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGA--FDERTEVDLKDKWRNMT 391
+K KW+ EEE+AL GV + G G WK IL+ A R+ +DLKDKWRN++
Sbjct: 4 QKLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLS 57
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana
GN=At1g72740 PE=2 SV=1
Length = 287
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 4/55 (7%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDE---RTEVDLKDKWRNMT 391
+K KW+ EEE+AL G+ + G G WK IL+ +P D+ R+ +DLKDKWRN++
Sbjct: 4 QKLKWTAEEEEALLAGIRKHGPGKWKNILR-DPEFADQLIHRSNIDLKDKWRNLS 57
>sp|Q9PU53|TERF2_CHICK Telomeric repeat-binding factor 2 OS=Gallus gallus GN=TERF2 PE=1
SV=2
Length = 718
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392
KK+KW+++E + ++ GV ++G+G WK I + P F RT V +KD++R M +
Sbjct: 664 KKQKWTVQESEWIKDGVRKYGEGRWKTISEKYP--FQNRTSVQIKDRYRTMKK 714
>sp|Q9M2X3|TRB3_ARATH Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3
PE=1 SV=1
Length = 295
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNP---GAFDERTEVDLKDKWRNMTRYSFY 396
K KW+ EEE AL+ GV + G G W+ IL S+P R+ VDLKDKWRN++ + +
Sbjct: 5 KLKWTPEEETALKAGVLKHGTGKWRTIL-SDPVYSTILKSRSNVDLKDKWRNISVTALW 62
>sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2
PE=1 SV=1
Length = 299
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGA--FDERTEVDLKDKWRNMTRYSFY 396
K+KW+ EEE AL+ GV + G G W+ IL + R+ VDLKDKWRN++ + +
Sbjct: 5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTALW 62
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4
PE=1 SV=1
Length = 640
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 333 TKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLI-LKSNPGAFDERTEVDLKDKWRNMT 391
T+L++RR ++ +S+ E +AL VE+ G G W+ + L+S A RT VDLKDKW+ +
Sbjct: 527 TELSQRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENA-SHRTYVDLKDKWKTLV 585
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1
PE=1 SV=2
Length = 633
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%)
Query: 281 NVPKSSLMERNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRK 340
+ P SL + S + EW S F P+ A PL +RR
Sbjct: 474 DFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRSKRPDFGQRRI 533
Query: 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391
++ +++ E + L + VE G G W+ + RT VDLKDKW+ +
Sbjct: 534 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 584
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2
PE=1 SV=1
Length = 553
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391
A+RR ++ +S+ E +AL + VE+ G G W+ + D RT VDLKDKW+ +
Sbjct: 448 AQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLV 503
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5
PE=1 SV=2
Length = 630
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 8/73 (10%)
Query: 323 AVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLI-LKSNPGAFD---ER 378
V P + +++A+RR ++ +S+ E +AL + VE+ G G W+ + L+ AFD R
Sbjct: 510 TVVPPRKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLR----AFDNAKHR 565
Query: 379 TEVDLKDKWRNMT 391
T VDLKDKW+ +
Sbjct: 566 TYVDLKDKWKTLV 578
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6
PE=1 SV=1
Length = 400
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 334 KLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391
++ +RR ++ +++ E +AL + VE+ G G W+ + + RT VDLKDKW+ +
Sbjct: 308 EMVQRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLKDKWKTLV 365
>sp|Q9S7G7|MB3R1_ARATH Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2
SV=1
Length = 776
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
ARR K +W+ EE++ L K VE+F NWK I + F +RT+V +W+ +
Sbjct: 30 ARRSTKGQWTPEEDEVLCKAVERFQGKNWKKIAE----CFKDRTDVQCLHRWQKV 80
>sp|Q10274|MU152_SCHPO Meiotically up-regulated gene 152 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug152 PE=1 SV=1
Length = 390
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
R+ + KW+ +E + L +G + G GNWK IL F R+ DLKD++R +
Sbjct: 52 RKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHFTNRSPNDLKDRFRTI 104
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1
PE=1 SV=2
Length = 578
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 344 WSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391
+S+ E +AL + VE+ G G W+ + D RT VDLKDKW+ +
Sbjct: 471 FSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLV 518
>sp|Q02457|TBF1_YEAST Protein TBF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TBF1 PE=1 SV=2
Length = 562
Score = 38.9 bits (89), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGA-----FDERTEVDLKDKWRN 389
L + + K+ WS EEE+AL +G+++ G K++ PG RT+V LKDK RN
Sbjct: 403 LRKPKAKRTWSKEEEEALVEGLKEVGPSWSKILDLYGPGGKITENLKNRTQVQLKDKARN 462
>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2
Length = 640
Score = 38.5 bits (88), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
R K +W+ EE++ L+K VEQ G +WK+I P RT+V + +W+ +
Sbjct: 36 RHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN----RTDVQCQHRWQKV 85
>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1
Length = 640
Score = 38.5 bits (88), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
R K +W+ EE++ L+K VEQ G +WK+I P RT+V + +W+ +
Sbjct: 36 RHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN----RTDVQCQHRWQKV 85
>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2
Length = 636
Score = 38.5 bits (88), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
R K +W+ EE++ L+K VEQ G +WK+I P RT+V + +W+ +
Sbjct: 36 RHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN----RTDVQCQHRWQKV 85
>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1
Length = 624
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 332 VTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
++K R K +W+ EE++ L+K VEQ G WK+I P RT+V + +W+ +
Sbjct: 28 LSKGKRHLGKTRWTREEDEKLKKLVEQNGTEEWKVIASFLPN----RTDVQCQHRWQKV 82
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 344 WSLEEEDALRKGVEQFGKGNWKLI 367
WS EE + K +E++G+GNWKLI
Sbjct: 232 WSNEEHELFLKAIEKYGRGNWKLI 255
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1
Length = 855
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
KK +WS EE+ L V +GKGNW LI G RT+V ++++ N+
Sbjct: 651 KKGRWSPEEDQCLINAVNAYGKGNWILIKNHVKG----RTDVQCRERYCNV 697
>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1
Length = 641
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
R K +W+ EE++ L+K VEQ G +WK+I P RT+V + +W+ +
Sbjct: 36 RHLGKTRWTREEDEKLKKLVEQNGTEDWKVIASFLPN----RTDVQCQHRWQKV 85
>sp|Q1LX29|CCD79_DANRE Coiled-coil domain-containing protein 79 OS=Danio rerio GN=ccdc79
PE=2 SV=2
Length = 814
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392
R RK++ WS +E L KGV++FG +W IL P RT VDL K+ +M +
Sbjct: 746 GRHRKRQNWSDKELCYLTKGVKRFGH-SWNTILWKYP-FHPGRTNVDLAKKFYHMQK 800
>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2
SV=1
Length = 305
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRN 389
R K WS EE++ LR+ V ++G NW +I KS PG R+ + +W N
Sbjct: 4 RIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPG----RSGKSCRLRWCN 50
>sp|P48972|MYBB_MOUSE Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1
Length = 704
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTE 380
R K KW+ EE++ LR V QFG+ +WK + P D++ +
Sbjct: 29 RCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQ 70
>sp|Q6E434|TRF1_SCHPO Telomeric DNA-binding factor trf1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=trf1 PE=1 SV=1
Length = 485
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 327 LKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILK-SNPGA-----FDERTE 380
L N ++A RR W+ EEE+AL G++ W IL+ PG R +
Sbjct: 394 LNNKRTRRVANRRS---WTKEEEEALLDGLDLVKGPRWSQILELYGPGGKKSEVLKYRNQ 450
Query: 381 VDLKDKWRNMTRY 393
V LKDK RNM +
Sbjct: 451 VQLKDKARNMKLF 463
>sp|P10244|MYBB_HUMAN Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1
Length = 700
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 331 DVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTE 380
DV + + K KW+ EE++ LR V QFG+ +WK + P D++ +
Sbjct: 21 DVPEQRDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQ 70
>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2
Length = 743
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 331 DVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKW 387
DV + R K KW+ EE++ L+ V++ G+G WK I + + RTE + +W
Sbjct: 21 DVPEPKENRVKVKWTPEEDETLKALVKKHGQGEWKTIASN----LNNRTEQQCQHRW 73
>sp|Q1H1K2|GLGB_METFK 1,4-alpha-glucan branching enzyme GlgB OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glgB
PE=3 SV=1
Length = 725
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 239 EPSVGRETNVDKPVLNPSVDAHLEPLQANQG-NRKDESCSH-QSNVPKSSLMERNSTAHA 296
E + GRE NV N S+D HL L +QG R SH VP +L E + AH
Sbjct: 572 ELAQGREWNV-----NSSLDWHLLDLHWHQGIQRLHRDLSHLYRQVP--ALHELDFDAHG 624
Query: 297 YEWDDSIDEEPS 308
+EW D D + S
Sbjct: 625 FEWIDCSDSDQS 636
>sp|Q8NA31|CCD79_HUMAN Coiled-coil domain-containing protein 79 OS=Homo sapiens GN=CCDC79
PE=2 SV=3
Length = 727
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 316 LPSPKRKAVSPLKNHDVT--KLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPG 373
L +P+R+ L N T + +RR +K ++ EE + L GV++ G +W IL S P
Sbjct: 646 LLTPRRR--QRLSNESTTPGGIKKRRIRKNFTEEEVNYLFNGVKKMG-NHWNSILWSFP- 701
Query: 374 AFDE-RTEVDLKDKWRNMTRY 393
F + R VDL K+ +T++
Sbjct: 702 -FQQGRKAVDLAHKYHKLTKH 721
>sp|Q9UUI6|RTF_SCHPO Replication termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rtf1 PE=1 SV=2
Length = 466
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392
+KK KW++E+E L+K VE+ G W LI G R + +D WR+ +
Sbjct: 254 KKKCKWTIEDEAELKKLVEKHGTS-WSLI-----GKLSNRLPMHCRDHWRDYIQ 301
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 319 PKRKAVSPLKNHDVTKLARRRKKK-------KWSLEEEDALRKGVEQFGKGNWKLI 367
P+ KAVSP K+ + ++RK+K +WS EE + +G +FGK WK +
Sbjct: 15 PRAKAVSPHKDEESMSKTKQRKRKLSDMLGPQWSKEELERFYEGYRKFGK-EWKKV 69
>sp|Q8SRR2|RIR2_ENCCU Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU06_0730 PE=3 SV=1
Length = 325
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 317 PSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGN 363
P +R + P+K HD+ K+ ++ + W++EE +L K ++ +GK N
Sbjct: 13 PKEERFVLLPIKYHDIWKMYKKAESSFWTVEEV-SLDKDIDDWGKLN 58
>sp|Q7Z3B3|KANL1_HUMAN KAT8 regulatory NSL complex subunit 1 OS=Homo sapiens GN=KANSL1
PE=1 SV=2
Length = 1105
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 47 RSIQSQLSSDGDASLSKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQ 106
R IQ QL + +LSK L NL+++R + + +TR EAA+R AA T + L
Sbjct: 315 RHIQHQLGGFLEKTLSK--LPNLESLR---PRSQLMLTRKAEAALRKAASETTTSEGLSN 369
Query: 107 VVKT 110
+K+
Sbjct: 370 FLKS 373
>sp|Q4KLN6|RIR2_RAT Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus
norvegicus GN=Rrm2 PE=2 SV=1
Length = 390
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 302 SIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEED 350
SI+EEP + N P+R V P++ HD+ ++ ++ + W+ EE D
Sbjct: 67 SIEEEPLLREN------PRRFVVFPIEYHDIWQMYKKAEASFWTAEEVD 109
>sp|P36603|RIR2_SCHPO Ribonucleoside-diphosphate reductase small chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=suc22 PE=3 SV=2
Length = 391
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 301 DSIDEEPSNQGNRFHL-------------PSPKRKAVSPLKNHDVTKLARRRKKKKWSLE 347
D++ EE +G ++L P+P R + P+K H++ + ++ + W+ E
Sbjct: 42 DNVSEEEKQEGGDYYLGKKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAE 101
Query: 348 EED 350
E D
Sbjct: 102 EID 104
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRN 389
L+ R K W+ EE L +EQ+G GNW+ I K + ++ D K+++ N
Sbjct: 65 LSVFRGKGAWTAREEIRLLDAIEQYGFGNWEDISKH----IETKSAEDAKEEYVN 115
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 5 ISRWVIEFLLRNSPS---DQLINRILAIIPISNNNNFRLKKTLLLRSIQSQLSSDGDASL 61
IS+ V+EFL +N+P + LIN+I +P S N R + LLR Q +S
Sbjct: 514 ISKIVVEFL-QNNPDAVYEDLINKIETTVPPSTINVNRFTEDSLLRHAQFVVSQ------ 566
Query: 62 SKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQVV 108
+E+ +D DE I ++ M A I A + A R+V+
Sbjct: 567 ----VESYDEAKDDDETP-IFLSPCMRALIHLAGVSLGQRRATRRVM 608
>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1
Length = 686
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 331 DVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTE 380
DV + R K KW+ EE++ L+ V +G+ +WK + P D++ +
Sbjct: 21 DVPEQRDGRCKVKWTQEEDEQLKMLVRHYGQNDWKFLASHFPNRSDQQCQ 70
>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2
Length = 751
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 343 KWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
KW+ +E+D L+K VEQ G +W LI R++ + +W+ +
Sbjct: 37 KWTRDEDDKLKKLVEQHGTDDWTLIA----SHLQNRSDFQCQHRWQKV 80
>sp|Q60561|RIR2_MESAU Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus
auratus GN=RRM2 PE=2 SV=1
Length = 386
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 302 SIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEED 350
S+++EP + N P+R V P++ HD+ K+ ++ + W+ EE D
Sbjct: 67 SVEDEPLLREN------PRRFVVFPIEYHDIWKMYKKAEASFWTAEEVD 109
>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2
Length = 752
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 343 KWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390
KW+ +E+D L+K VEQ G +W LI R++ + +W+ +
Sbjct: 37 KWTRDEDDKLKKLVEQHGTDDWTLIA----SHLQNRSDFQCQHRWQKV 80
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 5 ISRWVIEFLLRNSPS--DQLINRILAIIPISNNNNFRLKKTLLLRSIQ---SQLSS---D 56
IS+ V+EFL NS S + LIN+I +P S N R + LLR Q Q+ S
Sbjct: 508 ISKIVVEFLQSNSDSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEA 567
Query: 57 GDASLSKTILENLKAVRDLDEKEGIAI 83
GD+ L +RDL + G+ +
Sbjct: 568 GDSDEQPIFL--TPCMRDLIKLAGVTL 592
>sp|Q8BP86|SNPC4_MOUSE snRNA-activating protein complex subunit 4 OS=Mus musculus
GN=Snapc4 PE=2 SV=2
Length = 1333
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 332 VTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391
+ +L KK +W+ +EE L + +E++G G+W I P R+ KW+ +
Sbjct: 444 IRRLHFSLKKGRWNAKEEQQLIQLIEKYGVGHWARIASELP----HRSGSQCLSKWKILA 499
Query: 392 R 392
R
Sbjct: 500 R 500
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,755,477
Number of Sequences: 539616
Number of extensions: 6626939
Number of successful extensions: 16477
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 16320
Number of HSP's gapped (non-prelim): 222
length of query: 396
length of database: 191,569,459
effective HSP length: 120
effective length of query: 276
effective length of database: 126,815,539
effective search space: 35001088764
effective search space used: 35001088764
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)