Query 016046
Match_columns 396
No_of_seqs 162 out of 472
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.2 2.1E-11 4.6E-16 89.1 3.7 48 341-391 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.9 3.5E-09 7.7E-14 74.1 5.0 48 341-392 1-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 1.2E-08 2.6E-13 70.6 4.8 45 343-391 1-45 (45)
4 PLN03212 Transcription repress 98.7 2.5E-08 5.5E-13 96.5 6.2 54 337-394 21-75 (249)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.7 3.2E-08 7E-13 74.7 4.9 44 344-392 1-44 (60)
6 PLN03091 hypothetical protein; 98.5 7.6E-08 1.7E-12 99.5 5.4 55 337-394 10-64 (459)
7 KOG0048 Transcription factor, 98.4 2.5E-07 5.4E-12 88.3 4.9 52 340-394 8-59 (238)
8 PLN03212 Transcription repress 98.2 9.6E-07 2.1E-11 85.7 4.4 50 339-393 76-125 (249)
9 PLN03091 hypothetical protein; 98.1 2.4E-06 5.3E-11 88.5 4.7 49 340-393 66-114 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.9 2.2E-05 4.7E-10 60.7 5.5 49 339-390 1-53 (57)
11 KOG0048 Transcription factor, 97.5 9.9E-05 2.2E-09 70.6 4.3 50 339-393 60-109 (238)
12 KOG0457 Histone acetyltransfer 97.3 0.00025 5.4E-09 73.6 4.3 49 340-392 71-119 (438)
13 KOG0049 Transcription factor, 97.2 0.00033 7.2E-09 75.9 4.1 53 337-393 356-408 (939)
14 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00022 4.8E-09 57.0 0.5 52 341-392 1-65 (90)
15 KOG0049 Transcription factor, 96.9 0.00036 7.7E-09 75.7 1.8 53 335-391 406-458 (939)
16 KOG0051 RNA polymerase I termi 96.8 0.00092 2E-08 72.1 3.8 49 340-394 383-431 (607)
17 PF13325 MCRS_N: N-terminal re 96.6 0.00068 1.5E-08 64.4 1.1 58 337-394 69-129 (199)
18 PF13873 Myb_DNA-bind_5: Myb/S 96.6 0.003 6.5E-08 49.9 4.4 52 341-392 2-70 (78)
19 PF09111 SLIDE: SLIDE; InterP 94.9 0.036 7.8E-07 48.7 4.5 53 340-392 48-111 (118)
20 KOG1279 Chromatin remodeling f 94.8 0.031 6.8E-07 59.7 4.3 48 338-390 250-297 (506)
21 COG5114 Histone acetyltransfer 94.6 0.028 6.1E-07 57.2 3.2 49 342-394 64-112 (432)
22 COG5259 RSC8 RSC chromatin rem 93.3 0.075 1.6E-06 56.3 3.6 46 340-390 278-323 (531)
23 KOG4282 Transcription factor G 92.5 0.12 2.5E-06 51.9 3.6 53 341-393 54-115 (345)
24 COG5147 REB1 Myb superfamily p 91.6 0.091 2E-06 56.3 1.8 51 336-390 15-65 (512)
25 COG5147 REB1 Myb superfamily p 91.0 0.067 1.4E-06 57.3 0.0 50 339-394 289-338 (512)
26 PLN03142 Probable chromatin-re 90.9 0.24 5.2E-06 57.2 4.3 54 339-392 924-985 (1033)
27 PF08914 Myb_DNA-bind_2: Rap1 87.7 0.83 1.8E-05 36.3 4.0 49 341-392 2-58 (65)
28 KOG0051 RNA polymerase I termi 85.0 1 2.2E-05 49.4 4.2 51 339-393 434-509 (607)
29 PF12776 Myb_DNA-bind_3: Myb/S 84.4 0.93 2E-05 36.6 2.9 50 343-392 1-63 (96)
30 KOG2656 DNA methyltransferase 79.2 1.5 3.3E-05 45.9 2.8 50 342-392 131-182 (445)
31 COG5118 BDP1 Transcription ini 73.7 4.7 0.0001 42.5 4.6 53 335-392 359-411 (507)
32 PF08074 CHDCT2: CHDCT2 (NUC03 66.9 4 8.8E-05 38.3 2.2 31 341-371 3-33 (173)
33 KOG0384 Chromodomain-helicase 66.2 3 6.6E-05 49.1 1.5 32 340-371 1132-1163(1373)
34 KOG0050 mRNA splicing protein 65.8 3 6.4E-05 45.3 1.3 32 340-371 6-37 (617)
35 PF04504 DUF573: Protein of un 64.5 5.2 0.00011 33.9 2.3 53 340-392 3-63 (98)
36 KOG0050 mRNA splicing protein 54.3 9.3 0.0002 41.7 2.5 46 340-391 58-103 (617)
37 PF09420 Nop16: Ribosome bioge 48.9 37 0.00079 31.0 5.2 52 339-391 112-163 (164)
38 PF03540 TFIID_30kDa: Transcri 42.5 45 0.00097 25.7 4.0 30 16-46 1-30 (51)
39 PRK13923 putative spore coat p 40.6 7.8 0.00017 36.4 -0.5 52 340-393 4-58 (170)
40 PLN03162 golden-2 like transcr 39.5 76 0.0016 33.8 6.3 55 336-392 232-291 (526)
41 TIGR02894 DNA_bind_RsfA transc 39.3 15 0.00032 34.4 1.2 54 340-395 3-59 (161)
42 KOG4329 DNA-binding protein [G 33.0 59 0.0013 34.4 4.4 41 342-386 278-318 (445)
43 KOG4468 Polycomb-group transcr 31.2 68 0.0015 35.9 4.7 27 340-367 87-113 (782)
44 KOG2009 Transcription initiati 26.8 65 0.0014 35.7 3.6 51 335-390 403-453 (584)
45 KOG0514 Ankyrin repeat protein 25.9 1.2E+02 0.0026 32.3 5.2 67 61-129 191-262 (452)
46 smart00595 MADF subfamily of S 25.4 41 0.00088 26.7 1.4 24 363-391 29-52 (89)
47 KOG1194 Predicted DNA-binding 20.4 1E+02 0.0022 33.5 3.5 49 341-394 187-235 (534)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.17 E-value=2.1e-11 Score=89.09 Aligned_cols=48 Identities=33% Similarity=0.709 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhh
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~ 391 (396)
|++||++|++.|+++|.+||.++|..|+...+ .+||..||+++|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 57899999999999999999988999999832 3999999999999874
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.87 E-value=3.5e-09 Score=74.07 Aligned_cols=48 Identities=33% Similarity=0.740 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
+.+||++|++.|+.++.+||.++|..|... |.+||..+|+++|+++.+
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~----~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKE----LPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 468999999999999999997799999987 559999999999999875
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.76 E-value=1.2e-08 Score=70.56 Aligned_cols=45 Identities=36% Similarity=0.808 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhh
Q 016046 343 KWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391 (396)
Q Consensus 343 ~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~ 391 (396)
+||.+|++.|+.++.+||.++|..|... |.+||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~----~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKE----LPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhH----cCCCCHHHHHHHHHHhC
Confidence 5999999999999999998899999987 55799999999999864
No 4
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.69 E-value=2.5e-08 Score=96.51 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=47.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCC-CCCCchhHHHHHHHhhccC
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAF-DERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f-~~RT~vdLKDKWRnL~k~~ 394 (396)
...++.+||+||++.|++.|++||.++|..|+.. + .+||+.||++||.|.++.+
T Consensus 21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~----~g~gRT~KQCReRW~N~L~P~ 75 (249)
T PLN03212 21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKR----AGLLRCGKSCRLRWMNYLRPS 75 (249)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHh----hhcCCCcchHHHHHHHhhchh
Confidence 3446889999999999999999999999999976 4 4899999999999987654
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.66 E-value=3.2e-08 Score=74.68 Aligned_cols=44 Identities=34% Similarity=0.783 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 344 WSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 344 WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
||.+|++.|+.+|.+||. +|+.|... |.+||..+|++||++.++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEH----LGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHH----STTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHH----HCcCCHHHHHHHHHHHCc
Confidence 999999999999999995 99999997 557999999999999443
No 6
>PLN03091 hypothetical protein; Provisional
Probab=98.54 E-value=7.6e-08 Score=99.46 Aligned_cols=55 Identities=25% Similarity=0.501 Sum_probs=47.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.+.++++||+|||+.|++.|++||.++|..|.... -.+||+.||++||.|.++.+
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~---g~gRT~KQCRERW~NyLdP~ 64 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA---GLQRCGKSCRLRWINYLRPD 64 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhh---ccCcCcchHhHHHHhccCCc
Confidence 34567889999999999999999999999999752 24899999999999987654
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.41 E-value=2.5e-07 Score=88.31 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.+++||+|||+.|++-|++||.|+|..|.+..+ + +|++.+|+-||.|.++..
T Consensus 8 ~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g--l-~R~GKSCRlRW~NyLrP~ 59 (238)
T KOG0048|consen 8 VKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG--L-RRCGKSCRLRWTNYLRPD 59 (238)
T ss_pred cCCCCChHHHHHHHHHHHHhCCCCcchhhhhcC--C-CccchHHHHHhhcccCCC
Confidence 379999999999999999999999999999843 1 999999999999997653
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.24 E-value=9.6e-07 Score=85.71 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
-++.+||.||++.|++.+.+||. +|+.|... |.+||..+||.||.++++.
T Consensus 76 I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~----LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccc-cHHHHHhh----cCCCCHHHHHHHHHHHHhH
Confidence 45789999999999999999996 99999986 6799999999999987654
No 9
>PLN03091 hypothetical protein; Provisional
Probab=98.11 E-value=2.4e-06 Score=88.54 Aligned_cols=49 Identities=22% Similarity=0.467 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
++.+||.||++.|++.+++||. +|+.|... |.+||..+||.||..++|+
T Consensus 66 kKgpWT~EED~lLLeL~k~~Gn-KWskIAk~----LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc-chHHHHHh----cCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999997 99999986 6799999999999987654
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.92 E-value=2.2e-05 Score=60.67 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcc---hhchhhCCCCCCCC-CchhHHHHHHHh
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNW---KLILKSNPGAFDER-TEVDLKDKWRNM 390 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W---~~Il~~~~~~f~~R-T~vdLKDKWRnL 390 (396)
++|..||+||...+++||+.||.|+| +.|+..+. ..| |..+++......
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~---~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV---VDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC---CCCCCHHHHHHHHHHH
Confidence 36889999999999999999999999 99998742 245 999999765543
No 11
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.49 E-value=9.9e-05 Score=70.61 Aligned_cols=50 Identities=30% Similarity=0.510 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
-+++.||+|||+.++++..+||. +|+.|+.. |++||...+|.-|..-+|+
T Consensus 60 ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~----LPGRTDNeIKN~Wnt~lkk 109 (238)
T KOG0048|consen 60 LKRGNFSDEEEDLIIKLHALLGN-RWSLIAGR----LPGRTDNEVKNHWNTHLKK 109 (238)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-HHHHHHhh----CCCcCHHHHHHHHHHHHHH
Confidence 35899999999999999999997 89999997 7799999999999776553
No 12
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.27 E-value=0.00025 Score=73.64 Aligned_cols=49 Identities=24% Similarity=0.467 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
----||.+||=.|++|+++||.|||..|+++ ...||.-+||+.|.++.=
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GNW~dIA~h----IGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGNWQDIADH----IGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcHHHHHHH----HcccchHHHHHHHHHHHh
Confidence 3567999999999999999999999999998 458999999999998743
No 13
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.17 E-value=0.00033 Score=75.87 Aligned_cols=53 Identities=17% Similarity=0.457 Sum_probs=47.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
-.-+..+||++|+-.|+.+|++||.-.|.+|... |++|+..||++||.|.+..
T Consensus 356 Psikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~----vPnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQA----VPNRSDSQCRERYTNVLNR 408 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhCccchhhHHHh----cCCccHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999987 6799999999999997643
No 14
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.97 E-value=0.00022 Score=57.05 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHH------hCC-----C--cchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQ------FGK-----G--NWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeK------yG~-----G--~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
|..||.+|+..|+..+.. |+. + -|..|...-...-..||+.||++||.||.+
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~ 65 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK 65 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 568999999999999888 321 1 499999874211128999999999999965
No 15
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.94 E-value=0.00036 Score=75.65 Aligned_cols=53 Identities=28% Similarity=0.559 Sum_probs=45.8
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhh
Q 016046 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391 (396)
Q Consensus 335 ~~~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~ 391 (396)
.+++-|...||..|++.|+..|++||.|+|.+|+.. +.+||..|+..+-+-+.
T Consensus 406 L~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~----Lp~~t~~q~~rrR~R~~ 458 (939)
T KOG0049|consen 406 LNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAML----LPKKTSRQLRRRRLRLI 458 (939)
T ss_pred HHHhhccCceeecchHHHHHHHHHHccchHHHHHHH----ccccchhHHHHHHHHHH
Confidence 667889999999999999999999999999999986 66999988776655443
No 16
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.83 E-value=0.00092 Score=72.12 Aligned_cols=49 Identities=39% Similarity=0.730 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.++.||++|++.|...|.++|. .|+.|.+. .+|.+.+|+|+||+.++.|
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~-----lgr~P~~crd~wr~~~~~g 431 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKA-----LGRMPMDCRDRWRQYVKCG 431 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHH-----HccCcHHHHHHHHHhhccc
Confidence 7899999999999999999995 99999985 5899999999999998766
No 17
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.64 E-value=0.00068 Score=64.37 Aligned_cols=58 Identities=29% Similarity=0.429 Sum_probs=50.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhC--CCcchhchhhCCCCCC-CCCchhHHHHHHHhhccC
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFG--KGNWKLILKSNPGAFD-ERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG--~G~W~~Il~~~~~~f~-~RT~vdLKDKWRnL~k~~ 394 (396)
.-..+-+||.+|++.|..+..... ...+.+|+..|+.+|. .||+.+|.+.|+.|.+|.
T Consensus 69 ~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~ 129 (199)
T PF13325_consen 69 AIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH 129 (199)
T ss_pred cccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence 345688999999999999877764 4689999999999998 799999999999998764
No 18
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.60 E-value=0.003 Score=49.94 Aligned_cols=52 Identities=31% Similarity=0.443 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHh-----CC-----------CcchhchhhCCCCCC-CCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQF-----GK-----------GNWKLILKSNPGAFD-ERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKy-----G~-----------G~W~~Il~~~~~~f~-~RT~vdLKDKWRnL~k 392 (396)
...||.+|.+.|++.|++| |. ..|..|...+...+. .||..+|+.+|.||..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999998 31 349999999855555 8999999999999964
No 19
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.95 E-value=0.036 Score=48.72 Aligned_cols=53 Identities=32% Similarity=0.461 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CcchhchhhC----CCCCC----CCCchhHHHHHHHhhc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGK---GNWKLILKSN----PGAFD----ERTEVDLKDKWRNMTR 392 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~---G~W~~Il~~~----~~~f~----~RT~vdLKDKWRnL~k 392 (396)
+++.||.+||..|+..+.+||. |.|..|...- ...|. .||+.+|..|-..|++
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 5789999999999999999999 9999998762 11243 9999999999988865
No 20
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=94.77 E-value=0.031 Score=59.73 Aligned_cols=48 Identities=15% Similarity=0.414 Sum_probs=43.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHh
Q 016046 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390 (396)
Q Consensus 338 rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL 390 (396)
-..+..||.+|.-.|++||++||. .|.+|..+ ..+||.-||-.|+..|
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~h----Vg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADH----VGTKSQEQCILKFLRL 297 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhc----cCCCCHHHHHHHHHhc
Confidence 346889999999999999999997 99999987 5599999999999887
No 21
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.56 E-value=0.028 Score=57.21 Aligned_cols=49 Identities=27% Similarity=0.499 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 342 KKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 342 r~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
-.|+..||=.|+++.+..|.|||.+|.++ ...|+..+||+.|-.|.-.+
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIady----iGsr~kee~k~HylK~y~es 112 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADY----IGSRAKEEIKSHYLKMYDES 112 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHH----HhhhhhHHHHHHHHHHHhhc
Confidence 46999999999999999999999999987 44899999999988775433
No 22
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=93.29 E-value=0.075 Score=56.32 Aligned_cols=46 Identities=22% Similarity=0.499 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHh
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL 390 (396)
...+||.+|.-.|++||+.||. .|.+|+.+ ..++|.-||--||-+|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~H----VgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARH----VGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHH----hCCCCHHHHHHHHHcC
Confidence 4569999999999999999997 99999998 5699999999888765
No 23
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=92.48 E-value=0.12 Score=51.87 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHH----hCCCc-----chhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 341 KKKWSLEEEDALRKGVEQ----FGKGN-----WKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeK----yG~G~-----W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
...|+.+|...|++...+ |+.|+ |..|.......=..||+.+||.||.||.++
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~ 115 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK 115 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 689999999999988765 34466 999998532222379999999999999763
No 24
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=91.63 E-value=0.091 Score=56.33 Aligned_cols=51 Identities=24% Similarity=0.492 Sum_probs=44.7
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHh
Q 016046 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390 (396)
Q Consensus 336 ~~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL 390 (396)
...++...|+..|++.|..+|++||.-+|+.|...| ..||+.||+-+|-+.
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~----~~~~~kq~~~rw~~~ 65 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLL----ISSTGKQSSNRWNNH 65 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHh----cccccccccchhhhh
Confidence 345667799999999999999999999999999984 569999999999554
No 25
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=91.00 E-value=0.067 Score=57.34 Aligned_cols=50 Identities=36% Similarity=0.647 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
..+..||.+|+..|..-+.+.| |.|+.|... .+|-+.+|+|+||+.++.|
T Consensus 289 ~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~-----~~rmp~~crd~wr~~~~~g 338 (512)
T COG5147 289 EQRGKWTKEEEQELAKLVVEHG-GSWTEIGKL-----LGRMPNDCRDRWRDYVKCG 338 (512)
T ss_pred hhhccCcccccccccccccccc-chhhHhhhh-----hccCcHHHHHHHhhhcccc
Confidence 4567899999999999999999 599999975 4799999999999998876
No 26
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=90.89 E-value=0.24 Score=57.17 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhC-------CCC-CCCCCchhHHHHHHHhhc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSN-------PGA-FDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~-------~~~-f~~RT~vdLKDKWRnL~k 392 (396)
.+++.||.+|+..|+..+.+||.|+|..|+..- ++. |..||+..|+.|-.+|++
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 346679999999999999999999999996551 222 349999999999988865
No 27
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=87.68 E-value=0.83 Score=36.32 Aligned_cols=49 Identities=27% Similarity=0.486 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHHh---C---CCc--chhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQF---G---KGN--WKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKy---G---~G~--W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
|.+||.+||.+|++-|.++ | .|+ |+.+...++ ..+|-.-.+|||+.-++
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~---t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP---TRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S---SS--SHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh
Confidence 6789999999999999665 3 244 888888753 48999999999966543
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=85.01 E-value=1 Score=49.45 Aligned_cols=51 Identities=33% Similarity=0.626 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHH-------Hh------------------CCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVE-------QF------------------GKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVe-------Ky------------------G~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
+.+..||-||++.|++.|+ .| -.-+|..|... +..|+.++|+-||-.|+..
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~----~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEM----LGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHh----hcCCCcchHHHHHHHHHhh
Confidence 6899999999999999996 44 12479999984 6799999999999988653
No 29
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=84.37 E-value=0.93 Score=36.60 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHh---C----CC-----cchhchhhCCCCCC-CCCchhHHHHHHHhhc
Q 016046 343 KWSLEEEDALRKGVEQF---G----KG-----NWKLILKSNPGAFD-ERTEVDLKDKWRNMTR 392 (396)
Q Consensus 343 ~WT~EE~eaL~~GVeKy---G----~G-----~W~~Il~~~~~~f~-~RT~vdLKDKWRnL~k 392 (396)
.||+++++.|++.+... | .| .|..|...+...|. .-|..+||.||+.|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988654 2 22 37788888654444 6688999999998865
No 30
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=79.15 E-value=1.5 Score=45.92 Aligned_cols=50 Identities=28% Similarity=0.448 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcchhchhhCC-CCCC-CCCchhHHHHHHHhhc
Q 016046 342 KKWSLEEEDALRKGVEQFGKGNWKLILKSNP-GAFD-ERTEVDLKDKWRNMTR 392 (396)
Q Consensus 342 r~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~-~~f~-~RT~vdLKDKWRnL~k 392 (396)
..||.+|.+.|-+..++|-. .|--|.+.|. ..|. +||--||||||--.++
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r 182 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCR 182 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence 67999999999999999998 9999999972 2355 6999999999866543
No 31
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=73.71 E-value=4.7 Score=42.45 Aligned_cols=53 Identities=21% Similarity=0.475 Sum_probs=46.6
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 335 ~~~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
.++++..-+||.+|-+.+.+++..+|. ....|... |++|...|+|-||.+-.|
T Consensus 359 ~g~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~l----fP~R~RkqIKaKfi~Eek 411 (507)
T COG5118 359 FGKKKGALRWSKKEIEKFYKALSIWGT-DFSLISSL----FPNRERKQIKAKFIKEEK 411 (507)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHh----cCchhHHHHHHHHHHHhh
Confidence 566777899999999999999999998 99999987 569999999999987544
No 32
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.95 E-value=4 Score=38.34 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhC
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSN 371 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~ 371 (396)
..-|-..-+=.|+.||-+||.|+|.+|.++.
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~ 33 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDP 33 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCC
Confidence 3457778888999999999999999999985
No 33
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=66.18 E-value=3 Score=49.15 Aligned_cols=32 Identities=25% Similarity=0.505 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhC
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSN 371 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~ 371 (396)
.-.-|..+++..|+-||-+||.|+|..|+.+.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp 1163 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDP 1163 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCc
Confidence 45679999999999999999999999999885
No 34
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=65.75 E-value=3 Score=45.29 Aligned_cols=32 Identities=28% Similarity=0.573 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhC
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSN 371 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~ 371 (396)
+..-|+..|++.|..+|.|||...|+.|...|
T Consensus 6 kggvwrntEdeilkaav~kyg~nqws~i~sll 37 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGKNQWSRIASLL 37 (617)
T ss_pred ecceecccHHHHHHHHHHHcchHHHHHHHHHH
Confidence 46789999999999999999999999998765
No 35
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=64.50 E-value=5.2 Score=33.94 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHHHh----CCCcchhchhhC---CCCCC-CCCchhHHHHHHHhhc
Q 016046 340 KKKKWSLEEEDALRKGVEQF----GKGNWKLILKSN---PGAFD-ERTEVDLKDKWRNMTR 392 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKy----G~G~W~~Il~~~---~~~f~-~RT~vdLKDKWRnL~k 392 (396)
-.+.||+++|=.|++|+-.| |.+...++...| ...+. +=|..||.+|-|.|.+
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~ 63 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKK 63 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 46789999999999999988 754433332222 11122 3477899988888854
No 36
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=54.30 E-value=9.3 Score=41.67 Aligned_cols=46 Identities=26% Similarity=0.445 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhh
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~ 391 (396)
++--||.+|++.|+....-+-. .|..|.. .-+||+.+|-.||-+++
T Consensus 58 ~~tews~eederlLhlakl~p~-qwrtIa~-----i~gr~~~qc~eRy~~ll 103 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPT-QWRTIAD-----IMGRTSQQCLERYNNLL 103 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCC-ccchHHH-----HhhhhHHHHHHHHHHHH
Confidence 4667999999999999988886 9999997 46899999999999884
No 37
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=48.90 E-value=37 Score=31.04 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhh
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMT 391 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~ 391 (396)
++..+-|..|.+.+...|+|||. .+..+..+-.-..--.|..||+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56788999999999999999996 88888877541123689999999887654
No 38
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=42.52 E-value=45 Score=25.71 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHhhcCCCCCCchhHHHHHHH
Q 016046 16 NSPSDQLINRILAIIPISNNNNFRLKKTLLL 46 (396)
Q Consensus 16 ~~i~~~~~~~lL~~lP~~~~~~pRlkk~llL 46 (396)
|.||++++.-.|..-=+.. +.||++|.+-|
T Consensus 1 P~IPD~v~~~yL~~~G~~~-~D~rv~RLvSL 30 (51)
T PF03540_consen 1 PTIPDEVTDYYLERSGFQT-SDPRVKRLVSL 30 (51)
T ss_pred CCCCHHHHHHHHHHCCCCC-CCHhHHHHHHH
Confidence 5799999999999777766 68999998765
No 39
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=40.65 E-value=7.8 Score=36.45 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CcchhchhhCC--CCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGK-GNWKLILKSNP--GAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~-G~W~~Il~~~~--~~f~~RT~vdLKDKWRnL~k~ 393 (396)
+...||.|++..|-+-|-+|+. |. ..+. .|- ..--+||...|.+||-..+++
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~-tql~-afe~~g~~L~rt~aac~fRwNs~vrk 58 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGG-TQLK-AFEEVGDALKRTAAACGFRWNSVVRK 58 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccc-hHHH-HHHHHHHHHhhhHHHHHhHHHHHHHH
Confidence 4678999999999999988874 22 1111 110 001289999999999655553
No 40
>PLN03162 golden-2 like transcription factor; Provisional
Probab=39.51 E-value=76 Score=33.76 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=41.3
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHhCC--CcchhchhhCCCCCCCCCchhHH---HHHHHhhc
Q 016046 336 ARRRKKKKWSLEEEDALRKGVEQFGK--GNWKLILKSNPGAFDERTEVDLK---DKWRNMTR 392 (396)
Q Consensus 336 ~~rRkrr~WT~EE~eaL~~GVeKyG~--G~W~~Il~~~~~~f~~RT~vdLK---DKWRnL~k 392 (396)
+++|+|..||+|=-+.++++|++.|. -.=+.|++.-. +.+=|..++| .|||...|
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMn--V~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMG--VQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcC--CCCcCHHHHHHHHHHHHHhcc
Confidence 46678999999999999999999994 23667777633 4566666666 56776654
No 41
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.30 E-value=15 Score=34.38 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CcchhchhhCCCCC--CCCCchhHHHHHHHhhccCC
Q 016046 340 KKKKWSLEEEDALRKGVEQFGK-GNWKLILKSNPGAF--DERTEVDLKDKWRNMTRYSF 395 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~-G~W~~Il~~~~~~f--~~RT~vdLKDKWRnL~k~~~ 395 (396)
+...||.||+..|-+-|-+|=. |. .=+..|-.+- -+||+--|-=||-..+|+.|
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~--TQL~AFeEvg~~L~RTsAACGFRWNs~VRkqY 59 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGS--TQLSAFEEVGRALNRTAAACGFRWNAYVRKQY 59 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHcccHHHhcchHHHHHHHHH
Confidence 4578999999999999999821 11 1122211000 18999999999998887543
No 42
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=33.01 E-value=59 Score=34.44 Aligned_cols=41 Identities=29% Similarity=0.519 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHH
Q 016046 342 KKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDK 386 (396)
Q Consensus 342 r~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDK 386 (396)
.-||++|=.++-+|++.||+ ..-.|... .+..|+-..|-.=
T Consensus 278 ~~wsEeEcr~FEegl~~yGK-DF~lIr~n---kvrtRsvgElVey 318 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGK-DFHLIRAN---KVRTRSVGELVEY 318 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcc-cHHHHHhc---ccccchHHHHHHH
Confidence 35999999999999999998 88888865 2668888777654
No 43
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=31.18 E-value=68 Score=35.93 Aligned_cols=27 Identities=26% Similarity=0.637 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLI 367 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~I 367 (396)
.++-||-.|++.+-.|++.||. ....|
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GK-dFe~V 113 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGK-DFEKV 113 (782)
T ss_pred cccccchhhHHHHHHHHHHhcc-cHHHH
Confidence 3789999999999999999998 77777
No 44
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=26.84 E-value=65 Score=35.71 Aligned_cols=51 Identities=22% Similarity=0.468 Sum_probs=43.9
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHh
Q 016046 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390 (396)
Q Consensus 335 ~~~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL 390 (396)
..++....+||.+|-+....+...+|. +-+.|.+. |..|+..++|-|+++=
T Consensus 403 ~sk~~~~~~w~~se~e~fyka~~~~gs-~~slis~l----~p~R~rk~iK~K~~~e 453 (584)
T KOG2009|consen 403 YSKKLETDKWDASETELFYKALSERGS-DFSLISNL----FPLRDRKQIKAKFKKE 453 (584)
T ss_pred ccCccccCcccchhhHHhhhHHhhhcc-cccccccc----cccccHHHHHHHHhhh
Confidence 344556789999999999999999997 88999876 6699999999998864
No 45
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=25.92 E-value=1.2e+02 Score=32.33 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHhhhcCccccchhhHHHHHH---HHH-hh-hccCcHHHHHHHHHHHHHHHHHhcCccHHHHHHh
Q 016046 61 LSKTILENLKAVRDLDEKEGIAITRSMEAA---IRD-AA-ENTQNDDALRQVVKTYLEEAWASMGPTFLELAAA 129 (396)
Q Consensus 61 vse~~L~~le~l~e~d~~e~~~i~d~~~aA---~~~-~~-~~~~r~~A~~~~vr~~L~~awa~~GPSfLE~aA~ 129 (396)
+|+.+++.|++|.+.--+-...+...||-| |.. -| .-.+. +|--+.|+|||+ ++.+|+|-.||.+--
T Consensus 191 ls~~l~~a~~~~~~si~~p~alt~~~lk~a~~tv~~eW~~~a~~s-~a~pe~V~~~l~-~f~als~~lL~yvVN 262 (452)
T KOG0514|consen 191 LSQSLKSALKILNDSILKPLALTSQSLKSAKATVQHEWFTNSSTS-SSDPEQVEDYLA-YFEALSPPLLEYVVN 262 (452)
T ss_pred hhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhcccC-CCCHHHHHHHHH-HHHhcChHHHHHHhh
Confidence 567788888887643322224556677777 222 12 22333 555669999996 589999999999643
No 46
>smart00595 MADF subfamily of SANT domain.
Probab=25.37 E-value=41 Score=26.75 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=19.4
Q ss_pred cchhchhhCCCCCCCCCchhHHHHHHHhh
Q 016046 363 NWKLILKSNPGAFDERTEVDLKDKWRNMT 391 (396)
Q Consensus 363 ~W~~Il~~~~~~f~~RT~vdLKDKWRnL~ 391 (396)
-|..|..... -|..+|+.||++|.
T Consensus 29 aW~~Ia~~l~-----~~~~~~~~kw~~LR 52 (89)
T smart00595 29 AWEEIAEELG-----LSVEECKKRWKNLR 52 (89)
T ss_pred HHHHHHHHHC-----cCHHHHHHHHHHHH
Confidence 5888887743 39999999999984
No 47
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=20.43 E-value=1e+02 Score=33.50 Aligned_cols=49 Identities=16% Similarity=0.368 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
...||.||--.|-...+-||. +..+|... +++|+-..|..=|.++.|.-
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~----LP~rsLaSlvqyYy~~KK~~ 235 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGK-DFHKIRQA----LPHRSLASLVQYYYSWKKTR 235 (534)
T ss_pred cccchHHHHHHHHHHHHHhcc-cHHHHHHH----ccCccHHHHHHHHHHHHHHh
Confidence 457999999999999999998 99999987 56888887777666665543
Done!