Query 016046
Match_columns 396
No_of_seqs 162 out of 472
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:58:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2roh_A RTBP1, telomere binding 99.8 6.1E-22 2.1E-26 171.4 6.0 81 313-393 3-83 (122)
2 2aje_A Telomere repeat-binding 99.7 8.3E-19 2.9E-23 148.3 6.4 62 334-395 6-67 (105)
3 2juh_A Telomere binding protei 99.7 2.7E-18 9.3E-23 148.4 4.7 62 332-393 8-69 (121)
4 1x58_A Hypothetical protein 49 99.7 6.8E-18 2.3E-22 130.8 6.1 55 338-394 5-59 (62)
5 3sjm_A Telomeric repeat-bindin 99.7 3.2E-17 1.1E-21 126.8 5.9 57 337-395 7-63 (64)
6 2ckx_A NGTRF1, telomere bindin 99.7 2.1E-17 7.2E-22 134.3 4.0 53 342-394 1-53 (83)
7 1ity_A TRF1; helix-turn-helix, 99.6 2.3E-15 7.9E-20 116.9 6.4 59 335-395 4-62 (69)
8 1w0t_A Telomeric repeat bindin 99.6 2.4E-15 8.2E-20 111.2 5.9 52 340-393 1-52 (53)
9 1guu_A C-MYB, MYB proto-oncoge 99.3 9.6E-13 3.3E-17 96.4 5.7 50 340-393 2-51 (52)
10 1gvd_A MYB proto-oncogene prot 99.3 2.9E-12 1E-16 94.0 5.8 50 340-393 2-51 (52)
11 2d9a_A B-MYB, MYB-related prot 99.3 3.1E-12 1E-16 96.4 6.0 52 339-394 6-57 (60)
12 2dim_A Cell division cycle 5-l 99.2 1.4E-11 4.9E-16 95.5 6.1 52 339-394 7-58 (70)
13 1x41_A Transcriptional adaptor 99.2 1E-11 3.4E-16 94.1 4.9 52 339-394 6-57 (60)
14 2elk_A SPCC24B10.08C protein; 99.2 1.8E-11 6E-16 92.4 4.8 48 340-391 8-56 (58)
15 2cu7_A KIAA1915 protein; nucle 99.0 2.3E-10 7.9E-15 89.4 4.4 50 339-393 7-56 (72)
16 1gv2_A C-MYB, MYB proto-oncoge 99.0 4.7E-10 1.6E-14 92.4 5.9 50 340-393 3-52 (105)
17 2llk_A Cyclin-D-binding MYB-li 99.0 3.4E-10 1.2E-14 89.9 4.4 49 339-393 21-69 (73)
18 2yus_A SWI/SNF-related matrix- 99.0 5.6E-10 1.9E-14 89.6 5.2 49 337-390 14-62 (79)
19 2yum_A ZZZ3 protein, zinc fing 98.9 3.8E-10 1.3E-14 88.5 3.7 49 340-392 7-60 (75)
20 2k9n_A MYB24; R2R3 domain, DNA 98.9 9E-10 3.1E-14 91.6 5.7 50 341-394 1-50 (107)
21 3osg_A MYB21; transcription-DN 98.9 1.3E-09 4.4E-14 93.2 6.2 52 337-393 7-58 (126)
22 3zqc_A MYB3; transcription-DNA 98.9 1.6E-09 5.5E-14 93.0 6.3 49 341-393 2-50 (131)
23 2din_A Cell division cycle 5-l 98.9 8.6E-10 2.9E-14 84.6 3.8 48 340-393 8-55 (66)
24 1h8a_C AMV V-MYB, MYB transfor 98.9 1.7E-09 5.9E-14 92.2 5.9 51 339-393 25-75 (128)
25 1gv2_A C-MYB, MYB proto-oncoge 98.8 2.9E-09 9.8E-14 87.7 5.6 50 340-394 55-104 (105)
26 3osg_A MYB21; transcription-DN 98.8 4.3E-09 1.5E-13 89.9 4.9 50 339-393 60-109 (126)
27 2k9n_A MYB24; R2R3 domain, DNA 98.8 4.5E-09 1.5E-13 87.4 4.1 49 340-393 52-100 (107)
28 2cqr_A RSGI RUH-043, DNAJ homo 98.7 8.3E-09 2.8E-13 81.9 5.1 50 340-393 17-69 (73)
29 1h8a_C AMV V-MYB, MYB transfor 98.7 9.3E-09 3.2E-13 87.7 5.6 51 339-394 77-127 (128)
30 3zqc_A MYB3; transcription-DNA 98.7 9.8E-09 3.4E-13 88.1 5.6 50 340-394 53-102 (131)
31 2ltp_A Nuclear receptor corepr 98.1 2E-09 6.9E-14 87.7 0.0 50 340-394 15-64 (89)
32 1h89_C C-MYB, MYB proto-oncoge 98.7 2E-08 6.7E-13 88.5 5.9 51 339-393 56-106 (159)
33 1h89_C C-MYB, MYB proto-oncoge 98.5 7.2E-08 2.5E-12 84.9 5.4 50 340-394 109-158 (159)
34 2cjj_A Radialis; plant develop 98.5 1.1E-07 3.9E-12 78.6 4.7 48 341-392 8-58 (93)
35 2eqr_A N-COR1, N-COR, nuclear 98.3 1.1E-06 3.8E-11 66.7 5.6 53 336-393 7-59 (61)
36 1ign_A Protein (RAP1); RAP1,ye 98.2 7.9E-07 2.7E-11 84.8 4.9 52 339-394 6-62 (246)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.0 4.5E-06 1.6E-10 65.9 4.2 49 340-393 7-58 (72)
38 3hm5_A DNA methyltransferase 1 97.7 3.7E-05 1.3E-09 63.8 4.8 51 341-392 30-81 (93)
39 2iw5_B Protein corest, REST co 97.6 4.2E-05 1.4E-09 72.6 5.0 50 339-393 131-180 (235)
40 1wgx_A KIAA1903 protein; MYB D 97.5 8.6E-05 2.9E-09 59.1 4.7 48 341-392 8-58 (73)
41 2yqk_A Arginine-glutamic acid 97.1 0.001 3.5E-08 50.8 6.3 49 340-392 8-56 (63)
42 2ebi_A DNA binding protein GT- 97.1 0.00011 3.6E-09 58.7 0.7 55 339-393 2-65 (86)
43 2crg_A Metastasis associated p 97.0 0.0013 4.6E-08 51.2 6.1 53 337-393 4-56 (70)
44 1fex_A TRF2-interacting telome 96.9 0.00093 3.2E-08 50.7 4.5 49 341-392 2-58 (59)
45 4b4c_A Chromodomain-helicase-D 96.8 0.0011 3.7E-08 60.1 5.1 52 341-392 134-195 (211)
46 4iej_A DNA methyltransferase 1 96.7 0.0019 6.6E-08 53.6 5.0 51 341-392 30-81 (93)
47 2xag_B REST corepressor 1; ami 96.3 0.0027 9.2E-08 65.8 4.9 49 339-392 378-426 (482)
48 4a69_C Nuclear receptor corepr 96.0 0.0057 1.9E-07 50.3 4.2 53 337-394 39-91 (94)
49 4eef_G F-HB80.4, designed hema 96.0 0.0021 7.3E-08 51.3 1.5 44 341-388 20-66 (74)
50 1ofc_X ISWI protein; nuclear p 95.8 0.0065 2.2E-07 59.6 4.6 53 340-392 211-274 (304)
51 2xb0_X Chromo domain-containin 95.8 0.0055 1.9E-07 59.2 3.8 30 342-371 169-198 (270)
52 1irz_A ARR10-B; helix-turn-hel 95.1 0.032 1.1E-06 43.3 5.3 54 337-392 3-61 (64)
53 2y9y_A Imitation switch protei 94.5 0.018 6E-07 58.1 3.0 52 341-392 228-290 (374)
54 4b4c_A Chromodomain-helicase-D 93.6 0.058 2E-06 48.7 4.4 50 339-390 5-56 (211)
55 1ug2_A 2610100B20RIK gene prod 90.6 0.4 1.4E-05 39.8 5.4 53 336-392 28-82 (95)
56 2lr8_A CAsp8-associated protei 88.8 0.072 2.5E-06 42.1 0.0 50 339-393 12-63 (70)
57 1ign_A Protein (RAP1); RAP1,ye 88.4 0.41 1.4E-05 45.8 4.5 50 340-393 93-199 (246)
58 2xag_B REST corepressor 1; ami 76.4 0.52 1.8E-05 48.9 0.0 42 341-387 189-230 (482)
59 1ofc_X ISWI protein; nuclear p 62.0 7.6 0.00026 38.0 4.7 46 341-390 110-155 (304)
60 2i8b_A Minor nucleoprotein VP3 30.6 1.1E+02 0.0037 26.8 6.3 73 9-93 30-108 (152)
No 1
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.85 E-value=6.1e-22 Score=171.44 Aligned_cols=81 Identities=28% Similarity=0.503 Sum_probs=75.7
Q ss_pred CCCCCCCCccccCCCCCCCchhhhccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 313 RFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 313 r~~lpspkr~~vsP~k~~~~~~~~~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
.+..|+|.+.+++|+++++.++.+.||++++||.||+++|++||++||.|+|+.|+..+++.|.+||++|||||||||+|
T Consensus 3 ~~~~~~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 3 PFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 45678999999999999988888999999999999999999999999999999999998778899999999999999996
Q ss_pred c
Q 016046 393 Y 393 (396)
Q Consensus 393 ~ 393 (396)
.
T Consensus 83 ~ 83 (122)
T 2roh_A 83 T 83 (122)
T ss_dssp H
T ss_pred h
Confidence 4
No 2
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.75 E-value=8.3e-19 Score=148.31 Aligned_cols=62 Identities=34% Similarity=0.579 Sum_probs=56.0
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccCC
Q 016046 334 KLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYSF 395 (396)
Q Consensus 334 ~~~~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~~ 395 (396)
..+.++++++||+||+++|++||++||.|+|+.|+..++++|.+||++|||||||||++...
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 35688999999999999999999999999999999998888999999999999999998654
No 3
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=2.7e-18 Score=148.45 Aligned_cols=62 Identities=35% Similarity=0.639 Sum_probs=57.3
Q ss_pred chhhhccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 332 VTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 332 ~~~~~~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
.++.+.++++++||+||+++|++||++||.|+|+.|+..++..|.+||++|||||||||++.
T Consensus 8 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 8 RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999998788999999999999999974
No 4
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=6.8e-18 Score=130.76 Aligned_cols=55 Identities=31% Similarity=0.474 Sum_probs=51.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 338 rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.+.+++||+||+++|++||++||. +|++|+..|+ .|.+||.||||||||||.|..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~-f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFP-FQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSC-CCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCC-CccCcccchHHHHHHHHHhcc
Confidence 457999999999999999999999 9999999997 378999999999999999865
No 5
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.68 E-value=3.2e-17 Score=126.84 Aligned_cols=57 Identities=44% Similarity=0.904 Sum_probs=51.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccCC
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYSF 395 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~~ 395 (396)
..+++++||+|||+.|+++|++||.|+|+.|+..++ |.+||++||+|||+||+|.+.
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhccCC
Confidence 345678999999999999999999999999999976 789999999999999999874
No 6
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.67 E-value=2.1e-17 Score=134.27 Aligned_cols=53 Identities=36% Similarity=0.645 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 342 KKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 342 r~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
++||+||+++|++||++||.|+|+.|+..|+..|.+||++|||||||||+|++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999877789999999999999998743
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.57 E-value=2.3e-15 Score=116.85 Aligned_cols=59 Identities=44% Similarity=0.878 Sum_probs=53.3
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccCC
Q 016046 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYSF 395 (396)
Q Consensus 335 ~~~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~~ 395 (396)
++.++++++||+||++.|+++|++||.|+|+.|+..++ |.+||++||++||+|+++.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcCCCC
Confidence 45678899999999999999999999999999999865 559999999999999987654
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=2.4e-15 Score=111.24 Aligned_cols=52 Identities=46% Similarity=0.944 Sum_probs=48.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
++++||+||++.|+++|++||.|+|+.|+..++ |.+||++||++||+|++|+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999999999999865 5599999999999999885
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.34 E-value=9.6e-13 Score=96.44 Aligned_cols=50 Identities=34% Similarity=0.708 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
++.+||+||++.|+++|++||.++|..|+.. |.+||..||++||.++++.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANY----LPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHT----STTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH----cCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999999999999987 6799999999999998764
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.29 E-value=2.9e-12 Score=94.00 Aligned_cols=50 Identities=28% Similarity=0.577 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
++.+||+||++.|+++|++||.++|..|+.. |.+||..||++||.++++.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTT----STTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHH----cCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999999899999986 6799999999999998764
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=3.1e-12 Score=96.45 Aligned_cols=52 Identities=33% Similarity=0.657 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.++.+||+||++.|+++|++||.++|..|+.. |.+||..||++||.++++..
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASH----FPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHH----CSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH----ccCCCHHHHHHHHHHHcCCc
Confidence 46889999999999999999999999999998 67999999999999998764
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.4e-11 Score=95.52 Aligned_cols=52 Identities=23% Similarity=0.489 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.++.+||+||++.|+++|++||.++|..|+.. |.+||..||++||.++++..
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~L~p~ 58 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASL----LHRKSAKQCKARWYEWLDPS 58 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHH----STTCCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----hcCCCHHHHHHHHHHHcCCc
Confidence 46889999999999999999999999999997 56999999999999987653
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=1e-11 Score=94.13 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
..+.+||+||++.|+++|++||.++|..|+.. |.+||..||++||.+++..+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQ----MCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHH----HTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHH----hCCCCHHHHHHHHHHHccCC
Confidence 35789999999999999999999999999998 56999999999999987654
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.17 E-value=1.8e-11 Score=92.40 Aligned_cols=48 Identities=27% Similarity=0.471 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCC-CCCchhHHHHHHHhh
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFD-ERTEVDLKDKWRNMT 391 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~-~RT~vdLKDKWRnL~ 391 (396)
.+.+||++|++.|+++|++||.++|..|+.. |. +||..||++||.++.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~----~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADY----VGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHH----HCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----HCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999999999999987 66 899999999999864
No 15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.00 E-value=2.3e-10 Score=89.40 Aligned_cols=50 Identities=28% Similarity=0.573 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
.++.+||.||++.|+++|++||. +|..|+.. |.+||..|||++|.++++.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~----~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISKL----IGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHH----HSSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999998 99999996 6799999999999998654
No 16
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.98 E-value=4.7e-10 Score=92.42 Aligned_cols=50 Identities=26% Similarity=0.562 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
++++||+||++.|+++|++||.++|..|+.. |.+||+.||++||++++..
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLNP 52 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTT----STTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhh----hcCCCHHHHHHHHHhccCC
Confidence 4789999999999999999999999999986 6799999999999998654
No 17
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.97 E-value=3.4e-10 Score=89.93 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
-++.+||+||++.|+++|++||. +|+.|++. | +||..+||++|+.|.+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~----l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGAA----L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH----H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH----h-CCCHHHHHHHHHHHHHH
Confidence 35889999999999999999997 69999997 7 99999999999988764
No 18
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.96 E-value=5.6e-10 Score=89.58 Aligned_cols=49 Identities=14% Similarity=0.336 Sum_probs=44.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHh
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL 390 (396)
.+..+.+||.||++.|+++|++|| ++|..|+.. +.+||..||+.+|.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~----v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEH----VGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH----HSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH----cCCCCHHHHHHHHHHh
Confidence 344678999999999999999999 899999997 5689999999999998
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=3.8e-10 Score=88.47 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-----CcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGK-----GNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~-----G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
.+.+||.||++.|+++|++||. ++|..|+.. |.+||..||+++|.++++
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~----~~~Rt~~qcr~r~~~~l~ 60 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE----LGNRTAKQVASQVQKYFI 60 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH----HSSSCHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH----hCCCCHHHHHHHHHHHHH
Confidence 4779999999999999999996 799999997 669999999999987754
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.93 E-value=9e-10 Score=91.58 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
+++||+||++.|+++|++||.++|..|... |.+||+.||++||.|.+..+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQL----MITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHH----TTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhh----cCCCCHHHHHHHHHHHHccc
Confidence 468999999999999999999999999987 66999999999999986543
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.91 E-value=1.3e-09 Score=93.17 Aligned_cols=52 Identities=33% Similarity=0.716 Sum_probs=47.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
+..++++||+||++.|+++|++||. +|..|+.. |.+||+.||++||+|.+..
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~p 58 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAAT----FPNRNARQCRDRWKNYLAP 58 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHT----CTTCCHHHHHHHHHHHTST
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHhhhccc
Confidence 4567899999999999999999998 99999986 6799999999999998654
No 22
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.90 E-value=1.6e-09 Score=93.05 Aligned_cols=49 Identities=24% Similarity=0.438 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
+++||+||++.|+++|++||.++|..|+.. |.+||+.||++||+|.+..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~p 50 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSF----LPNRSPKQCRERWFNHLDP 50 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTS----CTTSCHHHHHHHHHHHTST
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHH----HCCCCHHHHHHHHhhccCc
Confidence 578999999999999999999999999986 6799999999999998754
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=8.6e-10 Score=84.58 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
++.+||.||++.|+++|++||. +|..|+. + .+||..||++||.++++.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~----~gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I----IGRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H----HSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c----cCcCHHHHHHHHHHHhCh
Confidence 5789999999999999999998 9999998 4 379999999999999753
No 24
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.88 E-value=1.7e-09 Score=92.23 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
.++++||+||++.|+++|++||.++|..|+.. |.+||..||++||.+++..
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH----LKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHH----SSSCCHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH----hcCCcHHHHHHHHHHhccc
Confidence 35789999999999999999999999999987 6799999999999998754
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.84 E-value=2.9e-09 Score=87.72 Aligned_cols=50 Identities=28% Similarity=0.604 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
++.+||+||++.|+.+|++||. +|..|... |++||..+|++||+++++..
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC--
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHhcc
Confidence 4789999999999999999996 99999975 77999999999999998763
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.78 E-value=4.3e-09 Score=89.89 Aligned_cols=50 Identities=26% Similarity=0.728 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
..+.+||+||++.|+++|++||. +|..|... |.+||..+||+||+++++.
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIAKF----FPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHh
Confidence 35679999999999999999995 99999985 6799999999999999754
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.75 E-value=4.5e-09 Score=87.36 Aligned_cols=49 Identities=24% Similarity=0.632 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
.+.+||+||++.|+.+|.+||. +|..|... |++||..+||+||+++++.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISKF----LKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHHH----HSSSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHHH----CCCCCHHHHHHHHHHHHhh
Confidence 4789999999999999999997 99999986 6799999999999999764
No 28
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.74 E-value=8.3e-09 Score=81.89 Aligned_cols=50 Identities=12% Similarity=0.400 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGK---GNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~---G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
.+.+||.+|+..|+.+|++||. .+|..|+.. |++||..||+.||.+|+.-
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~----vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARC----VPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGG----CSSSCHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH----cCCCCHHHHHHHHHHHHHc
Confidence 4678999999999999999994 589999997 6799999999999999753
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.73 E-value=9.3e-09 Score=87.68 Aligned_cols=51 Identities=27% Similarity=0.573 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.++.+||+||++.|+++|++||. +|..|... |++||..+||++|+++++..
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGGG----STTCCHHHHHHHHHTTTTC-
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----CCCCCHHHHHHHHHHHHhcc
Confidence 35789999999999999999996 99999986 67999999999999998763
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.73 E-value=9.8e-09 Score=88.12 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.+.+||+||++.|+++|.+||. +|+.|... |.+||..+|++||.++++..
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIAKL----IPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHTTT----STTCCHHHHHHHHHHTTGGG
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHH
Confidence 4679999999999999999995 99999985 67999999999999998754
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.14 E-value=2e-09 Score=87.71 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.+.+||.||++.|+++|++||. +|..|+.. |.+||..||+.+|.++++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~----l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARM----VGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 4789999999999999999998 89999986 67999999999999987653
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.67 E-value=2e-08 Score=88.48 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
.++.+||+||++.|+.+|++||.++|..|... |++||..+|++||.+++..
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHT----STTCCHHHHHHHHHHTTCT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHH----cCCCCHHHHHHHHHHHhCc
Confidence 35789999999999999999999899999986 6799999999999998754
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.53 E-value=7.2e-08 Score=84.88 Aligned_cols=50 Identities=28% Similarity=0.604 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
++.+||++|+..|+++|++||. +|..|... |++||..+||.+|..+++..
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHTTTCC-
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHhcc
Confidence 4789999999999999999996 99999985 77999999999999998763
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.47 E-value=1.1e-07 Score=78.59 Aligned_cols=48 Identities=17% Similarity=0.506 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQFG---KGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG---~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
..+||.||++.|++++.+|| ..+|..|+.. |.+||..+|+.+|.+|+.
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~----vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARA----VEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----STTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998 4579999998 669999999999999853
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.1e-06 Score=66.72 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=46.4
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 336 ~~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
..|+...+||++|.+.+.+|+.+||. +|..|... +.+||..||...|....|.
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~----l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASY----LERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHH----CTTSCHHHHHHHHHHHTCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHhcCC
Confidence 35667899999999999999999996 99999976 6799999999999876653
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.22 E-value=7.9e-07 Score=84.81 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCc-----chhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGN-----WKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~-----W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
..+.+||+||++.|++.|++||..+ |..|+.. +.+||..+||+||++.++..
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhh
Confidence 3577999999999999999999853 9999975 78999999999999987764
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.99 E-value=4.5e-06 Score=65.90 Aligned_cols=49 Identities=20% Similarity=0.462 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGK---GNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~---G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
....||.||++.|.+++.+|+. .+|..|+.. + +||..||+.+|..|...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~----l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE----L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----h-CCCHHHHHHHHHHHHHh
Confidence 4678999999999999999994 579999987 3 79999999999999654
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.67 E-value=3.7e-05 Score=63.76 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCC-CCCCCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNP-GAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~-~~f~~RT~vdLKDKWRnL~k 392 (396)
..+||.||++.|.+.+++||. +|..|.+.|. .-+.+||-.|||+||..+++
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999997 9999999983 12358999999999988765
No 39
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.62 E-value=4.2e-05 Score=72.55 Aligned_cols=50 Identities=18% Similarity=0.449 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
+...+||+||.+.+++|+.+||. +|..|... +.+||..|||..|.+..|.
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~----VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHH----HSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999997 99999987 6799999999999988654
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.52 E-value=8.6e-05 Score=59.07 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQFGK---GNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~---G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
...||.+|+.+|.+++..|+. ++|..|+.. +.+||..+|+.+|..|.+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~----V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAA----VGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH----TTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHH----cCCCCHHHHHHHHHHHHh
Confidence 457999999999999999986 789999997 668999999999998854
No 41
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.001 Score=50.77 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
+...||++|.+.+.+|+.+||. +|..|..++ +.+||..||..-|-...|
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKEL---LPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHS---CTTSCHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCcHHHHHHHHhcccC
Confidence 4679999999999999999998 999999852 679999999987665444
No 42
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.08 E-value=0.00011 Score=58.72 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----C-----CcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFG----K-----GNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG----~-----G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
++...||.+|+.+|+.....+. . ..|..|...-...--.||+.||++||.||.+.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4578899999999999997532 2 26999988621100179999999999999753
No 43
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.98 E-value=0.0013 Score=51.25 Aligned_cols=53 Identities=13% Similarity=0.251 Sum_probs=44.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
.|.....||++|.+.+.+|+.+||. +|..|..++ +.+||..||..-|-.-.|.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt 56 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-DFNDIRQDF---LPWKSLTSIIEYYYMWKTT 56 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTT---CSSSCHHHHHHHHHHHHTC
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCCHHHHHHHHHhhcCC
Confidence 3456789999999999999999998 899999742 6799999999876654443
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.91 E-value=0.00093 Score=50.70 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQF--------GKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKy--------G~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
|.+||.||+..|++-|.+| |.--|+.+... .+..+|-..++|||++-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~---~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS---SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS---CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh---HCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 55569999882 1569999999999998664
No 45
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.82 E-value=0.0011 Score=60.14 Aligned_cols=52 Identities=17% Similarity=0.460 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCC-----CCC-----CCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNP-----GAF-----DERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~-----~~f-----~~RT~vdLKDKWRnL~k 392 (396)
...||.+|+..|+.||.|||.|+|..|..+.. .+| ..++++.|..|-..|++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 45699999999999999999999999999742 111 25677889998766654
No 46
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.67 E-value=0.0019 Score=53.56 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCC-CCCCCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNP-GAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~-~~f~~RT~vdLKDKWRnL~k 392 (396)
-..||.||+..|.+.+++|+. +|--|.+.|. .-+..||--|||+||-.+++
T Consensus 30 ~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999997 9999999984 12458999999999876653
No 47
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.35 E-value=0.0027 Score=65.81 Aligned_cols=49 Identities=18% Similarity=0.470 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
+...+||.+|.+.+++|+.+||. +|..|... +..||..|||.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~----VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHH----HSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----hCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998 99999987 569999999999877654
No 48
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.00 E-value=0.0057 Score=50.27 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=43.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHhhccC
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNMTRYS 394 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~~ 394 (396)
.|.....||++|.+.+.+++.+||. +|..|... +.+||..+|-.-|-...|..
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~----l~~Kt~~~cV~~YY~~Kk~~ 91 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASF----LERKTVAECVLYYYLTKKNE 91 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHT----CTTCCHHHHHHHHHHHSCC-
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHH----cCCCCHHHHHHHHhccccCc
Confidence 4456789999999999999999998 99999754 67999999987765554443
No 49
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=95.96 E-value=0.0021 Score=51.31 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---cchhchhhCCCCCCCCCchhHHHHHH
Q 016046 341 KKKWSLEEEDALRKGVEQFGKG---NWKLILKSNPGAFDERTEVDLKDKWR 388 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G---~W~~Il~~~~~~f~~RT~vdLKDKWR 388 (396)
...||.+|.++|..++.+|+.+ +|.+|+.. +++||..+|+..|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~----VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQY----VKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG----SCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----cCCCCHHHHHHHHH
Confidence 5679999999999999999975 89999987 66999999997664
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.83 E-value=0.0065 Score=59.63 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---Ccchhchhh---C-CCCCC----CCCchhHHHHHHHhhc
Q 016046 340 KKKKWSLEEEDALRKGVEQFGK---GNWKLILKS---N-PGAFD----ERTEVDLKDKWRNMTR 392 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeKyG~---G~W~~Il~~---~-~~~f~----~RT~vdLKDKWRnL~k 392 (396)
+.+.||++|+..|+.++.+||. |+|..|... . ...|. .||+++|..|-..|++
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 4568999999999999999999 999999743 1 11233 9999999999998875
No 51
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.78 E-value=0.0055 Score=59.20 Aligned_cols=30 Identities=33% Similarity=0.730 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcchhchhhC
Q 016046 342 KKWSLEEEDALRKGVEQFGKGNWKLILKSN 371 (396)
Q Consensus 342 r~WT~EE~eaL~~GVeKyG~G~W~~Il~~~ 371 (396)
..|+.+|+..|+.||-+||.|+|..|..+.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 579999999999999999999999999985
No 52
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.13 E-value=0.032 Score=43.32 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=42.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCc--chhchhhCCCCCCCCCchhHHH---HHHHhhc
Q 016046 337 RRRKKKKWSLEEEDALRKGVEQFGKGN--WKLILKSNPGAFDERTEVDLKD---KWRNMTR 392 (396)
Q Consensus 337 ~rRkrr~WT~EE~eaL~~GVeKyG~G~--W~~Il~~~~~~f~~RT~vdLKD---KWRnL~k 392 (396)
.++++..||+|.-+.++++|+++|..+ |+.|++.-. ..+.|..+++. |||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999532 789988643 45889999985 4555443
No 53
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.47 E-value=0.018 Score=58.08 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CcchhchhhC-------CCC-CCCCCchhHHHHHHHhhc
Q 016046 341 KKKWSLEEEDALRKGVEQFGK---GNWKLILKSN-------PGA-FDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~---G~W~~Il~~~-------~~~-f~~RT~vdLKDKWRnL~k 392 (396)
.+.||.+|+..|+.++.+||. |+|..|...- +|. |..||+..|..|-..|++
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~ 290 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQ 290 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 568999999999999999999 9999996651 122 239999999999999875
No 54
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.59 E-value=0.058 Score=48.71 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC--CCcchhchhhCCCCCCCCCchhHHHHHHHh
Q 016046 339 RKKKKWSLEEEDALRKGVEQFG--KGNWKLILKSNPGAFDERTEVDLKDKWRNM 390 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG--~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL 390 (396)
.....||..|...|+.++.+|| .++|..|..... |.++|..++++=++.+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~--L~~Ks~~~v~~y~~~f 56 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE--LVDKSETDLRRLGELV 56 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT--CTTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc--cCCCCHHHHHHHHHHH
Confidence 3578899999999999999999 689999999854 8899999999855554
No 55
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=90.58 E-value=0.4 Score=39.83 Aligned_cols=53 Identities=15% Similarity=0.389 Sum_probs=45.9
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHhCC--CcchhchhhCCCCCCCCCchhHHHHHHHhhc
Q 016046 336 ARRRKKKKWSLEEEDALRKGVEQFGK--GNWKLILKSNPGAFDERTEVDLKDKWRNMTR 392 (396)
Q Consensus 336 ~~rRkrr~WT~EE~eaL~~GVeKyG~--G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k 392 (396)
+...+-..||.||+..++...++-|. -.|..|... +.+|++.++++||+.|++
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~----L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ----LGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH----HSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHH----HccCCHHHHHHHHHHHHH
Confidence 34456788999999999999999996 579999887 668999999999999976
No 56
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=88.83 E-value=0.072 Score=42.06 Aligned_cols=50 Identities=4% Similarity=0.290 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC--CcchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 339 RKKKKWSLEEEDALRKGVEQFGK--GNWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 339 Rkrr~WT~EE~eaL~~GVeKyG~--G~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
-+-..||.|||..++...++-|. --|+.|... + +||+.|+++||+.|++.
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~----L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAAK----L-DKNPNQVSERFQQLMKL 63 (70)
Confidence 35678999999999999999996 468888865 5 89999999999998753
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=88.40 E-value=0.41 Score=45.81 Aligned_cols=50 Identities=26% Similarity=0.399 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHH-h-----------------------------------------------------CC---C
Q 016046 340 KKKKWSLEEEDALRKGVEQ-F-----------------------------------------------------GK---G 362 (396)
Q Consensus 340 krr~WT~EE~eaL~~GVeK-y-----------------------------------------------------G~---G 362 (396)
.+.+||.+|+-.|...|++ | |+ +
T Consensus 93 iK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~ 172 (246)
T 1ign_A 93 IKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIARE 172 (246)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCCCTT
T ss_pred ccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHH
Confidence 3677999999999999998 2 11 3
Q ss_pred cchhchhhCCCCCCCCCchhHHHHHHHhhcc
Q 016046 363 NWKLILKSNPGAFDERTEVDLKDKWRNMTRY 393 (396)
Q Consensus 363 ~W~~Il~~~~~~f~~RT~vdLKDKWRnL~k~ 393 (396)
.|+.|... |++||.+..||||+.+++.
T Consensus 173 ~fk~ia~~----~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 173 FFKHFAEE----HAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp HHHHHHHH----TTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHH----CCCCChhhHHHHHHHHHhh
Confidence 79999998 5699999999999988653
No 58
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=76.40 E-value=0.52 Score=48.92 Aligned_cols=42 Identities=14% Similarity=0.386 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHH
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKW 387 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKW 387 (396)
...||++|...+.+|+.+||. +|..|... |.+||..+|-.-|
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~~----lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQM----LPDKSIASLVKFY 230 (482)
T ss_dssp -----------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHHH----cCCCCHHHHHHHh
Confidence 358999999999999999998 99999864 6788888886553
No 59
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=62.02 E-value=7.6 Score=38.03 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCcchhchhhCCCCCCCCCchhHHHHHHHh
Q 016046 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNM 390 (396)
Q Consensus 341 rr~WT~EE~eaL~~GVeKyG~G~W~~Il~~~~~~f~~RT~vdLKDKWRnL 390 (396)
-..||..+-..++.|+.+||..+|..|+.. +.+.|..+++.-...+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e----v~~Kt~eEV~~Y~~vF 155 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKD----VEGKTPEEVIEYNAVF 155 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTS----STTCCHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHH----hcCCCHHHHHHHHHHH
Confidence 456999999999999999999999999987 5589998887655444
No 60
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein, transcription, RNA binding, viral; HET: MSE; 2.00A {Zaire ebolavirus}
Probab=30.55 E-value=1.1e+02 Score=26.85 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=50.3
Q ss_pred HHHHhhc---CCCcHHHHHHHHh--hcCCCCCCchhHHHHHHHHHHHhhhccCCCCcc-cHHHHHHHHHhhhcCccccch
Q 016046 9 VIEFLLR---NSPSDQLINRILA--IIPISNNNNFRLKKTLLLRSIQSQLSSDGDASL-SKTILENLKAVRDLDEKEGIA 82 (396)
Q Consensus 9 ilefvl~---~~i~~~~~~~lL~--~lP~~~~~~pRlkk~llLR~l~~~l~~~~~~~v-se~~L~~le~l~e~d~~e~~~ 82 (396)
|+||..+ ..|.++-+.++|+ ++= +..+-|..|=-.-+++|.-++=|-. ++.+||.-..| +++
T Consensus 30 ~ae~w~~~di~~idds~LRAlLtL~av~-----~RKfskSql~~lcE~Hlr~E~LgQDQ~~~vlevYqrl---HsD---- 97 (152)
T 2i8b_A 30 TAEHWARQDIRTIEDSKLRALLTLCAVM-----TRKFSKSQLSLLCETHLRREGLGQDQAEPVLEVYQRL---HSD---- 97 (152)
T ss_dssp HHHHHHTSCCTTCCHHHHHHHHHHHHHH-----HHHSCHHHHHHHHHHHHTCTTCCGGGHHHHHHHHHHH---HTC----
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHhhhccCCcccchHHHHHHHHH---hcc----
Confidence 6889998 7788888888887 322 2233355555556778876666666 78888877764 222
Q ss_pred hhHHHHHHHHH
Q 016046 83 ITRSMEAAIRD 93 (396)
Q Consensus 83 i~d~~~aA~~~ 93 (396)
-.-+||||+|-
T Consensus 98 KGG~FEAALWQ 108 (152)
T 2i8b_A 98 KGGSFEAALWQ 108 (152)
T ss_dssp SSSHHHHHHHH
T ss_pred cCccHHHHHHh
Confidence 24589999997
Done!