BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016049
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna
Synthetase Complexed With Seryl-Adenylate
pdb|1WLE|B Chain B, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna
Synthetase Complexed With Seryl-Adenylate
Length = 501
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 153/288 (53%), Gaps = 15/288 (5%)
Query: 103 VLELYEKMLNVQKEVDRLREERNAVANKMKGKL---------EPSERQKLIEEGKNLKEG 153
++ ++++ +++++ L EE+ AV ++ + + + Q L G+ +++
Sbjct: 72 IISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQ 131
Query: 154 LVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQL 213
L L +L ++ A +PN THPDVPVG E + + VG+ F+F + H ++
Sbjct: 132 LTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGDKPAFSFQPRGHLEI 191
Query: 214 GKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSV 273
+ LDI + VSG + YYL+ +L+ GL+N+TL+++I RGFTP+T P+++R V
Sbjct: 192 AEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVV 251
Query: 274 VEKCGFQPRGANTQVYSIEGA---DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHC 330
E CG P +Q+Y+I+ + D L GTAE+ + G MD ++ LP++ S C
Sbjct: 252 FEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTC 311
Query: 331 FXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQP--EESDSYHEELIRIE 376
+ LYRVH F+K+EMF P E+S EE + ++
Sbjct: 312 Y-RAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQ 358
>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With A Seryl-Adenylate Analog
pdb|2DQ0|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With A Seryl-Adenylate Analog
pdb|2ZR2|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With Atp
pdb|2ZR2|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With Atp
pdb|2ZR3|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii
pdb|2ZR3|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii
Length = 455
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 168/331 (50%), Gaps = 30/331 (9%)
Query: 75 IDFKWIRDNKEAVXXXXXXXXXXXXLELV---LELYEKMLNVQKEVDRLREERNAVA--- 128
+D K IR+N E V ++ V L+L + KE++RLR ERN +A
Sbjct: 2 LDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEI 61
Query: 129 NKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVG-G 187
K + K EP + +L+ + + + + + LE ++ +L ++ +PN+THP VPVG
Sbjct: 62 GKRRKKGEPVD--ELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKD 119
Query: 188 EDCSIIRKTVGNPSVFN--------------------FPVKDHFQLGKALDIFDFDAAAE 227
E+ ++ + G V+ + K H L + L DF AA+
Sbjct: 120 ENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAAK 179
Query: 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ 287
VSGS+FYYL NE V+L++ LI + L +I++GFTP+ P +VR VE+
Sbjct: 180 VSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRR-FVEEGSTSFEDFEDV 238
Query: 288 VYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYR 347
+Y +E D LI TAE P+ G+H + IL LPL Y S CF ++R
Sbjct: 239 IYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFR 298
Query: 348 VHQFSKLEMFVFCQPEESDSYHEELIRIEED 378
VHQF K+E FV+ +PEES +HE++IR E+
Sbjct: 299 VHQFHKVEQFVYSRPEESWEWHEKIIRNAEE 329
>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase
From Thermus Thermophilus At 2.5 Angstroms Resolution
pdb|1SRY|B Chain B, Refined Crystal Structure Of The Seryl-Trna Synthetase
From Thermus Thermophilus At 2.5 Angstroms Resolution
pdb|1SER|A Chain A, The 2.9 Angstroms Crystal Structure Of T. Thermophilus
Seryl-Trna Synthetase Complexed With Trna Ser
pdb|1SER|B Chain B, The 2.9 Angstroms Crystal Structure Of T. Thermophilus
Seryl-Trna Synthetase Complexed With Trna Ser
pdb|1SES|A Chain A, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SES|B Chain B, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SET|A Chain A, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
pdb|1SET|B Chain B, Crystal Structures At 2.5 Angstroms Resolution Of
Seryl-Trna Synthetase Complexed With Two Different
Analogues Of Seryl-Adenylate
Length = 421
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 132/268 (49%), Gaps = 5/268 (1%)
Query: 113 VQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEA 172
++K + ++ ERN VA ++ K P E++ LI GK L E LEE L + L+
Sbjct: 40 LKKRLQEVQTERNQVAKRVP-KAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98
Query: 173 QCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSK 232
+P P PVGGE+ + K VG P F+FP DH L + ++ ++VSGS+
Sbjct: 99 LQVPLPPWPGAPVGGEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSR 157
Query: 233 FYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE 292
Y LK + + E+ L+ + + + +RGF P+T P R G P QV++I
Sbjct: 158 SYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFP-AYRDQVWAIA 216
Query: 293 GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFS 352
D L GTAE+ + +H IL LPL+YA ++ F L RVHQF
Sbjct: 217 ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFH 276
Query: 353 KLEMFVFCQP--EESDSYHEELIRIEED 378
K+E +V + E SD +EL+ E+
Sbjct: 277 KVEQYVLTEASLEASDRAFQELLENAEE 304
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298
pdb|2DQ3|B Chain B, Crystal Structure Of Aq_298
Length = 425
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 146/278 (52%), Gaps = 3/278 (1%)
Query: 103 VLELYEKMLNVQKEVDRLREERNAVANKM-KGKLEPSERQKLIEEGKNLKEGLVTLEEDL 161
VLEL ++ + K ++ LR ERN ++ ++ K K E + ++ K LKE + LEE+L
Sbjct: 32 VLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEEL 91
Query: 162 VKLTDELQQEAQCIPNMTHPDVPVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIF 220
K+ +EL+ IPN+ HP VPVG E ++ + G P F+F K H+++G+ L I
Sbjct: 92 RKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGIL 151
Query: 221 DFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQ 280
DF A++SGS+F + LE LIN+ L K+G+ + P +V+ ++ G
Sbjct: 152 DFKRGAKLSGSRFTVIAGWGARLERALINFXLDLHTKKGYKEICPPHLVKPEILIGTGQL 211
Query: 281 PRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXX 340
P+ +Y E + LI TAE+P+ ++ + IL E LP+ A++ C+
Sbjct: 212 PK-FEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGK 270
Query: 341 XXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEED 378
+ R HQF K+E+ P+ S E+L++ E+
Sbjct: 271 DIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEE 308
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
pdb|3ERR|B Chain B, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
Length = 536
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 4/231 (1%)
Query: 150 LKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKD 209
L+ L LE+D +L+ +P P PVGGE+ + K VG P F+FP D
Sbjct: 185 LRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEEANREIKRVGGPPEFSFPPLD 244
Query: 210 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIV 269
H L + ++ ++VSGS+ Y LK + + E+ L+ + + + +RGF P+T P
Sbjct: 245 HVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYA 303
Query: 270 RSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSH 329
R G P QV++I D L GTAE+ + +H IL LPL+YA ++
Sbjct: 304 REKAFLGTGHFP-AYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAP 362
Query: 330 CFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQP--EESDSYHEELIRIEED 378
F L RVHQF K+E +V + E SD +EL+ E+
Sbjct: 363 AFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEE 413
>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|C Chain C, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|D Chain D, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|E Chain E, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|F Chain F, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
Length = 522
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 118/254 (46%), Gaps = 38/254 (14%)
Query: 150 LKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGE------------DCSIIRKTV 197
+ E ++ + + +KL E + + I N+ HP VP+ + DC++ +K
Sbjct: 110 IDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWGDCTVRKKY- 168
Query: 198 GNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIK 257
H L +D F+ + A V+GS+ Y+LK V LE LI + L +
Sbjct: 169 -----------SHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGS 217
Query: 258 RGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA-----------DQCLIGTAEIPV 306
RG+ P+ TP +R V+++ Q + ++Y + G ++ LI T+E P+
Sbjct: 218 RGYIPIYTPFFMRKEVMQEVA-QLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPI 276
Query: 307 GGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESD 366
+H D L LP+KYA S CF ++RVHQF K+E FV+ P ++
Sbjct: 277 AALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNK 336
Query: 367 SYH--EELIRIEED 378
S+ EE+I E+
Sbjct: 337 SWEMFEEMITTAEE 350
>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase
pdb|3LSQ|B Chain B, Trypanosoma Brucei Seryl-Trna Synthetase
pdb|3LSS|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase In Complex With
Atp
pdb|3LSS|B Chain B, Trypanosoma Brucei Seryl-Trna Synthetase In Complex With
Atp
Length = 484
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 121/244 (49%), Gaps = 10/244 (4%)
Query: 142 KLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGG--EDCSIIRKTVGN 199
+L + K+L + + L ++ +L +E + + N+ H VP+ E + + +T GN
Sbjct: 108 QLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGN 167
Query: 200 PSVFNFPVKDHFQLGKALDIFDFD-AAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKR 258
+ +H + + L + D A ++G + Y LK V L++ L++++L ++KR
Sbjct: 168 TT--KRAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKR 225
Query: 259 GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI--EGADQCLIGTAEIPVGGIHMDSILS 316
G+TP P + V+ + Q + ++Y + +G + LI T+E+P+ H +
Sbjct: 226 GYTPFYPPFFLNRDVMGEVA-QLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFT 284
Query: 317 ESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYH--EELIR 374
E PLKYA S CF ++RVHQF K+E FV C P + +S+ E++I
Sbjct: 285 ELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMIT 344
Query: 375 IEED 378
E+
Sbjct: 345 TSEE 348
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
Albicans
Length = 485
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 131/293 (44%), Gaps = 26/293 (8%)
Query: 100 LELVLELYEKMLN-VQKEV-DRLREERNA---VANKMKGKLEPSER-QKLIEEGKNLKEG 153
L L+ + K LN VQKE+ R + + +A +A K K E E +K E KNL+
Sbjct: 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
Query: 154 LVTL----EEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKD 209
+ + E +V DE E + P + I G P+ +
Sbjct: 105 INQVGNIVHESVVDSQDEENNE------LVRTWTPENYKKPEQIAAATGAPAKLS----- 153
Query: 210 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIV 269
H ++ LD +D + + G + Y+L+N V L LIN+ LS + +G+ PL P ++
Sbjct: 154 HHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMM 213
Query: 270 RSSVVEKCGFQPRGANTQVYS-IEGADQ-CLIGTAEIPVGGIHMDSILSE--SLLPLKYA 325
V+ K Q + ++Y I+G D+ LI T+E P+ H LP++YA
Sbjct: 214 NKEVMAKTA-QLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYA 272
Query: 326 AFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEED 378
+S CF ++RVH F K+E FV +PE+S + +I E+
Sbjct: 273 GYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEE 325
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
Candida Albicans
Length = 485
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 26/293 (8%)
Query: 100 LELVLELYEKMLN-VQKEV-DRLREERNA---VANKMKGKLEPSER-QKLIEEGKNLKEG 153
L L+ + K LN VQKE+ R + + +A +A K K E E +K E KNL+
Sbjct: 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
Query: 154 LVTL----EEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKD 209
+ + E +V DE E + P + I G P+ +
Sbjct: 105 INQVGNIVHESVVDSQDEENNE------LVRTWTPENYKKPEQIAAATGAPAKLS----- 153
Query: 210 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIV 269
H ++ LD +D + + G + Y+L+N V L LIN+ L + +G+ PL P ++
Sbjct: 154 HHEVLLRLDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLLFLSSKGYVPLQAPVMM 213
Query: 270 RSSVVEKCGFQPRGANTQVYS-IEGADQ-CLIGTAEIPVGGIHMDSILSE--SLLPLKYA 325
V+ K Q + ++Y I+G D+ LI T+E P+ H LP++YA
Sbjct: 214 NKEVMAKTA-QLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYA 272
Query: 326 AFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEED 378
+S CF ++RVH F K+E FV +PE+S + +I E+
Sbjct: 273 GYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEE 325
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 9/145 (6%)
Query: 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ 287
+S ++L N A + + L + K GF + TP I + ++ EK G A+
Sbjct: 52 LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYAD-D 110
Query: 288 VYSIEGADQCL--IGTAEIPVGG---IHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXX 342
++ +E D+ G + G I S + LPL+++ FS
Sbjct: 111 MFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPL---HRNEASGAL 167
Query: 343 XXLYRVHQFSKLEMFVFCQPEESDS 367
L R+ +F + + +FC P + S
Sbjct: 168 SGLTRLRKFHQDDGHIFCTPSQVKS 192
>pdb|2JIX|A Chain A, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|G Chain G, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|L Chain L, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
Length = 214
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 174 CIPNMTHPDVPVGGEDCSI-IRKTVGNPSVFNFPVKD 209
C+ + T+P P G+ + I++TV PSVF FP D
Sbjct: 88 CLQHNTYP--PTFGQGTKVEIKRTVAAPSVFIFPPSD 122
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE---PSERQKLI----------EEG 147
+L + L K++ +Q+++D +E ++ KM LE +E +KL EE
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN-LEITYSTETEKLRSDVERLRMSEEEA 979
Query: 148 KNLKEGLVTLEEDLVKLTDELQQ 170
KN +++L+E++ KL EL Q
Sbjct: 980 KNATNRVLSLQEEIAKLRKELHQ 1002
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,121,386
Number of Sequences: 62578
Number of extensions: 394603
Number of successful extensions: 1369
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 18
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)