BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016049
(396 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q73KB2|SYS_TREDE Serine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=serS PE=3 SV=1
Length = 422
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/317 (48%), Positives = 213/317 (67%), Gaps = 1/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D+K+I++N EAV NI+NR+ NA+ + +ELY+K + + L+++RN + MK K
Sbjct: 2 LDYKFIKENVEAVKQNIKNRHMNADADKAVELYDKRTALVTSLQNLQKDRNDNSQSMKQK 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIR 194
L P ERQKL+++GK +KE + +E +L + L + IPNM HP+ PVG ED +
Sbjct: 62 LSPEERQKLVDQGKAIKEKIAQVEAELAEAEKALHEAVSKIPNMAHPEAPVGKEDSDNLE 121
Query: 195 -KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
K G F+F KDH QLG+ LD+ DF+A +VSG KFY+LKNEAV LE L + L+
Sbjct: 122 VKRCGTVPKFDFEPKDHVQLGQDLDLIDFEAGTKVSGVKFYFLKNEAVFLEQALTMYGLN 181
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ K GF P TP+I + ++ GF PRG + VYS+EG CL+ TAEI +GG H D
Sbjct: 182 ILRKHGFKPFITPDIAKEEILYGIGFNPRGEESNVYSLEGEGTCLVATAEITLGGYHSDE 241
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
I+ + LPLKY SHCFR EAGAAG ++GLYRVHQFSKLEMFV+C PEESD+ HEEL
Sbjct: 242 IIKKESLPLKYCGLSHCFRREAGAAGQFSKGLYRVHQFSKLEMFVYCTPEESDALHEELR 301
Query: 374 RIEEDLYSSLGLHFKLL 390
IEE++++ LG+ F+++
Sbjct: 302 LIEEEIFNGLGIPFRVV 318
>sp|B2S3N6|SYS_TREPS Serine--tRNA ligase OS=Treponema pallidum subsp. pallidum (strain
SS14) GN=serS PE=3 SV=1
Length = 426
Score = 284 bits (727), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 136/317 (42%), Positives = 201/317 (63%), Gaps = 1/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D+++IR+N +AV N++ RN +A+++ ++ LY++ + + E+ L+ RN A MK
Sbjct: 2 LDYRFIRENVDAVKENVKVRNVHADVDAIVHLYDQRVKLLAELQELQRARNENAQTMKSS 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIR 194
L+ R +E G+ LK+ + E LV+++D+L Q +PNMTH P G D +
Sbjct: 62 LDALARSACVETGRALKDRIAHSERLLVQISDQLLSATQALPNMTHMCTPHGRSDSDNLE 121
Query: 195 -KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
K G P F+F +DH +L + LDI DF+A +VSG KFYYLK E V+LE LI + L
Sbjct: 122 IKRCGVPPCFSFSPRDHVELARLLDIVDFEAGKKVSGIKFYYLKREGVLLEQALIMFGLQ 181
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ +RGF P TP+I R +V GF PRG+ + +Y IEG +CL+ TAEI +G H
Sbjct: 182 FLQERGFVPFLTPDIAREGMVCGLGFNPRGSGSNIYRIEGEHRCLVATAEITLGAYHAGE 241
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
+L E LP YA SHCFR EAGAAG +RGLYRVHQF+KLEMF +C P +S+ HE L
Sbjct: 242 VLEERSLPRLYAGLSHCFRKEAGAAGQFSRGLYRVHQFTKLEMFAYCTPSDSECLHERLR 301
Query: 374 RIEEDLYSSLGLHFKLL 390
+EE+++++L + F+++
Sbjct: 302 SLEEEIFTALEIPFRVV 318
>sp|O83653|SYS_TREPA Serine--tRNA ligase OS=Treponema pallidum (strain Nichols) GN=serS
PE=3 SV=1
Length = 426
Score = 284 bits (727), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 136/317 (42%), Positives = 201/317 (63%), Gaps = 1/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D+++IR+N +AV N++ RN +A+++ ++ LY++ + + E+ L+ RN A MK
Sbjct: 2 LDYRFIRENVDAVKENVKVRNVHADVDAIVHLYDQRVKLLAELQELQRARNENAQTMKSS 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIR 194
L+ R +E G+ LK+ + E LV+++D+L Q +PNMTH P G D +
Sbjct: 62 LDALARSACVETGRALKDRIAHSERLLVQISDQLLSATQALPNMTHMCTPHGRSDSDNLE 121
Query: 195 -KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
K G P F+F +DH +L + LDI DF+A +VSG KFYYLK E V+LE LI + L
Sbjct: 122 IKRCGVPPCFSFSPRDHVELARLLDIVDFEAGKKVSGIKFYYLKREGVLLEQALIMFGLQ 181
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ +RGF P TP+I R +V GF PRG+ + +Y IEG +CL+ TAEI +G H
Sbjct: 182 FLQERGFVPFLTPDIAREGMVCGLGFNPRGSGSNIYRIEGEHRCLVATAEITLGAYHAGE 241
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
+L E LP YA SHCFR EAGAAG +RGLYRVHQF+KLEMF +C P +S+ HE L
Sbjct: 242 VLEERSLPRLYAGLSHCFRKEAGAAGQFSRGLYRVHQFTKLEMFAYCTPSDSECLHERLR 301
Query: 374 RIEEDLYSSLGLHFKLL 390
+EE+++++L + F+++
Sbjct: 302 SLEEEIFTALEIPFRVV 318
>sp|Q1AX26|SYS_RUBXD Serine--tRNA ligase OS=Rubrobacter xylanophilus (strain DSM 9941 /
NBRC 16129) GN=serS PE=3 SV=1
Length = 424
Score = 284 bits (727), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 138/317 (43%), Positives = 208/317 (65%), Gaps = 1/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D ++IR+N EAV N R+R A+++LV+EL ++ + +E++ LR +N +A + +
Sbjct: 2 LDLRYIRENAEAVKKNCRDRGVEADVDLVVELADRRSALIRELEGLRARQNQLAKAVAKE 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIR 194
+ R +LIEE + LK + EE+L + + L +E IPNMTHP+ PVG +D +
Sbjct: 62 RDERSRGRLIEESRELKGLIPRREEELRGVEERLAEEQLKIPNMTHPEAPVGRDDSENVE 121
Query: 195 -KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+ G F F KDH +LG+AL I DFDA A+ +GSKFY+L+ EAV+LE+GL+ + L
Sbjct: 122 IRRWGEAPEFGFEPKDHVELGEALGIIDFDAGAKTTGSKFYFLRGEAVLLELGLVRFALD 181
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ RG+ TP++ R ++ GF PRG TQ+YS+E D LI TAEI + G +D
Sbjct: 182 LLAGRGYELAMTPDLARDRMLLGTGFVPRGPETQIYSVENTDLSLIATAEITLAGQLVDE 241
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
I++E LP ++A SHCFRTEAGA G A+RGLYRVHQF+K+EMF F PE+S HEE++
Sbjct: 242 IVAEESLPRRFAGLSHCFRTEAGAHGRASRGLYRVHQFTKVEMFAFTTPEQSGEMHEEML 301
Query: 374 RIEEDLYSSLGLHFKLL 390
IEE+++ +L + ++++
Sbjct: 302 SIEEEIFRTLEIPYRVV 318
>sp|B5RL50|SYS_BORDL Serine--tRNA ligase OS=Borrelia duttonii (strain Ly) GN=serS PE=3
SV=1
Length = 424
Score = 282 bits (721), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 143/296 (48%), Positives = 194/296 (65%), Gaps = 2/296 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IRDN E V NI+NR L+L++ ++ + ++ L RN AN MK
Sbjct: 2 LDLKFIRDNLELVRENIKNRGLKLELDLLISFDDERRKLITKIGELNALRNENANAMKDN 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVG-GEDCSII 193
++ S R LIE+GK LK ++ LEE L LT L E + IPN++ PDVPVG ED +++
Sbjct: 62 IDDSSRHYLIEKGKALKAEIMDLEERLGYLTSRLLVEHKRIPNISAPDVPVGVSEDENVV 121
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
K GN F+F KDH ++G LD+FDF+ A EVSG+KFYYLKNEAV LE+ +IN+ S
Sbjct: 122 LKVSGNIPKFDFKPKDHLEIGIHLDLFDFEKAREVSGNKFYYLKNEAVFLELAMINFAFS 181
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
++ +GF TP++ R +V+ GF PRGA + +Y IE D+ L+GTAEI +GG + ++
Sbjct: 182 KLKAKGFDLFITPDVAREFIVDGIGFNPRGAESNIYKIEDTDKYLVGTAEITLGGYYYNT 241
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYH 369
IL PLK A SHCFR EAGAAG ++GLYRVHQFSK+EMF FC+ E+SD H
Sbjct: 242 ILDLK-SPLKMAGLSHCFRKEAGAAGQFSKGLYRVHQFSKVEMFCFCRSEDSDRIH 296
>sp|B5RR43|SYS_BORRA Serine--tRNA ligase OS=Borrelia recurrentis (strain A1) GN=serS
PE=3 SV=1
Length = 424
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/296 (48%), Positives = 193/296 (65%), Gaps = 2/296 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IRDN E V NI+NR L+L++ ++ + ++ L RN AN MK
Sbjct: 2 LDLKFIRDNLELVRENIKNRGLKLELDLLISFDDERRKLITKIGELNALRNENANAMKDN 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVG-GEDCSII 193
+ S R LIE+GK LK ++ LEE L LT L E + IPN++ PDVPVG ED +++
Sbjct: 62 IGDSSRHYLIEKGKALKAEIMDLEERLGYLTSRLLVEHKRIPNISAPDVPVGVSEDENVV 121
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
K GN F+F KDH ++G LD+FDF+ A EVSG+KFYYLKNEAV LE+ +IN+ S
Sbjct: 122 LKVSGNIPKFDFKPKDHLEIGIHLDLFDFEKAREVSGNKFYYLKNEAVFLELAMINFAFS 181
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
++ +GF TP++ R +V+ GF PRGA + +Y IE D+ L+GTAEI +GG + ++
Sbjct: 182 KLKAKGFDLFITPDVAREFIVDGIGFNPRGAESNIYKIEDTDKYLVGTAEITLGGYYYNT 241
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYH 369
IL PLK A SHCFR EAGAAG ++GLYRVHQFSK+EMF FC+ E+SD H
Sbjct: 242 ILDLK-SPLKMAGLSHCFRKEAGAAGQFSKGLYRVHQFSKVEMFCFCRSEDSDRIH 296
>sp|Q662D8|SYS_BORGA Serine--tRNA ligase OS=Borrelia garinii (strain PBi) GN=serS PE=3
SV=1
Length = 425
Score = 277 bits (709), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 212/318 (66%), Gaps = 4/318 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IRDN + V +I+ R +++ ++ L +K + ++ L +RN ++KM+
Sbjct: 2 LDLKFIRDNLDLVKKSIKARGLVLDIDKLVYLDDKRKKIITQIGELNAKRNENSSKMREN 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGG--EDCSI 192
L+ + L+E GK LK+ L+ LEE+L K++ + E + +PN+ PDVP+G ED
Sbjct: 62 LDNVFKSSLMETGKILKKQLIDLEEELKKISFDFDLENKRVPNILSPDVPIGNSEEDNFE 121
Query: 193 IRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
I+K VG F+F KDH +LG+ LD+ DFD A EVSGSKFYYLKNEAV LE+ LIN++L
Sbjct: 122 IKK-VGVVPKFDFKPKDHLELGRDLDLLDFDRAREVSGSKFYYLKNEAVFLEIALINFSL 180
Query: 253 SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
+++ ++GF TP++ R +V+ GF PRG + +Y IE D+ L+GT+EI +GG + +
Sbjct: 181 NKLREKGFDVFITPDVAREFIVDGIGFNPRGDESNIYKIESTDKYLVGTSEITLGGYYYN 240
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
I+ + LP+K A FSHCFR EAGA G ++GLYRVHQFSK+EMF FC+ EES H+E
Sbjct: 241 KIIDLT-LPIKMAGFSHCFRKEAGAYGQLSKGLYRVHQFSKVEMFCFCKAEESQVIHDEF 299
Query: 373 IRIEEDLYSSLGLHFKLL 390
+ I+E +++ L + +++L
Sbjct: 300 LSIQEQIFTELEIPYRVL 317
>sp|Q0SNT6|SYS_BORAP Serine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=serS PE=3
SV=1
Length = 425
Score = 275 bits (704), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 212/318 (66%), Gaps = 4/318 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IRDN + V +I+ R +++ ++ L +K + ++ L +RN ++KM+
Sbjct: 2 LDLKFIRDNLDLVKRSIKARGLVLDIDKLIYLDDKRKKIITKIGELNAKRNENSSKMREN 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGG--EDCSI 192
L+ + LIE GK LK+ L+ LEE+L +++ + E + +PN+ PDVP+G ED
Sbjct: 62 LDKVLKISLIETGKILKKQLIDLEEELERVSFDFDLENKRVPNILSPDVPIGNSEEDNFE 121
Query: 193 IRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
I+K VG F+F KDH +LG+ LD+ DFD A EVSGSKFYYLKNEAV LE+ LIN++L
Sbjct: 122 IKK-VGIIPRFDFKPKDHLELGRDLDLLDFDRAREVSGSKFYYLKNEAVFLEIALINFSL 180
Query: 253 SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
+++ ++GF TP++ R +V+ GF PRG + +Y IE D+ L+GT+EI +GG + +
Sbjct: 181 NKLREKGFNVFITPDVAREFIVDGIGFNPRGNESNIYKIEDTDKYLVGTSEITLGGYYYN 240
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
I+ + LP+K A FSHCFR EAGA G ++GLYRVHQFSK+EMF FC+ EES H+E
Sbjct: 241 KIIDLT-LPIKMAGFSHCFRKEAGAYGQLSKGLYRVHQFSKVEMFCFCKAEESSIIHDEF 299
Query: 373 IRIEEDLYSSLGLHFKLL 390
+ I+E +++ L + +++L
Sbjct: 300 LSIQEQIFTELEIPYRVL 317
>sp|B7J1F4|SYS_BORBZ Serine--tRNA ligase OS=Borrelia burgdorferi (strain ZS7) GN=serS
PE=3 SV=1
Length = 425
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 210/317 (66%), Gaps = 2/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IRDN + V +I+ R +++ ++ L +K + ++ L +RN ++KM+
Sbjct: 2 LDLKFIRDNLDLVKRSIKARGLVLDIDKLIYLDDKRKKLITKIGELNAKRNENSSKMQEN 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGG-EDCSII 193
L+ + LIE GK LK+ L+ LEE+L +++ + E + +PN+ PDVP+G E+ +
Sbjct: 62 LDKVLKISLIETGKILKKQLIDLEEELERVSVDFDLENKKVPNILSPDVPIGSSEEDNFE 121
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
K VG F+F KDH +LG+ LD+ DFD A E+SGSKFYYLKNEAV LE+ LIN++L+
Sbjct: 122 IKRVGVVPQFDFKPKDHLELGRDLDLLDFDRAREISGSKFYYLKNEAVFLEIALINFSLN 181
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
++ +GF TP++ R +V+ GF PRG + +Y IE D+ L+GT+EI +GG + +
Sbjct: 182 KLRDKGFDVFITPDVAREFIVDGIGFNPRGNESNIYKIEDTDKYLVGTSEITLGGYYYNK 241
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
I+ + LP++ A FSHCFR EAGA G ++GLYRVHQFSK+EMF FC+ EES H+E +
Sbjct: 242 IIDLT-LPIRMAGFSHCFRKEAGAYGQLSKGLYRVHQFSKVEMFCFCKAEESGVIHDEFL 300
Query: 374 RIEEDLYSSLGLHFKLL 390
I+E +++ L + +++L
Sbjct: 301 SIQEQIFTELEIPYRVL 317
>sp|O51244|SYS_BORBU Serine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=serS PE=3 SV=1
Length = 425
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 210/317 (66%), Gaps = 2/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IRDN + V +I+ R +++ ++ L +K + ++ L +RN ++KM+
Sbjct: 2 LDLKFIRDNLDLVKRSIKARGLVLDIDKLIYLDDKRKKLITKIGELNAKRNENSSKMQEN 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGG-EDCSII 193
L+ + LIE GK LK+ L+ LEE+L +++ + E + +PN+ PDVP+G E+ +
Sbjct: 62 LDKVLKISLIETGKILKKQLIDLEEELERVSVDFDLENKKVPNILSPDVPIGSSEEDNFE 121
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
K VG F+F KDH +LG+ LD+ DFD A E+SGSKFYYLKNEAV LE+ LIN++L+
Sbjct: 122 IKRVGVVPQFDFKPKDHLELGRDLDLLDFDRAREISGSKFYYLKNEAVFLEIALINFSLN 181
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
++ +GF TP++ R +V+ GF PRG + +Y IE D+ L+GT+EI +GG + +
Sbjct: 182 KLRDKGFDVFITPDVAREFIVDGIGFNPRGNESNIYKIEDTDKYLVGTSEITLGGYYYNK 241
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
I+ + LP++ A FSHCFR EAGA G ++GLYRVHQFSK+EMF FC+ EES H+E +
Sbjct: 242 IIDLT-LPIRMAGFSHCFRKEAGAYGQLSKGLYRVHQFSKVEMFCFCKAEESGVIHDEFL 300
Query: 374 RIEEDLYSSLGLHFKLL 390
I+E +++ L + +++L
Sbjct: 301 SIQEQIFTELEIPYRVL 317
>sp|B8E0R9|SYS_DICTD Serine--tRNA ligase OS=Dictyoglomus turgidum (strain Z-1310 / DSM
6724) GN=serS PE=3 SV=1
Length = 425
Score = 261 bits (668), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 194/320 (60%), Gaps = 5/320 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRN---SNANLELVLELYEKMLNVQKEVDRLREERNAVANKM 131
ID K +R+N E + NI RN +++ ++EL K ++QKE+D LR +RN ++ ++
Sbjct: 2 IDIKILRENPEIMKENIILRNLDPQKYDVDYIIELDAKRRSLQKELDNLRAQRNKISQEI 61
Query: 132 KGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCS 191
GK + ER+KLI+E K LKE + L ++ + EL +PN P P G ++
Sbjct: 62 -GKHQGEEREKLIKEAKILKEKIEELAKEYDNVEKELFSRLWQLPNFLSPKAPRGKDEKD 120
Query: 192 IIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINW 250
+ K G FNF KDH L D+ DF+ ++V+GS FYYLKNEAV+LE L
Sbjct: 121 NVEIKKWGEIKTFNFTPKDHLDLALLNDLVDFERGSKVTGSNFYYLKNEAVLLEFALFRL 180
Query: 251 TLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIH 310
+ ++ GF TP++ R +++ GFQPRG Q+Y +E D LI TAEI +GG H
Sbjct: 181 VIDTLLPEGFKLFITPDLARMEIIDGIGFQPRGPEAQIYRVEDTDLGLIATAEITLGGYH 240
Query: 311 MDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHE 370
D IL E LPLKY FSHCFRTEAGA G RGLYRVHQFSK E+F+ C+PE+S+ HE
Sbjct: 241 KDEILDELDLPLKYLGFSHCFRTEAGAYGRYNRGLYRVHQFSKAEIFIICRPEDSEEMHE 300
Query: 371 ELIRIEEDLYSSLGLHFKLL 390
++ +EE ++ L + +++L
Sbjct: 301 YILGLEEKIFQKLEIPYRVL 320
>sp|Q7UXX6|SYS_RHOBA Serine--tRNA ligase OS=Rhodopirellula baltica (strain SH1) GN=serS
PE=3 SV=2
Length = 426
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 201/317 (63%), Gaps = 1/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+I N + V+ N R + +++ + L + ++ K+ + L + N V+ ++K
Sbjct: 2 LDRKFILQNAQLVAENSAKRGVSVDVDAICRLEAERMDALKQAEELNRQANEVSKQIKSA 61
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGE-DCSII 193
+ ERQ+LI +G++L+E +L E+ + +PNMTHPDVP GGE D + I
Sbjct: 62 KDNDERQELIAKGRSLREQKDAAGAAQDRLEAEILELQTILPNMTHPDVPEGGEHDANEI 121
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+ +F DH QLG+ D+FDF+ A V+GS FY+L+N AV L++ L + +S
Sbjct: 122 GRGKTPVPEMDFQPLDHLQLGEKHDLFDFEGGARVAGSGFYFLRNAAVRLDLALQQFAIS 181
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ +GFTP++TP++ +SV++ GF PRG TQ+YSIE + L+ TAEIP+GG+
Sbjct: 182 HLAGKGFTPVSTPDLALTSVLQGTGFNPRGPETQIYSIENTELNLVATAEIPLGGMLSGQ 241
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
IL+ LPL+Y SHCFRTEAGAAG A++GLYRVHQF+K+EMF F P++S + HEE+
Sbjct: 242 ILASEELPLRYCGLSHCFRTEAGAAGRASKGLYRVHQFTKVEMFAFTLPDQSTAMHEEMR 301
Query: 374 RIEEDLYSSLGLHFKLL 390
+E +++ +L + ++++
Sbjct: 302 ELECEIFDALEVPYRVI 318
>sp|B5YEY8|SYS_DICT6 Serine--tRNA ligase OS=Dictyoglomus thermophilum (strain ATCC 35947
/ DSM 3960 / H-6-12) GN=serS PE=3 SV=1
Length = 425
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/320 (42%), Positives = 198/320 (61%), Gaps = 5/320 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNAN---LELVLELYEKMLNVQKEVDRLREERNAVANKM 131
ID K +R+N E + NI RN + N ++ +LEL K ++QKE+D L+ +RN ++ ++
Sbjct: 2 IDIKVLRENPELMKENIVLRNLDPNKYDVDYILELDAKRRSLQKELDTLKAQRNKISQEI 61
Query: 132 KGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCS 191
GK + ER++LI++ K LKE + LE++ K+ EL + +PN P P G ++
Sbjct: 62 -GKRKGEEREELIKKAKTLKEKIEELEKEYEKIEKELYLKLWQLPNFLSPKAPKGKDEKD 120
Query: 192 IIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINW 250
I K GN F F KDH L D+ DF+ ++V+GS FYYLKNEAV+LE L
Sbjct: 121 NIEIKRWGNIKTFTFTPKDHLDLALLNDLVDFERGSKVTGSNFYYLKNEAVLLEFALFRL 180
Query: 251 TLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIH 310
+ ++ GF TP++ R +++ GFQPRG Q+Y +E D LI TAEI +GG H
Sbjct: 181 VIDTLLPEGFKLFITPDLARMEIIDGIGFQPRGPEAQIYRVEDTDLGLIATAEITLGGYH 240
Query: 311 MDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHE 370
D IL E LPLKY FSHCFRTEAGA G RGLYRVHQFSK E+F+ C+PE+S+ HE
Sbjct: 241 KDEILDELDLPLKYLGFSHCFRTEAGAYGRYNRGLYRVHQFSKAEIFIICRPEDSEEMHE 300
Query: 371 ELIRIEEDLYSSLGLHFKLL 390
++ +EE ++ L + ++++
Sbjct: 301 YILSLEEKIFQKLEIPYRVV 320
>sp|Q82FK8|SYS1_STRAW Serine--tRNA ligase 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=serS1 PE=3 SV=1
Length = 425
Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 188/320 (58%), Gaps = 6/320 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID + +R++ + V A+ R R + L + +L E+ + D LR E+ A+ K+
Sbjct: 2 IDLRLLREDPDRVRASQRARGEDVALVDSLLSADERRRSSGVRFDELRSEQKAL-GKLIP 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K P ER +L+++ + LK + + + + +E ++ + N+ HPDVPVGGE+ ++
Sbjct: 61 KASPEERAELLKKAEQLKADVKAADVEQHEADEEAKRLLLQLGNLVHPDVPVGGEEDFVV 120
Query: 194 RKTVGNPSVFN---FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINW 250
+T G F F KDH +LG+AL D + A+VSGS+FYYL +LE+ L+N
Sbjct: 121 LETHGTIRDFGAEGFEPKDHLELGEALGAIDVERGAKVSGSRFYYLTGVGALLELALVNA 180
Query: 251 TLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIH 310
+++ + GF P+ TP +VR +E GF + A+ VY +E D L+GT+E+P+ H
Sbjct: 181 AIAQATEAGFIPMLTPALVRPRAMEGTGFLGQ-ASENVYHLEKDDYYLVGTSEVPLAAYH 239
Query: 311 MDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHE 370
MD IL LP++YA FS CFR EAG G TRG++RVHQF K+EMF + PE++++ H+
Sbjct: 240 MDEILDADKLPMRYAGFSPCFRREAGTYGKDTRGIFRVHQFDKVEMFSYVAPEDAENEHK 299
Query: 371 ELIRIEEDLYSSLGLHFKLL 390
L+ E+ + L L F+++
Sbjct: 300 RLLEWEKQWLTGLELPFQVI 319
>sp|Q9ZBX1|SYS_STRCO Serine--tRNA ligase OS=Streptomyces coelicolor (strain ATCC BAA-471
/ A3(2) / M145) GN=serS PE=3 SV=1
Length = 425
Score = 207 bits (528), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 182/320 (56%), Gaps = 6/320 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID + +R++ + V A+ R R + L + +L E+ + D LR E+ + K+ G
Sbjct: 2 IDLRLLREDPDRVRASQRARGEDVALVDSLLSADERRRSSGVRFDELRAEQKGL-GKLIG 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K E+ +L++ + LK + + + E Q+ Q + N+ HPDVPVGGE+ +
Sbjct: 61 KAAGDEKAELLKRAEQLKTDVKAADAERDAADAETQELLQRLGNLVHPDVPVGGEEDFVT 120
Query: 194 RKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINW 250
+T G F F +DH +LG+ L D + A+VSGS+FY+L +LE+ L+N
Sbjct: 121 LETHGTHRDFAAEGFEPRDHLELGQLLGAIDVERGAKVSGSRFYFLTGVGALLELALVNA 180
Query: 251 TLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIH 310
+++ GFTP+ TP +VR + GF + A VY ++ D L+GT+E+P+ H
Sbjct: 181 AIAQATAAGFTPMLTPALVRPQSMAGTGFLGQAAQ-DVYHLDKDDLYLVGTSEVPLAAYH 239
Query: 311 MDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHE 370
MD IL LPL+YA FS CFR EAG+ G TRG++RVHQF K+EMF + PE+S + H+
Sbjct: 240 MDEILDGDRLPLRYAGFSPCFRREAGSHGKDTRGIFRVHQFDKVEMFSYVLPEDSQAEHQ 299
Query: 371 ELIRIEEDLYSSLGLHFKLL 390
L+ E+ +SL L F+++
Sbjct: 300 RLLEWEKQWLTSLELPFRVI 319
>sp|B1VP80|SYS_STRGG Serine--tRNA ligase OS=Streptomyces griseus subsp. griseus (strain
JCM 4626 / NBRC 13350) GN=serS PE=3 SV=1
Length = 425
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 182/320 (56%), Gaps = 6/320 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID + +R++ + V A+ R R + L + +L E + D LR E+ ++ K+
Sbjct: 2 IDLRLLREDPDRVRASQRARGEDVGLVDALLSADELRRSSGVRFDELRAEQRSL-GKLIP 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K P ER +L+++ + LK + + + + ++ + N+ H DVPVGGE+ ++
Sbjct: 61 KATPEERTELLKKAEQLKADVKAADAAQDEAAADAKRLLLQLGNIVHEDVPVGGEEDFVV 120
Query: 194 RKTVGNPSVFN---FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINW 250
+T G F F KDH +LG+AL D + A+VSGS+FYYL +LE+ L+N
Sbjct: 121 LETHGTIRDFGAEGFEPKDHLELGEALGAIDMERGAKVSGSRFYYLTGVGALLELALVNA 180
Query: 251 TLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIH 310
+++ + GF P+ TP +VR +E GF + A VY +E D L+GT+E+P+ H
Sbjct: 181 AIAQATEAGFVPMLTPALVRPRAMEGTGFLGQAAEN-VYHLEKDDYYLVGTSEVPLAAYH 239
Query: 311 MDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHE 370
MD I+ LPL+YA FS CFR EAG G TRG++RVHQF K+EMF + P ++++ H
Sbjct: 240 MDEIIDADKLPLRYAGFSPCFRREAGTYGKDTRGIFRVHQFDKVEMFSYVDPADAEAEHR 299
Query: 371 ELIRIEEDLYSSLGLHFKLL 390
L+ E+ ++L L F+++
Sbjct: 300 RLLDWEKQWLTALELPFQVI 319
>sp|C1B914|SYS_RHOOB Serine--tRNA ligase OS=Rhodococcus opacus (strain B4) GN=serS PE=3
SV=1
Length = 418
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 177/318 (55%), Gaps = 5/318 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K++R+N +AV + R R + L + +LE D LR E+ A K+ G
Sbjct: 2 IDLKFLRENPDAVRESQRTRGEDPALVDALLEADASRRAAVLAGDNLRAEQKAFGKKV-G 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
+ P ER L+E K L + E + L + I N+ P GGED I
Sbjct: 61 QASPEERPALLEGSKELAAKVKQAEAGQHEAQAALDAAHRAISNIVQDGAPAGGEDDFIT 120
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+TVG F+F KDH +LG++L + D + A+VSG++FY+L ML++G++
Sbjct: 121 LETVGEIPAFDFEPKDHLELGESLGLIDMERGAKVSGARFYFLTGFGAMLQLGMLQLAAQ 180
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT-QVYSIEGADQCLIGTAEIPVGGIHMD 312
+ + GF + P +VR ++ GF GA++ ++Y + D L+GT+E+P+ G H
Sbjct: 181 KAMANGFQMMIPPVLVRPEIMAGTGFL--GAHSDEIYHLADDDLYLVGTSEVPLAGYHSG 238
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
IL + P +YA +S CFR EAG+ G TRG+ RVHQF K+EMF +C+PE++D+ H+ L
Sbjct: 239 EILDLADGPKRYAGWSTCFRREAGSYGKDTRGIIRVHQFDKVEMFTYCKPEDADAEHQRL 298
Query: 373 IRIEEDLYSSLGLHFKLL 390
+ E D+ +++ + ++++
Sbjct: 299 LAWERDMLAAIDVPYRVI 316
>sp|Q6NEN2|SYS_CORDI Serine--tRNA ligase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=serS PE=3 SV=1
Length = 419
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 180/318 (56%), Gaps = 6/318 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSN-ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K +R+N + V + R R + A ++ +LE EK K D LR E A K+
Sbjct: 2 IDLKLLRENPDVVRESQRIRGEDPALVDQLLEADEKRREAIKSADDLRAEHKAFGKKIS- 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
+ P ER L+E LK + EE + ++ + N+ D P GGED I+
Sbjct: 61 QASPEERPALLEGSNELKSRVKAAEEAEAEALAKVNEIQMLFGNVV-TDAPAGGEDDYIV 119
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+ VG P F+F KDH LG++L + D +V G++FYYL + L++G++N
Sbjct: 120 LEHVGTPRTFDFEPKDHLDLGESLGLIDVKRGTKVGGARFYYLTGDGAFLQLGMLNLAAQ 179
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT-QVYSIEGADQCLIGTAEIPVGGIHMD 312
+ + GF + P +VR V+ GF GA++ ++Y +E D L+GT+E+ + G H D
Sbjct: 180 KARENGFQLMIPPVLVRPEVMSGTGFL--GAHSDEIYYLERDDLYLVGTSEVALAGYHQD 237
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
I+ S P+KYA +S CFR EAG+ G TRG+ RVHQF KLEMFV+C+PEE+ + H+ L
Sbjct: 238 EIIDLSDGPIKYAGWSSCFRREAGSYGKDTRGILRVHQFDKLEMFVYCKPEEAVAQHQAL 297
Query: 373 IRIEEDLYSSLGLHFKLL 390
+ +E ++ +++ + ++++
Sbjct: 298 LNMEREMLAAVEVPYRII 315
>sp|Q0S9E8|SYS_RHOSR Serine--tRNA ligase OS=Rhodococcus sp. (strain RHA1) GN=serS PE=3
SV=1
Length = 418
Score = 202 bits (514), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 177/317 (55%), Gaps = 3/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K++R+N +AV + R R + L + +LE D LR E+ A K+ G
Sbjct: 2 IDLKFLRENPDAVRESQRTRGEDPALVDALLEADASRRAAVLAGDNLRAEQKAFGKKV-G 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
+ P ER L+E K L + E + + L + I N+ P GGED +
Sbjct: 61 QASPEERPALLEGSKELAAKVKQAEAEQHEAQAALDAAHRAISNVVQEGAPAGGEDDFVT 120
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+TVG+ F+F KDH +LG++L + D + A+VSG++FY+L ML++G++
Sbjct: 121 LETVGDIPAFDFEPKDHLELGESLGLIDMERGAKVSGARFYFLTGFGAMLQLGMLQLAAQ 180
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ + GF + P +VR ++ GF A+ +VY + D L+GT+E+P+ G H
Sbjct: 181 KAMANGFQMMIPPVLVRPEIMAGTGFLGAHAD-EVYHLADDDLYLVGTSEVPLAGYHSGE 239
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
IL + P +YA +S CFR EAG+ G TRG+ RVHQF K+EMF +C+PE++D+ H+ L+
Sbjct: 240 ILDLADGPKRYAGWSTCFRREAGSYGKDTRGIIRVHQFDKVEMFTYCKPEDADAEHQRLL 299
Query: 374 RIEEDLYSSLGLHFKLL 390
E ++ +++ + ++++
Sbjct: 300 AWEREMLAAIDVPYRVI 316
>sp|Q6A5P0|SYS_PROAC Serine--tRNA ligase OS=Propionibacterium acnes (strain KPA171202 /
DSM 16379) GN=serS PE=3 SV=1
Length = 424
Score = 201 bits (512), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 183/320 (57%), Gaps = 6/320 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K +R + +AV + R ++++ + V+ E + LR E+ + ++
Sbjct: 2 IDPKLLRTDPDAVRRSQAARGEDSSVVDDVVAADEARREAIAAHENLRAEQKGLGKRI-A 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K E+ +L+ K + + L++ + + + A+ + N+ VP GGED +I
Sbjct: 61 KASGDEKAELLSRTKTISGEVADLKKAADEADAKFTELAKTLGNIVIDGVPAGGEDEGVI 120
Query: 194 RKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINW 250
++TVG P F F KDH ++G+AL D + ++SGS+FY L LE L+N
Sbjct: 121 KETVGTPRDFAAEGFEPKDHLEIGEALGAIDMERGTKISGSRFYVLTGVGAQLEFALLNL 180
Query: 251 TLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIH 310
+S+ + GFTP+ P +V+ S +E GF + A+ VY + DQ L+GT+E+ + H
Sbjct: 181 AMSKAAQWGFTPMIPPALVKPSAMEGTGFLGQAAD-DVYYLPKDDQYLVGTSEVALAAFH 239
Query: 311 MDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHE 370
D IL ++ LP +Y AFS C+R EAG+ G TRG++RVH F K+EMFV+C P+E++++HE
Sbjct: 240 SDEILDDAELPKRYVAFSPCYRREAGSYGKDTRGIFRVHWFDKVEMFVYCLPQEAEAWHE 299
Query: 371 ELIRIEEDLYSSLGLHFKLL 390
+L+ E+D ++L + F++L
Sbjct: 300 KLLSFEKDFITALQIPFQVL 319
>sp|B8CZZ9|SYS_HALOH Serine--tRNA ligase OS=Halothermothrix orenii (strain H 168 / OCM
544 / DSM 9562) GN=serS PE=3 SV=1
Length = 422
Score = 201 bits (512), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 188/319 (58%), Gaps = 5/319 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IR+N E V+ ++ R + A L+ EL EK + +EV++L+ +RN V++K+ G+
Sbjct: 2 LDMKFIRENLETVADMLKRRGTEAPLDEFKELDEKRREIIQEVEQLKHKRNVVSSKI-GE 60
Query: 135 LEPS--ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVG-GEDCS 191
L+ + + +I E K + + +E+L + + LQQ IPNM H VPVG ED +
Sbjct: 61 LKRAGEDASDIIAEMKEVSATIKKYDEELRGIEERLQQVVLSIPNMPHDSVPVGEDEDDN 120
Query: 192 IIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWT 251
+ + G P F+F K H+ LG+ALDI DF+ ++VSG++F +LK LE LI++
Sbjct: 121 VEVRRWGEPRKFDFEFKPHWDLGEALDILDFERGSKVSGARFTFLKGAGARLERSLISFM 180
Query: 252 LSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHM 311
+ + G+T + P +V S G P+ A ++ +EG D LI TAE+PV ++
Sbjct: 181 IDHHTQNGYTEIFPPFMVNSDSCIGTGQLPKFAG-DMFKVEGTDYYLIPTAEVPVTNLYR 239
Query: 312 DSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEE 371
D IL+ LP+ + A+S CFR EAGA G TRG+ R HQF+K+E+ F P++S E+
Sbjct: 240 DEILNAEDLPVYHVAYSACFRAEAGAHGRDTRGIIRQHQFNKVELVKFVHPDKSFEELEK 299
Query: 372 LIRIEEDLYSSLGLHFKLL 390
L R E++ L L ++++
Sbjct: 300 LTRNAEEILQMLELPYRVV 318
>sp|Q9NP81|SYSM_HUMAN Serine--tRNA ligase, mitochondrial OS=Homo sapiens GN=SARS2 PE=1
SV=1
Length = 518
Score = 201 bits (512), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 181/308 (58%), Gaps = 15/308 (4%)
Query: 97 NANLELVLELYEKMLNVQKEVDRLREERNAV--------ANKMKGKLEPSER-QKLIEEG 147
+A+L ++ ++++ +Q+++ L EE+ AV AN+ G+++ + Q L G
Sbjct: 83 SADLPAIISTWQELRQLQEQIRSLEEEKAAVTEAVRALLANQDSGEVQQDPKYQGLRARG 142
Query: 148 KNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPV 207
+ +++ LV L +L ++ +A +PN THPDVPVG E + + VG+ VF+F
Sbjct: 143 REIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDVPVGDESQARVLHMVGDKPVFSFQP 202
Query: 208 KDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPE 267
+ H ++G+ LDI + VSG + YYL+ +L+ GL+N+T +++++RGFTP+T P+
Sbjct: 203 RGHLEIGEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTFNKLLRRGFTPMTVPD 262
Query: 268 IVRSSVVEKCGFQPRGANTQVYSIEGA---DQCLIGTAEIPVGGIHMDSILSESLLPLKY 324
++R +V E CG P +Q+Y+I+ A D L GTAE+ + G MD ++ LP++
Sbjct: 263 LLRGAVFEGCGMTPNANPSQIYNIDPARFKDLNLAGTAEVGLAGYFMDHTVAFRDLPVRM 322
Query: 325 AAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP--EESDSYHEELIRIEEDLYSS 382
S C+R E G RGLYRVH F+K+EMF P E+S EE + ++ ++ +
Sbjct: 323 VCSSTCYRAETN-TGQEPRGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTE 381
Query: 383 LGLHFKLL 390
LGLHF++L
Sbjct: 382 LGLHFRVL 389
>sp|Q8FLY5|SYS_COREF Serine--tRNA ligase OS=Corynebacterium efficiens (strain DSM 44549
/ YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) GN=serS
PE=3 SV=2
Length = 419
Score = 199 bits (505), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 174/317 (54%), Gaps = 4/317 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K++RDN + V + R + L + +L E + D LR E+ A K+ G
Sbjct: 2 IDLKFLRDNPDVVRTSQITRGEDPALVDELLSADEARRQAIQVADELRSEQKAFGKKI-G 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
+ P +R L+E LK + E + + N+ P GGED ++
Sbjct: 61 QASPEDRPALLEGSNELKAKVKEAEAAQETAEQRVHDLQMKLSNVVE-GAPAGGEDDFVV 119
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+ VG P F+F KDH +LG++L + D +VSG++FYYL + ML++G++
Sbjct: 120 LEHVGEPRTFDFEPKDHLELGESLGLIDMKRGTKVSGARFYYLTGDGAMLQLGMLTLAAQ 179
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ GFT + P +VR ++ GF + ++Y +E D L+GT+E+ + G H D
Sbjct: 180 KATAAGFTMMIPPVLVRPEIMAGTGFLGDHSE-EIYYLERDDMYLVGTSEVALAGYHKDE 238
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
I+ + P+KYA +S CFR EAG+ G TRG+ RVHQF K+EMFV+C+PEE++ H L+
Sbjct: 239 IIDLNNGPVKYAGWSSCFRREAGSYGKDTRGILRVHQFDKVEMFVYCKPEEAEEQHRRLL 298
Query: 374 RIEEDLYSSLGLHFKLL 390
+E+D+ +++ + ++++
Sbjct: 299 EMEKDMLAAVEVPYRII 315
>sp|Q8NLP6|SYS_CORGL Serine--tRNA ligase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=serS PE=1 SV=1
Length = 422
Score = 199 bits (505), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 181/317 (57%), Gaps = 4/317 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K++RDN + V A+ R + L + ++ E K D LR E+ A K+ G
Sbjct: 2 IDLKFLRDNPDVVRASQITRGEDPALVDELISADESRREAIKAADDLRAEQKAFGKKI-G 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
+ P +R L+E LK + E ++ + + N+ P GGED ++
Sbjct: 61 QASPEDRPALLEGSNELKAKVKDAEAAQEAAEAKVNELQMKLSNVVS-GAPAGGEDDFVV 119
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+T+G P F+F KDH +LG++L + D +VSG++FYYL + ML++G++
Sbjct: 120 LETIGEPRTFDFEPKDHLELGESLGLIDMKRGTKVSGARFYYLTGDGAMLQLGMLMLAAQ 179
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ + GF+ + P +VR ++ GF + ++Y +E D L+GT+E+ + G H D
Sbjct: 180 KAREAGFSMMIPPVLVRPEIMAGTGFLGDHSE-EIYYLERDDMYLVGTSEVALAGYHKDE 238
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
I+ + P+KYA +S CFR EAG+ G TRG+ RVHQF K+EMFV+C+PE+++ H++L+
Sbjct: 239 IIDLNEGPVKYAGWSSCFRREAGSYGKDTRGILRVHQFDKVEMFVYCKPEDAEDVHQQLL 298
Query: 374 RIEEDLYSSLGLHFKLL 390
+E+++ +++ + ++++
Sbjct: 299 GMEKEMLAAIEVPYRVI 315
>sp|B2GGG9|SYS_KOCRD Serine--tRNA ligase OS=Kocuria rhizophila (strain ATCC 9341 / DSM
348 / NBRC 103217 / DC2201) GN=serS PE=3 SV=1
Length = 434
Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 177/320 (55%), Gaps = 6/320 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID +R + + A+ R ++A L + +LE + + + + LR E+NA K+
Sbjct: 2 IDINELRADPDTYRASQTARGADAGLVDRILEADSRRRSAITDFESLRAEQNAFGKKV-A 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
+ + E+Q+L+ + K L + + + QQ PN+ +P GGED +
Sbjct: 61 RAQGEEKQQLLAQVKQLAADVKAAQAAADEAQATQQQLVTQFPNLIVEGIPAGGEDDFVQ 120
Query: 194 RKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINW 250
+T G P F F +DH +LG+ LD D + A+VSGS+FY+LK + LE L+
Sbjct: 121 LRTEGTPRDFAAEGFEPRDHLELGELLDGIDMERGAKVSGSRFYFLKRDVARLETALLMA 180
Query: 251 TLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIH 310
+ GF P+TTP +VR ++ GF + ++Y + D L+GT+E+ + G H
Sbjct: 181 AQDLALDNGFIPMTTPNLVRPGIMNGTGFDVE-HDDEIYRVGKDDLYLVGTSEVALAGYH 239
Query: 311 MDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHE 370
D IL S PL+YA +S C+R EAG+AG TRG+ RVHQF+KLEMFV+C PE++ + HE
Sbjct: 240 SDEILDLSGGPLRYAGWSSCYRREAGSAGKDTRGIIRVHQFNKLEMFVYCHPEDAAAEHE 299
Query: 371 ELIRIEEDLYSSLGLHFKLL 390
L+ EE + + GL ++++
Sbjct: 300 RLLAWEEQMLQACGLAYRVI 319
>sp|A5CNA2|SYS_CLAM3 Serine--tRNA ligase OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=serS PE=3 SV=1
Length = 426
Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 182/318 (57%), Gaps = 5/318 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL--ELVLELYEKMLNVQKEVDRLREERNAVANKMK 132
ID + +RD+ + V A+ R ++ + + V E+ V E + LR E+NA K+
Sbjct: 2 IDPQTLRDHPDLVIASQELRGASVEVVDQAVAADSERRRAV-TEFEGLRAEQNA-HGKLV 59
Query: 133 GKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSI 192
K + +++ +LI E + LK + +E + L + + IPN+ VP GGED
Sbjct: 60 AKADKADKPRLIAEVQELKARVTAAQERAQEAESALDEAMRRIPNIVIDGVPAGGEDDWA 119
Query: 193 IRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
+ + VG F+F +DH ++G+ LD D A+VSG++F+YLK LE+ L+N+ L
Sbjct: 120 LVREVGAKPSFDFAPRDHLEIGEILDAIDMGRGAKVSGARFHYLKGIGARLEIALMNFGL 179
Query: 253 SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
+ ++ G PL TP +V+ ++ GF A+ +VY ++ D L GT+E+ + G H D
Sbjct: 180 ARALEAGLVPLITPTLVKPEIMAGTGFLGAHAD-EVYHLDDDDLYLTGTSEVALAGYHAD 238
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
IL + P++YA +S C+R EAG+ G TRG+ RVHQF KLEMF + P ++++ HE L
Sbjct: 239 EILDLAQGPIRYAGWSTCYRKEAGSYGKDTRGIIRVHQFQKLEMFSYVDPADAEAEHERL 298
Query: 373 IRIEEDLYSSLGLHFKLL 390
+ ++E + LGL ++++
Sbjct: 299 LAMQERMMQDLGLSYRVI 316
>sp|Q1B1V1|SYS_MYCSS Serine--tRNA ligase OS=Mycobacterium sp. (strain MCS) GN=serS PE=3
SV=1
Length = 417
Score = 197 bits (502), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 177/317 (55%), Gaps = 4/317 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSN-ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K++R+N +AV A+ R+R + A ++ +L+ D LR E+ A + K+ G
Sbjct: 2 IDLKFLRENPDAVRASQRSRGEDPALVDALLDADAARRAAVSAADNLRAEQKAASKKV-G 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K P ER L+ + K L E + E I N+ VP GGEDC +
Sbjct: 61 KASPEERPALLTQAKELAEQVKAAEAAQADADRTFTAAHMAISNVVIEGVPAGGEDCFAV 120
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
VG P + P KDH +LG+AL + D + A+V+GS+FY+L +L++GL+ +
Sbjct: 121 LDVVGEPRAIDDP-KDHLELGEALGLIDMERGAKVAGSRFYFLTGRGALLQLGLMQLAVR 179
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
GFT + P +VR V+ GF A+ +VY +E D L+GT+E+P+ G H D
Sbjct: 180 LATDNGFTLVIPPVLVRPEVMAGTGFLGAHAD-EVYRLESDDMYLVGTSEVPLAGYHADE 238
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
I+ S P +YA +S CFR EAG+ G TRG+ RVHQF K+E F++C+PE++ + H+ L+
Sbjct: 239 IIDLSAGPRRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFIYCKPEDAAAEHDRLL 298
Query: 374 RIEEDLYSSLGLHFKLL 390
+ ++ + + + ++++
Sbjct: 299 GWQREMLALIEVPYRVI 315
>sp|A1UN98|SYS_MYCSK Serine--tRNA ligase OS=Mycobacterium sp. (strain KMS) GN=serS PE=3
SV=1
Length = 417
Score = 197 bits (502), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 177/317 (55%), Gaps = 4/317 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSN-ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K++R+N +AV A+ R+R + A ++ +L+ D LR E+ A + K+ G
Sbjct: 2 IDLKFLRENPDAVRASQRSRGEDPALVDALLDADAARRAAVSAADNLRAEQKAASKKV-G 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K P ER L+ + K L E + E I N+ VP GGEDC +
Sbjct: 61 KASPEERPALLTQAKELAEQVKAAEAAQADADRTFTAAHMAISNVVIEGVPAGGEDCFAV 120
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
VG P + P KDH +LG+AL + D + A+V+GS+FY+L +L++GL+ +
Sbjct: 121 LDVVGEPRAIDDP-KDHLELGEALGLIDMERGAKVAGSRFYFLTGRGALLQLGLMQLAVR 179
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
GFT + P +VR V+ GF A+ +VY +E D L+GT+E+P+ G H D
Sbjct: 180 LATDNGFTLVIPPVLVRPEVMAGTGFLGAHAD-EVYRLESDDMYLVGTSEVPLAGYHADE 238
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
I+ S P +YA +S CFR EAG+ G TRG+ RVHQF K+E F++C+PE++ + H+ L+
Sbjct: 239 IIDLSAGPRRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFIYCKPEDAAAEHDRLL 298
Query: 374 RIEEDLYSSLGLHFKLL 390
+ ++ + + + ++++
Sbjct: 299 GWQREMLALIEVPYRVI 315
>sp|B0RCF1|SYS_CLAMS Serine--tRNA ligase OS=Clavibacter michiganensis subsp. sepedonicus
(strain ATCC 33113 / JCM 9667) GN=serS PE=3 SV=1
Length = 426
Score = 197 bits (502), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 183/318 (57%), Gaps = 5/318 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL--ELVLELYEKMLNVQKEVDRLREERNAVANKMK 132
ID + +RD+ + V A+ R ++ + + V E+ + E + LR E+NA K+
Sbjct: 2 IDPQTLRDHPDLVIASQELRGASVEVVDQAVAADSERRQAI-TEFEGLRAEQNA-HGKLV 59
Query: 133 GKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSI 192
K + +++ +LI E + LK + +E + L + + IPN+ VP GGED
Sbjct: 60 AKADKADKPRLIAEVQELKARVTAAQERAQQAEAALDEAMRRIPNIVIDGVPAGGEDDWA 119
Query: 193 IRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
+ + VG + F+F +DH ++G+ LD D A+VSG++F++LK LE+ L+N+ L
Sbjct: 120 LLREVGEKAAFDFEPRDHLEIGEILDAIDMGRGAKVSGARFHFLKGIGARLEIALMNFGL 179
Query: 253 SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
+ ++ G PL TP +V+ ++ GF A+ +VY ++ D L GT+E+ + G H D
Sbjct: 180 ARALEAGLVPLITPTLVKPEIMAGTGFLGAHAD-EVYHLDDDDLYLTGTSEVALAGYHAD 238
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
IL + P++YA +S C+R EAG+ G TRG+ RVHQF KLEMF + P ++++ HE L
Sbjct: 239 EILDLAAGPIRYAGWSTCYRKEAGSYGKDTRGIIRVHQFQKLEMFSYVDPADAEAEHERL 298
Query: 373 IRIEEDLYSSLGLHFKLL 390
+ ++E + LGL ++++
Sbjct: 299 LAMQERMMQDLGLAYRVI 316
>sp|A3Q7P6|SYS_MYCSJ Serine--tRNA ligase OS=Mycobacterium sp. (strain JLS) GN=serS PE=3
SV=1
Length = 417
Score = 197 bits (500), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 176/317 (55%), Gaps = 4/317 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSN-ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K++R+N +AV A+ R+R + A ++ +L+ D LR E+ A + K+ G
Sbjct: 2 IDLKFLRENPDAVRASQRSRGEDPALVDALLDADAARRAAVSAADNLRAEQKAASKKV-G 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K P ER L+ K L E + E I N+ VP GGEDC +
Sbjct: 61 KASPEERPALLTRAKELAEQVKAAEAAQADADRTFTAAHMAISNVVIEGVPAGGEDCFAV 120
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
VG P + P KDH +LG+AL + D + A+V+GS+FY+L +L++GL+ +
Sbjct: 121 LDVVGEPRAIDDP-KDHLELGEALGLIDMERGAKVAGSRFYFLTGRGALLQLGLMQLAVR 179
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
GFT + P +VR V+ GF A+ +VY +E D L+GT+E+P+ G H D
Sbjct: 180 LATDNGFTLVIPPVLVRPEVMAGTGFLGAHAD-EVYRLESDDMYLVGTSEVPLAGYHADE 238
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
I+ S P +YA +S CFR EAG+ G TRG+ RVHQF K+E F++C+PE++ + H+ L+
Sbjct: 239 IIDLSAGPRRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFIYCKPEDAAAEHDRLL 298
Query: 374 RIEEDLYSSLGLHFKLL 390
+ ++ + + + ++++
Sbjct: 299 GWQREMLALIEVPYRVI 315
>sp|B0TAQ9|SYS_HELMI Serine--tRNA ligase OS=Heliobacterium modesticaldum (strain ATCC
51547 / Ice1) GN=serS PE=3 SV=1
Length = 422
Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 183/318 (57%), Gaps = 3/318 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKM-KG 133
+D K++R N EAV ++ R +N +L+ LEL + + EV+ L+ +RNAV+ ++ +
Sbjct: 2 LDTKFVRANPEAVQEALQKRGANISLDDFLELDRRRRALVVEVESLKAKRNAVSAEIARR 61
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVG-GEDCSI 192
K + + LI E + + + + L+++L ++ ++ IPN+ H VPVG E+ ++
Sbjct: 62 KKAKEDAEALIAEMRQVGDQIKALDDELTRIELDMDNRMLYIPNIPHASVPVGTSEEDNV 121
Query: 193 IRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
+ G P F+FPVK H+ +G+ L+I DF A++SG++F K LE +IN +
Sbjct: 122 EVRRWGTPRTFDFPVKAHWDIGEDLNILDFQRGAKISGARFTVYKGLGARLERAVINLMM 181
Query: 253 SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
+RG+T + P +V + G P+ A ++++ G D LI TAE+PV ++ +
Sbjct: 182 DTHAQRGYTEVLPPYLVNRQSMLGTGQLPKFAE-DMFAVAGTDYYLIPTAEVPVTNLYTN 240
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
IL LP+ + A+S CFR EAGAAG TRGL R HQF+K+E+ F +PE S E+L
Sbjct: 241 EILDADKLPIHHCAYSACFRAEAGAAGRDTRGLIRQHQFNKVELVKFTRPENSYDELEKL 300
Query: 373 IRIEEDLYSSLGLHFKLL 390
+ E + LGL ++++
Sbjct: 301 TKDAEHILQLLGLPYRVI 318
>sp|Q1IZU9|SYS_DEIGD Serine--tRNA ligase OS=Deinococcus geothermalis (strain DSM 11300)
GN=serS PE=3 SV=1
Length = 437
Score = 195 bits (495), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 118/319 (36%), Positives = 183/319 (57%), Gaps = 5/319 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IR++ V I + N +L+ +L + +++ +++ V+ L+ ERNA A K+ K
Sbjct: 2 LDLKFIREHPGTVKHAIAVKGVNLDLDELLRIDRELVELRQRVEALQTERNANA-KLVPK 60
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIR 194
P ER LI++GK+L E + LE L D+L+Q +PN+ HP VPVG +D +
Sbjct: 61 ATPEERPHLIQKGKDLAEDIKALEPQLRAHEDQLRQLLLRVPNIPHPSVPVGQDDSENVE 120
Query: 195 -KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+ G F FP DH +L + D + A VSGS+ Y LK +AV+LEM ++ + L
Sbjct: 121 LRREGQLPEFAFPPLDHVELLERQGWSDPERVARVSGSRSYLLKGDAVLLEMAVLMFALD 180
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ RG TPL+T +VR + G P G QVY IEG + L GTAE+PV ++
Sbjct: 181 FLRGRGLTPLSTTALVRPETLVGSGHFP-GGEDQVYKIEGDELMLAGTAEVPVNSLYAGE 239
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDS--YHEE 371
LS LPL +AA S FR+EAG+AG RGL RVH+F K+E +V + +E+++ +
Sbjct: 240 QLSYEELPLAFAAISAAFRSEAGSAGRDVRGLIRVHEFRKVEQYVMTRADEAEALRWFGA 299
Query: 372 LIRIEEDLYSSLGLHFKLL 390
++ E L +L L ++++
Sbjct: 300 ILENAEGLLRALELPYRVV 318
>sp|Q8U1K2|SYS_PYRFU Serine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=serS PE=3 SV=1
Length = 455
Score = 194 bits (493), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 190/343 (55%), Gaps = 30/343 (8%)
Query: 75 IDFKWIRDNKEAVSANIRNR---NSNANLELVLELYEKMLNVQKEVDRLREERNAVA--- 128
+D IR+N E V +++ R + A ++ +L L E+ KE++RLR ERN +A
Sbjct: 2 LDINLIRNNPELVKNDLKKRGELDKIAWIDEILRLDEEWRKKLKEINRLRHERNKIAIEI 61
Query: 129 NKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGE 188
K K EP E L+ + K + + + LE+++ +L + +PN+THP VPVG +
Sbjct: 62 GKRKKAGEPVE--DLLAKSKEIVKRIEELEKEVEELRKRIDYYLWRLPNITHPSVPVGKD 119
Query: 189 DC-------------------SIIRKTVGNPS--VFNFPVKDHFQLGKALDIFDFDAAAE 227
+ S + ++ G V + K H L + L DF AA+
Sbjct: 120 ENDNVPIRFWGKAKVWKGHLESFLEQSQGKMEYEVLEWRPKLHVDLLEILGGADFARAAK 179
Query: 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ 287
VSGS+FYYL NE V+L++ LI + L +I++GFTP+ P +VR VE+
Sbjct: 180 VSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRR-FVEEGSTTFEDFEDV 238
Query: 288 VYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYR 347
+Y +EG D LI TAE P+ G+H + IL LPL Y AFS CFR EAG AG T+G++R
Sbjct: 239 IYKVEGEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVAFSPCFRKEAGTAGKDTKGIFR 298
Query: 348 VHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLL 390
VHQF K+E FV+ +PEES +HE L+R E+L+ L + ++++
Sbjct: 299 VHQFHKVEQFVYSRPEESWEWHERLVRNAEELFQELEIPYRVV 341
>sp|Q67TJ8|SYS_SYMTH Serine--tRNA ligase OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=serS PE=3 SV=1
Length = 421
Score = 194 bits (493), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 182/320 (56%), Gaps = 3/320 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG- 133
+D +++R N + V + N+ + +L+ +L L + + EV++L+ RN V+ ++
Sbjct: 2 LDLRFVRTNPDVVRQALINKGVSVDLDRILALDVERRQILAEVEQLKARRNQVSKQVGIL 61
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K + + +I E + + + L++ +++DELQ +PN+ PDVPVG ++ +
Sbjct: 62 KQQGQDVSAIIAEMGAIGDRIKELDDRERQVSDELQDLLYQLPNLPAPDVPVGPDETGNV 121
Query: 194 R-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
K G P F FPVK H+ LG A+D DF+ AA+V+GS+F ++K L L+++ +
Sbjct: 122 EVKRWGEPRQFAFPVKPHWDLGVAMDGLDFERAAKVTGSRFSFIKGGLARLHRALVSFFI 181
Query: 253 SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
+ +RG+ + P I+ ++ G P+ V+S+ G D L TAE+P+ +H D
Sbjct: 182 DYLTERGYREVLPPVIINTASYYGSGQFPK-FKEDVFSLAGTDYHLASTAEVPLVNMHRD 240
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
IL E++LPL+Y +S CFR+EAGAAG TRGL R H F K+EM F +PEES+ E+
Sbjct: 241 EILDEAVLPLRYVGYSGCFRSEAGAAGRDTRGLIRQHYFEKVEMVQFTRPEESEQALMEI 300
Query: 373 IRIEEDLYSSLGLHFKLLLF 392
+ E + L L ++ +L
Sbjct: 301 VANAEGMLEQLNLPYRRMLM 320
>sp|A0R638|SYS_MYCS2 Serine--tRNA ligase OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=serS PE=1 SV=1
Length = 417
Score = 194 bits (493), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 179/317 (56%), Gaps = 4/317 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID + +R+N + V A+ R R + L + +L + D LR E+ A A+K+ G
Sbjct: 2 IDLRLLRENPDIVRASQRARGEDPALVDALLAADTARRSAVSAADNLRAEQKA-ASKLVG 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K P ER L++ K+L E + E + I N+ VP GGED ++
Sbjct: 61 KASPDERPALLQRAKDLAEQVKAAEAAQAEAEQAFTAAHMAISNVIFEGVPAGGEDDFVV 120
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
TVG P P KDH +LG++L + D + A+VSGS+FY+L +L++GL+
Sbjct: 121 LDTVGEPRAIENP-KDHLELGESLGLIDMERGAKVSGSRFYFLTGAGALLQLGLLQLATQ 179
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
++ GFT + P +VR V+ GF A+ +VY +E D L+GT+E+P+ G H D
Sbjct: 180 VAVQNGFTLMIPPVLVRPEVMRGTGFLGAHAD-EVYRLEADDMYLVGTSEVPLAGYHADE 238
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
IL S P +YA +S CFR EAG+ G TRG+ RVHQF K+E F++C+PE++++ H+ L+
Sbjct: 239 ILDLSAGPRRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEGFIYCKPEDAEAEHQRLL 298
Query: 374 RIEEDLYSSLGLHFKLL 390
+ ++ +++ + ++++
Sbjct: 299 GWQREMLAAIEVPYRVI 315
>sp|Q5Z3K9|SYS_NOCFA Serine--tRNA ligase OS=Nocardia farcinica (strain IFM 10152)
GN=serS PE=3 SV=1
Length = 420
Score = 194 bits (492), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 3/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID + +R++ +AV A+ R R + L + +LE D LR E+ A++ ++ G
Sbjct: 2 IDLRLLREDPDAVRASQRARGEDPALVDALLEADAARRAAVATADNLRAEQKAMSKQI-G 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K ER L+ + L + E +L + + N+ P VP GGED ++
Sbjct: 61 KAPKEERSALLARAQELSVKVKEAEAAQHAADADLDAAHRALSNVVLPAVPAGGEDDYVV 120
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+TVG P F+F KDH +LG+AL + D + A+VSGS+FY+L +L++GL+
Sbjct: 121 LETVGTPPEFDFEPKDHLELGEALGLMDMERGAKVSGSRFYFLTGHGALLQLGLLQLAAQ 180
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ + GFT + P +VR V+ GF R A +VY + D L+GT+E+P+ G H D
Sbjct: 181 KAVANGFTMMIPPVLVRPEVMAGTGFLGRHA-AEVYHLADDDMYLVGTSEVPLAGYHADE 239
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
IL S P +YA +S CFR EAG+ G TRG+ RVHQF K+EMFV+ P+++++ HE L+
Sbjct: 240 ILDLSAGPKRYAGWSSCFRREAGSYGKDTRGIIRVHQFDKVEMFVYTTPDQAEAEHERLL 299
Query: 374 RIEEDLYSSLGLHFKLL 390
E ++ +++ + ++++
Sbjct: 300 AWEREMLAAIEVPYRII 316
>sp|A4XJH1|SYS_CALS8 Serine--tRNA ligase OS=Caldicellulosiruptor saccharolyticus (strain
ATCC 43494 / DSM 8903) GN=serS PE=3 SV=1
Length = 420
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 182/321 (56%), Gaps = 5/321 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKM-KG 133
+D K+IR N E V + RN + ++ +LEL EK + EV++++ +N + ++ K
Sbjct: 2 LDLKFIRSNPEKVQEGLNKRNKDISIAPILELDEKRRKLLAEVEKMKAIQNQKSKEIPKL 61
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
K E + +L+ E K L + + L+ + ++ DE+++ IPN+ H VP+G +D +
Sbjct: 62 KKEGKDTTELMNELKELSDKIKELDSQVKEVEDEIEKILLTIPNIPHESVPIGKDDTENV 121
Query: 194 R-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
+ G P V +F +K H+++G+ L I DF+ A++VSGS+F + + LE LIN+ L
Sbjct: 122 EVRRWGEPRVPDFEIKPHWEIGEKLGILDFERASKVSGSRFTFYRGLGARLERALINFML 181
Query: 253 S-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHM 311
+ K G+ L P +V + G P+ + + D LI TAE+PV H
Sbjct: 182 DLHIEKHGYVELFPPFLVARKSMIGTGQLPKFEEDAFKTTD--DYFLIPTAEVPVTNYHR 239
Query: 312 DSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEE 371
+ IL E LP+KY A+S CFR EAGAAG TRGL R HQF+K+E+ F +PE+S E+
Sbjct: 240 EEILKEEDLPIKYVAYSACFRAEAGAAGKDTRGLIRQHQFNKVELVKFAKPEDSYDELEK 299
Query: 372 LIRIEEDLYSSLGLHFKLLLF 392
L ED+ LGL ++++L
Sbjct: 300 LTADAEDVLKHLGLPYRVVLL 320
>sp|A1SD34|SYS_NOCSJ Serine--tRNA ligase OS=Nocardioides sp. (strain BAA-499 / JS614)
GN=serS PE=3 SV=1
Length = 424
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 168/325 (51%), Gaps = 16/325 (4%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLRE--ERNAVANKMK 132
ID + +RD + V A R L E+ + L+ E R E K
Sbjct: 2 IDPRVLRDEPDRVRAAQVKRG------LSDEVVDHALSADGERRRAIAAFEAKRAEQKQL 55
Query: 133 GKLEPS----ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGE 188
GKL P E+Q L+ + K L + E + Q IPN+ + P GGE
Sbjct: 56 GKLIPQAQGEEKQALLAQTKTLAAEVKQAEAAQAVAEEAWQAALMSIPNLAADEAPAGGE 115
Query: 189 DCSIIRKTVGNPSVF---NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEM 245
D ++ + +G P F F +DH +LG+ L D D A+VSGS+FY+L LE+
Sbjct: 116 DDYVVLEEIGTPRDFAADGFEPRDHIELGRMLGAIDLDRGAKVSGSRFYFLTGAGAELEL 175
Query: 246 GLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIP 305
L+N + + + GFTP+ P +V+ ++ GF + A+ VY IEG D L+GT+E+P
Sbjct: 176 ALVNLAMQQARESGFTPVIAPSMVKPRAMDGTGFLGQAAD-DVYRIEGQDMYLVGTSEVP 234
Query: 306 VGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEES 365
+ H D IL LPL+YAAFS CFR EAG+ G T+G+ RVH F K+EMFV+ EES
Sbjct: 235 MAAYHSDEILDGGALPLRYAAFSPCFRKEAGSHGKDTKGIIRVHWFDKVEMFVYTTTEES 294
Query: 366 DSYHEELIRIEEDLYSSLGLHFKLL 390
+ H+ L+ E++ L L ++++
Sbjct: 295 YAEHQRLLAWEKEFLEKLELAYRVI 319
>sp|A0LWR6|SYS_ACIC1 Serine--tRNA ligase OS=Acidothermus cellulolyticus (strain ATCC
43068 / 11B) GN=serS PE=3 SV=1
Length = 420
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 167/317 (52%), Gaps = 3/317 (0%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID + +RD+ E + A+ R R + L + L E + LR E+ A+ ++
Sbjct: 2 IDLRLLRDDPERLRASQRARGEDPGLVDAALAADENRRAAVARFEALRAEQKALGRRI-A 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
P E+ L++ K L E + E ++ I N+ + P GGE+ ++
Sbjct: 61 SAPPDEKPALLDRAKELAELVKAAEAARDDADAACREALLAISNLVDDEAPRGGEEDFVV 120
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+ +G P F+FP +DH +LG+ L D + AA+VSGS+FYYL +LE L++ L
Sbjct: 121 LEEIGTPPTFSFPPRDHLELGERLGAIDVERAAKVSGSRFYYLTGVGALLEFALVDLALR 180
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ + GF P+ P +VR +E GF + A V+ +E D L+GT+E+ + HM
Sbjct: 181 QAVTAGFVPVIPPVLVRPPAMEGTGFLGQAAEN-VFHLEKDDFYLVGTSEVSLAAYHMGE 239
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373
IL + LP +Y FS CFR EAG+ G TRG+ RVHQF K+EMF F E+ + H L+
Sbjct: 240 ILDAAQLPRRYVGFSTCFRREAGSHGKDTRGIIRVHQFDKVEMFSFTTVGEAAAEHRRLL 299
Query: 374 RIEEDLYSSLGLHFKLL 390
E+ ++L + F+++
Sbjct: 300 EWEKQFLTALEIPFRVI 316
>sp|Q9RUV5|SYS_DEIRA Serine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=serS PE=3 SV=1
Length = 425
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 183/319 (57%), Gaps = 5/319 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IR+N +AV IR +N +L+ +L+ ++ +++ V+ ++ ERNA A K+ K
Sbjct: 2 LDLKFIRENPDAVREAIRVKNVALDLDDLLQRDRDLVALKQRVEAMQTERNANA-KLVPK 60
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVG-GEDCSII 193
P +R LI++GK+L E L LE L + D L+Q +PN+ P VPVG ED ++
Sbjct: 61 ASPEDRPGLIQKGKDLSEDLKALEPQLREQEDALKQLLLRVPNIPLPGVPVGKDEDDNVE 120
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
+ G F+F D ++ + DF+ A VSGS+ Y LK +A +LEM ++ + L
Sbjct: 121 LRREGELPGFDFTPLDQVEILEKQGWADFERVARVSGSRSYLLKGDAALLEMAVLMFALD 180
Query: 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313
+ +RGFTPL+T +VR + G P G VY +EG + L GTAE+P+ ++
Sbjct: 181 FLSQRGFTPLSTTALVRRETLVNSGHFP-GDEESVYKLEGDELLLAGTAEVPINSLYAGE 239
Query: 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP--EESDSYHEE 371
LS LPL +A FS FR EAG+AG RGL RVH+F K+E +V C+ EE + E
Sbjct: 240 QLSADELPLTFAGFSAAFRREAGSAGRDVRGLIRVHEFRKVEQYVLCRADQEEGLKWFER 299
Query: 372 LIRIEEDLYSSLGLHFKLL 390
L+ E L +L L ++++
Sbjct: 300 LLSNAEGLLQALELPYRVI 318
>sp|O58441|SYS_PYRHO Serine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=serS PE=1
SV=2
Length = 455
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 188/343 (54%), Gaps = 30/343 (8%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELV---LELYEKMLNVQKEVDRLREERNAVA--- 128
+D K IR+N E V ++ R ++ V L+L + KE++RLR ERN +A
Sbjct: 2 LDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEI 61
Query: 129 NKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVG-G 187
K + K EP + +L+ + + + + + LE ++ +L ++ +PN+THP VPVG
Sbjct: 62 GKRRKKGEPVD--ELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKD 119
Query: 188 EDCSIIRKTVGNPSVFN--------------------FPVKDHFQLGKALDIFDFDAAAE 227
E+ ++ + G V+ + K H L + L DF AA+
Sbjct: 120 ENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAAK 179
Query: 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ 287
VSGS+FYYL NE V+L++ LI + L +I++GFTP+ P +VR VE+
Sbjct: 180 VSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRR-FVEEGSTSFEDFEDV 238
Query: 288 VYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYR 347
+Y +E D LI TAE P+ G+H + IL LPL Y S CFR EAG AG T+G++R
Sbjct: 239 IYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFR 298
Query: 348 VHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLL 390
VHQF K+E FV+ +PEES +HE++IR E+L+ L + ++++
Sbjct: 299 VHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVV 341
>sp|A0JR71|SYS_ARTS2 Serine--tRNA ligase OS=Arthrobacter sp. (strain FB24) GN=serS PE=3
SV=1
Length = 426
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 180/322 (55%), Gaps = 12/322 (3%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K + +N + A+ R R ++ ++ + ++ + LR E+NA K+
Sbjct: 2 IDVKDLSENPDKFRASQRARGADESVVDAIISADAARRAALIRFENLRAEQNAFGKKV-A 60
Query: 134 KLEPSERQKLIEEGKNLKEGL--VTLEEDLVKLTDELQQEA--QCIPNMTHPDVPVGGED 189
+ + E+Q L+ E K L + + E D+ + QQE + IPN+ VP GGED
Sbjct: 61 QAKGEEKQALLAEVKVLAASVKAASAEADVA----QAQQEELLRAIPNLIVDGVPEGGED 116
Query: 190 CSIIRKTVGNPSVF-NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLI 248
I+ KTVG P F +F KDH ++G+ + D + A+VSGS+FY+L+ LEM L+
Sbjct: 117 DYIVVKTVGEPREFPDFEPKDHLEIGELIGAIDMERGAKVSGSRFYFLRGVGARLEMALL 176
Query: 249 NWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGG 308
+ + I GF P+ TP +VR ++ GF + + ++Y + D L+GT+E+ + G
Sbjct: 177 QMAMEQAIDAGFIPMITPTLVRPETMQGTGFDVK-HDAEIYRLAEDDLYLVGTSEVALAG 235
Query: 309 IHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSY 368
H D IL S P++YA S C+R EAG+ G TRG+ RVHQF+K+EMF++ EE+ +
Sbjct: 236 YHADEILDLSAGPIRYAGQSSCYRREAGSHGKDTRGIIRVHQFNKVEMFIYTTVEEAAAE 295
Query: 369 HEELIRIEEDLYSSLGLHFKLL 390
HE L+ EE++ + L ++++
Sbjct: 296 HERLLAWEEEMLAKCELPYRVI 317
>sp|Q9UZ21|SYS_PYRAB Serine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=serS PE=3 SV=1
Length = 455
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 192/343 (55%), Gaps = 30/343 (8%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELV---LELYEKMLNVQKEVDRLREERNAVA--- 128
+D K IR+N E V +++ R ++ + L+L + KE+++LR ERN +A
Sbjct: 2 LDIKLIRENPELVKNDLKKRGELEKIKWIDEILKLDAEWRAKLKEINKLRHERNKIAIEI 61
Query: 129 NKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVG-G 187
K + K EP E +L+ + K + + + +LE+++ +L ++ +PN+THP VP+G
Sbjct: 62 GKRRKKGEPVE--ELLAKSKEIVKRIESLEKEVEELKKKIDYYLWRLPNITHPSVPIGES 119
Query: 188 EDCSIIRKTVGNPSVFN--------------------FPVKDHFQLGKALDIFDFDAAAE 227
E+ ++ + G V+ + K H L + L DF AA+
Sbjct: 120 EEDNVPIRFWGKARVWEGHLERFLEQSQGKMEYEVLEWRPKLHVDLLEILGGADFARAAK 179
Query: 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ 287
VSGS+FYYL NE V+L++ LI + L E+IK+GFTP+ P +VR VE+
Sbjct: 180 VSGSRFYYLLNEIVILDLALIRFALDELIKKGFTPVIPPYMVRR-FVEEGSTTFEDFEDV 238
Query: 288 VYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYR 347
+Y +EG D LI TAE P+ G+H + IL LPL Y S CFR EAG AG T+G++R
Sbjct: 239 IYKVEGEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGISPCFRKEAGTAGKDTKGIFR 298
Query: 348 VHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLL 390
VHQF K+E FV+ +PEES +HE +IR E+L+ L + ++++
Sbjct: 299 VHQFHKVEQFVYSRPEESWEWHERIIRNAEELFQKLEIPYRVV 341
>sp|Q3ZWY0|SYS_DEHSC Serine--tRNA ligase OS=Dehalococcoides sp. (strain CBDB1) GN=serS
PE=3 SV=1
Length = 413
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 180/317 (56%), Gaps = 11/317 (3%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IR+N E V + +RN++A ++ +LEL N+ +E+D LR +R +A +
Sbjct: 2 LDLKFIRENPELVRKAVADRNTDAPIDEILELDNSRRNLTQELDNLRAKRKIMAKQRD-- 59
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDC-SII 193
+ IEEG+ L+ + TLE +L ++ ++L +PN+ P VPVG ++ +++
Sbjct: 60 ------ETAIEEGRVLRGQISTLESELSQVDEKLTDRLLRVPNIPDPSVPVGKDESENVV 113
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
G F+F K H++LG+ALDI DFD ++SGS+FY LK L+ LI + L
Sbjct: 114 LYYRGEKRNFSFTPKPHWELGEALDIIDFDRGIKLSGSRFYILKGAGARLQRALIAFMLD 173
Query: 254 -EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
K +T + P +++ + G P+ A+ + E D + TAE P+ +H D
Sbjct: 174 LHTRKHDYTEIYPPYMIKRECLVASGNLPKFADNLYHDAE-EDYWWVPTAEAPLTNLHRD 232
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
ILS LP+ Y A++ CFR E +AG RG+ R+HQF K+E++ +C+PE+S + E++
Sbjct: 233 EILSAEQLPIHYVAYTACFRREKMSAGKDVRGIKRLHQFDKVELYKYCKPEDSFAELEKM 292
Query: 373 IRIEEDLYSSLGLHFKL 389
+ E++ +L + ++L
Sbjct: 293 VADAEEIADALKIPYRL 309
>sp|A5FRN4|SYS_DEHSB Serine--tRNA ligase OS=Dehalococcoides sp. (strain BAV1) GN=serS
PE=3 SV=1
Length = 413
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 180/317 (56%), Gaps = 11/317 (3%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134
+D K+IR+N E V + +RN++A ++ +LEL N+ +E+D LR +R +A +
Sbjct: 2 LDLKFIRENPELVRKAVADRNTDAPIDEILELDNSRRNLTQELDNLRAKRKIMAKQRD-- 59
Query: 135 LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDC-SII 193
+ IEEG+ L+ + TLE +L ++ ++L +PN+ P VPVG ++ +++
Sbjct: 60 ------ETAIEEGRVLRGQISTLESELSQVDEKLTDRLLRVPNIPDPSVPVGKDESENVV 113
Query: 194 RKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253
G F+F K H++LG+ALDI DFD ++SGS+FY LK L+ LI + L
Sbjct: 114 LYYRGEKRNFSFTPKPHWELGEALDIIDFDRGIKLSGSRFYILKGAGARLQRALIAFMLD 173
Query: 254 -EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
K +T + P +++ + G P+ A+ + E D + TAE P+ +H D
Sbjct: 174 LHTRKHDYTEIYPPYMIKRECLVASGNLPKFADNLYHDAE-EDYWWVPTAEAPLTNLHRD 232
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
ILS LP+ Y A++ CFR E +AG RG+ R+HQF K+E++ +C+PE+S + E++
Sbjct: 233 EILSAEQLPIHYVAYTACFRREKMSAGKDVRGIKRLHQFDKVELYKYCKPEDSFAELEKM 292
Query: 373 IRIEEDLYSSLGLHFKL 389
+ E++ +L + ++L
Sbjct: 293 VADAEEIADALKIPYRL 309
>sp|C4LGQ1|SYS_CORK4 Serine--tRNA ligase OS=Corynebacterium kroppenstedtii (strain DSM
44385 / CCUG 35717) GN=serS PE=3 SV=1
Length = 423
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 181/328 (55%), Gaps = 22/328 (6%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K +RD+ + V + R R + L + +L+ + D R E A M
Sbjct: 2 IDLKQLRDDPDRVRESQRTRGEDPGLVDQLLQADQARREAISAADATRAEHKAYTKSMGK 61
Query: 134 KLE---PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC--------IPNMTHPD 182
K+ P E++ L +G L ++VK +E Q+ A+ I N+
Sbjct: 62 KMRDASPEEKENLRAKGTELS--------NVVKEKEEAQRVAEASVHDLQMQISNIVE-G 112
Query: 183 VPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVM 242
P GGE+ ++ + VG P F+F KDH +LG++L I D + A+VSGS+FY+LK +
Sbjct: 113 APAGGEEDFVVVEKVGTPPQFDFEPKDHLELGESLGIIDMERGAKVSGSRFYFLKGAGAL 172
Query: 243 LEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTA 302
L++G++ + ++ GF + TP IV + GF + A+ ++Y ++ +Q L+GT+
Sbjct: 173 LQLGMLQLAAQKAVQHGFELMITPVIVNPESMSGTGFLGQHAD-EIYYLQEDNQYLVGTS 231
Query: 303 EIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP 362
E+ + G H I+ S P +YA +S CFR EAG+ G TRG+ RVHQF K+EMF +C+P
Sbjct: 232 EVALAGYHSKEIIDLSAGPKRYAGWSSCFRREAGSYGKDTRGILRVHQFDKVEMFSYCKP 291
Query: 363 EESDSYHEELIRIEEDLYSSLGLHFKLL 390
E++ + H++L+ +E ++ +++ + ++++
Sbjct: 292 EDAAAEHQKLLSMEREMLAAVEVPYRII 319
>sp|C0QLD3|SYS_DESAH Serine--tRNA ligase OS=Desulfobacterium autotrophicum (strain ATCC
43914 / DSM 3382 / HRM2) GN=serS PE=3 SV=1
Length = 427
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 178/319 (55%), Gaps = 4/319 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKM-KG 133
++ K++R+N E V + R A+ E +K + ++++ LR +RN V++++ +
Sbjct: 2 LEIKYVRENIEEVKQALAKRAGKADFEGFARAEKKRRELLQQIEELRHQRNTVSDEIARM 61
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDC-SI 192
K + I E + + + + TL++ L + D +QQ IPNM HPDVP+G D +
Sbjct: 62 KRNKEDAGTSILEMRTVSDEIKTLDKTLAEQDDFIQQFMMAIPNMPHPDVPMGASDADNT 121
Query: 193 IRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
+ K VG P F+FP+K H+ +G+ L I DF AA+++G++F LE LIN+ L
Sbjct: 122 LEKKVGTPRSFDFPIKAHWDIGEDLGILDFPRAAKITGARFSLYLGSGAKLERALINFML 181
Query: 253 S-EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHM 311
+ G+T P IV + G P+ ++ IEG + LI T+E+P+ I+
Sbjct: 182 DLHTNEHGYTETLPPFIVNRESLLGTGQLPK-FEEDLFKIEGQEYYLIPTSEVPMTNIYR 240
Query: 312 DSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEE 371
D +L+E LP+K+ A++ CFR+EAG+ G TRGL R HQF+K+E+ + PE S E
Sbjct: 241 DEVLNEENLPIKFTAYTPCFRSEAGSYGKDTRGLIRQHQFNKVELVKYTTPETSYQELES 300
Query: 372 LIRIEEDLYSSLGLHFKLL 390
L+ E + LGL ++++
Sbjct: 301 LLANAETVLKRLGLPYQVV 319
>sp|A1R120|SYS_ARTAT Serine--tRNA ligase OS=Arthrobacter aurescens (strain TC1) GN=serS
PE=3 SV=1
Length = 426
Score = 188 bits (478), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 176/318 (55%), Gaps = 4/318 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K + +N + A+ R R ++ ++ + ++ + LR E+NA K+
Sbjct: 2 IDVKDLSENPDKFRASQRARGADESVVDAIISADSDRRAALIRHETLRAEQNAFGKKV-A 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
+ + E+Q L+ E K L + + + ++ + IPN+ VP GGED ++
Sbjct: 61 QAKGEEKQALLAEVKELANSVKAASAEAAAAQAKQEELLRVIPNLVVDGVPEGGEDDYVV 120
Query: 194 RKTVGNPSVF-NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
KTVG P F +F KDH ++G+ + D + A+VSGS+FY+L+ LEM L+ +
Sbjct: 121 LKTVGTPREFTDFEPKDHLEIGELIGAIDMERGAKVSGSRFYFLRGVGARLEMALLQMAM 180
Query: 253 SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
+ I GF P+ TP +VR ++ GF + + ++Y + D L+GT+E+ + G H D
Sbjct: 181 EQAIDAGFVPMITPTLVRPETMQGTGFDVK-HDAEIYRLAEDDLYLVGTSEVALAGYHAD 239
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
IL S P++YA S C+R EAG+ G TRG+ RVHQF+K+EMF++ EE+ + HE L
Sbjct: 240 EILDLSAGPIRYAGQSSCYRREAGSHGKDTRGIIRVHQFNKVEMFIYTTVEEAAAEHERL 299
Query: 373 IRIEEDLYSSLGLHFKLL 390
+ EE++ + L ++++
Sbjct: 300 LAWEEEMLAKCELPYRVI 317
>sp|A0LI63|SYS_SYNFM Serine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=serS PE=3 SV=1
Length = 423
Score = 188 bits (478), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 180/319 (56%), Gaps = 4/319 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG- 133
+D +++RDN + + +RNR + +L ++EL + + +EV+ L+ RN + ++
Sbjct: 2 LDLRFVRDNVDKIDMMLRNRRMDLSLAPLIELDTQRRRILREVEELKFRRNKASEEISNL 61
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGG-EDCSI 192
K E + LIEE K + + TL+++L + + + IPNM H VPVG E +
Sbjct: 62 KREKKDSSLLIEEMKEVSRRVKTLDQELTVIEEHFRDFLLLIPNMPHESVPVGADEKDNP 121
Query: 193 IRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
+ KT G+ +F K H+++G+AL I DF+ AA+++G++F LE LI + L
Sbjct: 122 VAKTWGSKPELDFEPKPHWEIGEALGILDFERAAKIAGARFALYWKMGAALERALIAFML 181
Query: 253 SEVIKR-GFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHM 311
KR G+T + P IV S+ + G P+ ++ +E D L+ TAE+PV IHM
Sbjct: 182 DIHTKRHGYTEVLPPFIVNSTSLLGTGQLPK-FKEDLFKLEDRDFYLVPTAEVPVTNIHM 240
Query: 312 DSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEE 371
+ L ES LP Y AF+ CFR+EAG+ G TRGL R HQF+K+E+ +PE S E+
Sbjct: 241 NETLEESELPKLYTAFTPCFRSEAGSYGKDTRGLIRQHQFNKVELVKLVKPESSYEELEK 300
Query: 372 LIRIEEDLYSSLGLHFKLL 390
L+ E + LGLH++++
Sbjct: 301 LLLDAERILQELGLHYRVV 319
>sp|B8H9Q1|SYS_ARTCA Serine--tRNA ligase OS=Arthrobacter chlorophenolicus (strain A6 /
ATCC 700700 / DSM 12829 / JCM 12360) GN=serS PE=3 SV=1
Length = 426
Score = 188 bits (477), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 176/318 (55%), Gaps = 4/318 (1%)
Query: 75 IDFKWIRDNKEAVSANIRNRNSNANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133
ID K + +N + A+ R R ++ ++ + ++ + LR E+N K+
Sbjct: 2 IDVKDLSENPDKFRASQRARGADESVVDAIISADSARRAALIRYENLRAEQNVFGKKV-A 60
Query: 134 KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSII 193
+ + E+Q L+ E K L + + + ++ + +PN+ VP GGED ++
Sbjct: 61 QAKGEEKQALLAEVKELANSVKAASAEADAAQTKQEELLRTVPNLVEDGVPEGGEDDYVV 120
Query: 194 RKTVGNPSVF-NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTL 252
KTVG P F +F KDH ++G+ + D + A+VSGS+FY+L+ LEM L+ +
Sbjct: 121 VKTVGTPREFPDFEPKDHLEIGELIGAIDMERGAKVSGSRFYFLRGVGARLEMALLQMAM 180
Query: 253 SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMD 312
+ I+ GF P+ TP +VR ++ GF + + ++Y + D L+GT+E+ + G H D
Sbjct: 181 EQAIEAGFIPMITPTLVRPETMQGTGFDVK-HDAEIYRLAEDDLYLVGTSEVALAGYHAD 239
Query: 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372
IL S P++YA S C+R EAG+ G TRG+ RVHQF+K+EMF++ EE+ + H+ L
Sbjct: 240 EILDFSAGPIRYAGQSSCYRREAGSHGKDTRGIIRVHQFNKVEMFIYTTVEEAAAEHQRL 299
Query: 373 IRIEEDLYSSLGLHFKLL 390
+ EE++ + L ++++
Sbjct: 300 LAWEEEMLAKCELPYRVI 317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,520,408
Number of Sequences: 539616
Number of extensions: 6092396
Number of successful extensions: 25081
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 644
Number of HSP's that attempted gapping in prelim test: 21620
Number of HSP's gapped (non-prelim): 1718
length of query: 396
length of database: 191,569,459
effective HSP length: 120
effective length of query: 276
effective length of database: 126,815,539
effective search space: 35001088764
effective search space used: 35001088764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)