Query 016049
Match_columns 396
No_of_seqs 257 out of 2006
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02320 seryl-tRNA synthetase 100.0 4.4E-92 9.6E-97 725.4 36.7 378 17-395 4-387 (502)
2 COG0172 SerS Seryl-tRNA synthe 100.0 1.6E-81 3.6E-86 634.3 33.2 321 74-395 1-327 (429)
3 PLN02678 seryl-tRNA synthetase 100.0 2.8E-80 6.1E-85 634.2 35.3 320 74-395 1-331 (448)
4 PRK05431 seryl-tRNA synthetase 100.0 1.3E-78 2.8E-83 622.1 36.6 321 74-395 1-324 (425)
5 TIGR00414 serS seryl-tRNA synt 100.0 7.7E-78 1.7E-82 615.2 36.5 321 74-395 1-326 (418)
6 KOG2509 Seryl-tRNA synthetase 100.0 1E-72 2.2E-77 561.4 26.2 323 73-395 1-340 (455)
7 cd00770 SerRS_core Seryl-tRNA 100.0 1.3E-47 2.8E-52 376.8 21.3 204 191-395 2-205 (297)
8 TIGR00415 serS_MJ seryl-tRNA s 100.0 7.6E-38 1.7E-42 321.5 19.8 189 192-391 180-402 (520)
9 PRK00960 seryl-tRNA synthetase 100.0 1.7E-37 3.7E-42 322.3 19.2 199 181-391 170-403 (517)
10 PLN02837 threonine-tRNA ligase 100.0 6.2E-36 1.3E-40 319.6 17.8 183 206-395 215-400 (614)
11 cd00771 ThrRS_core Threonyl-tR 100.0 6.5E-35 1.4E-39 286.9 19.0 180 209-395 1-182 (298)
12 PLN02908 threonyl-tRNA synthet 100.0 1.7E-33 3.7E-38 304.3 18.5 178 205-390 289-468 (686)
13 cd00778 ProRS_core_arch_euk Pr 100.0 1.4E-33 3E-38 272.6 15.2 175 210-394 6-190 (261)
14 PRK03991 threonyl-tRNA synthet 100.0 9.5E-33 2.1E-37 294.1 17.1 182 207-395 196-381 (613)
15 cd00772 ProRS_core Prolyl-tRNA 100.0 2.4E-32 5.1E-37 264.6 17.7 178 208-395 5-191 (264)
16 PRK14799 thrS threonyl-tRNA sy 100.0 5.2E-32 1.1E-36 284.8 18.7 198 186-390 104-318 (545)
17 PRK12444 threonyl-tRNA synthet 100.0 8.4E-32 1.8E-36 289.4 18.7 176 206-389 243-420 (639)
18 cd00779 ProRS_core_prok Prolyl 100.0 5.3E-32 1.2E-36 260.8 15.1 174 211-395 7-184 (255)
19 TIGR00418 thrS threonyl-tRNA s 100.0 3.3E-31 7.2E-36 280.8 18.1 183 206-395 168-353 (563)
20 PF00587 tRNA-synt_2b: tRNA sy 100.0 1.8E-30 4E-35 235.3 12.4 148 243-395 1-154 (173)
21 PRK12305 thrS threonyl-tRNA sy 100.0 1.4E-29 3E-34 269.2 17.1 182 206-394 174-358 (575)
22 PRK09194 prolyl-tRNA synthetas 100.0 2E-27 4.3E-32 252.3 19.1 177 207-395 20-200 (565)
23 PRK08661 prolyl-tRNA synthetas 100.0 1.4E-27 3E-32 248.8 16.7 179 204-394 13-201 (477)
24 TIGR00409 proS_fam_II prolyl-t 99.9 4.5E-27 9.7E-32 249.2 18.5 177 207-395 20-200 (568)
25 TIGR00408 proS_fam_I prolyl-tR 99.9 5.3E-27 1.1E-31 244.1 14.6 180 204-394 7-196 (472)
26 PRK12325 prolyl-tRNA synthetas 99.9 1.3E-26 2.9E-31 239.2 16.7 178 206-395 19-200 (439)
27 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 7.7E-26 1.7E-30 213.1 15.0 149 241-394 2-157 (235)
28 PRK00413 thrS threonyl-tRNA sy 99.9 1.2E-25 2.6E-30 241.6 17.9 176 206-389 239-418 (638)
29 COG0441 ThrS Threonyl-tRNA syn 99.9 5.4E-24 1.2E-28 224.4 13.3 178 206-390 188-368 (589)
30 KOG1637 Threonyl-tRNA syntheta 99.9 5.2E-24 1.1E-28 214.0 9.5 177 206-390 161-339 (560)
31 PRK04173 glycyl-tRNA synthetas 99.9 9.6E-23 2.1E-27 211.3 17.3 175 211-392 8-256 (456)
32 COG0442 ProS Prolyl-tRNA synth 99.9 4.1E-22 8.8E-27 206.7 13.3 177 204-392 17-197 (500)
33 PF02403 Seryl_tRNA_N: Seryl-t 99.9 3.3E-21 7.3E-26 162.5 11.4 106 74-179 1-108 (108)
34 cd00774 GlyRS-like_core Glycyl 99.8 1.1E-18 2.3E-23 168.3 11.5 164 211-392 2-177 (254)
35 CHL00201 syh histidine-tRNA sy 99.7 3.5E-17 7.5E-22 168.9 16.9 152 227-390 6-163 (430)
36 KOG2324 Prolyl-tRNA synthetase 99.7 1.3E-17 2.8E-22 163.9 11.9 174 211-395 28-206 (457)
37 COG0124 HisS Histidyl-tRNA syn 99.7 6.4E-17 1.4E-21 165.8 15.4 151 228-391 7-163 (429)
38 cd00773 HisRS-like_core Class 99.7 2.1E-15 4.5E-20 145.5 15.8 136 242-389 3-142 (261)
39 PLN02530 histidine-tRNA ligase 99.6 4.9E-15 1.1E-19 155.2 15.9 155 218-390 66-227 (487)
40 PRK00037 hisS histidyl-tRNA sy 99.6 1E-14 2.2E-19 149.2 15.6 144 228-386 7-154 (412)
41 TIGR00442 hisS histidyl-tRNA s 99.6 2.1E-14 4.6E-19 146.2 16.4 151 228-390 3-158 (397)
42 PRK12420 histidyl-tRNA synthet 99.6 4.5E-14 9.7E-19 145.4 15.5 149 228-390 7-159 (423)
43 TIGR00443 hisZ_biosyn_reg ATP 99.5 1.8E-13 3.9E-18 135.7 14.9 141 235-389 3-147 (314)
44 PRK12292 hisZ ATP phosphoribos 99.5 2.4E-13 5.2E-18 138.8 14.5 147 228-389 6-158 (391)
45 PRK12421 ATP phosphoribosyltra 99.5 6E-13 1.3E-17 136.0 15.4 147 228-390 10-162 (392)
46 cd00768 class_II_aaRS-like_cor 99.5 9.7E-13 2.1E-17 120.6 14.3 134 245-390 3-141 (211)
47 PRK12293 hisZ ATP phosphoribos 99.5 7.3E-13 1.6E-17 129.7 13.5 137 228-392 8-147 (281)
48 PRK14894 glycyl-tRNA synthetas 99.4 9.8E-13 2.1E-17 136.1 14.4 172 210-386 9-226 (539)
49 PLN02972 Histidyl-tRNA synthet 99.4 2.2E-12 4.8E-17 139.8 15.6 145 228-390 330-479 (763)
50 PRK09537 pylS pyrolysyl-tRNA s 99.4 2.2E-12 4.9E-17 131.7 14.0 134 246-392 208-342 (417)
51 KOG4163 Prolyl-tRNA synthetase 99.4 3.6E-13 7.8E-18 135.2 7.6 164 210-383 72-244 (551)
52 TIGR00389 glyS_dimeric glycyl- 99.3 7.7E-12 1.7E-16 131.9 11.9 147 211-363 7-221 (551)
53 COG0423 GRS1 Glycyl-tRNA synth 99.3 6.1E-12 1.3E-16 129.8 10.7 150 210-364 9-226 (558)
54 PF13393 tRNA-synt_His: Histid 99.3 4.9E-11 1.1E-15 117.5 15.9 145 230-390 1-150 (311)
55 PRK12295 hisZ ATP phosphoribos 99.3 3.5E-11 7.7E-16 122.3 14.3 127 245-390 8-141 (373)
56 PLN02734 glycyl-tRNA synthetas 99.3 4.9E-11 1.1E-15 128.0 15.4 173 209-386 77-378 (684)
57 TIGR02367 PylS pyrrolysyl-tRNA 99.3 5.6E-11 1.2E-15 121.7 14.9 135 245-392 243-378 (453)
58 COG3705 HisZ ATP phosphoribosy 99.1 2.5E-10 5.5E-15 115.8 9.7 144 228-390 6-156 (390)
59 PRK07080 hypothetical protein; 99.0 3.4E-09 7.4E-14 104.3 14.5 138 245-391 47-216 (317)
60 KOG1936 Histidyl-tRNA syntheta 98.8 2.5E-08 5.5E-13 100.9 9.6 144 229-389 64-213 (518)
61 PRK12294 hisZ ATP phosphoribos 98.7 1.3E-07 2.8E-12 92.4 11.6 118 244-386 10-132 (272)
62 PRK04172 pheS phenylalanyl-tRN 98.6 2.1E-07 4.6E-12 97.9 12.2 140 234-389 226-408 (489)
63 PTZ00326 phenylalanyl-tRNA syn 98.5 1.9E-06 4.1E-11 90.2 13.3 138 236-386 224-411 (494)
64 cd00669 Asp_Lys_Asn_RS_core As 98.3 1.2E-05 2.6E-10 78.5 13.1 109 243-374 3-116 (269)
65 PRK09350 poxB regulator PoxA; 98.2 3.8E-06 8.3E-11 83.4 7.2 101 242-360 6-110 (306)
66 cd00776 AsxRS_core Asx tRNA sy 98.0 3.7E-05 8E-10 77.0 11.4 111 241-374 24-138 (322)
67 PRK00488 pheS phenylalanyl-tRN 98.0 0.0018 3.9E-08 65.3 22.1 120 245-383 111-236 (339)
68 KOG2298 Glycyl-tRNA synthetase 98.0 3.6E-06 7.8E-11 86.4 2.9 138 228-372 35-257 (599)
69 PF01409 tRNA-synt_2d: tRNA sy 98.0 0.00013 2.8E-09 70.5 13.1 128 245-386 20-157 (247)
70 COG0173 AspS Aspartyl-tRNA syn 97.9 6.9E-05 1.5E-09 78.7 10.9 116 241-379 141-261 (585)
71 TIGR00459 aspS_bact aspartyl-t 97.9 0.00011 2.3E-09 79.0 12.3 117 241-376 138-255 (583)
72 PF00152 tRNA-synt_2: tRNA syn 97.9 0.00016 3.5E-09 72.4 12.8 117 240-378 21-145 (335)
73 TIGR00468 pheS phenylalanyl-tR 97.8 0.00031 6.7E-09 69.5 13.8 125 245-386 75-204 (294)
74 COG0016 PheS Phenylalanyl-tRNA 97.8 0.00023 5E-09 71.3 12.9 134 235-384 105-244 (335)
75 TIGR00458 aspS_arch aspartyl-t 97.8 0.00011 2.3E-09 76.5 10.8 112 241-374 133-247 (428)
76 PLN02903 aminoacyl-tRNA ligase 97.8 0.00011 2.3E-09 79.6 10.2 116 240-374 202-319 (652)
77 PRK05159 aspC aspartyl-tRNA sy 97.8 9.6E-05 2.1E-09 77.0 9.1 113 241-375 136-252 (437)
78 PRK06462 asparagine synthetase 97.7 0.00017 3.7E-09 72.7 10.2 118 241-374 30-152 (335)
79 cd00775 LysRS_core Lys_tRNA sy 97.7 0.00025 5.4E-09 71.3 11.2 111 241-374 8-123 (329)
80 PRK03932 asnC asparaginyl-tRNA 97.7 0.00021 4.4E-09 74.8 10.4 113 239-374 131-255 (450)
81 cd00777 AspRS_core Asp tRNA sy 97.7 0.00012 2.7E-09 71.9 8.0 112 243-374 3-116 (280)
82 PRK00484 lysS lysyl-tRNA synth 97.7 0.00037 7.9E-09 73.7 11.8 114 239-375 170-288 (491)
83 TIGR00462 genX lysyl-tRNA synt 97.6 0.00013 2.9E-09 72.4 7.6 124 243-391 3-134 (304)
84 TIGR00457 asnS asparaginyl-tRN 97.6 0.00031 6.7E-09 73.5 10.4 113 239-374 134-258 (453)
85 cd00496 PheRS_alpha_core Pheny 97.6 0.0018 4E-08 61.1 14.6 123 246-384 5-132 (218)
86 PRK00476 aspS aspartyl-tRNA sy 97.6 0.00031 6.7E-09 75.7 10.4 115 240-374 140-256 (588)
87 PRK12820 bifunctional aspartyl 97.6 0.00023 5E-09 77.8 8.6 115 240-375 155-272 (706)
88 PLN02853 Probable phenylalanyl 97.5 0.0014 3E-08 68.9 13.4 129 245-385 224-395 (492)
89 TIGR00499 lysS_bact lysyl-tRNA 97.5 0.00024 5.1E-09 75.2 7.8 114 240-376 171-289 (496)
90 PLN02502 lysyl-tRNA synthetase 97.5 0.00032 7E-09 75.0 8.7 116 240-375 228-345 (553)
91 PTZ00385 lysyl-tRNA synthetase 97.5 0.00042 9.1E-09 75.2 9.5 112 240-374 232-348 (659)
92 PRK12445 lysyl-tRNA synthetase 97.5 0.00041 8.9E-09 73.5 9.2 117 240-375 183-300 (505)
93 PTZ00417 lysine-tRNA ligase; P 97.5 0.0004 8.6E-09 74.7 9.1 115 240-374 252-368 (585)
94 PTZ00425 asparagine-tRNA ligas 97.4 0.0018 3.9E-08 69.6 13.0 35 238-272 212-246 (586)
95 PLN02850 aspartate-tRNA ligase 97.4 0.00049 1.1E-08 73.3 8.7 113 240-374 224-340 (530)
96 PTZ00401 aspartyl-tRNA synthet 97.4 0.00037 8E-09 74.5 7.5 113 240-374 212-328 (550)
97 PLN02221 asparaginyl-tRNA synt 97.4 0.002 4.3E-08 69.2 12.5 34 239-272 169-202 (572)
98 PLN02532 asparagine-tRNA synth 97.2 0.0021 4.6E-08 69.6 11.3 48 323-376 391-439 (633)
99 KOG2411 Aspartyl-tRNA syntheta 97.2 0.00062 1.4E-08 70.7 6.5 113 241-376 178-296 (628)
100 COG0017 AsnS Aspartyl/asparagi 97.2 0.0029 6.2E-08 65.6 10.9 114 239-375 132-248 (435)
101 PLN02603 asparaginyl-tRNA synt 97.1 0.0042 9.1E-08 66.7 12.1 113 238-373 223-368 (565)
102 PRK02983 lysS lysyl-tRNA synth 97.1 0.0015 3.3E-08 75.1 8.4 112 240-374 769-885 (1094)
103 PRK09616 pheT phenylalanyl-tRN 96.2 0.071 1.5E-06 57.3 13.6 129 245-389 362-495 (552)
104 TIGR00470 sepS O-phosphoseryl- 95.9 0.017 3.7E-07 60.4 6.8 60 317-386 203-262 (533)
105 KOG0554 Asparaginyl-tRNA synth 95.8 0.032 7E-07 56.9 8.0 100 236-358 127-236 (446)
106 COG2269 Truncated, possibly in 95.3 0.031 6.7E-07 54.9 5.7 100 244-360 19-121 (322)
107 COG1190 LysU Lysyl-tRNA synthe 95.2 0.049 1.1E-06 57.2 7.2 113 244-382 183-296 (502)
108 PLN02788 phenylalanine-tRNA sy 94.4 0.49 1.1E-05 49.0 11.8 123 246-385 72-213 (402)
109 cd00769 PheRS_beta_core Phenyl 93.7 0.5 1.1E-05 43.7 9.7 126 246-386 4-140 (198)
110 KOG0555 Asparaginyl-tRNA synth 92.6 0.26 5.6E-06 50.6 6.2 90 244-358 246-339 (545)
111 KOG1885 Lysyl-tRNA synthetase 92.1 0.096 2.1E-06 54.6 2.6 114 243-382 227-341 (560)
112 COG1579 Zn-ribbon protein, pos 91.9 1.8 3.8E-05 41.9 10.7 68 102-169 53-120 (239)
113 TIGR00471 pheT_arch phenylalan 91.7 2.3 4.9E-05 45.9 12.5 128 245-389 365-497 (551)
114 PF07106 TBPIP: Tat binding pr 91.6 1.1 2.3E-05 40.6 8.6 67 99-165 70-136 (169)
115 TIGR03752 conj_TIGR03752 integ 91.4 1.1 2.5E-05 47.0 9.5 84 101-186 73-156 (472)
116 COG2024 Phenylalanyl-tRNA synt 90.4 0.19 4.1E-06 51.3 2.6 66 313-388 199-265 (536)
117 KOG0556 Aspartyl-tRNA syntheta 90.2 0.48 1E-05 48.8 5.3 94 242-357 229-324 (533)
118 TIGR00469 pheS_mito phenylalan 86.6 5.7 0.00012 41.9 10.5 105 244-360 48-165 (460)
119 PF12325 TMF_TATA_bd: TATA ele 85.7 10 0.00022 32.9 10.0 66 102-173 24-89 (120)
120 KOG2784 Phenylalanyl-tRNA synt 85.2 1 2.2E-05 46.0 4.0 126 246-386 216-387 (483)
121 PRK10884 SH3 domain-containing 84.7 5.9 0.00013 37.4 8.8 68 101-168 93-162 (206)
122 COG4026 Uncharacterized protei 83.8 11 0.00023 36.2 9.9 54 74-130 102-157 (290)
123 PLN02265 probable phenylalanyl 82.8 10 0.00022 41.3 10.9 126 245-386 400-531 (597)
124 PF03962 Mnd1: Mnd1 family; I 82.1 12 0.00025 34.9 9.5 64 101-164 62-129 (188)
125 COG3883 Uncharacterized protei 81.1 11 0.00023 37.1 9.2 70 103-174 40-109 (265)
126 PF13870 DUF4201: Domain of un 81.0 15 0.00033 33.4 9.8 41 143-183 103-143 (177)
127 PF11932 DUF3450: Protein of u 80.2 8.5 0.00018 37.1 8.3 79 101-188 49-127 (251)
128 PF05278 PEARLI-4: Arabidopsis 79.9 15 0.00032 36.2 9.7 88 75-171 166-254 (269)
129 PF10805 DUF2730: Protein of u 76.8 25 0.00055 29.5 9.2 58 115-172 42-99 (106)
130 PF05529 Bap31: B-cell recepto 75.5 22 0.00047 32.7 9.2 70 100-170 117-186 (192)
131 PRK11637 AmiB activator; Provi 75.1 15 0.00033 38.1 9.0 33 141-173 99-131 (428)
132 KOG2264 Exostosin EXT1L [Signa 75.0 26 0.00056 38.0 10.4 138 101-267 93-235 (907)
133 PHA03386 P10 fibrous body prot 74.3 16 0.00035 30.2 6.9 67 100-188 11-77 (94)
134 PF07106 TBPIP: Tat binding pr 74.3 16 0.00035 33.0 7.9 93 85-177 4-111 (169)
135 PRK05892 nucleoside diphosphat 73.8 13 0.00028 33.6 7.0 25 109-133 12-36 (158)
136 PF14257 DUF4349: Domain of un 73.5 17 0.00038 35.0 8.4 62 106-167 130-191 (262)
137 KOG4196 bZIP transcription fac 72.9 66 0.0014 28.3 10.7 75 98-175 44-118 (135)
138 PF04420 CHD5: CHD5-like prote 72.3 13 0.00028 33.6 6.7 61 105-169 37-97 (161)
139 COG1579 Zn-ribbon protein, pos 71.6 47 0.001 32.2 10.6 68 108-177 89-156 (239)
140 TIGR03185 DNA_S_dndD DNA sulfu 71.6 26 0.00056 38.5 10.1 61 108-168 391-451 (650)
141 COG1340 Uncharacterized archae 71.5 26 0.00056 34.9 9.0 70 101-170 20-94 (294)
142 COG0216 PrfA Protein chain rel 70.0 75 0.0016 32.4 11.9 24 150-173 81-104 (363)
143 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.2 38 0.00082 29.4 8.8 70 99-168 57-128 (132)
144 PF10146 zf-C4H2: Zinc finger- 68.1 54 0.0012 31.6 10.2 61 105-174 43-103 (230)
145 COG0072 PheT Phenylalanyl-tRNA 67.6 14 0.00031 40.7 7.0 135 245-391 354-495 (650)
146 PF10458 Val_tRNA-synt_C: Valy 66.8 53 0.0011 25.0 8.1 57 106-162 2-63 (66)
147 PF00435 Spectrin: Spectrin re 66.6 58 0.0013 25.2 10.6 82 85-166 18-101 (105)
148 PRK06253 O-phosphoseryl-tRNA s 66.3 16 0.00034 39.3 6.7 84 295-389 183-267 (529)
149 TIGR02894 DNA_bind_RsfA transc 65.6 59 0.0013 29.6 9.3 63 98-169 80-142 (161)
150 PF12329 TMF_DNA_bd: TATA elem 64.4 68 0.0015 25.2 8.9 64 102-167 6-69 (74)
151 PRK10884 SH3 domain-containing 64.2 47 0.001 31.4 8.9 25 106-130 91-115 (206)
152 PRK11637 AmiB activator; Provi 64.1 36 0.00079 35.3 9.0 31 140-170 105-135 (428)
153 KOG4603 TBP-1 interacting prot 63.0 55 0.0012 30.2 8.6 58 102-166 87-144 (201)
154 PF09789 DUF2353: Uncharacteri 62.9 73 0.0016 32.2 10.4 70 103-172 74-160 (319)
155 TIGR02231 conserved hypothetic 62.8 37 0.00081 36.2 9.0 31 101-131 71-101 (525)
156 PF10146 zf-C4H2: Zinc finger- 62.6 67 0.0014 30.9 9.7 29 143-171 51-79 (230)
157 PF03961 DUF342: Protein of un 62.5 40 0.00086 35.3 9.0 69 103-171 336-408 (451)
158 PF14389 Lzipper-MIP1: Leucine 62.4 84 0.0018 25.6 9.6 68 103-170 10-86 (88)
159 PF03449 GreA_GreB_N: Transcri 61.3 65 0.0014 25.4 7.9 54 109-162 10-70 (74)
160 PF05531 NPV_P10: Nucleopolyhe 60.7 42 0.00091 26.8 6.6 23 101-123 11-33 (75)
161 PF05529 Bap31: B-cell recepto 60.4 42 0.00092 30.8 7.8 65 110-175 120-184 (192)
162 COG1340 Uncharacterized archae 60.4 54 0.0012 32.7 8.8 33 100-132 5-37 (294)
163 CHL00192 syfB phenylalanyl-tRN 57.4 60 0.0013 36.3 9.6 124 245-389 401-536 (704)
164 PF08317 Spc7: Spc7 kinetochor 56.9 76 0.0017 31.8 9.5 37 137-173 208-244 (325)
165 smart00787 Spc7 Spc7 kinetocho 56.9 80 0.0017 31.7 9.6 32 139-170 205-236 (312)
166 PRK00629 pheT phenylalanyl-tRN 56.5 64 0.0014 36.5 9.8 126 245-386 490-625 (791)
167 COG4942 Membrane-bound metallo 56.1 74 0.0016 33.4 9.3 58 102-161 53-110 (420)
168 PF13870 DUF4201: Domain of un 55.8 1.3E+02 0.0029 27.1 10.2 30 139-168 146-175 (177)
169 KOG0804 Cytoplasmic Zn-finger 55.7 91 0.002 32.9 9.8 35 143-177 419-453 (493)
170 COG3883 Uncharacterized protei 54.4 85 0.0018 30.9 9.0 14 144-157 86-99 (265)
171 KOG2629 Peroxisomal membrane a 54.1 90 0.0019 31.1 9.1 96 86-186 103-205 (300)
172 PF11932 DUF3450: Protein of u 53.8 1.2E+02 0.0026 29.1 10.0 60 102-170 43-102 (251)
173 PF10018 Med4: Vitamin-D-recep 53.6 1.2E+02 0.0027 27.8 9.7 59 101-172 5-63 (188)
174 TIGR03185 DNA_S_dndD DNA sulfu 53.5 69 0.0015 35.2 9.3 27 146-172 263-289 (650)
175 TIGR00472 pheT_bact phenylalan 53.1 75 0.0016 35.9 9.7 124 249-386 498-632 (798)
176 PF09304 Cortex-I_coil: Cortex 52.7 1.5E+02 0.0032 25.3 9.1 16 113-128 42-57 (107)
177 PF02091 tRNA-synt_2e: Glycyl- 52.6 22 0.00047 35.0 4.5 60 317-386 41-100 (284)
178 PF14282 FlxA: FlxA-like prote 51.7 68 0.0015 26.9 7.0 61 107-172 18-78 (106)
179 PF12718 Tropomyosin_1: Tropom 51.0 1.2E+02 0.0025 27.0 8.7 22 149-170 77-98 (143)
180 PLN02943 aminoacyl-tRNA ligase 50.7 46 0.00099 38.5 7.6 34 100-133 881-914 (958)
181 PF10498 IFT57: Intra-flagella 50.1 76 0.0016 32.6 8.3 12 75-86 213-224 (359)
182 PF04156 IncA: IncA protein; 49.8 1.4E+02 0.0029 27.2 9.3 27 103-129 83-109 (191)
183 PF15188 CCDC-167: Coiled-coil 49.7 1.4E+02 0.0031 24.4 8.1 44 125-168 22-66 (85)
184 PRK13729 conjugal transfer pil 49.6 1E+02 0.0022 32.8 9.2 29 102-130 70-98 (475)
185 PF08317 Spc7: Spc7 kinetochor 49.5 1.3E+02 0.0028 30.2 9.8 24 105-128 181-204 (325)
186 COG2433 Uncharacterized conser 49.4 1.2E+02 0.0025 33.4 9.7 32 140-171 476-507 (652)
187 PF00038 Filament: Intermediat 48.6 1.1E+02 0.0025 29.9 9.2 23 109-131 224-246 (312)
188 PF06005 DUF904: Protein of un 48.6 1.3E+02 0.0029 23.6 10.1 26 148-173 42-67 (72)
189 PF08614 ATG16: Autophagy prot 48.5 70 0.0015 29.6 7.2 88 85-172 81-178 (194)
190 PF13851 GAS: Growth-arrest sp 48.2 1.9E+02 0.0041 27.1 10.1 22 109-130 56-77 (201)
191 PF05008 V-SNARE: Vesicle tran 48.1 1.3E+02 0.0028 23.3 7.8 51 111-162 28-78 (79)
192 PF03233 Cauli_AT: Aphid trans 47.5 1.7E+02 0.0037 26.8 9.1 58 101-171 104-161 (163)
193 PRK01885 greB transcription el 47.2 53 0.0011 29.6 6.0 25 109-133 11-36 (157)
194 PTZ00419 valyl-tRNA synthetase 47.2 51 0.0011 38.2 7.3 66 100-165 921-991 (995)
195 PF10158 LOH1CR12: Tumour supp 46.5 2E+02 0.0044 25.2 9.4 57 68-133 3-60 (131)
196 KOG0250 DNA repair protein RAD 46.0 1E+02 0.0023 35.8 9.2 28 143-170 399-426 (1074)
197 PF07798 DUF1640: Protein of u 46.0 1.2E+02 0.0026 27.6 8.3 23 149-171 117-139 (177)
198 PF06810 Phage_GP20: Phage min 45.8 1.2E+02 0.0027 27.2 8.1 44 113-156 25-69 (155)
199 PF01920 Prefoldin_2: Prefoldi 45.8 1.6E+02 0.0034 23.7 11.0 71 101-171 5-95 (106)
200 PHA02562 46 endonuclease subun 45.5 85 0.0018 33.3 8.3 25 101-125 299-323 (562)
201 PF04420 CHD5: CHD5-like prote 45.4 1.1E+02 0.0024 27.5 7.8 56 111-170 36-91 (161)
202 PF03962 Mnd1: Mnd1 family; I 45.3 1.9E+02 0.0041 26.8 9.5 54 108-161 103-158 (188)
203 PF10186 Atg14: UV radiation r 45.2 2.5E+02 0.0054 26.9 10.9 38 141-178 122-159 (302)
204 cd00733 GlyRS_alpha_core Class 45.1 32 0.0007 33.6 4.4 60 318-387 43-102 (279)
205 PF12329 TMF_DNA_bd: TATA elem 45.0 1.5E+02 0.0033 23.3 8.5 55 106-169 3-57 (74)
206 KOG2391 Vacuolar sorting prote 44.7 1.4E+02 0.0031 30.4 9.0 72 110-183 220-291 (365)
207 PF14644 DUF4456: Domain of un 44.2 1.5E+02 0.0033 27.7 8.8 40 141-182 84-123 (208)
208 PF11285 DUF3086: Protein of u 44.2 1.6E+02 0.0036 28.9 9.0 53 101-154 4-56 (283)
209 PF08581 Tup_N: Tup N-terminal 43.7 1.7E+02 0.0037 23.5 9.8 35 141-175 35-69 (79)
210 PF14335 DUF4391: Domain of un 43.3 69 0.0015 30.3 6.4 55 69-123 128-197 (221)
211 PRK10636 putative ABC transpor 43.3 1.7E+02 0.0036 32.2 10.2 63 110-172 565-632 (638)
212 PF06810 Phage_GP20: Phage min 43.2 1.1E+02 0.0023 27.6 7.3 61 100-162 4-68 (155)
213 PF06008 Laminin_I: Laminin Do 42.9 1.6E+02 0.0034 28.5 9.0 91 78-170 20-112 (264)
214 PF04728 LPP: Lipoprotein leuc 42.9 1.4E+02 0.0031 22.4 8.0 26 147-172 26-51 (56)
215 COG4985 ABC-type phosphate tra 42.9 1.1E+02 0.0024 29.6 7.6 42 133-174 209-250 (289)
216 PF04380 BMFP: Membrane fusoge 42.5 87 0.0019 24.9 5.9 30 137-166 49-78 (79)
217 TIGR00388 glyQ glycyl-tRNA syn 42.5 39 0.00085 33.3 4.6 59 318-386 44-102 (293)
218 PF09340 NuA4: Histone acetylt 42.4 55 0.0012 26.2 4.8 30 141-170 5-34 (80)
219 TIGR01462 greA transcription e 42.4 43 0.00094 29.7 4.6 24 110-133 7-31 (151)
220 KOG1962 B-cell receptor-associ 42.0 1.7E+02 0.0036 28.0 8.6 29 143-171 156-184 (216)
221 PF12718 Tropomyosin_1: Tropom 41.6 2.2E+02 0.0048 25.2 9.0 68 103-170 37-105 (143)
222 TIGR01461 greB transcription e 41.4 70 0.0015 28.8 5.8 59 110-170 10-70 (156)
223 PRK11546 zraP zinc resistance 41.3 2.6E+02 0.0057 25.0 9.5 63 110-187 63-125 (143)
224 PRK05729 valS valyl-tRNA synth 41.0 52 0.0011 37.6 6.1 34 100-133 803-836 (874)
225 PRK09348 glyQ glycyl-tRNA synt 40.9 37 0.00081 33.3 4.1 59 318-386 47-105 (283)
226 TIGR01554 major_cap_HK97 phage 40.9 79 0.0017 32.1 6.9 27 142-168 31-57 (378)
227 COG5185 HEC1 Protein involved 40.4 1.8E+02 0.0039 31.1 9.2 22 149-170 334-355 (622)
228 PF14662 CCDC155: Coiled-coil 40.1 1.9E+02 0.0041 27.2 8.5 27 143-169 86-112 (193)
229 COG5185 HEC1 Protein involved 40.0 2.5E+02 0.0054 30.1 10.1 53 77-131 346-398 (622)
230 PF09789 DUF2353: Uncharacteri 40.0 2.5E+02 0.0053 28.5 9.9 36 138-173 189-224 (319)
231 PTZ00464 SNF-7-like protein; P 40.0 2.9E+02 0.0063 26.2 10.0 32 101-132 18-49 (211)
232 smart00787 Spc7 Spc7 kinetocho 39.9 2.3E+02 0.005 28.5 9.8 25 104-128 175-199 (312)
233 PF09325 Vps5: Vps5 C terminal 39.7 2.9E+02 0.0062 25.6 10.1 23 148-170 166-188 (236)
234 COG1382 GimC Prefoldin, chaper 39.5 2.6E+02 0.0055 24.3 8.8 42 141-182 73-114 (119)
235 PF12761 End3: Actin cytoskele 39.0 1.8E+02 0.004 27.3 8.3 35 137-171 159-193 (195)
236 PF04977 DivIC: Septum formati 39.0 1E+02 0.0022 23.5 5.8 29 103-131 19-47 (80)
237 KOG1962 B-cell receptor-associ 39.0 1.4E+02 0.0029 28.6 7.5 15 68-82 82-96 (216)
238 PF06005 DUF904: Protein of un 38.9 1.9E+02 0.0041 22.7 9.8 53 108-169 18-70 (72)
239 PF04111 APG6: Autophagy prote 38.9 1.7E+02 0.0037 29.4 8.7 33 101-133 50-82 (314)
240 PRK15396 murein lipoprotein; P 38.7 2.1E+02 0.0045 23.0 7.5 19 152-170 53-71 (78)
241 COG3937 Uncharacterized conser 38.6 2.5E+02 0.0053 24.0 8.1 23 146-168 84-106 (108)
242 PF07851 TMPIT: TMPIT-like pro 38.5 2.1E+02 0.0045 29.1 9.2 27 105-131 15-41 (330)
243 PRK09343 prefoldin subunit bet 38.3 2.6E+02 0.0055 24.0 9.4 31 141-171 74-104 (121)
244 PHA02562 46 endonuclease subun 38.2 1.7E+02 0.0036 31.2 9.1 26 107-132 173-198 (562)
245 KOG4657 Uncharacterized conser 38.1 2.3E+02 0.0049 27.4 8.8 18 143-160 91-108 (246)
246 TIGR03545 conserved hypothetic 38.0 2.2E+02 0.0049 31.0 10.0 62 116-179 192-260 (555)
247 PF04111 APG6: Autophagy prote 37.7 2.4E+02 0.0052 28.3 9.6 28 101-128 64-91 (314)
248 PF05082 Rop-like: Rop-like; 37.6 95 0.0021 24.2 5.1 32 146-177 3-34 (66)
249 PF10186 Atg14: UV radiation r 37.5 2.2E+02 0.0048 27.2 9.2 15 374-388 266-280 (302)
250 PF09738 DUF2051: Double stran 37.4 1.6E+02 0.0035 29.5 8.2 65 104-168 101-170 (302)
251 PF06160 EzrA: Septation ring 37.3 3.1E+02 0.0067 29.7 11.0 17 100-116 343-359 (560)
252 KOG3863 bZIP transcription fac 37.2 81 0.0018 34.5 6.4 58 73-130 468-540 (604)
253 KOG0995 Centromere-associated 37.1 4.6E+02 0.0099 28.7 11.8 23 152-174 371-393 (581)
254 PF04977 DivIC: Septum formati 36.9 1.1E+02 0.0024 23.4 5.6 13 145-157 38-50 (80)
255 PF03148 Tektin: Tektin family 36.9 3E+02 0.0064 28.4 10.3 33 142-174 321-353 (384)
256 TIGR03683 A-tRNA_syn_arch alan 36.8 1.8E+02 0.0039 33.6 9.5 114 246-386 60-176 (902)
257 PF15070 GOLGA2L5: Putative go 36.7 1.3E+02 0.0029 33.1 8.1 73 115-187 4-78 (617)
258 PF10211 Ax_dynein_light: Axon 36.7 2.6E+02 0.0056 25.9 9.0 22 147-168 165-186 (189)
259 PRK04778 septation ring format 36.6 1.8E+02 0.004 31.4 9.2 20 112-131 352-371 (569)
260 KOG2129 Uncharacterized conser 36.5 2.9E+02 0.0062 29.2 9.8 59 111-169 204-277 (552)
261 PF07334 IFP_35_N: Interferon- 36.4 84 0.0018 25.1 4.8 26 142-167 4-29 (76)
262 PRK13902 alaS alanyl-tRNA synt 36.2 1.7E+02 0.0037 33.8 9.1 114 246-386 63-180 (900)
263 PRK10869 recombination and rep 36.1 1.7E+02 0.0038 31.6 8.8 15 117-131 319-333 (553)
264 COG4026 Uncharacterized protei 36.0 2.8E+02 0.0061 26.8 9.0 25 143-167 161-185 (290)
265 COG4942 Membrane-bound metallo 35.7 2.5E+02 0.0054 29.6 9.4 16 108-123 66-81 (420)
266 PRK03918 chromosome segregatio 35.7 2.1E+02 0.0045 32.3 9.8 29 140-168 661-689 (880)
267 KOG2829 E2F-like protein [Tran 35.3 88 0.0019 31.2 5.8 17 205-221 220-236 (326)
268 PF14257 DUF4349: Domain of un 35.3 1.2E+02 0.0026 29.2 6.8 85 76-162 106-193 (262)
269 PF05266 DUF724: Protein of un 35.1 3.7E+02 0.008 25.0 9.7 33 89-121 79-116 (190)
270 PF05531 NPV_P10: Nucleopolyhe 34.6 2.4E+02 0.0051 22.5 9.5 55 106-166 9-63 (75)
271 PF05103 DivIVA: DivIVA protei 34.4 26 0.00056 29.8 1.8 39 94-132 16-56 (131)
272 KOG2264 Exostosin EXT1L [Signa 34.2 1.7E+02 0.0037 32.0 8.1 51 74-127 81-133 (907)
273 PRK09039 hypothetical protein; 34.2 1.9E+02 0.0041 29.4 8.3 17 113-129 142-158 (343)
274 PF10168 Nup88: Nuclear pore c 34.2 2E+02 0.0044 32.3 9.1 37 139-175 587-623 (717)
275 PF00170 bZIP_1: bZIP transcri 33.8 1.7E+02 0.0037 21.8 6.1 15 149-163 44-58 (64)
276 COG3167 PilO Tfp pilus assembl 33.7 83 0.0018 29.6 5.0 56 111-179 45-100 (211)
277 TIGR00020 prfB peptide chain r 33.6 3.2E+02 0.0069 28.2 9.8 50 72-121 20-69 (364)
278 PRK11546 zraP zinc resistance 33.5 2.4E+02 0.0053 25.2 7.8 19 153-171 90-108 (143)
279 PF04645 DUF603: Protein of un 33.5 2.4E+02 0.0053 26.0 7.9 57 109-169 106-162 (181)
280 cd07596 BAR_SNX The Bin/Amphip 33.0 3.7E+02 0.0079 24.2 10.9 30 140-169 147-176 (218)
281 PF14723 SSFA2_C: Sperm-specif 32.9 3.4E+02 0.0075 25.1 8.8 86 78-163 65-170 (179)
282 PRK00578 prfB peptide chain re 32.9 3.2E+02 0.0069 28.2 9.7 49 72-120 20-68 (367)
283 KOG0999 Microtubule-associated 32.6 1.7E+02 0.0036 31.9 7.7 85 100-184 106-195 (772)
284 PF07798 DUF1640: Protein of u 32.5 3.6E+02 0.0079 24.4 9.2 11 82-92 34-44 (177)
285 PF08614 ATG16: Autophagy prot 32.4 1.6E+02 0.0034 27.2 6.9 27 140-166 153-179 (194)
286 KOG0971 Microtubule-associated 32.3 3.6E+02 0.0078 31.3 10.4 30 140-169 412-441 (1243)
287 PF11180 DUF2968: Protein of u 32.0 2.2E+02 0.0047 26.8 7.5 28 143-170 152-179 (192)
288 PF03938 OmpH: Outer membrane 31.2 3.5E+02 0.0076 23.5 9.2 50 71-132 18-67 (158)
289 KOG4674 Uncharacterized conser 31.0 4.7E+02 0.01 32.6 11.8 90 77-171 1224-1340(1822)
290 PRK12704 phosphodiesterase; Pr 31.0 1.8E+02 0.0039 31.4 7.8 37 147-183 119-155 (520)
291 PRK02224 chromosome segregatio 31.0 2.4E+02 0.0053 31.9 9.4 14 111-124 209-222 (880)
292 KOG3229 Vacuolar sorting prote 30.9 2.1E+02 0.0046 27.2 7.3 35 106-140 23-57 (227)
293 TIGR02338 gimC_beta prefoldin, 30.8 3.2E+02 0.0068 22.8 10.5 30 141-170 70-99 (110)
294 cd04776 HTH_GnyR Helix-Turn-He 30.8 2.6E+02 0.0057 23.6 7.4 14 150-163 92-105 (118)
295 TIGR00634 recN DNA repair prot 30.8 5.3E+02 0.012 27.8 11.5 45 116-160 323-368 (563)
296 KOG1029 Endocytic adaptor prot 30.7 2.9E+02 0.0063 31.5 9.2 62 103-164 432-505 (1118)
297 PF00846 Hanta_nucleocap: Hant 30.6 3E+02 0.0066 28.7 8.9 83 103-191 4-88 (428)
298 PF07889 DUF1664: Protein of u 30.5 3.7E+02 0.008 23.5 9.5 31 140-170 91-121 (126)
299 PF02388 FemAB: FemAB family; 30.4 2E+02 0.0043 29.8 7.9 25 143-167 271-295 (406)
300 cd00632 Prefoldin_beta Prefold 30.2 3.1E+02 0.0068 22.5 9.7 33 141-173 66-98 (105)
301 PF09602 PhaP_Bmeg: Polyhydrox 30.1 4E+02 0.0088 24.4 8.7 60 113-173 46-106 (165)
302 PF09766 FimP: Fms-interacting 30.0 2.3E+02 0.0049 29.0 8.1 50 108-166 101-150 (355)
303 PRK13729 conjugal transfer pil 30.0 1.7E+02 0.0037 31.2 7.3 26 145-170 97-122 (475)
304 TIGR00606 rad50 rad50. This fa 30.0 2.4E+02 0.0052 33.8 9.4 9 354-362 1224-1232(1311)
305 KOG4196 bZIP transcription fac 29.7 1.2E+02 0.0027 26.7 5.1 64 88-169 56-119 (135)
306 PF04880 NUDE_C: NUDE protein, 29.7 87 0.0019 28.7 4.5 29 139-168 25-53 (166)
307 smart00338 BRLZ basic region l 29.6 1.7E+02 0.0037 21.9 5.5 15 150-164 38-52 (65)
308 TIGR03752 conj_TIGR03752 integ 29.5 3E+02 0.0065 29.4 8.9 80 101-180 59-144 (472)
309 PF08657 DASH_Spc34: DASH comp 29.4 2E+02 0.0044 28.1 7.3 33 100-132 179-211 (259)
310 PF12128 DUF3584: Protein of u 29.1 3.3E+02 0.0072 32.4 10.3 31 98-128 768-798 (1201)
311 PLN02381 valyl-tRNA synthetase 28.9 1.5E+02 0.0032 34.9 7.2 33 101-133 990-1022(1066)
312 TIGR03319 YmdA_YtgF conserved 28.9 2E+02 0.0044 30.9 7.8 37 147-183 113-149 (514)
313 PLN02452 phosphoserine transam 28.9 3.9E+02 0.0084 27.2 9.6 110 141-257 249-363 (365)
314 PF07200 Mod_r: Modifier of ru 28.7 3.5E+02 0.0077 23.5 8.2 82 75-171 7-88 (150)
315 PRK11020 hypothetical protein; 28.6 3.9E+02 0.0084 23.1 8.4 40 141-183 34-73 (118)
316 PRK05589 peptide chain release 28.4 4E+02 0.0087 27.0 9.4 38 81-121 7-44 (325)
317 PF10359 Fmp27_WPPW: RNA pol I 28.4 2.5E+02 0.0054 29.8 8.3 58 113-170 168-225 (475)
318 PHA01750 hypothetical protein 28.2 1.1E+02 0.0023 23.9 4.0 22 143-164 47-68 (75)
319 KOG2910 Uncharacterized conser 28.2 5.2E+02 0.011 24.4 11.9 31 156-187 153-185 (209)
320 cd00176 SPEC Spectrin repeats, 28.2 4E+02 0.0087 23.2 11.2 45 85-129 17-61 (213)
321 PF10376 Mei5: Double-strand r 28.1 5.2E+02 0.011 24.7 9.7 25 104-128 134-158 (221)
322 PRK01156 chromosome segregatio 28.0 3E+02 0.0065 31.3 9.5 44 143-186 414-458 (895)
323 PF01166 TSC22: TSC-22/dip/bun 27.9 1.1E+02 0.0023 23.3 3.9 35 144-178 13-47 (59)
324 KOG1655 Protein involved in va 27.9 4.8E+02 0.01 24.7 9.0 60 106-165 24-83 (218)
325 PF13851 GAS: Growth-arrest sp 27.8 4.6E+02 0.01 24.5 9.2 11 112-122 66-76 (201)
326 PF05700 BCAS2: Breast carcino 27.4 4.3E+02 0.0093 25.0 9.0 29 104-132 146-174 (221)
327 KOG0995 Centromere-associated 27.2 4.8E+02 0.01 28.6 10.0 21 143-163 344-364 (581)
328 PF11336 DUF3138: Protein of u 27.1 1.5E+02 0.0033 31.2 6.2 25 145-169 83-107 (514)
329 KOG4460 Nuclear pore complex, 27.0 4.6E+02 0.0099 28.7 9.7 81 77-173 561-644 (741)
330 KOG0979 Structural maintenance 27.0 4.1E+02 0.009 31.0 9.9 43 146-188 326-368 (1072)
331 KOG1419 Voltage-gated K+ chann 26.8 8.9E+02 0.019 26.7 12.1 117 98-224 515-641 (654)
332 KOG0964 Structural maintenance 26.7 3.6E+02 0.0079 31.5 9.3 54 78-131 681-736 (1200)
333 COG0216 PrfA Protein chain rel 26.5 2.3E+02 0.0049 29.1 7.1 107 77-194 9-116 (363)
334 PRK14900 valS valyl-tRNA synth 26.3 1.5E+02 0.0033 34.7 6.8 65 100-164 834-903 (1052)
335 PF13949 ALIX_LYPXL_bnd: ALIX 26.3 4.4E+02 0.0096 25.4 9.2 32 104-135 140-171 (296)
336 TIGR01834 PHA_synth_III_E poly 26.2 5.8E+02 0.013 25.9 10.0 29 138-166 289-317 (320)
337 KOG2685 Cystoskeletal protein 26.2 7.8E+02 0.017 25.9 11.1 65 107-171 291-377 (421)
338 PF12999 PRKCSH-like: Glucosid 26.0 3.8E+02 0.0082 24.8 8.0 13 20-32 19-31 (176)
339 KOG0288 WD40 repeat protein Ti 25.9 2.7E+02 0.0058 29.3 7.6 14 141-154 58-71 (459)
340 TIGR02169 SMC_prok_A chromosom 25.8 3.4E+02 0.0074 31.4 9.5 8 356-363 1129-1136(1164)
341 PF10234 Cluap1: Clusterin-ass 25.8 4.4E+02 0.0096 26.0 8.9 32 104-135 172-203 (267)
342 COG4372 Uncharacterized protei 25.7 3E+02 0.0064 28.8 7.8 28 143-170 142-169 (499)
343 cd07627 BAR_Vps5p The Bin/Amph 25.7 5.5E+02 0.012 23.9 10.9 23 147-169 145-167 (216)
344 COG5493 Uncharacterized conser 25.6 5.9E+02 0.013 24.2 10.5 52 79-132 10-63 (231)
345 PF09457 RBD-FIP: FIP domain ; 25.5 2.1E+02 0.0045 20.8 4.9 35 141-175 3-37 (48)
346 cd07625 BAR_Vps17p The Bin/Amp 25.5 6.1E+02 0.013 24.4 11.1 34 3-36 6-39 (230)
347 PF14197 Cep57_CLD_2: Centroso 25.5 3.3E+02 0.007 21.2 8.0 46 109-163 20-65 (69)
348 PF10498 IFT57: Intra-flagella 25.3 2.8E+02 0.0061 28.5 7.7 48 83-131 249-296 (359)
349 PRK09039 hypothetical protein; 24.9 4.5E+02 0.0098 26.7 9.2 18 236-253 235-252 (343)
350 KOG2077 JNK/SAPK-associated pr 24.8 5.7E+02 0.012 28.2 9.9 108 78-185 266-390 (832)
351 PF05130 FlgN: FlgN protein; 24.7 4E+02 0.0087 22.0 10.9 36 99-134 35-70 (143)
352 PRK00888 ftsB cell division pr 24.6 2.9E+02 0.0064 23.1 6.5 24 105-128 31-54 (105)
353 PRK04863 mukB cell division pr 24.5 4.4E+02 0.0095 32.4 10.2 87 88-176 1040-1126(1486)
354 PF07544 Med9: RNA polymerase 24.4 3.7E+02 0.008 21.4 7.8 55 112-166 25-80 (83)
355 PF03954 Lectin_N: Hepatic lec 24.4 1.4E+02 0.0031 26.5 4.7 29 140-168 82-110 (138)
356 PF12072 DUF3552: Domain of un 24.3 4.7E+02 0.01 24.2 8.5 36 146-181 114-149 (201)
357 PF06419 COG6: Conserved oligo 24.2 3.1E+02 0.0067 30.1 8.4 77 87-165 21-100 (618)
358 PF04518 Effector_1: Effector 24.2 6.1E+02 0.013 26.3 9.9 84 103-189 202-286 (379)
359 TIGR02894 DNA_bind_RsfA transc 24.1 5.6E+02 0.012 23.4 8.7 7 75-81 80-86 (161)
360 PRK14127 cell division protein 24.1 1.5E+02 0.0032 25.3 4.6 28 142-169 41-68 (109)
361 PF03357 Snf7: Snf7; InterPro 24.1 4.8E+02 0.01 22.7 9.8 32 102-133 2-33 (171)
362 PRK00578 prfB peptide chain re 24.0 6.5E+02 0.014 26.0 10.1 29 77-105 2-30 (367)
363 PF11559 ADIP: Afadin- and alp 24.0 4.9E+02 0.011 22.7 8.9 19 103-121 61-79 (151)
364 PF14362 DUF4407: Domain of un 23.9 5.3E+02 0.011 25.2 9.3 29 102-130 136-164 (301)
365 PRK14908 glycyl-tRNA synthetas 23.7 86 0.0019 36.5 4.0 60 318-387 48-107 (1000)
366 PHA00727 hypothetical protein 23.6 2.7E+02 0.0058 26.4 6.5 29 104-132 7-35 (278)
367 PF13864 Enkurin: Calmodulin-b 23.4 3.4E+02 0.0073 22.2 6.6 46 117-162 46-91 (98)
368 TIGR01730 RND_mfp RND family e 23.4 3.7E+02 0.0079 25.8 8.0 28 139-166 103-130 (322)
369 PF08181 DegQ: DegQ (SacQ) fam 23.3 77 0.0017 22.3 2.2 22 156-177 8-29 (46)
370 PF06120 Phage_HK97_TLTM: Tail 23.3 5.5E+02 0.012 25.8 9.2 30 141-170 77-106 (301)
371 PF04799 Fzo_mitofusin: fzo-li 23.3 4.6E+02 0.01 24.2 7.9 28 141-168 140-167 (171)
372 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.2 4.7E+02 0.01 22.5 7.8 28 144-171 97-124 (132)
373 PF07352 Phage_Mu_Gam: Bacteri 23.1 5.2E+02 0.011 22.7 8.8 57 102-166 4-60 (149)
374 PRK13694 hypothetical protein; 23.1 4E+02 0.0086 21.7 6.6 28 106-133 10-37 (83)
375 PF07889 DUF1664: Protein of u 23.1 5.1E+02 0.011 22.6 8.0 15 147-161 105-119 (126)
376 COG3599 DivIVA Cell division i 23.1 6.6E+02 0.014 23.9 9.6 43 92-134 19-63 (212)
377 PF07716 bZIP_2: Basic region 23.0 3E+02 0.0065 19.9 5.7 22 143-164 30-51 (54)
378 TIGR01843 type_I_hlyD type I s 22.9 3.1E+02 0.0066 27.6 7.6 22 151-172 245-266 (423)
379 PF05667 DUF812: Protein of un 22.9 3E+02 0.0064 30.3 7.8 41 139-179 441-481 (594)
380 PF04508 Pox_A_type_inc: Viral 22.9 1.1E+02 0.0024 18.9 2.6 19 146-164 2-20 (23)
381 PF09763 Sec3_C: Exocyst compl 22.9 4.7E+02 0.01 29.1 9.6 50 82-131 1-53 (701)
382 PF09744 Jnk-SapK_ap_N: JNK_SA 22.8 5.5E+02 0.012 23.2 8.3 34 149-182 86-119 (158)
383 PF10168 Nup88: Nuclear pore c 22.7 9.5E+02 0.02 27.1 11.8 29 103-131 641-669 (717)
384 TIGR03007 pepcterm_ChnLen poly 22.7 8.7E+02 0.019 25.4 11.2 70 106-176 166-235 (498)
385 PF10828 DUF2570: Protein of u 22.4 4.6E+02 0.01 21.9 8.0 71 111-183 21-91 (110)
386 PF15456 Uds1: Up-regulated Du 22.1 5.3E+02 0.011 22.4 8.7 30 98-127 19-48 (124)
387 PF09730 BicD: Microtubule-ass 22.0 2.9E+02 0.0063 31.1 7.6 79 100-178 33-116 (717)
388 PF05377 FlaC_arch: Flagella a 21.9 3.1E+02 0.0068 20.6 5.4 17 145-161 21-37 (55)
389 COG3879 Uncharacterized protei 21.8 4.2E+02 0.0092 25.9 7.8 32 102-133 51-82 (247)
390 PF07200 Mod_r: Modifier of ru 21.8 3.7E+02 0.0079 23.4 7.0 49 83-131 43-92 (150)
391 PF10211 Ax_dynein_light: Axon 21.8 6E+02 0.013 23.4 8.7 14 104-117 87-100 (189)
392 KOG0946 ER-Golgi vesicle-tethe 21.8 9.2E+02 0.02 27.8 11.1 58 72-129 613-685 (970)
393 KOG4302 Microtubule-associated 21.8 1E+03 0.022 26.6 11.6 78 101-178 54-143 (660)
394 PF09726 Macoilin: Transmembra 21.7 5.7E+02 0.012 28.7 9.8 70 102-171 496-571 (697)
395 PRK09841 cryptic autophosphory 21.7 5.7E+02 0.012 28.6 9.9 11 384-394 640-650 (726)
396 PRK00106 hypothetical protein; 21.5 5.5E+02 0.012 27.9 9.3 35 148-182 135-169 (535)
397 PHA02047 phage lambda Rz1-like 21.4 3.9E+02 0.0084 22.4 6.3 42 143-184 46-87 (101)
398 TIGR02449 conserved hypothetic 21.3 3.9E+02 0.0085 20.7 8.3 18 161-178 44-61 (65)
399 KOG0250 DNA repair protein RAD 21.3 5.8E+02 0.013 30.1 9.8 28 141-168 404-431 (1074)
400 PRK06746 peptide chain release 21.3 6.5E+02 0.014 25.6 9.3 38 82-122 8-45 (326)
401 PF05377 FlaC_arch: Flagella a 21.3 3.2E+02 0.007 20.5 5.3 24 147-170 16-39 (55)
402 KOG1035 eIF-2alpha kinase GCN2 21.2 4.5E+02 0.0098 31.6 9.0 118 243-382 934-1054(1351)
403 PF14362 DUF4407: Domain of un 21.0 7E+02 0.015 24.4 9.5 33 141-173 138-170 (301)
404 PF07028 DUF1319: Protein of u 20.7 5.8E+02 0.013 22.4 9.7 59 113-174 65-125 (126)
405 PF07888 CALCOCO1: Calcium bin 20.7 5.7E+02 0.012 27.9 9.1 71 101-171 164-239 (546)
406 smart00150 SPEC Spectrin repea 20.7 3.9E+02 0.0084 20.3 10.8 41 90-130 20-60 (101)
407 PF10473 CENP-F_leu_zip: Leuci 20.5 6.1E+02 0.013 22.5 8.9 24 106-129 64-87 (140)
408 PRK00888 ftsB cell division pr 20.4 4.1E+02 0.009 22.2 6.6 19 109-127 28-46 (105)
409 PF08367 M16C_assoc: Peptidase 20.3 1.4E+02 0.003 28.6 4.2 55 132-198 23-77 (248)
410 PF07334 IFP_35_N: Interferon- 20.3 3.4E+02 0.0074 21.7 5.6 38 149-186 4-44 (76)
411 COG3352 FlaC Putative archaeal 20.2 4.9E+02 0.011 23.6 7.2 11 98-108 44-54 (157)
412 PRK03947 prefoldin subunit alp 20.2 5.6E+02 0.012 22.0 9.6 29 143-171 99-127 (140)
413 PF04156 IncA: IncA protein; 20.2 6.4E+02 0.014 22.7 9.4 14 115-128 130-143 (191)
414 PF04350 PilO: Pilus assembly 20.1 1.4E+02 0.003 25.4 3.9 25 153-177 24-48 (144)
415 PF05565 Sipho_Gp157: Siphovir 20.0 5.6E+02 0.012 22.9 7.9 38 138-175 54-91 (162)
416 COG0752 GlyQ Glycyl-tRNA synth 20.0 1.6E+02 0.0035 28.9 4.4 61 318-388 48-108 (298)
No 1
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=4.4e-92 Score=725.36 Aligned_cols=378 Identities=78% Similarity=1.192 Sum_probs=350.7
Q ss_pred cccccccccc--ccccccc--cCCCCCchhhhhhhccccccccccccC--CCCCccCCCccccccchHHHhcCHHHHHHH
Q 016049 17 CFMFRPVTKT--LGLISRR--NHSQKPPFRLLARAFSAPALQTIDTTD--NKGGVAVKPQWKAAIDFKWIRDNKEAVSAN 90 (396)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~mlD~~~ir~n~e~v~~~ 90 (396)
++++++++.+ |..++|. +++++|..+|+.+++|++++++ +.|. ..++...+|+||||||+++||+|+|.|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~mlD~k~ir~n~~~v~~~ 82 (502)
T PLN02320 4 FIFLKPFTNTLTLGPFSRLTVSLLQRPHKPLLVRAFSASAAVQ-DIPATQKSDSSVARPQWKAAIDFKWIRDNKEAVAIN 82 (502)
T ss_pred eeeechhccccccchhhhccccccccccchHHHHHHhhhhccc-CCCccccccCcccccccccccCHHHHHhCHHHHHHH
Confidence 3355555544 4556655 3466777888888888877543 3332 356667899999999999999999999999
Q ss_pred HHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 91 IRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 91 l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+++|+.+.++|+|+++|++||++++++++||++||+++|+|+++..+++.+++++++++||++|+++|+++.++++++.+
T Consensus 83 l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 83 IRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877899999999999999999999999999999999886667788999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHH
Q 016049 171 EAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINW 250 (396)
Q Consensus 171 ~~~~lPN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~ 250 (396)
+++.|||++||+||+|.||+++++++||+++.|+|+++||++||+++|||||++|++++|++||||+|++++|++||++|
T Consensus 163 ~~l~iPN~~h~~VP~G~de~~~~~~~~G~~~~f~f~~rdH~eLg~~L~Lfdf~~aakvsG~~f~~L~g~~a~Le~ALi~f 242 (502)
T PLN02320 163 EAQSIPNMTHPDVPVGGEDSSAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNW 242 (502)
T ss_pred HHHhCCCCCCccCCCCCCCCCeEEEecCCCCCCCCCCcCHHHHHHHcCCccccchhhcCCCeeEEeCCHHHHHHHHHHHH
Confidence 99999999999999998887788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccc
Q 016049 251 TLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHC 330 (396)
Q Consensus 251 ~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~c 330 (396)
+++.+.++||++|.||+|++.++|++|||+|++.++++|+++++++||+||||+|++++|+++++++++||+||+++|+|
T Consensus 243 ~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~c 322 (502)
T PLN02320 243 TLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDGSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHC 322 (502)
T ss_pred HHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEECCCceEEeecccccccccccccccCHhhCCceeEEeccc
Confidence 99999999999999999999999999999999877799999999999999999999999999999999999999999999
Q ss_pred cccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 331 FRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 331 FR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
||+|+|++|++++||+|||||+|||+|+||+|++|+++|++|+++++++|+.||||||+|.|||+
T Consensus 323 FR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tg 387 (502)
T PLN02320 323 FRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKTLDMATA 387 (502)
T ss_pred cccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 2
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-81 Score=634.26 Aligned_cols=321 Identities=39% Similarity=0.646 Sum_probs=306.8
Q ss_pred ccchHHHhcCHHHHHHHHHccCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCch-hHHHHHHHHHhH
Q 016049 74 AIDFKWIRDNKEAVSANIRNRNSN-ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK-LEPS-ERQKLIEEGKNL 150 (396)
Q Consensus 74 mlD~~~ir~n~e~v~~~l~~R~~~-~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~-~~~~-~~~~l~~~~~~l 150 (396)
|+|+++||+|+|.|++++.+|+.+ .++|.++++|++||+++.+++.|+++||++|++|+.+ ..+. +...++++++.+
T Consensus 1 mld~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l 80 (429)
T COG0172 1 MLDLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKEL 80 (429)
T ss_pred CchHHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 899999999999999999999744 6799999999999999999999999999999999742 2222 578899999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC-CCceeeeeeCCCCC--CCCCCCCHHHHhhhcCccccccccc
Q 016049 151 KEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGE-DCSIIRKTVGNPSV--FNFPVKDHFQLGKALDIFDFDAAAE 227 (396)
Q Consensus 151 k~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~e-e~~~v~~~~g~~~~--~~f~~~dH~eLg~~l~l~df~~~ak 227 (396)
++++++++.++.+++++++.+++.|||++|++||+|.+ ++|+++++||+++. |+|++++|++||+.+|++||++|+|
T Consensus 81 ~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VPvg~de~~n~~vr~~g~~~~~~~~f~pk~H~~lge~l~~~Df~~aaK 160 (429)
T COG0172 81 KEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDEDDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFERAAK 160 (429)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhCCCCCccccCcCCCcccceEEEEEecCccccccCCcchHHHHhhhcCcchhhhhcc
Confidence 99999999999999999999999999999999999954 57889999999884 5999999999999999999999999
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHH
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVG 307 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~ 307 (396)
++|+|||||+|.+|+|++||++||+|.+.++||+++.+|.||+.++|.++|++|+|.+ ++|++++.++||+||||+|++
T Consensus 161 vsGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e-~~y~v~~~~~~LipTaEvpl~ 239 (429)
T COG0172 161 VSGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEE-DLYKVEDPDLYLIPTAEVPLT 239 (429)
T ss_pred cCCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcc-cceEecCCCEEEEecchhhhH
Confidence 9999999999999999999999999999999999999999999999999999999875 799999999999999999999
Q ss_pred HHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcE
Q 016049 308 GIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHF 387 (396)
Q Consensus 308 ~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpy 387 (396)
++|++++++..+||++|+++|+|||+|||++|+|||||+|+|||+|||+|+||.|++|++++++|+..++++++.|+|||
T Consensus 240 ~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPy 319 (429)
T COG0172 240 NLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPY 319 (429)
T ss_pred HhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccC
Q 016049 388 KLLLFLAE 395 (396)
Q Consensus 388 rvv~~~t~ 395 (396)
|++.+||+
T Consensus 320 Rvv~lctG 327 (429)
T COG0172 320 RVVNLCTG 327 (429)
T ss_pred eEeeeccC
Confidence 99999986
No 3
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=2.8e-80 Score=634.17 Aligned_cols=320 Identities=33% Similarity=0.569 Sum_probs=306.1
Q ss_pred ccchHHHh----cCHHHHHHHHHccCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCchhHHHHHHHH
Q 016049 74 AIDFKWIR----DNKEAVSANIRNRNSNAN-LELVLELYEKMLNVQKEVDRLREERNAVANKMKG-KLEPSERQKLIEEG 147 (396)
Q Consensus 74 mlD~~~ir----~n~e~v~~~l~~R~~~~~-~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-~~~~~~~~~l~~~~ 147 (396)
|||+++|| +|+|.|+++|++|+.+.+ +|+|+++|++||++++++++|+++||++|++|+. +..+++.+++++++
T Consensus 1 mlD~k~ir~~~~~~~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~ 80 (448)
T PLN02678 1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAET 80 (448)
T ss_pred CCCHHHHhcccccCHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 89999999 699999999999997655 8999999999999999999999999999999976 44566788999999
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC-CceeeeeeCCCCCCCCCCCCHHHHhhhcCcccccccc
Q 016049 148 KNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGED-CSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAA 226 (396)
Q Consensus 148 ~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee-~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~a 226 (396)
++|+++|+.+++++.++++++.++++.|||++||+||+|.|+ +|++++.||.++.++ +++||++||+++|||||++|+
T Consensus 81 ~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g~~~~~~-~~~dH~~Lg~~l~l~d~~~~~ 159 (448)
T PLN02678 81 KELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWGEKRQEP-KLKNHVDLVELLGIVDTERGA 159 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEcCCCCCC-CCCCHHHHHhhccCccchhhh
Confidence 999999999999999999999999999999999999999766 678899999998887 789999999999999999999
Q ss_pred ccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC--CceEEecCCCH
Q 016049 227 EVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG--ADQCLIGTAEI 304 (396)
Q Consensus 227 kvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~--~~l~L~pTaEv 304 (396)
+++|++||||+|.|++|++||++|+++.+.++||++|.||+|++.++|++|||+|+|.+ +||++++ +++||+||||+
T Consensus 160 ~vsG~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e-~my~i~~~~~~~yLi~TaE~ 238 (448)
T PLN02678 160 DVAGGRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDE-ELYKVTGEGDDKYLIATSEQ 238 (448)
T ss_pred hhcCceeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchh-cCceecCCCCceeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999875 8999963 68999999999
Q ss_pred HHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccc--hHHHHHHHHHHHHHHHHH
Q 016049 305 PVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEE--SDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 305 pl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~--S~~~~ee~l~~~e~il~~ 382 (396)
|++++|+++++++++||+||+++|+|||+|+|++|++++||+|+|||+|||+|+||+|++ |+++|++|++++++||+.
T Consensus 239 ~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~ 318 (448)
T PLN02678 239 PLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQS 318 (448)
T ss_pred ccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred cCCcEEEEecccC
Q 016049 383 LGLHFKLLLFLAE 395 (396)
Q Consensus 383 LgLpyrvv~~~t~ 395 (396)
||||||+|.|||+
T Consensus 319 L~lpyrvv~~~sg 331 (448)
T PLN02678 319 LGIPYQVVSIVSG 331 (448)
T ss_pred cCCCeEEEeeccc
Confidence 9999999999986
No 4
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-78 Score=622.09 Aligned_cols=321 Identities=40% Similarity=0.646 Sum_probs=309.5
Q ss_pred ccchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCchhHHHHHHHHHhHHH
Q 016049 74 AIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG-KLEPSERQKLIEEGKNLKE 152 (396)
Q Consensus 74 mlD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-~~~~~~~~~l~~~~~~lk~ 152 (396)
|||+++||+|+|.|++++++|+.+.++|+|+++|++||+++.++++||++||++||+|+. +..+++.+++++++++|++
T Consensus 1 MlD~k~ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~ 80 (425)
T PRK05431 1 MLDIKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKE 80 (425)
T ss_pred CCCHHHHHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Confidence 899999999999999999999876789999999999999999999999999999999987 3444567889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC-CceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCc
Q 016049 153 GLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGED-CSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGS 231 (396)
Q Consensus 153 ~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee-~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~ 231 (396)
+++++++++.++++++.+.++.|||++||+||+|.|+ +|+++++||+++.|+|+++||++||+++||+||++|++++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g~~~~~n~~i~~~g~~~~~~f~~~dH~ei~~~l~l~d~~~~~~~~G~ 160 (425)
T PRK05431 81 EIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDEDDNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAAKVSGS 160 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCCceEEEEeCCCCCCCCCCCCHHHHHhhcCceecccccccCCc
Confidence 9999999999999999999999999999999999776 567899999999999999999999999999999999999999
Q ss_pred ceeecchHHHHHHHHHHHHHHHHHH-HCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHH
Q 016049 232 KFYYLKNEAVMLEMGLINWTLSEVI-KRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIH 310 (396)
Q Consensus 232 rf~~l~g~~a~Le~aLi~~~~d~~~-~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~ 310 (396)
||||+.|.|++|++||++|+++.+. +.||++|.+|.|++.++|++|||+|+|.+ +||+++++++||+||+|+|++++|
T Consensus 161 g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~-~ly~i~~~~~~L~pTsE~~l~~l~ 239 (425)
T PRK05431 161 RFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEE-DLYKIEDDDLYLIPTAEVPLTNLH 239 (425)
T ss_pred eeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchh-hceEecCCCEEEEeCCcHHHHHHH
Confidence 9999999999999999999999998 99999999999999999999999999976 799999999999999999999999
Q ss_pred hccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEE
Q 016049 311 MDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLL 390 (396)
Q Consensus 311 ~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv 390 (396)
+++++++++||+||+++|+|||+|+|++|++++||+|+|||+|+|+|+||+|++|++++++|++++++||+.||||||+|
T Consensus 240 ~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~v 319 (425)
T PRK05431 240 RDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPYRVV 319 (425)
T ss_pred hcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccC
Q 016049 391 LFLAE 395 (396)
Q Consensus 391 ~~~t~ 395 (396)
.+|++
T Consensus 320 ~~~s~ 324 (425)
T PRK05431 320 LLCTG 324 (425)
T ss_pred EcCCc
Confidence 99986
No 5
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=7.7e-78 Score=615.20 Aligned_cols=321 Identities=36% Similarity=0.623 Sum_probs=308.1
Q ss_pred ccchHHHhcCHHHHHHHHHccCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCchh-HHHHHHHHHh
Q 016049 74 AIDFKWIRDNKEAVSANIRNRNSNA--NLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK-LEPSE-RQKLIEEGKN 149 (396)
Q Consensus 74 mlD~~~ir~n~e~v~~~l~~R~~~~--~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~-~~~~~-~~~l~~~~~~ 149 (396)
|||+++||+|+|.|++++++|+.+. ++|+|+++|++||++++++++|+++||++||+|+.+ ..+++ .+++++++++
T Consensus 1 MlDik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~ 80 (418)
T TIGR00414 1 MLDRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKE 80 (418)
T ss_pred CCCHHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 8999999999999999999999754 489999999999999999999999999999999873 33445 7899999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC-CceeeeeeCCCCCCCCCCCCHHHHhhhcCcccccccccc
Q 016049 150 LKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGED-CSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEV 228 (396)
Q Consensus 150 lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee-~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akv 228 (396)
|+++|+++++++.++++++.+.++.|||++||+||+|.|+ +|+++++||+++.|+|+++||++||+++||+||++++++
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~~~~~n~~~~~~g~~~~~~~~~~~H~~l~~~l~l~d~~~~~~~ 160 (418)
T TIGR00414 81 LKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKDEEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKV 160 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcccCeEeeecCCCCCCCCCCCCHHHHHHhCCCccccccccC
Confidence 9999999999999999999999999999999999999765 678899999999999999999999999999999999999
Q ss_pred CCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHH
Q 016049 229 SGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGG 308 (396)
Q Consensus 229 sG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~ 308 (396)
+|+||||+.|.|++|++||++|+++.+.+.||++|.+|.|++.++|++||++|+|.+ +||+++++++||+||+|+|+++
T Consensus 161 ~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~-~~y~i~~~~~~L~pTsE~~~~~ 239 (418)
T TIGR00414 161 TGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEE-DIFKLEDTDLYLIPTAEVPLTN 239 (418)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccc-cceEecCCCEEEEeCCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999998875 8999999999999999999999
Q ss_pred HHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEE
Q 016049 309 IHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFK 388 (396)
Q Consensus 309 l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyr 388 (396)
+|+++++++++||+||+++|+|||+|+|++|++|+||+|+|||+|+|+|+||+|++|++++++|+++++++|+.|||||+
T Consensus 240 ~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r 319 (418)
T TIGR00414 240 LHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPYR 319 (418)
T ss_pred HHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccC
Q 016049 389 LLLFLAE 395 (396)
Q Consensus 389 vv~~~t~ 395 (396)
++.+||+
T Consensus 320 ~v~~~t~ 326 (418)
T TIGR00414 320 VVNLCSG 326 (418)
T ss_pred EEecCcc
Confidence 9999985
No 6
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-72 Score=561.39 Aligned_cols=323 Identities=40% Similarity=0.656 Sum_probs=297.0
Q ss_pred cccchHHHhc----CHHHHHHHHHccCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----cCCc----h
Q 016049 73 AAIDFKWIRD----NKEAVSANIRNRNSNA-NLELVLELYEKMLNVQKEVDRLREERNAVANKMKG-----KLEP----S 138 (396)
Q Consensus 73 ~mlD~~~ir~----n~e~v~~~l~~R~~~~-~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-----~~~~----~ 138 (396)
+|||++.++. ||+.++++.++|+.+. .+++++++|.+|++...++++|+.+.|.+++.|+. +... +
T Consensus 1 ~~L~~~lf~~~~g~~p~~ir~~q~~r~~d~~~v~~~i~~d~~w~~~~~~ldeln~~~n~l~k~i~~~k~kkke~~~~l~~ 80 (455)
T KOG2509|consen 1 QMLDIRLFRTRKGGNPELIRESQKKRFQDVEAVDEVIELDKEWIETRFELDELNKEKNKLNKEIGDLKLKKKEDIGQLEE 80 (455)
T ss_pred CccccccccccCCCChHHHHHHHHHhhcCHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhhHhhHHHHhhcchhhHHHH
Confidence 5899999984 8999999999998764 57999999999999999999999999999988862 1111 1
Q ss_pred hH--HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCCCHHHHhhh
Q 016049 139 ER--QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKA 216 (396)
Q Consensus 139 ~~--~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~ 216 (396)
+. ..-.++++.|+++..+++++..++++++++.+.+|||++||+||+|+||.++++..+|.+..+.++...|.+|+..
T Consensus 81 ~~~~~~~~~~~~~l~e~~~~~~~~~~~l~~el~~~~~~ipN~~hpsVpv~~ee~~~~v~~~~~~~~~~~~~~~~~~l~~~ 160 (455)
T KOG2509|consen 81 SKAKNTEGAERKLLKEEAVELEEDESKLEDELYEVLLQIPNITHPSVPVSNEEQANVVQRVGGPLEFEFKLSHHDELVRA 160 (455)
T ss_pred hhhHhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCchhhhhHHHHhcCCcccccccccHHHHHHh
Confidence 11 1122567889999999999999999999999999999999999999998888877888888888888899999999
Q ss_pred cCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCC-c
Q 016049 217 LDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGA-D 295 (396)
Q Consensus 217 l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~-~ 295 (396)
+|++|++++++|+|+|+|||+|++|.|++||++|+++.+.++||+++.||+|++.+++.+||++|++.++++|.+++. +
T Consensus 161 ~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~ 240 (455)
T KOG2509|consen 161 LGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDE 240 (455)
T ss_pred cccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999877666777654 7
Q ss_pred eEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHH
Q 016049 296 QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRI 375 (396)
Q Consensus 296 l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~ 375 (396)
.||++|||+||+++|+++++...+||+||+++|+|||.|+|++|+|++||||||||+|||||++|+|++|+++|+||+++
T Consensus 241 ~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~ 320 (455)
T KOG2509|consen 241 KYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINN 320 (455)
T ss_pred ceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEecccC
Q 016049 376 EEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 376 ~e~il~~LgLpyrvv~~~t~ 395 (396)
++++|++||||||+|+|||+
T Consensus 321 ~eef~qsLgip~rvl~m~S~ 340 (455)
T KOG2509|consen 321 QEEFYQSLGLPYRVLNMPSG 340 (455)
T ss_pred HHHHHHHhCCceeEecCCch
Confidence 99999999999999999985
No 7
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=1.3e-47 Score=376.84 Aligned_cols=204 Identities=50% Similarity=0.842 Sum_probs=198.4
Q ss_pred ceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccc
Q 016049 191 SIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVR 270 (396)
Q Consensus 191 ~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~ 270 (396)
|+++++||.++.|+++++||++||+++|||||+++++++|+|+|++.+.+++|+++|++|+.+.+.+.||++|.+|.|++
T Consensus 2 ~~~~~~~g~~~~~~~~~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~ 81 (297)
T cd00770 2 NVEIRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVR 81 (297)
T ss_pred ceEEEEECCCCCCCCCCCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeee
Q 016049 271 SSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQ 350 (396)
Q Consensus 271 ~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQ 350 (396)
.++|++||+++.+.+ +||++++++++|+||+|++++++++++++++++||+|++++|+|||+|++++|.+++||+|+||
T Consensus 82 ~~l~~~sg~~~~~~~-~~f~v~~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~re 160 (297)
T cd00770 82 KEVMEGTGQLPKFDE-QLYKVEGEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQ 160 (297)
T ss_pred HHHHhhcCcCccChh-cccEecCCCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEe
Confidence 999999999998875 8999998899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 351 FSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 351 F~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
|+|+|+|+||+|+++.++++++++.++++|+.|||||+++.+|++
T Consensus 161 F~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~ 205 (297)
T cd00770 161 FEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTG 205 (297)
T ss_pred eeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCc
Confidence 999999999999999999999999999999999999999999875
No 8
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=100.00 E-value=7.6e-38 Score=321.49 Aligned_cols=189 Identities=20% Similarity=0.292 Sum_probs=176.9
Q ss_pred eeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHH-HHCCCEeeecCCccc
Q 016049 192 IIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEV-IKRGFTPLTTPEIVR 270 (396)
Q Consensus 192 ~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~-~~~Gy~ei~tP~lv~ 270 (396)
.+++.||+++.|+|+ ++|++|++++||+| +++|+|||++++.++.|++||++|+++.+ .+.||+++.+|.|++
T Consensus 180 ~~~~~~~~~~~~~F~-~~h~el~~k~glid-----k~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp 253 (520)
T TIGR00415 180 EIIAESKAKRDFFFD-GDPTDEAEKLGWVK-----KFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIP 253 (520)
T ss_pred ceeeecCCCCCCCCC-CCHHHHHHHCCCee-----EEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEec
Confidence 588999999999998 99999999999997 68999999999999999999999999866 567999999999999
Q ss_pred hHHHHhhccCCCCCCcccEEEe--------------------------------CCceEEecCCCHHHHHHHhccccCCC
Q 016049 271 SSVVEKCGFQPRGANTQVYSIE--------------------------------GADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 271 ~~~~~~sG~~p~~~~~q~y~i~--------------------------------~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
.++|.+|||++.|.+ ++|++. +.+++|+||+|+|++++|++++++++
T Consensus 254 ~e~l~k~ghl~gF~~-e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~ 332 (520)
T TIGR00415 254 LDIMNKMRYLEGLPE-GMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAE 332 (520)
T ss_pred HHHHcccCCCCCCch-hheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChh
Confidence 999999999999876 899883 12688999999999999999999999
Q ss_pred CCCceEEEec-cccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEe
Q 016049 319 LLPLKYAAFS-HCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLL 391 (396)
Q Consensus 319 ~LPlK~~~~~-~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~ 391 (396)
+||+++++++ +|||+|+|+ ++||+|+|||+|+|+|.+|+|++|++++++|+++++++++.||||||++.
T Consensus 333 dLPlk~~~~s~~CFR~EaGs----trGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lpyrv~~ 402 (520)
T TIGR00415 333 DKPIKFFDRSGWTYRWEAGG----AKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWTEV 402 (520)
T ss_pred hCCeeEEEEecCeEeCCCCC----CCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEee
Confidence 9999999955 799999985 79999999999999999999999999999999999999999999999985
No 9
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-37 Score=322.28 Aligned_cols=199 Identities=18% Similarity=0.258 Sum_probs=179.4
Q ss_pred CCCCCCCCCCceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHH-HHHCC
Q 016049 181 PDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSE-VIKRG 259 (396)
Q Consensus 181 ~~vP~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~-~~~~G 259 (396)
..||+|+++..++++.+| ++.++|+ ++|+++++++||+| +++|.|+|++.+.++.|+++|++|+++. ..+.|
T Consensus 170 ~~~~~g~~~~~~~~~~~~-~~~~~F~-~~h~el~~~~glld-----k~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~G 242 (517)
T PRK00960 170 LTFYVGKAEPGTIVSESK-KREITFD-GDPTEEAEKLGWVK-----RFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLG 242 (517)
T ss_pred CccCCCCCCCCeEEEEeC-CCCCCCC-CCHHHHHHHCCCcc-----ccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcC
Confidence 389999888779999999 8899998 99999999999999 5889999999999999999999999987 56779
Q ss_pred CEeeecCCccchHHHHhhccCCCCCCcccEEEeC--------------------------------CceEEecCCCHHHH
Q 016049 260 FTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG--------------------------------ADQCLIGTAEIPVG 307 (396)
Q Consensus 260 y~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~--------------------------------~~l~L~pTaEvpl~ 307 (396)
|+++.+|.|++.++|++|||++.|.+ +||++.. ..++|.|+++.|++
T Consensus 243 yeev~~P~Li~~ell~ksGhl~~F~e-~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y 321 (517)
T PRK00960 243 FDECLFPKLIPLEVMYKMRYLEGLPE-GMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFY 321 (517)
T ss_pred CeEEECCcccCHHHHhhcCCccCChh-hceEeeccccccccccchhhhccccccccccccccccccccccccccCcHHHH
Confidence 99999999999999999999999876 7998852 12345555555555
Q ss_pred HHHhccccCCCCCCceEEE-eccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 308 GIHMDSILSESLLPLKYAA-FSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 308 ~l~~~~~l~~~~LPlK~~~-~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
.+|+++++++++||+|+++ .|+|||+|+|+ ++||+|+|||+|+|+|+||+|+++++++++++..++.+++.||||
T Consensus 322 ~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs----~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp 397 (517)
T PRK00960 322 QFFQGETVDVDELPIKFFDRSGWTYRWEGGG----AHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLE 397 (517)
T ss_pred HHHhCCcCChhhCCHHHhhccCCceeCCCCC----CCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999 55999999764 899999999999999999999999999999999999999999999
Q ss_pred -EEEEe
Q 016049 387 -FKLLL 391 (396)
Q Consensus 387 -yrvv~ 391 (396)
||++.
T Consensus 398 ~~r~v~ 403 (517)
T PRK00960 398 YWREVG 403 (517)
T ss_pred ceEEec
Confidence 99888
No 10
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=6.2e-36 Score=319.59 Aligned_cols=183 Identities=16% Similarity=0.313 Sum_probs=169.6
Q ss_pred CCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCC
Q 016049 206 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN 285 (396)
Q Consensus 206 ~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~ 285 (396)
+.+||++||+++|||||++ .+|+|+||+.+.|++++++|++|+++.+.++||++|.||+|++.++|++|||++.+.+
T Consensus 215 ~~rdH~~lg~~l~lf~~~~---~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~ 291 (614)
T PLN02837 215 KRRDHRRLGQDLDLFSIQD---DAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKE 291 (614)
T ss_pred hhCCHHHHHHHcCCcccCc---CcCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchh
Confidence 5689999999999999998 4889999999999999999999999999999999999999999999999999999876
Q ss_pred cccEEEeC--CceEEecCCCHHH-HHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc
Q 016049 286 TQVYSIEG--ADQCLIGTAEIPV-GGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP 362 (396)
Q Consensus 286 ~q~y~i~~--~~l~L~pTaEvpl-~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p 362 (396)
+||.+.+ ++.|+++|++||+ +.+|++++.++++||+|++++|+|||+|+.+ .++||+|+|||+|+|+|+||+|
T Consensus 292 -~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g---~~~GL~RvreF~~~e~h~f~~~ 367 (614)
T PLN02837 292 -NMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSG---SLHGLFRVRGFTQDDAHIFCLE 367 (614)
T ss_pred -hcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCC---CCcCcccccceEECeEEEEeCH
Confidence 7999843 4666666777776 8899999999999999999999999999963 3899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 363 EESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 363 e~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+++.+++++++++++++|+.||+||+++.++++
T Consensus 368 ~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~ 400 (614)
T PLN02837 368 DQIKDEIRGVLDLTEEILKQFGFSKYEINLSTR 400 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 999999999999999999999999999999874
No 11
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=6.5e-35 Score=286.89 Aligned_cols=180 Identities=22% Similarity=0.326 Sum_probs=165.7
Q ss_pred CHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCccc
Q 016049 209 DHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQV 288 (396)
Q Consensus 209 dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~ 288 (396)
||++||++++++||+++ +|.|++++.+.+++++++|++|+++.+.++||++|.||.|++.++|.++||++.+.+ +|
T Consensus 1 dH~~l~~~~~l~~~~~~---~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~-~m 76 (298)
T cd00771 1 DHRRLGGELELFFFFDE---AGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRE-NM 76 (298)
T ss_pred ChhHHHHHcCCcccCCC---CCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCcccccc-Cc
Confidence 79999999999999886 455566666777888999999999999999999999999999999999999998875 79
Q ss_pred EEEeC--CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchH
Q 016049 289 YSIEG--ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESD 366 (396)
Q Consensus 289 y~i~~--~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~ 366 (396)
|++++ ++++|+||+|.+++.++++++.++++||+|++++|+|||+|+++ +++||+|+|||+|+|+|+||++++++
T Consensus 77 y~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~---~~~Gl~R~reF~q~e~~i~~~~e~~~ 153 (298)
T cd00771 77 FPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSG---ALHGLTRVRGFTQDDAHIFCTPDQIK 153 (298)
T ss_pred eEeccCCceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCC---CCCCccccccEEECCEEEEeCCcchH
Confidence 99975 47999999999999999999999999999999999999999885 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 367 SYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 367 ~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+++.++++++.++|+.||+++..+.+++.
T Consensus 154 ~e~~e~l~~~~~~l~~lgl~~~~i~l~~~ 182 (298)
T cd00771 154 EEIKGVLDLIKEVYSDFGFFDYKVELSTR 182 (298)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999999999999999999888888764
No 12
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=1.7e-33 Score=304.34 Aligned_cols=178 Identities=21% Similarity=0.356 Sum_probs=164.7
Q ss_pred CCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCC
Q 016049 205 FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA 284 (396)
Q Consensus 205 f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~ 284 (396)
.+.+||+.||++++||+|+.. .+|++||+ +.|++++++|++|+++.+.++||++|.||.|++.++|++|||++++.
T Consensus 289 ~~~rdH~~lg~~~~lf~~~~~--~~G~~~~l--P~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~ 364 (686)
T PLN02908 289 AKKRDHRLLGQKQELFFFHEL--SPGSCFFL--PHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYK 364 (686)
T ss_pred ccccCHHHHHHhcCCeeecCC--CCcceEEe--chHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccc
Confidence 457899999999999999986 47888644 55567899999999999999999999999999999999999999987
Q ss_pred CcccEEEe--CCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc
Q 016049 285 NTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP 362 (396)
Q Consensus 285 ~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p 362 (396)
+ +||.++ +++++|+||+|++++.+|+++..++++||+|++++|+|||+|+++ .++||+|+|||+|+|+|+||+|
T Consensus 365 ~-~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~---~l~Gl~RvReF~q~d~~if~~~ 440 (686)
T PLN02908 365 E-NMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSG---ALTGLTRVRRFQQDDAHIFCRE 440 (686)
T ss_pred h-hccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCc---CCcCccccccEEEeeEEEEcCH
Confidence 6 799864 578999999999999999999999999999999999999999987 3899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCcEEEE
Q 016049 363 EESDSYHEELIRIEEDLYSSLGLHFKLL 390 (396)
Q Consensus 363 e~S~~~~ee~l~~~e~il~~LgLpyrvv 390 (396)
++++++++++++++.++|+.||++|++.
T Consensus 441 ~q~~~e~~~~l~~~~~v~~~lG~~~~~~ 468 (686)
T PLN02908 441 DQIKDEVKGVLDFLDYVYEVFGFTYELK 468 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 9999999999999999999999999863
No 13
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=1.4e-33 Score=272.61 Aligned_cols=175 Identities=18% Similarity=0.170 Sum_probs=159.5
Q ss_pred HHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHH-hhccCCCCCCccc
Q 016049 210 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVE-KCGFQPRGANTQV 288 (396)
Q Consensus 210 H~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~-~sG~~p~~~~~q~ 288 (396)
..+|++++|++|++. ++|+ |++.+.+++++++|++++++.+.+.||++|.+|.|++.++|. ++|+++.+.+ +|
T Consensus 6 ~~~l~~~~~~~d~~~---~~G~--~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~-~~ 79 (261)
T cd00778 6 YTEVITKAELIDYGP---VKGC--MVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAP-EV 79 (261)
T ss_pred HHHHHHHhCCcccCC---CCCe--EEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCc-ce
Confidence 458999999999863 6665 566666778899999999999999999999999999999985 6999999876 79
Q ss_pred EEEeC-------CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEE-EeC
Q 016049 289 YSIEG-------ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMF-VFC 360 (396)
Q Consensus 289 y~i~~-------~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f-~f~ 360 (396)
|++.+ ++++|+||+|++++.++++++.++++||+|++++++|||+|+. +++||+|+|||+|+|+| .+|
T Consensus 80 f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~----~~~Gl~R~reF~~~d~h~~~~ 155 (261)
T cd00778 80 AWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETK----TTRPFLRTREFLWQEGHTAHA 155 (261)
T ss_pred EEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCC----CCCceeEeeeeeeeceeeccC
Confidence 99964 4799999999999999999999999999999999999999995 46899999999999997 589
Q ss_pred CccchHHHHHHHHHHHHHHHHHc-CCcEEEEeccc
Q 016049 361 QPEESDSYHEELIRIEEDLYSSL-GLHFKLLLFLA 394 (396)
Q Consensus 361 ~pe~S~~~~ee~l~~~e~il~~L-gLpyrvv~~~t 394 (396)
+++++.++++++++++++||+.| ||||+++.+|+
T Consensus 156 ~~e~~~~~~~~~~~~~~~i~~~llgl~~~~~~~~~ 190 (261)
T cd00778 156 TEEEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTE 190 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCc
Confidence 99999999999999999999999 99999999885
No 14
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.5e-33 Score=294.07 Aligned_cols=182 Identities=21% Similarity=0.292 Sum_probs=166.6
Q ss_pred CCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCc
Q 016049 207 VKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT 286 (396)
Q Consensus 207 ~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~ 286 (396)
.+||++||+++||+||++++..+|++ |+ +.|+++.++|.+|+.+.+.+.||++|.||.|++.++|..+||++.|.+
T Consensus 196 ~~dH~~Lg~~~~L~d~~~~s~~G~~~-~~--P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e- 271 (613)
T PRK03991 196 EPPHVKLMREKELADYEPASDVGHMR-YY--PKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGE- 271 (613)
T ss_pred CCCHHHHHHHCCCcccccccCeeeEE-EE--cHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccch-
Confidence 57999999999999998876555444 33 356788999999999999999999999999999999999999999876
Q ss_pred ccEEEeC--CceEEecCCCHHHHHHHhccccCCCCCCceEEEecc-ccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-
Q 016049 287 QVYSIEG--ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSH-CFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP- 362 (396)
Q Consensus 287 q~y~i~~--~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~-cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p- 362 (396)
+||+++. ++++|+||++.+++.+|++++.++++||+|++++|+ |||+|+++ +++||+|+|||+|+|+|+||.|
T Consensus 272 ~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g---~l~GL~RvReF~~~D~h~f~~~~ 348 (613)
T PRK03991 272 RQYRVKSDKKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRG---ELVGLKRLRAFTMPDMHTLCKDM 348 (613)
T ss_pred hceEecCCCceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCC---CCcCcccccceEeeeEEEEECCH
Confidence 8999964 689999999999999999999999999999999999 99999874 6999999999999999999996
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 363 EESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 363 e~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+++.++++++++++.++|+.||++|+++.++++
T Consensus 349 eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~~t~ 381 (613)
T PRK03991 349 EQAMEEFEKQYEMILETGEDLGRDYEVAIRFTE 381 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEecCHH
Confidence 999999999999999999999999999988753
No 15
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=2.4e-32 Score=264.57 Aligned_cols=178 Identities=18% Similarity=0.120 Sum_probs=158.4
Q ss_pred CCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcc
Q 016049 208 KDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ 287 (396)
Q Consensus 208 ~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q 287 (396)
..| +|+.+.|+++... ++|+.. |+|.+. ++.+.|++++.+.+.+.||++|.+|.|++.++|.++|+++++++++
T Consensus 5 ~~~-~~l~~ag~~~~~~---~~G~~~-~lP~g~-~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e 78 (264)
T cd00772 5 KSL-EHIGKAELADQGP---GRGIIN-FLPLAK-AILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKE 78 (264)
T ss_pred HHH-HHHHhcCCccccC---CCCEEE-ECCcHH-HHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCcc
Confidence 345 5888999999743 578764 555544 4568999999999999999999999999999999999999977557
Q ss_pred cEEEe---C----CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-
Q 016049 288 VYSIE---G----ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF- 359 (396)
Q Consensus 288 ~y~i~---~----~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f- 359 (396)
+|.+. + ++++|+||+|+|+++++++++.++++||+|++++++|||+|+. +++||+|+|||+|+|+|+|
T Consensus 79 ~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r----~~~Gl~R~reF~~~e~~~~~ 154 (264)
T cd00772 79 LAVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR----PRFGFLRAREFIMKDGHSAH 154 (264)
T ss_pred ceEEEeCCCCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCC----CCCCcceeeEEEEeeeEEec
Confidence 88884 2 5799999999999999999999999999999999999999984 4799999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcC-CcEEEEecccC
Q 016049 360 CQPEESDSYHEELIRIEEDLYSSLG-LHFKLLLFLAE 395 (396)
Q Consensus 360 ~~pe~S~~~~ee~l~~~e~il~~Lg-Lpyrvv~~~t~ 395 (396)
|++++|+++++.|+++++++|+.|| |||+++.+|+.
T Consensus 155 ~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~ 191 (264)
T cd00772 155 ADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEG 191 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCC
Confidence 8899999999999999999999999 99999999874
No 16
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.98 E-value=5.2e-32 Score=284.80 Aligned_cols=198 Identities=17% Similarity=0.215 Sum_probs=170.8
Q ss_pred CCCCCceeeeeeCCCCCC------------CCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHH
Q 016049 186 GGEDCSIIRKTVGNPSVF------------NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLS 253 (396)
Q Consensus 186 g~ee~~~v~~~~g~~~~~------------~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d 253 (396)
|++.+....|-||..-.- ..+.+||++||++++||+|++. ..+|++ ++.+.++.++++|++|+++
T Consensus 104 g~~~~~~l~Riyg~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~~-~~~G~~--~~lP~G~~i~~~L~~~~r~ 180 (545)
T PRK14799 104 HPNPNEQYVRIRGVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEE-AGSGLV--LFHPKGQTIRNELIAFMRE 180 (545)
T ss_pred CCccCceeEEEEEeecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCcccccc-cCCcce--EEcChHHHHHHHHHHHHHH
Confidence 444445567778863211 2357899999999999999872 245554 4555556788999999999
Q ss_pred HHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCCCCCCceEEEecccc
Q 016049 254 EVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCF 331 (396)
Q Consensus 254 ~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cF 331 (396)
.+.++||++|.||.|.+.++|..+||++.+.+ +||.++ +++++|+||+|++++.+|+++..++++||+|++++|+||
T Consensus 181 ~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~-~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vf 259 (545)
T PRK14799 181 INDSMGYQEVYTSHVFKTDIWKISGHYTLYRD-KLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVY 259 (545)
T ss_pred HHHHcCCeEEECCccchHHHHhhccccccchh-hcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEeccee
Confidence 99999999999999999999999999998876 688764 578999999999999999999999999999999999999
Q ss_pred ccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc---EEEE
Q 016049 332 RTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH---FKLL 390 (396)
Q Consensus 332 R~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp---yrvv 390 (396)
|+|+++ .++||+|+|||+|.|+|+||+++++.++..++++++.++|+.||++ |++.
T Consensus 260 R~E~sg---~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ 318 (545)
T PRK14799 260 RWEKKG---ELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPY 318 (545)
T ss_pred cCCCCC---CccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEE
Confidence 999986 7899999999999999999999999899999999999999999995 6654
No 17
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.98 E-value=8.4e-32 Score=289.40 Aligned_cols=176 Identities=20% Similarity=0.354 Sum_probs=161.7
Q ss_pred CCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCC
Q 016049 206 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN 285 (396)
Q Consensus 206 ~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~ 285 (396)
+.+||++||+++|||+|+. +++|+++|++.|..+ .+.|++|+.+.+.++||++|.||.|++.++|.++|+++.+.+
T Consensus 243 ~~~dH~~l~~~~~l~~~~~--~~~G~~~~~p~g~~~--~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~ 318 (639)
T PRK12444 243 AKRNHRKLGKELELFMFSE--EAPGMPFYLPKGQII--RNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKD 318 (639)
T ss_pred ccCCHHHHHHHcCCccccc--ccCcceEEeeCHHHH--HHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhh
Confidence 5689999999999999987 589999876666654 578999999999999999999999999999999999998875
Q ss_pred cccEEEe--CCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc
Q 016049 286 TQVYSIE--GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE 363 (396)
Q Consensus 286 ~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe 363 (396)
+||.++ +++++|+||+|++++++|.+++.++++||+|++++|+|||+|+++ .++||+|+|||+|+|+|+||+++
T Consensus 319 -emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~d~~~f~~~~ 394 (639)
T PRK12444 319 -NMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSG---ALNGLLRVRTFCQDDAHLFVTPD 394 (639)
T ss_pred -hcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCc---CCcCcceeeeeEEccEEEECCHH
Confidence 799653 457899999999999999999999999999999999999999976 48999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCcEEE
Q 016049 364 ESDSYHEELIRIEEDLYSSLGLHFKL 389 (396)
Q Consensus 364 ~S~~~~ee~l~~~e~il~~LgLpyrv 389 (396)
+++++++++++++.++|+.||++|++
T Consensus 395 ~~~~e~~~~~~~~~~i~~~lgl~~~~ 420 (639)
T PRK12444 395 QIEDEIKSVMAQIDYVYKTFGFEYEV 420 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999885
No 18
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.98 E-value=5.3e-32 Score=260.75 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=157.2
Q ss_pred HHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEE
Q 016049 211 FQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYS 290 (396)
Q Consensus 211 ~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~ 290 (396)
.+|+.+.|+++. +|.|++.+.+.+++++++|++++.+.+.+.||++|.+|.|++.++|.++|+++.+.+ +||+
T Consensus 7 ~~l~~~ag~~~~------~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~-emy~ 79 (255)
T cd00779 7 HKLLLRAGFIRQ------TSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGP-ELLR 79 (255)
T ss_pred HHHHHHcCCccc------CCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCc-ccEE
Confidence 368888999852 345566677777888999999999999999999999999999999999999998875 7999
Q ss_pred EeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cchH
Q 016049 291 IEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EESD 366 (396)
Q Consensus 291 i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S~ 366 (396)
+.+ ++++|+||+|.++++++++++.++++||+|++++++|||+|+. +.+||+|+|||+|+|+++||.+ ++|+
T Consensus 80 ~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~----~~~Gl~R~reF~q~e~~~~~~~~~~a~ 155 (255)
T cd00779 80 LKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIR----PRFGLMRGREFLMKDAYSFDIDEESLE 155 (255)
T ss_pred EecCCCCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCC----CCCceeeeeeEeHhhheeccCCHHHHH
Confidence 964 5799999999999999999999999999999999999999974 4689999999999999999997 4899
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 367 SYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 367 ~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+++++++.++.++|+.|||||+++.++++
T Consensus 156 ~~~~~i~~~~~~il~~Lgl~~~~~~~~~~ 184 (255)
T cd00779 156 ETYEKMYQAYSRIFKRLGLPFVKVEADSG 184 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 99999999999999999999999998765
No 19
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.97 E-value=3.3e-31 Score=280.79 Aligned_cols=183 Identities=21% Similarity=0.324 Sum_probs=163.7
Q ss_pred CCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCC
Q 016049 206 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN 285 (396)
Q Consensus 206 ~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~ 285 (396)
+.+||++||+++|||||++++ ++|+. ++.+.++.++++|++++++.+.++||++|.||.|++.++|.+||+++.+.+
T Consensus 168 ~~~dH~~l~~~~~l~~~~~~~-~~G~~--~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~ 244 (563)
T TIGR00418 168 KKRDHRKLGKELELFSFEPEI-GPGLP--FWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKE 244 (563)
T ss_pred hcCCHHHHHHhCCCcccCccc-CCcce--EEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchh
Confidence 357999999999999998752 55554 444455677899999999999999999999999999999999999988775
Q ss_pred cccEEEeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc
Q 016049 286 TQVYSIEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP 362 (396)
Q Consensus 286 ~q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p 362 (396)
+||++.+ +.++|+||+|.++++++.++.+++++||+|++++|+|||+|+++ .++||+|+|||+|+|+++||.+
T Consensus 245 -emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g---~~~Gl~R~reF~q~~~~~~~~~ 320 (563)
T TIGR00418 245 -RMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSG---ELHGLMRVRGFTQDDAHIFCTE 320 (563)
T ss_pred -hcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCc---CCcCcccccceEEeeeEEEcCH
Confidence 7999864 67999999999999999999999999999999999999999664 5899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 363 EESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 363 e~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+++++++.+++.++.++|+.||+++..+.++++
T Consensus 321 ~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~ 353 (563)
T TIGR00418 321 DQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTR 353 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 899999999999999999999999877777653
No 20
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.97 E-value=1.8e-30 Score=235.35 Aligned_cols=148 Identities=32% Similarity=0.569 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHH-HCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---CceEEecCCCHHHHHHHhccccC-C
Q 016049 243 LEMGLINWTLSEVI-KRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQCLIGTAEIPVGGIHMDSILS-E 317 (396)
Q Consensus 243 Le~aLi~~~~d~~~-~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~-~ 317 (396)
|+++|++++.+.+. +.||++|.+|.|++.++|.+||+++.+.+ +||++.+ +++||+||+|.+++.++++...+ +
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~-~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSD-EMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGG-GSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccC-CeeeeeecccccEEeccccccceeeeecceeeecc
Confidence 57899999999999 99999999999999999999999988876 6999976 46999999999999999999999 9
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCC-cEEEEecccC
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGL-HFKLLLFLAE 395 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgL-pyrvv~~~t~ 395 (396)
++||++++++|+|||+|++ .++||+|+|||+|.|+++||+++++.++++++++.+.++++.||| +|+++..+++
T Consensus 80 ~~LP~~~~~~g~~fR~E~~----~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~ 154 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEAR----PTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSG 154 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSS----SBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETC
T ss_pred ccCCeEEeecccccccccc----cccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCC
Confidence 9999999999999999983 689999999999999999999999999999999999999999999 9999998763
No 21
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.4e-29 Score=269.18 Aligned_cols=182 Identities=22% Similarity=0.340 Sum_probs=161.6
Q ss_pred CCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCC
Q 016049 206 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN 285 (396)
Q Consensus 206 ~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~ 285 (396)
+.+||++||+++|||+++. .+|.|++++.+.+++++++|++++.+.+.++||++|.||.|++.++|.++|+++.+.+
T Consensus 174 ~~~dh~~l~~~~~l~~~~~---~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~ 250 (575)
T PRK12305 174 KKRDHRKLGKELDLFSFPD---EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKE 250 (575)
T ss_pred hhccHHHHHHhcCcccccc---ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchh
Confidence 4579999999999999986 3444455555556678899999999999999999999999999999999999988765
Q ss_pred cccEEE---eCCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc
Q 016049 286 TQVYSI---EGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP 362 (396)
Q Consensus 286 ~q~y~i---~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p 362 (396)
+||.+ +++.++|+|+.+.+++.++++...++++||+|++++|+|||+|.++ .++||+|+|||+|+|+++||.+
T Consensus 251 -~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~~~~if~~~ 326 (575)
T PRK12305 251 -NMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSG---VLHGLTRVRGFTQDDAHIFCTP 326 (575)
T ss_pred -hcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCC---CCcCcccccCeEEcceEEEeCH
Confidence 79998 3568999999888899999999888899999999999999999986 5889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 016049 363 EESDSYHEELIRIEEDLYSSLGLHFKLLLFLA 394 (396)
Q Consensus 363 e~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t 394 (396)
+++.+++.++++++.++|+.||++...+.+++
T Consensus 327 ~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~ 358 (575)
T PRK12305 327 DQIEDEILKVLDFVLELLKDFGFKDYYLELST 358 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999999999999999999999955566655
No 22
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.95 E-value=2e-27 Score=252.30 Aligned_cols=177 Identities=19% Similarity=0.190 Sum_probs=155.3
Q ss_pred CCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCc
Q 016049 207 VKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT 286 (396)
Q Consensus 207 ~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~ 286 (396)
..+|. |+.+.|+++. +|.|+|++.+.+.+++++|++++.+.+.+.||++|.+|.|++.++|.++|+++.+.+
T Consensus 20 ~~s~~-ll~~ag~i~~------~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~- 91 (565)
T PRK09194 20 VISHQ-LLLRAGYIRK------LASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGP- 91 (565)
T ss_pred hhhHH-HHHhCCCccc------cCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccch-
Confidence 45786 6666798852 234455566666778899999999999999999999999999999999999998875
Q ss_pred ccEEEeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc
Q 016049 287 QVYSIEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE 363 (396)
Q Consensus 287 q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe 363 (396)
+||++.+ ++++|+||+|.+++.++++++.++++||+|++++++|||+|+. ..+||+|+|||+|+|+++||.++
T Consensus 92 emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~r----p~~Gl~R~reF~q~d~~~f~~~~ 167 (565)
T PRK09194 92 ELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIR----PRFGLMRGREFIMKDAYSFHADE 167 (565)
T ss_pred hceEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCC----CCCcccccccEEEeeEEEEcCCh
Confidence 7999974 6799999999999999999999999999999999999999974 36899999999999999999865
Q ss_pred -chHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 364 -ESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 364 -~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+++++++++++++.++|+.|||||+++..+++
T Consensus 168 ~~a~~~~~~~~~~~~~i~~~lgl~~~~~~~~~g 200 (565)
T PRK09194 168 ESLDETYDAMYQAYSRIFDRLGLDFRAVEADSG 200 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccEEEEcccc
Confidence 45778999999999999999999999987764
No 23
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.4e-27 Score=248.76 Aligned_cols=179 Identities=19% Similarity=0.166 Sum_probs=160.1
Q ss_pred CCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCC
Q 016049 204 NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPR 282 (396)
Q Consensus 204 ~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~ 282 (396)
+|. ..|.+|+++.+|+|+.. ++|+. ++.+.++.+.++|++++.+.+.+.||++|.+|.|++.++|.+ +||++.
T Consensus 13 ~f~-~w~~~~~~~~~l~d~~~---v~G~~--~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~ 86 (477)
T PRK08661 13 DFS-EWYNDVVKKAELADYSP---VKGCM--VIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEG 86 (477)
T ss_pred chH-HHHHHHHHHccCcccCC---CCceE--EECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhh
Confidence 443 57999999999999876 67754 444445677899999999999999999999999999999975 899998
Q ss_pred CCCcccEEEeC-------CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEee
Q 016049 283 GANTQVYSIEG-------ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLE 355 (396)
Q Consensus 283 ~~~~q~y~i~~-------~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE 355 (396)
|.+ +||++.+ ++++|+||+|.+++.++++++.++++||+|++++++|||+|.. ++||+|+|||+|.|
T Consensus 87 f~~-e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-----~rgl~R~rEF~~~E 160 (477)
T PRK08661 87 FAP-EVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-----TRPFLRTREFLWQE 160 (477)
T ss_pred ccc-ccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-----CCCcceeeeEEEcc
Confidence 875 7999963 4699999999999999999999999999999999999999995 67999999999999
Q ss_pred EEE-eCCccchHHHHHHHHHHHHHHH-HHcCCcEEEEeccc
Q 016049 356 MFV-FCQPEESDSYHEELIRIEEDLY-SSLGLHFKLLLFLA 394 (396)
Q Consensus 356 ~f~-f~~pe~S~~~~ee~l~~~e~il-~~LgLpyrvv~~~t 394 (396)
+|. +|+++++.+++.++++++.++| +.|||||+++..|.
T Consensus 161 ~h~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp~~~~~~~~ 201 (477)
T PRK08661 161 GHTAHATEEEAEEETLEMLEIYKEFFEDYLAIPVIIGKKTE 201 (477)
T ss_pred eeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence 987 6889999999999999999999 99999999988764
No 24
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.95 E-value=4.5e-27 Score=249.19 Aligned_cols=177 Identities=20% Similarity=0.225 Sum_probs=157.2
Q ss_pred CCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCc
Q 016049 207 VKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANT 286 (396)
Q Consensus 207 ~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~ 286 (396)
..+|. |+.+.|+++. +|+|+|.+.+.+.++.++|++++++.+.+.||++|.+|.|++.++|.++|+++.+.+
T Consensus 20 ~~s~~-ll~rag~i~~------~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~- 91 (568)
T TIGR00409 20 VKSHQ-LLLRAGFIRR------LGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGP- 91 (568)
T ss_pred hhhHH-HHHhCCCccc------cCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccch-
Confidence 45675 7778899852 345566666777788899999999999999999999999999999999999998765
Q ss_pred ccEEEeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc
Q 016049 287 QVYSIEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE 363 (396)
Q Consensus 287 q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe 363 (396)
+||++.+ ++++|+||+|.+++.++++++.++++||+|++++++|||+|+. ..+||+|+|||+|.|++.||.++
T Consensus 92 emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~r----pr~Gl~R~REF~~~d~~~f~~~~ 167 (568)
T TIGR00409 92 ELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIR----PRFGLMRGREFIMKDAYSFHSDE 167 (568)
T ss_pred hcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCC----CCCCccccccEEEEEEEEEeCCh
Confidence 8999975 5799999999999999999999999999999999999999975 36899999999999999999974
Q ss_pred -chHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 364 -ESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 364 -~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+++++++.|+..+.++|+.|||||+++.++++
T Consensus 168 ~~a~~e~~~~~~~y~~if~~LgL~~~~v~~~~g 200 (568)
T TIGR00409 168 ESLDATYQKMYQAYSNIFSRLGLDFRPVQADSG 200 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcceEEEeccc
Confidence 46679999999999999999999999988764
No 25
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.94 E-value=5.3e-27 Score=244.07 Aligned_cols=180 Identities=20% Similarity=0.198 Sum_probs=157.9
Q ss_pred CCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh-ccCCC
Q 016049 204 NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC-GFQPR 282 (396)
Q Consensus 204 ~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s-G~~p~ 282 (396)
+|....| +|+.+.||+|+.. ++|+.+| +|.+.. +.+.|.+++.+.+.+.||++|.+|.|++.++|.++ ||++.
T Consensus 7 ~f~~wy~-~l~~~~~li~~~~---~~G~~~~-lP~g~~-i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~ 80 (472)
T TIGR00408 7 DFSEWYH-QILEKAEIIDYYP---VKGCYVW-LPYGFK-IWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKG 80 (472)
T ss_pred cHHHHHH-HHHHHcCCccccC---CCceEEE-CcCHHH-HHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhh
Confidence 4544444 7999999999843 7998864 444443 46899999999999999999999999999999986 48888
Q ss_pred CCCcccEEEeC-------CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEee
Q 016049 283 GANTQVYSIEG-------ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLE 355 (396)
Q Consensus 283 ~~~~q~y~i~~-------~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE 355 (396)
|.+ +||++.+ ++++|+||+|.+++.+|++++.++++||+|++++++|||+|..+ ++||+|+|||+|.|
T Consensus 81 f~~-e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~----~~gl~R~rEF~~~e 155 (472)
T TIGR00408 81 FEP-EVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKH----TRPFLRTREFTWQE 155 (472)
T ss_pred cch-hcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCC----CCCcceeeeeehhh
Confidence 765 7999964 57999999999999999999999999999999999999999963 68999999999999
Q ss_pred EE-EeCCccchHHHHHHHHHHHHHHHH-HcCCcEEEEeccc
Q 016049 356 MF-VFCQPEESDSYHEELIRIEEDLYS-SLGLHFKLLLFLA 394 (396)
Q Consensus 356 ~f-~f~~pe~S~~~~ee~l~~~e~il~-~LgLpyrvv~~~t 394 (396)
+| .+|+++++.+++..+++++.++|+ .|||||+++..|.
T Consensus 156 ~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~ 196 (472)
T TIGR00408 156 AHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPE 196 (472)
T ss_pred hhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCc
Confidence 98 589999999999999999999998 9999999887763
No 26
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.94 E-value=1.3e-26 Score=239.18 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=154.2
Q ss_pred CCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCC
Q 016049 206 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN 285 (396)
Q Consensus 206 ~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~ 285 (396)
+..+|.-|. +.|+++.. .+|+ |++.+.+.++.++|++++.+.+.+.||++|.||.|.+.++|+.+|+++.+.+
T Consensus 19 ~~~~~~ll~-r~g~~~~~----~~G~--~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~ 91 (439)
T PRK12325 19 EIVSHRLML-RAGMIRQQ----AAGI--YSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGK 91 (439)
T ss_pred chHHHHHHH-HcCCcccc----CCce--EEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccch
Confidence 356887555 55988631 4565 4444455677899999999999999999999999999999999999998775
Q ss_pred cccEEEe---CCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc
Q 016049 286 TQVYSIE---GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP 362 (396)
Q Consensus 286 ~q~y~i~---~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p 362 (396)
+||++. +++++|+||+|..++.++++++.++++||+|++++++|||+|..+ ..||+|+|||+|.|+|+||.+
T Consensus 92 -emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~----~~GL~R~reF~~~D~h~f~~~ 166 (439)
T PRK12325 92 -EMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRP----RFGVMRGREFLMKDAYSFDLD 166 (439)
T ss_pred -hheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCC----CCCccccceEeEeccEEEeCC
Confidence 799986 467999999999999999999999999999999999999999753 479999999999999999765
Q ss_pred -cchHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 363 -EESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 363 -e~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+++.+++.++++++.++|+.|||+|..+.++++
T Consensus 167 ~~~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~ 200 (439)
T PRK12325 167 EEGARHSYNRMFVAYLRTFARLGLKAIPMRADTG 200 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEEEEEccC
Confidence 678999999999999999999999888876543
No 27
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.93 E-value=7.7e-26 Score=213.07 Aligned_cols=149 Identities=27% Similarity=0.425 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC-------CceEEecCCCHHHHHHHhcc
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG-------ADQCLIGTAEIPVGGIHMDS 313 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~-------~~l~L~pTaEvpl~~l~~~~ 313 (396)
+.++++|++++.+.+.+.||++|.||.|++.++|.++||...+.+ +||++.+ +.++|+||+|+|++.+++++
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~ 80 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRK-EMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGE 80 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchh-hcCeeccCcccccCCeEEEecCCCHHHHHHHhcc
Confidence 467899999999999999999999999999999999998877765 7999964 56999999999999999999
Q ss_pred ccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 016049 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFL 393 (396)
Q Consensus 314 ~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~ 393 (396)
..++++||+|++++|+|||+|+++. +|+.|+|||+|+|+++||.++++.+++.++++++.++|+.||++|++...+
T Consensus 81 ~~~~~~lP~r~~~~g~~fR~E~~~~----~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i~~~~ 156 (235)
T cd00670 81 ILSYRALPLRLDQIGPCFRHEPSGR----RGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVAD 156 (235)
T ss_pred CccchhcCeeeeeecccccCCCCCC----CCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 8888999999999999999999863 799999999999999999998899999999999999999999999998765
Q ss_pred c
Q 016049 394 A 394 (396)
Q Consensus 394 t 394 (396)
.
T Consensus 157 ~ 157 (235)
T cd00670 157 D 157 (235)
T ss_pred C
Confidence 4
No 28
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=1.2e-25 Score=241.64 Aligned_cols=176 Identities=25% Similarity=0.440 Sum_probs=156.4
Q ss_pred CCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCC
Q 016049 206 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN 285 (396)
Q Consensus 206 ~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~ 285 (396)
+.+||.+||+++++++|+.. ++|+++ |+|.+ +.++++|++++.+.+.++||++|.||.|++.++|.++|++..+.+
T Consensus 239 ~~~~h~~l~~~~~~~~~~~~--~~G~~~-~lp~~-~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~ 314 (638)
T PRK00413 239 KKRDHRKLGKELDLFHFQEE--APGLPF-WHPKG-WTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRE 314 (638)
T ss_pred ccccHHHHHHhcCEEEecCC--CCcceE-EcccH-HHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhh
Confidence 35699999999999999986 488874 55554 467899999999999999999999999999999999998877654
Q ss_pred cccEEEe---CCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc
Q 016049 286 TQVYSIE---GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP 362 (396)
Q Consensus 286 ~q~y~i~---~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p 362 (396)
+||.+. ++.++|+|+.+.+++.++.++..++++||+|++++|+|||+|.++ ..+||.|+|||+|+|+++||.+
T Consensus 315 -~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~---~~~Gl~R~reF~q~~~~~~g~~ 390 (638)
T PRK00413 315 -NMFPTTESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG---ALHGLMRVRGFTQDDAHIFCTP 390 (638)
T ss_pred -ccceeecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC---CCcCcceeeeeEEeeEEEEcCH
Confidence 799984 467999998888889999999888889999999999999999986 3689999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCc-EEE
Q 016049 363 EESDSYHEELIRIEEDLYSSLGLH-FKL 389 (396)
Q Consensus 363 e~S~~~~ee~l~~~e~il~~LgLp-yrv 389 (396)
+++.+++.+++.++.++|+.||++ |++
T Consensus 391 ~~~~~e~~eii~l~~~~~~~lg~~~~~i 418 (638)
T PRK00413 391 EQIEEEVKKVIDLILDVYKDFGFEDYEV 418 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 888888899999999999999995 654
No 29
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.4e-24 Score=224.35 Aligned_cols=178 Identities=23% Similarity=0.393 Sum_probs=157.3
Q ss_pred CCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCC
Q 016049 206 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN 285 (396)
Q Consensus 206 ~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~ 285 (396)
..+||+.||+++|||+|+.. ..+|+.+|+.+|. .+.+.|++|+...+.++||++|.||.|++.++|+.+||+..+.+
T Consensus 188 ~krdHrklg~el~LF~~~~~-~~~G~~~~~pkG~--~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e 264 (589)
T COG0441 188 KKRDHRKLGKELDLFSFSPE-EGPGLPFWHPKGA--TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKE 264 (589)
T ss_pred cCCchHhHHHhhcceeeccc-cCCcceEECCCcc--cHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccc
Confidence 46899999999999999852 3678887666665 34789999999999999999999999999999999999998876
Q ss_pred cccEEEeC--CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc
Q 016049 286 TQVYSIEG--ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE 363 (396)
Q Consensus 286 ~q~y~i~~--~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe 363 (396)
.||.+.. ++++|.|..+..-+.++.+...++++||+|++++|.|||+|.++ ...||.|||.|+|.++|+||+++
T Consensus 265 -~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SG---al~GL~RvR~ftqdDaHifc~~d 340 (589)
T COG0441 265 -DMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSG---ALHGLMRVRGFTQDDAHIFCTPD 340 (589)
T ss_pred -cceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCcc---hhhccccccceeecccceeccHH
Confidence 6887763 56788776555567789999999999999999999999999986 68999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCc-EEEE
Q 016049 364 ESDSYHEELIRIEEDLYSSLGLH-FKLL 390 (396)
Q Consensus 364 ~S~~~~ee~l~~~e~il~~LgLp-yrvv 390 (396)
|..+++..+++.+..+++.||+. |++.
T Consensus 341 Qi~~E~~~~~~~i~~v~~~fg~~~y~~~ 368 (589)
T COG0441 341 QIKDEFKGILELILEVYKDFGFTDYEVK 368 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999999999999999999998 6654
No 30
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=5.2e-24 Score=214.02 Aligned_cols=177 Identities=27% Similarity=0.445 Sum_probs=156.0
Q ss_pred CCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCC
Q 016049 206 PVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN 285 (396)
Q Consensus 206 ~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~ 285 (396)
..+||+.||++++||.|... -+|+.| |||.+ +++...|+.|++..+.++||++|.||.|.+..+|+.||||..+.+
T Consensus 161 ~~rdHRkig~~qeLfff~~l--SPGS~F-flP~G-~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~e 236 (560)
T KOG1637|consen 161 KKRDHRKIGKEQELFFFHEL--SPGSCF-FLPHG-TRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSE 236 (560)
T ss_pred hhhhhhhhhhhhhheeeccC--CCccee-eccCc-chHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhh
Confidence 46899999999999999885 578887 56664 466899999999999999999999999999999999999999876
Q ss_pred cccEEEeC-CceEEecCCCHH-HHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc
Q 016049 286 TQVYSIEG-ADQCLIGTAEIP-VGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE 363 (396)
Q Consensus 286 ~q~y~i~~-~~l~L~pTaEvp-l~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe 363 (396)
.||+++. .+-+....+.|| .+-|++.+..++++||+|++.+|..+|+|+++ ...||.|||.|+|.+.|+||+++
T Consensus 237 -nmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SG---aLsGLTRvRrFqQDDaHIFCt~~ 312 (560)
T KOG1637|consen 237 -NMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASG---ALSGLTRVRRFQQDDAHIFCTPD 312 (560)
T ss_pred -hceeeeechhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccc---cccccceeeeecccCceEEecCc
Confidence 6999875 233455567777 56678888899999999999999999999986 57899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHcCCcEEEE
Q 016049 364 ESDSYHEELIRIEEDLYSSLGLHFKLL 390 (396)
Q Consensus 364 ~S~~~~ee~l~~~e~il~~LgLpyrvv 390 (396)
|.+++...+++..+.+|.-+|..|...
T Consensus 313 Qi~~Eik~~l~fl~~vY~~fgf~f~l~ 339 (560)
T KOG1637|consen 313 QVKEEIKGCLDFLDYVYGVFGFTFKLN 339 (560)
T ss_pred cHHHHHHHHHHHHHHHHHhccccceeE
Confidence 999999999999999999999887653
No 31
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.89 E-value=9.6e-23 Score=211.29 Aligned_cols=175 Identities=17% Similarity=0.257 Sum_probs=138.3
Q ss_pred HHHhhhcCccccccccccCC-cceeecchHHHHHHHHHHHHHHHHHHH--CCCEeeecCCccchHHHHhhccCCCCCCcc
Q 016049 211 FQLGKALDIFDFDAAAEVSG-SKFYYLKNEAVMLEMGLINWTLSEVIK--RGFTPLTTPEIVRSSVVEKCGFQPRGANTQ 287 (396)
Q Consensus 211 ~eLg~~l~l~df~~~akvsG-~rf~~l~g~~a~Le~aLi~~~~d~~~~--~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q 287 (396)
.+++++.|++ |++.--..| ++||.+.+.|+.|.+.|++|+++.+.. .||.+|.||.|.+.++|++|||+.+|.+ .
T Consensus 8 ~~~~~~~~~~-~~s~~iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d-~ 85 (456)
T PRK04173 8 VSLAKRRGFV-FPSSEIYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSD-P 85 (456)
T ss_pred HHHHHhcCCe-eeccccccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCC-c
Confidence 3567777765 333212222 345555555677889999999999876 7999999999999999999999999876 4
Q ss_pred cEEEeC------------------------------------------------------------------CceEEec-
Q 016049 288 VYSIEG------------------------------------------------------------------ADQCLIG- 300 (396)
Q Consensus 288 ~y~i~~------------------------------------------------------------------~~l~L~p- 300 (396)
||.... ...||+|
T Consensus 86 m~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpe 165 (456)
T PRK04173 86 LVECKKCKKRYRADHLIEELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPE 165 (456)
T ss_pred eeEeCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccc
Confidence 775420 0235666
Q ss_pred CCCHHHHHHHhccccCCC-CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHH
Q 016049 301 TAEIPVGGIHMDSILSES-LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDL 379 (396)
Q Consensus 301 TaEvpl~~l~~~~~l~~~-~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~i 379 (396)
||+..+.+ |+....+++ +||++++++|+|||+|+++ ..||+|+|||+|.|+|+||+|+++.+++..+++.+.++
T Consensus 166 taqg~~~~-f~~~~~syr~dLPlr~aq~g~~~RnE~s~----~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~ 240 (456)
T PRK04173 166 TAQGIFVN-FKNVLRTARKKLPFGIAQIGKSFRNEITP----RNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNW 240 (456)
T ss_pred cchhHHHH-HHHHHHhccccCCeeeeEEchhHhCccCC----CCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHH
Confidence 34444443 666777899 9999999999999999885 37999999999999999999999999999999999999
Q ss_pred HHHcCCc---EEEEec
Q 016049 380 YSSLGLH---FKLLLF 392 (396)
Q Consensus 380 l~~LgLp---yrvv~~ 392 (396)
|..||++ +++...
T Consensus 241 l~~lG~~~~~~~~s~~ 256 (456)
T PRK04173 241 LLDLGIDPENLRFREH 256 (456)
T ss_pred HHHcCCCccceEEEec
Confidence 9999998 665554
No 32
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.1e-22 Score=206.74 Aligned_cols=177 Identities=19% Similarity=0.178 Sum_probs=157.8
Q ss_pred CCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCC
Q 016049 204 NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRG 283 (396)
Q Consensus 204 ~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~ 283 (396)
+|+..+|. |+.+.|++|. .++|.. .|+|-+... .+.+.+.+++.+.+.|.+++..|.|++.++|+.+|++..|
T Consensus 17 da~~~sh~-ll~rAg~i~~----~~~G~y-~~lP~g~rv-~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f 89 (500)
T COG0442 17 DASEWSHQ-LLLRAGMIRK----PVKGLY-VWLPLGLRV-LEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGF 89 (500)
T ss_pred hhHHHHHH-HHHhcCceec----ccCceE-EECccHHHH-HHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhc
Confidence 56677885 8888999997 268875 467766654 5899999999999999999999999999999999999988
Q ss_pred CCcccEEEeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC
Q 016049 284 ANTQVYSIEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC 360 (396)
Q Consensus 284 ~~~q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~ 360 (396)
.+ +||++.+ ++++|+||+|..++.++++++.|+++||++++++.+.||+|..+ ++||+|.|||.+-|.|.|.
T Consensus 90 ~~-El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rp----r~gllR~REF~mkdaySfh 164 (500)
T COG0442 90 GP-ELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRP----RFGLLRGREFLMKDAYSFH 164 (500)
T ss_pred ch-hhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccC----CCCccchheeeeccccccc
Confidence 75 7999985 57999999999999999999999999999999999999999974 8999999999999999997
Q ss_pred Cc-cchHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 016049 361 QP-EESDSYHEELIRIEEDLYSSLGLHFKLLLF 392 (396)
Q Consensus 361 ~p-e~S~~~~ee~l~~~e~il~~LgLpyrvv~~ 392 (396)
.. +++++.+++|++.+.+||..+|+.|+.+..
T Consensus 165 ~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~~~a 197 (500)
T COG0442 165 ADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPA 197 (500)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCceEEeecc
Confidence 65 678999999999999999988888887654
No 33
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=99.85 E-value=3.3e-21 Score=162.48 Aligned_cols=106 Identities=32% Similarity=0.519 Sum_probs=94.6
Q ss_pred ccchHHHhcCHHHHHHHHHccC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-CchhHHHHHHHHHhHH
Q 016049 74 AIDFKWIRDNKEAVSANIRNRN-SNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKL-EPSERQKLIEEGKNLK 151 (396)
Q Consensus 74 mlD~~~ir~n~e~v~~~l~~R~-~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~-~~~~~~~l~~~~~~lk 151 (396)
|||+++||+|||.|++++++|+ ...++|+|+++|++||++++++++|+++||.+|++|+... .+++.++++++++.++
T Consensus 1 MLDik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk 80 (108)
T PF02403_consen 1 MLDIKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELK 80 (108)
T ss_dssp --SHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHH
T ss_pred CCCHHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 8999999999999999999997 4578999999999999999999999999999999998743 4578899999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016049 152 EGLVTLEEDLVKLTDELQQEAQCIPNMT 179 (396)
Q Consensus 152 ~~l~~le~~~~~l~~~l~~~~~~lPN~~ 179 (396)
++++++++++.+++++++.+++.|||+|
T Consensus 81 ~~i~~le~~~~~~e~~l~~~l~~iPNip 108 (108)
T PF02403_consen 81 EEIKELEEQLKELEEELNELLLSIPNIP 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999996
No 34
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.78 E-value=1.1e-18 Score=168.31 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=124.6
Q ss_pred HHHhhhcCccccccc--cccCCcceeecchHHHHHHHHHHHHHHHHHHHCC--CEeeecCCccchHHHHh-hccCCCCCC
Q 016049 211 FQLGKALDIFDFDAA--AEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRG--FTPLTTPEIVRSSVVEK-CGFQPRGAN 285 (396)
Q Consensus 211 ~eLg~~l~l~df~~~--akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~G--y~ei~tP~lv~~~~~~~-sG~~p~~~~ 285 (396)
++|+++.|++..... .-++|+.. |+|. ++.+.++|++++.+.+.+.| |.+|.||+|++.+++.. .|+..+
T Consensus 2 ~~l~~~~g~~~~~~eiy~~~~G~~d-~~P~-g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d~--- 76 (254)
T cd00774 2 VELAKRRGFVFPSSEIYGGVAGFYD-YGPL-GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVES--- 76 (254)
T ss_pred HhHHhhcCCcccChhhccChhcccc-cCch-HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccCC---
Confidence 367788887743210 11467653 4444 45678999999999999885 99999999999977764 354321
Q ss_pred cccEEEeCCceEEecCCC----HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC
Q 016049 286 TQVYSIEGADQCLIGTAE----IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ 361 (396)
Q Consensus 286 ~q~y~i~~~~l~L~pTaE----vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~ 361 (396)
.+++++|+|+.+ +++.+... ...++||++++++|+|||+|.++. .||.|+|||+|.|+++||+
T Consensus 77 ------~~~~~~Lrp~~~~~~~~~~~~~~~---~~~~~lP~~~~qig~~fR~E~~~~----~gl~R~ReF~q~d~~~f~~ 143 (254)
T cd00774 77 ------GGNLGYLRPETAQGIFVNFKNLLE---FNRRKLPFGVAQIGKSFRNEISPR----NGLFRVREFTQAEIEFFVD 143 (254)
T ss_pred ------CCcccccCCcccchHHHHHHHHHH---HhCCCCCchhhhhchhhccccCcc----cceeeeccchhhheeeeEC
Confidence 124689999766 34444332 223599999999999999999753 7999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCc---EEEEec
Q 016049 362 PEESDSYHEELIRIEEDLYSSLGLH---FKLLLF 392 (396)
Q Consensus 362 pe~S~~~~ee~l~~~e~il~~LgLp---yrvv~~ 392 (396)
|+++.+++..+++.+..+|+.+|++ +|+...
T Consensus 144 ~~~~~e~~~~v~~~~~~~l~~~G~~~~~~r~~~~ 177 (254)
T cd00774 144 PEKSHPWFDYWADQRLKWLPKFAQSPENLRLTDH 177 (254)
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCCccceEEEec
Confidence 9999999999999999999999974 444443
No 35
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.74 E-value=3.5e-17 Score=168.88 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=127.4
Q ss_pred ccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh-c-cCCCCCCcccEEEe---CCceEEecC
Q 016049 227 EVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC-G-FQPRGANTQVYSIE---GADQCLIGT 301 (396)
Q Consensus 227 kvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s-G-~~p~~~~~q~y~i~---~~~l~L~pT 301 (396)
...|++ .+++.+... .+.+++.+.+.+.++||++|.||.|...++|... | ++.... ++||++. |+.++|+|.
T Consensus 6 ~p~G~~-D~lp~~~~~-~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~-~~my~~~d~~g~~l~LRpd 82 (430)
T CHL00201 6 AIRGTK-DILPDEINY-WQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVN-KEMYRFTDRSNRDITLRPE 82 (430)
T ss_pred CCCCCC-cCCHHHHHH-HHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccc-cceEEEEcCCCCEEEeCCC
Confidence 368999 478887654 6899999999999999999999999999999864 6 433222 4799986 357999999
Q ss_pred CCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHH
Q 016049 302 AEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYS 381 (396)
Q Consensus 302 aEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~ 381 (396)
.++|+++++.....+..++|+|++++|+|||+|.++.| |+|||+|+...+|+.++...+ .|++.++.++|+
T Consensus 83 ~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~G-------R~Ref~Q~g~EiiG~~~~~aD--~Evi~l~~~~l~ 153 (430)
T CHL00201 83 GTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSG-------RQRQFHQLGIEFIGSIDARAD--TEVIHLAMQIFN 153 (430)
T ss_pred CcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCC-------ccceeEEeceEEECCCChhhH--HHHHHHHHHHHH
Confidence 99999999876655677899999999999999999877 899999999999988754433 689999999999
Q ss_pred HcCCc-EEEE
Q 016049 382 SLGLH-FKLL 390 (396)
Q Consensus 382 ~LgLp-yrvv 390 (396)
.||++ |++.
T Consensus 154 ~lGl~~~~i~ 163 (430)
T CHL00201 154 ELQVKNLILD 163 (430)
T ss_pred HcCCCceEEE
Confidence 99996 6654
No 36
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.3e-17 Score=163.87 Aligned_cols=174 Identities=20% Similarity=0.249 Sum_probs=147.6
Q ss_pred HHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEE
Q 016049 211 FQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYS 290 (396)
Q Consensus 211 ~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~ 290 (396)
.+|..+.|++.-. ..| +|-+-+-+.+--..+.+.+...+.+.|-+.|..|.+-..++|+++|.|..... ++|+
T Consensus 28 q~LL~e~GfI~ps----~~G--~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gs-El~r 100 (457)
T KOG2324|consen 28 QELLQEVGFIRPS----SPG--LYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGS-ELFR 100 (457)
T ss_pred HHHHHHhCccccC----CCC--ceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccch-hheE
Confidence 3588889988532 234 44333344455578999888899999999999999999999999999976553 7999
Q ss_pred EeC---CceEEecCCCHHHHHHHhccc-cCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cch
Q 016049 291 IEG---ADQCLIGTAEIPVGGIHMDSI-LSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EES 365 (396)
Q Consensus 291 i~~---~~l~L~pTaEvpl~~l~~~~~-l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S 365 (396)
+-| ..+||.||.|..++++.++.+ +++++||+++|++|+.||.|..++| ||+|-|||-|-+|+.|... |.+
T Consensus 101 l~Dr~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRf----GLlRgREFlMKDmYsFd~~~etA 176 (457)
T KOG2324|consen 101 LHDRKGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRF----GLLRGREFLMKDMYSFDSDEETA 176 (457)
T ss_pred eeccCCCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccc----cchhhHHHHHhhhhcccCCHHHH
Confidence 975 579999999999999888764 4999999999999999999999866 9999999999999999765 568
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 366 DSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 366 ~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
.+.|..+.+.+..||++||+||..|...++
T Consensus 177 ~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG 206 (457)
T KOG2324|consen 177 QQTYQLVDQAYDRIFKQLGLPFVKVWADSG 206 (457)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeccc
Confidence 999999999999999999999999987664
No 37
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6.4e-17 Score=165.82 Aligned_cols=151 Identities=21% Similarity=0.333 Sum_probs=125.1
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
..|++ .|+|.+... ++.+++.+.+.+.++||.+|.||.|+..+++.+ +|-..+.-..+||.+.| +.+.|+|..+
T Consensus 7 prG~~-D~lp~d~~~-~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~T 84 (429)
T COG0124 7 PRGTR-DFLPEDMAL-REYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELT 84 (429)
T ss_pred CCCcc-ccChHHHHH-HHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCc
Confidence 68998 578888764 689999999999999999999999999999985 67554333357999975 5799999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc-chHHHHHHHHHHHHHHHHH
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE-ESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe-~S~~~~ee~l~~~e~il~~ 382 (396)
.|+++++..+.+... .|+|++++++|||+|.+++| |.|||+|+..-++..+. .++ .|++.++.++|++
T Consensus 85 apv~R~~~en~~~~~-~p~k~yy~g~vfRyErPQ~G-------R~RqF~Q~g~E~iG~~~~~~D---AEvi~l~~~~l~~ 153 (429)
T COG0124 85 APVARAVAENKLDLP-KPLKLYYFGPVFRYERPQKG-------RYRQFYQFGVEVIGSDSPDAD---AEVIALAVEILEA 153 (429)
T ss_pred HHHHHHHHhcccccc-CCeeEEEecceecCCCCCCC-------CceeeEEcCeEEeCCCCcccC---HHHHHHHHHHHHH
Confidence 999999987755444 89999999999999999999 89999996665555443 233 4799999999999
Q ss_pred cCCc-EEEEe
Q 016049 383 LGLH-FKLLL 391 (396)
Q Consensus 383 LgLp-yrvv~ 391 (396)
|||. |++..
T Consensus 154 lGi~~~~l~i 163 (429)
T COG0124 154 LGIGGFTLEI 163 (429)
T ss_pred cCCCcEEEEE
Confidence 9997 76643
No 38
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.66 E-value=2.1e-15 Score=145.51 Aligned_cols=136 Identities=20% Similarity=0.295 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---CceEEecCCCHHHHHHHhccccCCC
Q 016049 242 MLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 242 ~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
.+.+.|.+.+.+.+.++||++|.||.+++.+++.++| .+.. .+++|++.+ +.++|+|++++|++++++....+ .
T Consensus 3 ~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~-~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~ 79 (261)
T cd00773 3 ALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEV-SKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLS-L 79 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc-cccc-cceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCcc-C
Confidence 4568999999999999999999999999999998876 3323 347999864 57999999999999999876544 6
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc-EEE
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH-FKL 389 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp-yrv 389 (396)
++|+|++++|+|||+|.++.| |.+||+|+...+|+.... ....|++.++.++++.||++ +++
T Consensus 80 ~~p~k~~y~g~vfR~e~~~~g-------~~re~~Q~g~Eiig~~~~--~~daE~i~l~~~~l~~lg~~~~~i 142 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQKG-------RYREFYQVGVEIIGSDSP--LADAEVIALAVEILEALGLKDFQI 142 (261)
T ss_pred CCCeEEEEEcCEEecCCCCCC-------CccceEEeceeeeCCCCh--HHHHHHHHHHHHHHHHcCCCceEE
Confidence 799999999999999988655 789999988888877432 33378999999999999986 554
No 39
>PLN02530 histidine-tRNA ligase
Probab=99.63 E-value=4.9e-15 Score=155.19 Aligned_cols=155 Identities=17% Similarity=0.256 Sum_probs=124.9
Q ss_pred CccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---
Q 016049 218 DIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG--- 293 (396)
Q Consensus 218 ~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~--- 293 (396)
.++++.. ..|++. |++.+. .+.+.|++.+.+.+.++||++|.||.|+..+++.+ .|.. ...+||.+.+
T Consensus 66 ~~~~~~~---p~G~~D-~lp~~~-~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~---~~~~~y~f~D~~g 137 (487)
T PLN02530 66 PKIDVNP---PKGTRD-FPPEDM-RLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEE---ITDQLYNFEDKGG 137 (487)
T ss_pred cccccCC---CCCcCc-CCHHHH-HHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcc---cccceEEEECCCC
Confidence 3444443 689995 677665 45789999999999999999999999999999985 4543 2347999864
Q ss_pred CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHH
Q 016049 294 ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373 (396)
Q Consensus 294 ~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l 373 (396)
+.++|+|..++|+++++..... ..++|+|+|++|+|||+|..+.| |.|||+|+.+.+|+.+... ...|++
T Consensus 138 ~~l~LRpD~T~~iaR~~~~~~~-~~~~P~r~~y~g~vfR~e~~q~g-------r~REf~Q~giEiiG~~~~~--aDaEvi 207 (487)
T PLN02530 138 RRVALRPELTPSLARLVLQKGK-SLSLPLKWFAIGQCWRYERMTRG-------RRREHYQWNMDIIGVPGVE--AEAELL 207 (487)
T ss_pred CEEecCCCCcHHHHHHHHhccc-ccCCCeEEEEEcCEEcCcCCCCC-------CccceEEcCeeEeCCCCcc--hhHHHH
Confidence 5799999999999999886533 23699999999999999998877 7999999888888766432 225899
Q ss_pred HHHHHHHHHcCCc---EEEE
Q 016049 374 RIEEDLYSSLGLH---FKLL 390 (396)
Q Consensus 374 ~~~e~il~~LgLp---yrvv 390 (396)
.++.++|+.||++ |++.
T Consensus 208 ~l~~~~l~~lgl~~~~~~i~ 227 (487)
T PLN02530 208 AAIVTFFKRVGITSSDVGIK 227 (487)
T ss_pred HHHHHHHHHcCCCCCceEEE
Confidence 9999999999995 6653
No 40
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.61 E-value=1e-14 Score=149.17 Aligned_cols=144 Identities=20% Similarity=0.267 Sum_probs=117.7
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh-ccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC-GFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s-G~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
..|++. |++.+.. ..+.+++.+.+.+.++||++|.||.+.+.++|... |+......++||++.+ +.++|+|+.+
T Consensus 7 p~G~~d-~~p~~~~-~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T 84 (412)
T PRK00037 7 PRGTRD-ILPEESA-KWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGT 84 (412)
T ss_pred CCCCCc-CCHHHHH-HHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCc
Confidence 578874 6666554 56899999999999999999999999999999764 6553222347999864 5799999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
+|++.+++... .+|+|+|++|+|||+|..+.| |.+||+|++.++|+.++.. .-.|++.++.++|+.|
T Consensus 85 ~~~ar~~~~~~----~~p~r~~~~g~vfR~e~~~~g-------r~ref~Q~g~ei~g~~~~~--~d~E~i~~~~~~l~~l 151 (412)
T PRK00037 85 APVVRAVIEHK----LQPFKLYYIGPMFRYERPQKG-------RYRQFHQFGVEVIGSDSPL--ADAEVIALAADILKAL 151 (412)
T ss_pred HHHHHHHHhCC----CCCeEEEEEcCccccCCCCCC-------cccceEEcCeeeeCCCCcc--hhHHHHHHHHHHHHHc
Confidence 99999887542 199999999999999987655 7999999999999877532 2246899999999999
Q ss_pred CCc
Q 016049 384 GLH 386 (396)
Q Consensus 384 gLp 386 (396)
|++
T Consensus 152 g~~ 154 (412)
T PRK00037 152 GLK 154 (412)
T ss_pred CCC
Confidence 997
No 41
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.59 E-value=2.1e-14 Score=146.23 Aligned_cols=151 Identities=19% Similarity=0.248 Sum_probs=121.7
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh-ccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC-GFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s-G~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
..|++. +++.+.. +.+.+++.+.+.+.++||++|.||.+...++|.+. |.......+++|++.+ +.++|+|+.+
T Consensus 3 p~G~~d-~~p~~~~-~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 3 PRGTRD-FLPEEMI-KWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCCcCC-CCHHHHH-HHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCc
Confidence 468874 6666654 56899999999999999999999999999999875 3332212347999864 5799999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
+|++++++... ...++|+|++++|+|||+|....| |.+||+|++..+++.++... -.|++.++.++++.|
T Consensus 81 ~~iaR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~g-------r~ref~Q~g~eiig~~~~~~--d~E~i~l~~e~l~~l 150 (397)
T TIGR00442 81 APVARAVIENK-LLLPKPFKLYYIGPMFRYERPQKG-------RYRQFHQFGVEVIGSDSPLA--DAEIIALAAEILKEL 150 (397)
T ss_pred HHHHHHHHhcc-cccCCCeEEEEEcCeecCCCCCCC-------cccceEEcCeeeeCCCCHHH--HHHHHHHHHHHHHHc
Confidence 99999987652 456789999999999999987654 79999999999998775322 258999999999999
Q ss_pred CCc-EEEE
Q 016049 384 GLH-FKLL 390 (396)
Q Consensus 384 gLp-yrvv 390 (396)
|++ +++.
T Consensus 151 g~~~~~i~ 158 (397)
T TIGR00442 151 GIKDFTLE 158 (397)
T ss_pred CCCceEEE
Confidence 997 6654
No 42
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.56 E-value=4.5e-14 Score=145.41 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=119.5
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
..|++. |++.+... .+.+.+-+.+.+.++||.+|.||.|...+++.. .|...... .++|++.+ +.++|+|.++
T Consensus 7 p~G~~d-~~p~~~~~-~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~l~LRpD~T 83 (423)
T PRK12420 7 VKGTKD-YLPEEQVL-RNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEIL-KEIYTLTDQGKRDLALRYDLT 83 (423)
T ss_pred CCCCCC-CCHHHHHH-HHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccc-cceEEEecCCCceeccccccc
Confidence 689995 77777654 689999999999999999999999999999975 34332222 47999874 5699999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
+|++++++... ...+|+|+|++|+|||+|..+.| |.+||.|+.+.+|+.+.... ..|++.++.++++.|
T Consensus 84 ~~iaR~va~~~--~~~~p~r~~y~g~vfR~~~~~~g-------r~rE~~Q~g~EiiG~~~~~a--daEvi~la~~~l~~l 152 (423)
T PRK12420 84 IPFAKVVAMNP--NIRLPFKRYEIGKVFRDGPIKQG-------RFREFIQCDVDIVGVESVMA--EAELMSMAFELFRRL 152 (423)
T ss_pred HHHHHHHHhCc--CCCCCeeEEEEcceECCCCCCCC-------ccceeEECCeeeECCCCCcc--cHHHHHHHHHHHHHC
Confidence 99999887652 34689999999999999987766 79999997666666543222 268999999999999
Q ss_pred CCcEEEE
Q 016049 384 GLHFKLL 390 (396)
Q Consensus 384 gLpyrvv 390 (396)
|+.|.+.
T Consensus 153 g~~~~i~ 159 (423)
T PRK12420 153 NLEVTIQ 159 (423)
T ss_pred CCCEEEE
Confidence 9987654
No 43
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.52 E-value=1.8e-13 Score=135.71 Aligned_cols=141 Identities=20% Similarity=0.276 Sum_probs=115.7
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe---CCceEEecCCCHHHHHHHh
Q 016049 235 YLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE---GADQCLIGTAEIPVGGIHM 311 (396)
Q Consensus 235 ~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~---~~~l~L~pTaEvpl~~l~~ 311 (396)
+++.+. .+.+.+++.+.+.+.++||++|.||.|.+.+++...+. . . .+++|++. |+.++|+|..++|++.+++
T Consensus 3 ~~p~~~-~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~-~-~-~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~ 78 (314)
T TIGR00443 3 LLPEEA-ARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG-I-L-NEDLFKLFDSLGRVLGLRPDMTTPIARAVS 78 (314)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC-c-c-hhceEEEECCCCCEEeecCcCcHHHHHHHH
Confidence 455554 55689999999999999999999999999999987654 2 2 34799985 3579999999999999887
Q ss_pred ccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc-EEE
Q 016049 312 DSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH-FKL 389 (396)
Q Consensus 312 ~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp-yrv 389 (396)
... ....+|+|++++|+|||+|..+.| |.+||+|+...+|+.+....+ .|++.++.++++.||+. +.+
T Consensus 79 ~~~-~~~~~p~r~~y~g~VfR~~~~~~g-------r~re~~Q~g~Eiig~~~~~ad--aEvi~l~~~~l~~lg~~~~~i 147 (314)
T TIGR00443 79 TRL-RDRPLPLRLCYAGNVFRTNESGAG-------RSREFTQAGVELIGAGGPAAD--AEVIALLIEALKALGLKDFKI 147 (314)
T ss_pred Hhc-ccCCCCeEEEEeceEeecCCCcCC-------CcccccccceEEeCCCCchhH--HHHHHHHHHHHHHcCCCCeEE
Confidence 653 355789999999999999987655 799999988888887654333 59999999999999994 544
No 44
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.50 E-value=2.4e-13 Score=138.79 Aligned_cols=147 Identities=17% Similarity=0.205 Sum_probs=118.9
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC----CceEEecCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG----ADQCLIGTA 302 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~----~~l~L~pTa 302 (396)
..|++. +++.+... .+.+.+-+.+.+.++||.+|.||.|+..+++.+ .|... +.+||++.+ +.++|+|..
T Consensus 6 p~G~~D-~lp~~~~~-~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~---~~~~~~f~d~~~g~~l~LRpD~ 80 (391)
T PRK12292 6 PEGIRD-LLPEEARK-IEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAIL---DLRTFKLVDQLSGRTLGLRPDM 80 (391)
T ss_pred CCcchh-cCHHHHHH-HHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccc---hhhhEEEeecCCCCEEEECCCC
Confidence 579985 67777654 589999999999999999999999999999975 44332 247999853 469999999
Q ss_pred CHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 303 EIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 303 Evpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
++|++++++... .....|+|++++|+|||+|.++.| |.+||+|+...+|+.+... .-.|++.++.++++.
T Consensus 81 T~~iaR~~a~~~-~~~~~p~r~~y~g~vfR~~~~~~g-------r~ref~Q~g~EiiG~~~~~--aDaEvi~l~~~~l~~ 150 (391)
T PRK12292 81 TAQIARIAATRL-ANRPGPLRLCYAGNVFRAQERGLG-------RSREFLQSGVELIGDAGLE--ADAEVILLLLEALKA 150 (391)
T ss_pred cHHHHHHHHHhc-cCCCCCeEEEeeceeeecCCCcCC-------CccchhccceEEeCCCCch--HHHHHHHHHHHHHHH
Confidence 999999987552 345689999999999999988777 7999999777777654322 235899999999999
Q ss_pred cCCc-EEE
Q 016049 383 LGLH-FKL 389 (396)
Q Consensus 383 LgLp-yrv 389 (396)
||++ |.+
T Consensus 151 lgl~~~~i 158 (391)
T PRK12292 151 LGLPNFTL 158 (391)
T ss_pred cCCCCeEE
Confidence 9996 654
No 45
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.48 E-value=6e-13 Score=135.99 Aligned_cols=147 Identities=15% Similarity=0.067 Sum_probs=116.8
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC----CceEEecCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG----ADQCLIGTA 302 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~----~~l~L~pTa 302 (396)
..|++ .+++.+... .+.+.+.+.+.+.++||.+|.||.|...+++.+ .|... +.++|++.+ +.++|+|..
T Consensus 10 p~G~r-D~lp~e~~~-~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~---~~~~y~f~D~~~g~~l~LRpD~ 84 (392)
T PRK12421 10 PDGVA-DVLPEEAQK-IERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDL---KLQTFKLIDQLSGRLMGVRADI 84 (392)
T ss_pred CCccc-ccCHHHHHH-HHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccc---hhceEEEEcCCCCcEEEECCcC
Confidence 57998 478887655 589999999999999999999999999999975 46443 236999864 358999999
Q ss_pred CHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 303 EIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 303 Evpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
++|++++++... ....|+|+|++|+|||.+..+.| |.+||+|+...++..+.- ..-.|++.++.++++.
T Consensus 85 T~~iaR~~a~~~--~~~~p~R~~Y~g~VfR~~~~~~g-------r~rEf~Q~GvEiiG~~~~--~aDaEvi~l~~e~l~~ 153 (392)
T PRK12421 85 TPQVARIDAHLL--NREGVARLCYAGSVLHTLPQGLF-------GSRTPLQLGAELYGHAGI--EADLEIIRLMLGLLRN 153 (392)
T ss_pred CHHHHHHHHhhc--CCCCceEEEEeeeEEEcCCCcCC-------CcCccceeceEEeCCCCc--hhHHHHHHHHHHHHHH
Confidence 999999876542 23679999999999999887666 799999965555554322 2235899999999999
Q ss_pred cCCc-EEEE
Q 016049 383 LGLH-FKLL 390 (396)
Q Consensus 383 LgLp-yrvv 390 (396)
||++ |.+.
T Consensus 154 lgi~~~~l~ 162 (392)
T PRK12421 154 AGVPALHLD 162 (392)
T ss_pred cCCCCeEEE
Confidence 9996 6553
No 46
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.46 E-value=9.7e-13 Score=120.61 Aligned_cols=134 Identities=31% Similarity=0.457 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEE---EeCCceEEecCCCHHHHHHHhccccCCCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYS---IEGADQCLIGTAEIPVGGIHMDSILSESLLP 321 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~---i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LP 321 (396)
..+++.+.+.+...||++|.+|.|++.+.+...|..+. .++. +.++..+|+++.+.++..+++... .++|
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~~ 75 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPK----DLLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKLP 75 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHh----heeeeecCCCCEEEECCCCcHHHHHHHHhhc---ccCC
Confidence 56788888899999999999999999999988776532 2332 234678999999999999888765 6899
Q ss_pred ceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCC--cEEEE
Q 016049 322 LKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGL--HFKLL 390 (396)
Q Consensus 322 lK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgL--pyrvv 390 (396)
+|++++|+|||.|.... ++.|++||.|++++.++.+.+....+.+++.+++++++.||+ +++++
T Consensus 76 ~~lfeig~vfr~e~~~~-----~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~ 141 (211)
T cd00768 76 LRLAEIGPAFRNEGGRR-----GLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFV 141 (211)
T ss_pred EEEEEEcceeecCCCcc-----ccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEE
Confidence 99999999999987532 256889999999999988754445689999999999999997 46654
No 47
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.46 E-value=7.3e-13 Score=129.75 Aligned_cols=137 Identities=17% Similarity=0.228 Sum_probs=109.5
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---CceEEecCCCH
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQCLIGTAEI 304 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l~L~pTaEv 304 (396)
..|++. +++.... +.+.+.+.+.+.+.++||++|.||.++..+++.. ....+||++.+ +.++|+|..++
T Consensus 8 p~G~rD-~lp~e~~-~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~------~~~~~~y~~~D~~g~~l~LRpD~T~ 79 (281)
T PRK12293 8 PQGSKL-YFGKSAK-LKREIENVASEILYENGFEEIVTPFFSYHQHQSI------ADEKELIRFSDEKNHQISLRADSTL 79 (281)
T ss_pred CCcccc-cCcHHHH-HHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc------cchhceEEEECCCCCEEEECCcCCH
Confidence 679995 6777765 4689999999999999999999999999988832 12247999864 56999999999
Q ss_pred HHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcC
Q 016049 305 PVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLG 384 (396)
Q Consensus 305 pl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~Lg 384 (396)
|++++++... ....+|+|++++|+|||+|. +||+|+.+-.+..+. . .|++.++.++++.||
T Consensus 80 ~iaR~~a~~~-~~~~~p~r~~Y~g~vfR~~~-------------rEf~Q~GvEliG~~~--~---~Evi~la~~~l~~lg 140 (281)
T PRK12293 80 DVVRIVTKRL-GRSTEHKKWFYIQPVFRYPS-------------NEIYQIGAELIGEED--L---SEILNIAAEIFEELE 140 (281)
T ss_pred HHHHHHHHhc-ccCCCceeEEEeccEEecCC-------------CcccccCeEeeCCCC--H---HHHHHHHHHHHHHcC
Confidence 9999987652 33478999999999999873 699996555555443 2 389999999999999
Q ss_pred CcEEEEec
Q 016049 385 LHFKLLLF 392 (396)
Q Consensus 385 Lpyrvv~~ 392 (396)
+++. +.+
T Consensus 141 l~~~-i~i 147 (281)
T PRK12293 141 LEPI-LQI 147 (281)
T ss_pred CCCE-EEE
Confidence 9974 544
No 48
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.45 E-value=9.8e-13 Score=136.05 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=132.5
Q ss_pred HHHHhhhcCccccccccccCC-cceeecchHHHHHHHHHHHHHHHHHH--HCCCEeeecCCccchHHHHhhccCCCCCCc
Q 016049 210 HFQLGKALDIFDFDAAAEVSG-SKFYYLKNEAVMLEMGLINWTLSEVI--KRGFTPLTTPEIVRSSVVEKCGFQPRGANT 286 (396)
Q Consensus 210 H~eLg~~l~l~df~~~akvsG-~rf~~l~g~~a~Le~aLi~~~~d~~~--~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~ 286 (396)
-++|+++.|++- ++.-...| .++|=+..-|+.|.+.|++.|++.+. ..+..+|.+|.|++..+|+.|||...|.+.
T Consensus 9 i~~l~krrgf~~-~s~eiYgg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~Dp 87 (539)
T PRK14894 9 IVALAKRRGFIF-PSSEIYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDP 87 (539)
T ss_pred HHHHHHhCCCCc-cCccccCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCc
Confidence 356778877763 33222333 45677778888999999999999773 567889999999999999999999887531
Q ss_pred --------ccEEEe--------------------------------C--CceEEecCCCHH-HHHHHhccccCCCCCCce
Q 016049 287 --------QVYSIE--------------------------------G--ADQCLIGTAEIP-VGGIHMDSILSESLLPLK 323 (396)
Q Consensus 287 --------q~y~i~--------------------------------~--~~l~L~pTaEvp-l~~l~~~~~l~~~~LPlK 323 (396)
..|+.+ + ...||+|.--.. +.++-.---..-..||.-
T Consensus 88 mV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFg 167 (539)
T PRK14894 88 LVDCRDCKMRWRADHIQGVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFG 167 (539)
T ss_pred eeECCCCCccccCccceeeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCee
Confidence 122110 0 137888864444 444433222355789999
Q ss_pred EEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 324 YAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 324 ~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
.+++|.+||+|..++ .||+|+|||+|.|+..||.|+++.++|...++....++.++|++
T Consensus 168 iaQIGk~FRNEIsPr----~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~ 226 (539)
T PRK14894 168 IAQVGKAFRNEINPR----NFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIP 226 (539)
T ss_pred EEeeeccccCccCCC----CceeecccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999874 59999999999999999999998999999999999999999996
No 49
>PLN02972 Histidyl-tRNA synthetase
Probab=99.42 E-value=2.2e-12 Score=139.76 Aligned_cols=145 Identities=15% Similarity=0.206 Sum_probs=116.9
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
..|++. |++.+... .+.+++.+.+.+.++||.+|.||.|+..+++.+ .|.. . .+||.+.+ +.++|+|..+
T Consensus 330 PkGtrD-~lP~e~~~-re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged---~-k~mY~f~D~gGr~LaLRPDlT 403 (763)
T PLN02972 330 PKGTRD-FAKEQMAI-REKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED---S-KLIYDLADQGGELCSLRYDLT 403 (763)
T ss_pred CCCCcc-CCHHHHHH-HHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc---h-hheEEEECCCCCEEEeCCCCh
Confidence 679994 78887654 689999999999999999999999999999975 3432 1 36999974 5689999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
+|++++++... ..|+|+|++|+|||+|.++.| |.|||+|+..-++...+. ...-.|++.++.++++.|
T Consensus 404 vPiAR~vA~n~----~~p~KrYyiG~VFR~e~pqkG-------R~REF~Q~G~EIIG~~~~-~~aDAEVI~La~E~L~~L 471 (763)
T PLN02972 404 VPFARYVAMNG----ITSFKRYQIAKVYRRDNPSKG-------RYREFYQCDFDIAGVYEP-MGPDFEIIKVLTELLDEL 471 (763)
T ss_pred HHHHHHHHhCC----CCcceEEEeccEEecCCCCCC-------CCccceEEeEEEEcCCCc-chhhHHHHHHHHHHHHhC
Confidence 99999987652 248999999999999998877 789999977777764321 112358999999999999
Q ss_pred CCc-EEEE
Q 016049 384 GLH-FKLL 390 (396)
Q Consensus 384 gLp-yrvv 390 (396)
|+. |.+.
T Consensus 472 Gi~df~I~ 479 (763)
T PLN02972 472 DIGTYEVK 479 (763)
T ss_pred CCCceEEE
Confidence 995 7654
No 50
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.41 E-value=2.2e-12 Score=131.69 Aligned_cols=134 Identities=17% Similarity=0.304 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCC-CCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCCCceE
Q 016049 246 GLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPR-GANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKY 324 (396)
Q Consensus 246 aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~-~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~ 324 (396)
.|.+.+++.+..+||++|.||.|++.+.++.+|+.+. ...+++|.++ +..+|+|+...+++.+++.. ....++|+|+
T Consensus 208 ~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~id-eel~LRpsLtPsLlr~la~n-~k~~~~P~RI 285 (417)
T PRK09537 208 KLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD-KNFCLRPMLAPGLYNYLRKL-DRILPDPIKI 285 (417)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeC-CceEehhhhHHHHHHHHHhh-hhcccCCeeE
Confidence 3445555555668999999999999999998887532 1123688875 47899999999998877532 2335689999
Q ss_pred EEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 016049 325 AAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLF 392 (396)
Q Consensus 325 ~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~ 392 (396)
+++|+|||+|..+.+ +++||+|++...+. +...+.++..+++++|+.||++|++...
T Consensus 286 FEIG~VFR~E~~g~~-------hlrEf~Ql~~~iiG----s~~~f~dL~~lleeLL~~LGI~f~i~s~ 342 (417)
T PRK09537 286 FEIGPCYRKESDGKE-------HLEEFTMVNFCQMG----SGCTRENLENIIDDFLKHLGIDYEIIGD 342 (417)
T ss_pred EEEeceEecCCCCCC-------CcceEEEEEEEEeC----CchHHHHHHHHHHHHHHHCCCCcEEecC
Confidence 999999999975433 68999998887763 3345678999999999999999988744
No 51
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.6e-13 Score=135.21 Aligned_cols=164 Identities=23% Similarity=0.240 Sum_probs=140.7
Q ss_pred HHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhc-cCCCCCCccc
Q 016049 210 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCG-FQPRGANTQV 288 (396)
Q Consensus 210 H~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG-~~p~~~~~q~ 288 (396)
..++..+-+++|+-. |+| +|.|+..+-.++.++..|+.....+.|.+....|.||...++++.. |...|. .++
T Consensus 72 Y~qVitk~emieYyd---vsG--cyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~Fa-PEv 145 (551)
T KOG4163|consen 72 YSQVITKGEMIEYYD---VSG--CYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFA-PEV 145 (551)
T ss_pred HHHHhhhhhhheeec---ccc--eEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCC-cce
Confidence 456777788999876 777 4788888888889999999999999999999999999999999753 333332 356
Q ss_pred EEEe---C----CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eC
Q 016049 289 YSIE---G----ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FC 360 (396)
Q Consensus 289 y~i~---~----~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~ 360 (396)
-++. + +.++++||||.-+.-+|+.++.+++|||||+.++..+-|+|-. .+...+|.++|-+.|.|. |.
T Consensus 146 AwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk----~p~PFlRtrEFLWQEGHTAfa 221 (551)
T KOG4163|consen 146 AWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFK----HPQPFLRTREFLWQEGHTAFA 221 (551)
T ss_pred EEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhhheeeecc----CCCcchhhhHHHHhcCcchhC
Confidence 6654 1 4689999999999999999999999999999999999999986 477999999999999998 57
Q ss_pred CccchHHHHHHHHHHHHHHHHHc
Q 016049 361 QPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 361 ~pe~S~~~~ee~l~~~e~il~~L 383 (396)
++++++++..++|+++..+|..|
T Consensus 222 t~~eA~eEvlqiLdlYa~vy~el 244 (551)
T KOG4163|consen 222 TPEEAEEEVLQILDLYARVYEEL 244 (551)
T ss_pred CHhHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999998754
No 52
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.32 E-value=7.7e-12 Score=131.94 Aligned_cols=147 Identities=19% Similarity=0.203 Sum_probs=106.6
Q ss_pred HHHhhhcCccccccccccCC-cceeecchHHHHHHHHHHHHHHHHHH-HCCCEeeecCCccchHHHHhhccCCCCCCccc
Q 016049 211 FQLGKALDIFDFDAAAEVSG-SKFYYLKNEAVMLEMGLINWTLSEVI-KRGFTPLTTPEIVRSSVVEKCGFQPRGANTQV 288 (396)
Q Consensus 211 ~eLg~~l~l~df~~~akvsG-~rf~~l~g~~a~Le~aLi~~~~d~~~-~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~ 288 (396)
.+|+++.|++.. +.-...| +++|-+.+-|+.|.+.+++.|++.+. ..|+.+|.+|.|.+..+|.+|||+..|.+ -|
T Consensus 7 ~~l~~rrgf~~~-s~eIYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D-~m 84 (551)
T TIGR00389 7 MSLLKRRGFVFQ-SFEIYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTD-WM 84 (551)
T ss_pred HHHHHhcCCccc-cchhccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCC-ce
Confidence 467888887743 3111222 45666666677888999999999874 77999999999999999999999988864 22
Q ss_pred EEEe------------------------------------------C-----------------------CceEEecCCC
Q 016049 289 YSIE------------------------------------------G-----------------------ADQCLIGTAE 303 (396)
Q Consensus 289 y~i~------------------------------------------~-----------------------~~l~L~pTaE 303 (396)
.+.. | ...||+|.--
T Consensus 85 v~~~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETA 164 (551)
T TIGR00389 85 VDCKSCKERFRADHLIEEKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETA 164 (551)
T ss_pred eecCCCCCEecchHHHHHHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccc
Confidence 2110 0 1245665433
Q ss_pred HH-HHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc
Q 016049 304 IP-VGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE 363 (396)
Q Consensus 304 vp-l~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe 363 (396)
.. +.++-+-.-..-..||.-.+++|.+||+|.+++ .||+|+|||+|.|+..||.|+
T Consensus 165 QGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr----~~l~R~REF~q~EiE~F~~p~ 221 (551)
T TIGR00389 165 QGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEISPR----NGLFRVREFEQAEIEFFVHPL 221 (551)
T ss_pred hhhHHhHHHHHHhcCCCCCeeehhhhHhhhcccCcc----cceEEeehhhhchhheecCcc
Confidence 32 333322112245689999999999999999874 599999999999999999995
No 53
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6.1e-12 Score=129.84 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=112.4
Q ss_pred HHHHhhhcCccccccccccCC-cceeecchHHHHHHHHHHHHHHHHHH-H-CCCEeeecCCccchHHHHhhccCCCCCCc
Q 016049 210 HFQLGKALDIFDFDAAAEVSG-SKFYYLKNEAVMLEMGLINWTLSEVI-K-RGFTPLTTPEIVRSSVVEKCGFQPRGANT 286 (396)
Q Consensus 210 H~eLg~~l~l~df~~~akvsG-~rf~~l~g~~a~Le~aLi~~~~d~~~-~-~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~ 286 (396)
-++|+++-|++ |++.-...| ++||=+.+.|+.|.+.|++.|++.+. . -|+.+|.+|.|.+.++|.+|||..+|.+.
T Consensus 9 i~~l~KrRGF~-~~s~EIYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDp 87 (558)
T COG0423 9 IVELAKRRGFV-FPSSEIYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDP 87 (558)
T ss_pred HHHHHHhcccc-cccceeecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhcCcccccccc
Confidence 35788888876 444433444 56777888888999999999999874 3 68999999999999999999999887642
Q ss_pred c--------cEEE--------------------------------------------------------eCCceEEecC-
Q 016049 287 Q--------VYSI--------------------------------------------------------EGADQCLIGT- 301 (396)
Q Consensus 287 q--------~y~i--------------------------------------------------------~~~~l~L~pT- 301 (396)
- .|+. ++...||+|.
T Consensus 88 lv~c~~c~~~yRADHLiEe~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPET 167 (558)
T COG0423 88 LVECKKCGERYRADHLIEEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPET 167 (558)
T ss_pred eeeccccchhhhhhHHHHHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccc
Confidence 1 1220 0124688875
Q ss_pred CCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccc
Q 016049 302 AEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEE 364 (396)
Q Consensus 302 aEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~ 364 (396)
|.=.+.++-.=.-..-..||+-.+++|+.||+|.+++ .||+|+|||+|.|+-.||.|++
T Consensus 168 AQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr----~gl~R~REF~QaEiE~Fv~P~~ 226 (558)
T COG0423 168 AQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEISPR----NGLFRTREFEQAEIEFFVDPEE 226 (558)
T ss_pred cchhhhhhHHHHHHhccCCCeEEEeechhhccccCcc----cceeehhhhhhhheeeEECCCc
Confidence 3333444322112245679999999999999999974 5999999999999999999976
No 54
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.31 E-value=4.9e-11 Score=117.51 Aligned_cols=145 Identities=17% Similarity=0.238 Sum_probs=108.0
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---CceEEecCCCHHH
Q 016049 230 GSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQCLIGTAEIPV 306 (396)
Q Consensus 230 G~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l~L~pTaEvpl 306 (396)
|++. +++.+... .+.+++-+.+.+.++||++|.||.+...+++...+... . +++|++.+ +.++|+|..++|+
T Consensus 1 G~~d-~~~~~~~~-~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~-~~~~~~~D~~G~~l~LR~D~T~~i 75 (311)
T PF13393_consen 1 GFRD-LLPEEARK-RERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED--S-DNMYRFLDRSGRVLALRPDLTVPI 75 (311)
T ss_dssp T----B-HHHHHH-HHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--G-GCSEEEECTTSSEEEE-SSSHHHH
T ss_pred CCCc-CCHHHHHH-HHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc--h-hhhEEEEecCCcEeccCCCCcHHH
Confidence 6664 67777665 47899999999999999999999999999998644221 1 26898864 5699999999999
Q ss_pred HHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHH-HcCC
Q 016049 307 GGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYS-SLGL 385 (396)
Q Consensus 307 ~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~-~LgL 385 (396)
+++++... . ...|.|++++|++||++..+.| +.+||.|+..-++..+. ...-.|++.++.++++ .||+
T Consensus 76 aR~~a~~~-~-~~~~~r~~y~g~vfR~~~~~~g-------~~re~~Q~g~Eiig~~~--~~~daEvi~l~~e~l~~~l~~ 144 (311)
T PF13393_consen 76 ARYVARNL-N-LPRPKRYYYIGPVFRYERPGKG-------RPREFYQCGFEIIGSSS--LEADAEVIKLADEILDRELGL 144 (311)
T ss_dssp HHHHHHCC-G-SSSSEEEEEEEEEEEEETTTTT-------BESEEEEEEEEEESSSS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-C-cCCCceEEEEcceeeccccCCC-------CCceeEEEEEEEECCCC--HHHHHHHHHHHHHHHHhhcCC
Confidence 99988752 2 6789999999999999977655 78999998777776553 2234689999999997 9999
Q ss_pred c-EEEE
Q 016049 386 H-FKLL 390 (396)
Q Consensus 386 p-yrvv 390 (396)
. +.+.
T Consensus 145 ~~~~i~ 150 (311)
T PF13393_consen 145 ENFTIR 150 (311)
T ss_dssp TSEEEE
T ss_pred CCcEEE
Confidence 4 5543
No 55
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.29 E-value=3.5e-11 Score=122.28 Aligned_cols=127 Identities=17% Similarity=0.295 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---CceEEecCCCHHHHHHHhccccCCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG---ADQCLIGTAEIPVGGIHMDSILSESLL 320 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~L 320 (396)
+++.+-+.+.+.++||.+|.||.|...+++.. .|... ..+||++.+ +.++|+|..++|+++++... ....
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~---~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~---~~~~ 81 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDI---RRRIFVTSDENGEELCLRPDFTIPVCRRHIAT---AGGE 81 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchh---hcceEEEECCCCCEEeeCCCCcHHHHHHHHHc---CCCC
Confidence 57888888999999999999999999998864 55432 247999864 57999999999999987654 2367
Q ss_pred CceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc--chHHHHHHHHHHHHHHHHHcCCc-EEEE
Q 016049 321 PLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE--ESDSYHEELIRIEEDLYSSLGLH-FKLL 390 (396)
Q Consensus 321 PlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe--~S~~~~ee~l~~~e~il~~LgLp-yrvv 390 (396)
|+|++++|+|||+| .| |.+||+|+..-++..++ .++ .|++.++.++++.||+. |++.
T Consensus 82 p~R~~Y~g~VfR~~---~g-------r~rEf~Q~GvEiiG~~~~~~aD---aEvi~l~~~~L~~lgl~~~~i~ 141 (373)
T PRK12295 82 PARYAYLGEVFRQR---RD-------RASEFLQAGIESFGRADPAAAD---AEVLALALEALAALGPGDLEVR 141 (373)
T ss_pred CeEEEEEccEEECC---CC-------CCCcceEeeEEeeCCCCCccch---HHHHHHHHHHHHHcCCCceEEE
Confidence 99999999999999 23 68999997777776432 233 58999999999999985 6553
No 56
>PLN02734 glycyl-tRNA synthetase
Probab=99.28 E-value=4.9e-11 Score=128.00 Aligned_cols=173 Identities=13% Similarity=0.188 Sum_probs=125.0
Q ss_pred CHHHHhhhcCccccccccccCC-cceeecchHHHHHHHHHHHHHHHHHH-HCCCEeeecCCccchHHHHhhccCCCCCCc
Q 016049 209 DHFQLGKALDIFDFDAAAEVSG-SKFYYLKNEAVMLEMGLINWTLSEVI-KRGFTPLTTPEIVRSSVVEKCGFQPRGANT 286 (396)
Q Consensus 209 dH~eLg~~l~l~df~~~akvsG-~rf~~l~g~~a~Le~aLi~~~~d~~~-~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~ 286 (396)
.-.+|+++.|++. ++--...| ++||=|.+-|+.|.+.++++|++.+. ..++-+|.+|.|.+..+|++|||..+|.+-
T Consensus 77 ~l~~l~krRgF~~-pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~ 155 (684)
T PLN02734 77 AVVNTLERRLFYI-PSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDL 155 (684)
T ss_pred HHHHHHHhcCCcc-ccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccce
Confidence 3457788877663 33222333 45677777778899999999999874 567889999999999999999999888641
Q ss_pred --------ccEEEe------------------------------------------------------C-----------
Q 016049 287 --------QVYSIE------------------------------------------------------G----------- 293 (396)
Q Consensus 287 --------q~y~i~------------------------------------------------------~----------- 293 (396)
..|+.+ |
T Consensus 156 mv~~~~~~~~~RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNL 235 (684)
T PLN02734 156 MVKDEKTGTCFRADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNL 235 (684)
T ss_pred eeEcCCCCcEecchHHHHHHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeeccc
Confidence 112110 0
Q ss_pred -----------CceEEecCCCHH-HHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC
Q 016049 294 -----------ADQCLIGTAEIP-VGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ 361 (396)
Q Consensus 294 -----------~~l~L~pTaEvp-l~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~ 361 (396)
...||+|.--.. +.++-+-.-..-..||+-.+++|..||+|.+++ .||+|+|||+|.|+..||.
T Consensus 236 MF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR----~gl~R~REF~qaEiE~Fv~ 311 (684)
T PLN02734 236 MFQTSIGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPR----QGLLRVREFTLAEIEHFVD 311 (684)
T ss_pred ceeecccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcc----cceeeechhhhhhhheecC
Confidence 124556532222 233211111245689999999999999999875 4999999999999999999
Q ss_pred ccch------------------------------------------HHHHHHHHHHHHHHHHHcCCc
Q 016049 362 PEES------------------------------------------DSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 362 pe~S------------------------------------------~~~~ee~l~~~e~il~~LgLp 386 (396)
|++- .+++.-.+.....+|..+||+
T Consensus 312 P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~ 378 (684)
T PLN02734 312 PEDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGID 378 (684)
T ss_pred cccccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCC
Confidence 9732 346778888899999999995
No 57
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.28 E-value=5.6e-11 Score=121.66 Aligned_cols=135 Identities=17% Similarity=0.276 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCC-CCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCCCce
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPR-GANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLK 323 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~-~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK 323 (396)
..|.+.+++.+..+||++|.||.|.+.+.++..|.... ...+++|++++ ..+|+|+...+|+.+..... ....+|+|
T Consensus 243 ~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~ee-~lvLRPdLTPsLaR~La~N~-~~l~~PqK 320 (453)
T TIGR02367 243 GKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDK-NFCLRPMLAPNLYNYLRKLD-RALPDPIK 320 (453)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEecC-ceEecccCHHHHHHHHHHhh-hhccCCee
Confidence 57788888899999999999999998888887765322 11237898754 68999999989988765421 12468999
Q ss_pred EEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 016049 324 YAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLF 392 (396)
Q Consensus 324 ~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~ 392 (396)
+|++|.|||+|.+..| |++||+|++..++.... . +.++...+.++|+.||+.|++..-
T Consensus 321 IFEIGkVFR~E~~~~t-------hlREF~QL~~eIaG~~a-t---faDlealL~e~Lr~LGIdfeitE~ 378 (453)
T TIGR02367 321 IFEIGPCYRKESDGKE-------HLEEFTMLNFCQMGSGC-T---RENLEAIIKDFLDHLEIDFEIVGD 378 (453)
T ss_pred EEEEcCeEecCCCCCC-------CcCeEEEEEEEEECCCC-C---HHHHHHHHHHHHHHCCCceEEeCC
Confidence 9999999999987665 69999999999886542 2 345667999999999999988643
No 58
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.11 E-value=2.5e-10 Score=115.79 Aligned_cols=144 Identities=23% Similarity=0.299 Sum_probs=116.1
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh-ccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC-GFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s-G~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
..|+|+ +++.+..+. ..+.+-+.+.+.++||..|.||+|...+.+.-. |..- ..++|++.+ +.+||+|.++
T Consensus 6 p~g~rd-~Lp~e~~~~-~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l---~~~~f~l~d~~g~~l~LRpD~T 80 (390)
T COG3705 6 PEGIRD-VLPLEARRK-EEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDL---RRRLFKLEDETGGRLGLRPDFT 80 (390)
T ss_pred CCcchh-cchhHHhhH-HHHHHHHHHHHHHhCCccccccccchhhhhhhccchhh---hhhheEEecCCCCeEEeccccc
Confidence 478895 788888776 688888999999999999999999999999865 5432 236999875 4699999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEE--eeEEEeCCccchHHHHHHHHHHHHHHHH
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSK--LEMFVFCQPEESDSYHEELIRIEEDLYS 381 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~k--vE~f~f~~pe~S~~~~ee~l~~~e~il~ 381 (396)
+|++.++....-. .|.|+++.|++||...+-.| |..||.| +|++...+ -.++ .|++..+..+++
T Consensus 81 ~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~~~~~g-------~~~Ef~QaGiEllG~~~-~~AD---aEvi~la~~~L~ 146 (390)
T COG3705 81 IPVARIHATLLAG---TPLRLSYAGKVFRAREGRHG-------RRAEFLQAGIELLGDDS-AAAD---AEVIALALAALK 146 (390)
T ss_pred HHHHHHHHHhcCC---CCceeeecchhhhcchhccC-------cccchhhhhhHHhCCCc-chhh---HHHHHHHHHHHH
Confidence 9999999866332 89999999999999855545 5679999 67776622 2344 589999999999
Q ss_pred HcCCc-EEEE
Q 016049 382 SLGLH-FKLL 390 (396)
Q Consensus 382 ~LgLp-yrvv 390 (396)
.+|++ +++.
T Consensus 147 ~~gl~~~~l~ 156 (390)
T COG3705 147 ALGLADLKLE 156 (390)
T ss_pred HcCCcCeEEE
Confidence 99986 6554
No 59
>PRK07080 hypothetical protein; Validated
Probab=99.05 E-value=3.4e-09 Score=104.28 Aligned_cols=138 Identities=19% Similarity=0.218 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHCC----CEeeecCCccchHHHHhhccCCCCCCcccEEEe---------------------------C
Q 016049 245 MGLINWTLSEVIKRG----FTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE---------------------------G 293 (396)
Q Consensus 245 ~aLi~~~~d~~~~~G----y~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~---------------------------~ 293 (396)
..+++.+...+.+.| ++++..|.+++.+.|+++|++-.|.+ .+|.+. .
T Consensus 47 e~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~-l~~~V~~~~g~~~e~~~ll~~~~~~~~~~~~l~~ 125 (317)
T PRK07080 47 EDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQ-LAGTVHSFCGNEAEHRRLLACLDRGEDWTESQKP 125 (317)
T ss_pred HHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcc-cceeecCCCCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 455555555555555 99999999999999999998876664 455442 1
Q ss_pred CceEEecCCCHHHHHHHhcc-ccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHH
Q 016049 294 ADQCLIGTAEIPVGGIHMDS-ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372 (396)
Q Consensus 294 ~~l~L~pTaEvpl~~l~~~~-~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~ 372 (396)
.+++|.|.++.|+.-+..++ .+.... ..+--.|.|||+|.+ .++-|+.+|.|.|.+.+.+|++..+..+..
T Consensus 126 ~~~vL~pAaCyP~Yp~l~~~g~lp~~g--~~~dv~g~CFR~E~s------~dl~Rl~~F~mrE~V~iGt~e~v~~~r~~w 197 (317)
T PRK07080 126 TDVVLTPAACYPVYPVLARRGALPADG--RLVDVASYCFRHEPS------LDPARMQLFRMREYVRIGTPEQIVAFRQSW 197 (317)
T ss_pred CcceecccccccchhhhccCcccCCCC--cEEEeeeeeeccCCC------CCcHHHhheeeeEEEEecCHHHHHHHHHHH
Confidence 25789999999998887765 443222 566666999999984 368899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 016049 373 IRIEEDLYSSLGLHFKLLL 391 (396)
Q Consensus 373 l~~~e~il~~LgLpyrvv~ 391 (396)
++.+..+.+.|||++++..
T Consensus 198 ~e~~~~l~~~LgL~~~ve~ 216 (317)
T PRK07080 198 IERGTAMADALGLPVEIDL 216 (317)
T ss_pred HHHHHHHHHHhCCceeEee
Confidence 9999999999999998754
No 60
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.5e-08 Score=100.89 Aligned_cols=144 Identities=17% Similarity=0.272 Sum_probs=112.5
Q ss_pred CCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---CceEEecCCCH
Q 016049 229 SGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG---ADQCLIGTAEI 304 (396)
Q Consensus 229 sG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~---~~l~L~pTaEv 304 (396)
.|||. |-|...+ |+..+.+.+.+.+.++|++.|.||.|.-.+++.+ -|-.. ..+|.+++ +-+.|++.-++
T Consensus 64 KGTrD-~~p~qm~-lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds----kLiYdlkDQGGEl~SLRYDLTV 137 (518)
T KOG1936|consen 64 KGTRD-FSPEQMA-LREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS----KLIYDLKDQGGELCSLRYDLTV 137 (518)
T ss_pred CCCCc-CCHHHHH-HHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc----ceeEehhhcCCcEEEeeccccc
Confidence 68884 6777765 5788999999999999999999999999999975 56332 37999875 45789999999
Q ss_pred HHHHHHh-ccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 305 PVGGIHM-DSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 305 pl~~l~~-~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
|++++.+ |.+ --+|.+.++.+||++.++ -|+| |.|||.|.++-+...-++... -.|++.+..++|..|
T Consensus 138 PfARylAmNki-----~sikRy~iAkVyRRd~P~---mtrG--R~REFYQcDFDIAG~~d~M~p-daE~lkiv~e~L~~l 206 (518)
T KOG1936|consen 138 PFARYLAMNKI-----TSIKRYHIAKVYRRDQPA---MTRG--RYREFYQCDFDIAGQFDPMIP-DAECLKIVVEILSRL 206 (518)
T ss_pred HHHHHHHHccc-----ccceeeeEEEEEeccCch---hhch--hhhhhhccCccccccCCCCCc-hHHHHHHHHHHHhhc
Confidence 9999765 433 347889999999998884 4555 899999999888764332111 147999999999999
Q ss_pred CCc-EEE
Q 016049 384 GLH-FKL 389 (396)
Q Consensus 384 gLp-yrv 389 (396)
||- |.+
T Consensus 207 ~Igd~~i 213 (518)
T KOG1936|consen 207 GIGDYGI 213 (518)
T ss_pred CccceEE
Confidence 995 654
No 61
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.69 E-value=1.3e-07 Score=92.41 Aligned_cols=118 Identities=8% Similarity=-0.126 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEE---eCCceEEecCCCHHHHHHHhccccCCCCC
Q 016049 244 EMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI---EGADQCLIGTAEIPVGGIHMDSILSESLL 320 (396)
Q Consensus 244 e~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i---~~~~l~L~pTaEvpl~~l~~~~~l~~~~L 320 (396)
.+.+.+-+.+.+.++||++|.||.|+..+++...|.... +...+.+ +|+.+.|+|.++.|++++.+... .-
T Consensus 10 ~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~--~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~----~~ 83 (272)
T PRK12294 10 LKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQ--QMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP----TA 83 (272)
T ss_pred HHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchh--hhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC----CC
Confidence 367888888999999999999999999999854442221 1122333 45789999999999999887541 24
Q ss_pred CceEEEeccccccCcCCCCCCCCCcceeeeEEE--eeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 321 PLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSK--LEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 321 PlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~k--vE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
|.|+++.|++||++. +|+| ||+++ ...+++ .+++.++.+.+..+|..
T Consensus 84 ~~Rl~Y~g~VfR~~~--------------~~~Q~GvEliG--~~~~a~---~e~l~la~~~l~~~g~~ 132 (272)
T PRK12294 84 ATKVAYAGLIIRNNE--------------AAVQVGIENYA--PSLANV---QQSFKLFIQFIQQQLRD 132 (272)
T ss_pred CceEEEeccEeccCC--------------CcceeceEEEC--CCchhH---HHHHHHHHHHHHHhCCC
Confidence 679999999999873 2677 56664 222232 56778989999999654
No 62
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.64 E-value=2.1e-07 Score=97.91 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=100.8
Q ss_pred eecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccch-------------------HHHHhh-cc---CCCC-------
Q 016049 234 YYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRS-------------------SVVEKC-GF---QPRG------- 283 (396)
Q Consensus 234 ~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~-------------------~~~~~s-G~---~p~~------- 283 (396)
.+++|....+ +.+++.+.+.+...||++|.+|.+... +++... |. .|..
T Consensus 226 ~~~~~~~~~~-~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~ 304 (489)
T PRK04172 226 KIYPGKKHPY-REFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKE 304 (489)
T ss_pred CCCCCCCChH-HHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHH
Confidence 3677776554 789999999999999999999999843 333211 10 1100
Q ss_pred ---------CCcccEEEeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeE
Q 016049 284 ---------ANTQVYSIEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQF 351 (396)
Q Consensus 284 ---------~~~q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF 351 (396)
...-+|.+.+ ..++|++..+.+++++.... ...|+|+|++|+|||+|....| |++||
T Consensus 305 ~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~----~~~p~rlFeiGrVFR~e~~d~~-------~l~Ef 373 (489)
T PRK04172 305 VHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASR----PEPPQKYFSIGRVFRPDTIDAT-------HLPEF 373 (489)
T ss_pred HHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhc----CCCCeEEEEecceEcCCCCCcc-------cCCch
Confidence 0001233322 35899999999999987753 3579999999999999986544 46899
Q ss_pred EEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc-EEE
Q 016049 352 SKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH-FKL 389 (396)
Q Consensus 352 ~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp-yrv 389 (396)
+|++..++..+- . +.++..++++++..||++ ++.
T Consensus 374 ~ql~~~i~G~~~-~---f~elkg~l~~ll~~lGi~~~~~ 408 (489)
T PRK04172 374 YQLEGIVMGEDV-S---FRDLLGILKEFYKRLGFEEVKF 408 (489)
T ss_pred heEEEEEEeCCC-C---HHHHHHHHHHHHHHhCCceEEE
Confidence 999999887642 1 578999999999999994 443
No 63
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.46 E-value=1.9e-06 Score=90.25 Aligned_cols=138 Identities=19% Similarity=0.239 Sum_probs=98.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCC-----CCCcccEEEeC----------------
Q 016049 236 LKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPR-----GANTQVYSIEG---------------- 293 (396)
Q Consensus 236 l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~-----~~~~q~y~i~~---------------- 293 (396)
..|..--| ..+++.+.+.+...||+++.+|..|-.+.|.- +=++|. .. .+.|.+++
T Consensus 224 ~~g~~HPl-~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~-~DTFyl~~~~~~~~~~~p~~~~~~ 301 (494)
T PTZ00326 224 GGGNLHPL-LKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDA-QDTFFLSKPETSKVNDLDDDYVER 301 (494)
T ss_pred CCCCCChH-HHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCc-CceEEEcCccccccccCcHHHHHH
Confidence 34443333 56777888889999999999887666666652 222332 22 24677753
Q ss_pred ------------------------CceEEecCCCHHHHHHHhccccC--C-CC-CCceEEEeccccccCcCCCCCCCCCc
Q 016049 294 ------------------------ADQCLIGTAEIPVGGIHMDSILS--E-SL-LPLKYAAFSHCFRTEAGAAGTATRGL 345 (396)
Q Consensus 294 ------------------------~~l~L~pTaEvpl~~l~~~~~l~--~-~~-LPlK~~~~~~cFR~Eag~~G~~t~GL 345 (396)
..+.|++-.+.+.+++.....-. . .. .|+|++++++|||+|...++
T Consensus 302 Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~Dat------ 375 (494)
T PTZ00326 302 VKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDAT------ 375 (494)
T ss_pred HHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCC------
Confidence 24788888888888876543211 1 22 49999999999999998776
Q ss_pred ceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 346 YRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 346 ~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
|.++|+|+|..++...- + +.+++..+.++|+.||+.
T Consensus 376 -H~~eFhQ~Eg~vi~~~~-s---~~~L~~~l~~f~~~lG~~ 411 (494)
T PTZ00326 376 -HLAEFHQVEGFVIDRNL-T---LGDLIGTIREFFRRIGIT 411 (494)
T ss_pred -cCceeEEEEEEEEeCCC-C---HHHHHHHHHHHHHhcCCC
Confidence 79999999999986543 3 357899999999999984
No 64
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.27 E-value=1.2e-05 Score=78.55 Aligned_cols=109 Identities=18% Similarity=0.250 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceEEecCCCHHHHHHHhccccCCC
Q 016049 243 LEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 243 Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
+..++++.+++.+.++||.+|.||.|.... +|- ..+.|.+. |.+.+|+-..+..+..+....
T Consensus 3 ~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~----~~~-----~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~----- 68 (269)
T cd00669 3 VRSKIIKAIRDFMDDRGFLEVETPMLQKIT----GGA-----GARPFLVKYNALGLDYYLRISPQLFKKRLMVGG----- 68 (269)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCEEeccC----Ccc-----ccceEEeeecCCCCcEEeecCHHHHHHHHHhcC-----
Confidence 456788889999999999999999998652 221 11356552 677899866565544433221
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHH
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIR 374 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~ 374 (396)
+ -|++++++|||+|....+ |+.||+|.|.... .+-++..+..++++.
T Consensus 69 -~-~~vf~i~~~fR~e~~~~~-------hl~EF~~le~e~~~~~~~dvm~~~e~lv~ 116 (269)
T cd00669 69 -L-DRVFEINRNFRNEDLRAR-------HQPEFTMMDLEMAFADYEDVIELTERLVR 116 (269)
T ss_pred -C-CcEEEEecceeCCCCCCC-------cccceeEEEEEEecCCHHHHHHHHHHHHH
Confidence 1 199999999999943322 8999999999854 333444444444443
No 65
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.17 E-value=3.8e-06 Score=83.43 Aligned_cols=101 Identities=17% Similarity=0.190 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceEEecCCCHHHHHHHhccccCC
Q 016049 242 MLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 242 ~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
+....+++.+++.+.++||.+|.||.|....+. +....| +... |... |...+|+-..+..+..+.+..
T Consensus 6 ~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~-~~~~~~--f~~~-y~~~~~~~~~~~~L~~SPe~~~kr~la~~---- 77 (306)
T PRK09350 6 LKRAKIIAEIRRFFADRGVLEVETPILSQATVT-DIHLVP--FETR-FVGPGASQGKTLWLMTSPEYHMKRLLAAG---- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCeEecccCC-CccCCc--eeee-eccccccCCcceEEecCHHHHHHHHhhcc----
Confidence 456788888999999999999999999765432 111111 1111 3321 466888844454444443322
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC 360 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~ 360 (396)
+ -|++++|+|||+|....+ +..||+|+|.+...
T Consensus 78 --~-~rvf~i~~~FR~e~~~~~-------H~~EFt~lE~y~~~ 110 (306)
T PRK09350 78 --S-GPIFQICKSFRNEEAGRY-------HNPEFTMLEWYRPH 110 (306)
T ss_pred --c-cceEEecceeecCCCCCC-------CCcHHHhhhhhhhC
Confidence 2 299999999999987543 78999999998553
No 66
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.04 E-value=3.7e-05 Score=76.95 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCCC
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
.++...+.+.+++.+.++||.+|.||.|..... + |.. ..|.+. +.+.||.-+.+.-+-.+...
T Consensus 24 ~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~-e--~~~------~~f~~~~~~~~~yL~~Spql~lk~l~~~------ 88 (322)
T cd00776 24 FRIRSEVLRAFREFLRENGFTEVHTPKITSTDT-E--GGA------ELFKVSYFGKPAYLAQSPQLYKEMLIAA------ 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC-C--ccC------CccccccCCCcceecCCHHHHHHHHHHh------
Confidence 456778888889999999999999999986221 1 111 233332 46788876655544333221
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC--ccchHHHHHHHHH
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ--PEESDSYHEELIR 374 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~--pe~S~~~~ee~l~ 374 (396)
==|++++|+|||+|.+..++ .+.||+|+|.+.... -++..+..++++.
T Consensus 89 --~~~vf~i~~~FR~E~~~~~r------Hl~EFtmlE~e~~~~~~~~dlm~~~e~ll~ 138 (322)
T cd00776 89 --LERVYEIGPVFRAEKSNTRR------HLSEFWMLEAEMAFIEDYNEVMDLIEELIK 138 (322)
T ss_pred --hhhhEEeccccccCCCCcCC------CcceeeccceeeeccCCHHHHHHHHHHHHH
Confidence 13789999999999754222 688999999886533 3455555555554
No 67
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=97.98 E-value=0.0018 Score=65.28 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchH-HHHhhccC----CCCCCcccEEEeCCceEEecCCCHHH-HHHHhccccCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSS-VVEKCGFQ----PRGANTQVYSIEGADQCLIGTAEIPV-GGIHMDSILSES 318 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~-~~~~sG~~----p~~~~~q~y~i~~~~l~L~pTaEvpl-~~l~~~~~l~~~ 318 (396)
..+.+.+.+.+...||+++.+|.++... .+++-+.- .++. .++|++++ ...| .|.+.|. ..... ..
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~-~DTfyI~~-~~lL-RThTSp~qir~L~-----~~ 182 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDM-QDTFYIDD-GLLL-RTHTSPVQIRTME-----KQ 182 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCccccc-CceEEEcC-Ccee-eccCcHHHHHHHH-----hc
Confidence 4566777788888999999999998654 34444321 1222 24777843 3444 4666664 33322 25
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
..|+|+++.|.|||++...+ .+.++|+|+|..++... -+ +.++....+.+++.|
T Consensus 183 ~~Pirif~~G~VyR~D~~Da-------tH~~~FhQleglvvd~~-vt---f~dLK~~L~~fl~~~ 236 (339)
T PRK00488 183 KPPIRIIAPGRVYRNDSDDA-------THSPMFHQVEGLVVDKN-IS---FADLKGTLEDFLKAF 236 (339)
T ss_pred CCCeEEEEeeeEEEcCCCCc-------ccCcceeeEEEEEEeCC-CC---HHHHHHHHHHHHHHH
Confidence 78999999999999986321 15889999999988553 23 355666667777766
No 68
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=3.6e-06 Score=86.38 Aligned_cols=138 Identities=18% Similarity=0.234 Sum_probs=96.4
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHH-HHCCCEeeecCCccchHHHHhhccCCCCCCccc---------EEE------
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEV-IKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQV---------YSI------ 291 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~-~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~---------y~i------ 291 (396)
|+|-- .|-|.+ ..|...++++|+..+ ..-+.-+|..|.+.+..++..|||..+|.+ -| |+.
T Consensus 35 VsGLy-D~GP~G-calk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaSGHVdkF~D-~mvkD~ktGecfRADHLvk~ 111 (599)
T KOG2298|consen 35 VSGLY-DFGPPG-CALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKASGHVDKFAD-WMVKDEKTGECFRADHLVKD 111 (599)
T ss_pred ccccc-ccCCCc-hhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcccchhhhhH-HHhcCccccceehhhHHHHH
Confidence 44542 233333 446789999999977 478999999999999999999999887753 22 110
Q ss_pred -----------------------------------------e----C----------------------CceEEecC-CC
Q 016049 292 -----------------------------------------E----G----------------------ADQCLIGT-AE 303 (396)
Q Consensus 292 -----------------------------------------~----~----------------------~~l~L~pT-aE 303 (396)
. + -..||+|. |.
T Consensus 112 ~~~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQ 191 (599)
T KOG2298|consen 112 AEERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQ 191 (599)
T ss_pred HHHhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCccccc
Confidence 0 0 02356653 33
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc-chHHHHHHH
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE-ESDSYHEEL 372 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe-~S~~~~ee~ 372 (396)
=.+.++-+--.+....||.--+++|..||+|.+++ .||+|||+|++.|+..|+.|+ .+..-|.++
T Consensus 192 G~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISpR----sGLlRvrEF~maEIEHFvdP~~K~h~kF~~V 257 (599)
T KOG2298|consen 192 GQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISPR----SGLLRVREFTMAEIEHFVDPLLKSHPKFSLV 257 (599)
T ss_pred cccccHHHHHHhcCCCCcchHHHhchHhhhccCcc----cCceeEEEeehHHhhccCCCCCCCChhhhhh
Confidence 23444322223456789999999999999999975 499999999999999999995 344434433
No 69
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=97.96 E-value=0.00013 Score=70.49 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccc-hHHHHhhccCCCCC---CcccEEEeC-----CceEEecCCCHHHHHHHhcccc
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVR-SSVVEKCGFQPRGA---NTQVYSIEG-----ADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~-~~~~~~sG~~p~~~---~~q~y~i~~-----~~l~L~pTaEvpl~~l~~~~~l 315 (396)
..+.+-+.+.+...||+++..|.++. ...+.+.+.-++-. ..++|.+.+ ++..+..|.+.|...-+. -
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l---~ 96 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTL---N 96 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHH---T
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHH---H
Confidence 56777788888999999999999965 55666665322211 124677721 223444566666433222 2
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc-CCc
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL-GLH 386 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L-gLp 386 (396)
..+..|+|++++|+|||+|.-.+ -...+|+|+|..++... - .+..+....+.+++.| |..
T Consensus 97 ~~~~~p~kif~iG~VyR~D~~D~-------th~~~f~Qleg~~~~~~-~---~f~~Lk~~l~~l~~~lfG~~ 157 (247)
T PF01409_consen 97 KHRPPPIKIFEIGKVYRRDEIDA-------THLPEFHQLEGLVVDKN-V---TFEDLKGTLEELLKELFGID 157 (247)
T ss_dssp TTSHSSEEEEEEEEEESSSCSBS-------SBESEEEEEEEEEEETT-E----HHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCeEEEecCceEecCCccc-------ccCccceeEeeEEEecc-c---chhHHHHHHHHHHHHHhhcc
Confidence 45678999999999999988432 25889999999876432 2 3467888889999999 887
No 70
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=6.9e-05 Score=78.75 Aligned_cols=116 Identities=20% Similarity=0.316 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceEEecCCCHHHHHHHhccccC
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQCLIGTAEIPVGGIHMDSILS 316 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~L~pTaEvpl~~l~~~~~l~ 316 (396)
.+|+..+...+++.+...||.+|.||.+.++ .|.+.-+ |-+. ..++|-.|-|-.-+-.+.+-.=++
T Consensus 141 l~lR~kv~~~iR~~ld~~gF~EiETPiLtkS--------TPEGARD--fLVPSRv~~G~FYALPQSPQlfKQLLMvsGfd 210 (585)
T COG0173 141 LKLRSKVTKAIRNFLDDQGFLEIETPILTKS--------TPEGARD--FLVPSRVHPGKFYALPQSPQLFKQLLMVAGFD 210 (585)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEeecCccccC--------CCccccc--cccccccCCCceeecCCCHHHHHHHHHHhccc
Confidence 3567788888999999999999999988543 3444322 3222 235676776655444443322122
Q ss_pred CCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHHHHHHH
Q 016049 317 ESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIRIEEDL 379 (396)
Q Consensus 317 ~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~~~e~i 379 (396)
|||++.+|||.|.--+. |+-||||+++.. |++.++..+..|+|+...-.-
T Consensus 211 ------RYyQIarCFRDEDlRaD-------RQPEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~ 261 (585)
T COG0173 211 ------RYYQIARCFRDEDLRAD-------RQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKE 261 (585)
T ss_pred ------ceeeeeeeecccccccc-------cCCcceeEeEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999976544 899999998876 788777777777777655443
No 71
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=97.89 E-value=0.00011 Score=78.97 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCC
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLL 320 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~L 320 (396)
.+++..+++.+++.+.++||.+|.||.|.... -++.+ + |.- -+...+.+.|-.++|.. +|....+. ..+
T Consensus 138 lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~-~eGar--~-f~v--p~~~~~~~~y~L~qSpQ----lykq~l~v-~G~ 206 (583)
T TIGR00459 138 LKLRHKVTKAVRNFLDQQGFLEIETPMLTKST-PEGAR--D-YLV--PSRVHKGEFYALPQSPQ----LFKQLLMV-SGV 206 (583)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeeccCC-CCCCc--c-eee--eeecCCCceeecCCCHH----HHHHHHHh-ccc
Confidence 46678899999999999999999999997532 12111 1 100 01111234442334422 23322111 111
Q ss_pred CceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHHHH
Q 016049 321 PLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIRIE 376 (396)
Q Consensus 321 PlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~~~ 376 (396)
=|+|++++|||+|....+ |.-||+|+|++. |++-++..+..++++..+
T Consensus 207 -ervfqI~~~FR~E~~~t~-------r~pEFT~le~E~af~d~~dvm~~~E~li~~v 255 (583)
T TIGR00459 207 -DRYYQIARCFRDEDLRAD-------RQPEFTQIDMEMSFMTQEDVMELIEKLVSHV 255 (583)
T ss_pred -CcEEEEcceeeCCCCCCC-------CCcccCcceeeecCCCHHHHHHHHHHHHHHH
Confidence 389999999999987644 678999999995 454455666666665433
No 72
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=97.88 E-value=0.00016 Score=72.41 Aligned_cols=117 Identities=20% Similarity=0.306 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe-------CCceEEecCCCHHHHHHHhc
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE-------GADQCLIGTAEIPVGGIHMD 312 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~-------~~~l~L~pTaEvpl~~l~~~ 312 (396)
..++..++++.+++.+.++||.+|.||.|.....- | . ...|.+. +.+.+|..+.+..+-.+...
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~---~-----~-~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~ 91 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCE---G-----G-AEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAA 91 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSS---S-----S-SCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeeccccC---c-----c-ccccccccchhhhcccceecCcChHHHHhhhccc
Confidence 34667889999999999999999999999765311 1 1 2356665 24678888777655444332
Q ss_pred cccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHHHHHH
Q 016049 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIRIEED 378 (396)
Q Consensus 313 ~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~~~e~ 378 (396)
. + =|++++|+|||.|....++ ...||+|+|++.. ++-++..+..++++..+..
T Consensus 92 g------~-~~vf~i~~~FR~E~~~~~r------Hl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~ 145 (335)
T PF00152_consen 92 G------L-ERVFEIGPCFRNEESRTRR------HLPEFTMLEWEMAFADYDDLMDLIEELIKYIFK 145 (335)
T ss_dssp T------H-SEEEEEEEEE-BSSSCBTT------BSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHH
T ss_pred c------c-hhhhheecceeccCccccc------chhhhhhhhhccccCcHHHhHHHHHHHHHHHHH
Confidence 2 1 3799999999999763232 5779999999984 3444455555555554443
No 73
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.84 E-value=0.00031 Score=69.51 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccch-HHHHhhccCCC----CCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRS-SVVEKCGFQPR----GANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESL 319 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~-~~~~~sG~~p~----~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~ 319 (396)
..+.+-+.+.+...||.++.+|.|+.. ..+...+..+. ... ..|.+. +..+|+++....+....... .+
T Consensus 75 ~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~-d~~~l~-d~~vLRtsl~p~ll~~l~~N---~~- 148 (294)
T TIGR00468 75 TRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQ-DTFYIK-DRLLLRTHTTAVQLRTMEEN---EK- 148 (294)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhc-cceeec-CCcceecccHHHHHHHHHhc---CC-
Confidence 345556778889999999999999987 45665543221 110 246665 34566655444454443322 12
Q ss_pred CCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 320 LPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 320 LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
.|+|++++|+|||.+.... + +..||++++..+.... . -|.++....+.++..||+.
T Consensus 149 ~pirlFEiGrVfr~d~~d~---~----~~pef~ql~gl~~~~~--~--~f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTVDA---T----HLPEFHQVEGLVIDKN--V--SFTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred CCceEEEecceEEcCCCCC---c----cCChhhEEEEEEECCC--C--CHHHHHHHHHHHHHHhCCC
Confidence 7999999999999875321 1 2459999999966422 1 1677889999999999985
No 74
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00023 Score=71.33 Aligned_cols=134 Identities=17% Similarity=0.201 Sum_probs=87.2
Q ss_pred ecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCC----CcccEEEeCCc-eEEecCCCHHHHH
Q 016049 235 YLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGA----NTQVYSIEGAD-QCLIGTAEIPVGG 308 (396)
Q Consensus 235 ~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~----~~q~y~i~~~~-l~L~pTaEvpl~~ 308 (396)
+.+|..--+ ..+++.+.+.+...||+++..|. |-.+.|.- +=+.|.+. ....|.+.++. ..|.-|.+-|+..
T Consensus 105 ~~~G~~Hpl-~~~~e~i~~iF~~mGF~~~~gp~-IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~ 182 (335)
T COG0016 105 IYPGSLHPL-TQTIEEIEDIFLGMGFTEVEGPE-IETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQA 182 (335)
T ss_pred CCCCCcChH-HHHHHHHHHHHHHcCceeccCCc-ccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhH
Confidence 344444334 56777788889999999999994 44444442 22233321 12478887543 3344577777655
Q ss_pred HHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcC
Q 016049 309 IHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLG 384 (396)
Q Consensus 309 l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~Lg 384 (396)
-+..+. ..-|+|+++.|+|||++.-.+ | ..++|+|+|..++...- + +..+....++++..++
T Consensus 183 R~l~~~---~~~P~k~~~~grvyR~D~~Da---T----Hs~~FhQiEGlvvd~~~-s---~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 183 RTLAEN---AKIPIKIFSPGRVYRNDTVDA---T----HSPEFHQIEGLVVDKNI-S---FADLKGTLEEFAKKFF 244 (335)
T ss_pred HHHHhC---CCCCceEecccceecCCCCCc---c----cchheeeeEEEEEeCCc-c---HHHHHHHHHHHHHHhc
Confidence 333221 112999999999999995432 2 68999999998875542 3 3467788888888877
No 75
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=97.83 E-value=0.00011 Score=76.47 Aligned_cols=112 Identities=14% Similarity=0.226 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCCC
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
.++..++++.+++.+.++||.+|.||.|... ..++.+ ..|.+. +.+.||.-..+..+-.+....
T Consensus 133 ~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~-~~eg~~--------~~f~v~~~~~~~yL~~Spql~~q~li~~g----- 198 (428)
T TIGR00458 133 FRIRSGVLESVREFLAEEGFIEVHTPKLVAS-ATEGGT--------ELFPITYFEREAFLGQSPQLYKQQLMAAG----- 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCceecC-CCCCCc--------ceeeeEecCCcEEECcCHHHHHHHHHhcc-----
Confidence 4667888999999999999999999998732 122211 233332 467888755554333222211
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHH
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIR 374 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~ 374 (396)
+ =|+|++|+|||+|....++ ...||+++|.+.. .+-++..+..++++.
T Consensus 199 -~-~rVf~i~~~FR~E~~~t~r------Hl~EFt~lE~e~a~~~~~dlm~~~e~li~ 247 (428)
T TIGR00458 199 -F-ERVYEIGPIFRAEEHNTHR------HLNEATSIDIEMAFEDHHDVMDILEELVV 247 (428)
T ss_pred -c-CcEEEEecccccCCCCCcc------chheeeEeeeeeccCCHHHHHHHHHHHHH
Confidence 1 3899999999999764322 4569999999964 444555555555554
No 76
>PLN02903 aminoacyl-tRNA ligase
Probab=97.79 E-value=0.00011 Score=79.65 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHhccccCCC
Q 016049 240 AVMLEMGLINWTLSEVIK-RGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~-~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
..+++..+++.+++.+.+ +||.+|.||.|..... ++.+ + +. ..+.+.....|-.++|.. +|....+. .
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~-eGar--d-f~--v~~~~~~g~~y~L~qSPQ----lykQ~Lm~-~ 270 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP-EGAR--D-YL--VPSRVQPGTFYALPQSPQ----LFKQMLMV-S 270 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC-CCCc--c-cE--EeeecCCCcccccCCCHH----HHHHHHHh-c
Confidence 346678889999999986 9999999999975432 2221 1 11 012222223332334432 23332111 1
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHH
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIR 374 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~ 374 (396)
.+ =|+|++++|||+|..... |.-||+|+|++. |++-++..+..++|+.
T Consensus 271 G~-~RvFqIa~~FR~E~~~t~-------RhpEFTqLE~E~sf~d~~dvm~~~E~li~ 319 (652)
T PLN02903 271 GF-DRYYQIARCFRDEDLRAD-------RQPEFTQLDMELAFTPLEDMLKLNEDLIR 319 (652)
T ss_pred cC-CcEEEEehhhccCCCCCC-------cccceeeeeeeecCCCHHHHHHHHHHHHH
Confidence 11 389999999999986533 678999999985 4544555555565554
No 77
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.76 E-value=9.6e-05 Score=76.97 Aligned_cols=113 Identities=17% Similarity=0.287 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCCC
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
.++..++++.+++.+.++||.+|.||.|... ..++ .. ..|.+. +..+||.-..+..+-.+....
T Consensus 136 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~-~~eg-------~~-~~f~~~~~~~~~~L~~Spql~~q~l~~~g----- 201 (437)
T PRK05159 136 FKIRSEVLRAFREFLYENGFTEIFTPKIVAS-GTEG-------GA-ELFPIDYFEKEAYLAQSPQLYKQMMVGAG----- 201 (437)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCccccc-CCCC-------Cc-ceEeEEecCCceEecCCHHHHHHHHHhcC-----
Confidence 4567788889999999999999999999531 1111 11 234332 567888766555433332211
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCC-ccchHHHHHHHHHH
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQ-PEESDSYHEELIRI 375 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~-pe~S~~~~ee~l~~ 375 (396)
+ =|++++++|||+|.....+ ...||+|+|++. |.+ -++..+..++++..
T Consensus 202 -~-~rVf~i~~~FR~E~~~t~r------Hl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~ 252 (437)
T PRK05159 202 -F-ERVFEIGPVFRAEEHNTSR------HLNEYTSIDVEMGFIDDHEDVMDLLENLLRY 252 (437)
T ss_pred -C-CcEEEEeceeeCCCCCCcc------cchhhheeeeeeeecccHHHHHHHHHHHHHH
Confidence 1 3799999999999874322 467999999995 454 45566666665543
No 78
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.74 E-value=0.00017 Score=72.65 Aligned_cols=118 Identities=20% Similarity=0.224 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh--hccCCCCCCcccEEE--eCCceEEecCCCHHHHHHHhccccC
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK--CGFQPRGANTQVYSI--EGADQCLIGTAEIPVGGIHMDSILS 316 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~--sG~~p~~~~~q~y~i--~~~~l~L~pTaEvpl~~l~~~~~l~ 316 (396)
.++..++++.+++.+.++||.+|.||.|.... -++ .|.. ... .++.+ -+.+.||....+.- -.+....
T Consensus 30 l~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~-~~~~~~g~~-~~~--~~~~~~~~~~~~yL~~Spql~-k~ll~~g--- 101 (335)
T PRK06462 30 LKVQSSILRYTREFLDGRGFVEVLPPIISPST-DPLMGLGSD-LPV--KQISIDFYGVEYYLADSMILH-KQLALRM--- 101 (335)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCeEecCC-CCCCCcccc-CCc--cccccccCCCceeeccCHHHH-HHHHHhh---
Confidence 35677888899999999999999999998651 111 1111 101 12222 15678887655443 2222111
Q ss_pred CCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHH
Q 016049 317 ESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIR 374 (396)
Q Consensus 317 ~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~ 374 (396)
+ =|++++|+|||+|....+ +=-...||+++|.+.. .+-++..+..++++.
T Consensus 102 ---~-~rVfeI~p~FR~E~~~~~----~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~ 152 (335)
T PRK06462 102 ---L-GKIFYLSPNFRLEPVDKD----TGRHLYEFTQLDIEIEGADLDEVMDLIEDLIK 152 (335)
T ss_pred ---c-CcEEEEeccccCCCCCCC----CCCCCCchheeeehhhcCCHHHHHHHHHHHHH
Confidence 1 379999999999987541 0126889999999854 333444544455443
No 79
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.73 E-value=0.00025 Score=71.27 Aligned_cols=111 Identities=15% Similarity=0.212 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEE----eCCceEEecCCCHHHHHHHhccccC
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI----EGADQCLIGTAEIPVGGIHMDSILS 316 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i----~~~~l~L~pTaEvpl~~l~~~~~l~ 316 (396)
.++..++...+++.+.++||.+|.||.|.... +|-. ...|.+ .+...||.-..+..+ ...+.
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~----~~~~-----~~~f~~~~~~~~~~~yL~~Spql~~-----k~ll~ 73 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIA----GGAA-----ARPFITHHNALDMDLYLRIAPELYL-----KRLIV 73 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccCC----CCcc-----ceeEEeccCCCCcceeeccCHHHHH-----HHHHh
Confidence 35567888888999999999999999997553 2211 123333 145678875544433 22221
Q ss_pred CCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHH
Q 016049 317 ESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIR 374 (396)
Q Consensus 317 ~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~ 374 (396)
. .+ =|++++|+|||+|...+ -++.||+|+|.+.. .+-++..+..++++.
T Consensus 74 ~-g~-~~vf~i~~~FR~E~~~~-------rHl~EFt~le~e~~~~~~~~~m~~~e~li~ 123 (329)
T cd00775 74 G-GF-ERVYEIGRNFRNEGIDL-------THNPEFTMIEFYEAYADYNDMMDLTEDLFS 123 (329)
T ss_pred c-CC-CcEEEEeccccCCCCCC-------CCCCceEEEEEeeecCCHHHHHHHHHHHHH
Confidence 1 12 48999999999997631 37899999999754 322444545555544
No 80
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.69 E-value=0.00021 Score=74.81 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEE-----------eCCceEEecCCCHHHH
Q 016049 239 EAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-----------EGADQCLIGTAEIPVG 307 (396)
Q Consensus 239 ~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i-----------~~~~l~L~pTaEvpl~ 307 (396)
...++...++..+++.+.++||.+|.||.|.... |+ .. ...|.+ -+.+.||.-..+..+
T Consensus 131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~----~e----g~-~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l- 200 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITASD----CE----GA-GELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA- 200 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCceeccC----CC----CC-CCceEeecccccccccccCCCcccccCHHHHH-
Confidence 3456678888999999999999999999998652 21 11 124444 145678876655544
Q ss_pred HHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHH
Q 016049 308 GIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIR 374 (396)
Q Consensus 308 ~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~ 374 (396)
.+... .+ =|++++++|||+|..... -.+.||+|+|++.. .+-++..+..++|+.
T Consensus 201 q~l~~------g~-~rVf~i~~~FR~E~~~t~------rHl~EFt~lE~e~~~~~~~~~m~~~e~li~ 255 (450)
T PRK03932 201 EAYAM------AL-GKVYTFGPTFRAENSNTR------RHLAEFWMIEPEMAFADLEDNMDLAEEMLK 255 (450)
T ss_pred HHHHh------cc-CCeEEeeeccccCCCCCc------cccccccccceEEeccCHHHHHHHHHHHHH
Confidence 22221 12 379999999999975211 14669999999854 444555555555554
No 81
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=97.68 E-value=0.00012 Score=71.89 Aligned_cols=112 Identities=20% Similarity=0.271 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEE-eCCceEEecCCCHHHHHHHhccccCCCCCC
Q 016049 243 LEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI-EGADQCLIGTAEIPVGGIHMDSILSESLLP 321 (396)
Q Consensus 243 Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i-~~~~l~L~pTaEvpl~~l~~~~~l~~~~LP 321 (396)
+..++++.+++.+.++||.+|.||.|..... ++.+ + +.. .|.. .+..++|.-..+ +|....+.. .+
T Consensus 3 ~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~-~g~~--~-f~~--~~~~~~~~~~~L~~Spq-----l~lk~ll~~-g~- 69 (280)
T cd00777 3 LRSRVIKAIRNFLDEQGFVEIETPILTKSTP-EGAR--D-FLV--PSRLHPGKFYALPQSPQ-----LFKQLLMVS-GF- 69 (280)
T ss_pred hHHHHHHHHHHHHHHCCCEEEeCCeeecCCC-CCCC--C-cee--ccccCCCceeecccCHH-----HHHHHHHhc-Cc-
Confidence 3567788888899999999999999985443 2222 1 111 1111 123344653333 333322211 11
Q ss_pred ceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHH
Q 016049 322 LKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIR 374 (396)
Q Consensus 322 lK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~ 374 (396)
=|++++++|||+|....| |..||+|+|.... .+-++..+..++++.
T Consensus 70 ~~v~~i~~~fR~e~~~~~-------r~~Ef~~~e~e~~~~~~~dlm~~~e~li~ 116 (280)
T cd00777 70 DRYFQIARCFRDEDLRAD-------RQPEFTQIDIEMSFVDQEDIMSLIEGLLK 116 (280)
T ss_pred CcEEEeccceeCCCCCCC-------ccceeEEeEeeeccCCHHHHHHHHHHHHH
Confidence 389999999999987654 5669999998864 333445555555553
No 82
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.66 E-value=0.00037 Score=73.70 Aligned_cols=114 Identities=20% Similarity=0.227 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEE----eCCceEEecCCCHHHHHHHhccc
Q 016049 239 EAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI----EGADQCLIGTAEIPVGGIHMDSI 314 (396)
Q Consensus 239 ~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i----~~~~l~L~pTaEvpl~~l~~~~~ 314 (396)
...++...++..+++.+.++||.+|.||.|... .+|-.- ..|.+ -+.+.||+=..+..+-.+....
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~----~~Ga~a-----~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g- 239 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPI----AGGAAA-----RPFITHHNALDIDLYLRIAPELYLKRLIVGG- 239 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceecc----CCCccc-----eeeeeccccCCCceEeccCHHHHHHHHHhcc-
Confidence 344567788899999999999999999999633 233211 12221 1456788755454433332211
Q ss_pred cCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHHH
Q 016049 315 LSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIRI 375 (396)
Q Consensus 315 l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~~ 375 (396)
+ =|+|++|+|||+|-.. + -++-||+|+|++. |++-++..+..++++..
T Consensus 240 -----~-~rVfei~~~FR~E~~~----~---rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~ 288 (491)
T PRK00484 240 -----F-ERVYEIGRNFRNEGID----T---RHNPEFTMLEFYQAYADYNDMMDLTEELIRH 288 (491)
T ss_pred -----C-CcEEEEecceecCCCC----C---CcCCceEEEEEEEecCCHHHHHHHHHHHHHH
Confidence 1 3899999999999764 2 3789999999975 44334455555555543
No 83
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.64 E-value=0.00013 Score=72.43 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe-------CCceEEecCCCHHHHHHHhcccc
Q 016049 243 LEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE-------GADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 243 Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~-------~~~l~L~pTaEvpl~~l~~~~~l 315 (396)
++..+++.+++.+.++||.+|.||.|.....-++ .. ..|++. +...||.-..+..+-.+....
T Consensus 3 ~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~--~~------~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g-- 72 (304)
T TIGR00462 3 ARARLLAAIRAFFAERGVLEVETPLLSPAPVTDP--HL------DAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAG-- 72 (304)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCc--CC------cceeeeccCCCCCCcceeeecCHHHHHHHHHhcc--
Confidence 3567888899999999999999999987642211 11 123222 346788766555443322211
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC-ccchHHHHHHHHHHHHHHHHHcCCcEEEEe
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ-PEESDSYHEELIRIEEDLYSSLGLHFKLLL 391 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~-pe~S~~~~ee~l~~~e~il~~LgLpyrvv~ 391 (396)
+ =|++++|+|||+|... . -++-||+++|.+.... -++..+..++++ ..+++.+..|+..+.
T Consensus 73 ----~-~rVfeigp~FRaE~~~-~------rHl~EFtmLE~e~~~~d~~d~m~~~e~li---~~i~~~~~~~~~~it 134 (304)
T TIGR00462 73 ----S-GPIFQICKVFRNGERG-R------RHNPEFTMLEWYRPGFDYHDLMDEVEALL---QELLGDPFAPWERLS 134 (304)
T ss_pred ----C-CCEEEEcCceeCCCCC-C------CcccHHHhHHHHHHcCCHHHHHHHHHHHH---HHHHHhcCCCcEEEE
Confidence 2 3899999999999873 2 2688999999864322 123333333333 333444455666543
No 84
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.62 E-value=0.00031 Score=73.54 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe-----------CCceEEecCCCHHHH
Q 016049 239 EAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE-----------GADQCLIGTAEIPVG 307 (396)
Q Consensus 239 ~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~-----------~~~l~L~pTaEvpl~ 307 (396)
...+++..+++.+++.+.++||.+|.||.|..... ++.+ +.|.+. +.+.||.-..+..+-
T Consensus 134 ~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~-eg~~--------~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq 204 (453)
T TIGR00457 134 AVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC-EGAG--------ELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLE 204 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC-CCCC--------CceEecccccccchhccCCccccccCHHHHHH
Confidence 34567888999999999999999999999986441 1111 123222 345677655444332
Q ss_pred HHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHH
Q 016049 308 GIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIR 374 (396)
Q Consensus 308 ~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~ 374 (396)
.+. ..+ =|++++++|||+|.....+ .+-||+|+|+.. |++-++..+..++++.
T Consensus 205 ~l~-------~g~-~rVf~i~~~FR~E~~~t~r------Hl~EFt~le~e~~~~~~~dvm~~~E~lv~ 258 (453)
T TIGR00457 205 TYA-------LAL-SKVYTFGPTFRAEKSNTSR------HLSEFWMIEPEMAFANLNDLLQLAETLIK 258 (453)
T ss_pred HHh-------hcc-cCceEeeeccccCCCCCCc------CcchhccceeeeecCCHHHHHHHHHHHHH
Confidence 221 122 3799999999999764221 456999999985 4544555555555544
No 85
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.61 E-value=0.0018 Score=61.13 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHCCCEeeecCCccch-HHHHhhccCCCCCC---cccEEEeCC-ceEEecCCCHHHHHHHhccccCCCCC
Q 016049 246 GLINWTLSEVIKRGFTPLTTPEIVRS-SVVEKCGFQPRGAN---TQVYSIEGA-DQCLIGTAEIPVGGIHMDSILSESLL 320 (396)
Q Consensus 246 aLi~~~~d~~~~~Gy~ei~tP~lv~~-~~~~~sG~~p~~~~---~q~y~i~~~-~l~L~pTaEvpl~~l~~~~~l~~~~L 320 (396)
.+.+.+++.+...||.|+.|+.|+.. ..+...|..+.... ...+++.+. .-+|+++.-..+....... ..
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~~~~LR~sLlp~LL~~l~~N-----~~ 79 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPARLLLRTHTSAVQARALAKL-----KP 79 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCceEEEeccCcHHHHHHHHhc-----CC
Confidence 45566778889999999999999988 35555553221000 023455553 2577777666665543322 67
Q ss_pred CceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcC
Q 016049 321 PLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLG 384 (396)
Q Consensus 321 PlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~Lg 384 (396)
|+|++++|+|||.+....+ ++.||++++......+- -|.++....+.+++.+|
T Consensus 80 ~~~lFEiG~Vf~~~~~~~~-------~~~E~~~l~~~~~g~~~----df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 80 PIRIFSIGRVYRNDEIDAT-------HLPEFHQIEGLVVDKGL----TFADLKGTLEEFAKELF 132 (218)
T ss_pred CeeEEEEcCeEECCCCCCC-------cCCccEEEEEEEECCCC----CHHHHHHHHHHHHHHhc
Confidence 9999999999998753111 23499999988766431 26788999999999999
No 86
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=97.61 E-value=0.00031 Score=75.73 Aligned_cols=115 Identities=21% Similarity=0.292 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCC-cccEEEeCCceEEecCCCHHHHHHHhccccCCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGAN-TQVYSIEGADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~-~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
..+++..+...+++.+.++||.+|.||.|..... ++.+ + |.- ..+| .+..++| ++|.. +|....+. .
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~-ega~--~-f~v~~~~~--~~~~~~L-~qSpq----l~kq~l~~-~ 207 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP-EGAR--D-YLVPSRVH--PGKFYAL-PQSPQ----LFKQLLMV-A 207 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC-CCCc--c-ceeccccc--CCceeec-CCCHH----HHHHHHHh-c
Confidence 3466788899999999999999999999986431 2211 1 100 0011 1222344 44432 23322111 1
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHH
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIR 374 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~ 374 (396)
.+ =|+|++++|||+|....+ |.-||+|+|++. |.+-++..+..++++.
T Consensus 208 g~-~rvfqi~~~FR~E~~~~~-------r~~EFt~le~e~af~~~~dvm~~~E~li~ 256 (588)
T PRK00476 208 GF-DRYYQIARCFRDEDLRAD-------RQPEFTQIDIEMSFVTQEDVMALMEGLIR 256 (588)
T ss_pred cc-CceEEEeceeecCCCCCC-------cCcccccceeeecCCCHHHHHHHHHHHHH
Confidence 11 389999999999986433 555999999985 4444555555555554
No 87
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.55 E-value=0.00023 Score=77.79 Aligned_cols=115 Identities=20% Similarity=0.283 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEE--EeCCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYS--IEGADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~--i~~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..+++..+++.+++.+.++||.+|.||.|.... -+ |--+ .++. ......|..++|.. +|....+.
T Consensus 155 ~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~-~e--GAr~-----~~~p~~~~~~~~y~L~qSPQ----lykq~lm~- 221 (706)
T PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPILTKST-PE--GARD-----YLVPSRIHPKEFYALPQSPQ----LFKQLLMI- 221 (706)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC-CC--CCcc-----eEEeeecCCCcceecCCCHH----HHHHHHHh-
Confidence 346678889999999999999999999998533 11 2111 1111 11223342334432 23332211
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHHH
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIRI 375 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~~ 375 (396)
..+ =|+|++++|||.|..... |.-||+|+|++. |.+-++..+..++|+..
T Consensus 222 ~G~-~rvfqI~~~FR~E~~~t~-------r~pEFT~LE~E~af~d~~dvm~l~E~li~~ 272 (706)
T PRK12820 222 AGF-ERYFQLARCFRDEDLRPN-------RQPEFTQLDIEASFIDEEFIFELIEELTAR 272 (706)
T ss_pred ccC-CcEEEEechhcCCCCCCC-------cCccccccceeeccCCHHHHHHHHHHHHHH
Confidence 111 389999999999986432 679999999995 55555566666666643
No 88
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.52 E-value=0.0014 Score=68.90 Aligned_cols=129 Identities=22% Similarity=0.371 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHH-hhccCCC-----CCCcccEEEeCC------------------------
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVE-KCGFQPR-----GANTQVYSIEGA------------------------ 294 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~-~sG~~p~-----~~~~q~y~i~~~------------------------ 294 (396)
..+++.+.+.+...||+++.+...|-.+.|. -+=++|. +. .++|.+++.
T Consensus 224 ~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~-qDTFyl~~~~~~~~~p~~~~erVk~~He~G~~g 302 (492)
T PLN02853 224 LKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDS-HDTFFLKAPATTRQLPEDYVERVKTVHESGGYG 302 (492)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCc-cceEEEcCccccccCcHHHHHHHHHHHhcCCCC
Confidence 5677788888999999999543344444443 2222332 22 247777620
Q ss_pred -------------ceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC
Q 016049 295 -------------DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ 361 (396)
Q Consensus 295 -------------~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~ 361 (396)
...|..|.+.++..-+.........-|+|++++++|||+|+-.+ | ...+|+|+|.+++..
T Consensus 303 S~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDa---t----H~~eFhQ~EG~vvd~ 375 (492)
T PLN02853 303 SIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDR---T----HLAEFHQVEGLVCDR 375 (492)
T ss_pred ccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCc---c----cCccceeEEEEEEeC
Confidence 12344566666443222211112246999999999999997432 1 689999999998854
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC
Q 016049 362 PEESDSYHEELIRIEEDLYSSLGL 385 (396)
Q Consensus 362 pe~S~~~~ee~l~~~e~il~~LgL 385 (396)
. -+ +..++....++|+.||.
T Consensus 376 ~-~t---~~~L~g~l~~f~~~lg~ 395 (492)
T PLN02853 376 G-LT---LGDLIGVLEDFFSRLGM 395 (492)
T ss_pred C-CC---HHHHHHHHHHHHHHcCC
Confidence 3 23 34688888999999987
No 89
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.51 E-value=0.00024 Score=75.22 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEE----eCCceEEecCCCHHHHHHHhcccc
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI----EGADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i----~~~~l~L~pTaEvpl~~l~~~~~l 315 (396)
..++...+++.+++.+.++||.+|.||.|.... +|-.- .-|.+ -+.++||+=..|..+-.+....
T Consensus 171 ~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~----gga~a-----~pF~t~~~~~~~~~yLriSpELylKrlivgG-- 239 (496)
T TIGR00499 171 TFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP----GGANA-----RPFITHHNALDMDLYLRIAPELYLKRLIVGG-- 239 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC----CCccc-----eeEEeecccCCCceEEecCHHHHHHHHHhCC--
Confidence 445677889999999999999999999996432 23111 12222 2457888866665554443222
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIRIE 376 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~~~ 376 (396)
+ =|+|++|+|||+|-.. + -+.-||+++|.+.. ++-++..+..++|+..+
T Consensus 240 ----~-~rVfeIg~~FRnE~~~----~---rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i 289 (496)
T TIGR00499 240 ----F-EKVYEIGRNFRNEGVD----T---THNPEFTMIEFYQAYADYEDLMDLTENLFKFL 289 (496)
T ss_pred ----C-CceEEEecceecCCCC----C---cccchhheeehhhhcCCHHHHHHHHHHHHHHH
Confidence 1 2799999999999763 2 37889999999854 33344555555555433
No 90
>PLN02502 lysyl-tRNA synthetase
Probab=97.50 E-value=0.00032 Score=74.99 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEE-EeCCceEEecCCCHHHHHHHhccccCCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYS-IEGADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~-i~~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
..++...+++.+++++.++||.+|.||.|.... +|-..+.+. +|. --+.++||+=..|..+-.+....
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~----gGA~a~pF~--t~~n~~~~~~yL~~Spel~lK~L~v~g----- 296 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA----GGAAARPFV--THHNDLNMDLYLRIATELHLKRLVVGG----- 296 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC----CCcccccee--eecccCCcceeeecCHHHHHHHHHHhc-----
Confidence 345677888999999999999999999996532 232111111 110 11457888866666554443322
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHHH
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIRI 375 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~~ 375 (396)
+ =|+|++|+|||+|-.. + -+..||+++|.+. +++-++..+..++|+..
T Consensus 297 -~-~rVfeIg~~FRnE~~~----~---rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~ 345 (553)
T PLN02502 297 -F-ERVYEIGRQFRNEGIS----T---RHNPEFTTCEFYQAYADYNDMMELTEEMVSG 345 (553)
T ss_pred -c-CCEEEEcCeeeCCCCC----C---ccccceeehhhhhhcCCHHHHHHHHHHHHHH
Confidence 1 3799999999999653 2 4899999999975 44435555555655543
No 91
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.49 E-value=0.00042 Score=75.16 Aligned_cols=112 Identities=13% Similarity=0.193 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEE----eCCceEEecCCCHHHHHHHhcccc
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI----EGADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i----~~~~l~L~pTaEvpl~~l~~~~~l 315 (396)
..++..++++.+++++.++||.+|.||.|.... .+.|- ..|.+ .+.++||+=..|..+-.+....
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~--~ga~a-------~pF~t~~n~~~~~~yL~~SPELylKrLivgG-- 300 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA--SGANA-------KSFVTHHNANAMDLFLRVAPELHLKQCIVGG-- 300 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC--CCCCc-------cceEeecccCCCCEEecCChHHHHHHHhhcc--
Confidence 345678899999999999999999999995321 11121 12222 2457888766555444333221
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC-ccchHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ-PEESDSYHEELIR 374 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~-pe~S~~~~ee~l~ 374 (396)
+ =|+|++|+|||+|-... -+.-||+++|.+..-. -++..+..++++.
T Consensus 301 ----~-erVyeIg~~FRnE~~~~-------rH~pEFTmlE~y~a~~d~~d~m~l~E~li~ 348 (659)
T PTZ00385 301 ----M-ERIYEIGKVFRNEDADR-------SHNPEFTSCEFYAAYHTYEDLMPMTEDIFR 348 (659)
T ss_pred ----c-CCEEEEeceecCCCCCC-------CccccccceeeeeecCCHHHHHHHHHHHHH
Confidence 1 38999999999997641 2788999999996432 2344444444443
No 92
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.49 E-value=0.00041 Score=73.54 Aligned_cols=117 Identities=16% Similarity=0.189 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESL 319 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~ 319 (396)
..++...++..+++++.++||.+|.||.|... . .|-..+-+...... -+.+.||+=..|..+=.+....
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~---~-gGa~a~pF~t~~~~-~~~~~yL~~SpELylKrlivgG------ 251 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI---P-GGASARPFITHHNA-LDLDMYLRIAPELYLKRLVVGG------ 251 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec---C-CCCcccceeccccc-CCcceeeecCHHHHHHHHHhcc------
Confidence 34567889999999999999999999999542 1 13111001000001 1346788766565544433222
Q ss_pred CCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHHH
Q 016049 320 LPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIRI 375 (396)
Q Consensus 320 LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~~ 375 (396)
+ =|+|++|+|||+|-.. . -+.-||+++|.+.. ++-++..+..++|+..
T Consensus 252 ~-~rVfeIg~~FRnE~~~-~------rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~ 300 (505)
T PRK12445 252 F-ERVFEINRNFRNEGIS-V------RHNPEFTMMELYMAYADYHDLIELTESLFRT 300 (505)
T ss_pred C-CcEEEEehhccCCCCC-C------CcCcccceeeeeeecCCHHHHHHHHHHHHHH
Confidence 1 3799999999999752 1 37899999999975 3334555555555543
No 93
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.48 E-value=0.0004 Score=74.73 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEE-EeCCceEEecCCCHHHHHHHhccccCCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYS-IEGADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~-i~~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
..+++..+++.+++++.++||.+|.||.|.... + |-..+.+. ++. --+.++||+=..|..+=.+....
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~---G-GA~a~PF~--T~~n~~d~~lYLriSpEL~lKrLlvgG----- 320 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA---G-GANARPFI--THHNDLDLDLYLRIATELPLKMLIVGG----- 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC---C-cccceeEE--ecccCCCcceEEeecHHHHHHHHHHhC-----
Confidence 345678899999999999999999999997652 1 32211110 000 01457899866666655544322
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHH
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIR 374 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~ 374 (396)
+ =|+|++|+|||+|... + .+.-||+++|.+.. ++-++.++..++++.
T Consensus 321 -~-~rVfeIgp~FRnE~~~----~---rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~ 368 (585)
T PTZ00417 321 -I-DKVYEIGKVFRNEGID----N---THNPEFTSCEFYWAYADFYDLIKWSEDFFS 368 (585)
T ss_pred -C-CCEEEEcccccCCCCC----C---CccceeeeeeeeeecCCHHHHHHHHHHHHH
Confidence 1 2799999999999753 1 36889999999964 333455555555554
No 94
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.41 E-value=0.0018 Score=69.59 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchH
Q 016049 238 NEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSS 272 (396)
Q Consensus 238 g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~ 272 (396)
....+++.++...+.+++.++||.+|.||.|...+
T Consensus 212 ~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 212 SSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 34457788899999999999999999999997654
No 95
>PLN02850 aspartate-tRNA ligase
Probab=97.41 E-value=0.00049 Score=73.35 Aligned_cols=113 Identities=17% Similarity=0.296 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..++..++.+.+++++.++||.+|.||.|+.... ++ | . ..|.+. +...||.-..+..+-.+...
T Consensus 224 ifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~-eg-g------a-~~F~v~yf~~~~~L~qSpql~kq~li~~----- 289 (530)
T PLN02850 224 IFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS-EG-G------S-AVFRLDYKGQPACLAQSPQLHKQMAICG----- 289 (530)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC-cc-c------c-ceeeeccCCcceecCCCHHHHHHHHHHh-----
Confidence 3466778999999999999999999999954321 22 1 1 245443 46678875544433222211
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEE-EeCCc-cchHHHHHHHHH
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMF-VFCQP-EESDSYHEELIR 374 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f-~f~~p-e~S~~~~ee~l~ 374 (396)
.+ =|+|++|+|||+|-....+ .+.||+++|+. .|... ++..+..++++.
T Consensus 290 -g~-~rVfeIgp~FRaE~s~t~R------Hl~EFt~Le~Em~~~~~y~evm~~~E~ll~ 340 (530)
T PLN02850 290 -DF-RRVFEIGPVFRAEDSFTHR------HLCEFTGLDLEMEIKEHYSEVLDVVDELFV 340 (530)
T ss_pred -cC-CceEEEecccccCCCCCCc------cchhhccchhhhhhhcCHHHHHHHHHHHHH
Confidence 12 2899999999999853222 46799999888 45432 445555555554
No 96
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.40 E-value=0.00037 Score=74.53 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..++..++.+.+++.+.++||.+|.||.|+... -++ | . .+|.+. +...||.-..+.. ....+ .
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~-~eg-g-a------~~F~v~yf~~~~~L~qSpql~-----kq~li-~ 276 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAP-SEG-G-A------NVFKLEYFNRFAYLAQSPQLY-----KQMVL-Q 276 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCC-CCc-c-c------cccccccCCCCeecCCCHHHH-----HHHHH-h
Confidence 346677899999999999999999999998754 221 1 1 233332 4567776544432 22111 1
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEE-EeCCc-cchHHHHHHHHH
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMF-VFCQP-EESDSYHEELIR 374 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f-~f~~p-e~S~~~~ee~l~ 374 (396)
..+ =|+|++|+|||+|.....+ .+.||+++|+. .|... ++..+..++++.
T Consensus 277 ~g~-~rVfeI~p~FRaE~s~T~R------Hl~EFt~Le~E~~~~~~y~evm~~~e~l~~ 328 (550)
T PTZ00401 277 GDV-PRVFEVGPVFRSENSNTHR------HLTEFVGLDVEMRINEHYYEVLDLAESLFN 328 (550)
T ss_pred cCC-CCEEEEeCeEeCCCCCCCC------CccchhhhhhhhHhcCCHHHHHHHHHHHHH
Confidence 112 3799999999999874222 46699999994 45433 445555555554
No 97
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.35 E-value=0.002 Score=69.21 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEeeecCCccchH
Q 016049 239 EAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSS 272 (396)
Q Consensus 239 ~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~ 272 (396)
...+++.++.+.+++++.++||.+|.||.|+..+
T Consensus 169 Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 169 AVARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 4457788899999999999999999999997654
No 98
>PLN02532 asparagine-tRNA synthetase
Probab=97.25 E-value=0.0021 Score=69.57 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=34.9
Q ss_pred eEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHHHH
Q 016049 323 KYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIRIE 376 (396)
Q Consensus 323 K~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~~~ 376 (396)
|+|++|+|||+|.....+ .+.||+++|... |+.-++.++..++|+..+
T Consensus 391 rVYeIgP~FRAE~s~T~R------HL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v 439 (633)
T PLN02532 391 NVYTFGPRFRADRIDSAR------HLAEMWMVEVEMAFSELEDAMNCAEDYFKFL 439 (633)
T ss_pred ceEEEccceecCCCCCCc------ccccccceeeeehhcCHHHHHHHHHHHHHHH
Confidence 799999999999874222 589999999985 454455666666665443
No 99
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.00062 Score=70.67 Aligned_cols=113 Identities=21% Similarity=0.375 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHH-HCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceEEecCCCHHHHHHHhcccc
Q 016049 241 VMLEMGLINWTLSEVI-KRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~-~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~L~pTaEvpl~~l~~~~~l 315 (396)
.+|..+++.-+++.+. ..||.+|.||.+.+. .|.+.. =|-+. ...+|-.|-|-..+-.+.+-.-+
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtLFkr--------TPgGA~--EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGi 247 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTLFKR--------TPGGAR--EFVVPTRTPRGKFYALPQSPQQFKQLLMVSGI 247 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcchhcc--------CCCccc--eeecccCCCCCceeecCCCHHHHHHHHHHhch
Confidence 4567778878888774 679999999988543 233222 23222 13456666665555555443323
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIRIE 376 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~~~ 376 (396)
+ |||++.+|||.|..-.. |+-||||++|.. |+..++.++..|+++.-+
T Consensus 248 d------rYyQiARCfRDEdlR~D-------RQPEFTQvD~EMsF~~~~dim~liEdll~~~ 296 (628)
T KOG2411|consen 248 D------RYYQIARCFRDEDLRAD-------RQPEFTQVDMEMSFTDQEDIMKLIEDLLRYV 296 (628)
T ss_pred h------hHHhHHhhhcccccCcc-------cCCcceeeeeEEeccCHHHHHHHHHHHHHHh
Confidence 2 79999999999976543 899999999887 454455555555555443
No 100
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0029 Score=65.57 Aligned_cols=114 Identities=18% Similarity=0.302 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccC
Q 016049 239 EAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILS 316 (396)
Q Consensus 239 ~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~ 316 (396)
...+++..+...+.+++.++||.+|.||.|+.... ... .++|.+. +.+.||.=++..-.-.+... +
T Consensus 132 Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~--------EGg-~elF~v~yf~~~a~LtqS~QLyke~~~~a--l- 199 (435)
T COG0017 132 AVFKIRSSILRAIREFFYENGFTEVHTPIITASAT--------EGG-GELFKVDYFDKEAYLTQSPQLYKEALAAA--L- 199 (435)
T ss_pred HHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC--------CCC-ceeEEEeecCcceEEecCHHHHHHHHHHH--h-
Confidence 44567788888899999999999999999975431 111 2578775 45677764433221111111 2
Q ss_pred CCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccchHHHHHHHHHH
Q 016049 317 ESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEESDSYHEELIRI 375 (396)
Q Consensus 317 ~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~S~~~~ee~l~~ 375 (396)
=|++.+|++||.|.+..-+ .+-||+++|+.. |++-++..+..++|+..
T Consensus 200 -----~rVf~igP~FRAE~s~T~R------HL~EF~~ld~Emaf~~~~d~m~l~E~~i~~ 248 (435)
T COG0017 200 -----ERVFTIGPTFRAEKSNTRR------HLSEFWMLDPEMAFADLNDVMDLAEELIKY 248 (435)
T ss_pred -----CceEEecCceecCCCCCcc------hhhhHheecceeccCcHHHHHHHHHHHHHH
Confidence 2799999999999985332 588999998876 45545566665665544
No 101
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.14 E-value=0.0042 Score=66.72 Aligned_cols=113 Identities=17% Similarity=0.259 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe-------------------------
Q 016049 238 NEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE------------------------- 292 (396)
Q Consensus 238 g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~------------------------- 292 (396)
....+++.++...+++.+.++||.+|.||.|...+ -+|.| ++|.+.
T Consensus 223 ~ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~-~EGA~--------e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~ 293 (565)
T PLN02603 223 GAVARVRNALAYATHKFFQENGFVWVSSPIITASD-CEGAG--------EQFCVTTLIPNSAENGGSLVDDIPKTKDGLI 293 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCeecccC-CCccc--------cCceeeeccccccccccccccccccCccccc
Confidence 34457788899999999999999999999997543 12212 122221
Q ss_pred -------CCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCCccc
Q 016049 293 -------GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQPEE 364 (396)
Q Consensus 293 -------~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~pe~ 364 (396)
+...||.-... +|..-.. ..| =|++++|+|||+|.....+ .+.||+|+|... |+.-++
T Consensus 294 ~~~~dyF~~~~~LtvS~Q-----L~~E~~~--~~l-~rVy~igp~FRaE~s~T~R------HL~EF~mlE~E~af~dl~d 359 (565)
T PLN02603 294 DWSQDFFGKPAFLTVSGQ-----LNGETYA--TAL-SDVYTFGPTFRAENSNTSR------HLAEFWMIEPELAFADLND 359 (565)
T ss_pred ccchhhhCcceeeccCch-----HHHHHHH--hcc-cceEEEecceeCCCCCCcc------ccccceeeeeeeecCCHHH
Confidence 12334543321 1111111 112 3789999999999875332 467999999886 544344
Q ss_pred hHHHHHHHH
Q 016049 365 SDSYHEELI 373 (396)
Q Consensus 365 S~~~~ee~l 373 (396)
.....+.++
T Consensus 360 ~m~~~E~~l 368 (565)
T PLN02603 360 DMACATAYL 368 (565)
T ss_pred HHHHHHHHH
Confidence 444444443
No 102
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.06 E-value=0.0015 Score=75.08 Aligned_cols=112 Identities=16% Similarity=0.220 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEE----eCCceEEecCCCHHHHHHHhcccc
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI----EGADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i----~~~~l~L~pTaEvpl~~l~~~~~l 315 (396)
..+++.++++.+++.+.++||.||.||.|.... +|-.- ..|.+ -+.++||+=..|..+-.+....
T Consensus 769 ~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~----gGa~a-----~pF~t~~~~~~~~~yLriSPELylKrLivgG-- 837 (1094)
T PRK02983 769 LLRARSAVVRAVRETLVARGFLEVETPILQQVH----GGANA-----RPFVTHINAYDMDLYLRIAPELYLKRLCVGG-- 837 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC----CCccc-----ceeEeeecCCCccchhhcChHHHHHHHHhcc--
Confidence 445678899999999999999999999996332 23211 12311 1346788765555444433221
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC-ccchHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ-PEESDSYHEELIR 374 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~-pe~S~~~~ee~l~ 374 (396)
+ =|+|++|+|||+|-.. + -+.-||+++|.+..-. -++.++..++++.
T Consensus 838 ----~-erVFEIg~~FRnE~~~----~---rHnpEFTmLE~y~a~~dy~d~m~l~E~li~ 885 (1094)
T PRK02983 838 ----V-ERVFELGRNFRNEGVD----A---THNPEFTLLEAYQAHADYDTMRDLTRELIQ 885 (1094)
T ss_pred ----c-CceEEEcceecCCCCC----C---CccccccchhhhhhcCCHHHHHHHHHHHHH
Confidence 1 3799999999999764 2 2788999999886432 2344555555553
No 103
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=96.24 E-value=0.071 Score=57.32 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHH-HHhhccCCCCCCcccEEEeC----CceEEecCCCHHHHHHHhccccCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSV-VEKCGFQPRGANTQVYSIEG----ADQCLIGTAEIPVGGIHMDSILSESL 319 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~-~~~sG~~p~~~~~q~y~i~~----~~l~L~pTaEvpl~~l~~~~~l~~~~ 319 (396)
+.+.+.+++.+...||+|+.|..|++.+. +...|..+. ....++.+ +.-+||++.-..+........ ...
T Consensus 362 ~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~---~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~--~~~ 436 (552)
T PRK09616 362 EKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPE---EDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK--HRE 436 (552)
T ss_pred HHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCC---CCeEEEcCCCccchheEeccchHHHHHHHHhcc--CCC
Confidence 55667778888999999999999999976 666554321 02466654 334666665555655544433 446
Q ss_pred CCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEE
Q 016049 320 LPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKL 389 (396)
Q Consensus 320 LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrv 389 (396)
.|+|+|++|+||+.+... .+ ..+|+.++-......+ . -|.++....+.++..||+++..
T Consensus 437 ~~~~lFEiG~Vf~~~~~~---~~----~~~e~~~l~~~~~g~~--~--df~dlKg~ve~ll~~lgi~~~~ 495 (552)
T PRK09616 437 YPQKIFEIGDVVLIDEST---ET----GTRTERKLAAAIAHSE--A--SFTEIKSVVQALLRELGIEYEV 495 (552)
T ss_pred CCeeEEEeeEEEecCCcc---cc----CcchhhEEEEEEECCC--C--CHHHHHHHHHHHHHHcCCeEEE
Confidence 799999999999875421 11 2358887776655432 2 2678889999999999986443
No 104
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=95.93 E-value=0.017 Score=60.38 Aligned_cols=60 Identities=22% Similarity=0.370 Sum_probs=46.6
Q ss_pred CCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 317 ESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 317 ~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
...+|+|++++|+|||+|... |. -+.++|+|+|..++... -+ +.++....+.+++.||+.
T Consensus 203 ~~~~PiRIFsIGRVfRrD~~~---Da---THl~eFhQlEGLVVded-VS---f~DLKgvLe~LLr~LG~~ 262 (533)
T TIGR00470 203 KRKLPLKLFSIDRCFRREQRE---DR---SHLMTYHSASCVVVDEE-VS---VDDGKAVAEGLLAQFGFT 262 (533)
T ss_pred cCCCCeEEEeeeeEEecCCCC---CC---ccCceeeeEEEEEECCC-CC---HHHHHHHHHHHHHHhCCc
Confidence 457899999999999999531 11 15899999999887543 23 467889999999999974
No 105
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.032 Score=56.90 Aligned_cols=100 Identities=21% Similarity=0.279 Sum_probs=65.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----------CCceEEecCCCHH
Q 016049 236 LKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----------GADQCLIGTAEIP 305 (396)
Q Consensus 236 l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----------~~~l~L~pTaEvp 305 (396)
.-++.++++.++..-..+.+.++||+.|.||.|-..+. +|.| +||.+. |+..+|.-....-
T Consensus 127 ~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC-EGaG--------E~F~vtt~~d~~~~fFg~p~fLTVSgQLh 197 (446)
T KOG0554|consen 127 KVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC-EGAG--------EVFQVTTLTDYSKDFFGRPAFLTVSGQLH 197 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC-CCCc--------ceEEEEecCcccccccCCceEEEEeceeh
Confidence 44667788888887788889999999999999866542 2222 466654 2345554333222
Q ss_pred HHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE
Q 016049 306 VGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV 358 (396)
Q Consensus 306 l~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~ 358 (396)
+-.+.. -+ =|.+.+|++||.|.+..-+ .+-+|.|+|...
T Consensus 198 lE~~a~--~L------srvyTfgP~FRAEnS~tsR------HLAEFwMlEaE~ 236 (446)
T KOG0554|consen 198 LEAMAC--AL------SRVYTFGPTFRAENSHTSR------HLAEFWMLEAEL 236 (446)
T ss_pred HHHHHh--hh------cceEeeccceecccCCchh------HHhhhhhhhhHH
Confidence 222211 11 2688999999999875443 577899988654
No 106
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.031 Score=54.90 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe---CCceEEecCCCHHHHHHHhccccCCCCC
Q 016049 244 EMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE---GADQCLIGTAEIPVGGIHMDSILSESLL 320 (396)
Q Consensus 244 e~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~---~~~l~L~pTaEvpl~~l~~~~~l~~~~L 320 (396)
+.++++-++.++..+||.+|.||.+-..-+-+.+ +.-|. .+...-. +..+||...-|..+-.+.+..
T Consensus 19 Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~h--L~~F~-Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag------- 88 (322)
T COG2269 19 RAAIIAAIRRFFAERGVLEVETPALSVAPVTDIH--LHPFE-TEFLGPGGAKGKPLWLHTSPEYHMKRLLAAG------- 88 (322)
T ss_pred HHHHHHHHHHHHHHcCceEecchHhhcCCCCccc--eeeee-eEEeccCccccceeeeecCcHHHHHHHHHcc-------
Confidence 4567778888889999999999988543332221 11111 1111111 135899877777666554433
Q ss_pred CceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC
Q 016049 321 PLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC 360 (396)
Q Consensus 321 PlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~ 360 (396)
--.++++|+|||++.- | =+.--||||+|-+...
T Consensus 89 ~~~ifql~kvfRN~E~--G-----~~H~PEFTMLEWYrv~ 121 (322)
T COG2269 89 SGPIFQLGKVFRNEEM--G-----RLHNPEFTMLEWYRVG 121 (322)
T ss_pred CCcchhhhHHHhcccc--c-----ccCCCceeEeeeeccC
Confidence 2358999999999753 2 2234599999999763
No 107
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.049 Score=57.22 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccE-EEeCCceEEecCCCHHHHHHHhccccCCCCCCc
Q 016049 244 EMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVY-SIEGADQCLIGTAEIPVGGIHMDSILSESLLPL 322 (396)
Q Consensus 244 e~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y-~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPl 322 (396)
.-.+++.+++.+..+||-||.||.+=.- . .|-..+-+- .+ ..-+-++||+=..|.-|-.+..+.. =
T Consensus 183 Rs~ii~~iR~fl~~~gFlEVETP~lq~i--~--GGA~ArPF~--ThhNald~dlyLRIApELyLKRliVGG~-------e 249 (502)
T COG1190 183 RSKIIRAIREFLDDRGFLEVETPMLQPI--P--GGAAARPFI--THHNALDMDLYLRIAPELYLKRLIVGGF-------E 249 (502)
T ss_pred HHHHHHHHHHHHHHCCCeEecccccccc--C--CCcccccce--eeecccCCceEEeeccHHHHHHHHhcCc-------h
Confidence 4568888899999999999999987211 1 121111110 11 1123579998777776666654431 2
Q ss_pred eEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 323 KYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 323 K~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
|++.+|++||+|--.. + .--+||++|.+ ++..-++.++++.+++++.
T Consensus 250 rVfEIgr~FRNEGid~----t---HNPEFTmlE~Y------~AYaDy~D~m~ltE~Li~~ 296 (502)
T COG1190 250 RVFEIGRNFRNEGIDT----T---HNPEFTMLEFY------QAYADYEDLMDLTEELIKE 296 (502)
T ss_pred hheeeccccccCCCcc----c---cCcchhhHHHH------HHHhHHHHHHHHHHHHHHH
Confidence 7999999999995542 1 35599999988 4555567777777777654
No 108
>PLN02788 phenylalanine-tRNA synthetase
Probab=94.36 E-value=0.49 Score=49.02 Aligned_cols=123 Identities=19% Similarity=0.197 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHC---CCEeeec-CCccc-hHHHHhhccCC----CCCCcccEEEeCCceEEecCCCHHH-HHHHhcccc
Q 016049 246 GLINWTLSEVIKR---GFTPLTT-PEIVR-SSVVEKCGFQP----RGANTQVYSIEGADQCLIGTAEIPV-GGIHMDSIL 315 (396)
Q Consensus 246 aLi~~~~d~~~~~---Gy~ei~t-P~lv~-~~~~~~sG~~p----~~~~~q~y~i~~~~l~L~pTaEvpl-~~l~~~~~l 315 (396)
.+++-+.+.+... ||+.+.. |.++. ..-+..-++-+ +.. ...|.+++ +..|+ |.+-+. ..+...
T Consensus 72 ~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~-~DTfy~~~-~~lLR-THTSa~q~~~l~~--- 145 (402)
T PLN02788 72 ILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSY-NDTYYVDA-QTVLR-CHTSAHQAELLRA--- 145 (402)
T ss_pred HHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCc-cceEEecC-Ccccc-CCCcHHHHHHHHh---
Confidence 4555556666665 9999994 44444 33444444322 222 35788854 44554 544443 222222
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccc--------hHHHHHHHHHHHHHHHHHc-CC
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEE--------SDSYHEELIRIEEDLYSSL-GL 385 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~--------S~~~~ee~l~~~e~il~~L-gL 385 (396)
..| +++..|.|||++.--+- ...+|+|+|.+.+.++++ ..-.+..+....+.++..| |+
T Consensus 146 ---~~~-~~~~~g~VyRrD~iD~t-------H~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg~ 213 (402)
T PLN02788 146 ---GHT-HFLVTGDVYRRDSIDAT-------HYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFGD 213 (402)
T ss_pred ---CCC-cEEEEeeEeecCCCCcc-------cCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcCC
Confidence 123 99999999999974321 588999999998854321 1122456777888888888 77
No 109
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=93.75 E-value=0.5 Score=43.73 Aligned_cols=126 Identities=14% Similarity=0.055 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC----CceEEecCCCHHHHHHHhccccCCCCCC
Q 016049 246 GLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG----ADQCLIGTAEIPVGGIHMDSILSESLLP 321 (396)
Q Consensus 246 aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~----~~l~L~pTaEvpl~~l~~~~~l~~~~LP 321 (396)
.+.+-+++.+...||.|+.+..|++.+.....|.. . ....++.+ +.-+|+++.-..+....... ......|
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~---~-~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N-~~~~~~~ 78 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGG---L-DEAVELSNPLSEEYSVLRTSLLPGLLDALARN-LNRKNKP 78 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCC---C-CCeEEEcCCCchhHHHHHHHHHHHHHHHHHHH-hcCCCCC
Confidence 34455677788899999999999999776654321 1 13456654 22355555444454443322 3455689
Q ss_pred ceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cchH------HHHHHHHHHHHHHHHHcCCc
Q 016049 322 LKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EESD------SYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 322 lK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S~------~~~ee~l~~~e~il~~LgLp 386 (396)
++++++|+||..+.. ...|...+=+...... +.++ .-|.++-...+.++..+|++
T Consensus 79 ~~lFEiG~vf~~~~~----------~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~~ 140 (198)
T cd00769 79 LRLFEIGRVFLKDED----------GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGII 140 (198)
T ss_pred EeEEEeEeEEecCCC----------CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCCe
Confidence 999999999965321 0124444433332221 1111 13778999999999999963
No 110
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.64 E-value=0.26 Score=50.59 Aligned_cols=90 Identities=17% Similarity=0.403 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCCCCCC
Q 016049 244 EMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSESLLP 321 (396)
Q Consensus 244 e~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~~LP 321 (396)
.-++..-+++++...||++|.||+||...+=-++ .+|+++ |++-||.-.+.. |-... ||
T Consensus 246 Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGs---------TLFkldYyGEeAyLTQSSQL-----YLEtc-----lp 306 (545)
T KOG0555|consen 246 RAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGS---------TLFKLDYYGEEAYLTQSSQL-----YLETC-----LP 306 (545)
T ss_pred HHHHHHHHHHHHHhcCceecCCCceEEEEecCcc---------eEEeecccCchhhccchhHH-----HHHHh-----hh
Confidence 3456677888889999999999999987754322 366665 455666544432 22211 22
Q ss_pred --ceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE
Q 016049 322 --LKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV 358 (396)
Q Consensus 322 --lK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~ 358 (396)
=..++++..||.|.+-.-| .+-+|+.||...
T Consensus 307 Algdvy~I~~SyRAEkSrTRR------HLsEytHVEaE~ 339 (545)
T KOG0555|consen 307 ALGDVYCIQQSYRAEKSRTRR------HLSEYTHVEAEC 339 (545)
T ss_pred hcCceeEecHhhhhhhhhhhh------hhhhheeeeeec
Confidence 2578999999999874322 477999999875
No 111
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=92.14 E-value=0.096 Score=54.57 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe-CCceEEecCCCHHHHHHHhccccCCCCCC
Q 016049 243 LEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE-GADQCLIGTAEIPVGGIHMDSILSESLLP 321 (396)
Q Consensus 243 Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~-~~~l~L~pTaEvpl~~l~~~~~l~~~~LP 321 (396)
..-.+|.|++.++.++||-+|.||.|-- ..-|-..+-+ -+++-+ +.++||+=.-|.-+-.+.-+..
T Consensus 227 ~RakII~~iRkfld~rgFlEVETPmmn~----iaGGA~AkPF--IT~hndldm~LylRiAPEL~lK~LvVGGl------- 293 (560)
T KOG1885|consen 227 IRAKIISYIRKFLDSRGFLEVETPMMNM----IAGGATAKPF--ITHHNDLDMDLYLRIAPELYLKMLVVGGL------- 293 (560)
T ss_pred HHHHHHHHHHHHhhhcCceEecchhhcc----ccCccccCce--eecccccCcceeeeechHHHHHHHHhccH-------
Confidence 3567999999999999999999998721 1122221111 012211 3468888555554444433331
Q ss_pred ceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 322 LKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 322 lK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
=|+|++|+.||+|-- | +..--|||-+|++ .+.+-++.|+++.|+++..
T Consensus 294 drVYEIGr~FRNEGI----D---lTHNPEFTTcEfY------~AYady~dlm~~TE~l~s~ 341 (560)
T KOG1885|consen 294 DRVYEIGRQFRNEGI----D---LTHNPEFTTCEFY------MAYADYEDLMDMTEELLSG 341 (560)
T ss_pred HHHHHHHHHhhhcCc----c---cccCCCcchHHHH------HHHhhHHHHHHHHHHHHHH
Confidence 278999999999943 2 2356689988877 3444456666666666653
No 112
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.89 E-value=1.8 Score=41.86 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
++-++.++...+..++..++++.+....++++-.+..+..+|..+...+++++..|+.++..+.+++.
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888888887755455444555555555555555555555555544443
No 113
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=91.67 E-value=2.3 Score=45.88 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHH-HhhccCCCCCCcccEEEeC----CceEEecCCCHHHHHHHhccccCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVV-EKCGFQPRGANTQVYSIEG----ADQCLIGTAEIPVGGIHMDSILSESL 319 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~-~~sG~~p~~~~~q~y~i~~----~~l~L~pTaEvpl~~l~~~~~l~~~~ 319 (396)
+.+.+.+++.+...||+|+.+-.|++.+.. +..|..+ +...++.+ +.-+||++.-..+........ ...
T Consensus 365 ~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~----~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~--~~~ 438 (551)
T TIGR00471 365 NKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIED----NNDVKVANPKTLEYTIVRTSLLPGLLETLSENK--HHE 438 (551)
T ss_pred HHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCC----CCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc--cCC
Confidence 456666788889999999999999999654 5555321 12455654 223566555444544433332 457
Q ss_pred CCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEE
Q 016049 320 LPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKL 389 (396)
Q Consensus 320 LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrv 389 (396)
.|+|+|++|.+|...... . .+.++|..+-...... .. -|.++-...+.++..||++|..
T Consensus 439 ~~~~lFEiG~Vf~~~~~~------~-~~e~~~~~l~~~~~g~--~~--df~d~Kg~ve~ll~~l~i~~~~ 497 (551)
T TIGR00471 439 LPQKIFEIGDVVVKDDKS------E-TRSRVVTKLAVGITHS--EA--NFNEIKSIVAALARELGIEYEI 497 (551)
T ss_pred CCeeEEEEEEEEEcCCcc------c-cccceeeEEEEEEECC--CC--CHHHHHHHHHHHHHHcCCceEE
Confidence 899999999999542211 1 1345556554443332 22 2678889999999999996543
No 114
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.62 E-value=1.1 Score=40.63 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHH
Q 016049 99 NLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLT 165 (396)
Q Consensus 99 ~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~ 165 (396)
+.+++-+++.+..+++.++..|+.+.+.+..+++........++|..++.++++++..++..+..+.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888876644333344566777777777777766666654
No 115
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.44 E-value=1.1 Score=47.01 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTH 180 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h 180 (396)
.++..+..+-+.++.|-++|+++.+.+..+|....+. +..++.++..++++++..+...+.++..++.. +..-|+..+
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~-~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~ 150 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQSIDQQIQQAVQS-ETQELTKEIEQLKSERQQLQGLIDQLQRRLAG-VLTGPSGGG 150 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccCCCCC
Confidence 3566667777778888888888888888887654433 24556667777788877777777777776654 333445777
Q ss_pred CCCCCC
Q 016049 181 PDVPVG 186 (396)
Q Consensus 181 ~~vP~g 186 (396)
.|.|+|
T Consensus 151 ~d~P~G 156 (472)
T TIGR03752 151 SDLPVG 156 (472)
T ss_pred CCCCcc
Confidence 888888
No 116
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=90.37 E-value=0.19 Score=51.27 Aligned_cols=66 Identities=26% Similarity=0.385 Sum_probs=44.4
Q ss_pred cccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc-EE
Q 016049 313 SILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH-FK 388 (396)
Q Consensus 313 ~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp-yr 388 (396)
+++...++|+|++++-+|||+|.+. |..-|+..|.-.. +++... -+. +.=-..++.+++.||+. |+
T Consensus 199 ~i~~r~~~PlklFSIDRCFRREQ~E---D~shLmtYhSASC---Vvvde~-vtv---D~GKaVAEglL~qfGFe~F~ 265 (536)
T COG2024 199 EILKREDPPLKLFSIDRCFRREQRE---DASHLMTYHSASC---VVVDED-VTV---DDGKAVAEGLLRQFGFEKFR 265 (536)
T ss_pred HHHhccCCCceeeehhHHhhhhhhc---chhhhhhhccceE---EEEcCc-ccc---cccHHHHHHHHHHhCcccee
Confidence 3556778999999999999999875 5556666655443 333221 111 12236678899999996 54
No 117
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.17 E-value=0.48 Score=48.83 Aligned_cols=94 Identities=16% Similarity=0.308 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCCCC
Q 016049 242 MLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSESL 319 (396)
Q Consensus 242 ~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~~ 319 (396)
++.--+..++++.+..+||.+|.||-|+..+. ... ..+|+++ +..-||.-. | .+|.+..+- .+
T Consensus 229 riq~gvc~~FRe~L~~kgF~EIhTpKli~asS--------EGG-anvF~v~Yfk~~A~LAQS---P--QLyKQMaI~-gd 293 (533)
T KOG0556|consen 229 RIQAGVCFAFREYLRSKGFVEIHTPKLIGASS--------EGG-ANVFRVSYFKQKAYLAQS---P--QLYKQMAIC-GD 293 (533)
T ss_pred ehHHHHHHHHHHHHHhcCcceecccccccccC--------CCC-ceeEEEEeccCcchhhcC---h--HHHHHHHHh-cc
Confidence 44555677888899999999999998864331 111 2478775 344455322 2 234433221 11
Q ss_pred CCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEE
Q 016049 320 LPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMF 357 (396)
Q Consensus 320 LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f 357 (396)
+ -|.+.+|++||.|.+...| .+-+|.-.++.
T Consensus 294 f-~rVyeIGpVfRAEdSnthR------hltEFvGLD~E 324 (533)
T KOG0556|consen 294 F-ERVYEIGPVFRAEDSNTHR------HLTEFVGLDLE 324 (533)
T ss_pred h-hheeeecceeeccccchhh------hhHHhhCcchh
Confidence 1 3899999999999886443 45677764443
No 118
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=86.59 E-value=5.7 Score=41.90 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHH----HCCCEeeec--CCccchHHHHhhccCC----CCCCcccEEEeCCceEEecCCCHHH-HHHHhc
Q 016049 244 EMGLINWTLSEVI----KRGFTPLTT--PEIVRSSVVEKCGFQP----RGANTQVYSIEGADQCLIGTAEIPV-GGIHMD 312 (396)
Q Consensus 244 e~aLi~~~~d~~~----~~Gy~ei~t--P~lv~~~~~~~sG~~p----~~~~~q~y~i~~~~l~L~pTaEvpl-~~l~~~ 312 (396)
...|++++..... .-||+.+.. |..--..-|..-|+-+ +.. ...|.+++ +.+|+ |.+-+. ..++..
T Consensus 48 ~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~-~DT~Yi~~-~~lLR-THTSa~q~~~~~~ 124 (460)
T TIGR00469 48 RDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQK-SDCYYINE-QHLLR-AHTSAHELECFQG 124 (460)
T ss_pred HHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCc-ccceEecC-CceeC-CCCcHHHHHHHHh
Confidence 3455555544321 128988888 8444445565555322 222 35788853 45554 544442 223332
Q ss_pred cccCCCCCCce--EEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC
Q 016049 313 SILSESLLPLK--YAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC 360 (396)
Q Consensus 313 ~~l~~~~LPlK--~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~ 360 (396)
. .. ..-|++ +...|.|||++.--+- ....|+|+|...+-
T Consensus 125 ~-~~-~~~~~~~~~i~~G~VYRrD~iDat-------H~p~FHQ~EG~~v~ 165 (460)
T TIGR00469 125 G-LD-DSDNIKSGFLISADVYRRDEIDKT-------HYPVFHQADGAAIR 165 (460)
T ss_pred c-cc-cCCCcceeeEeecceeeCCCCccc-------cCccceeeEEEEEe
Confidence 2 11 125888 9999999999863211 57899999965543
No 119
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.75 E-value=10 Score=32.89 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
.|..++.+...++.++..|.++|+.++.+|-.... ..++++..+.++..|+.++.+++.+....+.
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~------~~e~~~~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLME------ENEELRALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888888754221 1222344444455555555555555544443
No 120
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=85.23 E-value=1 Score=45.96 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHCCCEeeecCCccchHHHHhh-ccCC-----CCCCcccEEEeC--------------------------
Q 016049 246 GLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC-GFQP-----RGANTQVYSIEG-------------------------- 293 (396)
Q Consensus 246 aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s-G~~p-----~~~~~q~y~i~~-------------------------- 293 (396)
.+..-++..+-+.||+++-|-..|-++.|.-- =++| ++.. +.|-+.+
T Consensus 216 KvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDah-DTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~ygs 294 (483)
T KOG2784|consen 216 KVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAH-DTFFLKDPATSTKFPEDYLERVKAVHEQGGYGS 294 (483)
T ss_pred HHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccc-cceEecChhhcccCCHHHHHHHHHHHhcCCcCC
Confidence 44555667777899999999988888777521 1122 2222 2444321
Q ss_pred ------------CceEEecCCCHHHHH--HHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe
Q 016049 294 ------------ADQCLIGTAEIPVGG--IHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF 359 (396)
Q Consensus 294 ------------~~l~L~pTaEvpl~~--l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f 359 (396)
... +..|.+.++.+ +|+=. ...--|.||+++-++||+|+-.+- .+-+|+|||.++.
T Consensus 295 ~GY~y~wk~eEaqKn-vLRTHTTavSArmLy~LA--k~~f~p~K~FSIDrVFRNEtvDaT-------HLAEFHQVEGvia 364 (483)
T KOG2784|consen 295 IGYRYNWKLEEAQKN-VLRTHTTAVSARMLYRLA--KKGFKPAKYFSIDRVFRNETVDAT-------HLAEFHQVEGVIA 364 (483)
T ss_pred cccCCCCCHHHHHHH-HHhhhhHHhhHHHHHHHH--hCCCCcccccchhhhhhccccchH-------HHHHHhhhceeee
Confidence 012 23354444322 33311 223469999999999999987532 5889999999876
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 360 CQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 360 ~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
...- .+..++.+..+++..+|+.
T Consensus 365 d~gl----tLgdLig~l~~ff~~lg~t 387 (483)
T KOG2784|consen 365 DKGL----TLGDLIGILMEFFTKLGAT 387 (483)
T ss_pred cCCC----cHHHHHHHHHHHHhccCCc
Confidence 4432 2356889999999999973
No 121
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.68 E-value=5.9 Score=37.41 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc--hhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEP--SERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~--~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
+.+-++-++..+++.++++++.+-|+...++..+... ....+|.++-++|++++..+..+...++.++
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655555444332211 1123344444555555555544444444443
No 122
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.80 E-value=11 Score=36.21 Aligned_cols=54 Identities=17% Similarity=0.366 Sum_probs=24.8
Q ss_pred ccchHHHhcCH--HHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016049 74 AIDFKWIRDNK--EAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 74 mlD~~~ir~n~--e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
.+|+..+|+.. ..|+..++.=. -+....++-+.+-+++.+++.+++++.++-+.
T Consensus 102 hiD~elvrkEl~nAlvRAGLktL~---~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~e 157 (290)
T COG4026 102 HIDVELVRKELKNALVRAGLKTLQ---RVPEYMDLKEDYEELKEKLEELQKEKEELLKE 157 (290)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHh---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666422 23333333211 12233344444455555555566555555543
No 123
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=82.79 E-value=10 Score=41.34 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHH-HHhhccCCCCCCcccEEEeC---Cce-EEecCCCHHHHH-HHhccccCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSV-VEKCGFQPRGANTQVYSIEG---ADQ-CLIGTAEIPVGG-IHMDSILSES 318 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~-~~~sG~~p~~~~~q~y~i~~---~~l-~L~pTaEvpl~~-l~~~~~l~~~ 318 (396)
..+.+.+++.+...||+|+.+-.|.+.+. +...+..+. . ....++.+ .++ +||++-=..|.. +..|. . +
T Consensus 400 ~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~-~-~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~--~-~ 474 (597)
T PLN02265 400 NQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDD-G-NSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNK--D-A 474 (597)
T ss_pred HHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCcc-C-CceEEECCCcchhHHHHHHhhHHHHHHHHHHhh--c-C
Confidence 56667778888999999999999999865 665553221 1 12455554 222 444433333433 33333 2 3
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
.+|+|+|++|.+|-..... + .| .++..++=+. +|... + -|.++-...+.++..||++
T Consensus 475 ~~p~klFEiG~V~~~~~~~---~-~~---~~e~~~la~~-~~g~~-~--~f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 475 PKPIKLFEVSDVVLLDESK---D-VG---ARNSRRLAAL-YCGTT-S--GFEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred CCCeeEEEeEeEEecCCcc---c-CC---cchhhEEEEE-EECCC-C--CHhhHHHHHHHHHHHcCCc
Confidence 4599999999999543211 1 11 1233333322 33322 2 2678889999999999994
No 124
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.11 E-value=12 Score=34.87 Aligned_cols=64 Identities=28% Similarity=0.429 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----cCCchhHHHHHHHHHhHHHhHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKG----KLEPSERQKLIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~----~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l 164 (396)
.....+.++...++.+++.++.+...+..++.. ..+..++..+.++..+|+.+++.|++++...
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888899999999888888887753 2234567778888888888877777766643
No 125
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.15 E-value=11 Score=37.09 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
+-++-++...++.+++.|..+...+.+++... .++..++.++++.++.+|+++++.+.+-++-+...+..
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~--~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDEL--QKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666667777776666666655321 12345666777788888888887777766666655544
No 126
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=81.01 E-value=15 Score=33.36 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=26.2
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDV 183 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~v 183 (396)
..+....+++++..++.+...+......+-...+++..|++
T Consensus 103 ~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~l 143 (177)
T PF13870_consen 103 REEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPAL 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Confidence 34445556666666666666666667776667777766554
No 127
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.20 E-value=8.5 Score=37.07 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTH 180 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h 180 (396)
++--.+-.+++.+..+++.|+...+.+.+.+ +.+.++..+|+.++.+++....++.--+...+..|=.++.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v---------~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQV---------ASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555666666666555555544 3455566777777777777777776667777777777778
Q ss_pred CCCCCCCC
Q 016049 181 PDVPVGGE 188 (396)
Q Consensus 181 ~~vP~g~e 188 (396)
.|+|.-.+
T Consensus 120 ~d~Pf~~~ 127 (251)
T PF11932_consen 120 LDLPFLLE 127 (251)
T ss_pred cCCCCChH
Confidence 88887654
No 128
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=79.94 E-value=15 Score=36.18 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=43.0
Q ss_pred cchHHHhcCHHHHHHHHHccCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHh
Q 016049 75 IDFKWIRDNKEAVSANIRNRNSNAN-LELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEG 153 (396)
Q Consensus 75 lD~~~ir~n~e~v~~~l~~R~~~~~-~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~ 153 (396)
+++.|+|...+.+.+..+.+..... ..+.-..+.+......+++.+..+..+..+++ .++.+++.+.+++
T Consensus 166 vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~---------~e~~~~i~e~~~r 236 (269)
T PF05278_consen 166 VKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEV---------KEIKERITEMKGR 236 (269)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 7777888777777766554432111 11122222233333344444444444444433 2344555555566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016049 154 LVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 154 l~~le~~~~~l~~~l~~~ 171 (396)
+.+++.+-..+...+...
T Consensus 237 l~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 237 LGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666655555555544433
No 129
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.82 E-value=25 Score=29.52 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 016049 115 KEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 115 ~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~ 172 (396)
..++....+-.++..++...-+..+...|..++.+++.+++.+++++..++....-++
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555556655556677888999999999999999999988876665444
No 130
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=75.47 E-value=22 Score=32.75 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+..+..+-.+...++.+++.++.+-+..++..... ..++.+.+.++.++++++|+..+.+...+..+...
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~-~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL-LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444333322110 11122344555666666666666666666555544
No 131
>PRK11637 AmiB activator; Provisional
Probab=75.06 E-value=15 Score=38.06 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=18.5
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
..+..++..+..+|..+++++...++.+...+.
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665555544433
No 132
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=74.97 E-value=26 Score=37.98 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTH 180 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h 180 (396)
.++.++..++.+++.++++++....++.+.|-+ .+.+...||.+|.+.+.+++++.+. |-+.
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~---------~q~eL~~Lk~~ieqaq~~~~El~~~---------n~pk 154 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQ---------KQLELSALKGEIEQAQRQLEELRET---------NNPK 154 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------hHHHHHHHHhHHHHHHHHHHHHHhh---------cCCc
Confidence 467777778888888888887777666665522 1223444555554444444444322 2222
Q ss_pred CCCCCC--CCCCceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHH-H
Q 016049 181 PDVPVG--GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVI-K 257 (396)
Q Consensus 181 ~~vP~g--~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~-~ 257 (396)
=..|.. .+..+. . -++++ ...=++-.+.||+.+-+-.||...|.+-.+-...-..+..|+...+. -
T Consensus 155 l~LP~sllP~~~pr---~-l~pp~-------~~~~c~lhncfdySRCsltSgfPVYvyd~D~~~~G~~~d~~lk~~fq~t 223 (907)
T KOG2264|consen 155 LFLPFSLLPLQIPR---E-LEPPS-------QISPCQLHNCFDYSRCSLTSGFPVYVYDSDIITSGQSEDEWLKQVFQET 223 (907)
T ss_pred eeeccccCcccCcc---c-CCCcc-------ccCcccchhccccccccccCCceeEEeccceeecccchHHHHHHHHHHh
Confidence 223332 111100 0 01111 01112223678888888888988776555433322333444443432 2
Q ss_pred CCC--EeeecCC
Q 016049 258 RGF--TPLTTPE 267 (396)
Q Consensus 258 ~Gy--~ei~tP~ 267 (396)
.|+ -.+.+|+
T Consensus 224 ~~~n~~~ve~pd 235 (907)
T KOG2264|consen 224 IPNNVYLVETPD 235 (907)
T ss_pred cccceeEeeCCC
Confidence 333 3444554
No 133
>PHA03386 P10 fibrous body protein; Provisional
Probab=74.29 E-value=16 Score=30.19 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMT 179 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~ 179 (396)
++.|-+++.+.-.+|+++++++..-+.+- .+-++|..+..++..+.+-|+- --||++|
T Consensus 11 r~dIkavd~KVdaLQ~qV~dv~~n~~~LD--------------------a~~~qL~~l~tkV~~Iq~iLn~--d~iPd~P 68 (94)
T PHA03386 11 LDAVQEVDTKVDALQTQLNGLEEDSQPLD--------------------GLPAQLTELDTKVSDIQSILTG--DEVPDPP 68 (94)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcchhhh--------------------hHHHHHHHHHHHHHHHHHhcCc--ccCCCCC
Confidence 36677888888888888888876522211 1123334444555555443332 2388888
Q ss_pred CCCCCCCCC
Q 016049 180 HPDVPVGGE 188 (396)
Q Consensus 180 h~~vP~g~e 188 (396)
.|++|.+.+
T Consensus 69 ~p~~p~~~~ 77 (94)
T PHA03386 69 DPPLPLLPE 77 (94)
T ss_pred CCCCCCCcc
Confidence 888887654
No 134
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=74.26 E-value=16 Score=32.95 Aligned_cols=93 Identities=27% Similarity=0.329 Sum_probs=57.6
Q ss_pred HHHHHHHHccCCcccH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhcc------------CCchhHHHHHHHHHh
Q 016049 85 EAVSANIRNRNSNANL-ELVLELYEKM--LNVQKEVDRLREERNAVANKMKGK------------LEPSERQKLIEEGKN 149 (396)
Q Consensus 85 e~v~~~l~~R~~~~~~-d~v~~l~~~~--r~~~~~~~~lr~~rn~lsk~i~~~------------~~~~~~~~l~~~~~~ 149 (396)
+.|.+-++.-|.+.++ |-+-.|..+. ..+++-++.|-.+-.-+.|.++.. .++++..++-.++.+
T Consensus 4 ~~Il~y~~~qNRPys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~ 83 (169)
T PF07106_consen 4 DAILEYMKEQNRPYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKE 83 (169)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHH
Confidence 4455556666666554 3344454444 456667777766655555554321 123456667777888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCC
Q 016049 150 LKEGLVTLEEDLVKLTDELQQEAQCIPN 177 (396)
Q Consensus 150 lk~~l~~le~~~~~l~~~l~~~~~~lPN 177 (396)
|++++.+++.+...++.++..+...++|
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~ 111 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTN 111 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 8888888888888888888776555443
No 135
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=73.83 E-value=13 Score=33.62 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 016049 109 KMLNVQKEVDRLREERNAVANKMKG 133 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~~ 133 (396)
-+.+++.+++.|+++|-++.+.|+.
T Consensus 12 g~~~L~~EL~~L~~~r~~i~~~i~~ 36 (158)
T PRK05892 12 ARDHLEAELARLRARRDRLAVEVND 36 (158)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4677889999999999999988853
No 136
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=73.49 E-value=17 Score=35.03 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDE 167 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~ 167 (396)
.-+++..++.++..+++++..+.+-+.+..+.+|.-++..++.+++.+|..++.++..++++
T Consensus 130 vT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 130 VTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466677777777777777777666543344444455555666666666666655555443
No 137
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=72.86 E-value=66 Score=28.30 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcC
Q 016049 98 ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCI 175 (396)
Q Consensus 98 ~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~l 175 (396)
.+-++|+.|-+++|.++..--...-+-+.+.++-. . ..+...|.+++..|+.++..+..+++.++...+.+....
T Consensus 44 ~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~e--L-E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 44 LSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHE--L-EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45689999999999998876666666555554321 0 123456788888888888888888888888777766553
No 138
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=72.34 E-value=13 Score=33.58 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 105 ELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 105 ~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
....+.++++.|+.++++|.|.+|.+= +=..-.++.-+..++.+|+++++++...-...++
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qD----eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQD----EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888887531 0011223444455555555555555444433333
No 139
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=71.61 E-value=47 Score=32.22 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCC
Q 016049 108 EKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPN 177 (396)
Q Consensus 108 ~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN 177 (396)
++++.+..+++.++.+.+.+..++.... +..+.+..+...++.++..++..+.++++.+...+..|+-
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~--~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELM--EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665553211 1234455555666666666666666666666665555443
No 140
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.58 E-value=26 Score=38.53 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 108 EKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 108 ~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
.+..++..++..+..+...+++++....+.++.+.+.++..++..++.+++.++..++.++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~ 451 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQL 451 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666667777777777765544444455555555555555555544444444333
No 141
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=71.54 E-value=26 Score=34.92 Aligned_cols=70 Identities=31% Similarity=0.391 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc-----hhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEP-----SERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~-----~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
..+.++-+++.++..++..++++|..++++++...+. +.+.++.++++++|+.-.++...+..+-..+..
T Consensus 20 ~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~ 94 (294)
T COG1340 20 EEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRE 94 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777888888888888888888876543221 223344444444444444444444444444333
No 142
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=70.03 E-value=75 Score=32.42 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 150 LKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 150 lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
.+++|.++++++..++++|..+|+
T Consensus 81 a~~Ei~~~~~~~~~le~~L~~lLl 104 (363)
T COG0216 81 AEEEIKELEAKIEELEEELKILLL 104 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456777777777777777776543
No 143
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.15 E-value=38 Score=29.41 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC--chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 99 NLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE--PSERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 99 ~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~--~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
++..|-.+-++.-.++.++..|+.+.......+..... ......|..++..++.++.+|..+-.-|-++|
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666777777777776666655533221 12234455555555555555555444444443
No 144
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.09 E-value=54 Score=31.57 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 105 ELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 105 ~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
.|.+++.....++.++.+.+|.+...|+. ...+-...++.+..+.+++..+.+++++....
T Consensus 43 ~L~~Er~~h~eeLrqI~~DIn~lE~iIkq---------a~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 43 ELLQERMAHVEELRQINQDINTLENIIKQ---------AESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554433 22233334444555555555555555555444
No 145
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=67.59 E-value=14 Score=40.73 Aligned_cols=135 Identities=11% Similarity=0.056 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC----CceEEecCCCHHHHHHHhccccCCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG----ADQCLIGTAEIPVGGIHMDSILSESLL 320 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~----~~l~L~pTaEvpl~~l~~~~~l~~~~L 320 (396)
..+...+++.+...||+++.|-.|++.+.....+.... +...+.+ +.-+|+.+.=..|....... ..+..
T Consensus 354 ~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~----~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N--~~r~~ 427 (650)
T COG0072 354 QKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLEND----EALELANPISEEYSVLRTSLLPGLLEALSYN--KNRKN 427 (650)
T ss_pred HHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCC----cceEecCCcchhHHHHHHHHHHHHHHHHHHh--hccCC
Confidence 44555677788899999999999999999988765432 1333433 12234433322344333322 34678
Q ss_pred C-ceEEEeccccccCcCCCC--CCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEe
Q 016049 321 P-LKYAAFSHCFRTEAGAAG--TATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLL 391 (396)
Q Consensus 321 P-lK~~~~~~cFR~Eag~~G--~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~ 391 (396)
| ++++++|.+|-.+..... ....|+...... -+. |. +. ...-|..+-...+.+++.||+.|....
T Consensus 428 ~~~~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~--~~~--w~-~~-~~v~f~d~Kg~ve~ll~~lg~~~~~~~ 495 (650)
T COG0072 428 PDVRIFEIGDVFVKDEEAERETRHLAGLAAGLAG--EES--WQ-GK-RPVDFYDAKGDLEALLEALGVEYEFEP 495 (650)
T ss_pred CCeeEEEeeeeEecCCcccchhHHHHHHhhcccc--ccc--cc-cC-CCcCHHHHHHHHHHHHHHhCCceEEEE
Confidence 9 999999999987533210 012233332222 111 11 11 112367788999999999998766543
No 146
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=66.79 E-value=53 Score=25.01 Aligned_cols=57 Identities=28% Similarity=0.398 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc----cCCchh-HHHHHHHHHhHHHhHHHHHHHHH
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKG----KLEPSE-RQKLIEEGKNLKEGLVTLEEDLV 162 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~----~~~~~~-~~~l~~~~~~lk~~l~~le~~~~ 162 (396)
++.+...+.++++.++.+...+.+.+.. .+.|.+ ++.-+.+..++..++..+++.+.
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777776643 122332 23334444444444444444443
No 147
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=66.65 E-value=58 Score=25.20 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=46.7
Q ss_pred HHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cCCchhHHHHHHHHHhHHHhHHHHHHHHH
Q 016049 85 EAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG--KLEPSERQKLIEEGKNLKEGLVTLEEDLV 162 (396)
Q Consensus 85 e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~--~~~~~~~~~l~~~~~~lk~~l~~le~~~~ 162 (396)
......+.......+++.+..+-++.+.+..++...+...+.+...-.. ...+.+...+......|...-..+...+.
T Consensus 18 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 18 QETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455333334577888888888888888888888777777754322 11233344455555555555544444444
Q ss_pred HHHH
Q 016049 163 KLTD 166 (396)
Q Consensus 163 ~l~~ 166 (396)
.-..
T Consensus 98 ~r~~ 101 (105)
T PF00435_consen 98 ERRQ 101 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 148
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=66.31 E-value=16 Score=39.30 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=50.8
Q ss_pred ceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHH
Q 016049 295 DQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIR 374 (396)
Q Consensus 295 ~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~ 374 (396)
.-+|+++....+....+. .+.....|++++++|+|||.+.. + +.. ++..+...... ..+++.. |.++..
T Consensus 183 ~svLRtSLlPGLL~tLs~-Nl~Rg~~piRLFEIGRVFr~d~~--e-E~t---~La~llsGs~W--~~~e~vD--FfDlKG 251 (529)
T PRK06253 183 RLTLRSHMTSGWFITLSS-LLEKRPLPIKLFSIDRCFRREQR--E-DAS---RLMTYHSASCV--IADEDVT--VDDGKA 251 (529)
T ss_pred cCccccchHHHHHHHHHH-HHhCCCCCEEEEEEeeEEecCCc--c-chh---heeEEEEcccc--ccCCCCC--HHHHHH
Confidence 346777766655443222 23457899999999999988642 1 111 23333333221 2233222 678889
Q ss_pred HHHHHHHHcCCc-EEE
Q 016049 375 IEEDLYSSLGLH-FKL 389 (396)
Q Consensus 375 ~~e~il~~LgLp-yrv 389 (396)
.++.++..||+. ++.
T Consensus 252 iLE~LL~~LGI~~i~f 267 (529)
T PRK06253 252 VAEGLLSQFGFTKFKF 267 (529)
T ss_pred HHHHHHHHcCCCeEEE
Confidence 999999999996 443
No 149
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.58 E-value=59 Score=29.63 Aligned_cols=63 Identities=17% Similarity=0.328 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 98 ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 98 ~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
..++.|+..-+.+.+.......++.+...+..++ ..|..+.+.|..++..|++++..++++..
T Consensus 80 ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~---------~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 80 LTLQDVISFLQNLKTTNPSDQALQKENERLKNQN---------ESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred CCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766666554444444444444333322 23333444444444444444444444443
No 150
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.44 E-value=68 Score=25.22 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDE 167 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~ 167 (396)
.|-+-|++-..+..+.+.|....-+.+..|+..... ...+-.+...++.++..++.++..+++.
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~--~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAK--IKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666677777777766666666555432110 1112233444444444444444444443
No 151
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.17 E-value=47 Score=31.36 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
+-.+.-++++++++++++.+.+.++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455555556665555555443
No 152
>PRK11637 AmiB activator; Provisional
Probab=64.14 E-value=36 Score=35.31 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=20.5
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
...+..++..++++|...++.+...-..++.
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777766666555544
No 153
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=63.04 E-value=55 Score=30.22 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
.+..|-++.+++++......++.+.+++.+ ..+++.++..+|+++.+..++.+..+.+
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~L-------t~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSAL-------TTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777777777777776643 2345666666777776666666655543
No 154
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=62.91 E-value=73 Score=32.20 Aligned_cols=70 Identities=31% Similarity=0.434 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----------------cCCchhHHHHHHHHHhHHHhHHHHHHHHHHHH
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKMKG-----------------KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLT 165 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-----------------~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~ 165 (396)
+.+.-++-+.+..+++.|+++.+++...|+- ...+.+++.++.+...++.++..|+.++..+-
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~l 153 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555577777888888877777765431 11235678899999999999999998888777
Q ss_pred HHHHHHH
Q 016049 166 DELQQEA 172 (396)
Q Consensus 166 ~~l~~~~ 172 (396)
++..++.
T Consensus 154 DEkeEl~ 160 (319)
T PF09789_consen 154 DEKEELV 160 (319)
T ss_pred HHHHHHH
Confidence 7666543
No 155
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=62.81 E-value=37 Score=36.19 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
+.+.+|.++.++++.++..++.+++.+.+++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666544
No 156
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.64 E-value=67 Score=30.92 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=14.1
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
..+++++|..+|..||..+.+.+.+.+..
T Consensus 51 h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 51 HVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554444444433
No 157
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=62.55 E-value=40 Score=35.35 Aligned_cols=69 Identities=33% Similarity=0.514 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCc---hhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKMKG-KLEP---SERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-~~~~---~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
+..|.++.++++.+++.+++....+.+.-.. .... .....+.+...++.++++++++++.++++++...
T Consensus 336 ~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 336 LEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555666665554444432111 1111 1234566666777777777777777777776665
No 158
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=62.45 E-value=84 Score=25.56 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---------CchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKMKGKL---------EPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~---------~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
-.+|-++...++.++++=+.-|..+.+.+.... -+....+|+.++..+..+|..||..+..+..++.+
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666667776666677777777654321 13356677777777777777777777777665543
No 159
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=61.27 E-value=65 Score=25.37 Aligned_cols=54 Identities=26% Similarity=0.330 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhhccC------CchhHHHHHHHHHhHHHhHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLRE-ERNAVANKMKGKL------EPSERQKLIEEGKNLKEGLVTLEEDLV 162 (396)
Q Consensus 109 ~~r~~~~~~~~lr~-~rn~lsk~i~~~~------~~~~~~~l~~~~~~lk~~l~~le~~~~ 162 (396)
-+..++.+++.|+. +|-++.+.|+... +..+....+++...+..+|..|+..+.
T Consensus 10 g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~ 70 (74)
T PF03449_consen 10 GYEKLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLA 70 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678889999887 7788888886422 233444555555555555555555443
No 160
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=60.66 E-value=42 Score=26.77 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREE 123 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~ 123 (396)
+.|-+++++.-.++++++++++.
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~ 33 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESN 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666666666666555543
No 161
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.41 E-value=42 Score=30.81 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcC
Q 016049 110 MLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCI 175 (396)
Q Consensus 110 ~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~l 175 (396)
.-.+..++..++++..+..++.+...... .....++.+..+++++++++++.+.+.++..+-.+.
T Consensus 120 ~~~li~~l~~~~~~~~~~~kq~~~~~~~~-~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 120 VHSLIKELIKLEEKLEALKKQAESASEAA-EKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667666666666544322111 111445566677777777777777777766554443
No 162
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=60.37 E-value=54 Score=32.74 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
++.+-+++.+...+...++.+...|+.+.+++.
T Consensus 5 ~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~ 37 (294)
T COG1340 5 LDKLDELELKRKQLKEEIEELKEKRDELRKEAS 37 (294)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777777777777777776654
No 163
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=57.40 E-value=60 Score=36.26 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC----CceEEecCCCHHHHHHHhccccCCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG----ADQCLIGTAEIPVGGIHMDSILSESLL 320 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~----~~l~L~pTaEvpl~~l~~~~~l~~~~L 320 (396)
+.+.+-+++.+...||.|+.|-.|+..+.+ . . ...++.+ +.-+||++.=..+....... ......
T Consensus 401 ~~~~~~ir~~L~~~Gf~Evitysf~s~~~~------~---~-~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N-~~r~~~ 469 (704)
T CHL00192 401 YNTRDKIRSYLRNLGLTELIHYSLVKQESF------S---K-NEIKLKNPLIKDYSTLRSSLLPGLIEAVQEN-LKQGNS 469 (704)
T ss_pred HHHHHHHHHHHHhCCCceEecccccChhhc------C---C-CcEEEeCCCchHHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 455566677888999999999999888642 1 1 2455654 22355554433344432222 244567
Q ss_pred CceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC--ccch------HHHHHHHHHHHHHHHHHcCCcEEE
Q 016049 321 PLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ--PEES------DSYHEELIRIEEDLYSSLGLHFKL 389 (396)
Q Consensus 321 PlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~--pe~S------~~~~ee~l~~~e~il~~LgLpyrv 389 (396)
|+++|++|.||-.... + ..|-..+=....+. ...+ ..-|.++-...+.++..||+++..
T Consensus 470 ~~rlFEiG~Vf~~~~~-------~---~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l~i~~~~ 536 (704)
T CHL00192 470 TLEGFEIGHVFNLDSS-------S---IIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKLNLPIYW 536 (704)
T ss_pred CEeEEEeeeeEcCCCc-------c---ccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHCCCcEEE
Confidence 9999999999943211 1 12222222222221 1011 113778999999999999986443
No 164
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.92 E-value=76 Score=31.81 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 137 PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 137 ~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
..+.+.++++...++.+|....+.+.+++.++..+-.
T Consensus 208 ~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 208 QEELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777666666666666666666655433
No 165
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.87 E-value=80 Score=31.74 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 139 ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 139 ~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+...++++.+....++.....++.++++++..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~ 236 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQE 236 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 166
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=56.53 E-value=64 Score=36.48 Aligned_cols=126 Identities=14% Similarity=0.067 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC----CceEEecCCCHHHHHHHhccccCCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG----ADQCLIGTAEIPVGGIHMDSILSESLL 320 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~----~~l~L~pTaEvpl~~l~~~~~l~~~~L 320 (396)
+.+.+-+++.+...||.|+.|-.|+..+....-|... ...++.+ +.-+||++.=..|....... .....-
T Consensus 490 ~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~~-----~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N-~~~~~~ 563 (791)
T PRK00629 490 QRLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLNP-----EPLLLLNPISEELSVMRTSLLPGLLEAVAYN-LNRGNK 563 (791)
T ss_pred HHHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCCC-----CeEEEeCCCchHHHHHHHhhHHHHHHHHHHH-HhCCCC
Confidence 4455566778889999999999999997776544221 2345554 22345544433344432222 234467
Q ss_pred CceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cchH-----HHHHHHHHHHHHHHHHcCCc
Q 016049 321 PLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EESD-----SYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 321 PlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S~-----~~~ee~l~~~e~il~~LgLp 386 (396)
|+++|++|.||..... ..+|-.++=....... +..| .-|.++-...+.++..||++
T Consensus 564 ~i~lFEiG~Vf~~~~~----------~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l~~~ 625 (791)
T PRK00629 564 DVALFEIGRVFLPDGD----------LPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEALGLP 625 (791)
T ss_pred CEeEEeeeeeeCCCCC----------CCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999954210 0123333322222211 0111 13778889999999999986
No 167
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.10 E-value=74 Score=33.35 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHH
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDL 161 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~ 161 (396)
.|-..+++..+++.++.+++.+.+.+..++.... .+..++..++..+...+..++.+.
T Consensus 53 ~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~--~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETA--DDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455566777777888888888888777765422 233444455555555555555444
No 168
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=55.81 E-value=1.3e+02 Score=27.13 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 139 ERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 139 ~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
|.....+...+++..+..++.....++..+
T Consensus 146 Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 146 DYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566666777777777777766665544
No 169
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.68 E-value=91 Score=32.95 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCC
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPN 177 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN 177 (396)
+.+.-...++.+...++++.+|++++.+++..|-+
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 44444556667777788888899999888876654
No 170
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.38 E-value=85 Score=30.92 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=5.7
Q ss_pred HHHHHhHHHhHHHH
Q 016049 144 IEEGKNLKEGLVTL 157 (396)
Q Consensus 144 ~~~~~~lk~~l~~l 157 (396)
..++..+++.|.+-
T Consensus 86 ~~eI~~~~~~I~~r 99 (265)
T COG3883 86 QKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 171
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.14 E-value=90 Score=31.12 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=58.1
Q ss_pred HHHHHHHccCCc--cc-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHH
Q 016049 86 AVSANIRNRNSN--AN-L-ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDL 161 (396)
Q Consensus 86 ~v~~~l~~R~~~--~~-~-d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~ 161 (396)
.++.-+.-+... .+ + +..-.|+++..++.+-+..|..+.-++++++..... ++-..+..++..+..+...+
T Consensus 103 ~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~-----Els~~L~~l~~~~~~~s~~~ 177 (300)
T KOG2629|consen 103 FVKSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS-----ELSRALASLKNTLVQLSRNI 177 (300)
T ss_pred HHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhH
Confidence 444444444433 23 2 445668888888888888888888888877643211 23333344444444444445
Q ss_pred HHHHHHHH---HHHHcCCCCCCCCCCCC
Q 016049 162 VKLTDELQ---QEAQCIPNMTHPDVPVG 186 (396)
Q Consensus 162 ~~l~~~l~---~~~~~lPN~~h~~vP~g 186 (396)
.+++.+++ .+++..-|++.|.+|..
T Consensus 178 ~k~esei~~Ik~lvln~~~f~~p~~p~~ 205 (300)
T KOG2629|consen 178 EKLESEINTIKQLVLNMSNFAPPVAPSS 205 (300)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCCccc
Confidence 55555443 56888889998888864
No 172
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.78 E-value=1.2e+02 Score=29.10 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.+-+++++...+..++++++.+...+.... +.+.......++++.+|+.++..++....+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~---------~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYN---------EQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777666666542 345555666667777777666666544443
No 173
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=53.63 E-value=1.2e+02 Score=27.83 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~ 172 (396)
..|++.|++..+...++..-+...+.| ..|.++...+..+++.+-..+...+.+|...+
T Consensus 5 ~~L~~~d~~L~~~L~~l~~hq~~~~~I-------------~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 5 EDLIEADDELSSALEELQEHQENQARI-------------QQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555554443333322 23555566666666666666666666666554
No 174
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=53.51 E-value=69 Score=35.23 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=15.2
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 016049 146 EGKNLKEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 146 ~~~~lk~~l~~le~~~~~l~~~l~~~~ 172 (396)
+-.+++.+++.+++++.+.+.++.+.+
T Consensus 263 ~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 263 EREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666666666665554
No 175
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=53.09 E-value=75 Score=35.93 Aligned_cols=124 Identities=17% Similarity=0.142 Sum_probs=72.9
Q ss_pred HHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---Cc-eEEecCCCHHHHHHHhccccCCCCCCceE
Q 016049 249 NWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---AD-QCLIGTAEIPVGGIHMDSILSESLLPLKY 324 (396)
Q Consensus 249 ~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~-l~L~pTaEvpl~~l~~~~~l~~~~LPlK~ 324 (396)
+.+++.+...||.|+.|-.|++.+.+...|+... + ...++.+ .+ -+||++.-..|....... .....-|+++
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~--~-~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N-~~~~~~~~~l 573 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKL--E-NLVEIKNPLSNERSVLRTSLLPSLLEVLAYN-QNRKNKDVKI 573 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCC--C-ceEEEeCCCchHHHHHHHhhHHHHHHHHHHH-HhCCCCCEeE
Confidence 4567778899999999999999977766554321 1 1456654 22 244544333344332221 2344678999
Q ss_pred EEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cchH------HHHHHHHHHHHHHHHHcCCc
Q 016049 325 AAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EESD------SYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 325 ~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S~------~~~ee~l~~~e~il~~LgLp 386 (396)
|++|.||..... + .+|..++=....... +.+| .-|.++-...+.++..||+.
T Consensus 574 FEiG~V~~~~~~-------~---~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 574 FEIGKVFAKDGL-------G---VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred EeeecccCCCCC-------C---cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 999999943210 1 223333322222211 0111 12788999999999999986
No 176
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=52.72 E-value=1.5e+02 Score=25.32 Aligned_cols=16 Identities=6% Similarity=0.264 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 016049 113 VQKEVDRLREERNAVA 128 (396)
Q Consensus 113 ~~~~~~~lr~~rn~ls 128 (396)
+...+..|+++++...
T Consensus 42 L~~~l~~L~~q~~s~~ 57 (107)
T PF09304_consen 42 LRNALQSLQAQNASRN 57 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 177
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=52.62 E-value=22 Score=34.97 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=36.5
Q ss_pred CCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 317 ESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 317 ~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
...-|.+.+++-+|.|.-.|-+|..-.-|.+.|||.- ..=-.|+++ .+++-+-++.|||.
T Consensus 41 Lgpepw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQV---ilKPsP~ni-------q~lYL~SL~~lGId 100 (284)
T PF02091_consen 41 LGPEPWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQV---ILKPSPDNI-------QELYLESLEALGID 100 (284)
T ss_dssp SSSS-EEEEEEEEEE-GGG--TTTSSS--SEEEEEEE---EEES--TTH-------HHHHHHHHHHCT--
T ss_pred cCCCCccccccccCCCCCCCccCCCchHhhhhheeEE---EEcCCCccH-------HHHHHHHHHHhCCC
Confidence 3456999999999999999999987887777777762 111233433 45666777889885
No 178
>PF14282 FlxA: FlxA-like protein
Probab=51.72 E-value=68 Score=26.91 Aligned_cols=61 Identities=11% Similarity=0.262 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 016049 107 YEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 107 ~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~ 172 (396)
+..-..|+.++..|..+.+.|... ...+.+....+.+.|..+|..|+..+..+..+.....
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~-----~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD-----SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555432 0112233445677788888888888888777665554
No 179
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=50.97 E-value=1.2e+02 Score=26.97 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=10.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHH
Q 016049 149 NLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 149 ~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.+...|..||+++...+..+..
T Consensus 77 ~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 4444555555555554444443
No 180
>PLN02943 aminoacyl-tRNA ligase
Probab=50.65 E-value=46 Score=38.52 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~ 133 (396)
++.++.+..+...+.++++.++.+...+.+++..
T Consensus 881 l~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN 914 (958)
T PLN02943 881 LADMVDISAEVERLSKRLSKMQTEYDALAARLSS 914 (958)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556778888888999999999999999888764
No 181
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.09 E-value=76 Score=32.57 Aligned_cols=12 Identities=33% Similarity=0.155 Sum_probs=5.6
Q ss_pred cchHHHhcCHHH
Q 016049 75 IDFKWIRDNKEA 86 (396)
Q Consensus 75 lD~~~ir~n~e~ 86 (396)
-|-+..|.+.|.
T Consensus 213 ~d~kDWR~hleq 224 (359)
T PF10498_consen 213 ADAKDWRSHLEQ 224 (359)
T ss_pred CCcchHHHHHHH
Confidence 344555554443
No 182
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=49.80 E-value=1.4e+02 Score=27.17 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVAN 129 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk 129 (396)
+.+..+....+..++++++...+.+..
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~ 109 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELES 109 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 183
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=49.74 E-value=1.4e+02 Score=24.36 Aligned_cols=44 Identities=34% Similarity=0.453 Sum_probs=31.9
Q ss_pred HHHHhhhhc-cCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 125 NAVANKMKG-KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 125 n~lsk~i~~-~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
..+.+++.. ...++++..+-.+...|++.+...|+++..+..+-
T Consensus 22 e~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 22 EAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 333444433 34567788888999999999999999988886544
No 184
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.63 E-value=1e+02 Score=32.85 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
.+-+.-.+..+++++++.|+.+.+.++++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq 98 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQ 98 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444446677777777777666666553
No 185
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=49.54 E-value=1.3e+02 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 105 ELYEKMLNVQKEVDRLREERNAVA 128 (396)
Q Consensus 105 ~l~~~~r~~~~~~~~lr~~rn~ls 128 (396)
.+.++...+..++..|++....++
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~ 204 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455556666666666555444
No 186
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.44 E-value=1.2e+02 Score=33.38 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
.+.+..++..|..+|.+-+....+|+.++..+
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666676666554
No 187
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.64 E-value=1.1e+02 Score=29.87 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 016049 109 KMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
....+..+++.|++....+.+.|
T Consensus 224 ~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 224 QIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccchhhhhhhH
Confidence 33444444444444444444444
No 188
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.59 E-value=1.3e+02 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=11.6
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 148 KNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 148 ~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
..|+.+...+..+.....+.+..++.
T Consensus 42 ~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 42 EELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 189
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=48.49 E-value=70 Score=29.55 Aligned_cols=88 Identities=24% Similarity=0.286 Sum_probs=35.2
Q ss_pred HHHHHHHHccCCc----ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-----chhHHHHHHHHHhHHHhH
Q 016049 85 EAVSANIRNRNSN----ANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE-----PSERQKLIEEGKNLKEGL 154 (396)
Q Consensus 85 e~v~~~l~~R~~~----~~~-d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~-----~~~~~~l~~~~~~lk~~l 154 (396)
+.+.+..+.|+.. .++ +.+-.++.+.......+..|+++...+..+++.... ....+.+..+...+.-+.
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555532 122 445556666666666666666666666665543211 112344566666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016049 155 VTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 155 ~~le~~~~~l~~~l~~~~ 172 (396)
..+|+.+..++.+-.+++
T Consensus 161 ~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 161 NMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777776666665554
No 190
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=48.15 E-value=1.9e+02 Score=27.05 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 016049 109 KMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
+-+.+...+..++.+...+.++
T Consensus 56 eN~~L~epL~~a~~e~~eL~k~ 77 (201)
T PF13851_consen 56 ENKRLSEPLKKAEEEVEELRKQ 77 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433
No 191
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=48.11 E-value=1.3e+02 Score=23.29 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHH
Q 016049 111 LNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLV 162 (396)
Q Consensus 111 r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~ 162 (396)
+.++..+++...-.+++.-++... .+..+..+..+++..+.+++.++.++.
T Consensus 28 ~~~e~~l~ea~~~l~qMe~E~~~~-p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 28 REIERDLDEAEELLKQMELEVRSL-PPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444555554455555444332 335667777888888888777776654
No 192
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=47.52 E-value=1.7e+02 Score=26.77 Aligned_cols=58 Identities=16% Similarity=0.328 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
+...++-+-..+++.++..|+.+-..++.+|- --+++++.|+.+++.+..+++.+...
T Consensus 104 ~k~~~~l~~L~e~snki~kLe~~~k~L~d~Iv-------------~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 104 QKQLKLLPTLEEISNKIRKLETEVKKLKDNIV-------------TEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc-------------ccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444445555566666666555555441 12445566666666777766665543
No 193
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=47.24 E-value=53 Score=29.59 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhhc
Q 016049 109 KMLNVQKEVDRLRE-ERNAVANKMKG 133 (396)
Q Consensus 109 ~~r~~~~~~~~lr~-~rn~lsk~i~~ 133 (396)
=+..++.+++.|+. +|-++.+.|+.
T Consensus 11 g~~~L~~EL~~L~~~~r~e~~~~i~~ 36 (157)
T PRK01885 11 GYARLKQELDYLWREERPEVTQKVSW 36 (157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35678889999976 78888888764
No 194
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=47.22 E-value=51 Score=38.23 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----CCchh-HHHHHHHHHhHHHhHHHHHHHHHHHH
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMKGK----LEPSE-RQKLIEEGKNLKEGLVTLEEDLVKLT 165 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~----~~~~~-~~~l~~~~~~lk~~l~~le~~~~~l~ 165 (396)
+..++.+..+...++++++.++.+...+.+++... +.+.+ .++-+++..++.++++.+++.+..+.
T Consensus 921 l~~~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 921 LDEFIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888889999999999999988887541 22332 23334444455555555555444443
No 195
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=46.53 E-value=2e+02 Score=25.19 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCccccccchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhc
Q 016049 68 KPQWKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLN-VQKEVDRLREERNAVANKMKG 133 (396)
Q Consensus 68 ~~~~k~mlD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~-~~~~~~~lr~~rn~lsk~i~~ 133 (396)
.|.++..|+....|+ ++ +-+. .|...++.|-.++.+ +..-.+.+-.++|++.+.||.
T Consensus 3 lPilr~~l~~~~~rd-~~-~lek-------lds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKe 60 (131)
T PF10158_consen 3 LPILRGSLNLPDSRD-PE-VLEK-------LDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKE 60 (131)
T ss_pred cccchhhcCCCCCCC-hH-HHHc-------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666676666654 44 2222 344455555555543 344566677777888777753
No 196
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.04 E-value=1e+02 Score=35.83 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=12.3
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
...+.+.|+.++..++.....|.+++++
T Consensus 399 ~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 399 RENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 197
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.01 E-value=1.2e+02 Score=27.57 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=12.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHH
Q 016049 149 NLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 149 ~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
.++++....+.++.+++.++...
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~e 139 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTE 139 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444
No 198
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=45.79 E-value=1.2e+02 Score=27.16 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhccC-CchhHHHHHHHHHhHHHhHHH
Q 016049 113 VQKEVDRLREERNAVANKMKGKL-EPSERQKLIEEGKNLKEGLVT 156 (396)
Q Consensus 113 ~~~~~~~lr~~rn~lsk~i~~~~-~~~~~~~l~~~~~~lk~~l~~ 156 (396)
+..+++.++.+.+...++|+... ...+.+.|..++..++.+.+.
T Consensus 25 ~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 25 VKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 34444444444444445554322 233456677777777766663
No 199
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=45.78 E-value=1.6e+02 Score=23.72 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccC----------------Cchh-HHHHHHHHHhHHHhHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKM---KGKL----------------EPSE-RQKLIEEGKNLKEGLVTLEED 160 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i---~~~~----------------~~~~-~~~l~~~~~~lk~~l~~le~~ 160 (396)
..+..+..++..+..++..+..+.+.+.-.+ .... +.++ .+.|..+...+..+++.+++.
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~ 84 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQ 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777766666655322 1111 1112 345666666677777777777
Q ss_pred HHHHHHHHHHH
Q 016049 161 LVKLTDELQQE 171 (396)
Q Consensus 161 ~~~l~~~l~~~ 171 (396)
...++.++.+.
T Consensus 85 ~~~l~~~l~~~ 95 (106)
T PF01920_consen 85 LKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666666554
No 200
>PHA02562 46 endonuclease subunit; Provisional
Probab=45.50 E-value=85 Score=33.34 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERN 125 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn 125 (396)
+.+-.+.++...++.+++.+.....
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 201
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=45.36 E-value=1.1e+02 Score=27.51 Aligned_cols=56 Identities=27% Similarity=0.283 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 111 LNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 111 r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.+.-.+..+|++|..++.++..+....+|.. +-..++.++.+++++++++.+++..
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFA----kwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFA----KWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888888776666666554 3444666777777777776665544
No 202
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.27 E-value=1.9e+02 Score=26.84 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc--cCCchhHHHHHHHHHhHHHhHHHHHHHH
Q 016049 108 EKMLNVQKEVDRLREERNAVANKMKG--KLEPSERQKLIEEGKNLKEGLVTLEEDL 161 (396)
Q Consensus 108 ~~~r~~~~~~~~lr~~rn~lsk~i~~--~~~~~~~~~l~~~~~~lk~~l~~le~~~ 161 (396)
++|..+..++++|+.+..++.+++.. ..+++..+.++.+....++.+......+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrwTDNI 158 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRWTDNI 158 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 57777888888888888888888763 3455555555555555554444443333
No 203
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=45.22 E-value=2.5e+02 Score=26.87 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNM 178 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~ 178 (396)
.++.......+..+..++..+......+...+..|=.|
T Consensus 122 ~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 122 EELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34455556666666667777777777777777777777
No 204
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=45.13 E-value=32 Score=33.60 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=44.1
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcE
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHF 387 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpy 387 (396)
..-|.+.+++-+|.|.-.|-+|..-.-|.+.+||.- +.+|.-. .+-+++-+-++.|||..
T Consensus 43 gpepw~vAYVqPsrRP~DGRYGeNPNRLq~y~QfQV-----iiKPsP~-----niQelYL~SL~~lGid~ 102 (279)
T cd00733 43 GPEPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQV-----IIKPSPD-----NIQELYLESLEALGINP 102 (279)
T ss_pred CCCcceeccccCCCCCCCCCcCCCchhhhhheeeEE-----EECCCCc-----cHHHHHHHHHHHhCCCc
Confidence 345999999999999999999987787888888862 3454321 23456667778888853
No 205
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.97 E-value=1.5e+02 Score=23.26 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
+.+..++-..++.+|+.+=..+|++-- .+...++.|+..+++++..+..+..++.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el---------~~~~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKEL---------KLNNTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888888887532 1223344555555555555544444443
No 206
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.75 E-value=1.4e+02 Score=30.42 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016049 110 MLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDV 183 (396)
Q Consensus 110 ~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~v 183 (396)
++..+.+++++.++.+.+...=-.. .+..++|.+....|+.++..+.+..+-+.....+.+...-|+...++
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL--~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~ 291 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEEL--NIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDI 291 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH--HhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCc
Confidence 3455666777777766665310000 11234566666677777777777777777777777778888654444
No 207
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=44.19 E-value=1.5e+02 Score=27.73 Aligned_cols=40 Identities=33% Similarity=0.474 Sum_probs=21.7
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPD 182 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~ 182 (396)
..+....+.+.++.....+.+....++-... -=||+-||+
T Consensus 84 ~~~~~~~~~i~~~f~~~~~~~~~~k~~h~~~--LrP~LghP~ 123 (208)
T PF14644_consen 84 QKLCEAMKAIQEEFEQQQKQWEQQKDQHEQQ--LRPNLGHPD 123 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcCCCCC
Confidence 3444555555555555555444444443333 239998876
No 208
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=44.19 E-value=1.6e+02 Score=28.89 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGL 154 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l 154 (396)
+.+.+|.+++..++.++++|..+|+++.++|+..-.+. -+++--+++-.|+=|
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~-Sq~lA~RVqGFkdYL 56 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQ-SQDLAIRVQGFKDYL 56 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-hHHHHHHHhhhHHHH
Confidence 34678899999999999999999999999997644432 123444555555443
No 209
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.65 E-value=1.7e+02 Score=23.46 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcC
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCI 175 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~l 175 (396)
..-+.++..+++.+.+||.....+.++..+.+.+|
T Consensus 35 ~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rL 69 (79)
T PF08581_consen 35 NSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARL 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888899999999998888888777776554
No 210
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=43.35 E-value=69 Score=30.25 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=30.3
Q ss_pred Cccccc--cchHHH-hcCHHHHHHHHHccCCcc------------cHHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 69 PQWKAA--IDFKWI-RDNKEAVSANIRNRNSNA------------NLELVLELYEKMLNVQKEVDRLREE 123 (396)
Q Consensus 69 ~~~k~m--lD~~~i-r~n~e~v~~~l~~R~~~~------------~~d~v~~l~~~~r~~~~~~~~lr~~ 123 (396)
+.|.+. +.+... ..|.+.+-+++.++-... ++++.++..++..++.++++.|+++
T Consensus 128 t~W~~~~~l~~~~~~~~~l~~lY~~l~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~i~~L~kei~~L~~~ 197 (221)
T PF14335_consen 128 TDWKFEDELSLKLPPGLNLDALYESLVNQIIALNAAPNTGEFEKTSLWERIERLEQIEKLEKEIAKLKKK 197 (221)
T ss_pred cCCcchhhccccCcccccHHHHHHHHHHHHhcchhhhhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336554 444433 567788888887774322 4455555555555555555555443
No 211
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=43.32 E-value=1.7e+02 Score=32.22 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc---CCch--hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 016049 110 MLNVQKEVDRLREERNAVANKMKGK---LEPS--ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 110 ~r~~~~~~~~lr~~rn~lsk~i~~~---~~~~--~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~ 172 (396)
...+..+++.|.++..++..++..- .+.+ ...++.++..+++.++.++..+..++++++.+..
T Consensus 565 ~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 565 IARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346666666666666666665431 1111 3566777888888888888888888888776543
No 212
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.18 E-value=1.1e+02 Score=27.58 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHH---HHHhHHHhHHHHHHHHH
Q 016049 100 LELVLELYEKML-NVQKEVDRLREERNAVANKMKGKLEPSERQKLIE---EGKNLKEGLVTLEEDLV 162 (396)
Q Consensus 100 ~d~v~~l~~~~r-~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~---~~~~lk~~l~~le~~~~ 162 (396)
++.|...+..-. ..+.+++.+..+++.+..++... ......|.. ...+|+.+|..|+....
T Consensus 4 i~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~--d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 4 IDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEA--DKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 344444444333 36666777777777777666421 112233333 34456666666666665
No 213
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=42.95 E-value=1.6e+02 Score=28.47 Aligned_cols=91 Identities=14% Similarity=0.310 Sum_probs=55.8
Q ss_pred HHHhcCHHHHHHHHHccCCcccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHH
Q 016049 78 KWIRDNKEAVSANIRNRNSNANL--ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLV 155 (396)
Q Consensus 78 ~~ir~n~e~v~~~l~~R~~~~~~--d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~ 155 (396)
..|..+.+.....++......+. ..+-.++++...+..+++.|..+-+..+...... ..+.+....+++.|...+.
T Consensus 20 ~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l--~~~t~~t~~~a~~L~~~i~ 97 (264)
T PF06008_consen 20 YKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQL--NNNTERTLQRAQDLEQFIQ 97 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666555443 4567778888889999999998888887654221 1123445556666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 016049 156 TLEEDLVKLTDELQQ 170 (396)
Q Consensus 156 ~le~~~~~l~~~l~~ 170 (396)
.+...+.++-+++..
T Consensus 98 ~l~~~i~~l~~~~~~ 112 (264)
T PF06008_consen 98 NLQDNIQELIEQVES 112 (264)
T ss_pred HHHHHHHHHHHHHHH
Confidence 665555555544443
No 214
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.90 E-value=1.4e+02 Score=22.43 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHH
Q 016049 147 GKNLKEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l~~~~ 172 (396)
+..++.++.....+.....+.|+..+
T Consensus 26 v~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 26 VNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444444444444445555554443
No 215
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=42.86 E-value=1.1e+02 Score=29.64 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=26.1
Q ss_pred ccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 133 GKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 133 ~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
++.+.+-.+.+.++..+|..+++.++.+++.+..+++.-.+-
T Consensus 209 g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~~l~ 250 (289)
T COG4985 209 GQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELERQFLY 250 (289)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhceEE
Confidence 344433334466667777777777777777777766654443
No 216
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=42.52 E-value=87 Score=24.90 Aligned_cols=30 Identities=23% Similarity=0.128 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 137 PSERQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 137 ~~~~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
-++.+.+.+....++++|.+||+++..++.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777888889999999999999998875
No 217
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=42.46 E-value=39 Score=33.26 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=43.7
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
..-|.+.+++-+|.|.-.|-+|..-.-|.+.+||.- +.+|.-. .+-+++-+-++.|||.
T Consensus 44 gpepw~vAYVqPsRRP~DGRYGeNPNRLq~yyQfQV-----ilKPsP~-----niQelYL~SL~~lGid 102 (293)
T TIGR00388 44 GPEPWAVAYVEPSRRPTDGRYGENPNRLQHYYQFQV-----VIKPSPD-----NIQELYLDSLRALGID 102 (293)
T ss_pred CCCcceeccccCCCCCCCCCCCCCchhhhheeeeEE-----EECCCCc-----cHHHHHHHHHHHhCCC
Confidence 345999999999999999999987787888888862 3455321 2345666777888985
No 218
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=42.40 E-value=55 Score=26.20 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=23.3
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.+++++-++|.++|..+|.++..+|....+
T Consensus 5 ~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 5 KELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888888888877766
No 219
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=42.40 E-value=43 Score=29.74 Aligned_cols=24 Identities=13% Similarity=0.387 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhhhc
Q 016049 110 MLNVQKEVDRLRE-ERNAVANKMKG 133 (396)
Q Consensus 110 ~r~~~~~~~~lr~-~rn~lsk~i~~ 133 (396)
+..++.+++.|+. +|-++.+.++.
T Consensus 7 ~~~L~~el~~L~~~~r~~~~~~~~~ 31 (151)
T TIGR01462 7 YEKLKEELEYLKTVKRPEISEEIAE 31 (151)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5678889999984 78888887754
No 220
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.00 E-value=1.7e+02 Score=28.02 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=12.8
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
+.++...+++++++...+++..+++...+
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al 184 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDAL 184 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 221
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=41.60 E-value=2.2e+02 Score=25.15 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-CchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKMKGKL-EPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~-~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
|-.|..+...+..+++.+......+........ .....+.|-.++..|-+++...+..+.....++.+
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e 105 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLRE 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333321110 11223456666777777777777777776666654
No 222
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=41.36 E-value=70 Score=28.77 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhhccCC-chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 110 MLNVQKEVDRLR-EERNAVANKMKGKLE-PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 110 ~r~~~~~~~~lr-~~rn~lsk~i~~~~~-~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+..++.+++.|+ .+|-++.+.|+.... ++-.+. ++-..-|++...++..+..+++.|..
T Consensus 10 ~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDlsEN--aeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 10 YEKLKQELNYLWREERPEVTQKVTWAASLGDRSEN--ADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcchh--hhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888899997 578888888764322 110000 11122334445555555555555543
No 223
>PRK11546 zraP zinc resistance protein; Provisional
Probab=41.29 E-value=2.6e+02 Score=24.98 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 016049 110 MLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGG 187 (396)
Q Consensus 110 ~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ 187 (396)
...+..++-..+.|.|++... .+.+.+.+.+| ..||..|..++.+...+++..+... .||-|.
T Consensus 63 t~~LRqqL~aKr~ELnALl~~--~~pD~~kI~aL-------~kEI~~Lr~kL~e~r~~~~~~~~k~------Gv~~g~ 125 (143)
T PRK11546 63 TSALRQQLVSKRYEYNALLTA--NPPDSSKINAV-------AKEMENLRQSLDELRVKRDIAMAEA------GIPRGA 125 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHc------CCCccc
Confidence 344444555555555555321 12222223444 4444455545554444444444442 677663
No 224
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=41.01 E-value=52 Score=37.57 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~ 133 (396)
++.++.+..+...+.++++.++.+...+.+++..
T Consensus 803 l~~~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n 836 (874)
T PRK05729 803 LEGLIDVEAELARLEKELAKLEKEIERVEKKLSN 836 (874)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456677888888999999999999888887754
No 225
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=40.92 E-value=37 Score=33.26 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=43.9
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
..-|.+.+++.+|.|.-.|-+|..-.-|.+.+||.- +.+|.-. .+.+++-+-|+.|||.
T Consensus 47 gpepw~vaYvqPsRRP~DGRYGeNPNRLq~y~QfQV-----ilKPsP~-----niQelYL~SL~~lGid 105 (283)
T PRK09348 47 GPEPWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQV-----ILKPSPD-----NIQELYLGSLEALGID 105 (283)
T ss_pred CCCccccccccCCCCCCCCCcCCCchhhhhheeeEE-----EEcCCCc-----cHHHHHHHHHHHhCCC
Confidence 345999999999999999999987787888888862 3454321 2345666777888885
No 226
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=40.86 E-value=79 Score=32.12 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
+...+++++++++..++.....+++++
T Consensus 31 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ 57 (378)
T TIGR01554 31 AAALEKEELETDVEKLKEEIKLLEDAI 57 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555444444443
No 227
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.35 E-value=1.8e+02 Score=31.11 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=9.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHH
Q 016049 149 NLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 149 ~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.++.++...|+++..+.++...
T Consensus 334 kl~~eie~kEeei~~L~~~~d~ 355 (622)
T COG5185 334 KLKSEIELKEEEIKALQSNIDE 355 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH
Confidence 3444444444444444444433
No 228
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=40.12 E-value=1.9e+02 Score=27.19 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=11.6
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
|.++.+.+..+...|...+..++++-.
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~ 112 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENG 112 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444333
No 229
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.02 E-value=2.5e+02 Score=30.11 Aligned_cols=53 Identities=11% Similarity=0.277 Sum_probs=28.4
Q ss_pred hHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 77 FKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 77 ~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
|+.+++|.|.++.-+.+. +++.+++-....++.++..+++.+..+..++.|.+
T Consensus 346 i~~L~~~~d~L~~q~~kq--~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 346 IKALQSNIDELHKQLRKQ--GISTEQFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHhhHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 444455555555544433 34445555555566666666666655555555544
No 230
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=39.98 E-value=2.5e+02 Score=28.50 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 138 SERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 138 ~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
-|+++|+.|-+-|+++|+.++++..-+...+...=.
T Consensus 189 vDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~ 224 (319)
T PF09789_consen 189 VDIDALIMENRYLKERLKQLQEEKELLKQTINKYKS 224 (319)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999998888777754433
No 231
>PTZ00464 SNF-7-like protein; Provisional
Probab=39.95 E-value=2.9e+02 Score=26.21 Aligned_cols=32 Identities=6% Similarity=0.153 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
|.+..+.++...+.+++..+..+.....+.++
T Consensus 18 d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k 49 (211)
T PTZ00464 18 DASKRIGGRSEVVDARINKIDAELMKLKEQIQ 49 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544443
No 232
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.86 E-value=2.3e+02 Score=28.45 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVA 128 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~ls 128 (396)
..+-+++..++.++.+|++....+.
T Consensus 175 ~~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 175 PKLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4455566667777777776666653
No 233
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=39.72 E-value=2.9e+02 Score=25.60 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=10.3
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHH
Q 016049 148 KNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 148 ~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
..++.++.+++.....+++++..
T Consensus 166 ~~~~~ei~~~~~~~~~~~~~~~~ 188 (236)
T PF09325_consen 166 EQAENEIEEAERRVEQAKDEFEE 188 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 234
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.49 E-value=2.6e+02 Score=24.31 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPD 182 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~ 182 (396)
++|.++...|.-+++.|+.+...+++++.++-..|-...++.
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555555666666666666666666655544444444443
No 235
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.03 E-value=1.8e+02 Score=27.34 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 137 PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 137 ~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
+.+...+.+.+..|.+++..||.-+..-+++|..+
T Consensus 159 ~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 159 GKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777777777777777766666553
No 236
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.99 E-value=1e+02 Score=23.49 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
+..+..+..+++.++++++.+...+.+++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 237
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.96 E-value=1.4e+02 Score=28.64 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=7.1
Q ss_pred CCccccccchHHHhc
Q 016049 68 KPQWKAAIDFKWIRD 82 (396)
Q Consensus 68 ~~~~k~mlD~~~ir~ 82 (396)
.|.|..-+.-+.+|.
T Consensus 82 ~~~a~~~~~~~l~ra 96 (216)
T KOG1962|consen 82 QPLARTHLLEALFRA 96 (216)
T ss_pred chHHHHHHHHHHHHH
Confidence 344444455555554
No 238
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.94 E-value=1.9e+02 Score=22.70 Aligned_cols=53 Identities=30% Similarity=0.417 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 108 EKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 108 ~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
+....++.+++.|+.+.++++. +...|..+...++++-......+..+=.+++
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~---------e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKE---------ENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344455566666665555552 3456777777777777777777776655554
No 239
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.87 E-value=1.7e+02 Score=29.37 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~ 133 (396)
+++-.+-++-..+..+++.|..++.++.+++..
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777777777777777766643
No 240
>PRK15396 murein lipoprotein; Provisional
Probab=38.70 E-value=2.1e+02 Score=22.99 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=7.6
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 016049 152 EGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 152 ~~l~~le~~~~~l~~~l~~ 170 (396)
..+...+++.....+.|+.
T Consensus 53 ~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 53 SDVQAAKDDAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443
No 241
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=38.60 E-value=2.5e+02 Score=23.99 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=16.2
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHH
Q 016049 146 EGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 146 ~~~~lk~~l~~le~~~~~l~~~l 168 (396)
++.+++.++..|+.++..+++++
T Consensus 84 ~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 84 EMDELTERVDALERQVADLENKL 106 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777777765
No 242
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.51 E-value=2.1e+02 Score=29.14 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 105 ELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 105 ~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
++.+..+....+++++.+-.+..++.|
T Consensus 15 ~Lqethr~Y~qKleel~~lQ~~C~ssI 41 (330)
T PF07851_consen 15 ELQETHRSYKQKLEELSKLQDKCSSSI 41 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444
No 243
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.30 E-value=2.6e+02 Score=23.98 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=16.7
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
..+..+...+..+|+.++++...++.++.+.
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666665555555444443
No 244
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.21 E-value=1.7e+02 Score=31.16 Aligned_cols=26 Identities=12% Similarity=0.350 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 107 YEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 107 ~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
.+++++++.+++.++++.+.+..++.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777666554
No 245
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.15 E-value=2.3e+02 Score=27.40 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=7.2
Q ss_pred HHHHHHhHHHhHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEED 160 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~ 160 (396)
+.++++..+.++..++..
T Consensus 91 ieqeik~~q~elEvl~~n 108 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRN 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 246
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.97 E-value=2.2e+02 Score=30.96 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhhhccCCch-------hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016049 116 EVDRLREERNAVANKMKGKLEPS-------ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMT 179 (396)
Q Consensus 116 ~~~~lr~~rn~lsk~i~~~~~~~-------~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~ 179 (396)
++++++.+-+++.+. .-+++. +.++|+.+++..++.++.+..++....+++...+..|-|.|
T Consensus 192 ~~~~yk~~v~~i~~~--~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap 260 (555)
T TIGR03545 192 DLEEYKKRLEAIKKK--DIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAP 260 (555)
T ss_pred hHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 445555555555542 112333 34445555555555566666666665666666666555553
No 247
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=37.70 E-value=2.4e+02 Score=28.25 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVA 128 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~ls 128 (396)
.++.++.++..++..++..++.+..++.
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445444444444443
No 248
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=37.56 E-value=95 Score=24.17 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=23.9
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCC
Q 016049 146 EGKNLKEGLVTLEEDLVKLTDELQQEAQCIPN 177 (396)
Q Consensus 146 ~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN 177 (396)
+.++||.+++.|.....+..-+|+++.-.||+
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaEdLP~ 34 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAEDLPT 34 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 45677777788888888888888888766553
No 249
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.50 E-value=2.2e+02 Score=27.24 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=7.1
Q ss_pred HHHHHHHHHcCCcEE
Q 016049 374 RIEEDLYSSLGLHFK 388 (396)
Q Consensus 374 ~~~e~il~~LgLpyr 388 (396)
..+..+....|++..
T Consensus 266 ~nI~~L~~~q~~~~~ 280 (302)
T PF10186_consen 266 KNIAQLCFSQGIDVP 280 (302)
T ss_pred HHHHHHHHHcCCCCC
Confidence 344444555555543
No 250
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.39 E-value=1.6e+02 Score=29.54 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-----chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVANKMKGKLE-----PSERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~-----~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
-.||++...+.++++-|+-..-.+...+..... ..+.+.++.....|+.++..|..++.+.++-+
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888777776666655533111 11233344444555555555555554444433
No 251
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=37.31 E-value=3.1e+02 Score=29.73 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016049 100 LELVLELYEKMLNVQKE 116 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~ 116 (396)
++.+..+.++...+...
T Consensus 343 ~~~~~~l~~~l~~l~~~ 359 (560)
T PF06160_consen 343 LEIVRELEKQLKELEKR 359 (560)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34343343333333333
No 252
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=37.23 E-value=81 Score=34.53 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=37.2
Q ss_pred cccchHHHhcC------HHHHHHHHHccCCc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016049 73 AAIDFKWIRDN------KEAVSANIRNRNSN---------ANLELVLELYEKMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 73 ~mlD~~~ir~n------~e~v~~~l~~R~~~---------~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
|+=||+.+.++ .=.+...+++|+.+ -.+|.|+.|-.+...++.+-++|..||+++-+.
T Consensus 468 p~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~ 540 (604)
T KOG3863|consen 468 PVDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDST 540 (604)
T ss_pred cHHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655431 12345566777543 137888888888888888888887777776654
No 253
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.14 E-value=4.6e+02 Score=28.70 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHc
Q 016049 152 EGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 152 ~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
+..++++..+.++...++.+.+.
T Consensus 371 ~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 371 DFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555554
No 254
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.91 E-value=1.1e+02 Score=23.36 Aligned_cols=13 Identities=38% Similarity=0.565 Sum_probs=6.1
Q ss_pred HHHHhHHHhHHHH
Q 016049 145 EEGKNLKEGLVTL 157 (396)
Q Consensus 145 ~~~~~lk~~l~~l 157 (396)
++..+|+.+++.+
T Consensus 38 ~e~~~L~~ei~~l 50 (80)
T PF04977_consen 38 KENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444445444
No 255
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=36.86 E-value=3e+02 Score=28.35 Aligned_cols=33 Identities=36% Similarity=0.448 Sum_probs=26.3
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
.|..|++.|++-+..|..++.+.+..+..+...
T Consensus 321 ~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 321 GLIEEVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888877766544
No 256
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=36.82 E-value=1.8e+02 Score=33.60 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHh-ccccCCCCCC-ce
Q 016049 246 GLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHM-DSILSESLLP-LK 323 (396)
Q Consensus 246 aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~-~~~l~~~~LP-lK 323 (396)
.+.+.++++++++|.+.|..-.+++ +-.+ ++++...+=.++-.++. +.. +-| -+
T Consensus 60 eiR~~fl~FF~~~gH~~v~s~pvvp-----------rw~d---------Dllft~Agm~~Fkp~f~~G~~----~pp~~r 115 (902)
T TIGR03683 60 EMREAFLSFFEKHGHTRIKRYPVVA-----------RWRD---------DVYLTIASIADFQPWVTSGLV----PPPANP 115 (902)
T ss_pred HHHHHHHHHHHhCCCEEeCCcCcCc-----------CCCC---------CeeEeecchhhhhHhhcCCCC----CCCCCC
Confidence 4666777888889999887766654 1011 12222222223333332 211 112 36
Q ss_pred EEEeccccccC-cCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 324 YAAFSHCFRTE-AGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 324 ~~~~~~cFR~E-ag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
++...+|.|.. --.-|++. ...--|.|.--|.|..|+.-+-+=+|.+..+.++++.||||
T Consensus 116 ~~~sQkCiR~nDldnVG~t~---rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l~~lgi~ 176 (902)
T TIGR03683 116 LVISQPCIRLNDIDNVGRTG---RHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLEELGID 176 (902)
T ss_pred ceeccccccccccccccCCC---CcchhhhhccceeeCCCCcccCcHHHHHHHHHHHHHHcCCC
Confidence 77788999973 12223222 13445778999999988764445579999999999779996
No 257
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=36.71 E-value=1.3e+02 Score=33.11 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhhccCC--chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Q 016049 115 KEVDRLREERNAVANKMKGKLE--PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGG 187 (396)
Q Consensus 115 ~~~~~lr~~rn~lsk~i~~~~~--~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ 187 (396)
.-+.+|+.+|......+++-.. ......+..++..|+++....-..+.+++..+..+-..+-....|..|.|.
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~p 78 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGP 78 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccc
Confidence 3445566666666655543111 112233444455555555544455555555555544444445566666664
No 258
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.69 E-value=2.6e+02 Score=25.91 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=10.9
Q ss_pred HHhHHHhHHHHHHHHHHHHHHH
Q 016049 147 GKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l 168 (396)
-+..++++..++..-..+.+++
T Consensus 165 ~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 165 EKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444
No 259
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.60 E-value=1.8e+02 Score=31.45 Aligned_cols=20 Identities=10% Similarity=0.516 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 016049 112 NVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 112 ~~~~~~~~lr~~rn~lsk~i 131 (396)
.+..+++.+.++...+...+
T Consensus 352 ~lekeL~~Le~~~~~~~~~i 371 (569)
T PRK04778 352 QLEKQLESLEKQYDEITERI 371 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333
No 260
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=36.46 E-value=2.9e+02 Score=29.16 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc---------------CCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 111 LNVQKEVDRLREERNAVANKMKGK---------------LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 111 r~~~~~~~~lr~~rn~lsk~i~~~---------------~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
..+.+.+++|.+++.-+.+++-+- ..+++.+.+..-+..|+.++..+...+...+.+..
T Consensus 204 N~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888777765210 11233444445555555555555554444443333
No 261
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=36.43 E-value=84 Score=25.13 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTDE 167 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~~ 167 (396)
++.++-..||.+|+.+|+++.+...+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666777777777666665443
No 262
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=36.18 E-value=1.7e+02 Score=33.78 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHh-ccccCCCCCC-ce
Q 016049 246 GLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHM-DSILSESLLP-LK 323 (396)
Q Consensus 246 aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~-~~~l~~~~LP-lK 323 (396)
.+.+.++++++++|.+.|..-.+++ +-.+ ++++...+=.++-.++. +.. +-| -+
T Consensus 63 eiR~~Fl~FF~~~gH~~v~s~pvvp-----------rw~d---------Dllft~Agm~~Fkp~f~~G~~----~pp~~~ 118 (900)
T PRK13902 63 EMREKFLSFFEKHGHTRIERYPVVA-----------RWRD---------DVYLTIASIYDFQPWVTSGLV----PPPANP 118 (900)
T ss_pred HHHHHHHHHHHhCCCEEcCCcCcCC-----------CCCC---------CeeeeecchhhhhHHhcCCCC----CCCCCC
Confidence 4566777888889999887766654 1111 12333222233333333 221 112 36
Q ss_pred EEEeccccccC-cCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH-cCCc
Q 016049 324 YAAFSHCFRTE-AGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS-LGLH 386 (396)
Q Consensus 324 ~~~~~~cFR~E-ag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~-LgLp 386 (396)
++...+|.|.. --.-|++. ...--|.|.-.|.|..|+.-+-+=+|.+..+.+++.+ ||||
T Consensus 119 ~~~sQ~CiR~nDldnVG~t~---rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~ 180 (900)
T PRK13902 119 LVISQPCIRLNDIDNVGRTG---RHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGID 180 (900)
T ss_pred ceecccccchhhhhhccccC---CchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCC
Confidence 78888999973 12223221 1344578899999998876444557899999999987 9997
No 263
>PRK10869 recombination and repair protein; Provisional
Probab=36.06 E-value=1.7e+02 Score=31.63 Aligned_cols=15 Identities=7% Similarity=0.209 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhhh
Q 016049 117 VDRLREERNAVANKM 131 (396)
Q Consensus 117 ~~~lr~~rn~lsk~i 131 (396)
++++-+.++++.+++
T Consensus 319 ~~~~~~~~~~l~~eL 333 (553)
T PRK10869 319 PEELPQHHQQLLEEQ 333 (553)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 264
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.96 E-value=2.8e+02 Score=26.84 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=11.1
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDE 167 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~ 167 (396)
+..+..++.++|+.++.+...+++.
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 265
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.74 E-value=2.5e+02 Score=29.56 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 016049 108 EKMLNVQKEVDRLREE 123 (396)
Q Consensus 108 ~~~r~~~~~~~~lr~~ 123 (396)
.+..++.+++.++.++
T Consensus 66 ~~lk~~e~~i~~~~~q 81 (420)
T COG4942 66 KQLKSLETEIASLEAQ 81 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 266
>PRK03918 chromosome segregation protein; Provisional
Probab=35.72 E-value=2.1e+02 Score=32.34 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=11.4
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
.+.+..+...++.++..++..+..++.++
T Consensus 661 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~i 689 (880)
T PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRR 689 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333333333333
No 267
>KOG2829 consensus E2F-like protein [Transcription]
Probab=35.29 E-value=88 Score=31.22 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=12.0
Q ss_pred CCCCCHHHHhhhcCccc
Q 016049 205 FPVKDHFQLGKALDIFD 221 (396)
Q Consensus 205 f~~~dH~eLg~~l~l~d 221 (396)
|+.-|-.++.+++++-+
T Consensus 220 FevHDD~eILK~m~~~~ 236 (326)
T KOG2829|consen 220 FEVHDDIEILKRMGENC 236 (326)
T ss_pred eeeccHHHHHHHHHhhc
Confidence 55667778888877653
No 268
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.27 E-value=1.2e+02 Score=29.21 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=40.6
Q ss_pred chHHHhcCHHHHHHHHHccCCc-ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-chhHHHHHHHHHhHHH
Q 016049 76 DFKWIRDNKEAVSANIRNRNSN-ANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE-PSERQKLIEEGKNLKE 152 (396)
Q Consensus 76 D~~~ir~n~e~v~~~l~~R~~~-~~~-d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~-~~~~~~l~~~~~~lk~ 152 (396)
.++.+.+....+- .+..|+.. .|+ ++..++..+.+.++.+.++|++-.++-. .+..... ..+...+..++..++.
T Consensus 106 ~~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 106 KFDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEG 183 (262)
T ss_pred HHHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333332 44444443 344 5566666666666666666655444222 1221111 1223445555666666
Q ss_pred hHHHHHHHHH
Q 016049 153 GLVTLEEDLV 162 (396)
Q Consensus 153 ~l~~le~~~~ 162 (396)
+++.|+....
T Consensus 184 ~~~~l~~~v~ 193 (262)
T PF14257_consen 184 QLKYLDDRVD 193 (262)
T ss_pred HHHHHHHhhc
Confidence 6666665543
No 269
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.14 E-value=3.7e+02 Score=25.03 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=15.6
Q ss_pred HHHHccCCcc-----cHHHHHHHHHHHHHHHHHHHHHH
Q 016049 89 ANIRNRNSNA-----NLELVLELYEKMLNVQKEVDRLR 121 (396)
Q Consensus 89 ~~l~~R~~~~-----~~d~v~~l~~~~r~~~~~~~~lr 121 (396)
..+..=|+++ -+++++.+-+.+..+..+...+.
T Consensus 79 ~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le 116 (190)
T PF05266_consen 79 SELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLE 116 (190)
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344445552 24555555555544444444333
No 270
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=34.64 E-value=2.4e+02 Score=22.53 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
.-+.-+.+..+++.|+..-+.+...+. +.+++-.+.-.+-..+..++..+..+.+
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~------~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLP------DVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888888777765431 2233333344444444444444444443
No 271
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=34.39 E-value=26 Score=29.78 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=22.8
Q ss_pred cCCcc-cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 94 RNSNA-NLELV-LELYEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 94 R~~~~-~~d~v-~~l~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
||++. .||.+ -.+...+..+..+...|+.+.+.+..++.
T Consensus 16 rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~ 56 (131)
T PF05103_consen 16 RGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLE 56 (131)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56663 36443 34566666777777777776666665543
No 272
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.24 E-value=1.7e+02 Score=32.00 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=21.1
Q ss_pred ccchHHHhcCH-HHHHHHHHccCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 74 AIDFKWIRDNK-EAVSANIRNRNS-NANLELVLELYEKMLNVQKEVDRLREERNAV 127 (396)
Q Consensus 74 mlD~~~ir~n~-e~v~~~l~~R~~-~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~l 127 (396)
..|.+.|++-. .++.+...+|.. +.++. ++..+..++++.+.+-+.+..++
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~---~~n~kiEelk~~i~~~q~eL~~L 133 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIE---EINTKIEELKRLIPQKQLELSAL 133 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34555555322 344455555532 22333 33333344444444444443333
No 273
>PRK09039 hypothetical protein; Validated
Probab=34.23 E-value=1.9e+02 Score=29.36 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 016049 113 VQKEVDRLREERNAVAN 129 (396)
Q Consensus 113 ~~~~~~~lr~~rn~lsk 129 (396)
++.+++.||++...+..
T Consensus 142 L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 142 LNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 274
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.16 E-value=2e+02 Score=32.29 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcC
Q 016049 139 ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCI 175 (396)
Q Consensus 139 ~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~l 175 (396)
+++.+.+.+..|.++++++.+..+.+..+++..+..+
T Consensus 587 ~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 587 ERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777778777777777777777766544
No 275
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.78 E-value=1.7e+02 Score=21.85 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=5.6
Q ss_pred hHHHhHHHHHHHHHH
Q 016049 149 NLKEGLVTLEEDLVK 163 (396)
Q Consensus 149 ~lk~~l~~le~~~~~ 163 (396)
.|+.++..|+.....
T Consensus 44 ~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 44 ELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 276
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.74 E-value=83 Score=29.58 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016049 111 LNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMT 179 (396)
Q Consensus 111 r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~ 179 (396)
...+.+++.++++..++...+..|.. ++ ..+..+..++.++++.+..++.+|||-+
T Consensus 45 s~k~eel~~~~~eEe~LKs~~q~K~~---------~a----anL~~lr~Ql~emee~~~~llrQLPs~t 100 (211)
T COG3167 45 SGKLEELEELEAEEEELKSTYQQKAI---------QA----ANLEALRAQLAEMEERFDILLRQLPSDT 100 (211)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH---------HH----hchHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 44455666677666666555433211 11 1234455566666777777889999864
No 277
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=33.57 E-value=3.2e+02 Score=28.21 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=29.2
Q ss_pred ccccchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 016049 72 KAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLR 121 (396)
Q Consensus 72 k~mlD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr 121 (396)
+..+|++.+.+-.+.+.+.+.....-.|.+...++-+++..+...++.++
T Consensus 20 ~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~ 69 (364)
T TIGR00020 20 RGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLE 69 (364)
T ss_pred HhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888877777777777665543455555555555544444444443
No 278
>PRK11546 zraP zinc resistance protein; Provisional
Probab=33.53 E-value=2.4e+02 Score=25.21 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 016049 153 GLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 153 ~l~~le~~~~~l~~~l~~~ 171 (396)
.|.+|.+++..|..+|.+.
T Consensus 90 kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 90 KINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666655544
No 279
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=33.49 E-value=2.4e+02 Score=26.03 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
+...+..+++.|+.+...+.+++..+.. ..+..+...++-+|.++.++-...+-+|.
T Consensus 106 eL~s~~~ei~~L~~kI~~L~~~in~~~k----~~~n~~i~slk~EL~d~iKe~e~~emeLy 162 (181)
T PF04645_consen 106 ELKSIKKEIEILRLKISSLQKEINKNKK----KDLNEEIESLKSELNDLIKEREIREMELY 162 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888999888888888754221 11223344555555555555555554543
No 280
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.01 E-value=3.7e+02 Score=24.20 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
++.+..++.++.+++..++.....+...+.
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 147 VEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444433
No 281
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=32.90 E-value=3.4e+02 Score=25.09 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=41.7
Q ss_pred HHHhcCHHHHHHHHHccCCcccH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhc-------cCCchh-
Q 016049 78 KWIRDNKEAVSANIRNRNSNANL------ELVLELYE----KMLNVQKEVDRLREERNAVANKMKG-------KLEPSE- 139 (396)
Q Consensus 78 ~~ir~n~e~v~~~l~~R~~~~~~------d~v~~l~~----~~r~~~~~~~~lr~~rn~lsk~i~~-------~~~~~~- 139 (396)
+.|++-...+..+.-.|+.+.+. ..|.+||. +....+.-++..|...-.|...+-+ ...+++
T Consensus 65 hdir~t~q~l~q~~~~~g~~~~~~~~~~~~sv~~L~~~T~~Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER 144 (179)
T PF14723_consen 65 HDIRDTLQNLSQYPVMRGSDLNADPYSTQRSVRELYSCTVQELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEER 144 (179)
T ss_pred HHHHHHHHHhccccccccccccccccccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHH
Confidence 44444444455556666655321 25677776 4444444444444444444433321 122333
Q ss_pred --HHHHHHHHHhHHHhHHHHHHHHHH
Q 016049 140 --RQKLIEEGKNLKEGLVTLEEDLVK 163 (396)
Q Consensus 140 --~~~l~~~~~~lk~~l~~le~~~~~ 163 (396)
+++|..--..++.++.+||-++.+
T Consensus 145 ~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 145 EEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555455566666666654443
No 282
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=32.88 E-value=3.2e+02 Score=28.21 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=27.6
Q ss_pred ccccchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHH
Q 016049 72 KAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRL 120 (396)
Q Consensus 72 k~mlD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~l 120 (396)
+-.+|+..+.+-.+.+.+.+...+.-.|.+...++..++..+...++.+
T Consensus 20 ~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~ 68 (367)
T PRK00578 20 RGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTL 68 (367)
T ss_pred HhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777777765554345555545444444444433333
No 283
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.63 E-value=1.7e+02 Score=31.93 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-c----hhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE-P----SERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~-~----~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
+-.|++|.++.+++..++.+.++++..+.+......+ + .++-.|+.++++.|-+-..|-.+..+++++-..+--.
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4678889999999999999999998888875433221 2 2344577777777776666667777777777666666
Q ss_pred CCCCCCCCCC
Q 016049 175 IPNMTHPDVP 184 (396)
Q Consensus 175 lPN~~h~~vP 184 (396)
+-|+-...|-
T Consensus 186 Vs~LR~sQVE 195 (772)
T KOG0999|consen 186 VSNLRQSQVE 195 (772)
T ss_pred HHHHhhhhhh
Confidence 6666555553
No 284
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=32.47 E-value=3.6e+02 Score=24.44 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=4.4
Q ss_pred cCHHHHHHHHH
Q 016049 82 DNKEAVSANIR 92 (396)
Q Consensus 82 ~n~e~v~~~l~ 92 (396)
+|.+.+.+++.
T Consensus 34 ~~~~~~~~~~v 44 (177)
T PF07798_consen 34 DSLEKVAQDLV 44 (177)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 285
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.44 E-value=1.6e+02 Score=27.18 Aligned_cols=27 Identities=33% Similarity=0.272 Sum_probs=13.4
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
...|..+...+.+++..++++-.+|=+
T Consensus 153 ~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 153 LQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555444433
No 286
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.27 E-value=3.6e+02 Score=31.29 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
.++|+.....|+.++..+|..+..++++++
T Consensus 412 ~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 412 LEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555554
No 287
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=31.98 E-value=2.2e+02 Score=26.79 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=13.6
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
...+...|..+-.+...++..+..++..
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv~~ 179 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQVRQ 179 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554444445555555544444
No 288
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.23 E-value=3.5e+02 Score=23.48 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=23.7
Q ss_pred cccccchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 71 WKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 71 ~k~mlD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
--..+|+..+..+-...++.. -.+.++....+.+++.++.+-+...+++.
T Consensus 18 kIa~Vd~~~v~~~~~~~k~~~------------~~l~~~~~~~~~~l~~~~~el~~~~~~l~ 67 (158)
T PF03938_consen 18 KIAVVDVDKVFQESPAGKDAQ------------AKLQEKFKALQKELQAKQKELQKLQQKLQ 67 (158)
T ss_dssp CEEEE-HHHHHHHHHHHHTHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cEEEeeHHHHHHhCHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578877776544433321 12333444445555555555555544443
No 289
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=31.04 E-value=4.7e+02 Score=32.65 Aligned_cols=90 Identities=24% Similarity=0.340 Sum_probs=0.0
Q ss_pred hHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------------------
Q 016049 77 FKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMK------------------------ 132 (396)
Q Consensus 77 ~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~------------------------ 132 (396)
++.|+++--.+++... .+...+-++.++..++..++..|+.+.+++..++.
T Consensus 1224 vNll~EsN~~LRee~~-----~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~ 1298 (1822)
T KOG4674|consen 1224 VNLLRESNKVLREENE-----ANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLL 1298 (1822)
T ss_pred HHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---ccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 133 ---GKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 133 ---~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
...++.+...|..++..|++++...+....++..++.+.
T Consensus 1299 ~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~ 1340 (1822)
T KOG4674|consen 1299 EKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRL 1340 (1822)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 290
>PRK12704 phosphodiesterase; Provisional
Probab=31.00 E-value=1.8e+02 Score=31.37 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=22.9
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016049 147 GKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDV 183 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~v 183 (396)
....++++.+.++++.++..+....+..+-+++.+..
T Consensus 119 Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea 155 (520)
T PRK12704 119 LEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA 155 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3444455555556666666666677777777776543
No 291
>PRK02224 chromosome segregation protein; Provisional
Probab=31.00 E-value=2.4e+02 Score=31.87 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 016049 111 LNVQKEVDRLREER 124 (396)
Q Consensus 111 r~~~~~~~~lr~~r 124 (396)
..++.++..++.+.
T Consensus 209 ~~~~~~l~el~~~i 222 (880)
T PRK02224 209 NGLESELAELDEEI 222 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 292
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.86 E-value=2.1e+02 Score=27.21 Aligned_cols=35 Identities=9% Similarity=0.300 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKGKLEPSER 140 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~ 140 (396)
+.++.|.+..++..++.+.+++.+.||......|.
T Consensus 23 iRke~r~ldrqir~iqree~kv~~~iK~aAKknD~ 57 (227)
T KOG3229|consen 23 IRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDK 57 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 45567888899999999999999999874433333
No 293
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.81 E-value=3.2e+02 Score=22.79 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
..+..+...+...++.++++...++.++.+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444443
No 294
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.78 E-value=2.6e+02 Score=23.64 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=5.0
Q ss_pred HHHhHHHHHHHHHH
Q 016049 150 LKEGLVTLEEDLVK 163 (396)
Q Consensus 150 lk~~l~~le~~~~~ 163 (396)
|..++.++++.+..
T Consensus 92 l~~~~~~l~~~~~~ 105 (118)
T cd04776 92 LEQQRRDIDAALAE 105 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 295
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=30.75 E-value=5.3e+02 Score=27.81 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhhhccCC-chhHHHHHHHHHhHHHhHHHHHHH
Q 016049 116 EVDRLREERNAVANKMKGKLE-PSERQKLIEEGKNLKEGLVTLEED 160 (396)
Q Consensus 116 ~~~~lr~~rn~lsk~i~~~~~-~~~~~~l~~~~~~lk~~l~~le~~ 160 (396)
.++++...+.++.+++..... .++.+.+.++..++++++..+-.+
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~ 368 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVA 368 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666654332 233455555555555555544433
No 296
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.66 E-value=2.9e+02 Score=31.49 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----Cc-------hhHHHHHHHHHhHHHhHHHHHHHHHHH
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKMKGKL-----EP-------SERQKLIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~-----~~-------~~~~~l~~~~~~lk~~l~~le~~~~~l 164 (396)
++.+..+...++.+++.|+-...+|+.++-.-. .. ..++-.+.++.+|+.+|+++.+.+..+
T Consensus 432 iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455556677777888877777776653210 00 112234555566666666665554443
No 297
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=30.65 E-value=3e+02 Score=28.66 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH--HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSER--QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTH 180 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~--~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h 180 (396)
+-++.++......++--.+.+.....+++.. ++++. ..+.. =...++.++.++.+++.++-+.+..-.+.-.
T Consensus 4 ~~elq~e~~~~E~qL~~a~qkl~da~~~~e~--dpD~~nk~~~~~----R~~~v~~~~~Ki~elkr~lAd~v~~~k~~~~ 77 (428)
T PF00846_consen 4 LEELQEEITQHEQQLVIARQKLKDAEKQYEK--DPDDVNKSTLQQ----RQSVVSALQDKIAELKRQLADRVAAGKQSAK 77 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 3444455555555555444444444444322 33332 22322 2344556666666666666666666677767
Q ss_pred CCCCCCCCCCc
Q 016049 181 PDVPVGGEDCS 191 (396)
Q Consensus 181 ~~vP~g~ee~~ 191 (396)
+.-|-|-|+++
T Consensus 78 ~~dptG~epdD 88 (428)
T PF00846_consen 78 PVDPTGVEPDD 88 (428)
T ss_dssp -----------
T ss_pred CCCCCCCCCch
Confidence 77788866543
No 298
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.48 E-value=3.7e+02 Score=23.49 Aligned_cols=31 Identities=6% Similarity=0.205 Sum_probs=16.9
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
..++......++.++..+......++.++.+
T Consensus 91 V~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 91 VTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555543
No 299
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.42 E-value=2e+02 Score=29.79 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=15.0
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDE 167 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~ 167 (396)
...+.+++.+++..+++++.++++-
T Consensus 271 ~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 271 KKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666543
No 300
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.22 E-value=3.1e+02 Score=22.55 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
..|..+...+..+++.+++++..++.++.++-.
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666555433
No 301
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=30.07 E-value=4e+02 Score=24.42 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCchhHHHH-HHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 113 VQKEVDRLREERNAVANKMKGKLEPSERQKL-IEEGKNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 113 ~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l-~~~~~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
+.+.+++|+..-.++.+...... .+-.+.| .+.+..+.+.|.++..+..++...+..++.
T Consensus 46 itk~veeLe~~~~q~~~~~s~~~-~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~~ 106 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDLY-EEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQELLL 106 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55556666665555544332110 1112334 355677888888888888888888876654
No 302
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=29.99 E-value=2.3e+02 Score=28.95 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 108 EKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 108 ~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
.+|+.+..+.+.|.++++.+.+.++. .++....|...|+.+.+....+++
T Consensus 101 ~~Rk~L~~~~~el~~~k~~l~~~~~~---------k~~~L~~l~~~L~~l~~a~~plq~ 150 (355)
T PF09766_consen 101 EQRKRLEEQLKELEQRKKKLQQENKK---------KKKFLDSLPPQLKSLKKAAKPLQE 150 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45666777777777777777665532 223344555555555555555543
No 303
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.98 E-value=1.7e+02 Score=31.19 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=15.6
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 145 EEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 145 ~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.+...+..+|++++.+...|++++..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44445556666666666666666643
No 304
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.98 E-value=2.4e+02 Score=33.85 Aligned_cols=9 Identities=11% Similarity=0.349 Sum_probs=5.1
Q ss_pred eeEEEeCCc
Q 016049 354 LEMFVFCQP 362 (396)
Q Consensus 354 vE~f~f~~p 362 (396)
..+.++..|
T Consensus 1224 ~~il~lDEP 1232 (1311)
T TIGR00606 1224 CGIIALDEP 1232 (1311)
T ss_pred CCEEEeeCC
Confidence 455666555
No 305
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=29.74 E-value=1.2e+02 Score=26.67 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 016049 88 SANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDE 167 (396)
Q Consensus 88 ~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~ 167 (396)
+.-|++||+..+- +-+-..+-++|.+++..+..++ +.|.++...+.-++..++.....+..-
T Consensus 56 RRTLKNRGYA~sC---------R~KRv~Qk~eLE~~k~~L~qqv---------~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 56 RRTLKNRGYAQSC---------RVKRVQQKHELEKEKAELQQQV---------EKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHhhhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777765431 1111122334444444444443 344555555666666666666555444
Q ss_pred HH
Q 016049 168 LQ 169 (396)
Q Consensus 168 l~ 169 (396)
..
T Consensus 118 ~~ 119 (135)
T KOG4196|consen 118 AV 119 (135)
T ss_pred hh
Confidence 33
No 306
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=29.69 E-value=87 Score=28.69 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=5.9
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 139 ERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 139 ~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
+++.|+.+.+.||+|+.+|+.++ .+.+++
T Consensus 25 EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 45667777777777777777766 554444
No 307
>smart00338 BRLZ basic region leucin zipper.
Probab=29.55 E-value=1.7e+02 Score=21.89 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=5.4
Q ss_pred HHHhHHHHHHHHHHH
Q 016049 150 LKEGLVTLEEDLVKL 164 (396)
Q Consensus 150 lk~~l~~le~~~~~l 164 (396)
|..+...|..++..+
T Consensus 38 L~~en~~L~~~~~~l 52 (65)
T smart00338 38 LEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 308
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.53 E-value=3e+02 Score=29.38 Aligned_cols=80 Identities=14% Similarity=0.205 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC---C--chhH-HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKL---E--PSER-QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~---~--~~~~-~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
|-|..|--+.+++..+++.|.++-+.+.++-.... . .... +++..+-.++.++..+|+.++.++...+.++..+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666666666555555544332211 1 1112 3344556677888888888888898888888888
Q ss_pred CCCCCC
Q 016049 175 IPNMTH 180 (396)
Q Consensus 175 lPN~~h 180 (396)
|-++..
T Consensus 139 l~~~~~ 144 (472)
T TIGR03752 139 LAGVLT 144 (472)
T ss_pred Hhhccc
Confidence 876543
No 309
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.37 E-value=2e+02 Score=28.13 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
.+.+..|-++|..+..+++.|+++...-.+++.
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~ 211 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLE 211 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777778888888888777766666654
No 310
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.08 E-value=3.3e+02 Score=32.44 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 98 ANLELVLELYEKMLNVQKEVDRLREERNAVA 128 (396)
Q Consensus 98 ~~~d~v~~l~~~~r~~~~~~~~lr~~rn~ls 128 (396)
+|.+.|..+.++...+..++..+...+..+.
T Consensus 768 vD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~ 798 (1201)
T PF12128_consen 768 VDPERIQQLKQEIEQLEKELKRIEERRAEVI 798 (1201)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455666666666667666666666666665
No 311
>PLN02381 valyl-tRNA synthetase
Probab=28.90 E-value=1.5e+02 Score=34.92 Aligned_cols=33 Identities=9% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKG 133 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~ 133 (396)
..++.+..+...+.++++.++.+...+.+++..
T Consensus 990 ~~~iD~~~E~~rL~K~l~klekei~~~~~kLsN 1022 (1066)
T PLN02381 990 QGAVNAEAELEKLRNKMDEIQKQQEKLEKKMNA 1022 (1066)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 445667788888888888888888888887754
No 312
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=28.89 E-value=2e+02 Score=30.93 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=21.5
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016049 147 GKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDV 183 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~v 183 (396)
....++++.++++++..+..+....|..+-+++.+..
T Consensus 113 L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ea 149 (514)
T TIGR03319 113 LSNKEKNLDEKEEELEELIAEQREELERISGLTQEEA 149 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 3344445555555555555666666777777766543
No 313
>PLN02452 phosphoserine transaminase
Probab=28.87 E-value=3.9e+02 Score=27.25 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=63.3
Q ss_pred HHHHHHHHhHHHh--HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCCCHHHHhhhcC
Q 016049 141 QKLIEEGKNLKEG--LVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALD 218 (396)
Q Consensus 141 ~~l~~~~~~lk~~--l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~ 218 (396)
-.+.+-.+.|+++ +....+...++.+.+.+.+..++++-.+ |+..+.....+-.+.-+.. + ....-.+.+++.|
T Consensus 249 ~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~--~~~~~~rs~~~vsF~~~~~-~-~~~~f~~~~~~~g 324 (365)
T PLN02452 249 YMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVC--PVEKSVRSLMNVPFTLGGS-E-LEAEFVKEAAKAG 324 (365)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccC--CCChHHhCCeEEEEEcCCc-h-hHHHHHHHHHHCC
Confidence 3455555556553 7777888888888888888888877222 2221212222222321111 1 1123456677889
Q ss_pred ccccccccccCCcceeec---chHHHHHHHHHHHHHHHHHHH
Q 016049 219 IFDFDAAAEVSGSKFYYL---KNEAVMLEMGLINWTLSEVIK 257 (396)
Q Consensus 219 l~df~~~akvsG~rf~~l---~g~~a~Le~aLi~~~~d~~~~ 257 (396)
++.+.-...+.|.|--.+ +-+++ ++|++||.++..+
T Consensus 325 ~~~~~G~r~~gg~R~s~yna~~~~~v---~~L~~~m~~f~~~ 363 (365)
T PLN02452 325 MVQLKGHRSVGGMRASIYNAMPLAGV---EKLVAFMKDFQAK 363 (365)
T ss_pred CcccCCccccCceEEECcCCCCHHHH---HHHHHHHHHHHHh
Confidence 998765555677664333 33333 6889988887654
No 314
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=28.69 E-value=3.5e+02 Score=23.50 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=38.1
Q ss_pred cchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhH
Q 016049 75 IDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGL 154 (396)
Q Consensus 75 lD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l 154 (396)
=++..+.+|++.+..-+. .++.+..+.... +.+.++--.+++..- ....+.+.++.++...-+++
T Consensus 7 ~eL~~Ll~d~~~l~~~v~------~l~~~~~~~~~~-------~~l~~~n~~lAe~nL--~~~~~l~~~r~~l~~~~~~~ 71 (150)
T PF07200_consen 7 EELQELLSDEEKLDAFVK------SLPQVQELQQER-------EELLAENEELAEQNL--SLEPELEELRSQLQELYEEL 71 (150)
T ss_dssp HHHHHHHHH-HHHHHHGG------GGS--HHHHHHH-------HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHH------cCHHHHHHHHHH-------HHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHH
Confidence 356666677766655322 233333333333 333333333333211 11123455566666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016049 155 VTLEEDLVKLTDELQQE 171 (396)
Q Consensus 155 ~~le~~~~~l~~~l~~~ 171 (396)
+.++.+...++.++..+
T Consensus 72 ~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 72 KELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666655554
No 315
>PRK11020 hypothetical protein; Provisional
Probab=28.61 E-value=3.9e+02 Score=23.10 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDV 183 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~v 183 (396)
.++..+...|..+|..+.... ..++......|-++|...+
T Consensus 34 ~qf~~E~~~l~k~I~~lk~~~---~~~lske~~~l~~lpF~R~ 73 (118)
T PRK11020 34 AQFEKEKATLEAEIARLKEVQ---SQKLSKEAQKLMKLPFSRA 73 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCcchh
Confidence 334444444444444443322 2344555666666666543
No 316
>PRK05589 peptide chain release factor 2; Provisional
Probab=28.45 E-value=4e+02 Score=27.04 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=20.6
Q ss_pred hcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 016049 81 RDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLR 121 (396)
Q Consensus 81 r~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr 121 (396)
-+|++..++-.+.. .++..+++.+++++....++..+.
T Consensus 7 w~d~~~~~~~~ke~---~~l~~~v~~~~~~~~~~~~~~~~~ 44 (325)
T PRK05589 7 WNDIKEAQEITSEE---KYLKDKLDKYNHLRNRIEDIEVLC 44 (325)
T ss_pred hcCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555544322 345566666666666655555544
No 317
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=28.42 E-value=2.5e+02 Score=29.82 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 113 VQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 113 ~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
++..+++|+++...+...+.......+-+++..+...+..++..|++.+.-++.-+.+
T Consensus 168 ~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~ 225 (475)
T PF10359_consen 168 IQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLED 225 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444332111122234444555555555555555555544443
No 318
>PHA01750 hypothetical protein
Probab=28.23 E-value=1.1e+02 Score=23.88 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=8.4
Q ss_pred HHHHHHhHHHhHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l 164 (396)
|+.+..+++.++.+++++..++
T Consensus 47 L~~ei~~~kikqDnl~~qv~ei 68 (75)
T PHA01750 47 LKTEIEELKIKQDELSRQVEEI 68 (75)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333333333333333333
No 319
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=28.21 E-value=5.2e+02 Score=24.43 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCC--CCCCCC
Q 016049 156 TLEEDLVKLTDELQQEAQCIPNMTHP--DVPVGG 187 (396)
Q Consensus 156 ~le~~~~~l~~~l~~~~~~lPN~~h~--~vP~g~ 187 (396)
++.+++..++.++... ..+|+.|.. ++|.+.
T Consensus 153 di~~EldaLese~~~e-~e~PevPs~ep~lPek~ 185 (209)
T KOG2910|consen 153 DILAELDALESELEVE-AELPEVPSTEPELPEKE 185 (209)
T ss_pred HHHHHHHHHHHHhhhh-hhcCCCCCCCCCccccc
Confidence 3445555565555544 778999887 555553
No 320
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=28.21 E-value=4e+02 Score=23.18 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred HHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016049 85 EAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVAN 129 (396)
Q Consensus 85 e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk 129 (396)
+.....+.......|+..+-.+-++...+..+++......+.+..
T Consensus 17 ~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~ 61 (213)
T cd00176 17 SEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNE 61 (213)
T ss_pred HHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 334445555554446777777777777777776655555555543
No 321
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=28.14 E-value=5.2e+02 Score=24.68 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVA 128 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~ls 128 (396)
.++-.+.+++..++++...+-..|.
T Consensus 134 ~el~~ek~kL~~q~~e~~e~lr~L~ 158 (221)
T PF10376_consen 134 QELEEEKRKLEKQVDEKEEELRRLK 158 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444455555566555544444443
No 322
>PRK01156 chromosome segregation protein; Provisional
Probab=27.97 E-value=3e+02 Score=31.31 Aligned_cols=44 Identities=11% Similarity=0.235 Sum_probs=20.9
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCCCCC
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNM-THPDVPVG 186 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~-~h~~vP~g 186 (396)
+..+..+|..++.+++....++...+.++--.+.++ ..|-.|+-
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c 458 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVC 458 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 333445555556666666665555544433222221 24555554
No 323
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=27.89 E-value=1.1e+02 Score=23.30 Aligned_cols=35 Identities=31% Similarity=0.213 Sum_probs=20.1
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 016049 144 IEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNM 178 (396)
Q Consensus 144 ~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~ 178 (396)
.+++..||++|++|++...+++.+-.-+=...|.-
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~pe 47 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNASPE 47 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34455666667777776666666555444444433
No 324
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.87 E-value=4.8e+02 Score=24.74 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHH
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLT 165 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~ 165 (396)
++.+--++..++.+|-++.-++..+|+....+.....+++++-.+=.+-+.+|.+...|.
T Consensus 24 v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~ 83 (218)
T KOG1655|consen 24 VNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLD 83 (218)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444445554444444444455554444344444554444443
No 325
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.82 E-value=4.6e+02 Score=24.47 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 016049 112 NVQKEVDRLRE 122 (396)
Q Consensus 112 ~~~~~~~~lr~ 122 (396)
+++.+++.|+.
T Consensus 66 ~a~~e~~eL~k 76 (201)
T PF13851_consen 66 KAEEEVEELRK 76 (201)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 326
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.38 E-value=4.3e+02 Score=24.95 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
-.+.++...++.+++.+..+|+.-....+
T Consensus 146 ~~le~~l~~~k~~ie~vN~~RK~~Q~~~~ 174 (221)
T PF05700_consen 146 KRLEKELAKLKKEIEEVNRERKRRQEEAG 174 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555566677777777777776665543
No 327
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.23 E-value=4.8e+02 Score=28.56 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=8.4
Q ss_pred HHHHHHhHHHhHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVK 163 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~ 163 (396)
|..++..+..++..+.+++++
T Consensus 344 l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444333333
No 328
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=27.14 E-value=1.5e+02 Score=31.23 Aligned_cols=25 Identities=8% Similarity=0.319 Sum_probs=15.9
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 145 EEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 145 ~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
+++.+++++|....-+.+.+++..+
T Consensus 83 d~~~~~~qqiAn~~lKv~~l~da~~ 107 (514)
T PF11336_consen 83 DDATEMRQQIANAQLKVESLEDAAE 107 (514)
T ss_pred HHHHHHHHHHHhhhhhHHHHhhHHh
Confidence 4456666777776666666666554
No 329
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.04 E-value=4.6e+02 Score=28.74 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=38.5
Q ss_pred hHHHhcCHHHHHHHHHccCCc--ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHh
Q 016049 77 FKWIRDNKEAVSANIRNRNSN--ANL-ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEG 153 (396)
Q Consensus 77 ~~~ir~n~e~v~~~l~~R~~~--~~~-d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~ 153 (396)
+..+.+..+.++|+-..|... ..+ ..+-.+..+..+..+++..++.+|..+++ ....|.++
T Consensus 561 ~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e----------------~a~~La~R 624 (741)
T KOG4460|consen 561 LQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLRE----------------MAERLADR 624 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 444555556666666555321 111 12233333334444455555555555543 23344455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016049 154 LVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 154 l~~le~~~~~l~~~l~~~~~ 173 (396)
+.+..+..+.++..++.++.
T Consensus 625 ~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 625 YEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHhHHHHHHHHHHHHh
Confidence 55555555556655555443
No 330
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.99 E-value=4.1e+02 Score=31.03 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=25.0
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 016049 146 EGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGE 188 (396)
Q Consensus 146 ~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~e 188 (396)
+...++.+-....+.+......+.+.--.+++...+.-|++.+
T Consensus 326 ~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~ 368 (1072)
T KOG0979|consen 326 KLESLKKAAEKRQKRIEKAKKMILDAQAELQETEDPENPVEED 368 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhH
Confidence 3333443333344444555555666666788887777787754
No 331
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=26.77 E-value=8.9e+02 Score=26.68 Aligned_cols=117 Identities=17% Similarity=0.233 Sum_probs=60.1
Q ss_pred ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhc------cCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 98 ANLELVLELYEK-MLNVQKEVDRLREERNAVANKMKG------KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 98 ~~~d~v~~l~~~-~r~~~~~~~~lr~~rn~lsk~i~~------~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.|+-.|+|.|-. ...+..++..|+++.-++--+=.. ..+..+...+..+...+..++..+|++++-+.+-+.+
T Consensus 515 YDVkDVIEQYSaGHldm~~RiK~LQ~rlDqi~Gk~~~~~~~~~~~~~~~~~Sm~~Rl~~vEkqv~~le~Kld~l~~~~~q 594 (654)
T KOG1419|consen 515 YDVKDVIEQYSAGHLDMLSRIKELQARLDQIVGKPPVSTDRPADSEIPEKLSMMGRLVKVEKQVQSLEKKLDLLVEILMQ 594 (654)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCCCCCccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777653 334444455555554444321100 0011122336667777778888888888777666655
Q ss_pred HHHcC--CCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCCCHHHHhhhcC-cccccc
Q 016049 171 EAQCI--PNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALD-IFDFDA 224 (396)
Q Consensus 171 ~~~~l--PN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~-l~df~~ 224 (396)
.+... +-.+...+|.+. |++......+.++++++-.+. +++..+
T Consensus 595 ~l~l~~~~~~~~s~~p~~e----------~~~~s~~~~~~~~r~~~~~~~~~~~~~r 641 (654)
T KOG1419|consen 595 CLRLMMDTSEAASYSPPKE----------GEPTSPYHSPEDSRDISDRLQSIVSISR 641 (654)
T ss_pred HHHhccccccccccCCCCC----------CCCCCCCCCcccccCcccccccEEEecc
Confidence 55444 333333333321 333333344567777776654 444433
No 332
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.65 E-value=3.6e+02 Score=31.49 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHhcCHHHHHHHHHccCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 78 KWIRDNKEAVSANIRNRNSNAN--LELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 78 ~~ir~n~e~v~~~l~~R~~~~~--~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
+.|.+..+.++..+..+...++ .+.+.....+|.....+.+.|+.+.|.+..+.
T Consensus 681 ~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~ 736 (1200)
T KOG0964|consen 681 KELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEK 736 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444455666666666644333 46666677788888888888888888887654
No 333
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=26.46 E-value=2.3e+02 Score=29.07 Aligned_cols=107 Identities=15% Similarity=0.259 Sum_probs=54.8
Q ss_pred hHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHH
Q 016049 77 FKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVT 156 (396)
Q Consensus 77 ~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~ 156 (396)
++.+.+-.+.+.+.|..-....|.+++.++.+++.+++.-++..+.-++... ++ ++.++++.+. ...++.+
T Consensus 9 l~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~-~l------~~a~~~l~~~--~D~em~e 79 (363)
T COG0216 9 LESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQE-DL------EDAKEMLAEE--KDPEMRE 79 (363)
T ss_pred HHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHHHHHHhcc--CCHHHHH
Confidence 3344444455555554444334556666666655554443333332222211 11 1222232221 1123333
Q ss_pred -HHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCceee
Q 016049 157 -LEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIR 194 (396)
Q Consensus 157 -le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee~~~v~ 194 (396)
.++++.+++.++..+-..|-+++-|.-|. |+.|+++
T Consensus 80 ma~~Ei~~~~~~~~~le~~L~~lLlPkDpn--d~knvil 116 (363)
T COG0216 80 MAEEEIKELEAKIEELEEELKILLLPKDPN--DDKNIIL 116 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCcCeEE
Confidence 46678889999988888888888877663 3445544
No 334
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=26.32 E-value=1.5e+02 Score=34.71 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----cCCchh-HHHHHHHHHhHHHhHHHHHHHHHHH
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMKG----KLEPSE-RQKLIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~----~~~~~~-~~~l~~~~~~lk~~l~~le~~~~~l 164 (396)
++.+++...+...+.++++.|+.+...+.+++.+ ++.+++ .+.-.++..+.+++++++++.+..+
T Consensus 834 l~~~iD~~~e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L 903 (1052)
T PRK14900 834 LAGVIDLAAETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAML 903 (1052)
T ss_pred CCcccCHHHHHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777888888888888888887754 222322 2223333344444444444444444
No 335
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=26.31 E-value=4.4e+02 Score=25.38 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVANKMKGKL 135 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~ 135 (396)
.+...+.+.+..+++.++.+|+.+-.+++.+.
T Consensus 140 ~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~ 171 (296)
T PF13949_consen 140 SEVIRQLRELLNKLEELKKEREELLEQLKEKL 171 (296)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777788888888888777766533
No 336
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=26.25 E-value=5.8e+02 Score=25.89 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 138 SERQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 138 ~~~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
++..++-+++.+|+.+++.|++++.+++.
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666666666666666666666543
No 337
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=26.24 E-value=7.8e+02 Score=25.88 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCc--------------------hhH--HHHHHHHHhHHHhHHHHHHHHHHH
Q 016049 107 YEKMLNVQKEVDRLREERNAVANKMKGKLEP--------------------SER--QKLIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 107 ~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~--------------------~~~--~~l~~~~~~lk~~l~~le~~~~~l 164 (396)
..+..+...++.+.....-.+.+.|+.|..+ -|. ..|..++-+|+.-+..|+.++.+.
T Consensus 291 ~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA 370 (421)
T KOG2685|consen 291 EWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEA 370 (421)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666544322 021 236777777777777777777777
Q ss_pred HHHHHHH
Q 016049 165 TDELQQE 171 (396)
Q Consensus 165 ~~~l~~~ 171 (396)
++.+..+
T Consensus 371 ~~~l~~L 377 (421)
T KOG2685|consen 371 EDSLKLL 377 (421)
T ss_pred HHHHHHH
Confidence 7666543
No 338
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=26.05 E-value=3.8e+02 Score=24.85 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=5.6
Q ss_pred ccccccccccccc
Q 016049 20 FRPVTKTLGLISR 32 (396)
Q Consensus 20 ~~~~~~~~~~~~~ 32 (396)
.+-+++.....|.
T Consensus 19 ~~GV~p~~~~~Y~ 31 (176)
T PF12999_consen 19 IRGVSPSDQHLYE 31 (176)
T ss_pred CCCCCHHHHHHcC
Confidence 3444444444333
No 339
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.87 E-value=2.7e+02 Score=29.30 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=6.1
Q ss_pred HHHHHHHHhHHHhH
Q 016049 141 QKLIEEGKNLKEGL 154 (396)
Q Consensus 141 ~~l~~~~~~lk~~l 154 (396)
..|+++..++.++.
T Consensus 58 ~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 58 NRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 340
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=25.83 E-value=3.4e+02 Score=31.36 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=3.9
Q ss_pred EEEeCCcc
Q 016049 356 MFVFCQPE 363 (396)
Q Consensus 356 ~f~f~~pe 363 (396)
.|++++..
T Consensus 1129 ~~i~~t~~ 1136 (1164)
T TIGR02169 1129 QFIVVSLR 1136 (1164)
T ss_pred eEEEEECc
Confidence 35555543
No 341
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.76 E-value=4.4e+02 Score=26.00 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVANKMKGKL 135 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~ 135 (396)
..+.++..+++..++++.++.+.+..+|..++
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk 203 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKK 203 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777775543
No 342
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.69 E-value=3e+02 Score=28.80 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=16.0
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+-++...+..+++.|-++..+++++.+.
T Consensus 142 ~t~Q~q~lqtrl~~l~~qr~ql~aq~qs 169 (499)
T COG4372 142 LTKQAQDLQTRLKTLAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666555544
No 343
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=25.66 E-value=5.5e+02 Score=23.93 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=10.8
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHH
Q 016049 147 GKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
+..++.+|.+++.....++.++.
T Consensus 145 ~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 145 LNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444443
No 344
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=25.59 E-value=5.9e+02 Score=24.22 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhh
Q 016049 79 WIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQ--KEVDRLREERNAVANKMK 132 (396)
Q Consensus 79 ~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~--~~~~~lr~~rn~lsk~i~ 132 (396)
.+.+||+.+-+.|..|.. .+-+++.--..|..+. +.++.++.+-.+..+.+.
T Consensus 10 vl~enpeilvdvL~~Rpe--ilye~l~kL~pwq~latk~dve~l~~e~E~~~k~l~ 63 (231)
T COG5493 10 VLLENPEILVDVLTQRPE--ILYEVLAKLTPWQQLATKQDVEELRKETEQRQKELA 63 (231)
T ss_pred HHHhCcHHHHHHHHhChH--HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888852 2222322222333322 366666666666655554
No 345
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=25.52 E-value=2.1e+02 Score=20.83 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=25.6
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcC
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCI 175 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~l 175 (396)
++|+....+.+.+++..+.++.++++=++.++.+|
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rV 37 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLVRV 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777788887777777765
No 346
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.52 E-value=6.1e+02 Score=24.37 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=19.7
Q ss_pred ccccccccccccccccccccccccccccccccCC
Q 016049 3 TVKLAAIPAAFSSSCFMFRPVTKTLGLISRRNHS 36 (396)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (396)
|+|--+.|----+-+--|||+-+++..+++.-|+
T Consensus 6 ~lkq~~~p~d~~~el~~~rp~vk~~y~~~~~l~~ 39 (230)
T cd07625 6 TLKQFAPPYDEYTELAEFRPLVKSIYLTAQDLQE 39 (230)
T ss_pred hhhccCcCCCCCHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444455544444444678887777776665544
No 347
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=25.46 E-value=3.3e+02 Score=21.19 Aligned_cols=46 Identities=30% Similarity=0.366 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVK 163 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~ 163 (396)
+.-........|+.+|+....++. ....+..+|++++..+.+++..
T Consensus 20 k~~~~~~~~k~L~~ERd~~~~~l~---------~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 20 KNSVHEIENKRLRRERDSAERQLG---------DAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666666655543 2334455555555555554433
No 348
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.27 E-value=2.8e+02 Score=28.49 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=22.9
Q ss_pred CHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 83 NKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 83 n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
+.....+.|..|-...| .++-.+-++|++.+.++.+++.+.|+.|..+
T Consensus 249 ~i~~~lekI~sREk~iN-~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V 296 (359)
T PF10498_consen 249 DISKTLEKIESREKYIN-NQLEPLIQEYRSAQDELSEVQEKYKQASEGV 296 (359)
T ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33344444444432211 2333344455666666666666666555443
No 349
>PRK09039 hypothetical protein; Validated
Probab=24.92 E-value=4.5e+02 Score=26.66 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHHHHHH
Q 016049 236 LKNEAVMLEMGLINWTLS 253 (396)
Q Consensus 236 l~g~~a~Le~aLi~~~~d 253 (396)
+.+.+...-..+..++.+
T Consensus 235 L~~~~~~~L~~ia~~l~~ 252 (343)
T PRK09039 235 LNPEGQAEIAKLAAALIE 252 (343)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 444433222344444433
No 350
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=24.83 E-value=5.7e+02 Score=28.22 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=56.2
Q ss_pred HHHhcCHHHHHHHHHccCCc--ccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhccCCc-----hhH
Q 016049 78 KWIRDNKEAVSANIRNRNSN--ANLE---LVLELYEKMLNVQKEVDRLREERNAVA-------NKMKGKLEP-----SER 140 (396)
Q Consensus 78 ~~ir~n~e~v~~~l~~R~~~--~~~d---~v~~l~~~~r~~~~~~~~lr~~rn~ls-------k~i~~~~~~-----~~~ 140 (396)
+.+-.|.+...+++..=|.+ .|+| .++-.-.+.-.+..+-.+|-.-+|++. .++-..... .+.
T Consensus 266 kAf~~nt~sl~eels~aGs~liGdvdegAdllGMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgEl 345 (832)
T KOG2077|consen 266 KAFDRNTESLFEELSSAGSGLIGDVDEGADLLGMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGEL 345 (832)
T ss_pred hcccccccchhhhhhhccccccccccchhhhhcchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHH
Confidence 33444667777777777654 2432 234444445555555555555555443 222111111 122
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPV 185 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~ 185 (396)
++.++-.-++.++|.++|++++.+..+....-..-----++++|.
T Consensus 346 ea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPm 390 (832)
T KOG2077|consen 346 EAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPM 390 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccH
Confidence 333333345667788888888888777766544433333455554
No 351
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=24.73 E-value=4e+02 Score=22.01 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 016049 99 NLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK 134 (396)
Q Consensus 99 ~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~ 134 (396)
|++.+.++-.+...+..++..+...|..+-..++..
T Consensus 35 d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 35 DIDELEELVEEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 788888889999999999999999999988877544
No 352
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.59 E-value=2.9e+02 Score=23.09 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 105 ELYEKMLNVQKEVDRLREERNAVA 128 (396)
Q Consensus 105 ~l~~~~r~~~~~~~~lr~~rn~ls 128 (396)
++.++..+++.++++++++...+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~ 54 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLF 54 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444443333333
No 353
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.50 E-value=4.4e+02 Score=32.35 Aligned_cols=87 Identities=10% Similarity=0.114 Sum_probs=47.4
Q ss_pred HHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 016049 88 SANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDE 167 (396)
Q Consensus 88 ~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~ 167 (396)
+..+..=|...+.+.-..+..++.++...+..-+.+++++.+++.. ...+.+.|...++.++.+++.+++.+..+.+.
T Consensus 1040 eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863 1040 KQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTF--CEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred HHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444566666666667777777766532 12234556666666666666666666666655
Q ss_pred HHHHHHcCC
Q 016049 168 LQQEAQCIP 176 (396)
Q Consensus 168 l~~~~~~lP 176 (396)
-...+-..+
T Consensus 1118 W~~v~~~~~ 1126 (1486)
T PRK04863 1118 WCAVLRLVK 1126 (1486)
T ss_pred HHHHHHHHH
Confidence 555444433
No 354
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.41 E-value=3.7e+02 Score=21.44 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCC-chhHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 112 NVQKEVDRLREERNAVANKMKGKLE-PSERQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 112 ~~~~~~~~lr~~rn~lsk~i~~~~~-~~~~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
.+-+.+..||++....-..|....+ ....++-.++++++++++....+-+..+.+
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544443222 122344556677777777666666665544
No 355
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=24.39 E-value=1.4e+02 Score=26.48 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
..+|..+|..+.+.+..+|.++.+.+.++
T Consensus 82 vqaL~S~G~sl~~kVtSLea~lEkqqQeL 110 (138)
T PF03954_consen 82 VQALSSQGGSLQDKVTSLEAKLEKQQQEL 110 (138)
T ss_pred HHHHHhccccHHhHcccHHHHHHHHHHHH
Confidence 34444445555555555555444444443
No 356
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.32 E-value=4.7e+02 Score=24.25 Aligned_cols=36 Identities=39% Similarity=0.383 Sum_probs=23.5
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 016049 146 EGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHP 181 (396)
Q Consensus 146 ~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~ 181 (396)
+....++.+...+.++..+..+....|..|-+++.+
T Consensus 114 ~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~e 149 (201)
T PF12072_consen 114 ELEQRKEELEEREEELEELIEEQQQELEEIAGLTAE 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 344444556666666777777777788888888653
No 357
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=24.21 E-value=3.1e+02 Score=30.15 Aligned_cols=77 Identities=23% Similarity=0.341 Sum_probs=48.2
Q ss_pred HHHHHHccCCccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHH
Q 016049 87 VSANIRNRNSNAN---LELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVK 163 (396)
Q Consensus 87 v~~~l~~R~~~~~---~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~ 163 (396)
++..+.+|....+ ++++-.+.++...+...++.++.--+.+.+++... ..+...+..++..|+++.+.++.+..-
T Consensus 21 LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~--~~~t~~ll~~~~~L~~~~~~~~~k~~l 98 (618)
T PF06419_consen 21 LRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAA--KSETSDLLEEASELREQKEELELKKKL 98 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455543322 46666667777777777777777777666665432 223456788888888887777766544
Q ss_pred HH
Q 016049 164 LT 165 (396)
Q Consensus 164 l~ 165 (396)
+.
T Consensus 99 l~ 100 (618)
T PF06419_consen 99 LD 100 (618)
T ss_pred HH
Confidence 43
No 358
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=24.19 E-value=6.1e+02 Score=26.34 Aligned_cols=84 Identities=11% Similarity=0.211 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKMKG-KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHP 181 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~ 181 (396)
...+++|+..+...++.-+.-+..+.+.++. +.+++ . --++.+++.+.+...+..+..+-.+|..+...|-++.-.
T Consensus 202 ~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~-l--T~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L~~L~~~ 278 (379)
T PF04518_consen 202 LAKLEKEREQIRRDIKSCERAKAVLNKQLARVKADAK-L--TSEQKSELLDSLNNYKDNLNAISNQLSLLQSLLAPLSIQ 278 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceee
Confidence 4456667766766666655555545444332 11111 1 113455666666667777777777777777777777666
Q ss_pred CCCCCCCC
Q 016049 182 DVPVGGED 189 (396)
Q Consensus 182 ~vP~g~ee 189 (396)
.+|.+++.
T Consensus 279 ~~~~~~~~ 286 (379)
T PF04518_consen 279 GVSDPDEV 286 (379)
T ss_pred cCCCCCCc
Confidence 66655443
No 359
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.14 E-value=5.6e+02 Score=23.43 Aligned_cols=7 Identities=0% Similarity=0.088 Sum_probs=2.9
Q ss_pred cchHHHh
Q 016049 75 IDFKWIR 81 (396)
Q Consensus 75 lD~~~ir 81 (396)
|.+..+.
T Consensus 80 ltl~~vI 86 (161)
T TIGR02894 80 LTLQDVI 86 (161)
T ss_pred CCHHHHH
Confidence 4444333
No 360
>PRK14127 cell division protein GpsB; Provisional
Probab=24.14 E-value=1.5e+02 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
.+..+...|++++..+++++.+++.++.
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555566666666666666655443
No 361
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=24.09 E-value=4.8e+02 Score=22.67 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKG 133 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~ 133 (396)
.+..|....+.+..++..|..+...+.++++.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~ 33 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKK 33 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888888888877777754
No 362
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=24.03 E-value=6.5e+02 Score=25.98 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=12.1
Q ss_pred hHHHhcCHHHHHHHHHccCCcccHHHHHH
Q 016049 77 FKWIRDNKEAVSANIRNRNSNANLELVLE 105 (396)
Q Consensus 77 ~~~ir~n~e~v~~~l~~R~~~~~~d~v~~ 105 (396)
|..+++..+.+.+++..=+...+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 30 (367)
T PRK00578 2 INEISERLKDLDEKLENIRGVLDVDALKE 30 (367)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 34444444444444433333344444433
No 363
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.02 E-value=4.9e+02 Score=22.71 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016049 103 VLELYEKMLNVQKEVDRLR 121 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr 121 (396)
+..+......+...++.|+
T Consensus 61 ~~~l~~d~~~l~~~~~rL~ 79 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLK 79 (151)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 3333333333333333333
No 364
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.91 E-value=5.3e+02 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
++-.++.+...++.++++++.+.+.....
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666665555543
No 365
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=23.73 E-value=86 Score=36.49 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=44.8
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcE
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHF 387 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpy 387 (396)
..-|.+.+++.+|.|.-.|-+|..-.-|.+.+||. ++.+|... .+.+++-+-++.|||..
T Consensus 48 ~~~~~~~ayv~p~~rp~d~ryg~npnrl~~~~q~q-----vi~kp~p~-----~~q~~yl~sl~~~gi~~ 107 (1000)
T PRK14908 48 GPEPWRVAYVEPSRRPDDGRYGQNPNRLQTYTQFQ-----VILKPVPG-----NPQELYLESLKAIGIDL 107 (1000)
T ss_pred CCCCCcccccCCCCCCCCCCcCCCchhhhhheeeE-----EEECCCCc-----cHHHHHHHHHHHcCCCc
Confidence 34599999999999999999998878888888886 23455321 23356667778899853
No 366
>PHA00727 hypothetical protein
Probab=23.60 E-value=2.7e+02 Score=26.43 Aligned_cols=29 Identities=10% Similarity=0.343 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
+..|++-..--+.+++|+..-+++.++|.
T Consensus 7 vs~~eeelrkaqsleelkqkyee~qkqi~ 35 (278)
T PHA00727 7 VSAWEEELRKAQSLEELKQKYEEAQKQIA 35 (278)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 34444433333445666666666666553
No 367
>PF13864 Enkurin: Calmodulin-binding
Probab=23.41 E-value=3.4e+02 Score=22.18 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHH
Q 016049 117 VDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLV 162 (396)
Q Consensus 117 ~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~ 162 (396)
++.|++..+++.+++....-..|.-..+..-..+-.+|.++|+.+.
T Consensus 46 L~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~ 91 (98)
T PF13864_consen 46 LEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIK 91 (98)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666664422112222233333344444444444443
No 368
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=23.40 E-value=3.7e+02 Score=25.83 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 139 ERQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 139 ~~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
+.+....+....+.+++.++.++..++.
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 130 (322)
T TIGR01730 103 DLDDAKAAVEAAQADLEAAKASLASAQL 130 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555544444443
No 369
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=23.31 E-value=77 Score=22.28 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC
Q 016049 156 TLEEDLVKLTDELQQEAQCIPN 177 (396)
Q Consensus 156 ~le~~~~~l~~~l~~~~~~lPN 177 (396)
+++.-++.++.++.+.--++-|
T Consensus 8 elkqll~rle~eirett~sl~n 29 (46)
T PF08181_consen 8 ELKQLLWRLENEIRETTDSLRN 29 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333333
No 370
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.29 E-value=5.5e+02 Score=25.78 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=19.2
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.++...+.+.++.|.+++.++..++.++..
T Consensus 77 ~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 77 AKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666777777777777766643
No 371
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=23.26 E-value=4.6e+02 Score=24.18 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=19.1
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
+.+..+.+.|+++-..++.+++..+++.
T Consensus 140 e~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 140 EEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777777777777777766554
No 372
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.19 E-value=4.7e+02 Score=22.52 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=15.2
Q ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 144 IEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 144 ~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
..+-..|.+++..++....++..+-.-+
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666665544333
No 373
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=23.12 E-value=5.2e+02 Score=22.70 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
.+-..-.+..+++.+++.+.+..|.--.+|+ +...++.+.+.++++.++..+...-+
T Consensus 4 ~a~~al~ki~~l~~~~~~i~~~~~~~I~~i~--------~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 4 EADWALRKIAELQREIARIEAEANDEIARIK--------EWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666677777666664444332 23444556666666666665555433
No 374
>PRK13694 hypothetical protein; Provisional
Probab=23.12 E-value=4e+02 Score=21.69 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKG 133 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~ 133 (396)
..++.|+....++.|..+++.++..|+.
T Consensus 10 a~~~Lr~fIERIERLEeEkk~i~~dikd 37 (83)
T PRK13694 10 AKEQLRAFIERIERLEEEKKTISDDIKD 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999988864
No 375
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.07 E-value=5.1e+02 Score=22.62 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=5.5
Q ss_pred HHhHHHhHHHHHHHH
Q 016049 147 GKNLKEGLVTLEEDL 161 (396)
Q Consensus 147 ~~~lk~~l~~le~~~ 161 (396)
+..+..-+..||.++
T Consensus 105 v~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 105 VDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 376
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=23.05 E-value=6.6e+02 Score=23.88 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=30.6
Q ss_pred HccCCcc-cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 016049 92 RNRNSNA-NLELVLE-LYEKMLNVQKEVDRLREERNAVANKMKGK 134 (396)
Q Consensus 92 ~~R~~~~-~~d~v~~-l~~~~r~~~~~~~~lr~~rn~lsk~i~~~ 134 (396)
..||++. .||++++ +.+.+-.+..+..+|+.+.+.+.++++..
T Consensus 19 ~~rGy~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 19 GFRGYDEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEA 63 (212)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677763 4666655 45566677788888888888888888653
No 377
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.97 E-value=3e+02 Score=19.88 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=9.0
Q ss_pred HHHHHHhHHHhHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l 164 (396)
+..++..|..+...|..++..+
T Consensus 30 le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 378
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=22.95 E-value=3.1e+02 Score=27.62 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=10.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 016049 151 KEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 151 k~~l~~le~~~~~l~~~l~~~~ 172 (396)
.+++.+++.++..++.++...-
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555544444433
No 379
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.95 E-value=3e+02 Score=30.33 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016049 139 ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMT 179 (396)
Q Consensus 139 ~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~ 179 (396)
+.....++++.++.++++++.++..-++.+.++...+=+++
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34556777888888888888877776665555444444443
No 380
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.94 E-value=1.1e+02 Score=18.92 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=11.5
Q ss_pred HHHhHHHhHHHHHHHHHHH
Q 016049 146 EGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 146 ~~~~lk~~l~~le~~~~~l 164 (396)
++..++.+|..||.++...
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455666677777666543
No 381
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=22.93 E-value=4.7e+02 Score=29.05 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=37.6
Q ss_pred cCHHHHHHHHHccCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 82 DNKEAVSANIRNRNSN---ANLELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 82 ~n~e~v~~~l~~R~~~---~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
+|.|.+.+.|.+.=.. .++..+++.+.++.++...++...++-..+...+
T Consensus 1 ~dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l 53 (701)
T PF09763_consen 1 DDADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWL 53 (701)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788887766432 4688889999998888888888888777777654
No 382
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=22.84 E-value=5.5e+02 Score=23.23 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=18.3
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 016049 149 NLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPD 182 (396)
Q Consensus 149 ~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~ 182 (396)
....+-++|...+..++.+...+...+.|..+-.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3444444555555555555555566666665443
No 383
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.69 E-value=9.5e+02 Score=27.10 Aligned_cols=29 Identities=3% Similarity=0.319 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
+..+.++.+.++..+++++.+.+....++
T Consensus 641 L~~~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 641 LERMKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555443333
No 384
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.68 E-value=8.7e+02 Score=25.37 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCC
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIP 176 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lP 176 (396)
+.++..+++.++++...+......+-+ ...++....+.++...+.+++...+.++..++..+..+-..+.
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENG-GILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-ccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555444444432221 1122333446667777888888888877777777766555443
No 385
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=22.40 E-value=4.6e+02 Score=21.90 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016049 111 LNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDV 183 (396)
Q Consensus 111 r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~v 183 (396)
.-....++.|+++-.+..+.|....+ -.+.|.......+.-+.+..+...+++.+.++....|++.+..+-
T Consensus 21 ~~qs~~i~~L~a~n~~q~~tI~qq~~--~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~lk~d~ 91 (110)
T PF10828_consen 21 WYQSQRIDRLRAENKAQAQTIQQQED--ANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTALKDDP 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 34445678888887777776653221 123344444444444444444445555555566666666665553
No 386
>PF15456 Uds1: Up-regulated During Septation
Probab=22.06 E-value=5.3e+02 Score=22.39 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 98 ANLELVLELYEKMLNVQKEVDRLREERNAV 127 (396)
Q Consensus 98 ~~~d~v~~l~~~~r~~~~~~~~lr~~rn~l 127 (396)
...++|-+|-++.+.+...++.++...+-.
T Consensus 19 Ls~eEVe~LKkEl~~L~~R~~~lr~kl~le 48 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSRLEYLRRKLALE 48 (124)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999998777733
No 387
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.03 E-value=2.9e+02 Score=31.10 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-----chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE-----PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~-----~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
...|.+|..+.+.+..++.+.+++.-.+......... ..++..|+.+++++|.+-..+-.+..+++++-..+--.
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKq 112 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQ 112 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4668888888888888888888887777754422111 11234455666666555555555566666665555444
Q ss_pred CCCC
Q 016049 175 IPNM 178 (396)
Q Consensus 175 lPN~ 178 (396)
+-++
T Consensus 113 vs~L 116 (717)
T PF09730_consen 113 VSVL 116 (717)
T ss_pred HHHH
Confidence 4444
No 388
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.87 E-value=3.1e+02 Score=20.56 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=7.0
Q ss_pred HHHHhHHHhHHHHHHHH
Q 016049 145 EEGKNLKEGLVTLEEDL 161 (396)
Q Consensus 145 ~~~~~lk~~l~~le~~~ 161 (396)
.+..+|++.+..+++..
T Consensus 21 ~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 21 KENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 389
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.83 E-value=4.2e+02 Score=25.86 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKG 133 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~ 133 (396)
+.+.|-++.+++|+++.+|++|++.+++.++.
T Consensus 51 r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s 82 (247)
T COG3879 51 RDLDLVKELRSLQKKVNTLAAEVEDLENKLDS 82 (247)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477788888888888888888888887643
No 390
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=21.81 E-value=3.7e+02 Score=23.41 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=27.9
Q ss_pred CHHHHHHHHHccCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 83 NKEAVSANIRNRNSNAN-LELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 83 n~e~v~~~l~~R~~~~~-~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
|.+.-..|+.....-.. -+++..++.+.+.+..+.+.+..+.+.++...
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNY 92 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44444444443321122 26677777777888888888777777776544
No 391
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.80 E-value=6e+02 Score=23.45 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 016049 104 LELYEKMLNVQKEV 117 (396)
Q Consensus 104 ~~l~~~~r~~~~~~ 117 (396)
..++++++.+....
T Consensus 87 ~rvrde~~~~l~~y 100 (189)
T PF10211_consen 87 LRVRDEYRMTLDAY 100 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 392
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.80 E-value=9.2e+02 Score=27.78 Aligned_cols=58 Identities=14% Similarity=0.295 Sum_probs=29.7
Q ss_pred ccccchHHHhc--CHHHHHHHHHccCCccc------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016049 72 KAAIDFKWIRD--NKEAVSANIRNRNSNAN------------L-ELVLELYEKMLNVQKEVDRLREERNAVAN 129 (396)
Q Consensus 72 k~mlD~~~ir~--n~e~v~~~l~~R~~~~~------------~-d~v~~l~~~~r~~~~~~~~lr~~rn~lsk 129 (396)
+-.+|+.++.- ..|.+.+.+..-+.+.+ + +.+-.++...++++.++++++..-.+++.
T Consensus 613 k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~ 685 (970)
T KOG0946|consen 613 KLALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQV 685 (970)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45688877653 33455555554443322 1 12233444556666666666664444443
No 393
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.78 E-value=1e+03 Score=26.62 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC---------c---hhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE---------P---SERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~---------~---~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
..|-+..+.+..+.+++...+++.|.+...+..... + +....+......+..+..+-..+..++..++
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788999999999999999988754221 1 1112233333334444444445556666666
Q ss_pred HHHHHcCCCC
Q 016049 169 QQEAQCIPNM 178 (396)
Q Consensus 169 ~~~~~~lPN~ 178 (396)
..+...|..-
T Consensus 134 e~l~~~l~g~ 143 (660)
T KOG4302|consen 134 EKLCEELGGP 143 (660)
T ss_pred HHHHHHhcCC
Confidence 7776666655
No 394
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.70 E-value=5.7e+02 Score=28.74 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------CCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKGK------LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~------~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
++.+.-+.+..+.+++.+.|..|.+-...-+.. ...+-.+.++++.+++..|++.|..++...++++..+
T Consensus 496 rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 496 RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 395
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=21.68 E-value=5.7e+02 Score=28.59 Aligned_cols=11 Identities=0% Similarity=-0.128 Sum_probs=8.1
Q ss_pred CCcEEEEeccc
Q 016049 384 GLHFKLLLFLA 394 (396)
Q Consensus 384 gLpyrvv~~~t 394 (396)
..+|-+++.|.
T Consensus 640 ~yD~IIIDtPP 650 (726)
T PRK09841 640 HYDLVIVDTPP 650 (726)
T ss_pred cCCEEEEeCCC
Confidence 35688888875
No 396
>PRK00106 hypothetical protein; Provisional
Probab=21.48 E-value=5.5e+02 Score=27.94 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=18.5
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 016049 148 KNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPD 182 (396)
Q Consensus 148 ~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~ 182 (396)
...++++.+.++++.++.++....|..+-+++.+.
T Consensus 135 e~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~e 169 (535)
T PRK00106 135 TDKSKHIDEREEQVEKLEEQKKAELERVAALSQAE 169 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 33344444444455555555555666666665543
No 397
>PHA02047 phage lambda Rz1-like protein
Probab=21.37 E-value=3.9e+02 Score=22.44 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=24.1
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVP 184 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP 184 (396)
+..+...+.+.+++++...+...+++...+.+=|---+-.||
T Consensus 46 a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~PVP 87 (101)
T PHA02047 46 LEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRPVP 87 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 334455555666666666666677777666654444444444
No 398
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.34 E-value=3.9e+02 Score=20.67 Aligned_cols=18 Identities=0% Similarity=0.008 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 016049 161 LVKLTDELQQEAQCIPNM 178 (396)
Q Consensus 161 ~~~l~~~l~~~~~~lPN~ 178 (396)
......++...+.+||++
T Consensus 44 ne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 44 NEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 333444445555666655
No 399
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.34 E-value=5.8e+02 Score=30.08 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
+.|..++..+..+++.|.+++.++.+++
T Consensus 404 ~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 404 EQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444443
No 400
>PRK06746 peptide chain release factor 2; Provisional
Probab=21.30 E-value=6.5e+02 Score=25.58 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=22.1
Q ss_pred cCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 82 DNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLRE 122 (396)
Q Consensus 82 ~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~ 122 (396)
+|++..++-.++. ..+..+++.++++++...++..+..
T Consensus 8 ~d~~~~~~~~ke~---~~l~~~v~~~~~~~~~~~d~~~~~e 45 (326)
T PRK06746 8 DDQQGAQAVINEA---NALKDMVGKFRQLDETFENLEITHE 45 (326)
T ss_pred cCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554443322 3466777777777777666665543
No 401
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.28 E-value=3.2e+02 Score=20.50 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=11.7
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 147 GKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+..++.+++++.+.+..+++.+..
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544433
No 402
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=21.21 E-value=4.5e+02 Score=31.57 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---CceEEecCCCHHHHHHHhccccCCCC
Q 016049 243 LEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQCLIGTAEIPVGGIHMDSILSESL 319 (396)
Q Consensus 243 Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~ 319 (396)
|...+..-+.+.+.++|+.++.+|.+.. ..+|-+. ....+.+-+ .-+.|...-..|++.+.... ..
T Consensus 934 l~~~v~e~~~~ifr~Hga~~l~tpp~~~---~~~~~~~----~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~N----~~ 1002 (1351)
T KOG1035|consen 934 LREYVVEEVVKIFRKHGAIELETPPLSL---RNACAYF----SRKAVELLDHSGDVVELPYDLRLPFARYVSRN----SV 1002 (1351)
T ss_pred HHHHHHHHHHHHHHHhcceeccCCcccc---ccccchh----ccceeeeecCCCCEEEeeccccchHHHHhhhc----hH
Confidence 3344444555567899999999994432 2222221 224566543 34667777888998875422 23
Q ss_pred CCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 320 LPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 320 LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
+-+|-|.++++||.+..+ .=|++-..+.-+++.. .| -.-.|++..+.+|...
T Consensus 1003 ~~~Kry~i~rVyr~~~~~---------hP~~~~ec~fDii~~t-~s-l~~AE~L~vi~Ei~~~ 1054 (1351)
T KOG1035|consen 1003 LSFKRYCISRVYRPAIHN---------HPKECLECDFDIIGPT-TS-LTEAELLKVIVEITTE 1054 (1351)
T ss_pred HHHHHhhhheeecccccC---------CCccccceeeeEecCC-CC-ccHHHHHHHHHHHHHH
Confidence 557899999999988733 2457777665555332 22 1224566666666543
No 403
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.02 E-value=7e+02 Score=24.36 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=20.0
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
..+..+...++.++..++++++......+....
T Consensus 138 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~ 170 (301)
T PF14362_consen 138 ARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIF 170 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555666666666666666666666555544
No 404
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=20.67 E-value=5.8e+02 Score=22.37 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc--CCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 113 VQKEVDRLREERNAVANKMKGK--LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 113 ~~~~~~~lr~~rn~lsk~i~~~--~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
+..+++.|+.+..++.+.+-.. ...+|.++| +-.|-++=+.+|++...+-+++...+..
T Consensus 65 l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeL---V~~IseQPK~IEkQte~LteEL~kkV~~ 125 (126)
T PF07028_consen 65 LKQELDVLSKELQALRKEYLERRPLTKEDVEEL---VLRISEQPKFIEKQTEALTEELTKKVDR 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHhCcHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444443221 234555555 4556677788888888888888776543
No 405
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.67 E-value=5.7e+02 Score=27.91 Aligned_cols=71 Identities=27% Similarity=0.352 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-----chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE-----PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~-----~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
.++..+-.+...++.+++..+.+..++..+.+.... ..+.+.|..+..+...+|.+|+..+..+..+..+.
T Consensus 164 ~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~ 239 (546)
T PF07888_consen 164 EEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQ 239 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 406
>smart00150 SPEC Spectrin repeats.
Probab=20.66 E-value=3.9e+02 Score=20.29 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=29.0
Q ss_pred HHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016049 90 NIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 90 ~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
.+..-....|++.+-.+-++...++.+++..+...+.+.+.
T Consensus 20 ~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~ 60 (101)
T smart00150 20 LLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNEL 60 (101)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333334578888888888888888888877777766653
No 407
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.52 E-value=6.1e+02 Score=22.54 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 016049 106 LYEKMLNVQKEVDRLREERNAVAN 129 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk 129 (396)
+...++.+..+++.++.++..+.+
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 408
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.44 E-value=4.1e+02 Score=22.19 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAV 127 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~l 127 (396)
.+++++.++++++++..++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l 46 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKL 46 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666665554443
No 409
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=20.33 E-value=1.4e+02 Score=28.57 Aligned_cols=55 Identities=27% Similarity=0.453 Sum_probs=25.0
Q ss_pred hccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCceeeeeeC
Q 016049 132 KGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVG 198 (396)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee~~~v~~~~g 198 (396)
+.+...+++++++++.++|++...+-+ -+..||-+.-.|+|...+..+..+..+|
T Consensus 23 k~~Ls~~e~~~i~~~~~~L~~~Q~~~d------------~~~~LP~L~~~Di~~~~~~~~~~~~~~~ 77 (248)
T PF08367_consen 23 KASLSEEEKEKIIEQTKELKERQEAED------------DLATLPTLSLSDIPREIEKIPLEVEKLG 77 (248)
T ss_dssp HHCS-HHHHHHHHHHHHHHHHHHCS--------------HHTTS----GGGS-SS------EECCCT
T ss_pred HhhCCHHHHHHHHHHHHHHHHHhCChh------------hHHHHccccHHhcCCCCCCCCceeeecC
Confidence 344455677777777777755422111 4558999999999976544333333333
No 410
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.29 E-value=3.4e+02 Score=21.71 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=19.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHc---CCCCCCCCCCCC
Q 016049 149 NLKEGLVTLEEDLVKLTDELQQEAQC---IPNMTHPDVPVG 186 (396)
Q Consensus 149 ~lk~~l~~le~~~~~l~~~l~~~~~~---lPN~~h~~vP~g 186 (396)
+|.++-..|+.++..+++++++.-.. .-|+|...||-.
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diPe~kvkFt 44 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKREFQIKEDIPEKKVKFT 44 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCccccCcCC
Confidence 34455555556666555555554443 335555555443
No 411
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.21 E-value=4.9e+02 Score=23.65 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=5.1
Q ss_pred ccHHHHHHHHH
Q 016049 98 ANLELVLELYE 108 (396)
Q Consensus 98 ~~~d~v~~l~~ 108 (396)
.++|.+-++++
T Consensus 44 e~id~imer~~ 54 (157)
T COG3352 44 EVIDAIMERMT 54 (157)
T ss_pred HHHHHHHHHHH
Confidence 34555544443
No 412
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.19 E-value=5.6e+02 Score=22.00 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=15.9
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
+..+...+.+.++.+++.+..+.+++..+
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 127 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQL 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555443
No 413
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.16 E-value=6.4e+02 Score=22.66 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 016049 115 KEVDRLREERNAVA 128 (396)
Q Consensus 115 ~~~~~lr~~rn~ls 128 (396)
.+++.++.....+.
T Consensus 130 ~~l~~l~~~~~~~~ 143 (191)
T PF04156_consen 130 ERLDSLDESIKELE 143 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 414
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=20.08 E-value=1.4e+02 Score=25.43 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCC
Q 016049 153 GLVTLEEDLVKLTDELQQEAQCIPN 177 (396)
Q Consensus 153 ~l~~le~~~~~l~~~l~~~~~~lPN 177 (396)
.+.++.+++..++.++......||.
T Consensus 24 ~l~~~~~~~~~~~~~l~~~~~~lP~ 48 (144)
T PF04350_consen 24 NLEELKKQLEQLEQQLEELLKKLPA 48 (144)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444555555666666666667764
No 415
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=20.03 E-value=5.6e+02 Score=22.93 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcC
Q 016049 138 SERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCI 175 (396)
Q Consensus 138 ~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~l 175 (396)
.+.+.+.++.+.|.+..+..+.....+.+-+...+...
T Consensus 54 a~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 54 ADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566777778888888888888888888887777664
No 416
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=20.01 E-value=1.6e+02 Score=28.88 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=44.9
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEE
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFK 388 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyr 388 (396)
.+-|.+.+++.+|-|.-.|-+|-.-.-|.+.|||.- ++ +|... .+-+++-+-++.|||.-.
T Consensus 48 GpePw~aAYVqPSRRP~DGRYGenPNRlq~yyQfQV----il-KPsP~-----NiQeLYL~SL~~lGid~~ 108 (298)
T COG0752 48 GPEPWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQV----II-KPSPD-----NIQELYLGSLEALGIDPL 108 (298)
T ss_pred CCCccceeeeccCCCCCCCCCCCCchhhhhheeEEE----Ee-cCCCc-----cHHHHHHHHHHHcCCChh
Confidence 345999999999999999999988888888888862 22 34211 244666777899999643
Done!