Query 016049
Match_columns 396
No_of_seqs 257 out of 2006
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wle_A Seryl-tRNA synthetase; 100.0 6.2E-79 2.1E-83 632.6 32.8 330 61-395 31-377 (501)
2 3qne_A Seryl-tRNA synthetase, 100.0 2.8E-79 9.7E-84 630.6 28.1 321 74-395 1-342 (485)
3 3lss_A Seryl-tRNA synthetase; 100.0 1.5E-78 5.2E-83 625.5 30.2 323 70-395 3-365 (484)
4 1ses_A Seryl-tRNA synthetase; 100.0 5.3E-76 1.8E-80 601.1 33.0 319 74-395 1-321 (421)
5 3vbb_A Seryl-tRNA synthetase, 100.0 5.9E-76 2E-80 609.9 27.8 320 73-395 1-367 (522)
6 2dq0_A Seryl-tRNA synthetase; 100.0 2.1E-75 7.3E-80 601.4 29.7 321 74-395 1-346 (455)
7 2dq3_A Seryl-tRNA synthetase; 100.0 2.3E-74 7.8E-79 589.8 30.4 321 74-395 1-325 (425)
8 3err_A Fusion protein of micro 100.0 1.1E-62 3.7E-67 515.1 35.5 252 142-395 177-430 (536)
9 1nj1_A PROR, proline-tRNA synt 100.0 5E-39 1.7E-43 334.8 12.8 209 170-394 10-228 (501)
10 3uh0_A Threonyl-tRNA synthetas 100.0 5.4E-35 1.9E-39 301.5 15.8 177 202-386 29-212 (460)
11 3mf2_A BLL0957 protein; aminoa 100.0 5.2E-33 1.8E-37 274.5 12.5 152 231-392 54-233 (346)
12 1qf6_A THRRS, threonyl-tRNA sy 100.0 4.8E-33 1.6E-37 297.6 12.7 196 190-394 212-422 (642)
13 3ial_A Prolyl-tRNA synthetase; 100.0 2.2E-32 7.5E-37 285.0 11.8 190 195-394 14-213 (518)
14 1evl_A Threonyl-tRNA synthetas 100.0 1.5E-31 5.1E-36 270.7 15.9 175 208-390 1-178 (401)
15 4hvc_A Bifunctional glutamate/ 100.0 5.3E-31 1.8E-35 274.9 16.8 174 210-393 35-218 (519)
16 2cja_A Seryl-tRNA synthetase; 100.0 8.4E-30 2.9E-34 265.5 17.9 178 200-389 196-409 (522)
17 1nyr_A Threonyl-tRNA synthetas 100.0 4.8E-30 1.7E-34 274.5 14.0 179 205-390 238-421 (645)
18 2j3l_A Prolyl-tRNA synthetase; 100.0 8.9E-29 3E-33 261.0 15.0 179 204-394 17-199 (572)
19 3a32_A Probable threonyl-tRNA 100.0 6.5E-28 2.2E-32 249.3 15.3 172 207-390 21-205 (471)
20 1nj8_A Proline-tRNA synthetase 99.9 9.4E-28 3.2E-32 247.5 15.6 181 203-393 5-195 (459)
21 1hc7_A Prolyl-tRNA synthetase; 99.9 4.9E-27 1.7E-31 243.2 16.0 178 204-393 13-200 (477)
22 2i4l_A Proline-tRNA ligase; al 99.9 8.6E-26 2.9E-30 232.7 15.7 179 204-394 37-219 (458)
23 1ati_A Glycyl-tRNA synthetase; 99.9 2.2E-25 7.5E-30 232.3 10.9 179 209-394 7-278 (505)
24 1qe0_A Histidyl-tRNA synthetas 99.9 6.7E-22 2.3E-26 200.5 15.1 152 228-391 5-163 (420)
25 3ikl_A DNA polymerase subunit 99.9 7.3E-22 2.5E-26 202.5 11.0 145 235-395 98-249 (459)
26 4e51_A Histidine--tRNA ligase; 99.8 4.7E-20 1.6E-24 190.4 15.0 151 228-390 35-191 (467)
27 1h4v_B Histidyl-tRNA synthetas 99.8 7.1E-19 2.4E-23 178.4 16.4 152 228-391 6-163 (421)
28 2zt5_A Glycyl-tRNA synthetase; 99.8 3.2E-19 1.1E-23 191.9 10.7 173 208-386 68-369 (693)
29 1wu7_A Histidyl-tRNA synthetas 99.8 2.6E-18 9E-23 175.2 16.8 148 228-391 9-162 (434)
30 1z7m_A ATP phosphoribosyltrans 99.8 5E-18 1.7E-22 168.9 16.5 148 228-390 25-178 (344)
31 1htt_A Histidyl-tRNA synthetas 99.8 2.6E-18 9E-23 174.3 14.6 151 228-391 7-164 (423)
32 1g5h_A Mitochondrial DNA polym 99.8 1.3E-19 4.5E-24 186.5 4.5 178 208-391 25-235 (454)
33 3od1_A ATP phosphoribosyltrans 99.7 3.2E-17 1.1E-21 166.2 16.5 148 228-390 13-164 (400)
34 3rac_A Histidine-tRNA ligase; 99.7 2.6E-17 9E-22 165.5 15.0 156 228-390 26-185 (373)
35 3net_A Histidyl-tRNA synthetas 99.7 8.3E-17 2.8E-21 166.0 16.2 161 213-390 3-183 (465)
36 3lc0_A Histidyl-tRNA synthetas 99.7 6.9E-17 2.4E-21 166.4 14.7 148 228-390 32-186 (456)
37 3dsq_A Pyrrolysyl-tRNA synthet 99.7 1.8E-15 6.1E-20 147.2 16.4 137 245-393 74-213 (288)
38 4g85_A Histidine-tRNA ligase, 99.6 3.1E-15 1.1E-19 155.9 14.5 146 228-389 70-220 (517)
39 4g84_A Histidine--tRNA ligase, 99.6 7.3E-15 2.5E-19 150.4 15.2 146 228-389 17-167 (464)
40 1usy_A ATP phosphoribosyltrans 99.4 2.3E-13 7.8E-18 131.3 8.0 119 246-390 5-128 (275)
41 3qtc_A Pyrrolysyl-tRNA synthet 99.4 8.9E-12 3.1E-16 120.9 15.4 135 245-392 80-215 (290)
42 1nnh_A Asparaginyl-tRNA synthe 98.6 2.5E-07 8.6E-12 89.9 12.2 121 240-383 14-140 (294)
43 1wyd_A Hypothetical aspartyl-t 98.5 1.1E-06 3.7E-11 89.8 13.0 110 240-373 133-246 (429)
44 1x54_A Asparaginyl-tRNA synthe 98.4 1.8E-06 6.1E-11 88.3 12.5 99 240-361 134-234 (434)
45 1eov_A ASPRS, aspartyl-tRNA sy 98.3 3E-06 1E-10 87.8 13.0 114 240-376 177-295 (487)
46 3a74_A Lysyl-tRNA synthetase; 98.3 3.8E-06 1.3E-10 87.1 13.5 112 240-374 173-289 (493)
47 1n9w_A Aspartyl-tRNA synthetas 98.3 1.7E-06 5.8E-11 88.1 9.8 111 240-374 124-239 (422)
48 3a5y_A GENX, putative lysyl-tR 98.3 7.7E-06 2.6E-10 81.2 13.1 114 239-374 34-156 (345)
49 1e1o_A Lysyl-tRNA synthetase, 98.2 8.9E-06 3.1E-10 84.6 13.1 114 239-375 181-299 (504)
50 2xgt_A Asparaginyl-tRNA synthe 98.0 3.4E-05 1.2E-09 78.8 12.8 114 240-376 131-247 (435)
51 3nem_A Aspartyl-tRNA synthetas 98.0 4E-05 1.4E-09 78.4 12.3 114 241-376 137-254 (438)
52 1b7y_A Phers, protein (phenyla 97.9 0.00015 5E-09 72.1 14.0 125 245-386 104-248 (350)
53 3m4p_A Ehasnrs, asparaginyl-tR 97.9 7.4E-05 2.5E-09 76.7 11.9 114 240-376 155-271 (456)
54 3bju_A Lysyl-tRNA synthetase; 97.8 0.00016 5.3E-09 75.5 13.4 114 240-376 175-293 (521)
55 3l4g_A Phenylalanyl-tRNA synth 97.8 0.00013 4.4E-09 75.8 12.4 129 245-386 228-401 (508)
56 4ex5_A Lysine--tRNA ligase; st 97.8 0.0002 6.7E-09 74.8 13.0 114 240-376 203-321 (529)
57 1c0a_A Aspartyl tRNA synthetas 97.7 0.00031 1E-08 74.3 14.2 113 241-377 138-256 (585)
58 1l0w_A Aspartyl-tRNA synthetas 97.7 0.00035 1.2E-08 73.7 13.9 112 241-376 144-261 (580)
59 3i7f_A Aspartyl-tRNA synthetas 97.7 0.00025 8.7E-09 74.2 12.3 115 240-376 243-361 (548)
60 4ah6_A Aspartate--tRNA ligase, 97.6 0.00066 2.3E-08 72.0 13.7 112 241-382 148-264 (617)
61 2rhq_A Phenylalanyl-tRNA synth 97.5 0.0011 3.7E-08 64.2 13.4 126 245-386 56-187 (294)
62 2du3_A O-phosphoseryl-tRNA syn 97.2 0.0019 6.6E-08 67.3 12.1 83 296-390 181-265 (534)
63 2du7_A O-phosphoseryl-tRNA syn 97.1 0.0036 1.2E-07 65.4 12.9 78 296-386 192-272 (549)
64 3pco_A Phenylalanyl-tRNA synth 97.1 0.00097 3.3E-08 65.6 7.4 119 245-383 110-234 (327)
65 2odr_B Phosphoseryl-tRNA synth 96.8 0.0055 1.9E-07 64.8 11.2 81 297-390 200-284 (648)
66 2odr_A Phosphoseryl-tRNA synth 96.8 0.0058 2E-07 64.7 11.2 81 297-390 200-284 (665)
67 2odr_D Phosphoseryl-tRNA synth 96.8 0.0061 2.1E-07 64.7 11.2 81 297-390 200-284 (685)
68 2odr_C Phosphoseryl-tRNA synth 96.7 0.0074 2.5E-07 64.2 11.4 82 296-390 199-284 (701)
69 3l4g_B Phenylalanyl-tRNA synth 96.7 0.018 6.1E-07 60.8 13.8 125 245-386 394-525 (589)
70 3ig2_A Phenylalanyl-tRNA synth 96.4 0.045 1.6E-06 50.1 13.4 136 245-386 7-154 (213)
71 3ica_A Phenylalanyl-tRNA synth 96.2 0.073 2.5E-06 48.7 13.5 140 245-390 7-161 (213)
72 2rhq_B Phenylalanyl-tRNA synth 96.0 0.021 7E-07 62.5 10.0 129 245-389 496-638 (795)
73 3cmq_A Phenylalanyl-tRNA synth 95.8 0.13 4.3E-06 52.1 14.1 114 259-389 73-227 (415)
74 1b7y_B Phers, protein (phenyla 95.2 0.064 2.2E-06 58.5 10.0 123 245-390 492-627 (785)
75 3na7_A HP0958; flagellar bioge 83.4 7.6 0.00026 36.1 10.6 69 102-170 54-122 (256)
76 3hnw_A Uncharacterized protein 83.4 6.2 0.00021 33.7 9.1 67 104-170 64-135 (138)
77 3qh9_A Liprin-beta-2; coiled-c 83.2 5.1 0.00017 31.1 7.6 59 101-168 19-77 (81)
78 3pco_B Phenylalanyl-tRNA synth 82.1 4 0.00014 44.5 9.1 124 248-385 495-630 (795)
79 3hnw_A Uncharacterized protein 75.5 24 0.00083 29.9 10.3 63 101-163 68-135 (138)
80 2lw1_A ABC transporter ATP-bin 71.7 33 0.0011 26.6 9.7 58 109-166 23-84 (89)
81 2yy0_A C-MYC-binding protein; 71.6 7.3 0.00025 27.8 5.1 34 136-169 17-50 (53)
82 3ghg_A Fibrinogen alpha chain; 70.6 5.7 0.0002 40.9 5.9 59 103-161 87-154 (562)
83 1x79_B RAB GTPase binding effe 67.6 31 0.001 28.4 8.7 61 101-161 6-68 (112)
84 2l5g_A GPS2 protein, G protein 62.6 14 0.00046 24.5 4.5 29 147-175 10-38 (38)
85 4fi5_A Nucleoprotein; structur 62.3 64 0.0022 26.4 10.0 80 105-190 26-107 (113)
86 3tnu_B Keratin, type II cytosk 61.4 49 0.0017 27.4 9.2 32 101-132 36-67 (129)
87 1deq_A Fibrinogen (alpha chain 60.3 28 0.00095 34.5 8.4 31 101-131 88-118 (390)
88 2jee_A YIIU; FTSZ, septum, coi 60.2 58 0.002 25.2 10.2 56 110-174 22-77 (81)
89 3mq7_A Bone marrow stromal ant 58.4 48 0.0016 27.4 8.2 36 141-176 74-109 (121)
90 2v4h_A NF-kappa-B essential mo 58.3 29 0.00098 28.5 6.8 91 63-157 12-102 (110)
91 3sja_C Golgi to ER traffic pro 57.9 26 0.00088 26.1 5.9 25 106-130 4-28 (65)
92 3sjb_C Golgi to ER traffic pro 57.1 32 0.0011 27.4 6.7 66 106-175 21-86 (93)
93 2wt7_B Transcription factor MA 56.4 12 0.00042 29.6 4.2 69 98-169 18-86 (90)
94 1ic2_A Tropomyosin alpha chain 54.4 69 0.0024 24.3 8.6 61 108-170 6-66 (81)
95 4dzn_A Coiled-coil peptide CC- 53.0 28 0.00097 21.7 4.5 26 140-165 4-29 (33)
96 3tnu_A Keratin, type I cytoske 52.2 54 0.0018 27.2 7.9 63 101-168 38-100 (131)
97 1m1j_A Fibrinogen alpha subuni 51.5 76 0.0026 32.2 9.9 61 101-161 86-155 (491)
98 3na7_A HP0958; flagellar bioge 49.0 1.1E+02 0.0039 27.9 10.4 29 148-176 146-174 (256)
99 2zqm_A Prefoldin beta subunit 48.9 98 0.0033 24.5 10.9 31 143-173 82-112 (117)
100 2dfs_A Myosin-5A; myosin-V, in 47.6 58 0.002 36.6 9.5 23 143-165 1021-1043(1080)
101 4h22_A Leucine-rich repeat fli 47.2 47 0.0016 26.9 6.3 28 104-131 19-46 (103)
102 1lq7_A Alpha3W; three helix bu 47.1 73 0.0025 22.7 6.6 9 159-167 55-63 (67)
103 3oja_B Anopheles plasmodium-re 46.3 49 0.0017 33.7 8.1 40 139-178 545-584 (597)
104 1l8d_A DNA double-strand break 46.1 1.1E+02 0.0037 24.2 9.8 28 102-129 18-45 (112)
105 2ztg_A Alanyl-tRNA synthetase; 45.4 36 0.0012 36.7 7.0 115 246-386 64-180 (739)
106 2p4v_A Transcription elongatio 44.6 60 0.002 27.9 7.2 54 110-170 11-71 (158)
107 3rf1_A Glycyl-tRNA synthetase 44.5 31 0.0011 32.8 5.5 60 317-386 67-126 (311)
108 3lay_A Zinc resistance-associa 44.5 1.6E+02 0.0056 25.8 10.4 34 120-153 94-128 (175)
109 3d5a_X RF1, peptide chain rele 44.5 1.9E+02 0.0065 28.3 11.5 69 98-172 26-96 (354)
110 1fxk_A Prefoldin; archaeal pro 43.8 1.1E+02 0.0038 23.7 10.6 31 141-171 68-98 (107)
111 1grj_A GREA protein; transcrip 43.4 66 0.0023 27.6 7.3 60 109-170 10-71 (158)
112 2wt7_A Proto-oncogene protein 43.4 50 0.0017 23.9 5.6 26 143-168 28-53 (63)
113 1t2k_D Cyclic-AMP-dependent tr 43.4 59 0.002 23.3 5.9 28 142-169 26-53 (61)
114 2l5g_B Putative uncharacterize 42.8 40 0.0014 22.9 4.4 29 142-170 6-34 (42)
115 3u06_A Protein claret segregat 42.0 66 0.0023 32.1 8.0 54 109-171 4-57 (412)
116 3a7p_A Autophagy protein 16; c 41.8 1.7E+02 0.0058 25.2 10.5 57 116-172 69-130 (152)
117 3oja_A Leucine-rich immune mol 41.8 1.5E+02 0.005 29.4 10.7 35 139-173 443-477 (487)
118 1j5w_A Glycyl-tRNA synthetase 41.1 33 0.0011 32.5 5.1 59 318-386 56-114 (298)
119 3oja_B Anopheles plasmodium-re 40.9 1.5E+02 0.0052 29.9 10.9 26 145-170 544-569 (597)
120 3bas_A Myosin heavy chain, str 40.7 1.2E+02 0.0042 23.3 9.1 22 109-130 36-57 (89)
121 4etp_A Kinesin-like protein KA 40.3 69 0.0024 31.8 7.8 51 112-171 7-57 (403)
122 3iv1_A Tumor susceptibility ge 39.4 1.3E+02 0.0044 23.1 10.2 55 107-170 17-71 (78)
123 3u59_A Tropomyosin beta chain; 39.2 1.4E+02 0.0048 23.5 8.7 64 100-165 22-85 (101)
124 3u1c_A Tropomyosin alpha-1 cha 39.1 1.4E+02 0.0049 23.6 8.7 63 101-165 23-85 (101)
125 1gqe_A Release factor 2, RF2; 38.3 3E+02 0.01 27.0 12.6 54 74-127 24-77 (365)
126 2fxo_A Myosin heavy chain, car 37.7 1.7E+02 0.0058 24.0 9.2 23 109-131 35-57 (129)
127 1jnm_A Proto-oncogene C-JUN; B 37.4 46 0.0016 24.0 4.5 27 142-168 26-52 (62)
128 2f23_A Anti-cleavage anti-GREA 37.0 1.1E+02 0.0039 25.9 7.8 54 110-170 12-71 (156)
129 2dfs_A Myosin-5A; myosin-V, in 36.6 1E+02 0.0035 34.6 9.2 18 152-169 1023-1040(1080)
130 1ci6_A Transcription factor AT 35.7 36 0.0012 24.8 3.7 25 143-167 28-52 (63)
131 1lq7_A Alpha3W; three helix bu 35.4 65 0.0022 23.0 4.8 20 82-101 9-28 (67)
132 1zbt_A RF-1, peptide chain rel 34.9 38 0.0013 33.5 4.8 22 149-170 91-112 (371)
133 3ghg_A Fibrinogen alpha chain; 34.9 65 0.0022 33.3 6.6 10 101-110 67-76 (562)
134 3o0z_A RHO-associated protein 34.3 2.1E+02 0.0073 25.0 9.0 13 148-160 121-133 (168)
135 3mq9_A Bone marrow stromal ant 33.7 1.4E+02 0.0048 29.4 9.0 26 145-170 443-468 (471)
136 3onj_A T-snare VTI1; helix, HA 33.2 1.5E+02 0.0052 23.2 7.4 58 109-166 31-94 (97)
137 3jsv_C NF-kappa-B essential mo 32.6 74 0.0025 25.3 5.2 52 76-129 3-54 (94)
138 3tso_C RAB11 family-interactin 32.6 73 0.0025 24.3 4.9 42 139-180 15-60 (75)
139 4ioe_A Secreted protein ESXB; 32.6 1.5E+02 0.0052 21.9 11.5 72 98-172 9-83 (93)
140 3v86_A De novo design helix; c 32.2 72 0.0025 19.0 3.8 8 147-154 9-16 (27)
141 1i84_S Smooth muscle myosin he 32.2 86 0.0029 35.4 7.8 18 147-164 922-939 (1184)
142 2wt7_B Transcription factor MA 31.4 1.9E+02 0.0065 22.7 10.2 45 87-131 29-78 (90)
143 1vcs_A Vesicle transport throu 30.9 1.5E+02 0.0052 23.4 7.1 56 109-164 35-93 (102)
144 1cxz_B Protein (PKN); protein- 30.7 1.4E+02 0.0049 23.2 6.5 21 150-170 61-81 (86)
145 2w83_C C-JUN-amino-terminal ki 30.3 1.2E+02 0.004 23.2 5.8 26 143-168 49-74 (77)
146 3uul_A Utrophin; spectrin repe 30.2 1.8E+02 0.0063 22.2 13.0 76 97-172 32-112 (118)
147 3mq7_A Bone marrow stromal ant 30.1 2.3E+02 0.008 23.3 10.1 92 80-173 6-99 (121)
148 1gk4_A Vimentin; intermediate 29.3 1.5E+02 0.0053 22.5 6.6 13 118-130 4-16 (84)
149 2js5_A Uncharacterized protein 29.3 84 0.0029 23.7 4.8 31 147-177 5-35 (71)
150 3vlc_E Golgi to ER traffic pro 28.9 20 0.00067 28.7 1.3 24 107-130 29-52 (94)
151 1jcd_A Major outer membrane li 28.9 1.5E+02 0.0052 20.9 7.6 21 148-168 28-48 (52)
152 2zqm_A Prefoldin beta subunit 28.4 2.1E+02 0.0073 22.4 7.8 35 140-174 72-106 (117)
153 4h22_A Leucine-rich repeat fli 28.3 2.3E+02 0.008 22.8 7.8 31 101-131 2-32 (103)
154 1x79_B RAB GTPase binding effe 27.9 2.5E+02 0.0084 22.9 7.8 24 143-166 43-66 (112)
155 2wuj_A Septum site-determining 27.8 43 0.0015 23.9 2.9 12 94-105 18-30 (57)
156 2qyw_A Vesicle transport throu 27.6 2.3E+02 0.0077 22.4 7.6 52 109-160 46-100 (102)
157 2fup_A Hypothetical protein PA 26.9 2.6E+02 0.009 22.9 8.5 34 99-132 37-70 (157)
158 1lki_A Leukemia inhibitory fac 26.8 3.3E+02 0.011 24.0 9.1 72 101-188 78-149 (180)
159 3u1c_A Tropomyosin alpha-1 cha 26.7 2.3E+02 0.008 22.3 8.6 59 109-169 10-68 (101)
160 3gwk_C SAG1039, putative uncha 26.6 2E+02 0.007 21.5 10.3 68 99-170 9-80 (98)
161 2ocy_A RAB guanine nucleotide 26.5 3.1E+02 0.011 23.6 9.8 14 104-117 16-29 (154)
162 3uun_A Dystrophin; triple heli 26.3 2.2E+02 0.0074 21.7 12.6 77 97-173 32-113 (119)
163 3csx_A Putative uncharacterize 26.2 68 0.0023 24.8 3.9 32 146-177 16-47 (81)
164 1lrz_A FEMA, factor essential 26.0 2.1E+02 0.0072 28.0 8.6 23 142-164 278-300 (426)
165 1jcd_A Major outer membrane li 25.9 1.5E+02 0.005 21.0 5.3 10 112-121 15-24 (52)
166 1g6u_A Domain swapped dimer; d 25.9 1.1E+02 0.0039 20.4 4.4 24 147-170 22-45 (48)
167 1c1g_A Tropomyosin; contractIl 25.7 3.2E+02 0.011 23.4 10.1 28 143-170 81-108 (284)
168 3zbh_A ESXA; unknown function, 25.2 2.1E+02 0.0072 21.2 10.8 69 98-170 9-81 (99)
169 1m1j_C Fibrinogen gamma chain; 24.6 2.7E+02 0.0093 27.7 9.1 24 150-173 110-133 (409)
170 2eqb_B RAB guanine nucleotide 24.4 2.5E+02 0.0087 22.3 7.1 18 153-170 77-94 (97)
171 3ra3_B P2F; coiled coil domain 24.1 77 0.0026 19.0 2.9 22 143-164 5-26 (28)
172 3q0x_A Centriole protein; cent 23.7 1.4E+02 0.0049 27.3 6.3 50 74-131 152-201 (228)
173 2lf0_A Uncharacterized protein 23.1 2.7E+02 0.0093 23.0 7.2 64 113-176 8-74 (123)
174 1go4_E MAD1 (mitotic arrest de 22.8 2.8E+02 0.0095 22.2 7.1 31 101-131 12-42 (100)
175 2p32_A Heat shock 70 kDa prote 22.5 2.6E+02 0.009 22.2 7.2 8 159-166 75-82 (120)
176 3oja_A Leucine-rich immune mol 22.5 3E+02 0.01 27.1 9.1 25 142-166 453-477 (487)
177 1hjb_A Ccaat/enhancer binding 22.4 1.2E+02 0.0042 23.6 4.8 33 141-177 46-78 (87)
178 2zvf_A Alanyl-tRNA synthetase; 22.3 1.5E+02 0.0052 24.9 6.0 26 143-168 30-55 (171)
179 3u59_A Tropomyosin beta chain; 21.7 2.9E+02 0.01 21.6 8.6 59 109-169 10-68 (101)
180 3lay_A Zinc resistance-associa 21.5 4.1E+02 0.014 23.2 8.7 70 101-174 71-142 (175)
181 4dk0_A Putative MACA; alpha-ha 21.3 5E+02 0.017 24.2 10.1 42 137-178 114-155 (369)
182 2oqq_A Transcription factor HY 21.3 1.7E+02 0.0057 19.8 4.5 27 142-168 7-33 (42)
183 3kdq_A Uncharacterized conserv 20.9 3.4E+02 0.012 23.2 7.8 21 108-128 11-31 (154)
184 1rq0_A RF-1, peptide chain rel 20.8 2.7E+02 0.0093 27.1 7.9 23 151-173 59-81 (342)
185 2gd5_A Charged multivesicular 20.8 4E+02 0.014 22.9 8.5 68 104-171 17-90 (179)
186 2zvf_A Alanyl-tRNA synthetase; 20.8 2.9E+02 0.01 23.1 7.5 41 124-164 16-58 (171)
187 2dgc_A Protein (GCN4); basic d 20.6 1.3E+02 0.0043 21.9 4.3 25 142-166 34-58 (63)
188 2ke4_A CDC42-interacting prote 20.3 2.9E+02 0.01 21.8 6.8 62 106-170 20-87 (98)
189 1m1j_B Fibrinogen beta chain; 20.1 4.1E+02 0.014 26.8 9.4 25 147-171 170-194 (464)
190 1gu4_A CAAT/enhancer binding p 20.1 2.3E+02 0.008 21.5 5.9 22 147-168 45-66 (78)
No 1
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=6.2e-79 Score=632.62 Aligned_cols=330 Identities=31% Similarity=0.604 Sum_probs=308.9
Q ss_pred CCCCccCCCccccccchHHHhcCHHHHHHHHHccCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-C
Q 016049 61 NKGGVAVKPQWKAAIDFKWIRDNKEAVSANIRNRNSN---ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKL-E 136 (396)
Q Consensus 61 ~~~~~~~~~~~k~mlD~~~ir~n~e~v~~~l~~R~~~---~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~-~ 136 (396)
+..+++ .+||||+++||+|+|.|++++++|+.+ .++|+|+++|++||++++++++|+++||++||+|+.++ .
T Consensus 31 ~~~~~~----~~pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 31 AREGYS----ALPLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HHTTSS----CCCCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCC----CCCccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555 468999999999999999999999986 35899999999999999999999999999999997522 1
Q ss_pred c--------hhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCC
Q 016049 137 P--------SERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVK 208 (396)
Q Consensus 137 ~--------~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~ 208 (396)
+ ++.++|++++++|+++|+++++++.+++++++.+++.|||++||+||+|+|++|+++++||+++.|+|+++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g~e~~n~~v~~~g~~~~~~f~~~ 186 (501)
T 1wle_A 107 QDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGDKPAFSFQPR 186 (501)
T ss_dssp HCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCSSGGGCEEEEEESCCCCCSSCCC
T ss_pred CccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCC
Confidence 1 36778999999999999999999999999999999999999999999997778889999999999999999
Q ss_pred CHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCccc
Q 016049 209 DHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQV 288 (396)
Q Consensus 209 dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~ 288 (396)
||++||+++|||||+++++++|+||||+.|.+++|+++|++|+++.+.++||++|.||.|++.++|++||++|+|.+++|
T Consensus 187 dH~~Lg~~lgl~d~~~~~k~~G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~em 266 (501)
T 1wle_A 187 GHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQI 266 (501)
T ss_dssp CHHHHHHHHTCEECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSS
T ss_pred CHHHHHhhcCceecccccccccCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876579
Q ss_pred EEEeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc--c
Q 016049 289 YSIEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP--E 363 (396)
Q Consensus 289 y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p--e 363 (396)
|++++ +++||+||+|+|++++|+++++++++||+||+++|+|||+|++ +|++++||+|+|||+|+|+|+||+| +
T Consensus 267 f~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~-~G~d~~GL~RvhqF~kvE~~~f~~pe~e 345 (501)
T 1wle_A 267 YNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPGLE 345 (501)
T ss_dssp CBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCS-CC--CCSSSSCSEEEEEEEEEEECSSHH
T ss_pred EEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCC-CCCCCcCceeeeeeeeeeEEEEeCCcHH
Confidence 99974 4899999999999999999999999999999999999999999 9999999999999999999999999 5
Q ss_pred chHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 364 ESDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 364 ~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+|++++++|++++++||+.||||||++.+||+
T Consensus 346 ~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tg 377 (501)
T 1wle_A 346 QSSELLEEFLSLQMEILTELGLHFRVLDMPTQ 377 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 89999999999999999999999999999985
No 2
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=2.8e-79 Score=630.57 Aligned_cols=321 Identities=24% Similarity=0.437 Sum_probs=301.9
Q ss_pred ccchHHHhc----CHHHHHHHHHccCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCchhHHHHHHHH
Q 016049 74 AIDFKWIRD----NKEAVSANIRNRNSNAN-LELVLELYEKMLNVQKEVDRLREERNAVANKMKG-KLEPSERQKLIEEG 147 (396)
Q Consensus 74 mlD~~~ir~----n~e~v~~~l~~R~~~~~-~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-~~~~~~~~~l~~~~ 147 (396)
|||+++||+ |+|.|++++++|+.+.+ +|+|++||++||+++.++++|+++||++||+|+. ++.+++.++|++++
T Consensus 1 Mldi~~ir~~~~~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~ 80 (485)
T 3qne_A 1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEK 80 (485)
T ss_dssp CCCGGGGCGGGTCCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCChHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 899999999 99999999999998865 8999999999999999999999999999999976 44566788999999
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC-CCceeeeeeCCCC----------CCCCCCCCHHHHhhh
Q 016049 148 KNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGE-DCSIIRKTVGNPS----------VFNFPVKDHFQLGKA 216 (396)
Q Consensus 148 ~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~e-e~~~v~~~~g~~~----------~~~f~~~dH~eLg~~ 216 (396)
++|+++|+++++++.+++++++++++.|||++||+||+|.+ ++|+++++||+++ .++|+++||++||++
T Consensus 81 ~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~g~~~~~~~~~~~~~~~~~~~~dH~elg~~ 160 (485)
T 3qne_A 81 EKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLR 160 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEECCTTCCSSSSBCTTTCCBCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCccCCEEEEEeCCCCccccccccccccCCCccCHHHHHhh
Confidence 99999999999999999999999999999999999999965 4788999999988 458899999999999
Q ss_pred cCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC--C
Q 016049 217 LDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG--A 294 (396)
Q Consensus 217 l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~--~ 294 (396)
+||+||+++++++|+||||+.|.|++|+++|++|+++.+.++||++|.+|.|++.++|++|||++.|.+ +||++++ +
T Consensus 161 l~l~df~~~~k~sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~e-emf~v~~~~~ 239 (485)
T 3qne_A 161 LDGYDPERGVRIVGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDE-ELYKVIDGED 239 (485)
T ss_dssp TTCEEHHHHHHHHCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTT-TCCEEEETTE
T ss_pred cCCcccccccccccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCcccccc-ceEEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998875 7999985 6
Q ss_pred ceEEecCCCHHHHHHHhccccC--CCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHH
Q 016049 295 DQCLIGTAEIPVGGIHMDSILS--ESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372 (396)
Q Consensus 295 ~l~L~pTaEvpl~~l~~~~~l~--~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~ 372 (396)
++||+||||||++++|++++++ +++||+||+++|+|||+|+|++|++++||+|+|||+|+|+|+||+|++|++++++|
T Consensus 240 ~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~m 319 (485)
T 3qne_A 240 EKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRM 319 (485)
T ss_dssp EEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHH
T ss_pred eEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHH
Confidence 8999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEecccC
Q 016049 373 IRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 373 l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
++++++||+.||||||++.+||+
T Consensus 320 l~~~e~il~~LgLpyrvv~~~tg 342 (485)
T 3qne_A 320 IGCSEEFYQSLGLPYRVVGIVSG 342 (485)
T ss_dssp HHHHHHHHHHTTCCEEEEECCGG
T ss_pred HHHHHHHHHHCCCcEEEEEcCCc
Confidence 99999999999999999999985
No 3
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=1.5e-78 Score=625.54 Aligned_cols=323 Identities=27% Similarity=0.485 Sum_probs=300.2
Q ss_pred ccccccchHHHhcCH--HHHHHHHHccCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-C----------
Q 016049 70 QWKAAIDFKWIRDNK--EAVSANIRNRNSNAN-LELVLELYEKMLNVQKEVDRLREERNAVANKMKGK-L---------- 135 (396)
Q Consensus 70 ~~k~mlD~~~ir~n~--e~v~~~l~~R~~~~~-~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~-~---------- 135 (396)
--.+|||+++||+|+ |.|++++++|+.+.+ +|+|++||++||++++++++|+++||++||+|+.+ +
T Consensus 3 ~~~mmldi~~~r~~~~~~~v~~~~~~R~~~~~~~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~ 82 (484)
T 3lss_A 3 GSMMVLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSE 82 (484)
T ss_dssp CCCCCCCGGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred CccccccHHHHHcCCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 346799999999996 999999999998865 89999999999999999999999999999999652 2
Q ss_pred --------------CchhHHHH----HHH-HHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC-C-ceee
Q 016049 136 --------------EPSERQKL----IEE-GKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGED-C-SIIR 194 (396)
Q Consensus 136 --------------~~~~~~~l----~~~-~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee-~-~~v~ 194 (396)
.+++.++| +++ +++|+++|+++++++.+++++++++++.|||++||+||+|.+| + |+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~~n~~v 162 (484)
T 3lss_A 83 IPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVV 162 (484)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEE
T ss_pred ccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCcccCcEEE
Confidence 34556778 899 9999999999999999999999999999999999999999765 4 7899
Q ss_pred eeeCCCCCCCCCCCCHHHHhhhcCcccccccc-ccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHH
Q 016049 195 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAA-EVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSV 273 (396)
Q Consensus 195 ~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~a-kvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~ 273 (396)
++||+++. |+++||++||+++|||||++++ +++|+||||+.|.|++|+++|++|+++.+.++||++|.||.|++.++
T Consensus 163 ~~~g~~~~--~~~rdH~~Lg~~l~l~df~~~a~k~sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l 240 (484)
T 3lss_A 163 RTFGNTTK--RAKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDV 240 (484)
T ss_dssp EEESCTTC--CCSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHH
T ss_pred EecCCCCC--CCCCCHHHHHhhCCceeccccccccCCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHH
Confidence 99999886 7899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCcccEEEeC--CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeE
Q 016049 274 VEKCGFQPRGANTQVYSIEG--ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQF 351 (396)
Q Consensus 274 ~~~sG~~p~~~~~q~y~i~~--~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF 351 (396)
|++|||+|+|.+ +||++++ +++||+||+|+|++++|+++++++++||+||+++|+|||+|+|++|++++||+|+|||
T Consensus 241 ~~~sG~~~~f~e-~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF 319 (484)
T 3lss_A 241 MGEVAQLSQFDE-ELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQF 319 (484)
T ss_dssp HHHHSCHHHHHH-TCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEE
T ss_pred HHhcCCcccccc-cceEeecCCcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeE
Confidence 999999998865 7999984 6899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeEEEeCCccc--hHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 352 SKLEMFVFCQPEE--SDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 352 ~kvE~f~f~~pe~--S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+|+|+|+||+|++ |++++++|++++++||+.||||||+|.+||+
T Consensus 320 ~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~tg 365 (484)
T 3lss_A 320 DKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSG 365 (484)
T ss_dssp EEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred EEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 9999999999999 9999999999999999999999999999986
No 4
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=5.3e-76 Score=601.07 Aligned_cols=319 Identities=34% Similarity=0.557 Sum_probs=308.5
Q ss_pred ccchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHh
Q 016049 74 AIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEG 153 (396)
Q Consensus 74 mlD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~ 153 (396)
|||+++||+|+|.|++++++|+.+.++|+|+++|++||++++++++|+++||++||+|+. +.+++.++|++++++++++
T Consensus 1 mld~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~ 79 (421)
T 1ses_A 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK-APPEEKEALIARGKALGEE 79 (421)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhCHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHH
Confidence 899999999999999999999988779999999999999999999999999999999987 6667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcce
Q 016049 154 LVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKF 233 (396)
Q Consensus 154 l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf 233 (396)
++++++++.++++++..+++.|||++||+||+|+|++|+++++||+++.|+|+++||++||+++||+| +++++++|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g~e~~n~~~~~~g~~~~~~~~~~~H~~lg~~l~l~d-~~~~~~~g~G~ 158 (421)
T 1ses_A 80 AKRLEEALREKEARLEALLLQVPLPPWPGAPVGGEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE-PRISQVSGSRS 158 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccEEEEEeCCCCccCCCCCCHHHHHHHcCccc-cccccccCCCe
Confidence 99999999999999999999999999999999965678899999999999999999999999999999 99999999999
Q ss_pred eecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHhcc
Q 016049 234 YYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDS 313 (396)
Q Consensus 234 ~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~ 313 (396)
|++.|.+++|+++|++|+++.+.++||++|.||.|++.++|.+|||+++|.+ +||+++++++||+||+|+|++++|+++
T Consensus 159 ~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~-emy~~~d~~l~L~Pt~e~~~~~~~~~~ 237 (421)
T 1ses_A 159 YALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRD-QVWAIAETDLYLTGTAEVVLNALHSGE 237 (421)
T ss_dssp CCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGG-GSCBBTTSSEEECSSTHHHHHHTTTTC
T ss_pred EEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCch-hcEEEcCCeEEEeecCcHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999864 899999889999999999999999999
Q ss_pred ccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc--cchHHHHHHHHHHHHHHHHHcCCcEEEEe
Q 016049 314 ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP--EESDSYHEELIRIEEDLYSSLGLHFKLLL 391 (396)
Q Consensus 314 ~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p--e~S~~~~ee~l~~~e~il~~LgLpyrvv~ 391 (396)
++++++||+|++++|+|||+|+|++|++++||+|+|||+|+|+|+||+| ++|++++++|+++++++|+.||||||++.
T Consensus 238 ~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~rvv~ 317 (421)
T 1ses_A 238 ILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVE 317 (421)
T ss_dssp EEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cccC
Q 016049 392 FLAE 395 (396)
Q Consensus 392 ~~t~ 395 (396)
+|++
T Consensus 318 l~t~ 321 (421)
T 1ses_A 318 VATG 321 (421)
T ss_dssp CCHH
T ss_pred ecCc
Confidence 9874
No 5
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=5.9e-76 Score=609.94 Aligned_cols=320 Identities=28% Similarity=0.495 Sum_probs=287.7
Q ss_pred cccchHHHhc----CHHHHHHHHHccCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCchh-------
Q 016049 73 AAIDFKWIRD----NKEAVSANIRNRNSNA-NLELVLELYEKMLNVQKEVDRLREERNAVANKMKGK-LEPSE------- 139 (396)
Q Consensus 73 ~mlD~~~ir~----n~e~v~~~l~~R~~~~-~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~-~~~~~------- 139 (396)
+|||+++||+ |||.|++++++|+.+. ++|+|++||++||++++++++|+++||++||+|+.+ +.+++
T Consensus 1 mmld~~~~r~~~g~n~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~ 80 (522)
T 3vbb_A 1 MVLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESV 80 (522)
T ss_dssp -CCCGGGSCGGGTCCHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCC
T ss_pred CCcCHHHHhccCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhh
Confidence 4899999999 9999999999999876 489999999999999999999999999999998642 11111
Q ss_pred ---HHH---H------------HHHHH-hHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC--CceeeeeeC
Q 016049 140 ---RQK---L------------IEEGK-NLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGED--CSIIRKTVG 198 (396)
Q Consensus 140 ---~~~---l------------~~~~~-~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee--~~~v~~~~g 198 (396)
.++ + +.+++ .|+++|+++++++.+++++++.+++.|||+|||+||+|.+| +|+++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~dn~~vr~~g 160 (522)
T 3vbb_A 81 PENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPISNDEDVDNKVERIWG 160 (522)
T ss_dssp CGGGCSSSSCCHHHHHTTCSSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHHGGGSCCCCCTTSCCCSCHHHHCEEEEEES
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcccCcEEEEEeC
Confidence 111 1 11112 37899999999999999999999999999999999999665 588999999
Q ss_pred CCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhc
Q 016049 199 NPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCG 278 (396)
Q Consensus 199 ~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG 278 (396)
+++.| +++||++||+++|||||+++++++|+||||+.|.|++|+++|++|+++.+.++||++|.||.|++.++|.+||
T Consensus 161 ~~~~~--~~rdH~eLg~~l~l~dfe~~~kvsGsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG 238 (522)
T 3vbb_A 161 DCTVR--KKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVA 238 (522)
T ss_dssp CSSCC--CSCCHHHHHHHTTCEECHHHHHHHSTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHS
T ss_pred CCCCC--CccCHHHHHHhcCcEecccccccCCcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcC
Confidence 98865 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccEEEeC-----------CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcce
Q 016049 279 FQPRGANTQVYSIEG-----------ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYR 347 (396)
Q Consensus 279 ~~p~~~~~q~y~i~~-----------~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~R 347 (396)
|+|.|.+ +||++++ +++||+||+|+|++++|+++++++++||+||+++|+|||+|+|++|++++||+|
T Consensus 239 ~l~~f~e-emy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~R 317 (522)
T 3vbb_A 239 QLSQFDE-ELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFR 317 (522)
T ss_dssp CCC-CCS-CCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSS
T ss_pred CcccCcc-cceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcce
Confidence 9999875 7999963 479999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeEEEeCCccc--hHHHHHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 348 VHQFSKLEMFVFCQPEE--SDSYHEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 348 vhQF~kvE~f~f~~pe~--S~~~~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+|||+|+|+|+||+|++ |++++++|++++++||+.||||||++.+||+
T Consensus 318 vhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tg 367 (522)
T 3vbb_A 318 VHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSG 367 (522)
T ss_dssp CSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred eeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCc
Confidence 99999999999999988 9999999999999999999999999999985
No 6
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=2.1e-75 Score=601.40 Aligned_cols=321 Identities=36% Similarity=0.611 Sum_probs=308.1
Q ss_pred ccchHHHhcCHHHHHHHHHccCC-c-cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCchhHHHHHHHHHh
Q 016049 74 AIDFKWIRDNKEAVSANIRNRNS-N-AN-LELVLELYEKMLNVQKEVDRLREERNAVANKMKG-KLEPSERQKLIEEGKN 149 (396)
Q Consensus 74 mlD~~~ir~n~e~v~~~l~~R~~-~-~~-~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-~~~~~~~~~l~~~~~~ 149 (396)
|||+++||+|+|.|++++++|+. + .+ +|+|+++|++||+++.++++|+++||++||+|+. ++.+++.++|++++++
T Consensus 1 mld~~~~r~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~ 80 (455)
T 2dq0_A 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSRE 80 (455)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHH
T ss_pred CCCHHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 89999999999999999999998 6 55 8999999999999999999999999999999986 4556778899999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC-CceeeeeeCCCCCCC--------------------CCCC
Q 016049 150 LKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGED-CSIIRKTVGNPSVFN--------------------FPVK 208 (396)
Q Consensus 150 lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee-~~~v~~~~g~~~~~~--------------------f~~~ 208 (396)
|+++|+++++++.+++++++.+++.|||++||+||+|.|| +|+++++||+++.|+ |+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~~e~~n~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (455)
T 2dq0_A 81 IVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPK 160 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCCCEEEEEcCCCCCccccchhhhcccccccccccccCccC
Confidence 9999999999999999999999999999999999999665 678899999998887 8999
Q ss_pred CHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCccc
Q 016049 209 DHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQV 288 (396)
Q Consensus 209 dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~ 288 (396)
||++||+++|||||+++++++|+|||++.|.+++|+++|++|+++.+.++||++|.||.|++.++|++|||+++|.+ +|
T Consensus 161 ~H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~-em 239 (455)
T 2dq0_A 161 LHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFED-VI 239 (455)
T ss_dssp CHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHH-TC
T ss_pred CHHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChH-hh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864 79
Q ss_pred EEEeCCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHH
Q 016049 289 YSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSY 368 (396)
Q Consensus 289 y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~ 368 (396)
|+++++++||+||+|+|++++|+++++++++||+|++++|+|||+|++++|++++||+|+|||+|+|+|+||+|++|+++
T Consensus 240 y~~~d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~ 319 (455)
T 2dq0_A 240 YKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEW 319 (455)
T ss_dssp CBBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHH
T ss_pred CeecCCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEecccC
Q 016049 369 HEELIRIEEDLYSSLGLHFKLLLFLAE 395 (396)
Q Consensus 369 ~ee~l~~~e~il~~LgLpyrvv~~~t~ 395 (396)
+++|+++++++|+.|||||+++.+|++
T Consensus 320 ~~e~l~~~~~il~~LGL~yrv~~~~~g 346 (455)
T 2dq0_A 320 HEKIIRNAEELFQELEIPYRVVNICTG 346 (455)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHcCCceEEEECCCc
Confidence 999999999999999999999999864
No 7
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=2.3e-74 Score=589.76 Aligned_cols=321 Identities=32% Similarity=0.571 Sum_probs=308.6
Q ss_pred ccchHHHhcCHHHHHHHHHccCCc-cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCchhHHHHHHHHHhH
Q 016049 74 AIDFKWIRDNKEAVSANIRNRNSN-AN-LELVLELYEKMLNVQKEVDRLREERNAVANKMKG-KLEPSERQKLIEEGKNL 150 (396)
Q Consensus 74 mlD~~~ir~n~e~v~~~l~~R~~~-~~-~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-~~~~~~~~~l~~~~~~l 150 (396)
|||+++||+|+|.|++++++|+.+ .+ +|+|+++|++||++++++++|+++||++||+|+. ++.+++.++++++++++
T Consensus 1 mld~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~ 80 (425)
T 2dq3_A 1 MIDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKEL 80 (425)
T ss_dssp CCCHHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHH
T ss_pred CCCHHHHHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHH
Confidence 899999999999999999999987 65 8999999999999999999999999999999986 34566778899999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC-CceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccC
Q 016049 151 KEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGED-CSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVS 229 (396)
Q Consensus 151 k~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee-~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvs 229 (396)
+++++++++++.+++++++.+++.|||++||+||+|.+| +|+++++||+++.|+|+++||++||+++|||||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g~~e~~n~~~~~~g~~~~~~f~~~~H~~l~~~l~l~d~~~~~~~~ 160 (425)
T 2dq3_A 81 KEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAKLS 160 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCccCcEEEEEeCCCCCCCCCcccHHHHHhhCCeEEeccccccc
Confidence 999999999999999999999999999999999999765 6789999999999999999999999999999999999999
Q ss_pred CcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHH
Q 016049 230 GSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGI 309 (396)
Q Consensus 230 G~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l 309 (396)
|.|||++.+.+++|+++|++|+++.+.++||++|.||.|++.++|.+|||++++.+ +||+++++++||+||+|+|++++
T Consensus 161 g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~-emy~~~~~~l~LrPt~e~~i~~~ 239 (425)
T 2dq3_A 161 GSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEE-DLYKCERDNLYLIPTAEVPLTNL 239 (425)
T ss_dssp CSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGG-GSCBCTTTCCEECSSTHHHHHGG
T ss_pred CCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChh-hheEecCCeEEEcCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999865 89999988999999999999999
Q ss_pred HhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEE
Q 016049 310 HMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKL 389 (396)
Q Consensus 310 ~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrv 389 (396)
|+++++++++||+||+++|+|||+|++++|++++||+|+|||+|+|+|+||+|++|++++++|+.+++++|+.|||||++
T Consensus 240 ~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rv 319 (425)
T 2dq3_A 240 YREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRV 319 (425)
T ss_dssp GTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccC
Q 016049 390 LLFLAE 395 (396)
Q Consensus 390 v~~~t~ 395 (396)
+.+|++
T Consensus 320 v~l~~g 325 (425)
T 2dq3_A 320 VELCTG 325 (425)
T ss_dssp EECCTT
T ss_pred EEecCC
Confidence 999875
No 8
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=1.1e-62 Score=515.15 Aligned_cols=252 Identities=33% Similarity=0.561 Sum_probs=244.4
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCCCHHHHhhhcCccc
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFD 221 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~d 221 (396)
.++++++.++++|+++++++.+++++++++++.|||++||+||+|+|++|+++++||+++.|+|+++||++||+++||||
T Consensus 177 ~l~~eV~pLk~eLk~lE~eL~e~e~eL~~lll~ipN~~~~~vp~g~e~~n~~~~~~g~~~~~~~~~~dH~~lg~~l~l~d 256 (536)
T 3err_A 177 DMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEEANREIKRVGGPPEFSFPPLDHVALMEKNGWWE 256 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCBC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHcCCcc
Confidence 35677889999999999999999999999999999999999999966688999999999999999999999999999999
Q ss_pred cccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecC
Q 016049 222 FDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGT 301 (396)
Q Consensus 222 f~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pT 301 (396)
+++++++|+||||+.|.|++|+++|++|+++.+.++||++|.||.|++.++|++|||+|+|.+ +||+++++++||+||
T Consensus 257 -~~~~k~~G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e-~mf~~~~~~~~L~PT 334 (536)
T 3err_A 257 -PRISQVSGSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRD-QVWAIAETDLYLTGT 334 (536)
T ss_dssp -TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGG-GCCEETTTTEEECSS
T ss_pred -cccccCCCCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChh-hceEecCCCEEEccC
Confidence 999999999999999999999999999999999999999999999999999999999999875 899999889999999
Q ss_pred CCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc--chHHHHHHHHHHHHHH
Q 016049 302 AEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE--ESDSYHEELIRIEEDL 379 (396)
Q Consensus 302 aEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe--~S~~~~ee~l~~~e~i 379 (396)
+|+|++++|+++++++++||+||+++|+|||+|+|++|++++||+|+|||+|+|+|+||+|+ +|++++++|++++++|
T Consensus 335 ~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i 414 (536)
T 3err_A 335 AEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEI 414 (536)
T ss_dssp THHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHcCCcEEEEecccC
Q 016049 380 YSSLGLHFKLLLFLAE 395 (396)
Q Consensus 380 l~~LgLpyrvv~~~t~ 395 (396)
|+.||||||++.+||+
T Consensus 415 ~~~LgLpyrvv~~~tg 430 (536)
T 3err_A 415 LRLLELPYRLVEVATG 430 (536)
T ss_dssp HHHTTCCEEEEECCTT
T ss_pred HHHcCCcEEEEEcCCc
Confidence 9999999999999986
No 9
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=5e-39 Score=334.84 Aligned_cols=209 Identities=17% Similarity=0.217 Sum_probs=162.8
Q ss_pred HHHHcCCCCCCCCCCCCCCCCceeeeeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHH
Q 016049 170 QEAQCIPNMTHPDVPVGGEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLIN 249 (396)
Q Consensus 170 ~~~~~lPN~~h~~vP~g~ee~~~v~~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~ 249 (396)
..-+.|||++||+||+|.+++ +.||+++. +|+ ++|++|++++|++|++.+ ++|+ |++.+.+++++++|++
T Consensus 10 ~~~~~~pn~~~~~vp~g~~~~----~~~~~~~~-~f~-~~~~~l~~~~glid~~~~--~~G~--~~~~P~g~~l~~~i~~ 79 (501)
T 1nj1_A 10 HSSGLVPRGSHMQKPIKKDPN----RYHGEKMT-EFS-EWFHNILEEAEIIDQRYP--VKGM--HVWMPHGFMIRKNTLK 79 (501)
T ss_dssp ----------------------------------CHH-HHHHHHHHHTTCEECCCS--STTC--CEECHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCcCCCCCCCC----ccccCCCC-Ccc-HhHHHHHHHCCCccccCC--CCce--EEECccHHHHHHHHHH
Confidence 345789999999999998765 88998776 776 899999999999999654 5665 5566667788999999
Q ss_pred HHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC-------CceEEecCCCHHHHHHHhccccCCCCCC
Q 016049 250 WTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG-------ADQCLIGTAEIPVGGIHMDSILSESLLP 321 (396)
Q Consensus 250 ~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~-------~~l~L~pTaEvpl~~l~~~~~l~~~~LP 321 (396)
++++.+.+ ||++|.+|.|++.++|.+ +|+++.|.+ +||++++ ++++|+||+|+|++++|++++.++++||
T Consensus 80 ~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~-emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LP 157 (501)
T 1nj1_A 80 ILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFED-EVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLP 157 (501)
T ss_dssp HHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTT-TCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCC
T ss_pred HHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCc-ceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCC
Confidence 99999999 999999999999999998 999887765 7999963 5799999999999999999999999999
Q ss_pred ceEEEeccccccCcCCCCCCCCCcceeeeEE-EeeEEE-eCCccchHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 016049 322 LKYAAFSHCFRTEAGAAGTATRGLYRVHQFS-KLEMFV-FCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLA 394 (396)
Q Consensus 322 lK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~-kvE~f~-f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t 394 (396)
+|++++|+|||+|++ +++||+|+|||+ |+|+++ +|+++++++++++|++++.++|+.|||||++...|.
T Consensus 158 lr~~q~g~~fR~E~~----~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~ 228 (501)
T 1nj1_A 158 MRFYQVVNTFRYETK----HTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPP 228 (501)
T ss_dssp EEEEEEEEEECCCCS----CCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCT
T ss_pred EEEEeecCEeeCCCC----CCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 999999999999996 478999999999 999985 689999999999999999999999999999988764
No 10
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=5.4e-35 Score=301.55 Aligned_cols=177 Identities=23% Similarity=0.293 Sum_probs=161.7
Q ss_pred CCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHH-HHCCCEeeecCCccchHHHHhhccC
Q 016049 202 VFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEV-IKRGFTPLTTPEIVRSSVVEKCGFQ 280 (396)
Q Consensus 202 ~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~-~~~Gy~ei~tP~lv~~~~~~~sG~~ 280 (396)
.++|+++||++||+++|||+|+.. ++|+ +++.+.++.++++|++|+++.+ .++||++|.||.|++.++|++||++
T Consensus 29 ~~~~~~rdH~~lg~~l~l~~~~~~--~~G~--~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~ 104 (460)
T 3uh0_A 29 SSATPATMTSMVSQRQDLFMTDPL--SPGS--MFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHW 104 (460)
T ss_dssp -CCCHHHHHHHHHHHHTCEECCTT--STTC--CEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCT
T ss_pred CCCCCCCCHHHHHHhCCCceeccC--CCCc--EEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCc
Confidence 356889999999999999999874 4555 5566666788999999999999 9999999999999999999999999
Q ss_pred CCCCCcccEEEeC-----CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEee
Q 016049 281 PRGANTQVYSIEG-----ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLE 355 (396)
Q Consensus 281 p~~~~~q~y~i~~-----~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE 355 (396)
+.+.+ +||++.+ ++++|+||+|.+++.+|++++.++++||+|++++|+|||+|++++ ++||+|+|||+|+|
T Consensus 105 ~~~~~-emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~---~~GL~R~ReF~q~d 180 (460)
T 3uh0_A 105 ENYAD-DMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGA---LSGLTRLRKFHQDD 180 (460)
T ss_dssp TTSGG-GSCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTT---CBTTTBCSEEEEEE
T ss_pred ccccc-ceEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCC---CCCceeeeeEEEee
Confidence 88865 8999864 579999999999999999999999999999999999999999863 78999999999999
Q ss_pred EEEeCCccchHHHHHHHHHHHHHHH-HHcCCc
Q 016049 356 MFVFCQPEESDSYHEELIRIEEDLY-SSLGLH 386 (396)
Q Consensus 356 ~f~f~~pe~S~~~~ee~l~~~e~il-~~LgLp 386 (396)
+|+||+|++++++++++++++.++| +.|||+
T Consensus 181 ~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~ 212 (460)
T 3uh0_A 181 GHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFV 212 (460)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred EEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999 999998
No 11
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=100.00 E-value=5.2e-33 Score=274.51 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=141.3
Q ss_pred cceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe------------------
Q 016049 231 SKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE------------------ 292 (396)
Q Consensus 231 ~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~------------------ 292 (396)
.|||.++|.+++|+++|++|+++ +.+.||++|.+|.|++.++|++|||+++|.+ .||.+.
T Consensus 54 ~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e-~mf~v~~~~~d~~e~~~ll~~~~~ 131 (346)
T 3mf2_A 54 DGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPN-LLGCVCGLHGTEREINAAVSRFDA 131 (346)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGG-GCEEEEEECSCHHHHHHHHHHHHT
T ss_pred CceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChh-hcceeecccccchhhhhhhhhhcc
Confidence 67999999999999999999999 8899999999999999999999999999986 799863
Q ss_pred ---------CCceEEecCCCHHHHHHHhcc-ccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc
Q 016049 293 ---------GADQCLIGTAEIPVGGIHMDS-ILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP 362 (396)
Q Consensus 293 ---------~~~l~L~pTaEvpl~~l~~~~-~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p 362 (396)
+.++||+||+|+|++++|+++ +++ +.|+||+++|+|||+|+ + +||+|||||+|+|+|+||+|
T Consensus 132 ~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~Ea-S-----~GL~RvhqF~kvE~v~~~tp 203 (346)
T 3mf2_A 132 GGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREP-S-----KHLDRLQSFRMREYVCIGTP 203 (346)
T ss_dssp TSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCC-C-----SSTTSCSEEEEEEEEEEESH
T ss_pred ccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcC-C-----CCCeeeeeeEEEEEEEEeCH
Confidence 237999999999999999986 666 34999999999999999 4 39999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 016049 363 EESDSYHEELIRIEEDLYSSLGLHFKLLLF 392 (396)
Q Consensus 363 e~S~~~~ee~l~~~e~il~~LgLpyrvv~~ 392 (396)
|+|.+++++|+++++++|+.||||||++.+
T Consensus 204 Eqs~~e~e~l~~~ae~il~~LgLpyrv~~~ 233 (346)
T 3mf2_A 204 DDVSDFRERWMVRAQAIARDLGLTFRVDYA 233 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEc
Confidence 999999999999999999999999999976
No 12
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.98 E-value=4.8e-33 Score=297.58 Aligned_cols=196 Identities=20% Similarity=0.377 Sum_probs=170.6
Q ss_pred CceeeeeeCCC----CCC--------CCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHH
Q 016049 190 CSIIRKTVGNP----SVF--------NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIK 257 (396)
Q Consensus 190 ~~~v~~~~g~~----~~~--------~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~ 257 (396)
+..+.+.||.. +.+ .++.+||+.||+++++++|+.. .+|+ |++.+.+++++++|++|+++.+.+
T Consensus 212 ~~~l~r~~g~~~~~~~~l~~~~~~~eea~~rdH~~lg~~l~l~~~~~~--~~G~--~~~lP~g~~l~~~l~~~~r~~~~~ 287 (642)
T 1qf6_A 212 NKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEE--APGM--VFWHNDGWTIFRELEVFVRSKLKE 287 (642)
T ss_dssp SCEEEEEEEEECSSHHHHHHHHHHHHHHHTTCHHHHHHHTTCEECCTT--STTC--CEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEeeeccccCchhHHhhhhhhhhccccCCHHHHHHhcCccccccC--CCCc--EEECCcHHHHHHHHHHHHHHHHHH
Confidence 34456788864 212 3467999999999999999874 5555 455555667889999999999999
Q ss_pred CCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCc
Q 016049 258 RGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEA 335 (396)
Q Consensus 258 ~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Ea 335 (396)
+||++|.||.|++.++|++|||++.+.+ +||..+ +++++|+||+|.+++.+|++++.++++||+|++++|+|||+|.
T Consensus 288 ~Gy~ev~tP~l~~~~l~~~sGh~~~~~~-~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~ 366 (642)
T 1qf6_A 288 YQYQEVKGPFMMDRVLWEKTGHWDNYKD-AMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEP 366 (642)
T ss_dssp TTCEECCCCSEEETHHHHHHSHHHHHGG-GCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCC
T ss_pred cCCEEEECCcCccHHHHhhcCccccccc-cceeeecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCC
Confidence 9999999999999999999999987765 799843 4679999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCC-cEEEEeccc
Q 016049 336 GAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGL-HFKLLLFLA 394 (396)
Q Consensus 336 g~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgL-pyrvv~~~t 394 (396)
++ .++||+|+|||+|+|+|+||+|++++++++++++++.++|+.||| +|++ .+++
T Consensus 367 ~g---~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lGl~~~~v-~l~~ 422 (642)
T 1qf6_A 367 SG---SLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVV-KLST 422 (642)
T ss_dssp GG---GCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCCCCEE-EEEC
T ss_pred Cc---cccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCceEE-EEec
Confidence 85 689999999999999999999999999999999999999999999 7887 4443
No 13
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.97 E-value=2.2e-32 Score=284.99 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=169.3
Q ss_pred eeeCCCCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHH
Q 016049 195 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVV 274 (396)
Q Consensus 195 ~~~g~~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~ 274 (396)
--||+++.-+|....| +|+.++||+|+ +. .++|+ |++.+.+++++++|++|+++.+.+.||++|.||.|++.++|
T Consensus 14 ~~~~~~~~~~f~~wy~-~l~~~aglid~-r~-~~~G~--~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~ 88 (518)
T 3ial_A 14 TFSLTKTRDTFADWFD-AIMDAAELVDR-RY-PVKGC--VVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFL 88 (518)
T ss_dssp CCCCCCCTTTHHHHHH-HHHHHTTCEET-TS-SSTTC--CEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHH
T ss_pred EEecCcccccccHHHH-HHHHHCCCccc-CC-CCCCe--EEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHH
Confidence 3478888878876666 89999999998 32 25665 55666677888999999999999999999999999999999
Q ss_pred H-hhccCCCCCCcccEEEeC-------CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcc
Q 016049 275 E-KCGFQPRGANTQVYSIEG-------ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLY 346 (396)
Q Consensus 275 ~-~sG~~p~~~~~q~y~i~~-------~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~ 346 (396)
. .+||++.|.+ +||++.+ ++++|+||+|.+++.+|++++.++++||+|++++|+|||+|+++ ++||+
T Consensus 89 ~k~sgh~~~f~~-emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~----~~GL~ 163 (518)
T 3ial_A 89 KKESDHIKGFEA-ECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKN----TKPLI 163 (518)
T ss_dssp TSSHHHHHHHGG-GCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCS----CBTTT
T ss_pred HhhcCCcccccc-cEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCC----CCCCc
Confidence 7 5899987764 7999864 47999999999999999999999999999999999999999875 68999
Q ss_pred eeeeEEEeeEEEe-CCccchHHHHHHHHHHHHHHH-HHcCCcEEEEeccc
Q 016049 347 RVHQFSKLEMFVF-CQPEESDSYHEELIRIEEDLY-SSLGLHFKLLLFLA 394 (396)
Q Consensus 347 RvhQF~kvE~f~f-~~pe~S~~~~ee~l~~~e~il-~~LgLpyrvv~~~t 394 (396)
|+|||+|+|+|+| |+++++++++++|++++.++| +.|||||+++.+|+
T Consensus 164 R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~~~~ 213 (518)
T 3ial_A 164 RVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVC 213 (518)
T ss_dssp BCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEECG
T ss_pred eeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeeecCh
Confidence 9999999999999 899999999999999999999 99999999998875
No 14
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=99.97 E-value=1.5e-31 Score=270.73 Aligned_cols=175 Identities=22% Similarity=0.396 Sum_probs=157.3
Q ss_pred CCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcc
Q 016049 208 KDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ 287 (396)
Q Consensus 208 ~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q 287 (396)
+||++||+++|||+|... .+|+. .+.+.++.++++|++++++.+.++||++|.||.|++.++|.+||+++.+.+ +
T Consensus 1 ~dh~~l~~~~~l~~~~~~--~~G~~--d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~-e 75 (401)
T 1evl_A 1 RDHRKIGKQLDLYHMQEE--APGMV--FWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD-A 75 (401)
T ss_dssp CCHHHHHHHTTCEECCTT--STTCC--EECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGG-G
T ss_pred CChHHHHHhCCceEecCC--CCcce--EECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhch-h
Confidence 589999999999999875 56664 444555677899999999999999999999999999999999999976654 7
Q ss_pred cEEEe--CCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccch
Q 016049 288 VYSIE--GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEES 365 (396)
Q Consensus 288 ~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S 365 (396)
||+++ +++++|+||+|.|++.++++++.++++||+|++++|+|||+|.++ ..+||+|+|||+|+|+++||+++++
T Consensus 76 m~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~---p~~Gl~R~reF~q~d~~~f~~~~~~ 152 (401)
T 1evl_A 76 MFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSG---SLHGLMRVRGFTQDDAHIFCTEEQI 152 (401)
T ss_dssp CCEEEETTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGG---GCBTTTBCSEEEEEEEEEEECGGGH
T ss_pred hEeEecCCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCc---ccccccccCcEEecceEEeCCHHHH
Confidence 99854 467999999999999999999999999999999999999999973 4789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCC-cEEEE
Q 016049 366 DSYHEELIRIEEDLYSSLGL-HFKLL 390 (396)
Q Consensus 366 ~~~~ee~l~~~e~il~~LgL-pyrvv 390 (396)
+++++++++++.++|+.||| +|++.
T Consensus 153 ~~e~~e~i~~~~~~~~~lgl~~~~~~ 178 (401)
T 1evl_A 153 RDEVNGCIRLVYDMYSTFGFEKIVVK 178 (401)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 99999999999999999999 78873
No 15
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.3e-31 Score=274.89 Aligned_cols=174 Identities=18% Similarity=0.163 Sum_probs=156.8
Q ss_pred HHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCccc
Q 016049 210 HFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQV 288 (396)
Q Consensus 210 H~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~ 288 (396)
+.+|++++||+|+- .++| +|++.+.++.++++|++|+++.+.++||++|.||.|++.++|++ +||++.|.+ +|
T Consensus 35 y~~l~~~~~lid~~---~~~G--~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~-em 108 (519)
T 4hvc_A 35 YSQVITKSEMIEYH---DISG--CYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAP-EV 108 (519)
T ss_dssp HHHHHHHTTCEEEC---SSTT--CEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGG-GC
T ss_pred HHHHHHHCCCeEec---CCCC--eEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccc-cc
Confidence 55999999999982 2556 46677777888999999999999999999999999999999997 899998764 79
Q ss_pred EEEeC-------CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eC
Q 016049 289 YSIEG-------ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FC 360 (396)
Q Consensus 289 y~i~~-------~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~ 360 (396)
|++.+ ++++|+||+|.+++.+|++++.++++||+|++++|+|||+|+++ ++||+|+|||+|+|+|+ +|
T Consensus 109 y~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~----~~Gl~R~ReF~q~e~h~~~~ 184 (519)
T 4hvc_A 109 AWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKH----PQPFLRTREFLWQEGHSAFA 184 (519)
T ss_dssp EEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSC----CBTTTBCSEEEEEEEEEEES
T ss_pred eEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCC----CCCCcceeEEEEeeEEEEec
Confidence 98863 25999999999999999999999999999999999999999763 58999999999999998 89
Q ss_pred CccchHHHHHHHHHHHHHHHHHc-CCcEEEEecc
Q 016049 361 QPEESDSYHEELIRIEEDLYSSL-GLHFKLLLFL 393 (396)
Q Consensus 361 ~pe~S~~~~ee~l~~~e~il~~L-gLpyrvv~~~ 393 (396)
+|+++++++++|++++.++|+.| ||||+++..+
T Consensus 185 ~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t 218 (519)
T 4hvc_A 185 TMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKT 218 (519)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecC
Confidence 99999999999999999999997 9999887654
No 16
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.97 E-value=8.4e-30 Score=265.45 Aligned_cols=178 Identities=19% Similarity=0.159 Sum_probs=159.2
Q ss_pred CCCCCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHH-HHHCCCEeeecCCccchHHHHhhc
Q 016049 200 PSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSE-VIKRGFTPLTTPEIVRSSVVEKCG 278 (396)
Q Consensus 200 ~~~~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~-~~~~Gy~ei~tP~lv~~~~~~~sG 278 (396)
++..+|. .+..+++.+.|+++ +++|.++|++.+.+++|+++|++|+++. +.+.||++|.+|.|++.++|++||
T Consensus 196 ~re~~f~-~~~~~ll~raG~i~-----~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SG 269 (522)
T 2cja_A 196 PMEHPFK-EDPTQAMMKEGWLK-----RGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSG 269 (522)
T ss_dssp CCCCCCC-SCHHHHHHHTTSEE-----ECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHT
T ss_pred ccCCCcc-hHHHHHHHHCCCee-----eeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcC
Confidence 4444444 45668999999996 3567788899999999999999999985 889999999999999999999999
Q ss_pred cCCCCCCcccEEEe---------------------------------CCceEEecCCCHHHHHHHhccccCCCCCCceEE
Q 016049 279 FQPRGANTQVYSIE---------------------------------GADQCLIGTAEIPVGGIHMDSILSESLLPLKYA 325 (396)
Q Consensus 279 ~~p~~~~~q~y~i~---------------------------------~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~ 325 (396)
|++.|.+ +||++. ++++||+||+|+|++.+|+++++++++||++++
T Consensus 270 h~~~F~d-emy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~ 348 (522)
T 2cja_A 270 HAKGVYP-EIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVF 348 (522)
T ss_dssp GGGTCGG-GCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEE
T ss_pred CcCcccc-ceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEE
Confidence 9999875 799983 257999999999999999999999999999999
Q ss_pred E-eccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHH-HHHHHHHHHcCCcEEE
Q 016049 326 A-FSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI-RIEEDLYSSLGLHFKL 389 (396)
Q Consensus 326 ~-~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l-~~~e~il~~LgLpyrv 389 (396)
+ +|+|||+|++ .++||+|+|||+|+|++.||+|+++++++++++ ..++.+++.|||| ++
T Consensus 349 q~ig~~FR~Epg----s~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~v 409 (522)
T 2cja_A 349 DRSGTSHRYESG----GIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-WR 409 (522)
T ss_dssp ECSSEEECCCSS----SCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-EE
T ss_pred EEcCceEeCCCC----CCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-EE
Confidence 9 9999999943 389999999999999999999999999999999 9999999999999 53
No 17
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.96 E-value=4.8e-30 Score=274.48 Aligned_cols=179 Identities=17% Similarity=0.263 Sum_probs=159.6
Q ss_pred CCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCC
Q 016049 205 FPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA 284 (396)
Q Consensus 205 f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~ 284 (396)
++.+||+.||+++|+|+|... ..+|+ +++.+.++++.++|++++++.+.++||++|.||.|++.++|+++|+++.+.
T Consensus 238 a~~rdhr~lg~~l~l~~~~~~-~~~G~--~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~ 314 (645)
T 1nyr_A 238 RKERDHRKIGKELELFTNSQL-VGAGL--PLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQ 314 (645)
T ss_dssp HHHTCHHHHHHHTTCEEEETT-TEEEE--EEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCT
T ss_pred hhhhhHHHHhhhcceEEeccc-CCCce--eEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccc
Confidence 457899999999999999872 14454 445555567789999999999999999999999999999999999987776
Q ss_pred CcccEEEe---C-CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC
Q 016049 285 NTQVYSIE---G-ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC 360 (396)
Q Consensus 285 ~~q~y~i~---~-~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~ 360 (396)
+ +||.+. + ++++|+||.|.+++.+|++...++++||+|++++|+|||+|.++ .++||+|+|||+|.|+++||
T Consensus 315 ~-~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~---~~~GL~R~ReF~Q~d~~~f~ 390 (645)
T 1nyr_A 315 E-DMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASG---AVSGLQRVRGMTLNDSHIFV 390 (645)
T ss_dssp T-SSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTT---TCBTTTBCSEEEEEEEEEEE
T ss_pred c-CcceeEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCc---cccCcceeeeEEEccEEEEc
Confidence 5 799863 4 67999999999999999999889999999999999999999985 57899999999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCC-cEEEE
Q 016049 361 QPEESDSYHEELIRIEEDLYSSLGL-HFKLL 390 (396)
Q Consensus 361 ~pe~S~~~~ee~l~~~e~il~~LgL-pyrvv 390 (396)
+++++.+++.+++.++.++|+.||| +|++.
T Consensus 391 ~~~~~~d~~~e~i~~~~~~l~~lGl~~~~~~ 421 (645)
T 1nyr_A 391 RPDQIKEEFKRVVNMIIDVYKDFGFEDYSFR 421 (645)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9999999999999999999999999 68763
No 18
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.96 E-value=8.9e-29 Score=260.97 Aligned_cols=179 Identities=18% Similarity=0.172 Sum_probs=157.6
Q ss_pred CCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCC
Q 016049 204 NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRG 283 (396)
Q Consensus 204 ~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~ 283 (396)
+.+.++|..|++. |+++. . .+|+. .+.+.+++++++|++++++.+.++||++|.||.|++.++|.++|+++.+
T Consensus 17 ~~~~~~h~~l~~~-g~~~~-~---~~G~~--~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~ 89 (572)
T 2j3l_A 17 DAEVLSHQILLRA-GYIRQ-V---AAGIY--SYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETY 89 (572)
T ss_dssp TCCSHHHHHHHHT-TSEEE-E---ETTEE--EECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHS
T ss_pred ccCCcCHHHHHhC-CCccc-c---CCCee--eeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCcccc
Confidence 4567899999985 88763 1 35654 4455556788999999999999999999999999999999999998877
Q ss_pred CCcccEEEeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC
Q 016049 284 ANTQVYSIEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC 360 (396)
Q Consensus 284 ~~~q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~ 360 (396)
.+ +||++.+ ++++|+||+|.+++.++++++.++++||+|++++|+|||+|.++ .+||+|+|||+|+|+++||
T Consensus 90 ~~-~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~----~~Gl~R~ReF~q~d~~~f~ 164 (572)
T 2j3l_A 90 GP-NLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRS----RSGLLRGREFIMKDGYSFH 164 (572)
T ss_dssp CT-TSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSC----CTGGGSCSEEEEEEEEEEE
T ss_pred ch-heEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCc----ccCccccceeEEeeeEEEc
Confidence 65 7999964 67999999999999999999889999999999999999999983 6899999999999999999
Q ss_pred C-ccchHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 016049 361 Q-PEESDSYHEELIRIEEDLYSSLGLHFKLLLFLA 394 (396)
Q Consensus 361 ~-pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t 394 (396)
. ++++++++.+|++++.++|+.|||+|+++..++
T Consensus 165 ~~~~~~~~e~~~~~~~~~~~~~~lgl~~~~~~~~~ 199 (572)
T 2j3l_A 165 ADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDG 199 (572)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence 9 578999999999999999999999999987653
No 19
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.95 E-value=6.5e-28 Score=249.28 Aligned_cols=172 Identities=16% Similarity=0.191 Sum_probs=147.5
Q ss_pred CCCHH--HHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCC
Q 016049 207 VKDHF--QLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGA 284 (396)
Q Consensus 207 ~~dH~--eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~ 284 (396)
++||+ +||++++++ .++|+. .+.+.++.++++|++++++.+.++||++|.||.|++.++|.++|+++.+.
T Consensus 21 ~~~h~~~~lg~~~~~~------~~~G~~--d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~ 92 (471)
T 3a32_A 21 KPDSRVPVFNREFATF------TGAGVP--LFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYR 92 (471)
T ss_dssp CTTSBCTTTCSBTHHH------HCTTCC--CBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGG
T ss_pred cCCchhHHHHHhcCCc------cCCEEE--EECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccc
Confidence 34554 555555544 246665 34444456789999999999999999999999999999999999988776
Q ss_pred CcccEEEe--CCceEEecCCCHHHHHHHhccccCCC---CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe
Q 016049 285 NTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSES---LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF 359 (396)
Q Consensus 285 ~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~---~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f 359 (396)
+ +||+++ ++.++|+||+|.+++.++++++.+++ +||+|++++|+|||+|.++ .++||+|+|||+|+|+++|
T Consensus 93 ~-emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~---~~~Gl~R~REF~Q~~~e~f 168 (471)
T 3a32_A 93 N-NMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSG---SIYGLLRVRGFTQDDAHII 168 (471)
T ss_dssp G-GSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGG---GCBTTTBCSEEEEEEEEEE
T ss_pred c-ceEEEecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCc---ccccceeEEEEEECCeEEE
Confidence 4 799985 35799999999999999999988887 9999999999999999986 3689999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHHHH-cCC-----cEEEE
Q 016049 360 CQPEESDSYHEELIRIEEDLYSS-LGL-----HFKLL 390 (396)
Q Consensus 360 ~~pe~S~~~~ee~l~~~e~il~~-LgL-----pyrvv 390 (396)
|+++++.+++.+++.++.++|+. ||| +|++.
T Consensus 169 ~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~ 205 (471)
T 3a32_A 169 VPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVR 205 (471)
T ss_dssp EEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEE
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEE
Confidence 99999999999999999999999 999 58765
No 20
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.95 E-value=9.4e-28 Score=247.49 Aligned_cols=181 Identities=18% Similarity=0.223 Sum_probs=157.9
Q ss_pred CCCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCC
Q 016049 203 FNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQP 281 (396)
Q Consensus 203 ~~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p 281 (396)
.+| .+.|.+|+.+.||+|++.+ ++|+.+ |+| .++.++++|++++.+.+.++||++|.||.|++.++|.+ +|++.
T Consensus 5 ~~~-~~~~~~l~~~~~li~~~~~--~~G~~d-~lP-~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~ 79 (459)
T 1nj8_A 5 LEF-SEWYSDILEKAEIYDVRYP--IKGCGV-YLP-YGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIK 79 (459)
T ss_dssp CCH-HHHHHHHHHHTSSCBCCST--TSSCCB-BCH-HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSG
T ss_pred cCc-cHhHHHHHHhCCCccccCC--CCceEE-ECC-hHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCccc
Confidence 355 4679999999999999643 678753 444 44567899999999999999999999999999999985 99996
Q ss_pred CCCCcccEEEe-------CCceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEE-E
Q 016049 282 RGANTQVYSIE-------GADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFS-K 353 (396)
Q Consensus 282 ~~~~~q~y~i~-------~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~-k 353 (396)
.+. ++||++. +++++|+||+|.+++.+|++++.++++||+|++++|+|||+|.+ +++||+|+|||+ |
T Consensus 80 ~~~-~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~----~~rGl~R~REF~qq 154 (459)
T 1nj8_A 80 GFE-DEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK----HTRPLIRLREIMTF 154 (459)
T ss_dssp GGG-GGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS----CCBTTTBCSBCSCE
T ss_pred ccc-hhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccC----CCCCceEeeeeecc
Confidence 665 4799986 34699999999999999999999999999999999999999987 267999999999 9
Q ss_pred eeEEE-eCCccchHHHHHHHHHHHHHHHHHcCCcEEEEecc
Q 016049 354 LEMFV-FCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFL 393 (396)
Q Consensus 354 vE~f~-f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~ 393 (396)
.|+++ +|+++++++++.+++.++.++|+.|||+|++...+
T Consensus 155 ~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~~~~~~~ 195 (459)
T 1nj8_A 155 KEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRP 195 (459)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEeecC
Confidence 99997 58888899999999999999999999998876543
No 21
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.94 E-value=4.9e-27 Score=243.20 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=150.1
Q ss_pred CCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCC
Q 016049 204 NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPR 282 (396)
Q Consensus 204 ~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~ 282 (396)
+| ...|.+|+++.|++++.. ++|+.+ |+|. ++.++++|++++.+.+.++||++|.||.|++.++|.+ +||+..
T Consensus 13 ~f-~~~~~~l~~~~~li~~~~---~~G~~d-~lP~-g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~ 86 (477)
T 1hc7_A 13 DF-SEWYLEVIQKAELADYGP---VRGTIV-VRPY-GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEG 86 (477)
T ss_dssp HH-HHHHHHHHHHTTSEEECS---STTCEE-ECHH-HHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------
T ss_pred Cc-hHHHHHHHHHCCCeeecC---CCCeEE-ECcc-HHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccc
Confidence 45 357999999999999864 678753 4444 4567799999999999999999999999999999987 999887
Q ss_pred CCCcccEEEeC-------CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEee
Q 016049 283 GANTQVYSIEG-------ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLE 355 (396)
Q Consensus 283 ~~~~q~y~i~~-------~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE 355 (396)
+.+ +||++.+ ++++|+||+|.+++.+|++++.++++||+|++++|+|||+|.+ ++||+|+|||+|.|
T Consensus 87 f~~-emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~-----~rGl~R~REF~q~d 160 (477)
T 1hc7_A 87 FSP-ELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-----TRPFLRTSEFLWQE 160 (477)
T ss_dssp CCT-TCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-----CBTTTBCSEEEEEE
T ss_pred ccc-ceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCC-----CCCcceeEEEEEcc
Confidence 765 7999863 4799999999999999999999999999999999999999987 46999999999999
Q ss_pred EEE-eCCccchHHHHHHHHHHHHHHH-HHcCCcEEEEecc
Q 016049 356 MFV-FCQPEESDSYHEELIRIEEDLY-SSLGLHFKLLLFL 393 (396)
Q Consensus 356 ~f~-f~~pe~S~~~~ee~l~~~e~il-~~LgLpyrvv~~~ 393 (396)
+++ +|+++++++++..|++++.++| +.|||||++...+
T Consensus 161 ~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~~~~~~~~ 200 (477)
T 1hc7_A 161 GHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKT 200 (477)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 999 6888899999999999999999 8999998876543
No 22
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.93 E-value=8.6e-26 Score=232.65 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=152.7
Q ss_pred CCCCCCHHHHhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCC
Q 016049 204 NFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRG 283 (396)
Q Consensus 204 ~f~~~dH~eLg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~ 283 (396)
+.+.++|..|++. |+++. . .+|+.. |+|. ++++.++|++++++.+.++||++|.||.|++.++|.++|++..+
T Consensus 37 ~a~~~~h~ll~r~-g~i~~-~---~~G~~d-~lP~-g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~ 109 (458)
T 2i4l_A 37 EAEIVSHRLMLRA-GMLRQ-E---AAGIYA-WLPL-GHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAY 109 (458)
T ss_dssp TCCSHHHHHHHHT-TCEEE-E---ETTEEE-ECHH-HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHS
T ss_pred hcCcchHHHHhhc-CCeec-c---CCcceE-ECCC-HHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCcccc
Confidence 3467899988876 77753 2 467653 4444 45677999999999999999999999999999999999987666
Q ss_pred CCcccEEEeC---CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC
Q 016049 284 ANTQVYSIEG---ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC 360 (396)
Q Consensus 284 ~~~q~y~i~~---~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~ 360 (396)
.+ +||++.+ ++++|+||+|...+.++++.+.++++||+|++++|+|||+|..+ ..||+|+|||+|+|+++||
T Consensus 110 ~~-em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p----~~Gl~R~REF~q~d~~~f~ 184 (458)
T 2i4l_A 110 GP-EMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRP----RFGVMRGREFLMKDAYSFD 184 (458)
T ss_dssp CT-TSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSC----BTGGGBCSEEEEEEEEEEE
T ss_pred cc-ceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCC----CCCcccccceEEeEEEEEE
Confidence 54 7999974 57999999999999999998889999999999999999999653 5799999999999999999
Q ss_pred C-ccchHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 016049 361 Q-PEESDSYHEELIRIEEDLYSSLGLHFKLLLFLA 394 (396)
Q Consensus 361 ~-pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t 394 (396)
. ++++++++..|++.+.++|+.|||+|+++...+
T Consensus 185 ~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~~~~~ 219 (458)
T 2i4l_A 185 VDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAET 219 (458)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEccc
Confidence 4 567888899999999999999999999886543
No 23
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.92 E-value=2.2e-25 Score=232.33 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=147.2
Q ss_pred CHHHHhhhcCcccccccc--ccCCcceeecchHHHHHHHHHHHHHHHHHH--HCCCEeeecCCccchHHHHhhccCCCCC
Q 016049 209 DHFQLGKALDIFDFDAAA--EVSGSKFYYLKNEAVMLEMGLINWTLSEVI--KRGFTPLTTPEIVRSSVVEKCGFQPRGA 284 (396)
Q Consensus 209 dH~eLg~~l~l~df~~~a--kvsG~rf~~l~g~~a~Le~aLi~~~~d~~~--~~Gy~ei~tP~lv~~~~~~~sG~~p~~~ 284 (396)
.|++|+.+.|+|...... .++| +|.+.+.++++.++|++++++.+. +.||.+|.||.|++.++|++|||++.|.
T Consensus 7 ~~~~l~~r~g~i~~~~ei~~~~~G--~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~ 84 (505)
T 1ati_A 7 ELVALCKRRGFIFQSSEIYGGLQG--VYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFA 84 (505)
T ss_dssp HHHHHHHHTTSEEETTGGGTCCTT--CEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCE
T ss_pred HHHHHHHHCCCEEcchhhcCCCCC--cceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcC
Confidence 588999999998643211 1355 455555667888999999999998 8999999999999999999999998875
Q ss_pred CcccEEE-------------------------------------------e-----------------------------
Q 016049 285 NTQVYSI-------------------------------------------E----------------------------- 292 (396)
Q Consensus 285 ~~q~y~i-------------------------------------------~----------------------------- 292 (396)
+ .||++ .
T Consensus 85 d-~m~~~~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~ 163 (505)
T 1ati_A 85 D-PMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPR 163 (505)
T ss_dssp E-EEEEC--------------------------------------------------------------------CCCCE
T ss_pred c-cceeccccccccchhhhhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccc
Confidence 4 45542 1
Q ss_pred ----------------CCceEEecCCCHHHHHHHhccccCC-CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEee
Q 016049 293 ----------------GADQCLIGTAEIPVGGIHMDSILSE-SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLE 355 (396)
Q Consensus 293 ----------------~~~l~L~pTaEvpl~~l~~~~~l~~-~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE 355 (396)
+..++|+|+.+.++.-.+.+.+.++ ++||+|++++|+|||+|+++ ..||+|+|||+|+|
T Consensus 164 ~fnlmf~t~~gpt~ee~~~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~p----r~GL~R~REF~q~d 239 (505)
T 1ati_A 164 YFNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITP----RNFIFRVREFEQME 239 (505)
T ss_dssp EEECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSC----CTGGGSCSEEEEEE
T ss_pred hhhhhhhcccCCccccccceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCC----CCCCCcccceEEee
Confidence 1235788888888766666677777 89999999999999999874 46999999999999
Q ss_pred EEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Q 016049 356 MFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLFLA 394 (396)
Q Consensus 356 ~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~~t 394 (396)
++.||+|+++.+++.+++..+.++|+.|||+|+.+.+++
T Consensus 240 ~~~f~~~e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~~~ 278 (505)
T 1ati_A 240 IEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQ 278 (505)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 999999999999999999999999999999976665543
No 24
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.87 E-value=6.7e-22 Score=200.46 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=120.8
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh--ccCCCCCCcccEEEe---CCceEEecCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC--GFQPRGANTQVYSIE---GADQCLIGTA 302 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s--G~~p~~~~~q~y~i~---~~~l~L~pTa 302 (396)
.+|+++ |+|. +++++++|++++++.+.++||++|.||.|++.++|.++ |+++.+.+ +||++. ++.++|+||+
T Consensus 5 ~~G~~~-~~p~-~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~-~m~~~~D~~g~~~~Lrp~~ 81 (420)
T 1qe0_A 5 PRGTQD-ILPE-DSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQK-EMYTFKDKGDRSITLRPEG 81 (420)
T ss_dssp CTTCCC-BCHH-HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC------------CCEEECHHHHCCEEECSCS
T ss_pred CCcccc-cCHH-HHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhh-heEEEEcCCCCEEEeCCCC
Confidence 578764 4444 45677999999999999999999999999999999988 78776654 799996 4689999999
Q ss_pred CHHHHHHHhccccCC-CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHH
Q 016049 303 EIPVGGIHMDSILSE-SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYS 381 (396)
Q Consensus 303 Evpl~~l~~~~~l~~-~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~ 381 (396)
++|++.+++++..++ ++||+|++++|+|||+|.++.| |+|||+|+++++||.+++..+ .+++.++.++|+
T Consensus 82 t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~g-------R~reF~q~~~e~~~~~~~~~d--~e~i~~~~~~l~ 152 (420)
T 1qe0_A 82 TAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKG-------RYRQFNQFGVEAIGAENPSVD--AEVLAMVMHIYQ 152 (420)
T ss_dssp HHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------------CCEEEEEEEEEESCCCHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCC-------CcccEEEeeEEEECCCCchhH--HHHHHHHHHHHH
Confidence 999999999888888 8999999999999999977644 899999999999999875444 789999999999
Q ss_pred HcCCc-EEEEe
Q 016049 382 SLGLH-FKLLL 391 (396)
Q Consensus 382 ~LgLp-yrvv~ 391 (396)
.|||+ |++..
T Consensus 153 ~lgl~~~~i~l 163 (420)
T 1qe0_A 153 SFGLKHLKLVI 163 (420)
T ss_dssp HTTCCCEEEEE
T ss_pred HcCCCceEEEE
Confidence 99998 77653
No 25
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.86 E-value=7.3e-22 Score=202.55 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=111.9
Q ss_pred ecchHHHHHHHHHHHHHHH-HHHHCC-CEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEec-CCCHHHHHHHh
Q 016049 235 YLKNEAVMLEMGLINWTLS-EVIKRG-FTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIG-TAEIPVGGIHM 311 (396)
Q Consensus 235 ~l~g~~a~Le~aLi~~~~d-~~~~~G-y~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~p-TaEvpl~~l~~ 311 (396)
++.+.|..|.+.|+++++. ...+.| +.+|.||. .++|+.|||+.+|. ++|+| |++.++.++..
T Consensus 98 ~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~~~-----------~~LRPeTaqg~~~nfk~ 163 (459)
T 3ikl_A 98 GFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPGPLLPGDSAFR-----------GGLRENLLHGALEHYVN 163 (459)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCSCCCSSCSCCT-----------TB-CSCSHHHHHHHTTT
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---ccccccCcchhhhc-----------ceECCCCChhHHHHHhh
Confidence 3344445678999985555 445566 77799999 56699999997764 68999 78888887654
Q ss_pred ccccCCC-CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc---E
Q 016049 312 DSILSES-LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH---F 387 (396)
Q Consensus 312 ~~~l~~~-~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp---y 387 (396)
. ..+++ +||++++++|+|||+|+|. +...+||+|+|||+|+|++.||+|++++++++.+++.+..+|+.|||+ |
T Consensus 164 ~-~~s~r~~LP~~iaqig~~FR~E~g~-~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~~~~ 241 (459)
T 3ikl_A 164 C-LDLVNKRLPYGLAQIGVCFHPVFDT-KQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNF 241 (459)
T ss_dssp T-TGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSGGGE
T ss_pred h-hhhccccCCeEEEEEeeeeeccccc-ccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCChhhE
Confidence 4 44565 9999999999999999852 124579999999999999999999999999999999999999999998 9
Q ss_pred EEEecccC
Q 016049 388 KLLLFLAE 395 (396)
Q Consensus 388 rvv~~~t~ 395 (396)
|+.+++.+
T Consensus 242 r~~~~~~e 249 (459)
T 3ikl_A 242 SSSDCQDE 249 (459)
T ss_dssp EEEEECCS
T ss_pred EEeecCch
Confidence 99988654
No 26
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.82 E-value=4.7e-20 Score=190.44 Aligned_cols=151 Identities=20% Similarity=0.208 Sum_probs=126.6
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh-ccCCCCCCcccEEEe----CCceEEecCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC-GFQPRGANTQVYSIE----GADQCLIGTA 302 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s-G~~p~~~~~q~y~i~----~~~l~L~pTa 302 (396)
++|+++ |+|.+. .+++.|++++.+.+.++||++|.||.|++.++|.++ |+......++||++. ++.++|+|+.
T Consensus 35 ~~G~~d-~lP~~~-~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~ 112 (467)
T 4e51_A 35 VKGMND-ILPQDA-GLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPEN 112 (467)
T ss_dssp CTTCCC-BCHHHH-HHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCS
T ss_pred CCCcee-eCHHHH-HHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCccc
Confidence 689885 566654 567999999999999999999999999999999988 983321224799986 4569999999
Q ss_pred CHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 303 EIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 303 Evpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
++|+++++....+++ ++|+|++++|+|||+|.++.| |+|||+|++.++||.++...+ .|++.++.++|+.
T Consensus 113 t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~~g-------R~ReF~Q~d~ei~g~~~~~ad--aEvi~l~~~~l~~ 182 (467)
T 4e51_A 113 TAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQRG-------RYRQFHQVGVEALGFAGPDAD--AEIVMMCQRLWED 182 (467)
T ss_dssp HHHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC----------CCSEEEEEEEEEETCCCSHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccc-CCCEEEEEEccEEccCCCCCC-------CcCceEEEEEEEEeCCChHHH--HHHHHHHHHHHHH
Confidence 999999999887777 699999999999999988765 899999999999998866543 6899999999999
Q ss_pred cCCc-EEEE
Q 016049 383 LGLH-FKLL 390 (396)
Q Consensus 383 LgLp-yrvv 390 (396)
||++ |++.
T Consensus 183 lGl~~~~i~ 191 (467)
T 4e51_A 183 LGLTGIKLE 191 (467)
T ss_dssp HTCCCEEEE
T ss_pred cCCCceEEE
Confidence 9995 7654
No 27
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.79 E-value=7.1e-19 Score=178.39 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=128.5
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh-cc-CCCCCCcccEEEeC---CceEEecCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC-GF-QPRGANTQVYSIEG---ADQCLIGTA 302 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s-G~-~p~~~~~q~y~i~~---~~l~L~pTa 302 (396)
.+|++. |+|.+.. +.+.|++.+.+.+.++||++|.||.|.+.++|.++ |+ +..+. ++||++.+ +.++|+|+.
T Consensus 6 ~~G~~d-~lP~~~~-~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~-~em~~~~D~~g~~l~Lrpd~ 82 (421)
T 1h4v_B 6 VRGTKD-LFGKELR-MHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVR-KEMFTFQDRGGRSLTLRPEG 82 (421)
T ss_pred CCCCCC-cCHHHHH-HHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccc-cceEEEECCCCCEEeeCCcc
Confidence 578885 6776654 46899999999999999999999999999999987 87 44333 47999964 579999999
Q ss_pred CHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 303 EIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 303 Evpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
++|++.++..+..+++++|+|++++++|||+|.++.| |.|||+|.+.++|+.++... ..+++.++.++|+.
T Consensus 83 t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~g-------R~REf~Q~g~e~~g~~~~~a--d~e~i~~~~~~l~~ 153 (421)
T 1h4v_B 83 TAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG-------RYRQFHQVNYEALGSENPIL--DAEAVVLLYECLKE 153 (421)
T ss_pred hHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCC-------CcccEEEccEEEECCCChhh--hHHHHHHHHHHHHH
Confidence 9999999987766778999999999999999977644 89999999999999875432 35899999999999
Q ss_pred cCCc-EEEEe
Q 016049 383 LGLH-FKLLL 391 (396)
Q Consensus 383 LgLp-yrvv~ 391 (396)
||++ |++..
T Consensus 154 lgl~~~~i~i 163 (421)
T 1h4v_B 154 LGLRRLKVKL 163 (421)
T ss_pred cCCCceEEEE
Confidence 9997 77653
No 28
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.78 E-value=3.2e-19 Score=191.94 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=133.1
Q ss_pred CCHHHHhhhcCccccccc--cccCCcceeecchHHHHHHHHHHHHHHHHHH-HCCCEeeecCCccchHHHHhhccCCCCC
Q 016049 208 KDHFQLGKALDIFDFDAA--AEVSGSKFYYLKNEAVMLEMGLINWTLSEVI-KRGFTPLTTPEIVRSSVVEKCGFQPRGA 284 (396)
Q Consensus 208 ~dH~eLg~~l~l~df~~~--akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~-~~Gy~ei~tP~lv~~~~~~~sG~~p~~~ 284 (396)
..-.+|+.+.|++..... .-++|+.+ |+|. |..+.+.|++++++.+. ..||.+|.+|.|.+.++|+.|||+..|.
T Consensus 68 ~~~~~l~~r~gf~~~~~eiy~g~~G~~d-~lP~-G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~ 145 (693)
T 2zt5_A 68 AKMEDTLKRRFFYDQAFAIYGGVSGLYD-FGPV-GCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFA 145 (693)
T ss_dssp HHHHHHHHHTTSEEETTGGGTCCTTCEE-ECHH-HHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCE
T ss_pred HHHHHHHHhCCCcccchhhcCCCCCeEE-ECCC-hHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCccccc
Confidence 356689999998854321 11356543 4444 45677999999999987 5699999999999999999999987765
Q ss_pred C--------cccEEE-----------------------------------------------------------------
Q 016049 285 N--------TQVYSI----------------------------------------------------------------- 291 (396)
Q Consensus 285 ~--------~q~y~i----------------------------------------------------------------- 291 (396)
+ .++|++
T Consensus 146 d~m~~~~~~~e~yr~D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fn 225 (693)
T 2zt5_A 146 DFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFN 225 (693)
T ss_dssp EEEEEBSSSCCEEEHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEE
T ss_pred ccceeeccCCceeeccHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhh
Confidence 4 123331
Q ss_pred ----------eCCceEEecCCCHHHHHHHhccccC-CCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC
Q 016049 292 ----------EGADQCLIGTAEIPVGGIHMDSILS-ESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC 360 (396)
Q Consensus 292 ----------~~~~l~L~pTaEvpl~~l~~~~~l~-~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~ 360 (396)
.+...||+|....++.-.|.....+ +++||++++++|+|||+|..+ ..||+|+|||+|.|+++||
T Consensus 226 lmf~t~igp~~~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisP----r~GLlR~REF~q~d~e~F~ 301 (693)
T 2zt5_A 226 LMFKTFIGPGGNMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISP----RSGLIRVREFTMAEIEHFV 301 (693)
T ss_dssp CCCEEECSSSSSSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSC----CSGGGSCSEEEEEEEEEEE
T ss_pred eeeeccccCCCCcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCC----CCCCccceeeEEccceEEe
Confidence 1235788887777765555544433 689999999999999999765 4699999999999999999
Q ss_pred Cccch------------------------------------------HHHHHHHHHHHHHHHHHcCCc
Q 016049 361 QPEES------------------------------------------DSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 361 ~pe~S------------------------------------------~~~~ee~l~~~e~il~~LgLp 386 (396)
.|++. .+++..++..+.++|..||++
T Consensus 302 ~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~ 369 (693)
T 2zt5_A 302 DPSEKDHPKFQNVADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGIS 369 (693)
T ss_dssp CTTCCCCTTGGGTTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CcchhcchhHHHHHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcC
Confidence 99765 255777999999999999996
No 29
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.78 E-value=2.6e-18 Score=175.22 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=125.1
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
.+|+++ |+|.+.. +.+.|++.+++.+.++||++|.||.|.+.++|.+ +|+ .+ .++||++.+ +.++|+|+.+
T Consensus 9 ~~G~~d-~lP~~~~-~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~-~~em~~~~D~~g~~l~LrPd~t 83 (434)
T 1wu7_A 9 IRGFRD-FYPEDMD-VEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--EL-LQQTYSFVDKGGREVTLIPEAT 83 (434)
T ss_dssp CTTCCC-BCHHHHH-HHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TG-GGGSCEEECTTSCEEEECSCSH
T ss_pred CCCCCc-CCHHHHH-HHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--cc-ccceEEEECCCCCEEEeCCCCh
Confidence 578885 6776654 4689999999999999999999999999999997 687 22 347999964 5799999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
+|+++++... -++ ++|+|++++|+|||+|.++.| |.|||+|.+.++|+.++... ..+++.++.++|+.|
T Consensus 84 ~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~erp~~g-------R~REF~Q~d~ei~g~~~~~a--d~E~i~~~~~~l~~l 152 (434)
T 1wu7_A 84 PSTVRMVTSR-KDL-QRPLRWYSFPKVWRYEEPQAG-------RYREHYQFNADIFGSDSPEA--DAEVIALASSILDRL 152 (434)
T ss_dssp HHHHHHHTTC-TTC-CSSEEEEECCEEECCCCSCSS-------CCSEEEEEEEEEESCCSHHH--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc-CCC-CCCeEEEEEcCeecCCCCCCC-------CccceEEeeEEEEcCCChHh--hHHHHHHHHHHHHHc
Confidence 9999999876 444 799999999999999977654 89999999999999876432 357899999999999
Q ss_pred CCc--EEEEe
Q 016049 384 GLH--FKLLL 391 (396)
Q Consensus 384 gLp--yrvv~ 391 (396)
|++ |++..
T Consensus 153 gl~~~~~i~l 162 (434)
T 1wu7_A 153 GLQDIYEIRI 162 (434)
T ss_dssp TTTTSEEEEE
T ss_pred CCCCceEEEE
Confidence 997 87754
No 30
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.77 E-value=5e-18 Score=168.92 Aligned_cols=148 Identities=11% Similarity=0.132 Sum_probs=119.8
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh--ccCCCCCCcccEEEeC---CceEEecCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC--GFQPRGANTQVYSIEG---ADQCLIGTA 302 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s--G~~p~~~~~q~y~i~~---~~l~L~pTa 302 (396)
.+|++. |+|.+.. +.+.+++.+.+.+.++||++|.||.|.+.++|.++ |++.... ++||++.+ +.++|+|..
T Consensus 25 ~~G~~d-~lP~~~~-~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~-~~my~~~D~~g~~l~LRpd~ 101 (344)
T 1z7m_A 25 PEESAE-MTLNQVK-SLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQ-EKMFQFIKHEGQSITLRYDF 101 (344)
T ss_dssp CTTCCC-CCHHHHH-HHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCT-TSCCEEECTTCCEEEECCCS
T ss_pred CCCccc-CCHHHHH-HHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCcccccc-ccEEEEECCCCCEEecCCCC
Confidence 579885 6777654 46899999999999999999999999999999986 7665444 37999864 579999999
Q ss_pred CHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 303 EIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 303 Evpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
++|++.++... +.++|+|++++|+|||+|.++.| |.|||+|++.++|+.++...+ .|++.++.++|+.
T Consensus 102 T~~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p~~g-------R~REF~Q~g~ei~g~~~~~aD--aEvi~l~~~~l~~ 169 (344)
T 1z7m_A 102 TLPLVRLYSQI---KDSTSARYSYFGKIFRKEKRHKG-------RSTENYQIGIELFGESADKSE--LEILSLALQVIEQ 169 (344)
T ss_dssp HHHHHHHHHTC---CSCCCEEEEEEEECCCCCC--------------CCEEEEEEEESSCHHHHH--HHHHHHHHHHHHH
T ss_pred cHHHHHHHHhc---CCCCCeEEEEECcEEccCCCCCC-------CcceeEEEEEEEEcCCCcHHH--HHHHHHHHHHHHH
Confidence 99999998866 56799999999999999987655 899999999999997653222 5899999999999
Q ss_pred cCCc-EEEE
Q 016049 383 LGLH-FKLL 390 (396)
Q Consensus 383 LgLp-yrvv 390 (396)
||++ |++.
T Consensus 170 lgl~~~~i~ 178 (344)
T 1z7m_A 170 LGLNKTVFE 178 (344)
T ss_dssp HTCSSEEEE
T ss_pred CCCCcEEEE
Confidence 9997 7654
No 31
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.77 E-value=2.6e-18 Score=174.31 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=125.5
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhh-cc-CCCCCCcccEEEeC---CceEEecCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKC-GF-QPRGANTQVYSIEG---ADQCLIGTA 302 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~s-G~-~p~~~~~q~y~i~~---~~l~L~pTa 302 (396)
.+|++. |+|.+.. +.+.|++.+++.+.++||++|.||.|.+.++|.++ |+ +..+. ++||++.+ +.++|+|+.
T Consensus 7 ~~G~~d-~lP~~~~-~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~-~em~~~~D~~g~~l~Lrpd~ 83 (423)
T 1htt_A 7 IRGMND-YLPGETA-IWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVE-KEMYTFEDRNGDSLTLRPEG 83 (423)
T ss_dssp CTTCCC-BCHHHHH-HHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHH-HTCEEEECTTSCEEEECSCS
T ss_pred CCCccc-cCHHHHH-HHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhh-hheEEEEcCCCCEEEeCCCc
Confidence 578885 6776654 46899999999999999999999999999999987 87 33222 36999964 579999999
Q ss_pred CHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 303 EIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 303 Evpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
++|+++++... ..++++|+|++++++|||+|.++.| |.|||+|.+.++|+.++... ..+++.++.++|+.
T Consensus 84 t~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~p~~g-------R~Ref~Q~d~e~~g~~~~~a--d~e~i~~~~~~l~~ 153 (423)
T 1htt_A 84 TAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHERPQKG-------RYRQFHQLGCEVFGLQGPDI--DAELIMLTARWWRA 153 (423)
T ss_dssp HHHHHHHHHHH-TCSTTCCEEEEEEEEEECCCCCCSS-------CCSEEEEEEEEEESCCSHHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhc-ccccCCCeEEEEEcCEecCCCCCCC-------ccceeEEeeEEEECCCCchh--hHHHHHHHHHHHHH
Confidence 99999998765 3467899999999999999977644 89999999999999875422 35789999999999
Q ss_pred cCC-c-EEEEe
Q 016049 383 LGL-H-FKLLL 391 (396)
Q Consensus 383 LgL-p-yrvv~ 391 (396)
||+ + |++..
T Consensus 154 lgl~~~~~i~i 164 (423)
T 1htt_A 154 LGISEHVTLEL 164 (423)
T ss_dssp HTCGGGCEEEE
T ss_pred CCCCCCcEEEE
Confidence 999 4 77653
No 32
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.76 E-value=1.3e-19 Score=186.52 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=127.6
Q ss_pred CCHHHHhhhcCcccccccc-----ccCCcceeecchHHHHHHHHHHHHHHHHH--HHCCCEeeecCCccchHHHHhh--c
Q 016049 208 KDHFQLGKALDIFDFDAAA-----EVSGSKFYYLKNEAVMLEMGLINWTLSEV--IKRGFTPLTTPEIVRSSVVEKC--G 278 (396)
Q Consensus 208 ~dH~eLg~~l~l~df~~~a-----kvsG~rf~~l~g~~a~Le~aLi~~~~d~~--~~~Gy~ei~tP~lv~~~~~~~s--G 278 (396)
..+++|+++.|++...... -++|. ++.+.+.|+.|.+.|++++.+.+ .+.||.+|.+|.|.+..+|.++ |
T Consensus 25 ~~~~~l~krrgf~~~s~eiy~g~~~~~G~-~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g 103 (454)
T 1g5h_A 25 EALVDLCRRRHFLSGTPQQLSTAALLSGC-HARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAF 103 (454)
T ss_dssp CHHHHHHHHTTSBCCCGGGGSHHHHHHCC-SCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCC
T ss_pred HHHHHHHHHcCCccccchhcccCCCCCcc-eeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccC
Confidence 4588999999998643321 12243 21344445567899999888874 5889999999999999999876 6
Q ss_pred c---CCCCCC---------cccEEE----eCCceEEec-CCCHHHHHHHhccccCCC-CCCceEEEeccccc---cCcCC
Q 016049 279 F---QPRGAN---------TQVYSI----EGADQCLIG-TAEIPVGGIHMDSILSES-LLPLKYAAFSHCFR---TEAGA 337 (396)
Q Consensus 279 ~---~p~~~~---------~q~y~i----~~~~l~L~p-TaEvpl~~l~~~~~l~~~-~LPlK~~~~~~cFR---~Eag~ 337 (396)
+ +.++.+ ++||.+ .++.+||+| |++..+.+ |.+...+++ +||++++++|+||| +|.++
T Consensus 104 ~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~~-f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~ 182 (454)
T 1g5h_A 104 RLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALEH-YVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQT 182 (454)
T ss_dssp EEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHHT-HHHHHHHTTTBSCEEEEEEEEEEEEEC-----
T ss_pred cccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHHH-HhhhHhhcccCCCEEEEEeeeeccCCcccccC
Confidence 6 443321 123322 235789999 44444444 455544555 99999999999999 59864
Q ss_pred CCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc---EEEEe
Q 016049 338 AGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH---FKLLL 391 (396)
Q Consensus 338 ~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp---yrvv~ 391 (396)
..||+|+|||+|.|++.||+|+++.++++.+++.+..+|+.||++ +|..+
T Consensus 183 ----~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi~~~~~r~~~ 235 (454)
T 1g5h_A 183 ----PSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSAD 235 (454)
T ss_dssp --------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGGGEEEEE
T ss_pred ----CCCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCCCceeEEecC
Confidence 589999999999999999999999999999999999999999997 77654
No 33
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.73 E-value=3.2e-17 Score=166.21 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=122.7
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---CceEEecCCCH
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQCLIGTAEI 304 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l~L~pTaEv 304 (396)
..|+++ |+|.+.. +.+.|++.+.+.+.++||++|.||.|.+.++|.++|.. . ..+||++.+ +.++|+|..+.
T Consensus 13 p~G~~d-~lP~~~~-~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~--~-~~~my~f~D~~g~~l~LRpd~T~ 87 (400)
T 3od1_A 13 PFGMRD-TLPEWYK-TKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAI--L-DQQLFKLLDQQGNTLVLRPDMTA 87 (400)
T ss_dssp CTTCCC-BCHHHHH-HHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSS--C-GGGSCEEECTTSCEEEECSCSHH
T ss_pred CCcchh-cCHHHHH-HHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCc--c-ccceEEEECCCCCEEEECCCCHH
Confidence 579985 6776654 56899999999999999999999999999999988732 2 347999964 57999999999
Q ss_pred HHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcC
Q 016049 305 PVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLG 384 (396)
Q Consensus 305 pl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~Lg 384 (396)
|+++++... +...++|+|++++|+|||+|.++.| |.|||+|++.++|+.++... -.|++.++.++|+.||
T Consensus 88 ~~aR~~~~~-~~~~~~P~r~~y~g~vfR~e~~~~g-------R~Ref~Q~g~ei~G~~~~~a--DaEvi~l~~~~l~~lg 157 (400)
T 3od1_A 88 PIARLVASS-LKDRAYPLRLAYQSNVYRAQQNEGG-------KPAEFEQLGVELIGDGTASA--DGEVIALMIAALKRAG 157 (400)
T ss_dssp HHHHHHHHH-CSSSCSCEEEEEEEEEECCCC---C-------CCSEEEEEEEEEESCCSHHH--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhh-cccCCCCeEEEEEcCEEeCCCCCCC-------CCCccEEeEEEEECCCChHh--HHHHHHHHHHHHHHCC
Confidence 999998765 4567899999999999999987655 89999999999999865322 2589999999999999
Q ss_pred Cc-EEEE
Q 016049 385 LH-FKLL 390 (396)
Q Consensus 385 Lp-yrvv 390 (396)
++ |++.
T Consensus 158 l~~~~i~ 164 (400)
T 3od1_A 158 LSEFKVA 164 (400)
T ss_dssp CCSEEEE
T ss_pred CCceEEE
Confidence 95 7654
No 34
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.73 E-value=2.6e-17 Score=165.46 Aligned_cols=156 Identities=10% Similarity=0.118 Sum_probs=120.3
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---CceEEecCCCH
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQCLIGTAEI 304 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l~L~pTaEv 304 (396)
.+|+++ |+|.+.. +.+.|++.+.+.+.++||++|.||.|.+.++|..+|... ...+||++.+ +.++|+|..++
T Consensus 26 p~G~~d-~lP~~~~-~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~--~~~~my~~~D~~g~~l~LRpd~T~ 101 (373)
T 3rac_A 26 PPGMQD-GYPDFAK-RRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPE--SSRDWIRLFDGGGDAVALRPEMTP 101 (373)
T ss_dssp CTTCCC-CCTTHHH-HHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTT--SCCCCCBCCCCSSSCEEECSSSHH
T ss_pred CCCccc-cCHHHHH-HHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCcc--chhceEEEECCCCCEEEECCcCHH
Confidence 579985 6666654 468999999999999999999999999999999887422 2047999853 67999999999
Q ss_pred HHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcC
Q 016049 305 PVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLG 384 (396)
Q Consensus 305 pl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~Lg 384 (396)
|++.++.... ...++|+|++++|+|||+|.++.+ ...|.-|.|||+|++.++|+.+++.... .|++.++.++|+.||
T Consensus 102 ~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~g~~-~~~~~gR~ReF~Q~g~ei~g~~d~~~aD-aEvi~l~~~~l~~lg 178 (373)
T 3rac_A 102 SIARMAAPRV-AAGRTPIRWCYCERVYRRTDDPAS-LSWASGKAAESTQVGIERIGEEASVDVD-MDVLRLLHEASAAAG 178 (373)
T ss_dssp HHHHHHHHHH-HTTCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSCCCHHHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcc-ccCCCCeEEEEEcceEccCCCccc-ccccCCccceeEEeeeEEECCCCCHHHH-HHHHHHHHHHHHHcC
Confidence 9999987653 347899999999999999987211 0001228999999999999988543332 589999999999999
Q ss_pred Cc-EEEE
Q 016049 385 LH-FKLL 390 (396)
Q Consensus 385 Lp-yrvv 390 (396)
++ |++.
T Consensus 179 l~~~~i~ 185 (373)
T 3rac_A 179 VRHHRIV 185 (373)
T ss_dssp CCSCEEE
T ss_pred CCceEEE
Confidence 94 6554
No 35
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.71 E-value=8.3e-17 Score=166.01 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=123.2
Q ss_pred HhhhcCccccccccccCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcc-cEEE
Q 016049 213 LGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ-VYSI 291 (396)
Q Consensus 213 Lg~~l~l~df~~~akvsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q-~y~i 291 (396)
++.+-+.+.++. ..|++. ++|.+... ++.|++.+.+.+.++||++|.||.|...++|.++| . .. .+ ||++
T Consensus 3 ~~~~~~~~~~~~---p~G~~D-~lP~~~~~-~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G-~-~~--ke~m~~~ 73 (465)
T 3net_A 3 AMAKNDKINFST---PSGFPE-FLPSEKRL-ELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKG-N-QG--DNIIYGL 73 (465)
T ss_dssp ------CCCCSC---CTTCCC-CCHHHHHH-HHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGG-C-C----CBEEEE
T ss_pred cccCCccccccC---CCCccc-cCHHHHHH-HHHHHHHHHHHHHHcCCEEeeccccccHHHHhccC-C-CC--ccceEEE
Confidence 455667777765 689995 78887654 58999999999999999999999999999999777 2 22 35 9988
Q ss_pred eC------------------CceEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEE
Q 016049 292 EG------------------ADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSK 353 (396)
Q Consensus 292 ~~------------------~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~k 353 (396)
.+ +.++|+|..++|+++++.... ...++|+|++++|+|||+|.++.| |.|||+|
T Consensus 74 ~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~e~~~~g-------r~Ref~Q 145 (465)
T 3net_A 74 EPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRGERAKDG-------RFRQFRQ 145 (465)
T ss_dssp EEEC----------------CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECBC-------------CCEEEE
T ss_pred ecccccccccccccccCCCCCEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEecCCCCCC-------CcceeEE
Confidence 43 468999999999999988764 456799999999999999988766 8999999
Q ss_pred eeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc-EEEE
Q 016049 354 LEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH-FKLL 390 (396)
Q Consensus 354 vE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp-yrvv 390 (396)
+++.+|+.++.....-.|++.++.++|+.||++ |++.
T Consensus 146 ~g~ei~G~~~~~a~~DaEvi~l~~~~l~~lgl~~~~i~ 183 (465)
T 3net_A 146 CDIDVVGREKLSLLYDAQMPAIITEIFEAVNIGDFVIR 183 (465)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCSCEEEE
T ss_pred eeEEEECCCCccchhhHHHHHHHHHHHHHcCCCceEEE
Confidence 999999887533311248999999999999996 6654
No 36
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.71 E-value=6.9e-17 Score=166.36 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=121.1
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
..|+++ |+|.+.. +.+.|++.+.+.+.++||++|.||.|.+.++|.+ +|+. . ..+||++.+ +.++|+|..+
T Consensus 32 p~G~~d-~lP~~~~-~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~-~~~my~f~D~~g~~l~LRpd~T 106 (456)
T 3lc0_A 32 VQGCRD-FPPEAMR-CRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--I-TEQMFNFITKGGHRVALRPEMT 106 (456)
T ss_dssp STTCCC-CCHHHHH-HHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--H-HHTCEEEECSSSCEEEECSCSH
T ss_pred CCCCcc-cCHhHHH-HHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--h-hhceEEEEcCCCCEEecCCcCH
Confidence 589985 6777654 5689999999999999999999999999999986 4763 2 247999964 5799999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
.|+++++.... .+.++|+|++++|+|||+|.++.| |.|||+|++..+|+.++...+ .|++.++.++|+.|
T Consensus 107 ~~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~~~g-------R~ReF~Q~g~ei~G~~~~~~D--aEvi~l~~~~l~~l 176 (456)
T 3lc0_A 107 PSLARLLLGKG-RSLLLPAKWYSIPQCWRYEAITRG-------RRREHYQWNMDIVGVKSVSAE--VELVCAACWAMRSL 176 (456)
T ss_dssp HHHHHHHHHSC-TTCCSSEEEEECCEEECCCC------------CCEEEEEEEEEESCCSTHHH--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-cccCCCEEEEEeccEEecCCCCCC-------CccceEEEEEEEEcCCChHhh--HHHHHHHHHHHHHc
Confidence 99999988764 467899999999999999988765 899999999999998754322 58999999999999
Q ss_pred CC---cEEEE
Q 016049 384 GL---HFKLL 390 (396)
Q Consensus 384 gL---pyrvv 390 (396)
|+ +|++.
T Consensus 177 gl~~~~~~i~ 186 (456)
T 3lc0_A 177 GLSSKDVGIK 186 (456)
T ss_dssp TCCTTTEEEE
T ss_pred CCCCCceEEE
Confidence 99 47654
No 37
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.65 E-value=1.8e-15 Score=147.19 Aligned_cols=137 Identities=19% Similarity=0.298 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCC--CCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCCCc
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPR--GANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPL 322 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~--~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPl 322 (396)
+++++++.+.+...||++|.||.|++.++|.++|+++. .. ..++.++ ++++|+|+.+..+..+++....+ +++|+
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~-~~~npl~-e~~~LRp~l~p~l~~~~r~~~~~-~~~Pl 150 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLF-SQVFWLD-GKKCLRPMLAPNLYTLWRELERL-WDKPI 150 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCT-TTSCEEE-TTEEECSCSHHHHHHHHHHHTTT-SCSCE
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccE-Eeecccc-cchhhhhcChHHHHHHHHHHHhC-CCCCE
Confidence 68899999999999999999999999999999998763 11 1244555 56899998877777766655433 78999
Q ss_pred eEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCC-cEEEEecc
Q 016049 323 KYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGL-HFKLLLFL 393 (396)
Q Consensus 323 K~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgL-pyrvv~~~ 393 (396)
|++++|+|||+|.++.+ |++||+|+|+++++.++.. .+.++..+++.+++.||+ +|++..-+
T Consensus 151 rlfeiG~vFR~E~~~~~-------r~~EF~qle~~i~g~~~~~--~f~elkg~le~ll~~LGl~~~~~~~~s 213 (288)
T 3dsq_A 151 RIFEIGTCYRKESQGAQ-------HLNEFTMLNLTELGTPLEE--RHQRLEDMARWVLEAAGIREFELVTES 213 (288)
T ss_dssp EEEEEEEEECSCCSSSC-------CCSEEEEEEEEEETCCGGG--HHHHHHHHHHHHHHHHTCCCCEEEECC
T ss_pred EEEEEeeEEecCCCCCC-------cCccEEEEEEEEEcCCchh--hHHHHHHHHHHHHHHcCCCCcEEecCC
Confidence 99999999999987543 7899999999999987543 378999999999999999 58876543
No 38
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=155.91 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=113.2
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
..|++. |+|.+.. +++.+++.+++.+.++||++|.||.|.+.++|.+ .|.. .+.||++.+ +.++|+|..+
T Consensus 70 P~G~~D-~lP~~~~-~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~----~~~my~f~D~~g~~l~LRPd~T 143 (517)
T 4g85_A 70 PKGTRD-YSPRQMA-VREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED----SKLIYDLKDQGGELLSLRYDLT 143 (517)
T ss_dssp CTTCCC-BCHHHHH-HHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC----------CSCBBCCTTSCCEEECSCSH
T ss_pred CCCCCc-cCHHHHH-HHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC----cceeEEEECCCCCEEEeCCcCc
Confidence 479985 7777765 4689999999999999999999999999999975 4532 236898864 5799999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
+|+++++... +.+|+|+|++|+|||+|.++.+ +| |.|||+|++..+|+.++...+. .|++.++.++|+.|
T Consensus 144 ~~~aR~~~~~----~~~p~k~yyig~vfR~Erp~~~---~G--R~ReF~Q~g~ei~G~~~~~~aD-aEvi~l~~~~l~~l 213 (517)
T 4g85_A 144 VPFARYLAMN----KLTNIKRYHIAKVYRRDNPAMT---RG--RYREFYQCDFDIAGNFDPMIPD-AECLKIMCEILSSL 213 (517)
T ss_dssp HHHHHHHHHT----TCSCEEEEEEEEEECCCC------------CCEEEEEEEEEESCCCTTHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC----CCCCceeEEEeceEeccCcccc---cC--ccceeeeeceeccCCccchHHH-HHHHHHHHHHHHhh
Confidence 9999987643 4689999999999999977432 34 9999999999999976543222 47999999999999
Q ss_pred CCc-EEE
Q 016049 384 GLH-FKL 389 (396)
Q Consensus 384 gLp-yrv 389 (396)
|+. |.+
T Consensus 214 gl~~~~i 220 (517)
T 4g85_A 214 QIGDFLV 220 (517)
T ss_dssp CCCCEEE
T ss_pred cCCcccc
Confidence 996 544
No 39
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.60 E-value=7.3e-15 Score=150.40 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=114.3
Q ss_pred cCCcceeecchHHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHh-hccCCCCCCcccEEEeC---CceEEecCCC
Q 016049 228 VSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEK-CGFQPRGANTQVYSIEG---ADQCLIGTAE 303 (396)
Q Consensus 228 vsG~rf~~l~g~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~-sG~~p~~~~~q~y~i~~---~~l~L~pTaE 303 (396)
..|++. |||.+.. +.+.+++.+++.+.++||++|.||.|.+.++|.+ .|.. . ++||++.+ +.++|+|..+
T Consensus 17 p~G~~D-~lP~~~~-~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~---~-~~~y~f~D~~g~~l~LRPd~T 90 (464)
T 4g84_A 17 PKGTRD-YSPRQMA-VREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED---S-KLIYDLKDQGGELLSLRYDLT 90 (464)
T ss_dssp CTTCCC-BCHHHHH-HHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC--------CCCBBCCCSSCCEEECSCSH
T ss_pred CCCcCc-cCHHHHH-HHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcC---c-ceeEEEECCCCCEEEeCCcCc
Confidence 479985 7777765 4689999999999999999999999999999975 4432 1 36898864 6799999999
Q ss_pred HHHHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 304 IPVGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 304 vpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
+|+++++... +.+|+|++++|+|||+|.++.| ..|.|||+|+...+|+.++...+. .|++.++.++|+.|
T Consensus 91 ~~~aR~~~~~----~~~p~k~~y~g~vfR~erp~~~-----~gR~Ref~Q~g~ei~G~~~~~~aD-aEvi~l~~~~l~~l 160 (464)
T 4g84_A 91 VPFARYLAMN----KLTNIKRYHIAKVYRRDNPAMT-----RGRYREFYQCDFDIAGNFDPMIPD-AECLKIMCEILSSL 160 (464)
T ss_dssp HHHHHHHHHT----TCSCEEEEEEEEEECCCC-----------CCSEEEEEEEEEESCCSTTHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCCCceeEEEecceeccCCccc-----cCccceeeecceeccCCccchhhH-HHHHHHHHHHHHHh
Confidence 9999987643 4689999999999999976533 248999999999999876533222 47999999999999
Q ss_pred CCc-EEE
Q 016049 384 GLH-FKL 389 (396)
Q Consensus 384 gLp-yrv 389 (396)
|+. +.+
T Consensus 161 gl~~~~i 167 (464)
T 4g84_A 161 QIGDFLV 167 (464)
T ss_dssp TCCCEEE
T ss_pred CCCCcce
Confidence 996 543
No 40
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.41 E-value=2.3e-13 Score=131.26 Aligned_cols=119 Identities=15% Similarity=0.063 Sum_probs=97.0
Q ss_pred HHHHHHH--HHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccE-EEeCCceEEecCCCHHHHHHHhccccCCCC-CC
Q 016049 246 GLINWTL--SEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVY-SIEGADQCLIGTAEIPVGGIHMDSILSESL-LP 321 (396)
Q Consensus 246 aLi~~~~--d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y-~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~-LP 321 (396)
.|++++. +.+.++||++|.||.|.+.++|.+ + +| .-+|+.++|+|..++|++ .+. +.+.+ +|
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d--~f~d~~g~~l~LRpd~T~~~a---~~~-~~~~~~~p 70 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N--FFLDRKGNLFSIREDFTKTVL---NHR-KRYSPDSQ 70 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S--CEEETTSCEEEECCCHHHHHH---HHH-TTCTTCCC
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc--------c--ccCCCCCCEEEeCCcChHHHH---HHH-hhcCCCCc
Confidence 4667777 899999999999999999999975 1 23 223568999999999988 222 34567 99
Q ss_pred ceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc-EEEE
Q 016049 322 LKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH-FKLL 390 (396)
Q Consensus 322 lK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp-yrvv 390 (396)
+|++++|+|||+|.++. |||+|++.++||.++...+ .|++.++.++|+.||+. |++.
T Consensus 71 ~R~~y~g~vfR~e~~~~----------Ref~Q~g~ei~g~~~~~~D--aEvi~l~~~~l~~lgl~~~~i~ 128 (275)
T 1usy_A 71 IKVWYADFVYRYSGSDL----------VAEYQLGLEKVPRNSLDDS--LEVLEIIVESASEFFEGPVIVE 128 (275)
T ss_dssp EEEECCEEEEEEETTEE----------EEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHHCCSCEEEE
T ss_pred eEEEEeceEEecCCCCC----------CeeeEeCEEEecCCCchhH--HHHHHHHHHHHHHcCCCCeEEE
Confidence 99999999999998751 8999999999998865433 78999999999999996 6643
No 41
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.36 E-value=8.9e-12 Score=120.85 Aligned_cols=135 Identities=19% Similarity=0.289 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCC-CCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCCCce
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRG-ANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLK 323 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~-~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK 323 (396)
..+.+.+++.+...||++|.||.|+..+.+...|..... ...++|.+ ++..+|+||....+....... +.....|+|
T Consensus 80 ~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~LR~slsp~L~~~l~~n-~~~~~~p~r 157 (290)
T 3qtc_A 80 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV-DKNFCLRPMLTPNLYNYLRKL-DRALPDPIK 157 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE-TTTEEECSCSHHHHHHHHHHH-TTTSCSSEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheee-CCCeeEcccChHHHHHHHHHh-hccCCCCeE
Confidence 577888888899999999999999999998887654321 11247777 467899999887777654432 345678999
Q ss_pred EEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCcEEEEec
Q 016049 324 YAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKLLLF 392 (396)
Q Consensus 324 ~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLpyrvv~~ 392 (396)
++++|+|||+|....+ |.+||+|+|+..+.... + +.++..+++.+++.||++|++...
T Consensus 158 lfeiG~vFR~E~~~~~-------~~~Ef~ql~~~~~g~~~-~---f~elkg~le~ll~~lGl~~~~~~~ 215 (290)
T 3qtc_A 158 IFEIGPCYRKESDGKE-------HLEEFTMLVFWQMGSGC-T---RENLESIITDFLNHLGIDFKIVGD 215 (290)
T ss_dssp EEEEEEEECCCSCSSS-------CCSEEEEEEEEEESTTC-C---HHHHHHHHHHHHHHHTCCCEEEC-
T ss_pred EEEEcCEEecCCCCCc-------CcchheEEEEEEEcCCh-H---HHHHHHHHHHHHHHcCCCcEEeCC
Confidence 9999999999965433 68999999999887543 2 568999999999999999887643
No 42
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=98.61 E-value=2.5e-07 Score=89.89 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccch-HHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRS-SVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILS 316 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~-~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~ 316 (396)
..++...+++.+++.+.++||.+|.||.|... +.+..+.. +.. ..+|.+. +.+.+|.-+.+..+..+..
T Consensus 14 ~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~-~e~--a~~f~~~~~~~~~~L~~Spe~~~~~l~~----- 85 (294)
T 1nnh_A 14 TLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPA-GEG--MEPAEVEIYGVKMRLTHSMILHKQLAIA----- 85 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTT-CCC--CCCCEEEETTEEEEECSCSHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCC-CCc--ceeEEEEcCCCCEEeccChHHHHHHHhh-----
Confidence 34667889999999999999999999999988 65543310 111 2466643 5567886544543333221
Q ss_pred CCCCCceEEEeccccccCcCCC--CCCCCCcceee-eEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 317 ESLLPLKYAAFSHCFRTEAGAA--GTATRGLYRVH-QFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 317 ~~~LPlK~~~~~~cFR~Eag~~--G~~t~GL~Rvh-QF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
. -|.|++++|+|||+|.++. | |-+ ||+|+|....... ++++++.++++++.+
T Consensus 86 -~-g~~rvf~ig~~FR~E~pq~~~~-------RH~~EFtqle~e~~~~~------~~~l~~~~e~l~~~l 140 (294)
T 1nnh_A 86 -M-GLKKIFVLSPNIRLESRQKDDG-------RHAYEFTQLDFEVERAK------MEDIMRLIERLVYGL 140 (294)
T ss_dssp -T-TCCEEEEEEEEECCCCGGGCSS-------SCCSEEEEEEEEEETCC------HHHHHHHHHHHHHHH
T ss_pred -c-CccceEEEEccEeCCCCCCCCC-------ccccceeEEEEEecCCC------HHHHHHHHHHHHHHH
Confidence 1 2789999999999998432 3 444 9999999987553 234444444444433
No 43
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.47 E-value=1.1e-06 Score=89.78 Aligned_cols=110 Identities=14% Similarity=0.210 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..++...+++.+++.+.++||.+|.||.|... .+| . ..++|.+. +.+++|.-..+..+-.+.. .
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~----~~e----~-~~~~f~~~~~~~~~~L~~Spql~~~~~~~-g---- 198 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIFTPKIIAS----ATE----G-GAQLFPVIYFGKEAFLAQSPQLYKELMAG-V---- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CSS----T-TCCCCEEEETTEEEEECSCCHHHHHHHHH-H----
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEECCEEEee----CCC----C-CceeEEEecCCceEEecCCcHHHHHHHHh-C----
Confidence 34567788999999999999999999999865 221 1 12466664 4568886445554333222 1
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceee-eEEEeeEEEeCCc-cchHHHHHHHH
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVH-QFSKLEMFVFCQP-EESDSYHEELI 373 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~Rvh-QF~kvE~f~f~~p-e~S~~~~ee~l 373 (396)
+-|++++|+|||+|....| |-. ||+|+|....... ++..+..++++
T Consensus 199 ---~~rvf~ig~~FR~E~~~~~-------RH~pEFtqle~e~~~~~~~dlm~~~e~ll 246 (429)
T 1wyd_A 199 ---VERVFEVAPAWRAEESDTP-------FHLAEFISMDVEMAFADYNDVMQLLEKIL 246 (429)
T ss_dssp ---HSEEEEEEEEECCCCCCSS-------SCCSEEEEEEEEEETCCHHHHHHHHHHHH
T ss_pred ---cCceEEEcccccccCCccc-------cccceeeEeeeeecCCCHHHHHHHHHHHH
Confidence 5799999999999987554 344 9999999987543 23333334433
No 44
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.39 E-value=1.8e-06 Score=88.27 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..++...+++.+++.+.++||.+|.||.|... .+| . ..++|.+. +.+++|+-+.+..+-.+. .
T Consensus 134 ~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~----~~e----~-~~~~f~~~~~~~~~~Lr~Spel~~~~~~-----~- 198 (434)
T 1x54_A 134 IMKVKETLIMAAREWLLKDGWHEVFPPILVTG----AVE----G-GATLFKLKYFDKYAYLSQSAQLYLEAAI-----F- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESC----CSS----C-GGGCCEEEETTEEEEECSCSHHHHHHHH-----H-
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee----cCC----C-CceeEEEeecCCcEEeccChHHHHHHHh-----c-
Confidence 34567788999999999999999999999855 111 1 12466654 456888833333322211 1
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ 361 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~ 361 (396)
-|.|++++|+|||+|....|+ ...||+|+|......
T Consensus 199 --g~~rvf~ig~~FR~E~~~~~R------H~pEFtqle~e~~~~ 234 (434)
T 1x54_A 199 --GLEKVWSLTPSFRAEKSRTRR------HLTEFWHLELEAAWM 234 (434)
T ss_dssp --HHSEEEEEEEEECCCCCCCSS------CCSEEEEEEEEEETC
T ss_pred --CccceEEEecceecCCCCCcc------cccEEEEeeEEEcCC
Confidence 267999999999999775552 234999999998754
No 45
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.35 E-value=3e-06 Score=87.80 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..+++..+++.+++.+.++||.+|.||.|.... ||- ...+|.+. +.++||+-..|..+-.+...
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~----~~~-----ga~~f~~~~~~~~~~L~~Spql~~k~l~~~----- 242 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAP----SEG-----GSSVFEVTYFKGKAYLAQSPQFNKQQLIVA----- 242 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC----SSS-----SSCCCEEEETTEEEEECSCTHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec----CCC-----CcccceeccCCccEEcccChHHHHHHHHhc-----
Confidence 446678899999999999999999999998754 221 12466664 56789885555533222111
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceee-eEEEeeEEE-eCC-ccchHHHHHHHHHHH
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVH-QFSKLEMFV-FCQ-PEESDSYHEELIRIE 376 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~Rvh-QF~kvE~f~-f~~-pe~S~~~~ee~l~~~ 376 (396)
-+-|+|++|+|||+|....| |-. ||+|+|+.. |+. -++..+..++|+..+
T Consensus 243 --g~~rvy~ig~~FR~E~~~~~-------Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l 295 (487)
T 1eov_A 243 --DFERVYEIGPVFRAENSNTH-------RHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFI 295 (487)
T ss_dssp --TCCEEEEEEEEECCCCCCCT-------TCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHH
T ss_pred --CCCceEEEeccEecCCCCCC-------ccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 24599999999999987555 454 999999975 664 355566666665443
No 46
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.33 E-value=3.8e-06 Score=87.14 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceEEecCCCHHHHHHHhcccc
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~L~pTaEvpl~~l~~~~~l 315 (396)
..++...+++.+++.+.++||.+|.||.|... .+|- ...+|.+. +.++||+=..+ +|....+
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~----~~Ga-----~a~~F~~~~~~~~~~~yLr~Spq-----Lylk~l~ 238 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAV----AGGA-----AARPFITHHNALDMTLYMRIAIE-----LHLKRLI 238 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSS-----SSCCCEEEETTTTEEEEECSCSH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEec----CCCC-----cccceEecccCCCceeEEecCHH-----HHHHHHh
Confidence 44667889999999999999999999999754 2332 12355543 35688873333 2332211
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cchHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EESDSYHEELIR 374 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S~~~~ee~l~ 374 (396)
. .-.-|+|++|+|||+|..... |..||+|+|++..-.. ++..+..++|+.
T Consensus 239 v--~G~~rVyeig~~FR~E~~~~r-------H~pEFT~lE~e~af~d~~dlm~l~E~ll~ 289 (493)
T 3a74_A 239 V--GGLEKVYEIGRVFRNEGISTR-------HNPEFTMLELYEAYADFRDIMKLTENLIA 289 (493)
T ss_dssp H--TTCCEEEEEEEEECCCCCBTT-------BCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred h--cccCceEEECccccCCCCCcc-------cCCceeEEEEEecCCCHHHHHHHHHHHHH
Confidence 1 124599999999999976532 8999999999986432 334444444443
No 47
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.30 E-value=1.7e-06 Score=88.12 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..++...+++.+++.+.++||.+|.||.|... .+|- ..++|.+. +.+++|.-+.+..+-. +..
T Consensus 124 ~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~----~~e~-----~~~~f~~~~~g~~~~L~~Spel~~~~-l~~----- 188 (422)
T 1n9w_A 124 PLKVQAALVRGFRRYLDRQDFTEIFTPKVVRA----GAEG-----GSGLFGVDYFEKRAYLAQSPQLYKQI-MVG----- 188 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCC-------------------------------------CHHHHHH-HHH-----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEEe----CCCC-----CceeEEEeeCCCcEEeeeCHHHHHHH-Hhh-----
Confidence 34567889999999999999999999999865 2221 11355553 4567886444443322 221
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceee-eEEEeeEEEeCC-c-cchHHHHHHHHH
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVH-QFSKLEMFVFCQ-P-EESDSYHEELIR 374 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~Rvh-QF~kvE~f~f~~-p-e~S~~~~ee~l~ 374 (396)
. +-|++++|+|||+|....| |-. ||+|+|...... . ++..+..++++.
T Consensus 189 -g-~~rvf~ig~~FR~E~~~~~-------RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~ 239 (422)
T 1n9w_A 189 -V-FERVYEVAPVWRMEEHHTS-------RHLNEYLSLDVEMGFIADEEDLMRLEEALLA 239 (422)
T ss_dssp -H-HSEEEEEEEC--------------------CCEEEEEEEESCSSHHHHHHHHHHHHH
T ss_pred -C-CCceeEEeCceECCCCCCC-------cccceeEEeeeeeeCCCCHHHHHHHHHHHHH
Confidence 1 3599999999999987655 444 999999998765 2 333334444443
No 48
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.26 E-value=7.7e-06 Score=81.19 Aligned_cols=114 Identities=12% Similarity=0.139 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--------CCceEEecCCCHHHHHHH
Q 016049 239 EAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--------GADQCLIGTAEIPVGGIH 310 (396)
Q Consensus 239 ~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--------~~~l~L~pTaEvpl~~l~ 310 (396)
...++...+++.+++.+.++||.+|.||.|.... .+|- ....|.+. +.+.||.-..+..+-.+.
T Consensus 34 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~---~~~a-----~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 34 PNLLKRAAIMAEIRRFFADRGVLEVETPCMSQAT---VTDI-----HLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC---CCCT-----TCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecC---CCCC-----ccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 4557788899999999999999999999998654 1111 11234332 145788755555544333
Q ss_pred hccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC-ccchHHHHHHHHH
Q 016049 311 MDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ-PEESDSYHEELIR 374 (396)
Q Consensus 311 ~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~-pe~S~~~~ee~l~ 374 (396)
... + =|+|++++|||+|..... |+-||+|+|++..-. -++..+..++++.
T Consensus 106 ~~g------~-~rvyqIg~~FR~E~~~~r-------H~pEFt~lE~e~af~d~~d~m~~~E~li~ 156 (345)
T 3a5y_A 106 VAG------C-GPVFQLCRSFRNEEMGRY-------HNPEFTMLEWYRPHYDMYRLMNEVDDLLQ 156 (345)
T ss_dssp HTT------C-CSEEEEEEEECCCCCBTT-------BCSEEEEEEEEEETCCHHHHHHHHHHHHH
T ss_pred HcC------C-CcEEEEEcceeCCCCccc-------ccchhheeeeeeeCCCHHHHHHHHHHHHH
Confidence 322 1 289999999999977432 799999999987543 2333333344433
No 49
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.21 E-value=8.9e-06 Score=84.56 Aligned_cols=114 Identities=15% Similarity=0.211 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceEEecCCCHHHHHHHhccc
Q 016049 239 EAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQCLIGTAEIPVGGIHMDSI 314 (396)
Q Consensus 239 ~~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~L~pTaEvpl~~l~~~~~ 314 (396)
...+++..+++.+++.+.++||.+|.||.|... .+|-. ...|.+. +.++||+=..+.-+-.+....
T Consensus 181 ~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~----~~Ga~-----ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~G- 250 (504)
T 1e1o_A 181 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGAS-----ARPFITHHNALDLDMYLRIAPELYLKRLVVGG- 250 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECCCCSEESS----CCSSC-----CCCCEEEETTTTEEEEECSCSHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEEec----CCCCc-----ccceEeccCCCCceEEeccCHHHHHHHHhhcC-
Confidence 344667889999999999999999999999743 23311 1344442 456888744443332222211
Q ss_pred cCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cchHHHHHHHHHH
Q 016049 315 LSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EESDSYHEELIRI 375 (396)
Q Consensus 315 l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S~~~~ee~l~~ 375 (396)
.=|+|++|+|||+|.... -|..||+|+|++..-.. ++..+..++|+..
T Consensus 251 ------~~rVyeIg~~FR~E~~~~-------rH~pEFt~lE~e~af~d~~dlm~l~E~li~~ 299 (504)
T 1e1o_A 251 ------FERVFEINRNFRNEGISV-------RHNPEFTMMELYMAYADYHDLIELTESLFRT 299 (504)
T ss_dssp ------CCEEEEEEEEECCCCCCC--------CCSEEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred ------CCcEEEEcccccCCCCCc-------cccCceeeeeeeecCCCHHHHHHHHHHHHHH
Confidence 248999999999997643 28999999999986432 3444444444433
No 50
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.03 E-value=3.4e-05 Score=78.82 Aligned_cols=114 Identities=12% Similarity=0.198 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..++...+++.+++.+.++||.+|.||.|..... .|. ..+|.+. |.++||.-..+.-+-.+.. .
T Consensus 131 ~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~---eG~------~~~F~~~~~g~~~~L~~SpqLylq~l~~-g---- 196 (435)
T 2xgt_A 131 LLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV---EGG------STLFNLDYFGEQSFLTQSSQLYLETCIP-T---- 196 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS---SCT------TSCCEEEETTEEEEECSCSHHHHHHHHH-H----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC---CCc------hhceeeccCCcccccCCChHHHHHHhhh-c----
Confidence 3466788999999999999999999999976542 121 1245554 4567887554543332221 1
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC-CccchHHHHHHHHHHH
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC-QPEESDSYHEELIRIE 376 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~-~pe~S~~~~ee~l~~~ 376 (396)
-=|+|++++|||+|....++ ..-||+|+|.+..- +-++..+..++++..+
T Consensus 197 ---~~rvfeIg~~FR~E~~~t~R------H~~EFT~lE~e~af~d~~d~m~~~E~li~~~ 247 (435)
T 2xgt_A 197 ---LGDVFCIAQSYRAEKSRTRR------HLAEYAHVEAECPFITLDDLMEKIEELVCDT 247 (435)
T ss_dssp ---HCSEEEEEEEECCCSSCCTT------CCSEEEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred ---cCceEEEecceecCCCCccc------cccceeEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 13899999999999754332 24499999998854 3345555566665444
No 51
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=97.98 E-value=4e-05 Score=78.37 Aligned_cols=114 Identities=15% Similarity=0.217 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCCC
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSES 318 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~~ 318 (396)
.++...+++.+++.+.++||.+|.||.|.... -+ |. . ++|.+. +.++||.-..+..+-.+....
T Consensus 137 ~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-~e--g~-----~-~~f~~~~~~~~~yL~~Spql~~q~l~~~g----- 202 (438)
T 3nem_A 137 FKIRSSVFKAVRDFFHENGFIEIHTPKIIATA-TE--GG-----T-ELFPMKYFEEDAFLAQSPQLYKQIMMASG----- 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-SS--CS-----S-SCCEEEETTEEEEECSCSHHHHHHGGGTT-----
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCEEecCC-CC--CC-----c-cceeEeeCCccEEEecChHHHHHHHHhcC-----
Confidence 45677889999999999999999999997653 12 21 1 244433 456888766555433332111
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CC-ccchHHHHHHHHHHH
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQ-PEESDSYHEELIRIE 376 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~-pe~S~~~~ee~l~~~ 376 (396)
--|+|++|+|||+|....++ ..-||+|+|++.. ++ -++..+..++|+..+
T Consensus 203 --~~rvf~i~~~FR~E~~~t~R------H~pEFt~le~e~a~~~~~~d~m~~~E~li~~~ 254 (438)
T 3nem_A 203 --LDRVYEIAPIFRAEEHNTTR------HLNEAWSIDSEMAFIEDEEEVMSFLERLVAHA 254 (438)
T ss_dssp --CCEEEEEEEEECCCSSCCTT------CCSEEEEEEEEEESCSSHHHHHHHHHHHHHHH
T ss_pred --CCceEEEcceEECCCCCCcc------cccceeeeeeeeccCccHHHHHHHHHHHHHHH
Confidence 23999999999999765332 2459999999985 44 455666666666544
No 52
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.89 E-value=0.00015 Score=72.15 Aligned_cols=125 Identities=16% Similarity=0.168 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchH-HHHhhccCCCC----CCcccEEEeC-------------CceEEecCCCHH-
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSS-VVEKCGFQPRG----ANTQVYSIEG-------------ADQCLIGTAEIP- 305 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~-~~~~sG~~p~~----~~~q~y~i~~-------------~~l~L~pTaEvp- 305 (396)
..+.+.+++.+...||+++.+|.+.... .+...+. |.. ...+.|.+.+ .+..+.-|+..|
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~-p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ 182 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNI-PEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTC-CSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCC-CCCCccccccccEEEcCccccccccccccccccceeeccchHH
Confidence 4567778888899999999999887643 2344432 221 0023566653 133344455555
Q ss_pred HHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc-C
Q 016049 306 VGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL-G 384 (396)
Q Consensus 306 l~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L-g 384 (396)
+...... ...|+|++++|+|||+|... .. ...||+|+|.+.....- + +..+....+.+++.| |
T Consensus 183 llr~l~~-----~~~piriFEiGrVFR~d~~d----~t---H~pEF~qlegl~~g~~v-~---f~dLKg~le~ll~~lfG 246 (350)
T 1b7y_A 183 QVRYMVA-----HTPPFRIVVPGRVFRFEQTD----AT---HEAVFHQLEGLVVGEGI-A---MAHLKGAIYELAQALFG 246 (350)
T ss_dssp HHHHHHH-----CCSSEEEEEEEEEECCCCCC----SS---CCSEEEEEEEEEEETTC-C---HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHh-----cCCCeeEEEeeeEEECCCCC----CC---CCChhHEEEEEEECCCC-C---HHHHHHHHHHHHHhhcC
Confidence 4444332 36799999999999987521 11 35799999999886532 2 456778888899987 8
Q ss_pred Cc
Q 016049 385 LH 386 (396)
Q Consensus 385 Lp 386 (396)
.+
T Consensus 247 ~~ 248 (350)
T 1b7y_A 247 PD 248 (350)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 53
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=97.87 E-value=7.4e-05 Score=76.74 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..++...+++.+++++.++||.+|.||.|..... ++.+ .+|.++ +.+.||.-..+..+-.+..
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~-eGg~--------~~f~~~~~~~~~~L~~SpqL~lq~l~~------ 219 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC-EGGS--------TLFKLQYFNEPAYLTQSSQLYLESVIA------ 219 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC-------C--------CCCEEEETTEEEEECSCCHHHHHTTHH------
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC-CCcc--------ccccccccCCCcccccCHHHHHHHHHh------
Confidence 3466788999999999999999999999976542 2221 234433 4567887555544322221
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHHHH
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIRIE 376 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~~~ 376 (396)
.+ =|+|++|+|||+|.....+ ..-||+|+|.+.. ++-++..+..++++..+
T Consensus 220 -g~-~rVyeig~~FR~E~~~t~r------H~pEFtmlE~e~af~d~~d~m~~~E~li~~~ 271 (456)
T 3m4p_A 220 -SL-GKSFCMLSSYRAEQSRTVR------HLAEYLHLEAELPFISFEDLLNHLEDLVCTV 271 (456)
T ss_dssp -HH-SSEEEEEEEECCCSCCCSS------CCSEEEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred -cc-CcEEEEEhheecCCCCCCc------chHHHHHhHHHHhcCCHHHHHHHHHHHHHHH
Confidence 11 3799999999999643221 2349999999985 44355555555555443
No 54
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.81 E-value=0.00016 Score=75.53 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEE----eCCceEEecCCCHHHHHHHhcccc
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSI----EGADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i----~~~~l~L~pTaEvpl~~l~~~~~l 315 (396)
..++...+++.+++.+.++||.+|.||.|... .+|-.. ..|.+ -+.++||+-..|.-+-.+....
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~----~gGa~a-----~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g-- 243 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNII----PGGAVA-----KPFITYHNELDMNLYMRIAPELYHKMLVVGG-- 243 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSSSC-----CCCEEEETTTTEEEEECSCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeecc----CCCccc-----cceeeecccCCcceEeeCCHHHHHHHHHhcC--
Confidence 44667788999999999999999999999753 234211 23333 1446888866665444333322
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeC-CccchHHHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFC-QPEESDSYHEELIRIE 376 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~-~pe~S~~~~ee~l~~~ 376 (396)
+ =|+|++|+|||+|-.. + -+.-||+|+|.+..- +-++.++..++|+..+
T Consensus 244 ----~-~rVyeig~~FR~E~~~----t---rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v 293 (521)
T 3bju_A 244 ----I-DRVYEIGRQFRNEGID----L---THNPEFTTCEFYMAYADYHDLMEITEKMVSGM 293 (521)
T ss_dssp ----C-CEEEEEEEEECCSCCB----T---TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred ----c-CceEEEEcceeCCCCC----C---ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence 1 2899999999999553 3 278899999999853 3344555555555443
No 55
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.80 E-value=0.00013 Score=75.75 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHCCCEeeec-CCccchH-HHHhhccCCCCC----CcccEEEeC-------------------------
Q 016049 245 MGLINWTLSEVIKRGFTPLTT-PEIVRSS-VVEKCGFQPRGA----NTQVYSIEG------------------------- 293 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~t-P~lv~~~-~~~~sG~~p~~~----~~q~y~i~~------------------------- 293 (396)
..+.+.+.+.+...||+++.+ |.+.... .+.+-. .|.+. ..+.|.|.+
T Consensus 228 ~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn-~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~g~~~ 306 (508)
T 3l4g_A 228 LKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALF-QPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYG 306 (508)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGT-CCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHTCBTT
T ss_pred HHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcC-CCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhccccC
Confidence 567778888889999999875 6655442 223322 22210 012455543
Q ss_pred -------------CceEEecCCCHH-HHHHHhccccCCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe
Q 016049 294 -------------ADQCLIGTAEIP-VGGIHMDSILSESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF 359 (396)
Q Consensus 294 -------------~~l~L~pTaEvp-l~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f 359 (396)
+...|+ |...| +........-.....|+|++++|+|||+|..... ++.+|+|+|.++.
T Consensus 307 s~g~~~~~~~~~~~~~vLR-Thtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~Dat-------HlpeFhQlegl~~ 378 (508)
T 3l4g_A 307 SQGYKYNWKLDEARKNLLR-THTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDAT-------HLAEFHQIEGVVA 378 (508)
T ss_dssp BCCCCSCCCHHHHTBEEEC-CCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSS-------SCSEEEEEEEEEE
T ss_pred Ccccccccccccccccccc-CCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCC-------cCCeEEEEEEEEE
Confidence 234555 55555 4444332211134689999999999999875432 5789999999876
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 360 CQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 360 ~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
..+ -+ |.++....+.+++.||+.
T Consensus 379 ~~~-v~---f~dLKg~Le~~l~~lG~~ 401 (508)
T 3l4g_A 379 DHG-LT---LGHLMGVLREFFTKLGIT 401 (508)
T ss_dssp EES-CC---HHHHHHHHHHHHHTTTCC
T ss_pred CCC-CC---HHHHHHHHHHHHHHcCCc
Confidence 432 22 456788889999999983
No 56
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.76 E-value=0.0002 Score=74.81 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceEEecCCCHHHHHHHhcccc
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~L~pTaEvpl~~l~~~~~l 315 (396)
..++...+++.+++++.++||.+|.||.|... .+|-.. ..|... +.++||.=..+..+-.+....
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~----~gGA~a-----~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G-- 271 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPI----PGGAAA-----KPFVTHHNALDMEMFLRIAPELYLKRLIVGG-- 271 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESS----CCSSSS-----CCCEEEETTTTEEEEECSCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc----CCCCcc-----cccccccccCCcceecccCHHHHHHHHHhcC--
Confidence 44667889999999999999999999999743 123211 223221 346788755555443333222
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIRIE 376 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~~~ 376 (396)
-=|+|++|+|||+|... + -+.-||+|+|.+.. ++-++..+..++|+..+
T Consensus 272 -----~~rVyeIg~~FR~E~~~----~---rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v 321 (529)
T 4ex5_A 272 -----FERVFEINRNFRNEGVS----P---RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQA 321 (529)
T ss_dssp -----CSEEEEEEEEECCSCCB----T---TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred -----CCcEEEeehheecCCCC----C---CcccHhHhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence 13899999999999753 2 27899999999985 43344555555555443
No 57
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=97.73 E-value=0.00031 Score=74.31 Aligned_cols=113 Identities=18% Similarity=0.253 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceE-EecCCCHHHHHHHhcccc
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQC-LIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~-L~pTaEvpl~~l~~~~~l 315 (396)
.+++..+++.+++.+.++||.+|.||.|.... -+ |- .+ |.+. +.++| |.=..+..+-.+....
T Consensus 138 l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~-~e--GA-----r~--F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G-- 205 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPMLTKAT-PE--GA-----RD--YLVPSRVHKGKFYALPQSPQLFKQLLMMSG-- 205 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC-SS--SS-----CC--CEEECSSSTTCEEECCSCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCC-CC--CC-----cc--ceecccccCCceEeCccCHHHHHHHHHhcC--
Confidence 46678899999999999999999999997542 12 21 11 3222 22344 5433333222222211
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIRIEE 377 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~~~e 377 (396)
+ =|+|++++|||+|-.... |.-||+|+|++.. ++-++..+..++|+..+.
T Consensus 206 ----~-~rvfqI~~~FR~E~~~t~-------r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~ 256 (585)
T 1c0a_A 206 ----F-DRYYQIVKCFRDEDLRAD-------RQPEFTQIDVETSFMTAPQVREVMEALVRHLW 256 (585)
T ss_dssp ----C-CEEEEEEEEECCCCCBTT-------BCSEEEEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred ----C-CceEEEeceeecCCCCCC-------cCcccceeeeeecCCCHHHHHHHHHHHHHHHH
Confidence 1 289999999999976432 6679999999885 444555666666655443
No 58
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=97.69 E-value=0.00035 Score=73.74 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceE-EecCCCHHHHHHHhcccc
Q 016049 241 VMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQC-LIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~-L~pTaEvpl~~l~~~~~l 315 (396)
.++...+++.+++.+.++||.+|.||.|.... -+ |- .+ |.+. +.++| |.=..+..+-.+....
T Consensus 144 l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~-~e--GA-----r~--F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G-- 211 (580)
T 1l0w_A 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTKST-PE--GA-----RD--FLVPYRHEPGLFYALPQSPQLFKQMLMVAG-- 211 (580)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCC-SS--SS-----CC--CEEECTTSTTEEEECCSCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCC-CC--CC-----CC--ccccccccCCceeECccCHHHHHHHHHHhc--
Confidence 46678899999999999999999999997542 12 21 11 3222 12344 5433333322222211
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEe-CCccchHHHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVF-CQPEESDSYHEELIRIE 376 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f-~~pe~S~~~~ee~l~~~ 376 (396)
+ =|+|++++|||+|-.... |.-||||+|++.. ++-++..+..++|+..+
T Consensus 212 ----~-~rvfqI~~~FR~E~~~~~-------r~pEFT~lE~e~af~d~~dvm~~~E~li~~i 261 (580)
T 1l0w_A 212 ----L-DRYFQIARCFRDEDLRAD-------RQPDFTQLDLEMSFVEVEDVLELNERLMAHV 261 (580)
T ss_dssp ----C-SEEEEEEEEECCCCCCSS-------CCSEEEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred ----c-CCeEEEeceeeCCCCCCC-------cCCCccceeeeecCCCHHHHHHHHHHHHHHH
Confidence 1 289999999999976432 6669999999885 44345555555555444
No 59
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.67 E-value=0.00025 Score=74.21 Aligned_cols=115 Identities=15% Similarity=0.212 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe--CCceEEecCCCHHHHHHHhccccCC
Q 016049 240 AVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE--GADQCLIGTAEIPVGGIHMDSILSE 317 (396)
Q Consensus 240 ~a~Le~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~--~~~l~L~pTaEvpl~~l~~~~~l~~ 317 (396)
..++..++++.+++++.++||.+|.||.|..... ++ | . ..|.+. +.++||.-..+..+-.+....
T Consensus 243 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~-eg-g-a------~~F~v~~~~~~~yL~~Spql~~k~ll~~g---- 309 (548)
T 3i7f_A 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS-EG-G-S------NIFEVKYFDRKAYLAQSPQLYKQMAIMGD---- 309 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSBC----------------------------CCBCSCTHHHHHHHHTTT----
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC-CC-C-c------ceeEEecCCCceEeccCHHHHHHHHHhcC----
Confidence 3456778889999999999999999999987752 21 1 1 123221 345777655454333332211
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEE-eCC-ccchHHHHHHHHHHH
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFV-FCQ-PEESDSYHEELIRIE 376 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~-f~~-pe~S~~~~ee~l~~~ 376 (396)
-=|+|++|+|||+|.....+ ..-||+|+|.+. |+. -++..+..++|+..+
T Consensus 310 ---~~rVfeI~~~FR~E~~~t~R------Hl~EFtmlE~e~af~~d~~d~m~~~E~li~~i 361 (548)
T 3i7f_A 310 ---FRKVFEVGPVFRAENSNTRR------HLTEFEGLDIEMEIVENYHECIDVMEKLFTFI 361 (548)
T ss_dssp ---CCEEEEEEEECCCSCCCSSS------CCSCEEEEEEEEECSSCTHHHHHHHHHHHHHH
T ss_pred ---cCcEEEEeeeEecCCCCCCC------cchhhhchhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 14899999999999753111 345999999985 653 456666666666543
No 60
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=97.56 E-value=0.00066 Score=72.04 Aligned_cols=112 Identities=15% Similarity=0.253 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHH-HCCCEeeecCCccchHHHHhhccCCCCCCcccEEEe----CCceEEecCCCHHHHHHHhcccc
Q 016049 241 VMLEMGLINWTLSEVI-KRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIE----GADQCLIGTAEIPVGGIHMDSIL 315 (396)
Q Consensus 241 a~Le~aLi~~~~d~~~-~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~----~~~l~L~pTaEvpl~~l~~~~~l 315 (396)
.+++..+++.+++.+. ++||.+|.||.|... .-+ |- . -|.+. +..+||.-..+.-.-.+....
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~s-t~~--GA-----~--~F~v~~~~~g~~~~L~qSpql~kq~l~v~g-- 215 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKR-TPG--GA-----K--EFLVPSREPGKFYSLPQSPQQFKQLLMVGG-- 215 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCC-CCS--SS-----C--CCEEECSSTTCEEECCSSTTHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccC-CCC--CC-----c--CceeccccCCcccccccCHHHHHHHHHhcc--
Confidence 4667788899999996 799999999999763 212 21 1 13232 234566544343322222211
Q ss_pred CCCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHH
Q 016049 316 SESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSS 382 (396)
Q Consensus 316 ~~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~ 382 (396)
+ =|+|++++|||+|..... |+-||+|+|++..-.. ++++++.++++++.
T Consensus 216 ----~-~rvfqi~~~FR~E~~~t~-------r~pEFt~lE~e~af~d------~~d~m~~~E~l~~~ 264 (617)
T 4ah6_A 216 ----L-DRYFQVARCYRDEGSRPD-------RQPEFTQIDIEMSFVD------QTGIQSLIEGLLQY 264 (617)
T ss_dssp ----C-SEEEEEEEEECCCSSCSS-------SCSEEEEEEEEEESCC------HHHHHHHHHHHHHH
T ss_pred ----c-CcEEEEEhheecccCCCC-------cCcceecceeeecCCC------HHHHHHHHHHHHHH
Confidence 1 289999999999965422 6889999999874322 23455555555544
No 61
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.51 E-value=0.0011 Score=64.17 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHH-HHhhccCCCCCC----cccEEEeCCceEEecCCCHHHHHHHhccccCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSV-VEKCGFQPRGAN----TQVYSIEGADQCLIGTAEIPVGGIHMDSILSESL 319 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~-~~~sG~~p~~~~----~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~ 319 (396)
..+.+.+++.+...||+++.+|.+..... +...+. |.... ...+++. +..+|+.+....+....+... ..
T Consensus 56 ~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~-~~~~par~~~d~~~l~-e~~vLRtsl~p~ll~~l~~N~---~~ 130 (294)
T 2rhq_A 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNL-PKSHPARDMQDSFYIT-DEILMRTHTSPVQARTMEKRN---GQ 130 (294)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTC-CTTCGGGCTTTSCBSS-SSEEECSSSHHHHHHHHHHTT---TC
T ss_pred HHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCC-CCCccccccCCcEEEc-CcceeeccCHHHHHHHHHhcC---CC
Confidence 45667777888899999998887765432 233332 21110 0135553 445666554444555444332 46
Q ss_pred CCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc-CCc
Q 016049 320 LPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL-GLH 386 (396)
Q Consensus 320 LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L-gLp 386 (396)
.|+|++++|+|||++... .. ...||+++|.+....+-+ +..+....+.+++.| |++
T Consensus 131 ~~~riFEiG~Vfr~d~~d----~~---h~~Ef~~Le~~~~g~~~d----f~dlKg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 131 GPVKIICPGKVYRRDSDD----AT---HSHQFTQIEGLVVDKNIK----MSDLKGTLELVAKKLFGAD 187 (294)
T ss_dssp SCEEEEEEEEEECCCCCB----TT---BCSEEEEEEEEEEESSCC----HHHHHHHHHHHHHHHHCTT
T ss_pred CCccEEEEcCEEecCCCC----CC---CCChhhEEEEEEECCCCC----HHHHHHHHHHHHHHHhCCC
Confidence 799999999999976421 11 235999999998865321 456778888899888 864
No 62
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.23 E-value=0.0019 Score=67.33 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=57.2
Q ss_pred eEEecCCCHHHHHHHhccccCCCCCCceEEEeccccccCcC-CCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHH
Q 016049 296 QCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFRTEAG-AAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIR 374 (396)
Q Consensus 296 l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag-~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~ 374 (396)
.+|+++....+....+. .......|+|++++|+|||++.. ..+ +.+||+|++......+.. +.++..
T Consensus 181 svLRTsLlPgLL~~lr~-N~~r~~~pvrLFEIG~VFr~d~~~d~t-------h~~Ef~qLagli~G~~vd----f~dLKg 248 (534)
T 2du3_A 181 LTLRSHMTTGWFITLSH-IADKLPLPIKLFSIDRCFRREQGEDAT-------RLYTYFSASCVLVDEELS----VDDGKA 248 (534)
T ss_dssp EEECSSHHHHHHHHHHT-TTTTSCSSEEEEEEEEEECCCTTCSSS-------CCSEEEEEEEEEECSSCC----HHHHHH
T ss_pred cccCccchhhHHHHHHH-HHhCCCCCeeEEEEeeEEecCcccccc-------ccceeeEEEEEEECCCCC----HHHHHH
Confidence 46666544433333221 12445789999999999998653 322 458999999998865322 356888
Q ss_pred HHHHHHHHcCCc-EEEE
Q 016049 375 IEEDLYSSLGLH-FKLL 390 (396)
Q Consensus 375 ~~e~il~~LgLp-yrvv 390 (396)
..+.+++.||+. ++..
T Consensus 249 ilE~LL~~LGi~~~r~~ 265 (534)
T 2du3_A 249 VAEALLRQFGFENFRFR 265 (534)
T ss_dssp HHHHHHGGGTCCEEEEE
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 899999999995 6664
No 63
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.13 E-value=0.0036 Score=65.41 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=53.1
Q ss_pred eEEecCCCHH-HHH-HHhccccCCCCCCceEEEeccccccCcC-CCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHH
Q 016049 296 QCLIGTAEIP-VGG-IHMDSILSESLLPLKYAAFSHCFRTEAG-AAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372 (396)
Q Consensus 296 l~L~pTaEvp-l~~-l~~~~~l~~~~LPlK~~~~~~cFR~Eag-~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~ 372 (396)
..+.-|+..| +.. +..+ ......|+|++++|+|||.+.. .. + +.+||+|++......+- -|..+
T Consensus 192 ~svLRTsLlPGLL~~vr~N--~~r~~~pvrlFEiGrVFr~D~~~d~---t----h~~ef~qLaglv~G~~v----dF~DL 258 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSSL--IKKRKLPLKLFSIDRCFRREQREDR---S----HLMSYHSASCVVVGEDV----SVDDG 258 (549)
T ss_dssp EEECCSTTHHHHHHHHHTT--TTTSCSSEEEEEEEEECCCCSSCSS---S----CCSCEEEEEEEEECTTC----CHHHH
T ss_pred ccccccccchhHHHHHHHH--HhcCCCCeEEEEEeeEEecCCcccC---c----CCCcceEEEEEEECCCC----CHHHH
Confidence 3344455555 222 2222 2345789999999999997652 11 1 34899999999887532 24678
Q ss_pred HHHHHHHHHHcCCc
Q 016049 373 IRIEEDLYSSLGLH 386 (396)
Q Consensus 373 l~~~e~il~~LgLp 386 (396)
....+.+++.||+.
T Consensus 259 KG~Le~ll~~LGi~ 272 (549)
T 2du7_A 259 KVVAEGLLAQFGFT 272 (549)
T ss_dssp HHHHHHHHGGGTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 88999999999983
No 64
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.06 E-value=0.00097 Score=65.63 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccch-HHHHhhccCCCCCC----cccEEEeCCceEEecCCCHH-HHHHHhccccCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRS-SVVEKCGFQPRGAN----TQVYSIEGADQCLIGTAEIP-VGGIHMDSILSES 318 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~-~~~~~sG~~p~~~~----~q~y~i~~~~l~L~pTaEvp-l~~l~~~~~l~~~ 318 (396)
..+.+-+.+.+...||+++.+|.+... ..+..-+ .|.+.. ..+|.+. +..+| -|+..| +.... ...
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln-~p~dhpaR~~~dt~~i~-e~~vL-RThtsp~~lr~l-----~~~ 181 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALN-IPGHHPARADHDTFWFD-TTRLL-RTQTSGVQIRTM-----KAQ 181 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTT-CCSSSHHHHHTTCCBSS-SSCEE-CSCTHHHHHHHH-----TTC
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhC-CCCCChhhcccccEEeC-CCcee-cccCCHHHHHHH-----HhC
Confidence 566777888889999999999987542 2333322 222110 1245554 33444 466666 33332 334
Q ss_pred CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHc
Q 016049 319 LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSL 383 (396)
Q Consensus 319 ~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~L 383 (396)
..|+|+++.|+|||.+... ....+|+|+|......+ -+ +..+....+.+++.|
T Consensus 182 ~~pirifeiGrVyR~d~d~--------th~p~fhqlegl~v~~~-v~---f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 182 QPPIRIIAPGRVYRNDYDQ--------THTPMFHQMEGLIVDTN-IS---FTNLKGTLHDFLRNF 234 (327)
T ss_dssp CSSCCBCCEECCBCSCCBT--------TBCSBCCEEEEEEEETT-CC---HHHHHHHHHHHHHHH
T ss_pred CCCeeEEeeccEEecCCCc--------ccCCcccEEEEEEECCC-CC---HHHHHHHHHHHHHHH
Confidence 6899999999999997321 14567999997765432 12 456667777777777
No 65
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.83 E-value=0.0055 Score=64.77 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=54.3
Q ss_pred EEecCCCHH-H-HHHHhccccCCCCCCceEEEeccccccCcC-CCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHH
Q 016049 297 CLIGTAEIP-V-GGIHMDSILSESLLPLKYAAFSHCFRTEAG-AAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373 (396)
Q Consensus 297 ~L~pTaEvp-l-~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag-~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l 373 (396)
.+.-|+..| + ..+..+ ......|+|++++|+|||.+.. . .+ ...||+|++......+- -|..+.
T Consensus 200 sVLRTsLlPGLL~~vr~N--~~R~~~pvRLFEIGrVFR~D~~lD---at----h~~Ef~qLeGlv~G~~v----dF~DLK 266 (648)
T 2odr_B 200 LTLRSHMTSGWFLTVSDL--MNKKPLPFKLFSIDRCFRREQKED---KS----HLMTYHSASCAIAGEGV----DINDGK 266 (648)
T ss_dssp EEECCCTHHHHHHHHHHH--TTTSCSCEEEEEEEEEECCCSCCC---SS----CCSEEEEEEEEEECTTC----CHHHHH
T ss_pred CcccccchhhHHHHHHHH--HhcCCCCeEEEEEeeEEecCcccc---cc----CCCcceEEEEEEECCCC----CHHHHH
Confidence 344455666 2 222222 2345789999999999997642 1 11 24799999999887532 146788
Q ss_pred HHHHHHHHHcCCc-EEEE
Q 016049 374 RIEEDLYSSLGLH-FKLL 390 (396)
Q Consensus 374 ~~~e~il~~LgLp-yrvv 390 (396)
...+.+++.||+. ++..
T Consensus 267 GvLE~LL~~LGi~~vrfr 284 (648)
T 2odr_B 267 AIAEGLLSQFGFTNFKFI 284 (648)
T ss_dssp HHHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHHHcCCCeEEEE
Confidence 8999999999984 6554
No 66
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.81 E-value=0.0058 Score=64.72 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=54.3
Q ss_pred EEecCCCHH-H-HHHHhccccCCCCCCceEEEeccccccCcC-CCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHH
Q 016049 297 CLIGTAEIP-V-GGIHMDSILSESLLPLKYAAFSHCFRTEAG-AAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373 (396)
Q Consensus 297 ~L~pTaEvp-l-~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag-~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l 373 (396)
.+.-|+..| + ..+..+ ......|+|++++|+|||.+.. . .+ ...||+|++......+- -|..+.
T Consensus 200 sVLRTSLlPGLL~~lr~N--~~R~~~pvRLFEIGrVFR~D~~lD---at----h~~Ef~qLeGlv~G~~v----dF~DLK 266 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDL--MNKKPLPFKLFSIDRCFRREQKED---KS----HLMTYHSASCAIAGEGV----DINDGK 266 (665)
T ss_dssp EEECCCTHHHHHHHHHHH--TTTSCSCEEEEEEEEEECCCSCCC---SS----CCSEEEEEEEEEECTTC----CHHHHH
T ss_pred CcccccchhhHHHHHHHH--HhcCCCCeEEEEEeeEEecCcccc---cc----CCCcceEEEEEEECCCC----CHHHHH
Confidence 344455666 2 222222 2345789999999999997642 1 11 24799999999887532 146788
Q ss_pred HHHHHHHHHcCCc-EEEE
Q 016049 374 RIEEDLYSSLGLH-FKLL 390 (396)
Q Consensus 374 ~~~e~il~~LgLp-yrvv 390 (396)
...+.+++.||+. ++..
T Consensus 267 GvLE~LL~~LGi~~vrfr 284 (665)
T 2odr_A 267 AIAEGLLSQFGFTNFKFI 284 (665)
T ss_dssp HHHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHHHcCCCeEEEE
Confidence 8999999999984 6554
No 67
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.79 E-value=0.0061 Score=64.71 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=54.3
Q ss_pred EEecCCCHH-H-HHHHhccccCCCCCCceEEEeccccccCcC-CCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHH
Q 016049 297 CLIGTAEIP-V-GGIHMDSILSESLLPLKYAAFSHCFRTEAG-AAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELI 373 (396)
Q Consensus 297 ~L~pTaEvp-l-~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag-~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l 373 (396)
.+.-|+..| + ..+..+ ......|+|++++|+|||.+.. . .+ ...||+|++......+- -|..+.
T Consensus 200 sVLRTSLlPGLL~~vr~N--~~R~~~pvRLFEIGrVFR~D~~lD---at----h~~Ef~qLeGlv~G~~v----DF~DLK 266 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDL--MNKKPLPFKLFSIDRCFRREQKED---KS----HLMTYHSASCAIAGEGV----DINDGK 266 (685)
T ss_dssp EEECCCTHHHHHHHHHHH--TTTSCSCEEEEEEEEEECCCSCCC---SS----CCSEEEEEEEEEECTTC----CHHHHH
T ss_pred CcccccchhhHHHHHHHH--HhCCCCCeEEEEeccEEecCcccc---cc----CCCcceEEEEEEECCCC----CHHHHH
Confidence 344455666 2 222222 2345789999999999997642 1 11 23799999999887532 146788
Q ss_pred HHHHHHHHHcCCc-EEEE
Q 016049 374 RIEEDLYSSLGLH-FKLL 390 (396)
Q Consensus 374 ~~~e~il~~LgLp-yrvv 390 (396)
...+.+++.||+. ++..
T Consensus 267 GvLE~LL~~LGi~~vrfr 284 (685)
T 2odr_D 267 AIAEGLLSQFGFTNFKFI 284 (685)
T ss_dssp HHHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHHHcCCCeEEEE
Confidence 8999999999984 6554
No 68
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.74 E-value=0.0074 Score=64.19 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=55.1
Q ss_pred eEEecCCCHH-H-HHHHhccccCCCCCCceEEEeccccccCcC-CCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHH
Q 016049 296 QCLIGTAEIP-V-GGIHMDSILSESLLPLKYAAFSHCFRTEAG-AAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEEL 372 (396)
Q Consensus 296 l~L~pTaEvp-l-~~l~~~~~l~~~~LPlK~~~~~~cFR~Eag-~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~ 372 (396)
..+.-|+..| + ..+..+ ......|+|++++|+|||.+.. . .+ ...||+|++......+- -|..+
T Consensus 199 ~sVLRTSLlPGLL~~vr~N--~~R~~~pvRLFEIGrVFR~D~~lD---at----h~~EfhqLeGlv~G~~v----DF~DL 265 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSDL--MNKKPLPFKLFSIDRCFRREQKED---KS----HLMTYHSASCAIAGEGV----DINDG 265 (701)
T ss_dssp EEEECCCTHHHHHHHHHHH--TTTSCSCEEEEEEEEEECCCSCCC---SS----CCSEEEEEEEEEECTTC----CHHHH
T ss_pred cCcccccchhhHHHHHHHH--HhCCCCCeEEEEEeeEEccCcccc---cc----CCCcceEEEEEEECCCC----CHHHH
Confidence 3344566666 2 222222 2345789999999999997642 1 11 24799999999887532 14678
Q ss_pred HHHHHHHHHHcCCc-EEEE
Q 016049 373 IRIEEDLYSSLGLH-FKLL 390 (396)
Q Consensus 373 l~~~e~il~~LgLp-yrvv 390 (396)
....+.+++.||+. ++..
T Consensus 266 KGvLE~LL~~LGi~~vrfr 284 (701)
T 2odr_C 266 KAIAEGLLSQFGFTNFKFI 284 (701)
T ss_dssp HHHHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHHHHcCCCeEEEE
Confidence 88999999999984 6554
No 69
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.67 E-value=0.018 Score=60.80 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHH-HHhhccCCCCCCcccEEEeC---Cce-EEecCCCHH-HHH-HHhccccCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSV-VEKCGFQPRGANTQVYSIEG---ADQ-CLIGTAEIP-VGG-IHMDSILSE 317 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~-~~~sG~~p~~~~~q~y~i~~---~~l-~L~pTaEvp-l~~-l~~~~~l~~ 317 (396)
+.+.+.+++.+...||+++.++.|+..+. +..-+..+.. . ..+++.+ .++ +|| |+-.| +.. +..|. .
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~-~-~~v~L~NPis~e~svmR-tsLlpgLL~~l~~N~--~- 467 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISA-T-KAVHISNPKTAEFQVAR-TTLLPGLLKTIAANR--K- 467 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTS-S-CCCBBSSCSSGGGSEEC-SCSHHHHHHHHHHTT--T-
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCC-C-CeEEEcCCCchhHhHHH-HHHHHHHHHHHHHHh--c-
Confidence 45566778888999999999999999884 4455532221 1 3455554 233 455 44455 444 33342 2
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
+..|+|+|++|+|||.+... .. ..+|+.++......... . |..+....+.+++.||++
T Consensus 468 ~~~~vrlFEiG~Vf~~d~~~----~~---~~~e~~~la~~~~g~~~-~---f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 468 MPLPLKLFEISDIVIKDSNT----DV---GAKNYRHLCAVYYNKNP-G---FEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp SCSCEEEEEEEEEEEECTTS----TT---SEEEEEEEEEEEESSSC-C---HHHHHHHHHHHHHHTTCC
T ss_pred CCCceEEEEeeeEEecCCcc----cc---CCccccEEEEEEECCCC-C---HHHHHHHHHHHHHHcCCC
Confidence 34699999999999976532 11 25788898887665432 2 566778888999999985
No 70
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=96.44 E-value=0.045 Score=50.07 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---Cce-EEecCCCHHHHHH-HhccccCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQ-CLIGTAEIPVGGI-HMDSILSESL 319 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l-~L~pTaEvpl~~l-~~~~~l~~~~ 319 (396)
+.+.+.+++.+...||+|+.|-.|+..+.+...+..+. ....++.+ .++ +|++|.-..+... ..|. ....
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~---~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~--~r~~ 81 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPS---KNLVMLLNPLSADLNCMRQTLLFGGLESIAHNA--NRKN 81 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCG---GGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCc---CCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHh--cCCC
Confidence 45666777888899999999999999987766553322 23566654 333 5555443334443 3332 3334
Q ss_pred CCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCC--ccc-----hHHHHHHHHHHHHHHHHHcCCc
Q 016049 320 LPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQ--PEE-----SDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 320 LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~--pe~-----S~~~~ee~l~~~e~il~~LgLp 386 (396)
-++|++++|+||+.+......+. .+-..+|..++-...... ++. ...-|..+....+.+++.||++
T Consensus 82 ~~v~lFEiG~Vf~~~~~~~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 82 ADLKFFEFGNCYHFDAEKKNPEK-VLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp -CCEEEEEEEEEEECC-----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBC
T ss_pred CCeeEEEeeeEEecCcccccccc-cccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 56999999999997653210000 001246777776655432 110 1223778999999999999987
No 71
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=96.22 E-value=0.073 Score=48.66 Aligned_cols=140 Identities=15% Similarity=0.182 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---CceEEecCCCHH-HHH-HHhccccCCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQCLIGTAEIP-VGG-IHMDSILSESL 319 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l~L~pTaEvp-l~~-l~~~~~l~~~~ 319 (396)
+.+.+.+++.+...||+|+.|-.|+..+.+...+..+. ....++.+ .++-..-|+-.| +.. +..|. ....
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~---~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~--~r~~ 81 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPR---EMAVELMNPLSQELNCMRQTLLFGGLETLSHNL--RRKH 81 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCG---GGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHH--TTTC
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCc---CCeEEecCCccHHHHHHHHHhHHHHHHHHHHHH--cCCC
Confidence 45677778888999999999999999987766543322 12344543 344444444455 443 33332 3333
Q ss_pred CCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cchH------HHHHHHHHHHHHHHHHcCCc---EEE
Q 016049 320 LPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EESD------SYHEELIRIEEDLYSSLGLH---FKL 389 (396)
Q Consensus 320 LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S~------~~~ee~l~~~e~il~~LgLp---yrv 389 (396)
-++|++++|+||+.+......+. .+-...|..++-+...... ..+| .-|..+....+.+++.||++ ++.
T Consensus 82 ~~~~lFEiG~Vf~~~~~~~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~ 160 (213)
T 3ica_A 82 LSLYLFEWGKCYRFHAAKRTDET-PLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTL 160 (213)
T ss_dssp SEEEEEEEEEEEEEECCCC--CC-SSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred CCeeEEEeeeEEecCCccccccc-cccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEE
Confidence 35999999999997643210000 0112467777766554321 1111 12678999999999999997 655
Q ss_pred E
Q 016049 390 L 390 (396)
Q Consensus 390 v 390 (396)
.
T Consensus 161 ~ 161 (213)
T 3ica_A 161 K 161 (213)
T ss_dssp E
T ss_pred e
Confidence 3
No 72
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=96.00 E-value=0.021 Score=62.45 Aligned_cols=129 Identities=9% Similarity=0.011 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcc-cEEEeC---Cc-eEEecCCCHH-HHH-HHhccccCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQ-VYSIEG---AD-QCLIGTAEIP-VGG-IHMDSILSE 317 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q-~y~i~~---~~-l~L~pTaEvp-l~~-l~~~~~l~~ 317 (396)
+.+.+.+++.+...||+++.+..|+..+.+...+ |. .. .+++.+ .+ -+|| |+-.| +.. +..|. ..
T Consensus 496 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~--~~---~~~~v~L~NPis~e~svLR-tsLlpgLL~~l~~N~--~r 567 (795)
T 2rhq_B 496 QHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFA--LQ---ERPTISLLMPMSEAHATLR-QSLLPHLIEATAYNV--AR 567 (795)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTC--SS---CCCCEECSSCSCTTSSEEC-SCSHHHHHHHHHHHH--HT
T ss_pred HHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhC--CC---CCceEEEcCCCchhhhhhh-hccHHHHHHHHHHHh--cC
Confidence 4567778888899999999999999887663322 31 23 456653 23 3556 44555 444 33332 34
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cchHH------HHHHHHHHHHHHHHHcCCcEEE
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EESDS------YHEELIRIEEDLYSSLGLHFKL 389 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S~~------~~ee~l~~~e~il~~LgLpyrv 389 (396)
...|+|+|++|+|||.+... ++ . +||.++........ ...|. -|..+....+.+++.||++++.
T Consensus 568 ~~~~vrlFEiG~Vf~~d~~~---~~----~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~~~~ 638 (795)
T 2rhq_B 568 KNKDVRLYEIGRVFFGNGEG---EL----P-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSY 638 (795)
T ss_dssp TCCCEEEEEEEEEEECCCTT---SC----C-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEEeeEEecCCcc---cC----c-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 46799999999999964321 11 2 89999998877643 11221 3678999999999999986543
No 73
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=95.81 E-value=0.13 Score=52.12 Aligned_cols=114 Identities=13% Similarity=0.146 Sum_probs=71.4
Q ss_pred CCEeeec-CCccchH-HHHhhccCCCCC----CcccEEEeCCceEEecCCCHH-HHHHHhccccCCCCCCceEEEecccc
Q 016049 259 GFTPLTT-PEIVRSS-VVEKCGFQPRGA----NTQVYSIEGADQCLIGTAEIP-VGGIHMDSILSESLLPLKYAAFSHCF 331 (396)
Q Consensus 259 Gy~ei~t-P~lv~~~-~~~~sG~~p~~~----~~q~y~i~~~~l~L~pTaEvp-l~~l~~~~~l~~~~LPlK~~~~~~cF 331 (396)
||+++.+ |.++... .+...+. |.+. ....|.+.+ ...| .|.+.| ...+.... .| |++..|.||
T Consensus 73 Gf~e~~~~~~v~s~~~NFd~L~~-p~dHpaR~~~Dtfyi~~-~~vL-RThts~~~~~~l~~~------~~-k~~~~G~Vy 142 (415)
T 3cmq_A 73 LFSVYDNLSPVVTTWQNFDSLLI-PADHPSRKKGDNYYLNR-THML-RAHTSAHQWDLLHAG------LD-AFLVVGDVY 142 (415)
T ss_dssp CCEEECCCCSEEEHHHHTGGGTC-CTTCGGGCGGGSCBSSS-SEEE-CSSGGGGHHHHHHTT------CS-EEEEEEEEE
T ss_pred CcEEEcCCCccccHHHHHHHhCC-CCCCCcccccceEEecC-CeEE-cCCCcHHHHHHHHHC------CC-CEEEeeeEE
Confidence 8999998 7776543 4445543 3221 124677753 3444 466666 34443321 35 999999999
Q ss_pred ccCcCCCCCCCCCcceeeeEEEeeEEEeC------------------------C-------ccchHHHHHHHHHHHHHHH
Q 016049 332 RTEAGAAGTATRGLYRVHQFSKLEMFVFC------------------------Q-------PEESDSYHEELIRIEEDLY 380 (396)
Q Consensus 332 R~Eag~~G~~t~GL~RvhQF~kvE~f~f~------------------------~-------pe~S~~~~ee~l~~~e~il 380 (396)
|++.-... ...+|+|+|...+- . ++..+..+..+....+.++
T Consensus 143 R~D~~da~-------h~n~fhQ~egv~lfe~g~~f~~~~~~~~la~~~~g~~~~~~~~~~~~~~vd~~f~dlKg~le~ll 215 (415)
T 3cmq_A 143 RRDQIDSQ-------HYPIFHQLEAVRLFSKHELFAGIKDGESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLM 215 (415)
T ss_dssp CCCCCBTT-------BCSEEEEEEEEEEEEHHHHTTTSTTGGGCCSBCCCCCCSSCCTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred eccchhhh-------hhHHhcCCCcEEEEeccceeccccccceEEEEEecCcccccccccccccccccHHHHHHHHHHHH
Confidence 99853322 57789998877651 0 0112234678889999999
Q ss_pred HHc-CCc--EEE
Q 016049 381 SSL-GLH--FKL 389 (396)
Q Consensus 381 ~~L-gLp--yrv 389 (396)
+.| |++ ++.
T Consensus 216 ~~lfg~~~~~~~ 227 (415)
T 3cmq_A 216 AHLFGDELEIRW 227 (415)
T ss_dssp HHHHCTTCCEEE
T ss_pred HHHcCCCceEEE
Confidence 997 985 554
No 74
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=95.17 E-value=0.064 Score=58.51 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC---Cce-EEecCCCHH-HHH-HHhccccCCC
Q 016049 245 MGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG---ADQ-CLIGTAEIP-VGG-IHMDSILSES 318 (396)
Q Consensus 245 ~aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~---~~l-~L~pTaEvp-l~~-l~~~~~l~~~ 318 (396)
+.+.+.+++.+...||+|+.+-.|+..+.+... +.. . ..+++.+ .++ +|+++ -.| +.. +..|. ...
T Consensus 492 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l---~~~-~-~~v~L~NPis~d~svLRts-LlpgLL~~l~~N~--~r~ 563 (785)
T 1b7y_B 492 YRKEQRLREVLSGLGFQEVYTYSFMDPEDARRF---RLD-P-PRLLLLNPLAPEKAALRTH-LFPGLVRVLKENL--DLD 563 (785)
T ss_dssp HHHHHHHHHHHHHHTCEECCCCSEECTTHHHHT---TCC-C-CSCEESSCSSTTSSEECSC-SHHHHHHHHHHHH--HHS
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHhc---CCC-C-CeEEEcCCCchhhhhhhhh-hHHHHHHHHHHHh--hcC
Confidence 556777888889999999999999998766432 321 2 3456654 233 55544 444 444 33332 233
Q ss_pred -CCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCcc-chH-----HHHHHHHHHHHHHHHHcCCcEEEE
Q 016049 319 -LLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPE-ESD-----SYHEELIRIEEDLYSSLGLHFKLL 390 (396)
Q Consensus 319 -~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe-~S~-----~~~ee~l~~~e~il~~LgLpyrvv 390 (396)
..|+|+|++|+||| + +||.++......... ..| .-|..+....+.+++.||+.++..
T Consensus 564 ~~~~vrlFEiG~Vf~-~--------------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi~~~~~ 627 (785)
T 1b7y_B 564 RPERALLFEVGRVFR-E--------------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLAFRVE 627 (785)
T ss_dssp CCSCEEEEEEEEEES-S--------------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCCCeEEEEEeeeec-c--------------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCCceEEe
Confidence 57999999999998 2 699999988876531 111 125778899999999999876543
No 75
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.42 E-value=7.6 Score=36.14 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.+-++..+.+.+..+++.++++.....+++..-.+..+.++|..++..++.++..+|.++.++.+++..
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~ 122 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKR 122 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666665555443445566667777777777777776666666655544
No 76
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.36 E-value=6.2 Score=33.68 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----CchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVANKMKGKL-----EPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~-----~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+.+-+++-+++.+.+.|+++...+.+++-..+ .....+.+..+..++++++.+|+.+..+++.++..
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555555442211 01223556667777777777777777777766653
No 77
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=83.21 E-value=5.1 Score=31.12 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
...-.|.++.+.+...++.+..+|++..++++.. +++...|+.++..-+.++..+.+++
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsT---------K~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKAT---------KAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344788999999999999999999999987642 2456666666766666666666554
No 78
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=82.08 E-value=4 Score=44.51 Aligned_cols=124 Identities=11% Similarity=0.018 Sum_probs=77.7
Q ss_pred HHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeC----CceEEecCCCHHHHHH-HhccccCCCCCCc
Q 016049 248 INWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEG----ADQCLIGTAEIPVGGI-HMDSILSESLLPL 322 (396)
Q Consensus 248 i~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~----~~l~L~pTaEvpl~~l-~~~~~l~~~~LPl 322 (396)
.+.+++.+...||+|+.|-.|+..+.....| +. + ...++.+ +.-+|++|.=..+... ..|. ....-++
T Consensus 495 ~~~~r~~l~~~G~~Evitysf~~~~~~~~~~--~~--~-~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~--~r~~~~v 567 (795)
T 3pco_B 495 LKRVKTLLNDKGYQEVITYSFVDPKVQQMIH--PG--V-EALLLPSPISVEMSAMRLSLWTGLLATVVYNQ--NRQQNRV 567 (795)
T ss_dssp HHHHHHHHHHTTCEECCCCSEECHHHHHHHS--SS--C-CCCBCSSCSCSTTCEECSSSHHHHHHHHHHHH--TSSCCCC
T ss_pred HHHHHHHHHHCCCeeeeccCcCCHHHHHhhC--CC--C-CeEEEcCCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCCc
Confidence 4455667788999999999999999887765 21 1 2334443 2345665544444443 3332 4445679
Q ss_pred eEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCc-cchH------HHHHHHHHHHHHHHHHcCC
Q 016049 323 KYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQP-EESD------SYHEELIRIEEDLYSSLGL 385 (396)
Q Consensus 323 K~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~p-e~S~------~~~ee~l~~~e~il~~LgL 385 (396)
|+|++|.||....... . ..+|..++-....... ...| .-|..+....+.++..||+
T Consensus 568 ~lFEiG~Vf~~~~~~~----~---~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 568 RIFESGLRFVPDTQAP----L---GIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEEEEEEECTTSS----T---TEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSC
T ss_pred cEEEeeeEEecCCCcc----c---CcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999998754321 1 1356666655443321 1111 1267899999999999997
No 79
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.48 E-value=24 Score=29.94 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hccCCchhHHHHHHHHHhHHHhHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKM-----KGKLEPSERQKLIEEGKNLKEGLVTLEEDLVK 163 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i-----~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~ 163 (396)
|+++.+.++...+..+++.+..+...+-.++ +......+.+++..+...|..++..||.++..
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777776666666665554444443221 11111234567888888888888888877654
No 80
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=71.67 E-value=33 Score=26.59 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc----cCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAVANKMKG----KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~~----~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
++..+-.+++.|.++...+..+|.. ..+......+..+...+..+|..+......|++
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888754 134455677778888888888888877766654
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.56 E-value=7.3 Score=27.82 Aligned_cols=34 Identities=29% Similarity=0.238 Sum_probs=28.6
Q ss_pred CchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 136 EPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 136 ~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
.+.|.++|+.+..+|+.++.+|.++..++..++.
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999998888887764
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.62 E-value=5.7 Score=40.94 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-------C--chhHHHHHHHHHhHHHhHHHHHHHH
Q 016049 103 VLELYEKMLNVQKEVDRLREERNAVANKMKGKL-------E--PSERQKLIEEGKNLKEGLVTLEEDL 161 (396)
Q Consensus 103 v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~-------~--~~~~~~l~~~~~~lk~~l~~le~~~ 161 (396)
+..+++.+++-+.+..+.....|+++.++.... + -..+..|+..++++..+|+.||..+
T Consensus 87 ~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 87 TTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666664432110 0 0223445555555566666666543
No 83
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=67.55 E-value=31 Score=28.42 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC--chhHHHHHHHHHhHHHhHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE--PSERQKLIEEGKNLKEGLVTLEEDL 161 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~--~~~~~~l~~~~~~lk~~l~~le~~~ 161 (396)
|.+-.|-...++++.+++.+.++|..+......+.. ...+..|..++..-...|.+|....
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~f 68 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGL 68 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777888888888888877654332 1223344444444444444444333
No 84
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=62.61 E-value=14 Score=24.50 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=24.6
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHcC
Q 016049 147 GKNLKEGLVTLEEDLVKLTDELQQEAQCI 175 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l~~~~~~l 175 (396)
..+.|++|..++.++..+.++-+++++++
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56788899999999999999988888764
No 85
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=62.28 E-value=64 Score=26.44 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH--HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 016049 105 ELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSER--QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTHPD 182 (396)
Q Consensus 105 ~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~--~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h~~ 182 (396)
+|-++......++--.+.+.....+++.. ++++. ..+..+ ...++.++.++.+++..+-+....-++.--+.
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~--DPDevNK~tl~~R----~~~Vs~lq~KiaeLKrqLAd~va~~k~~~k~~ 99 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEK--DPDELNKRTLTDR----EGVAVSIQAKIDELKRQLADRIATGKNLGKEQ 99 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 33445555555555444444444444422 34433 333322 34566777778888888887888888877777
Q ss_pred CCCCCCCC
Q 016049 183 VPVGGEDC 190 (396)
Q Consensus 183 vP~g~ee~ 190 (396)
=|-|-|++
T Consensus 100 DPTG~EpD 107 (113)
T 4fi5_A 100 DPTGVEPG 107 (113)
T ss_dssp --------
T ss_pred CCCCCCCc
Confidence 77775543
No 86
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.38 E-value=49 Score=27.36 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
.+|.++......+..+++.++..+..+...+.
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 66778888888889999999999888888774
No 87
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.31 E-value=28 Score=34.50 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
..+..+++.+++.++++.+....-|+++.++
T Consensus 88 ~y~~~~~~~lk~~~~q~~dndn~~~e~s~eL 118 (390)
T 1deq_A 88 TLTKNIVELMRGDFAKANNNDNTFKQINEDL 118 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 4466777888888887777777777777655
No 88
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.24 E-value=58 Score=25.24 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 110 MLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 110 ~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
..-++-+++.|+.+.+.++.+. +++......+..+...|..+....++.+..++-.
T Consensus 22 I~lLqmEieELKekN~~L~~e~---------~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEV---------QNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445557778887777777643 2333333334445555555555555555555544
No 89
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.40 E-value=48 Score=27.43 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCC
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIP 176 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lP 176 (396)
++|..+++.|+.+|.+.++++..+..+...+-.+|+
T Consensus 74 qeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 74 EELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 344455555555555555555555544444434433
No 90
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.26 E-value=29 Score=28.46 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=45.8
Q ss_pred CCccCCCccccccchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHH
Q 016049 63 GGVAVKPQWKAAIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQK 142 (396)
Q Consensus 63 ~~~~~~~~~k~mlD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~ 142 (396)
+|..++...+.-+.|+-+..|.....+.+..+. .+++++-+-+.+.++....+.-|+++---...... ....+++.
T Consensus 12 ~~~~~~~~~~~~~ei~~L~~~L~~AEeaL~~Kq--~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~--aERadREk 87 (110)
T 2v4h_A 12 SGLVPRGSHMASMQLEDLRQQLQQAEEALVAKQ--ELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ--AERHAREK 87 (110)
T ss_dssp -CCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred cCCCcchhHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchhhHHH
Confidence 444555555556778888888888888887653 33455544444444444444444444333322221 11223444
Q ss_pred HHHHHHhHHHhHHHH
Q 016049 143 LIEEGKNLKEGLVTL 157 (396)
Q Consensus 143 l~~~~~~lk~~l~~l 157 (396)
+..+..+|.+++..|
T Consensus 88 l~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 444444444444433
No 91
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=57.89 E-value=26 Score=26.12 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
..++.++++.++-+|+.+.+.+|.+
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQ 28 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQ 28 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred hHHHHHHHHHHHHHHHHHHhccchH
Confidence 4677888889999999998888764
No 92
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=57.13 E-value=32 Score=27.39 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcC
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCI 175 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~l 175 (396)
...+.++++.|+-+|+.|.|.+|.+= +=..-..|.-+...+.++|+.+.+.+..-...+...+-.|
T Consensus 21 ~a~~~~~lk~E~~~lk~E~~stSaQD----eFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFNNSISAQD----NYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTT----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888887541 0011234566666777777777777777666666554443
No 93
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=56.43 E-value=12 Score=29.65 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=37.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 98 ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 98 ~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
.+-++|..+-+.+|.++...-....+.+.+..... . ..+...|..+...|+.++..+..+.+.+..++.
T Consensus 18 ls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~--L-E~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 18 FTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHH--L-ENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777766666666555544210 0 112334555555555555555555555544443
No 94
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=54.35 E-value=69 Score=24.31 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 108 EKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 108 ~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+++..++.+.+....+-..+..+++.... ....+-.++..|+..+..++.++..+++.+..
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~--~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEE--RSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444444332110 11223344455555555555555555555443
No 95
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=52.98 E-value=28 Score=21.66 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHH
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLT 165 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~ 165 (396)
..+|++++..||.+|..|+=++..+.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655554443
No 96
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.24 E-value=54 Score=27.24 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
.+|.++......+..+++.+++.+..+...+..... ..-.+.+.+...|..+|.++..+..++
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~-----~~~~~l~~~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKG-----RYCMQLAQIQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888888888877643111 111223344444444554444444433
No 97
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=51.51 E-value=76 Score=32.22 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC--c-------hhHHHHHHHHHhHHHhHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLE--P-------SERQKLIEEGKNLKEGLVTLEEDL 161 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~--~-------~~~~~l~~~~~~lk~~l~~le~~~ 161 (396)
..+..+++.|++.+++..+....-|+++..+..+.. . .....|+.-++++..+|+.||..+
T Consensus 86 ~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 86 RVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788899999999998888888888876532110 0 122334455555555666666544
No 98
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.99 E-value=1.1e+02 Score=27.94 Aligned_cols=29 Identities=3% Similarity=0.015 Sum_probs=15.1
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHcCC
Q 016049 148 KNLKEGLVTLEEDLVKLTDELQQEAQCIP 176 (396)
Q Consensus 148 ~~lk~~l~~le~~~~~l~~~l~~~~~~lP 176 (396)
.++...+.++++++..+..+...+...||
T Consensus 146 ~~~~~~~~e~~~e~~~l~~~r~~l~~~i~ 174 (256)
T 3na7_A 146 SLVENEVKNIKETQQIIFKKKEDLVEKTE 174 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33444455555555555555555555443
No 99
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.88 E-value=98 Score=24.47 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=16.6
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
+..+++.+..++..+++++.+++.+++..+.
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444555555555555566666666553
No 100
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=47.59 E-value=58 Score=36.61 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=11.5
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLT 165 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~ 165 (396)
|.+++..|+++...|+.++.+++
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555544
No 101
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=47.23 E-value=47 Score=26.88 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
-.||++...+..+++-|+-........+
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~ 46 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQL 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777766655555443
No 102
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=47.13 E-value=73 Score=22.71 Aligned_cols=9 Identities=44% Similarity=0.734 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 016049 159 EDLVKLTDE 167 (396)
Q Consensus 159 ~~~~~l~~~ 167 (396)
++...++++
T Consensus 55 eevkkleee 63 (67)
T 1lq7_A 55 EEVKKLEEE 63 (67)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.29 E-value=49 Score=33.71 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=27.7
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 016049 139 ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNM 178 (396)
Q Consensus 139 ~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~ 178 (396)
+..++..+.++.++++.++.++...+..++.++...++--
T Consensus 545 ~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666667777777777778888888888887776543
No 104
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=46.09 E-value=1.1e+02 Score=24.17 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016049 102 LVLELYEKMLNVQKEVDRLREERNAVAN 129 (396)
Q Consensus 102 ~v~~l~~~~r~~~~~~~~lr~~rn~lsk 129 (396)
.+..|.+.+..+..++..++...+.+.+
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455566666666666666666666644
No 105
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=45.36 E-value=36 Score=36.69 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCCEeeecCCccchHHHHhhccCCCCCCcccEEEeCCceEEecCCCHHHHHHHhccccCCCCCCceEE
Q 016049 246 GLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYA 325 (396)
Q Consensus 246 aLi~~~~d~~~~~Gy~ei~tP~lv~~~~~~~sG~~p~~~~~q~y~i~~~~l~L~pTaEvpl~~l~~~~~l~~~~LPlK~~ 325 (396)
.+.+-+++++.++|.+.+.+-.+|+.. .. .+.+....-.++..++..... ..-+-+++
T Consensus 64 eir~~f~~ff~~~gh~~~~s~~lvp~~-----------dp---------tllft~agm~~fkp~~~~g~~--~p~~~~~~ 121 (739)
T 2ztg_A 64 EMREYYLNFFERRGHGRIERYPVVARW-----------RT---------DIYLTIASIADFQPFVTSGVA--PPPANPLT 121 (739)
T ss_dssp HHHHHHHHHHHTTTCEECCCCCSBCTT-----------CS---------SBSBCCSGGGGGTTTTTTSSS--CCSSSSEE
T ss_pred HHHHHHHHHHHHCCCEEeCCcCcCCCC-----------CC---------CceeeecChhhCcHhHhCCCC--CCCCCCcc
Confidence 455566677788999998887776421 11 111111111122222210111 11246788
Q ss_pred EeccccccCcCCCCCCCCC-cceeeeE-EEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 326 AFSHCFRTEAGAAGTATRG-LYRVHQF-SKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 326 ~~~~cFR~Eag~~G~~t~G-L~RvhQF-~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
...+|-|.... +.-| .-|=|+| .|.--|.|..|+.-+-.=++.+..+.++++.|||+
T Consensus 122 ~~Q~ciR~~D~----envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l~~~g~~ 180 (739)
T 2ztg_A 122 ISQPCIRLDDL----DSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNELGVK 180 (739)
T ss_dssp EEEEEECGGGG----GGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHHHTCC
T ss_pred cccccccCccc----ccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHHHHhCCC
Confidence 88999996321 2233 2266666 57888899877532222367889999999889997
No 106
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=44.58 E-value=60 Score=27.91 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhhccC------CchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 110 MLNVQKEVDRLR-EERNAVANKMKGKL------EPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 110 ~r~~~~~~~~lr-~~rn~lsk~i~~~~------~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+..++.+++.|+ .+|-++.+.|+... +..+..+. |++...++..+..+++.|..
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aa-------k~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYN-------KKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHH-------HHHHHHHHHHHHHHHHHHhh
Confidence 567888899994 48888888875422 22222222 45556666666666666544
No 107
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=44.50 E-value=31 Score=32.85 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 317 ESLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 317 ~~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
...-|.+.+++-+|.|.-.|-+|..-.-|.+.+||.- ..=-.|++. -+++-+-|+.|||.
T Consensus 67 lGpePw~~AYVqPsRRP~DGRYGeNPNRLq~yyQfQV---ilKPsP~ni-------QeLYL~SL~alGId 126 (311)
T 3rf1_A 67 LGKKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQV---LIKPSPDNI-------QELYLKSLENLGFD 126 (311)
T ss_dssp SSSSCEEEEEEEEEECGGGCCTTCCSSCCSEEEEEEE---EEESCCTTH-------HHHHHHHHHHTTCC
T ss_pred cCCCcceeeeeccCCCCCCCCcCCCchhhhhheeeEE---EEcCCCccH-------HHHHHHHHHHhCCC
Confidence 3456999999999999999999987787888888762 221334443 35666778899984
No 108
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.48 E-value=1.6e+02 Score=25.77 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhc-cCCchhHHHHHHHHHhHHHh
Q 016049 120 LREERNAVANKMKG-KLEPSERQKLIEEGKNLKEG 153 (396)
Q Consensus 120 lr~~rn~lsk~i~~-~~~~~~~~~l~~~~~~lk~~ 153 (396)
+.+.+.++.+.+.. +-+.+.+.++.+++.+++.+
T Consensus 94 l~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~q 128 (175)
T 3lay_A 94 LISKRYEYNALLTASSPDTAKINAVAKEMESLGQK 128 (175)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 33444444444432 22333344455444444443
No 109
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=44.46 E-value=1.9e+02 Score=28.31 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 016049 98 ANLELVLELYEKMLNVQKEVDRLREERNAVANK--MKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 98 ~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~--i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~ 172 (396)
.|.+...++-+++..+...++..+.-++.+..- ...... |. ++ ...++++++.+++++.+++.++..++
T Consensus 26 ~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~--D~-e~---~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 26 KDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD--DP-EL---KEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--CH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CH-HH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555555544444433333211 111111 11 12 23455677788888888887777554
No 110
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.79 E-value=1.1e+02 Score=23.71 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=21.8
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
+.|..+...+..+|+.+++++..++.++.++
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777766654
No 111
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=43.45 E-value=66 Score=27.57 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhhccCCchhH-HHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLRE-ERNAVANKMKGKLEPSER-QKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 109 ~~r~~~~~~~~lr~-~rn~lsk~i~~~~~~~~~-~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
=+..++.+++.|+. +|-++.+.++......|. +. .+-..-|++...++..+..+++.|..
T Consensus 10 g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsEN--aeY~aak~~q~~~e~ri~~Le~~L~~ 71 (158)
T 1grj_A 10 GAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKEN--AEYHAAREQQGFCEGRIKDIEAKLSN 71 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGC--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHhhHHHHHhccccccc--chhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 35678889999998 888888887642221110 00 01122334445555566666665554
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.42 E-value=50 Score=23.93 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=10.9
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
|..+...|..+-..|..++..+.+++
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 113
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.42 E-value=59 Score=23.30 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
.|..+...+..+-..|..++..+.+++.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 114
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.82 E-value=40 Score=22.87 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=17.2
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+|++++..+..+|...++++.+++.++.+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555543
No 115
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.96 E-value=66 Score=32.08 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
++..+..+++.++.+..++.+++ +++.++.+.+++++.+.+.....+.+++.++
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~---------~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCN---------EQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666554 2345566666777777677777777777665
No 116
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=41.79 E-value=1.7e+02 Score=25.22 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhhhccCC-----chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 016049 116 EVDRLREERNAVANKMKGKLE-----PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 116 ~~~~lr~~rn~lsk~i~~~~~-----~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~ 172 (396)
.+..|+++...+..+|+.... ....+.+..+...|.-++..+|..+..++++-..++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544433111 112345666666677777777777777766554443
No 117
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.77 E-value=1.5e+02 Score=29.44 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 139 ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 139 ~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
+.+.+.++...++.++.++...+.+..+.+.+...
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 443 KETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 34556666666667777777666666666665543
No 118
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=41.14 E-value=33 Score=32.50 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=38.6
Q ss_pred CCCCceEEEeccccccCcCCCCCCCCCcceeeeEEEeeEEEeCCccchHHHHHHHHHHHHHHHHHcCCc
Q 016049 318 SLLPLKYAAFSHCFRTEAGAAGTATRGLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLH 386 (396)
Q Consensus 318 ~~LPlK~~~~~~cFR~Eag~~G~~t~GL~RvhQF~kvE~f~f~~pe~S~~~~ee~l~~~e~il~~LgLp 386 (396)
..-|.+.+++-+|.|.-.|-+|..-.-|.+.+||.- ..=-.|++.. +++-+-++.|||.
T Consensus 56 Gpepw~~AYVqPsRRP~DGRYGeNPNRLq~y~QfQV---ilKPsP~niQ-------eLYL~SL~alGid 114 (298)
T 1j5w_A 56 RKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQV---IIKPSPENSQ-------ELYLESLEYLGIN 114 (298)
T ss_dssp CSSCEEEEEEEEEECCC-----CCTTCCSEEEEEEE---EEESCCSSHH-------HHHHHHHHHTTCC
T ss_pred CCCcceeeeeccCCCCCCCCcCCCchhhhhheeeEE---EECCCCccHH-------HHHHHHHHHhCCC
Confidence 445999999999999999999987777777777762 2223345444 5566677889884
No 119
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.93 E-value=1.5e+02 Score=29.94 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=10.8
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 145 EEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 145 ~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
++..+++.++.+.++.+.++.++...
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~ 569 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSL 569 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33334444444444444444444433
No 120
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.75 E-value=1.2e+02 Score=23.35 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 016049 109 KMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
.+.++......|.+++|.+..+
T Consensus 36 ~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 36 IKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 121
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.31 E-value=69 Score=31.78 Aligned_cols=51 Identities=25% Similarity=0.274 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 112 NVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 112 ~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
++..+++.|+.+.+++.++| +++..+.+++++++.+-+.....+.+++.++
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKI---------KDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455555555555555544 3345566667777777777777777777765
No 122
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=39.39 E-value=1.3e+02 Score=23.10 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 107 YEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 107 ~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
-+..-..+.+++.|+.-.+.+.+- .+.|..-+..|+.+-..+++.+..+.++..+
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G---------~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKG---------HQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666431 1233334455555556666655555554444
No 123
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=39.24 E-value=1.4e+02 Score=23.50 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHH
Q 016049 100 LELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLT 165 (396)
Q Consensus 100 ~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~ 165 (396)
.|.+-.+-.+.+.......++..+...+.++|.... .+.+....+.......+...++.....+
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE--~eld~~~e~l~~a~~kLe~~ek~~~~AE 85 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTE--DEVEKYSESVKEAQEKLEQAEKKATDAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555556666666666666666666654321 1223333344444444444444333333
No 124
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.08 E-value=1.4e+02 Score=23.57 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHH
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLT 165 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~ 165 (396)
|.+-.+-.+.+.......++..+...+.+++... ..+.+.+..+....+..+.+.++.....+
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l--E~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT--EDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555555555321 12233333444444444444444444333
No 125
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=38.26 E-value=3e+02 Score=27.01 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=31.0
Q ss_pred ccchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016049 74 AIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAV 127 (396)
Q Consensus 74 mlD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~l 127 (396)
.||+..+.+..+.+.+.+..-+.-.|.+...++-+++..+...++.++.-++.+
T Consensus 24 ~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~ 77 (365)
T 1gqe_A 24 YLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGL 77 (365)
T ss_dssp HTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777776666666666654443455666666666655555555554444333
No 126
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.67 E-value=1.7e+02 Score=24.04 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 016049 109 KMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
.+..+......|..++|.+..++
T Consensus 35 ~r~ele~~~~~l~~Ek~~L~~qL 57 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDLQLQV 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555444
No 127
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.40 E-value=46 Score=23.98 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
.|..++..|..+-..|..++..+.+++
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555445555554444443
No 128
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=36.97 E-value=1.1e+02 Score=25.91 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCC------chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 110 MLNVQKEVDRLREERNAVANKMKGKLE------PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 110 ~r~~~~~~~~lr~~rn~lsk~i~~~~~------~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+..++.+++..+.+|.++.+.|+...+ ..+..+.+ ++...++..+..+++.|..
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak-------~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAK-------QEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 456777788877788888887754221 22223333 4444555566666665554
No 129
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.56 E-value=1e+02 Score=34.65 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=7.5
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 016049 152 EGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 152 ~~l~~le~~~~~l~~~l~ 169 (396)
+.++.|+++...+++++.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 130
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.73 E-value=36 Score=24.84 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=10.3
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDE 167 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~ 167 (396)
|..+..+|+.+-.+|+.++..++.+
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 131
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=35.39 E-value=65 Score=22.98 Aligned_cols=20 Identities=10% Similarity=0.333 Sum_probs=8.5
Q ss_pred cCHHHHHHHHHccCCcccHH
Q 016049 82 DNKEAVSANIRNRNSNANLE 101 (396)
Q Consensus 82 ~n~e~v~~~l~~R~~~~~~d 101 (396)
+...++.+.++.=+....++
T Consensus 9 ekvkaleekvkalggggrie 28 (67)
T 1lq7_A 9 EKVKALEEKVKALGGGGRIE 28 (67)
T ss_dssp HHHHHHHHHHHHSCCSSSHH
T ss_pred HHHHHHHHHHHHhcCCccHH
Confidence 33344444444444433333
No 132
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=34.95 E-value=38 Score=33.47 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=14.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHH
Q 016049 149 NLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 149 ~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.++++++++++++.+++.++..
T Consensus 91 ~a~~e~~~l~~~l~~le~~l~~ 112 (371)
T 1zbt_A 91 MAKEELKNSKVAKEEYEEKLRF 112 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777776664
No 133
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.93 E-value=65 Score=33.28 Aligned_cols=10 Identities=0% Similarity=-0.184 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 016049 101 ELVLELYEKM 110 (396)
Q Consensus 101 d~v~~l~~~~ 110 (396)
++|...++++
T Consensus 67 NELKnqLEdl 76 (562)
T 3ghg_A 67 NKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 134
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=34.34 E-value=2.1e+02 Score=24.97 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=5.1
Q ss_pred HhHHHhHHHHHHH
Q 016049 148 KNLKEGLVTLEED 160 (396)
Q Consensus 148 ~~lk~~l~~le~~ 160 (396)
+.|-+.|..+|++
T Consensus 121 r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 121 KEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444433
No 135
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.69 E-value=1.4e+02 Score=29.39 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=14.9
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 145 EEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 145 ~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
.+++++..+|++++.++..++.++.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665555544
No 136
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=33.17 E-value=1.5e+02 Score=23.16 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh----ccC-CchhHHHHHHHHHhHHHhHHH-HHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAVANKMK----GKL-EPSERQKLIEEGKNLKEGLVT-LEEDLVKLTD 166 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~----~~~-~~~~~~~l~~~~~~lk~~l~~-le~~~~~l~~ 166 (396)
+++....+++.-..+-+.+-.+|- ... .+..+..+..+++.-|.++.. ++.++..+.+
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444555544444444444442 221 334466777777888887777 7777766643
No 137
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.61 E-value=74 Score=25.30 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=30.0
Q ss_pred chHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016049 76 DFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVAN 129 (396)
Q Consensus 76 D~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk 129 (396)
.++-+..+.....+.+..+. .++|++.+.+.+.+.....+.-|+++-.-...
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq--~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~ 54 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQ--ELIDKLKEEAEQHKIVMETVPVLKAQADIYKA 54 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666543 34566666666666555556556555444433
No 138
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=32.56 E-value=73 Score=24.29 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc----CCCCCC
Q 016049 139 ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC----IPNMTH 180 (396)
Q Consensus 139 ~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~----lPN~~h 180 (396)
.+++|++.+-+.+.+|+..+..+.++|+=++.++++ -|+++.
T Consensus 15 treELi~l~lk~~~~l~~k~~~v~eLEdYID~LLvRVME~~P~iLq 60 (75)
T 3tso_C 15 TYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPSILR 60 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhh
Confidence 356788888888888888888888888888777655 466653
No 139
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=32.56 E-value=1.5e+02 Score=21.93 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=37.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Q 016049 98 ANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG---KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEA 172 (396)
Q Consensus 98 ~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~---~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~ 172 (396)
+++++|...-.+.+....+++.. .+.|...+.. .=.|...+...+.-.+.+..+..+...+.++...|...+
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~---l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A 83 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQ---INRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIA 83 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655555444333332 3333333322 223444555666566666666666666666666666554
No 140
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=32.20 E-value=72 Score=19.00 Aligned_cols=8 Identities=25% Similarity=0.165 Sum_probs=2.9
Q ss_pred HHhHHHhH
Q 016049 147 GKNLKEGL 154 (396)
Q Consensus 147 ~~~lk~~l 154 (396)
..+||.++
T Consensus 9 vgelkgev 16 (27)
T 3v86_A 9 VGELKGEV 16 (27)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHH
Confidence 33333333
No 141
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=32.16 E-value=86 Score=35.41 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=7.0
Q ss_pred HHhHHHhHHHHHHHHHHH
Q 016049 147 GKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l 164 (396)
..++.+++++++.++.++
T Consensus 922 ~~~Le~~l~ele~elee~ 939 (1184)
T 1i84_S 922 KQELEEILHEMEARIEEE 939 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444333333
No 142
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.38 E-value=1.9e+02 Score=22.70 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHHccCCcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 87 VSANIRNRNSNA-----NLELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 87 v~~~l~~R~~~~-----~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
.+..+++|++.. -+++...|..+...++.+++.|+.+...+.+++
T Consensus 29 ~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666543 267888888888888888888888887777654
No 143
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.92 E-value=1.5e+02 Score=23.38 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh---ccCCchhHHHHHHHHHhHHHhHHHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAVANKMK---GKLEPSERQKLIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~---~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l 164 (396)
+++....+++..-.+-+.+-.+|- ....+..+..+..+++.-|.++..++.++..+
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444432 11234456778888888888877777666654
No 144
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=30.68 E-value=1.4e+02 Score=23.23 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 016049 150 LKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 150 lk~~l~~le~~~~~l~~~l~~ 170 (396)
+..+++.....+..+.+++.+
T Consensus 61 V~~eL~~sn~kl~~L~~eL~e 81 (86)
T 1cxz_B 61 VELLLRGSSRRLDLLHQQLQE 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555544
No 145
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.28 E-value=1.2e+02 Score=23.20 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=8.1
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
|+.+...+..-...++..+.++++++
T Consensus 49 l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 49 LQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 146
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=30.17 E-value=1.8e+02 Score=22.19 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=51.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---c--CCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 97 NANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG---K--LEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 97 ~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~---~--~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
..|++.|..+-++.+.+..++..-+...+.+.+.-.. . ..+++...+..++..|+..-..|......-...|...
T Consensus 32 ~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~a 111 (118)
T 3uul_A 32 SDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDA 111 (118)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999988888887777654221 1 1234455666677777777777766666666665554
Q ss_pred H
Q 016049 172 A 172 (396)
Q Consensus 172 ~ 172 (396)
+
T Consensus 112 L 112 (118)
T 3uul_A 112 L 112 (118)
T ss_dssp H
T ss_pred H
Confidence 4
No 147
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=30.10 E-value=2.3e+02 Score=23.32 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=45.1
Q ss_pred HhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCc--hhHHHHHHHHHhHHHhHHHH
Q 016049 80 IRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEP--SERQKLIEEGKNLKEGLVTL 157 (396)
Q Consensus 80 ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~--~~~~~l~~~~~~lk~~l~~l 157 (396)
++.|.+.++..++.-..=-|+..++ -.+....+.-+.+..++-+...+.+....+. .+...-..++++|+.+|+.|
T Consensus 6 vkANSeAC~dGLrAq~ECrN~T~lL--q~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~L 83 (121)
T 3mq7_A 6 DKANSEAARDGLRAVMEARNVTHLL--QQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTL 83 (121)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677776663211001222222 2244444444444444444444443321110 11112245688899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 016049 158 EEDLVKLTDELQQEAQ 173 (396)
Q Consensus 158 e~~~~~l~~~l~~~~~ 173 (396)
+.++.+...++.++-.
T Consensus 84 nq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 84 NHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9998888888877643
No 148
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=29.27 E-value=1.5e+02 Score=22.49 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhh
Q 016049 118 DRLREERNAVANK 130 (396)
Q Consensus 118 ~~lr~~rn~lsk~ 130 (396)
+.+++.+..+...
T Consensus 4 ~~l~~~~~sLE~~ 16 (84)
T 1gk4_A 4 DALKGTNESLERQ 16 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 149
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=29.25 E-value=84 Score=23.72 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=22.0
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHcCCC
Q 016049 147 GKNLKEGLVTLEEDLVKLTDELQQEAQCIPN 177 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN 177 (396)
.++||.+|+.|.....+..-+|.++.-.||+
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~ 35 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPT 35 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence 4556677777777777888888887765553
No 150
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=28.89 E-value=20 Score=28.67 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 016049 107 YEKMLNVQKEVDRLREERNAVANK 130 (396)
Q Consensus 107 ~~~~r~~~~~~~~lr~~rn~lsk~ 130 (396)
..+.++++.|+-+|+.|.|.+|.+
T Consensus 29 ~~~~~~lk~E~~~lk~E~~stSaQ 52 (94)
T 3vlc_E 29 SKKYLAKVKERHELKEFNNSISAQ 52 (94)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHhccchH
Confidence 456788888888888888888754
No 151
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.89 E-value=1.5e+02 Score=20.85 Aligned_cols=21 Identities=5% Similarity=0.139 Sum_probs=8.2
Q ss_pred HhHHHhHHHHHHHHHHHHHHH
Q 016049 148 KNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 148 ~~lk~~l~~le~~~~~l~~~l 168 (396)
..++.+++...++.....+.|
T Consensus 28 ~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 28 NAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333334443334444433333
No 152
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.38 E-value=2.1e+02 Score=22.36 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 140 RQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 140 ~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
.+.|..+...+..+++.+++++..++.++.++-..
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888889999999999999999888766443
No 153
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=28.30 E-value=2.3e+02 Score=22.77 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
|.+.++.+++|+....-.+|-.+++.+.=+|
T Consensus 2 dsL~EvEEKyrKAMVsnAQLDNEKsal~YqV 32 (103)
T 4h22_A 2 DSLAEVEEKYKKAMVSNAQLDNEKTNFMYQV 32 (103)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3455566677777777777777776666544
No 154
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=27.87 E-value=2.5e+02 Score=22.95 Aligned_cols=24 Identities=17% Similarity=-0.096 Sum_probs=10.6
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
-..++..|...+..-|..+..+..
T Consensus 43 ~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 43 SSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 155
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=27.80 E-value=43 Score=23.94 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=5.6
Q ss_pred cCCcc-cHHHHHH
Q 016049 94 RNSNA-NLELVLE 105 (396)
Q Consensus 94 R~~~~-~~d~v~~ 105 (396)
||++. .||.+++
T Consensus 18 rGY~~~EVD~FLd 30 (57)
T 2wuj_A 18 RGYDEDEVNEFLA 30 (57)
T ss_dssp TEEEHHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 55553 3554443
No 156
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.58 E-value=2.3e+02 Score=22.37 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc---cCCchhHHHHHHHHHhHHHhHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAVANKMKG---KLEPSERQKLIEEGKNLKEGLVTLEED 160 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~~---~~~~~~~~~l~~~~~~lk~~l~~le~~ 160 (396)
++++...+++..-.|-+++-.+|-- ...+..+..+..++++-|.++..++.+
T Consensus 46 ~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 46 EKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444444444311 112334455556666666665555443
No 157
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=26.92 E-value=2.6e+02 Score=22.90 Aligned_cols=34 Identities=12% Similarity=0.223 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016049 99 NLELVLELYEKMLNVQKEVDRLREERNAVANKMK 132 (396)
Q Consensus 99 ~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~ 132 (396)
|++.+..+-++...+..+++.+..+|.++-..++
T Consensus 37 d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg 70 (157)
T 2fup_A 37 ELPVLQQLLGAKQPLMQQLERNGRARAEILREAG 70 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4667888888888888889999988888876653
No 158
>1lki_A Leukemia inhibitory factor; cytokine, four helix bundle; 2.00A {Mus musculus} SCOP: a.26.1.1 PDB: 1a7m_A 2q7n_B* 1pvh_B 1emr_A
Probab=26.81 E-value=3.3e+02 Score=23.99 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNMTH 180 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~~h 180 (396)
++++++|.-...+-.-+...-..++.+.= -+..|-.+|.+.-.....+-..+.-.+..--++.|
T Consensus 78 eRllely~~~~~l~~~L~nVt~dQ~~LnP----------------~a~~Ll~~L~~t~~~~rgLlsnv~c~lc~~y~v~~ 141 (180)
T 1lki_A 78 TKLVELYRMVAYLSASLTNITRDQKVLNP----------------TAVSLQVKLNATIDVMRGLLSNVLCRLCNKYRVGH 141 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT----------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 34777777666655444444333333321 12334445555556666777777777878889999
Q ss_pred CCCCCCCC
Q 016049 181 PDVPVGGE 188 (396)
Q Consensus 181 ~~vP~g~e 188 (396)
++||.|.+
T Consensus 142 v~v~~gP~ 149 (180)
T 1lki_A 142 VDVPPVPD 149 (180)
T ss_dssp ECCCCCCC
T ss_pred CCCCCCCC
Confidence 99999865
No 159
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.74 E-value=2.3e+02 Score=22.27 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
+...++.+.+....+-..+..+++.... ...++-.++..|...+..++.++..+++.+.
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~--~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEE--RSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443332110 1122333444444455555554444444443
No 160
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=26.58 E-value=2e+02 Score=21.51 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 99 NLELVLELYEKM----LNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 99 ~~d~v~~l~~~~----r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+.++|...-.+. .++...+..|+...+.+...-.+. ..+.....-.+.+..+..+...+..+...|..
T Consensus 9 ~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~----a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGS----TFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333 445555555665555555443332 22333334444444555555555555444443
No 161
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.53 E-value=3.1e+02 Score=23.59 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 016049 104 LELYEKMLNVQKEV 117 (396)
Q Consensus 104 ~~l~~~~r~~~~~~ 117 (396)
-.|++....+..++
T Consensus 16 s~LeD~L~~~R~el 29 (154)
T 2ocy_A 16 SHLEEQLNKSLKTI 29 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33444433333333
No 162
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=26.32 E-value=2.2e+02 Score=21.71 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=52.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----cCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 97 NANLELVLELYEKMLNVQKEVDRLREERNAVANKMKG-----KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 97 ~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~-----~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
..|++.|..+-++...+..++..-+...+.+.+.-.. ...+++...+..+...|++.-..|......-...|...
T Consensus 32 ~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~a 111 (119)
T 3uun_A 32 SNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRV 111 (119)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999888888777777653221 12334455677777777777777776666666666655
Q ss_pred HH
Q 016049 172 AQ 173 (396)
Q Consensus 172 ~~ 173 (396)
+.
T Consensus 112 L~ 113 (119)
T 3uun_A 112 LM 113 (119)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 163
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=26.19 E-value=68 Score=24.83 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=24.1
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCC
Q 016049 146 EGKNLKEGLVTLEEDLVKLTDELQQEAQCIPN 177 (396)
Q Consensus 146 ~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN 177 (396)
+.++||.+|+.|.....+..-+|+++.-.||+
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEdLP~ 47 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEGLPT 47 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 46677888888888888888888888776664
No 164
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.00 E-value=2.1e+02 Score=27.97 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l 164 (396)
+...+.+++.++++..++.+.++
T Consensus 278 k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 278 KAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666655554
No 165
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.95 E-value=1.5e+02 Score=20.96 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 016049 112 NVQKEVDRLR 121 (396)
Q Consensus 112 ~~~~~~~~lr 121 (396)
+|-.++++|.
T Consensus 15 ~L~~kVdqLs 24 (52)
T 1jcd_A 15 TANAKADQAS 24 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 166
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.89 E-value=1.1e+02 Score=20.40 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 147 GKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
...+..+++.+|+.+..+..+++.
T Consensus 22 laaleselqalekklaalksklqa 45 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777766666654
No 167
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=25.66 E-value=3.2e+02 Score=23.43 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=12.5
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
+..+...++.++..++..+..+..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (284)
T 1c1g_A 81 AEADVASLNRRIQLFEEELDRAQERLAT 108 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 168
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=25.15 E-value=2.1e+02 Score=21.20 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 98 ANLELVLELYEKMLN----VQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 98 ~~~d~v~~l~~~~r~----~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
++++.|...-.+... +...++.|+...+.+...- .+...+...+.-.+.+..+..+...+..+...|..
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W----~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIW----EGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHN 81 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554444433 4444444444444443322 23333334444444455555555555555544443
No 169
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.63 E-value=2.7e+02 Score=27.66 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=10.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 016049 150 LKEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 150 lk~~l~~le~~~~~l~~~l~~~~~ 173 (396)
|...+..++.++..+++++.++..
T Consensus 110 l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 110 LTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443
No 170
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.38 E-value=2.5e+02 Score=22.30 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 016049 153 GLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 153 ~l~~le~~~~~l~~~l~~ 170 (396)
+-..++....++.++|.+
T Consensus 77 e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 77 EKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334445555555555543
No 171
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.07 E-value=77 Score=19.01 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=12.5
Q ss_pred HHHHHHhHHHhHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l 164 (396)
|++.-..||++|..||-++..+
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 3444455666666666555544
No 172
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=23.71 E-value=1.4e+02 Score=27.33 Aligned_cols=50 Identities=16% Similarity=0.336 Sum_probs=35.8
Q ss_pred ccchHHHhcCHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 74 AIDFKWIRDNKEAVSANIRNRNSNANLELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 74 mlD~~~ir~n~e~v~~~l~~R~~~~~~d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
.|.+++...+-+.+++.+..| +-.+-++...+..+++++++|+|...+++
T Consensus 152 hLSL~f~~asde~Ik~yLa~R--------~~~lK~kl~~l~~~L~~~~~e~~s~~~~~ 201 (228)
T 3q0x_A 152 HITLAFRPGNDSVVKQFLAFR--------LSEVKGTCHDLSDDLSRTRDDRDSMVAQL 201 (228)
T ss_dssp EEEEEEEECCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677889999988877 23334456667778888888888777765
No 173
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.13 E-value=2.7e+02 Score=22.97 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhc---cCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCC
Q 016049 113 VQKEVDRLREERNAVANKMKG---KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIP 176 (396)
Q Consensus 113 ~~~~~~~lr~~rn~lsk~i~~---~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lP 176 (396)
++.|+.+|..+...+..+... ..+.+-..++..+...|..+|..+......--+.--..+..+|
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~lp 74 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMP 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
No 174
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.84 E-value=2.8e+02 Score=22.19 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKM 131 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i 131 (396)
+.+-.+-++..++..+-+.|+.+++.+.-++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666665554
No 175
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=22.53 E-value=2.6e+02 Score=22.24 Aligned_cols=8 Identities=13% Similarity=0.107 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 016049 159 EDLVKLTD 166 (396)
Q Consensus 159 ~~~~~l~~ 166 (396)
..+.+|+.
T Consensus 75 ~k~~eL~~ 82 (120)
T 2p32_A 75 HQQKDLEG 82 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 176
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.48 E-value=3e+02 Score=27.08 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=11.4
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
.+..++.++..++.+..+.+..+-.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 453 RLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHhcccHHHHHHH
Confidence 3444444444444444444444433
No 177
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.35 E-value=1.2e+02 Score=23.57 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCC
Q 016049 141 QKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPN 177 (396)
Q Consensus 141 ~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN 177 (396)
+.|..+=..|+.+|..|+.++..+ ..++.++|.
T Consensus 46 ~~Le~EN~~Lr~~v~~L~~E~~~L----r~ll~~~p~ 78 (87)
T 1hjb_A 46 LELTAENERLQKKVEQLSRELSTL----RNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCcH
Confidence 344455555555555555555443 345666665
No 178
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.27 E-value=1.5e+02 Score=24.94 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=13.6
Q ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 143 LIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 143 l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
+.+.+..|.++++++++++.++..++
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555444
No 179
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.66 E-value=2.9e+02 Score=21.57 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHH
Q 016049 109 KMLNVQKEVDRLREERNAVANKMKGKLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQ 169 (396)
Q Consensus 109 ~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~ 169 (396)
++..++.+.++...+-..+..+++.... ...++-.++..|+..++.++.++..+++.+.
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~--~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAED--RCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444444444332111 1122333444444444444444444444443
No 180
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.49 E-value=4.1e+02 Score=23.16 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCch--hHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHc
Q 016049 101 ELVLELYEKMLNVQKEVDRLREERNAVANKMKGKLEPS--ERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQC 174 (396)
Q Consensus 101 d~v~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~--~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~ 174 (396)
++--++.+-+.+...+...|+.+......++......+ |.+ +++++-+++.++..++.....++...+..
T Consensus 71 EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~Dea----kI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 71 EQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTA----KINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555556667777666666665544333 333 35555566666666665555555555544
No 181
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.33 E-value=5e+02 Score=24.17 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHcCCCC
Q 016049 137 PSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQEAQCIPNM 178 (396)
Q Consensus 137 ~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~~~~lPN~ 178 (396)
..+.+....+....+.++..++.++..++.++...-..+-+.
T Consensus 114 ~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~ 155 (369)
T 4dk0_A 114 LDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYT 155 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345566666777777788888888888877777766666543
No 182
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.25 E-value=1.7e+02 Score=19.81 Aligned_cols=27 Identities=33% Similarity=0.342 Sum_probs=16.5
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~~l 168 (396)
+|-++.+++.....+||+.+..++.+-
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345556666666666666666665553
No 183
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=20.86 E-value=3.4e+02 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016049 108 EKMLNVQKEVDRLREERNAVA 128 (396)
Q Consensus 108 ~~~r~~~~~~~~lr~~rn~ls 128 (396)
..+..+++++++|+.+.+...
T Consensus 11 ~lRadl~kri~qL~~ri~~n~ 31 (154)
T 3kdq_A 11 AQRVEAQRRYSELNQLLLDVA 31 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 345566666777776666664
No 184
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=20.81 E-value=2.7e+02 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 016049 151 KEGLVTLEEDLVKLTDELQQEAQ 173 (396)
Q Consensus 151 k~~l~~le~~~~~l~~~l~~~~~ 173 (396)
++++..+++++.+++.++..+++
T Consensus 59 ~~e~~~l~~~l~~le~~l~~lL~ 81 (342)
T 1rq0_A 59 ELEIEKYEKELDQLYQELLFLLS 81 (342)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 56777888888888888876663
No 185
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.78 E-value=4e+02 Score=22.88 Aligned_cols=68 Identities=12% Similarity=0.240 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCchhH------HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 104 LELYEKMLNVQKEVDRLREERNAVANKMKGKLEPSER------QKLIEEGKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 104 ~~l~~~~r~~~~~~~~lr~~rn~lsk~i~~~~~~~~~------~~l~~~~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
..|...-|++..++..|..+.+++..+|+......+. ..-.-+.+.-..++......+..+...++..
T Consensus 17 ~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~ 90 (179)
T 2gd5_A 17 LKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQ 90 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666542111111 1111223333445555555666666555544
No 186
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.78 E-value=2.9e+02 Score=23.11 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=26.4
Q ss_pred HHHHHhhhhccCC--chhHHHHHHHHHhHHHhHHHHHHHHHHH
Q 016049 124 RNAVANKMKGKLE--PSERQKLIEEGKNLKEGLVTLEEDLVKL 164 (396)
Q Consensus 124 rn~lsk~i~~~~~--~~~~~~l~~~~~~lk~~l~~le~~~~~l 164 (396)
.++++..++.... .+..+.|.++.++++.+++++..++...
T Consensus 16 l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 16 LREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443211 2345778888889999888888876665
No 187
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.56 E-value=1.3e+02 Score=21.90 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHHHH
Q 016049 142 KLIEEGKNLKEGLVTLEEDLVKLTD 166 (396)
Q Consensus 142 ~l~~~~~~lk~~l~~le~~~~~l~~ 166 (396)
.|-.++..|+.+-..|+.++..+.+
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444445444444443
No 188
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.32 E-value=2.9e+02 Score=21.79 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc------cCCchhHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHH
Q 016049 106 LYEKMLNVQKEVDRLREERNAVANKMKG------KLEPSERQKLIEEGKNLKEGLVTLEEDLVKLTDELQQ 170 (396)
Q Consensus 106 l~~~~r~~~~~~~~lr~~rn~lsk~i~~------~~~~~~~~~l~~~~~~lk~~l~~le~~~~~l~~~l~~ 170 (396)
|-.+...+++++++....|..+.|-+.. ..++... ..++.+....|..|..++..++.-|.+
T Consensus 20 L~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~---~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 20 LQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL---EPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555543321 1122222 233444444555555555554444433
No 189
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.12 E-value=4.1e+02 Score=26.84 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=12.7
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHHH
Q 016049 147 GKNLKEGLVTLEEDLVKLTDELQQE 171 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l~~~ 171 (396)
++.|+..+..+..++..++..+...
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555443
No 190
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.09 E-value=2.3e+02 Score=21.47 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=8.9
Q ss_pred HHhHHHhHHHHHHHHHHHHHHH
Q 016049 147 GKNLKEGLVTLEEDLVKLTDEL 168 (396)
Q Consensus 147 ~~~lk~~l~~le~~~~~l~~~l 168 (396)
+..|..+=..|..++..+..++
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444443
Done!