BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016050
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OQ4|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|B Chain B, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|C Chain C, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|D Chain D, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|E Chain E, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ4|F Chain F, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Azide.
pdb|1OQ7|A Chain A, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|B Chain B, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|C Chain C, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|D Chain D, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|E Chain E, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ7|F Chain F, The Crystal Structure Of The Iron Free (apo-)form Of
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (castor Bean).
pdb|1OQ9|A Chain A, The Crystal Structure Of The Complex Between Stearoyl Acyl
Carrier Protein Desaturase From Ricinus Communis (Castor
Bean) And Acetate.
pdb|1OQB|A Chain A, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|B Chain B, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|C Chain C, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|D Chain D, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|E Chain E, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|1OQB|F Chain F, The Crystal Structure Of The One-iron Form Of The Di-iron
Center In Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (castor Bean).
pdb|2XZ0|A Chain A, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|B Chain B, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ0|C Chain C, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|A Chain A, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein.
pdb|2XZ1|B Chain B, The Structure Of The 2:2 (Fully Occupied) Complex Between
Stearoyl Acyl Carrier Protein Desaturase From Ricinus
Communis (Castor Bean) And Acyl Carrier Protein
Length = 363
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/363 (92%), Positives = 354/363 (97%)
Query: 34 ASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEK 93
ASTL+S +KEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKS+++WAE NILVHLKPVEK
Sbjct: 1 ASTLKSGSKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEK 60
Query: 94 CWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDG 153
CWQPQDFLPDPASDGFDEQV+ELRERAKE+PDDYFVVLVGDMITEEALPTYQTMLNTLDG
Sbjct: 61 CWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDG 120
Query: 154 VRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPR 213
VRDETGAS TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPR
Sbjct: 121 VRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPR 180
Query: 214 TENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIV 273
TENSPYLGFIYTSFQERATFISHGNTAR AKEHGD+KLAQICGTIA+DEKRHETAYTKIV
Sbjct: 181 TENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIV 240
Query: 274 EKLFEIDPDGTIVSFADMMRKKISMPAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADI 333
EKLFEIDPDGT+++FADMMRKKISMPAHLMYDGRDDNLF+HFSAVAQRLGVYTAKDYADI
Sbjct: 241 EKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADI 300
Query: 334 LEFLVGRWKVEKLTGLSGEAQKAQDYVCGLPARIRRLEERAQGRAKQGPTIPFSWIYDRQ 393
LEFLVGRWKV+KLTGLS E QKAQDYVC LP RIRRLEERAQGRAK+ PT+PFSWI+DRQ
Sbjct: 301 LEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQ 360
Query: 394 VQL 396
V+L
Sbjct: 361 VKL 363
>pdb|2J2F|A Chain A, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|B Chain B, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|C Chain C, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|D Chain D, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|E Chain E, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
pdb|2J2F|F Chain F, The T199d Mutant Of Stearoyl Acyl Carrier Protein
Desaturase From Ricinus Communis (Castor Bean)
Length = 363
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/363 (92%), Positives = 353/363 (97%)
Query: 34 ASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEK 93
ASTL+S +KEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKS+++WAE NILVHLKPVEK
Sbjct: 1 ASTLKSGSKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEK 60
Query: 94 CWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDG 153
CWQPQDFLPDPASDGFDEQV+ELRERAKE+PDDYFVVLVGDMITEEALPTYQTMLNTLDG
Sbjct: 61 CWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDG 120
Query: 154 VRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPR 213
VRDETGAS TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPR
Sbjct: 121 VRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPR 180
Query: 214 TENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIV 273
TENSPYLGFIYTSFQERA FISHGNTAR AKEHGD+KLAQICGTIA+DEKRHETAYTKIV
Sbjct: 181 TENSPYLGFIYTSFQERADFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIV 240
Query: 274 EKLFEIDPDGTIVSFADMMRKKISMPAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADI 333
EKLFEIDPDGT+++FADMMRKKISMPAHLMYDGRDDNLF+HFSAVAQRLGVYTAKDYADI
Sbjct: 241 EKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADI 300
Query: 334 LEFLVGRWKVEKLTGLSGEAQKAQDYVCGLPARIRRLEERAQGRAKQGPTIPFSWIYDRQ 393
LEFLVGRWKV+KLTGLS E QKAQDYVC LP RIRRLEERAQGRAK+ PT+PFSWI+DRQ
Sbjct: 301 LEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQ 360
Query: 394 VQL 396
V+L
Sbjct: 361 VKL 363
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|B Chain B, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|C Chain C, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|D Chain D, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|E Chain E, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|F Chain F, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
Length = 345
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/345 (93%), Positives = 337/345 (97%)
Query: 52 MPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDE 111
MPPREVHVQVTHSMPPQKIEIFKS+++WAE NILVHLKPVEKCWQPQDFLPDPASDGFDE
Sbjct: 1 MPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDE 60
Query: 112 QVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRA 171
QV+ELRERAKE+PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGAS TSWAIWTRA
Sbjct: 61 QVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRA 120
Query: 172 WTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERA 231
WTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERA
Sbjct: 121 WTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERA 180
Query: 232 TFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADM 291
TFISHGNTAR AKEHGD+KLAQICGTIA+DEKRHETAYTKIVEKLFEIDPDGT+++FADM
Sbjct: 181 TFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADM 240
Query: 292 MRKKISMPAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVEKLTGLSG 351
MRKKISMPAHLMYDGRDDNLF+HFSAVAQRLGVYTAKDYADILEFLVGRWKV+KLTGLS
Sbjct: 241 MRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSA 300
Query: 352 EAQKAQDYVCGLPARIRRLEERAQGRAKQGPTIPFSWIYDRQVQL 396
E QKAQDYVC LP RIRRLEERAQGRAK+ PT+PFSWI+DRQV+L
Sbjct: 301 EGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 345
>pdb|2UW1|A Chain A, Ivy Desaturase Structure
Length = 338
Score = 588 bits (1516), Expect = e-168, Method: Compositional matrix adjust.
Identities = 269/338 (79%), Positives = 309/338 (91%)
Query: 59 VQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRE 118
+QVTHSMPPQK+EIFKS++DWA NN+L+HLK VEK WQPQD+LPDP SDGF+EQV+ELRE
Sbjct: 1 MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRE 60
Query: 119 RAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENR 178
RAKE+PDDYFVVLVGDMITEEALPTY +MLN DG++DETGA ++WA+WTRAWTAEENR
Sbjct: 61 RAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENR 120
Query: 179 HGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGN 238
HGDLLNKYLYLSGRVDMR+IEKTIQYLIGSGMD ++ENSPYLGFIYTSFQERATFISH N
Sbjct: 121 HGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHAN 180
Query: 239 TARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKISM 298
TA+LA+ +GD KLA ICG+IASDEKRH TAYTKIVEKL EIDPD T+++FADMMRKKI+M
Sbjct: 181 TAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITM 240
Query: 299 PAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVEKLTGLSGEAQKAQD 358
PAHLMYDG D+ LF+HF+AVAQRLGVY+A DY DILEFLV +W VE+LTGLS E +KAQ+
Sbjct: 241 PAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQE 300
Query: 359 YVCGLPARIRRLEERAQGRAKQGPTIPFSWIYDRQVQL 396
YVC L +IRRLEERAQGRAK+ PT+PFSWI+DRQV+L
Sbjct: 301 YVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 338
>pdb|2UW1|B Chain B, Ivy Desaturase Structure
Length = 338
Score = 583 bits (1503), Expect = e-167, Method: Compositional matrix adjust.
Identities = 267/338 (78%), Positives = 307/338 (90%)
Query: 59 VQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRE 118
+QVTHSMPPQK+EIFKS++DWA NN+L+HLK VEK WQPQD+LPDP SDGF+EQV+ELRE
Sbjct: 1 MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRE 60
Query: 119 RAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENR 178
RAKE+PDDYFVVLVGDMITEEALPTY +MLN DG++DETGA ++WA+WTRAWTAEENR
Sbjct: 61 RAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENR 120
Query: 179 HGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGN 238
HGDLLNKYLYLSGRVDMR+IEKTIQYLIGSGMD ++ENSPYLGFIYTSFQERATFISH N
Sbjct: 121 HGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHAN 180
Query: 239 TARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKISM 298
TA+LA+ GD LA ICG+IASDEKRH TAYTKIVEKL EIDPD T+++FADMMRKKI+M
Sbjct: 181 TAKLAQHWGDKNLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITM 240
Query: 299 PAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVEKLTGLSGEAQKAQD 358
PAHLMYDG D+ LF+HF+AVAQR+GVY+A DY DILEFLV +W VE+LTGLS E +KAQ+
Sbjct: 241 PAHLMYDGSDELLFKHFTAVAQRVGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQE 300
Query: 359 YVCGLPARIRRLEERAQGRAKQGPTIPFSWIYDRQVQL 396
YVC L +IRRLEERAQGRAK+ PT+PFSWI+DRQV+L
Sbjct: 301 YVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 338
>pdb|1ZA0|A Chain A, X-Ray Structure Of Putative Acyl-Acp Desaturase Desa2 From
Mycobacterium Tuberculosis H37rv
Length = 275
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 165 WAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT-IQYLI-GSGMDPRTENSPYLGF 222
W W WTAEE+ H L +YL ++ VD E +Q+++ G + T+
Sbjct: 96 WGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRAEKYTQVET---L 152
Query: 223 IYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 282
+Y +F ER + N LA + + LA + IA DE RHE + +V + D
Sbjct: 153 VYMAFYERCGAVFCRN---LAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRD 209
Query: 283 GT 284
T
Sbjct: 210 ET 211
>pdb|3K55|A Chain A, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|B Chain B, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|C Chain C, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|D Chain D, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|E Chain E, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|F Chain F, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|G Chain G, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|H Chain H, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|I Chain I, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|J Chain J, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|K Chain K, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|L Chain L, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|M Chain M, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|N Chain N, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|O Chain O, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
pdb|3K55|P Chain P, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
Length = 306
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 111 EQVKELRE--RAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIW 168
EQ+KE+ + + K +P D V + GD+ + P ++ ML L+ V D A S
Sbjct: 189 EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLN-VNDVLYAGHNS---- 243
Query: 169 TRAWTAEENRHGDLLNKYLYLSGR 192
W + N + KY Y +G+
Sbjct: 244 --TWDPQSNS----IAKYNYPNGK 261
>pdb|3I41|A Chain A, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant
pdb|3I41|B Chain B, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant
pdb|3I46|A Chain A, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Calcium Ions
pdb|3I46|B Chain B, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Calcium Ions
pdb|3I48|A Chain A, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Magnesium Ions
pdb|3I48|B Chain B, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Magnesium Ions
Length = 317
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 111 EQVKELRE--RAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIW 168
EQ+KE+ + + K +P D V + GD+ + P ++ ML L+ V D A S
Sbjct: 189 EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLN-VNDVLYAGHNS---- 243
Query: 169 TRAWTAEENRHGDLLNKYLYLSGR 192
W + N + KY Y +G+
Sbjct: 244 --TWDPQSNS----IAKYNYPNGK 261
>pdb|3I5V|A Chain A, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
pdb|3I5V|B Chain B, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
pdb|3I5V|C Chain C, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
pdb|3I5V|D Chain D, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
Length = 313
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 111 EQVKELRE--RAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIW 168
EQ+KE+ + + K +P D V + GD+ + P ++ ML L+ V D A S
Sbjct: 189 EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLN-VNDVLYAGHNS---- 243
Query: 169 TRAWTAEENRHGDLLNKYLYLSGR 192
W + N + KY Y +G+
Sbjct: 244 --TWDPQSNS----IAKYNYPNGK 261
>pdb|2GEN|A Chain A, Structural Genomics, The Crystal Structure Of A Probable
Transcriptional Regulator From Pseudomonas Aeruginosa
Pao1
Length = 197
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 134 DMITEEALPTYQTM---LNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDL----LNKY 186
D I + AL + T++ +RD +GAS+ S + +E HG+L + +Y
Sbjct: 10 DEILQAALACFSEHGVDATTIEXIRDRSGASIGS---LYHHFGNKERIHGELYLAGIGQY 66
Query: 187 LYL--SGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTS 226
L +G R E+T++ L+ S +D N + FI S
Sbjct: 67 AALLEAGFARARSAEETVRLLVTSYIDWVVANPDWARFILHS 108
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution
Length = 646
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 145 QTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQ 197
Q +L + G+ ++T TS+ I + W +++ G + +Y ++G +D++Q
Sbjct: 383 QKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQ 435
>pdb|1VQQ|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1VQQ|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|4DKI|A Chain A, Structural Insights Into The Anti- Methicillin-Resistant
Staphylococcus Aureus (Mrsa) Activity Of Ceftobiprole
pdb|4DKI|B Chain B, Structural Insights Into The Anti- Methicillin-Resistant
Staphylococcus Aureus (Mrsa) Activity Of Ceftobiprole
Length = 646
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 145 QTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQ 197
Q +L + G+ ++T TS+ I + W +++ G + +Y ++G +D++Q
Sbjct: 383 QKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQ 435
>pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
Length = 294
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 32/139 (23%)
Query: 191 GRVDMRQIEKTIQYLIGSGMDP-----RTENSPYLGFIYTSFQERATFISHGNTARLAKE 245
G VD + I++ + +G D T SP L +F+E I + +
Sbjct: 16 GEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTL-----TFEEHEKVIEFA----VKRA 66
Query: 246 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKISMPAHLMYD 305
G +K+ G A+ E H TA+ K E+ DG +V +P +
Sbjct: 67 AGRIKVIAGTGGNATHEAVHLTAHAK------EVGADGALVV----------VPYYNKPT 110
Query: 306 GRDDNLFEHFSAVAQRLGV 324
R L+EHF VAQ + +
Sbjct: 111 QR--GLYEHFKTVAQEVDI 127
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
pdb|2W2H|B Chain B, Structural Basis Of Transcription Activation By The Cyclin
T1-Tat-Tar Rna Complex From Eiav
Length = 264
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 88 LKPVEKCWQPQDFLPDPASDGFDEQVKEL 116
+K C PQ+ LPD S+ + +QV++L
Sbjct: 102 IKVAHTCLHPQESLPDTRSEAYLQQVQDL 130
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|B Chain B, Structure Of Cdk9CYCLIN T F241L
Length = 259
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 88 LKPVEKCWQPQDFLPDPASDGFDEQVKEL 116
+K C PQ+ LPD S+ + +QV++L
Sbjct: 105 IKVAHTCLHPQESLPDTRSEAYLQQVQDL 133
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 88 LKPVEKCWQPQDFLPDPASDGFDEQVKEL 116
+K C PQ+ LPD S+ + +QV++L
Sbjct: 105 IKVAHTCLHPQESLPDTRSEAYLQQVQDL 133
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|B Chain B, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|B Chain B, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|4EC8|B Chain B, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|B Chain B, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
pdb|4BCF|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCH|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|B Chain B, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 260
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 88 LKPVEKCWQPQDFLPDPASDGFDEQVKEL 116
+K C PQ+ LPD S+ + +QV++L
Sbjct: 106 IKVAHTCLHPQESLPDTRSEAYLQQVQDL 134
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 88 LKPVEKCWQPQDFLPDPASDGFDEQVKEL 116
+K C PQ+ LPD S+ + +QV++L
Sbjct: 105 IKVAHTCLHPQESLPDTRSEAYLQQVQDL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,218,956
Number of Sequences: 62578
Number of extensions: 520819
Number of successful extensions: 1153
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 23
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)