Query 016050
Match_columns 396
No_of_seqs 204 out of 422
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:20:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00179 acyl- [acyl-carrier p 100.0 1E-137 3E-142 1027.1 34.4 353 44-396 36-390 (390)
2 PF03405 FA_desaturase_2: Fatt 100.0 4E-121 9E-126 903.0 22.0 329 66-394 1-330 (330)
3 cd01050 Acyl_ACP_Desat Acyl AC 100.0 9E-103 2E-107 765.0 29.1 297 68-374 1-297 (297)
4 cd00657 Ferritin_like Ferritin 98.9 4.1E-08 8.9E-13 78.8 11.7 126 131-272 3-129 (130)
5 PF11583 AurF: P-aminobenzoate 97.8 0.00028 6.1E-09 69.2 12.0 206 67-293 6-244 (304)
6 cd01049 RNRR2 Ribonucleotide R 97.3 0.0092 2E-07 58.0 15.0 178 92-293 20-225 (288)
7 cd01041 Rubrerythrin Rubreryth 97.2 0.0031 6.8E-08 54.9 9.8 99 162-275 32-132 (134)
8 cd01055 Nonheme_Ferritin nonhe 97.1 0.012 2.6E-07 52.0 12.6 109 162-280 34-143 (156)
9 cd01045 Ferritin_like_AB Uncha 96.9 0.02 4.2E-07 48.0 11.4 121 140-272 13-138 (139)
10 cd01046 Rubrerythrin_like rubr 96.7 0.012 2.7E-07 51.0 9.3 92 162-277 32-123 (123)
11 PF02915 Rubrerythrin: Rubrery 96.7 0.002 4.3E-08 54.1 4.0 101 165-272 31-136 (137)
12 cd07911 RNRR2_Rv0233_like Ribo 96.5 0.12 2.5E-06 50.8 15.5 172 92-292 18-219 (280)
13 cd07908 Mn_catalase_like Manga 96.5 0.025 5.3E-07 50.3 9.9 104 162-272 46-153 (154)
14 cd00907 Bacterioferritin Bacte 96.4 0.15 3.2E-06 44.7 14.1 105 162-277 36-141 (153)
15 PF00210 Ferritin: Ferritin-li 96.3 0.071 1.5E-06 44.9 11.4 109 160-276 28-139 (142)
16 PRK08326 ribonucleotide-diphos 96.3 0.073 1.6E-06 53.3 12.9 167 91-282 35-229 (311)
17 PF02915 Rubrerythrin: Rubrery 96.2 0.014 3E-07 49.0 6.6 54 222-276 3-56 (137)
18 PF00268 Ribonuc_red_sm: Ribon 96.2 0.18 4E-06 49.2 14.9 161 92-279 28-211 (281)
19 PRK10635 bacterioferritin; Pro 95.7 0.2 4.3E-06 45.7 11.9 104 162-276 37-141 (158)
20 PRK09614 nrdF ribonucleotide-d 95.4 0.32 6.9E-06 48.7 13.2 168 92-283 31-219 (324)
21 cd01051 Mn_catalase Manganese 95.3 0.32 6.9E-06 44.4 11.8 56 217-275 99-154 (156)
22 PRK07209 ribonucleotide-diphos 95.1 0.9 1.9E-05 46.7 16.0 167 92-282 68-268 (369)
23 COG1633 Uncharacterized conser 95.1 0.41 8.8E-06 44.6 12.2 139 128-278 26-171 (176)
24 COG0208 NrdF Ribonucleotide re 94.9 0.93 2E-05 46.6 15.1 174 91-292 45-251 (348)
25 cd01044 Ferritin_CCC1_N Ferrit 94.8 0.054 1.2E-06 46.8 5.3 46 228-276 9-54 (125)
26 cd01052 DPSL DPS-like protein, 94.8 0.39 8.6E-06 41.7 10.7 107 162-272 37-147 (148)
27 PTZ00211 ribonucleoside-diphos 94.7 0.92 2E-05 45.8 14.6 163 93-282 42-227 (330)
28 PRK12759 bifunctional gluaredo 94.7 0.79 1.7E-05 47.7 14.4 163 93-282 118-302 (410)
29 TIGR00754 bfr bacterioferritin 94.0 1.5 3.3E-05 39.1 12.8 105 162-277 37-142 (157)
30 cd01041 Rubrerythrin Rubreryth 93.9 0.36 7.8E-06 42.0 8.4 96 228-335 12-117 (134)
31 PRK13967 nrdF1 ribonucleotide- 93.9 2.6 5.7E-05 42.5 15.7 158 92-277 31-210 (322)
32 cd01046 Rubrerythrin_like rubr 93.7 0.6 1.3E-05 40.5 9.5 86 228-329 12-99 (123)
33 cd01056 Euk_Ferritin eukaryoti 93.7 0.36 7.7E-06 43.5 8.4 110 162-280 36-147 (161)
34 PRK13965 ribonucleotide-diphos 93.7 3.5 7.5E-05 41.9 16.3 165 92-275 44-221 (335)
35 PF13668 Ferritin_2: Ferritin- 93.7 1 2.2E-05 39.1 10.8 98 162-274 37-136 (137)
36 PF02332 Phenol_Hydrox: Methan 92.9 4 8.7E-05 39.3 14.6 145 127-282 75-233 (233)
37 PRK13966 nrdF2 ribonucleotide- 92.6 11 0.00023 38.3 17.8 172 92-283 33-218 (324)
38 cd01045 Ferritin_like_AB Uncha 91.9 0.44 9.6E-06 39.7 6.0 48 227-277 8-55 (139)
39 PLN02492 ribonucleoside-diphos 91.3 4.8 0.0001 40.5 13.6 163 92-281 30-215 (324)
40 cd00657 Ferritin_like Ferritin 90.8 0.89 1.9E-05 36.0 6.4 54 225-282 6-59 (130)
41 PRK10304 ferritin; Provisional 90.1 6.7 0.00015 36.0 12.3 104 162-275 36-143 (165)
42 COG1592 Rubrerythrin [Energy p 90.0 1.8 4E-05 40.3 8.5 80 231-323 18-100 (166)
43 PF04305 DUF455: Protein of un 89.7 7.1 0.00015 38.6 12.8 50 244-293 176-225 (253)
44 cd01057 AAMH_A Aromatic and Al 88.8 23 0.00049 38.0 16.7 138 133-282 85-235 (465)
45 PRK09101 nrdB ribonucleotide-d 88.5 12 0.00026 38.6 14.1 180 78-282 35-261 (376)
46 cd07908 Mn_catalase_like Manga 87.8 1.3 2.7E-05 39.4 5.7 56 225-282 24-79 (154)
47 PRK13456 DNA protection protei 87.4 19 0.00041 34.3 13.5 144 125-283 19-168 (186)
48 cd07910 MiaE MiaE tRNA-modifyi 86.6 4 8.7E-05 38.5 8.5 109 163-278 48-160 (180)
49 COG1633 Uncharacterized conser 86.3 2 4.4E-05 40.0 6.4 61 217-280 24-84 (176)
50 cd01043 DPS DPS protein, ferri 86.0 11 0.00023 32.8 10.4 113 158-271 25-137 (139)
51 TIGR02029 AcsF magnesium-proto 85.3 1.6 3.5E-05 44.5 5.5 43 232-275 88-130 (337)
52 cd01044 Ferritin_CCC1_N Ferrit 84.5 3.7 8E-05 35.4 6.8 98 163-274 27-124 (125)
53 cd01047 ACSF Aerobic Cyclase S 81.7 2.5 5.5E-05 42.9 5.2 47 228-275 74-120 (323)
54 PF05138 PaaA_PaaC: Phenylacet 81.7 4.9 0.00011 39.7 7.2 116 170-293 53-179 (263)
55 CHL00185 ycf59 magnesium-proto 81.1 3 6.5E-05 42.8 5.6 42 232-274 94-135 (351)
56 PRK13654 magnesium-protoporphy 81.1 2.7 5.9E-05 43.2 5.3 42 233-275 99-140 (355)
57 cd00904 Ferritin Ferritin iron 80.5 13 0.00028 33.5 9.0 107 162-277 36-144 (160)
58 PLN02508 magnesium-protoporphy 80.4 2.5 5.3E-05 43.4 4.7 42 233-275 95-136 (357)
59 PF06175 MiaE: tRNA-(MS[2]IO[6 79.7 4.5 9.7E-05 39.8 6.0 155 98-286 61-219 (240)
60 PRK12775 putative trifunctiona 78.6 30 0.00066 40.3 13.3 151 115-280 849-1002(1006)
61 cd01058 AAMH_B Aromatic and Al 77.5 29 0.00063 34.9 11.3 140 131-282 105-260 (304)
62 COG4445 MiaE Hydroxylase for s 77.1 5.6 0.00012 37.5 5.6 115 170-293 65-185 (203)
63 cd01048 Ferritin_like_AB2 Unch 76.9 12 0.00026 33.0 7.5 92 173-272 36-134 (135)
64 cd01055 Nonheme_Ferritin nonhe 76.3 25 0.00054 30.9 9.4 48 228-275 14-61 (156)
65 TIGR02029 AcsF magnesium-proto 73.5 4.8 0.0001 41.2 4.5 45 143-187 165-209 (337)
66 cd01047 ACSF Aerobic Cyclase S 72.1 4.2 9.1E-05 41.4 3.7 53 143-199 155-207 (323)
67 PLN02508 magnesium-protoporphy 69.9 5.2 0.00011 41.2 3.9 44 144-187 172-215 (357)
68 CHL00185 ycf59 magnesium-proto 68.3 6.6 0.00014 40.4 4.2 45 143-187 171-215 (351)
69 PRK12775 putative trifunctiona 67.7 8.8 0.00019 44.6 5.6 47 226-275 869-915 (1006)
70 cd01048 Ferritin_like_AB2 Unch 63.2 11 0.00023 33.4 4.1 50 221-276 4-53 (135)
71 PRK13654 magnesium-protoporphy 62.9 4 8.6E-05 42.0 1.5 45 143-187 175-219 (355)
72 PRK15022 ferritin-like protein 60.7 1.4E+02 0.0031 27.7 12.2 106 162-277 36-142 (167)
73 cd00907 Bacterioferritin Bacte 59.1 26 0.00055 30.5 5.8 48 228-275 16-63 (153)
74 PF13763 DUF4167: Domain of un 57.4 26 0.00055 29.2 5.0 36 235-277 41-76 (80)
75 COG1592 Rubrerythrin [Energy p 57.2 20 0.00043 33.5 4.9 43 236-278 89-131 (166)
76 PF00268 Ribonuc_red_sm: Ribon 54.8 43 0.00093 32.7 7.1 90 170-283 29-118 (281)
77 cd06102 citrate_synt_like_2 Ci 54.8 2.4E+02 0.0051 28.4 12.4 118 167-324 86-207 (282)
78 cd01052 DPSL DPS-like protein, 53.5 57 0.0012 28.2 7.0 61 229-290 18-78 (148)
79 TIGR03225 benzo_boxB benzoyl-C 51.3 81 0.0018 33.6 8.7 195 68-279 15-256 (471)
80 PF05067 Mn_catalase: Manganes 50.4 1.3E+02 0.0028 30.4 9.8 112 166-280 56-198 (283)
81 COG2833 Uncharacterized protei 49.5 1.7E+02 0.0038 29.2 10.1 80 240-335 181-264 (268)
82 COG1528 Ftn Ferritin-like prot 49.2 2.2E+02 0.0048 26.8 10.4 112 162-283 36-148 (167)
83 TIGR02158 PA_CoA_Oxy3 phenylac 45.9 2.3E+02 0.005 27.8 10.5 116 173-293 32-153 (237)
84 cd01051 Mn_catalase Manganese 45.9 50 0.0011 30.1 5.6 56 221-278 27-82 (156)
85 cd07911 RNRR2_Rv0233_like Ribo 44.1 76 0.0016 31.1 7.0 32 246-277 75-106 (280)
86 cd01050 Acyl_ACP_Desat Acyl AC 41.9 85 0.0018 31.9 7.0 80 219-300 61-144 (297)
87 COG2186 FadR Transcriptional r 40.6 61 0.0013 31.2 5.7 61 230-293 149-225 (241)
88 cd01049 RNRR2 Ribonucleotide R 40.4 51 0.0011 32.0 5.1 33 246-278 74-106 (288)
89 PRK08326 ribonucleotide-diphos 40.3 50 0.0011 33.2 5.2 40 237-276 80-122 (311)
90 PF06667 PspB: Phage shock pro 39.4 49 0.0011 27.1 4.0 40 333-377 22-61 (75)
91 COG3396 Uncharacterized conser 36.7 30 0.00064 34.7 2.8 78 248-349 45-126 (265)
92 PRK09458 pspB phage shock prot 35.4 52 0.0011 27.1 3.6 39 334-377 23-61 (75)
93 cd01042 DMQH Demethoxyubiquino 34.5 91 0.002 29.0 5.5 51 229-283 12-62 (165)
94 smart00337 BCL BCL (B-Cell lym 33.3 68 0.0015 26.9 4.1 31 262-293 9-39 (100)
95 PRK13456 DNA protection protei 28.4 5.3E+02 0.012 24.7 10.7 110 225-335 28-146 (186)
96 KOG1248 Uncharacterized conser 28.2 2.2E+02 0.0047 34.2 8.2 104 248-377 826-930 (1176)
97 TIGR00865 bcl-2 Apoptosis regu 26.8 1.3E+02 0.0028 29.2 5.3 34 262-296 79-112 (213)
98 COG2193 Bfr Bacterioferritin ( 26.7 4.7E+02 0.01 24.5 8.6 100 164-274 39-139 (157)
99 TIGR02976 phageshock_pspB phag 26.4 1.1E+02 0.0023 25.1 4.0 40 333-377 22-61 (75)
100 PF13668 Ferritin_2: Ferritin- 26.2 1.9E+02 0.0042 24.7 5.9 29 246-274 35-63 (137)
101 PF00210 Ferritin: Ferritin-li 25.2 2.8E+02 0.006 23.0 6.5 61 229-290 11-71 (142)
102 PF12902 Ferritin-like: Ferrit 24.8 1.3E+02 0.0029 29.1 5.1 49 228-276 7-55 (227)
103 TIGR02156 PA_CoA_Oxy1 phenylac 24.8 7.5E+02 0.016 25.1 14.1 156 173-343 63-232 (289)
104 PF04305 DUF455: Protein of un 24.6 57 0.0012 32.3 2.5 21 256-276 105-125 (253)
105 PF11583 AurF: P-aminobenzoate 24.4 1.3E+02 0.0028 29.6 5.0 30 248-277 111-140 (304)
106 PF00452 Bcl-2: Apoptosis regu 22.2 1.8E+02 0.0039 23.7 4.7 32 262-293 9-40 (101)
107 COG3396 Uncharacterized conser 22.0 8.3E+02 0.018 24.7 10.8 115 173-293 58-179 (265)
108 PRK07209 ribonucleotide-diphos 21.8 1.7E+02 0.0037 30.2 5.4 38 245-283 124-161 (369)
109 PF09968 DUF2202: Uncharacteri 21.3 5.2E+02 0.011 24.2 7.9 91 174-275 36-140 (162)
110 COG2406 Protein distantly rela 21.3 6.9E+02 0.015 23.5 10.2 105 167-275 53-161 (172)
111 PF05974 DUF892: Domain of unk 21.1 2.2E+02 0.0048 25.8 5.4 106 165-275 36-152 (159)
112 PRK09614 nrdF ribonucleotide-d 20.9 1.6E+02 0.0034 29.6 4.8 32 245-276 84-115 (324)
113 PRK10421 DNA-binding transcrip 20.3 3.1E+02 0.0068 26.0 6.6 60 231-293 141-218 (253)
No 1
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=100.00 E-value=1.3e-137 Score=1027.11 Aligned_cols=353 Identities=87% Similarity=1.383 Sum_probs=346.3
Q ss_pred cccCCCCCCCCccccccccCCCCcchHHHHHHhHHHHHHHhhhhccccccCCCCCCCCCCCCCCCchHHHHHHHHhhcCC
Q 016050 44 VENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKEL 123 (396)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~~~Le~~v~~~~~~~L~pv~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~L 123 (396)
....++++.+|.+++.|++|||+|+|+|||++||+||++||++||||+|++|||||||||++|+||.++|++||+++++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~evl~~LE~~ve~~l~~hL~pvek~WqPhDflP~~~~~~F~~~v~~lr~~~~~L 115 (390)
T PLN00179 36 VEAAKKPFAPPREVHVQVTHSMPPEKLEIFKSLEGWAEENLLPLLKPVEKSWQPQDFLPDPASEGFYDQVKELRERAAEL 115 (390)
T ss_pred hhhccccCCCchhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHhchHhhccCccccCCCCccCChHHHHhhhhHhhcCC
Confidence 55667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhccchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHH
Q 016050 124 PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQ 203 (396)
Q Consensus 124 pdd~~v~Lv~~miTEdnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~ 203 (396)
||++++||||||||||||||||++||++||++|+||+++++|++|+++||||||||||+||+||||||+|||+++|+++|
T Consensus 116 pd~~~v~LvgdmiTEeaLPtY~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~t~q 195 (390)
T PLN00179 116 PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQ 195 (390)
T ss_pred ChhhhhhhhhcchhhhcchHHHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhccCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCc
Q 016050 204 YLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDG 283 (396)
Q Consensus 204 ~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 283 (396)
++|++||+|+++++||++||||||||+||+|||+|||++|+++|||+|++||++||+||+||+.||+++|+++||+|||+
T Consensus 196 ~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~ 275 (390)
T PLN00179 196 YLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDG 275 (390)
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCcccCCCCCcchhhhHHHHHHHHhCCCChhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcc
Q 016050 284 TIVSFADMMRKKISMPAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVEKLTGLSGEAQKAQDYVCGL 363 (396)
Q Consensus 284 tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~s~vaqr~GvYt~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l 363 (396)
||.||++||+|||+||||+|+||+|++||+||++++|++||||+.||.|||++||++|+|++|+|||+||+|||||||+|
T Consensus 276 tm~Aiadmm~~ki~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l~gLs~eg~kArd~l~~l 355 (390)
T PLN00179 276 AVLAFADMMRKKITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEELTGLSGEGRRAQDYVCGL 355 (390)
T ss_pred HHHHHHHHHHhcCCCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcccCCCHHHHHHHHHHHHh
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhchhcCC--CCccceeeeCCccCC
Q 016050 364 PARIRRLEERAQGRAKQG--PTIPFSWIYDRQVQL 396 (396)
Q Consensus 364 ~~r~~r~~er~~~~~~~~--~~~~f~wi~~~~~~~ 396 (396)
|+||+||+||++.|+|+. ..++|||||+|+|.|
T Consensus 356 ~~rirr~~era~~~~~~~~~~~~~fsWi~~r~v~~ 390 (390)
T PLN00179 356 PPRIRRLEERAQDRAKKAKPPSIPFSWIFDREVRL 390 (390)
T ss_pred HHHHHHHHHHHhhHHhccCCCCCceeeecCCccCC
Confidence 999999999999999875 378999999999975
No 2
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=100.00 E-value=4.2e-121 Score=903.00 Aligned_cols=329 Identities=59% Similarity=0.980 Sum_probs=292.7
Q ss_pred CcchHHHHHHhHHHHHHHhhhhccccccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHHHHhhhccchhhHH
Q 016050 66 PPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQ 145 (396)
Q Consensus 66 ~~~~~ev~~~Le~~v~~~~~~~L~pv~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv~~miTEdnLPtY~ 145 (396)
||+|+|||++|||||++||++||+|++++|||||||||++|+||..++++||++|++|||++++||+|||||||||||||
T Consensus 1 ~~~~~evl~~Le~~v~~~~~~~l~~~~~~W~PhD~lP~~~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~llTEd~LPsY~ 80 (330)
T PF03405_consen 1 PPEKLEVLRELEPVVEENLLRHLKPVEKDWQPHDFLPWSEGRNFFLGGKDWRPSQSTLPDDARVALVGNLLTEDNLPSYH 80 (330)
T ss_dssp -GGGHHHHHHCHHHHHHHCHHHCH-CGGS--GGGGS-GCCSTTHHHCCHHHHHHHHTS-HHHHHHHHHHHHHHHTHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhHHhhCCCccccCCCCccccHhHhcccCCHhhccCCHHHHHHHHHHHHhhhhhhHHH
Confidence 68999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhh
Q 016050 146 TMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYT 225 (396)
Q Consensus 146 ~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYt 225 (396)
++|+++||++|++|+|+++|++|+++|||||||||++||+|||+||+|||+++|+++++++..||+++++++|+++|+|+
T Consensus 81 ~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~~r~~~i~~G~~~~~~~~p~~~~vYt 160 (330)
T PF03405_consen 81 RELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALERTRMYLITAGFDPGFESDPYLGFVYT 160 (330)
T ss_dssp HHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCHCCHHHHHH----S-TTHHHHHHHHH
T ss_pred HHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHHhccCCCcccCCC
Q 016050 226 SFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKISMPAHLMYD 305 (396)
Q Consensus 226 sfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~d 305 (396)
||||+||++||+|||++|+++|||||++||++||+||+||+.||+++|+++|++|||++|.||++||+++|+|||++|+|
T Consensus 161 sfQE~AT~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd~t~~Ai~~vm~~~f~MPg~~m~d 240 (330)
T PF03405_consen 161 SFQERATQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPDGTMLAIADVMRNKFRMPGHLMPD 240 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH----TTTT---
T ss_pred HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHhccCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999779999999999
Q ss_pred CCcchhhhHHHHHHHHhCCCChhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHHHhchhcCC-CCc
Q 016050 306 GRDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVEKLTGLSGEAQKAQDYVCGLPARIRRLEERAQGRAKQG-PTI 384 (396)
Q Consensus 306 g~~~~lf~~~s~vaqr~GvYt~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~-~~~ 384 (396)
|+|+++|++|++++|++||||+.+|.+||++||++|+|++++|||+||++||||||+||.|++||+||++.++++. ..+
T Consensus 241 g~d~~lF~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~~~~~~~~~ 320 (330)
T PF03405_consen 241 GRDPDLFERFSAVAARAGVYTPRDYADILEPLLRRWKIESRTGLSGEGEKARDYLCALPARLRRFEERADRRAARMAKPV 320 (330)
T ss_dssp SS-TTHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG--S--HHHHHHHHHHHHHHHHHHHHTTTTSTTTSSS--EE
T ss_pred CcchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCcccCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998776 478
Q ss_pred cceeeeCCcc
Q 016050 385 PFSWIYDRQV 394 (396)
Q Consensus 385 ~f~wi~~~~~ 394 (396)
+|||||||+|
T Consensus 321 ~fswif~r~v 330 (330)
T PF03405_consen 321 PFSWIFNREV 330 (330)
T ss_dssp E-GGGTT-EE
T ss_pred ceeeecCCCC
Confidence 9999999987
No 3
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=100.00 E-value=9.1e-103 Score=764.97 Aligned_cols=297 Identities=69% Similarity=1.103 Sum_probs=288.4
Q ss_pred chHHHHHHhHHHHHHHhhhhccccccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHHHHhhhccchhhHHHH
Q 016050 68 QKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTM 147 (396)
Q Consensus 68 ~~~ev~~~Le~~v~~~~~~~L~pv~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv~~miTEdnLPtY~~~ 147 (396)
.|+|||++|||||++|++++|+|++++|||||||||++++||..++++||+++++|||+++++|+++||||||||+||++
T Consensus 1 ~~~el~~~le~~~~~~~~~~~~~~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~~~ 80 (297)
T cd01050 1 TKLELLRSLEPVVEENLLNRLKPVEKDWQPHDFLPDSASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYHSM 80 (297)
T ss_pred ChhHHHHHHHHHHHHHHHHhcccHhhccCCcccCCCCCCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHHHH
Confidence 47899999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHh
Q 016050 148 LNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSF 227 (396)
Q Consensus 148 L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsf 227 (396)
||++||++++ ++++|++|+++||+||||||++|++||++||+|||+++|++++++++.||+++++++|+++|+|+||
T Consensus 81 L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~G~~~~~~~~~~~~~~y~~f 157 (297)
T cd01050 81 LNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGSGFDPGTDNSPYRGFVYTSF 157 (297)
T ss_pred HHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHH
Confidence 9999999776 6799999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHHhccCCCcccCCCCC
Q 016050 228 QERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKISMPAHLMYDGR 307 (396)
Q Consensus 228 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg~ 307 (396)
||+||++||+|||++++ +|||||++||++||+||+||++||+++|+++|++||+++|.||++||+ +|+|||++|.
T Consensus 158 qE~aT~v~y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~~~~~Ai~~v~~-~~~MP~~~~~--- 232 (297)
T cd01050 158 QELATRISHRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDGAVLAFADMMR-KIVMPGHLMY--- 232 (297)
T ss_pred HHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH-hCCCChhhhh---
Confidence 99999999999999988 899999999999999999999999999999999999999999999997 6999999995
Q ss_pred cchhhhHHHHHHHHhCCCChhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHHH
Q 016050 308 DDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVEKLTGLSGEAQKAQDYVCGLPARIRRLEERA 374 (396)
Q Consensus 308 ~~~lf~~~s~vaqr~GvYt~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~ 374 (396)
.+|++|++++|++||||+.+|++||++++++|+|++++|||+||+|||||||+||+|++|++||+
T Consensus 233 --~~f~~~~~~~a~~gvY~~~~~~~V~~~~~~~w~v~~l~~l~~eg~~ar~~~~~l~~~~~~~~~r~ 297 (297)
T cd01050 233 --PLFERFAAVAARAGVYTARDYDDILEPLVRRWRVEELTGLSGEGRKAQEYLCALPARLRRLAERA 297 (297)
T ss_pred --hhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 34889999999999999999999999999999999999999999999999999999999999874
No 4
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.86 E-value=4.1e-08 Score=78.75 Aligned_cols=126 Identities=21% Similarity=0.186 Sum_probs=91.5
Q ss_pred HHHHhhhc-cchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcC
Q 016050 131 LVGDMITE-EALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSG 209 (396)
Q Consensus 131 Lv~~miTE-dnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G 209 (396)
|...+..| .+.-.|........ ++.+..+...|..||.+|.+.|.+++.--|...+..... ....+
T Consensus 3 L~~~~~~E~~a~~~y~~~~~~~~---------~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~----~~~~~ 69 (130)
T cd00657 3 LNDALAGEYAAIIAYGQLAARAP---------DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH----LLAAY 69 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHhc
Confidence 34444455 33444554444332 678889999999999999999999996544443333222 11222
Q ss_pred CCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016050 210 MDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKI 272 (396)
Q Consensus 210 ~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 272 (396)
.......++...+.+....|..+...|.++.+.+ .|+.+++++..|+.||.+|..+++++
T Consensus 70 ~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~---~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 70 ALPKTSDDPAEALRAALEVEARAIAAYRELIEQA---DDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2223335788899999999999999999998864 49999999999999999999999875
No 5
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=97.77 E-value=0.00028 Score=69.23 Aligned_cols=206 Identities=15% Similarity=0.187 Sum_probs=122.9
Q ss_pred cchHHHH-HHhHHHHHHHh---hhhcc-----------ccccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHH---
Q 016050 67 PQKIEIF-KSMEDWAENNI---LVHLK-----------PVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYF--- 128 (396)
Q Consensus 67 ~~~~ev~-~~Le~~v~~~~---~~~L~-----------pv~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~--- 128 (396)
++.-+++ +-++.|++..- ++.+. +..+.|.|.+++|--.-+-| ..||++.+
T Consensus 6 ~~~~~~~~rL~~~~~~r~~v~~dp~~didWd~~~~~~~~~~~~~~p~~~~pl~gtp~~-----------~~l~~~~r~~l 74 (304)
T PF11583_consen 6 PDREETLQRLLESWARRSYVRSDPETDIDWDAPDDEDFDPDRPWLPPELLPLYGTPLW-----------ERLSEEQRIEL 74 (304)
T ss_dssp ----HHHHHHHHHHHHH-HHHHSTTGG------GGTT--TTS-SS-GGGSTTTT-HHH-----------HTS-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccCCchhhhhhhhhhcccCCCcccCCCcccCccCCCHHH-----------HhCCHHHHHHH
Confidence 3444455 44567888877 65521 23555666666664322222 23555444
Q ss_pred ------HHHHHHhhhccchh--hHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhC-------CC
Q 016050 129 ------VVLVGDMITEEALP--TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSG-------RV 193 (396)
Q Consensus 129 ------v~Lv~~miTEdnLP--tY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsg-------rv 193 (396)
..+...+..|..|- .....+...++.. -+.+...+..+...||++|...-.+|+-.+| ..
T Consensus 75 ~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~ 149 (304)
T PF11583_consen 75 LRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSD-----PDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLP 149 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTT-----T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCC
Confidence 34445566676654 4444554555441 1456677788999999999999999997766 11
Q ss_pred ChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHH
Q 016050 194 DMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIV 273 (396)
Q Consensus 194 Dp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv 273 (396)
.+........ .+...+.+. ..+...|+..++-|.....+.+.+.+= ..-.|.++++++....||+||..|+..++
T Consensus 150 ~~~~~~~~~~-~l~~~~~~~--~~~~~~~~~~lv~Ee~i~~~~~~~~~D--~~iqP~~r~v~~iH~~DEaRHi~f~~~~l 224 (304)
T PF11583_consen 150 PPYPPRRLLR-RLARLLPPW--ERGLLFFAFALVAEEIIDAYQREIARD--ETIQPLVRQVMRIHVRDEARHIAFAREEL 224 (304)
T ss_dssp --HHHHHHHH-HHHTS-SHH--HHHHHHHHHHHHHHHSBHHHHHHHHT---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHH-HHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHhhcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 233233321 124668888888888877766655441 12379999999999999999999999999
Q ss_pred HHHHhhCCCchHHHHHHHHH
Q 016050 274 EKLFEIDPDGTIVSFADMMR 293 (396)
Q Consensus 274 ~~~le~dPd~tm~Aia~mm~ 293 (396)
+.....-+......++..+.
T Consensus 225 ~~~~~~l~~~~r~~~~~~l~ 244 (304)
T PF11583_consen 225 RRVWPRLSPAERRALAELLP 244 (304)
T ss_dssp HHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 99999998877777776665
No 6
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=97.27 E-value=0.0092 Score=58.00 Aligned_cols=178 Identities=18% Similarity=0.173 Sum_probs=109.5
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHH--------HHHhhhccchhhHHHHhhhhccCcccCCCCch
Q 016050 92 EKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVL--------VGDMITEEALPTYQTMLNTLDGVRDETGASLT 163 (396)
Q Consensus 92 ~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~L--------v~~miTEdnLPtY~~~L~~~fgv~de~g~~~~ 163 (396)
..-|.|.+ +|.+. ..++|.. ||++-+.++ .++.++-+++...-... . ..+
T Consensus 20 ~~~W~p~e-i~~~~------D~~~~~~----l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~---~--------~~~ 77 (288)
T cd01049 20 ANFWTPEE-IDLSK------DLKDWEK----LTEAERHFIKRVLAFLAALDSIVGENLVELFSRH---V--------QIP 77 (288)
T ss_pred HcCCChhh-cchhh------hHHHHhH----CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---c--------ChH
Confidence 35899999 65533 3445544 455544332 34555555554333221 1 156
Q ss_pred hHhHHhhcchhhhhhhhHHHHhHHhHhCCCC--hHH----------hHHHHHHHhhcCCCCC---CCCCchhhHhhhHhh
Q 016050 164 SWAIWTRAWTAEENRHGDLLNKYLYLSGRVD--MRQ----------IEKTIQYLIGSGMDPR---TENSPYLGFIYTSFQ 228 (396)
Q Consensus 164 ~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvD--p~~----------lE~~~~~li~~G~d~~---~~~~p~~~~vYtsfQ 228 (396)
+...+...+.++|+.|+.+-..++-.-+. | ... +.+. ...+..-++.. +..+.+..++.-.+.
T Consensus 78 e~~~~~~~q~~~E~iH~e~Ys~il~~l~~-~~e~~~~~~~~~~~~~l~~k-~~~~~~~~~~~~~~~~~~~~~~lv~~~~l 155 (288)
T cd01049 78 EARAFYGFQAFMENIHSESYSYILDTLGK-DEERDELFEAIETDPALKKK-ADWILRWYDNLDDNTKESFAERLVAFAIL 155 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccHHHHHHHHhcCHHHHHH-HHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 77788999999999999999999833222 2 111 1111 12222222221 112445566554788
Q ss_pred hhhHH-HHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCC----chHHHHHHHHH
Q 016050 229 ERATF-ISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD----GTIVSFADMMR 293 (396)
Q Consensus 229 E~AT~-ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd----~tm~Aia~mm~ 293 (396)
|..-+ .++..+..+.+..-=|-++++...|.+||.+|..|...++..+++..|. .....+.++++
T Consensus 156 Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~ 225 (288)
T cd01049 156 EGIFFYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIK 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHH
Confidence 87766 4566565665533358899999999999999999999999999998886 23344444444
No 7
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=97.19 E-value=0.0031 Score=54.93 Aligned_cols=99 Identities=25% Similarity=0.164 Sum_probs=79.5
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHH-hHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhh-HHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERA-TFISHGNT 239 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~A-T~ish~nt 239 (396)
....+.|.+.=..||..|+..+.+|+ -+-|.++ .. +...++....|-..-=.|.. +...|.++
T Consensus 32 ~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~------------~~---~~~~~~~~~~l~~~~~~E~~e~~~~y~~~ 96 (134)
T cd01041 32 YEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT------------GP---PIGIGDTLENLKAAIAGETYEYTEMYPEF 96 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------------CC---CCCcchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788899988999999999999999 4444444 10 11113556677777778885 66889999
Q ss_pred HHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 240 ARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 240 arla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
.++|...||...+.+...|+.||..|...|.+.++.
T Consensus 97 ~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 97 AEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998765
No 8
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=97.09 E-value=0.012 Score=52.01 Aligned_cols=109 Identities=24% Similarity=0.190 Sum_probs=88.2
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHhH-hCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLYL-SGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTA 240 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~l-sgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 240 (396)
.+.++.|.+....||-.|+..+-+|+.. -|.++...+... . . ...++...+-...-.|+.....|.++.
T Consensus 34 ~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~-----~----~-~~~~~~~~l~~al~~E~~~~~~~~~l~ 103 (156)
T cd01055 34 LDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAP-----P----S-EFESLLEVFEAALEHEQKVTESINNLV 103 (156)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCC-----C----c-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999954 345554443320 0 0 113566777777778988999999999
Q ss_pred HHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhC
Q 016050 241 RLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 280 (396)
Q Consensus 241 rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 280 (396)
++|...||++...++..|..||..|...+.+++..+-...
T Consensus 104 ~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l~~~g 143 (156)
T cd01055 104 DLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLKLAG 143 (156)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999998766553
No 9
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=96.85 E-value=0.02 Score=47.96 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=79.2
Q ss_pred chhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhC--CCChHHhHHHHHHHhhcCC---CCCC
Q 016050 140 ALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSG--RVDMRQIEKTIQYLIGSGM---DPRT 214 (396)
Q Consensus 140 nLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsg--rvDp~~lE~~~~~li~~G~---d~~~ 214 (396)
+.-.|.+...... +..-..+...=..||-+|.+.|...+.--+ .+.+..............+ ....
T Consensus 13 ~~~~Y~~~a~~~~---------~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (139)
T cd01045 13 AAEFYLELAEKAK---------DPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALES 83 (139)
T ss_pred HHHHHHHHHhHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHHh
Confidence 4445665544433 345677888888999999999999985443 2221111111111111111 0111
Q ss_pred CCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016050 215 ENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKI 272 (396)
Q Consensus 215 ~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 272 (396)
..+....+-..---|.....+|.++++ ..+||..+.++..|+.||.+|...+.++
T Consensus 84 ~~~~~~~l~~a~~~E~~~~~~Y~~~~~---~~~d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 84 LMDPLEALRLAIEIEKDAIEFYEELAE---KAEDPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235566777777788888899997776 4779999999999999999999988764
No 10
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=96.72 E-value=0.012 Score=51.02 Aligned_cols=92 Identities=21% Similarity=0.192 Sum_probs=76.5
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTAR 241 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntar 241 (396)
....+.|.+.=..||..|+..+.+++ +.+. .+....|-..-=+|..-...|.++.+
T Consensus 32 ~~~~A~~f~~~a~eE~~HA~~~~~~l---~~i~---------------------~~~~~~le~a~~~E~~~~~~~~~~~~ 87 (123)
T cd01046 32 YPEVAEELKRIAMEEAEHAARFAELL---GKVS---------------------EDTKENLEMMLEGEAGANEGKKDAAT 87 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---hcCc---------------------ccHHHHHHHHHHhHHHHHHhHHHHHH
Confidence 56788899888999999999999866 2221 25566666666677766667899999
Q ss_pred HHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016050 242 LAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 242 la~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 277 (396)
.|..-||...+..+..|+.||..|...|.+.++.|+
T Consensus 88 ~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~~ 123 (123)
T cd01046 88 EAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERYF 123 (123)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999998763
No 11
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.67 E-value=0.002 Score=54.15 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=65.5
Q ss_pred HhHHhhcchhhhhhhhHHHHhHHh-HhCCCChHHhHHHHHHHhhcCCCCCCCCC---chhhHhhhHhh-hhhHHHHHHHH
Q 016050 165 WAIWTRAWTAEENRHGDLLNKYLY-LSGRVDMRQIEKTIQYLIGSGMDPRTENS---PYLGFIYTSFQ-ERATFISHGNT 239 (396)
Q Consensus 165 W~~Wv~~WTAEEnRHG~aLr~YL~-lsgrvDp~~lE~~~~~li~~G~d~~~~~~---p~~~~vYtsfQ-E~AT~ish~nt 239 (396)
-..-...=..+|-+|...|.+.+- ..+..+|..... .+...+.+..... .+...+..+.+ |.-+..+|..+
T Consensus 31 ~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~ 106 (137)
T PF02915_consen 31 LKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEE----KVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAEL 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCC----CCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhh----hhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667789999999998883 223333431111 1111122211111 24455555555 77778888877
Q ss_pred HHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016050 240 ARLAKEHGDMKLAQICGTIASDEKRHETAYTKI 272 (396)
Q Consensus 240 arla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 272 (396)
++ ..+||..++++..|+.||.+|...|.++
T Consensus 107 a~---~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 107 AR---KAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HH---HTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66 5889999999999999999999999876
No 12
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=96.49 E-value=0.12 Score=50.77 Aligned_cols=172 Identities=18% Similarity=0.238 Sum_probs=97.3
Q ss_pred cc-CCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHH--------HHhhhccch-hhHHHHhhhhccCcccCCCC
Q 016050 92 EK-CWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLV--------GDMITEEAL-PTYQTMLNTLDGVRDETGAS 161 (396)
Q Consensus 92 ~~-~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv--------~~miTEdnL-PtY~~~L~~~fgv~de~g~~ 161 (396)
.. -|.|.+ +|++. .+++|+ +|+++-+.++. ++.++-.+| |.+.... .++
T Consensus 18 ~~~~W~~~e-id~s~------D~~~w~----~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~--~~~-------- 76 (280)
T cd07911 18 RKGFWNPAD-IDFSQ------DREDWE----QLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMA--AEG-------- 76 (280)
T ss_pred ccCCCCHHH-cCccc------hHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC--------
Confidence 44 699999 77654 344564 37776554432 334333444 3332110 011
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHh-HhCCCChHHh----HHHH--H---HHhhcCCCCCCCCCch---h-hHhhhHh
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLY-LSGRVDMRQI----EKTI--Q---YLIGSGMDPRTENSPY---L-GFIYTSF 227 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~-lsgrvDp~~l----E~~~--~---~li~~G~d~~~~~~p~---~-~~vYtsf 227 (396)
..+...+...=..+|++|+.+-..++- +...-|.... +... + ..+..-++ ..++. . .++|..+
T Consensus 77 ~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~ 153 (280)
T cd07911 77 RLEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPFYEALPYAELRLYL---DASPAAQVRASVTYNMI 153 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhhhhhHHHHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHH
Confidence 234455677888999999999999983 3221111111 1111 1 11221111 11222 2 3456668
Q ss_pred hhhhHHHH-----HHHHHHHHHhhC-CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHH
Q 016050 228 QERATFIS-----HGNTARLAKEHG-DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMM 292 (396)
Q Consensus 228 QE~AT~is-----h~ntarla~~~g-DPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm 292 (396)
.|---+-+ +..+++ .| -|-+.++...|.+||.+|-.|...+++.+...+|. ....+.+.+
T Consensus 154 lEGilf~sgF~~~~~~l~~----~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~-~~~~~~e~~ 219 (280)
T cd07911 154 VEGVLAETGYYAWRTICEK----RGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDA-NWDVFEERM 219 (280)
T ss_pred HHHHHHHHHHHHHHHHHhh----cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChh-HHHHHHHHH
Confidence 88744332 222333 34 88899999999999999999999999999988873 333344444
No 13
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.47 E-value=0.025 Score=50.29 Aligned_cols=104 Identities=16% Similarity=0.050 Sum_probs=69.6
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHH-hHhCCCChHHhHHHHHHHhhcCCCCC---CCCCchhhHhhhHhhhhhHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMRQIEKTIQYLIGSGMDPR---TENSPYLGFIYTSFQERATFISHG 237 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~~~~~li~~G~d~~---~~~~p~~~~vYtsfQE~AT~ish~ 237 (396)
+..-..-+..=..||-+|...|.+.+ .+.|...+. .... .....|.+. ...++...+-...-.|..+..+|.
T Consensus 46 ~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~--~~~~--~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~ 121 (154)
T cd07908 46 YPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYR--SSSS--DKFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYK 121 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch--hhcc--ccCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777789999999999987 444433221 1100 011111111 112444455555667999999999
Q ss_pred HHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016050 238 NTARLAKEHGDMKLAQICGTIASDEKRHETAYTKI 272 (396)
Q Consensus 238 ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 272 (396)
++++. .+|+.++.++..|+.||..|...+.++
T Consensus 122 ~~~~~---~~d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 122 RQAET---IKDPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred HHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88774 679999999999999999999988765
No 14
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=96.38 E-value=0.15 Score=44.69 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=79.6
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHhHhC-CCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLYLSG-RVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTA 240 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsg-rvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 240 (396)
......|...=..||-+|.+.+.+|+.--| ......+. .+....+....+-...=.|..+...|..+.
T Consensus 36 ~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~-----------~~~~~~~~~~~l~~~l~~E~~~~~~y~~~~ 104 (153)
T cd00907 36 LEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLG-----------KLRIGEDVPEMLENDLALEYEAIAALNEAI 104 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCC-----------CCCcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888899999999999995434 33221110 111112444556666667888888999999
Q ss_pred HHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016050 241 RLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 241 rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 277 (396)
++|.+.+|+....++..|.+||..|..+|.+.++.+-
T Consensus 105 ~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~ 141 (153)
T cd00907 105 ALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLID 141 (153)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998899999999999999999999999999998643
No 15
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=96.32 E-value=0.071 Score=44.95 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=85.9
Q ss_pred CCchhHhHHhhcchhhhhhhhHHHHhHHhHhCC-C--ChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHH
Q 016050 160 ASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGR-V--DMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISH 236 (396)
Q Consensus 160 ~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgr-v--Dp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish 236 (396)
....+.+.+......||..|++.+.+|+.-=|. . ++..+.+ +. .|....++...|...---|......+
T Consensus 28 ~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~-----~~---~~~~~~~~~~~l~~~l~~e~~~~~~~ 99 (142)
T PF00210_consen 28 PNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPE-----IP---KPPEWTDPREALEAALEDEKEIIEEY 99 (142)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHH-----HH---SSSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhh-----hh---ccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999965444 2 2332332 11 11111367777888778888899999
Q ss_pred HHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016050 237 GNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 276 (396)
Q Consensus 237 ~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 276 (396)
..+.+.|.+.||+.+..++..+..||..|..+...++..+
T Consensus 100 ~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l 139 (142)
T PF00210_consen 100 RELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNL 139 (142)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888999999999999999999999999988764
No 16
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=96.26 E-value=0.073 Score=53.30 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=95.3
Q ss_pred cccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHH--------HHhhhccchhhHHHHhhhhccCcccCCCCc
Q 016050 91 VEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLV--------GDMITEEALPTYQTMLNTLDGVRDETGASL 162 (396)
Q Consensus 91 v~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv--------~~miTEdnLPtY~~~L~~~fgv~de~g~~~ 162 (396)
....|.|.+ +|+++ .+++|+ +|+++-+..+. ++.++-.||..+-. .+.. .| .
T Consensus 35 ~~~fW~peE-idls~------D~~dw~----~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~~i~----~~~~---~~--~ 94 (311)
T PRK08326 35 NAKFWNPAD-IDFSR------DAEDWE----KLSDEERDYATRLCAQFIAGEEAVTLDIQPLIS----AMAA---EG--R 94 (311)
T ss_pred HHcCCCHHh-cCccc------hHHHHH----hCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hccc---cC--C
Confidence 356799998 77654 345664 37776554432 34444455532211 1110 00 1
Q ss_pred hhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHH------HHHHh-----hcCCCCCCCCCc---hhhHh-hhHh
Q 016050 163 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT------IQYLI-----GSGMDPRTENSP---YLGFI-YTSF 227 (396)
Q Consensus 163 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~------~~~li-----~~G~d~~~~~~p---~~~~v-Ytsf 227 (396)
.+-..+...=..+|++|..+-..|+-.-|.-+. +... .+..+ ....+.....+| +..++ |..+
T Consensus 95 ~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~~--~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~ 172 (311)
T PRK08326 95 LEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTED--LSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHV 172 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 344556677789999999999999843333321 1111 11110 000111111122 23333 6667
Q ss_pred hhhhHHHH-----HHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCC
Q 016050 228 QERATFIS-----HGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 282 (396)
Q Consensus 228 QE~AT~is-----h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 282 (396)
.|---+.+ ..++++. ---|-++++...|.+||.+|-.|...+++.+...+|.
T Consensus 173 iEGi~f~sgF~~~~~~l~~~---~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~ 229 (311)
T PRK08326 173 VEGVLAETGYYAWRKICVTR---GILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDS 229 (311)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 88744222 1234332 2278899999999999999999999999999988885
No 17
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.24 E-value=0.014 Score=49.04 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=47.7
Q ss_pred HhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016050 222 FIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 276 (396)
Q Consensus 222 ~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 276 (396)
|-..+-.|.....+|..+++.++..| |.+++++..||.||.+|..++.++...+
T Consensus 3 L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 3 LEMAIKMELEAAKFYRELAEKAKDEG-PELKELFRRLAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455679999999999999988666 9999999999999999999999999876
No 18
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=96.17 E-value=0.18 Score=49.17 Aligned_cols=161 Identities=19% Similarity=0.174 Sum_probs=96.2
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHH--------HHhhhccch-hhHHHHhhhhccCcccCCCCc
Q 016050 92 EKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLV--------GDMITEEAL-PTYQTMLNTLDGVRDETGASL 162 (396)
Q Consensus 92 ~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv--------~~miTEdnL-PtY~~~L~~~fgv~de~g~~~ 162 (396)
...|.|.+ +| |.....+|.. ||+.-+.++. ++.++-+++ +.. ..... .
T Consensus 28 ~~fW~peE-i~------~~~D~~~~~~----Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i----~~~~~--------~ 84 (281)
T PF00268_consen 28 SNFWTPEE-ID------MSKDIKDWKK----LSEEEREAYKRILAFFAQLDSLVSENLLPNI----MPEIT--------S 84 (281)
T ss_dssp HT---GGG-S-------GGGHHHHHHH----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCS--------S
T ss_pred hCCCCchh-cC------hhhhHHHHHh----CCHHHHHHHHHHHHHHHHHHhHHHhhHHHHH----HHHcC--------H
Confidence 34788887 43 4445666766 7877665543 333333333 322 22221 5
Q ss_pred hhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHH-------------hHHHHHHHhhcCCCCCCCCCchhhHhhhHhhh
Q 016050 163 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQ-------------IEKTIQYLIGSGMDPRTENSPYLGFIYTSFQE 229 (396)
Q Consensus 163 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~-------------lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE 229 (396)
++...+...+..+|+.|..+-..++-.-+ -|+.. +.+ ....+..-++.. .+-...+++-.+-|
T Consensus 85 ~E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~~~~~~~~~~~~~~l~~-k~~~i~~~~~~~--~~~~~~lv~~~~lE 160 (281)
T PF00268_consen 85 PEIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKERDEIFDWVEEDPELQK-KLDWIEKWYEDN--DSLAEKLVASVILE 160 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHSHHHHH-HHHHHHHHHCSS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhhhHHhh-HHHHHHhhchhh--hhHHHHHHHHHHHH
Confidence 67788899999999999999998884433 34432 222 222333344432 12233556777778
Q ss_pred hhHHHH-HHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016050 230 RATFIS-HGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 279 (396)
Q Consensus 230 ~AT~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 279 (396)
.--+.+ +.-+.-+++..-=|-+.++...|.+||.+|..|...+++.+.+.
T Consensus 161 gi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e 211 (281)
T PF00268_consen 161 GILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEE 211 (281)
T ss_dssp HTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 753322 22333344333378899999999999999999999999998865
No 19
>PRK10635 bacterioferritin; Provisional
Probab=95.66 E-value=0.2 Score=45.74 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=83.7
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHH-hHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTA 240 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 240 (396)
...++.|...=..||-+|++.|-+++ .+-|..+...+. ...++ .++...|-..--.|+-+.-.|+...
T Consensus 37 ~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~---------~~~~g--~~v~eml~~dl~~E~~ai~~y~e~i 105 (158)
T PRK10635 37 LMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLG---------KLNIG--EDVEEMLRSDLRLELEGAKDLREAI 105 (158)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---------CCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566676544889999999999999 555555665552 12333 3777778888888999999999999
Q ss_pred HHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016050 241 RLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 276 (396)
Q Consensus 241 rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 276 (396)
++|...+|++-.+++..|-.||..|...+.+.++.+
T Consensus 106 ~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~i 141 (158)
T PRK10635 106 AYADSVHDYVSRDMMIEILADEEGHIDWLETELDLI 141 (158)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999989999999999999999999999999888753
No 20
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=95.36 E-value=0.32 Score=48.66 Aligned_cols=168 Identities=16% Similarity=0.131 Sum_probs=98.1
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHH--------HHhhhccc-hhhHHHHhhhhccCcccCCCCc
Q 016050 92 EKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLV--------GDMITEEA-LPTYQTMLNTLDGVRDETGASL 162 (396)
Q Consensus 92 ~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv--------~~miTEdn-LPtY~~~L~~~fgv~de~g~~~ 162 (396)
..-|.|.++ | |...+.+|+ +|+++-+.++. ++.++-++ +|.+...+ ..
T Consensus 31 ~~fW~peEi-~------~s~D~~dw~----~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~------------~~ 87 (324)
T PRK09614 31 ANFWLPEEV-P------LSNDLKDWK----KLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNLMPDI------------TT 87 (324)
T ss_pred hCCCCCccc-c------ccchHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHC------------Cc
Confidence 358999994 4 333455664 47776554432 34444444 44443332 14
Q ss_pred hhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHH--hHH---------HHHHHhhcCCCCCCCCCchhhHhhhHhhhhh
Q 016050 163 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQ--IEK---------TIQYLIGSGMDPRTENSPYLGFIYTSFQERA 231 (396)
Q Consensus 163 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~--lE~---------~~~~li~~G~d~~~~~~p~~~~vYtsfQE~A 231 (396)
++...+...+.++|+.|+.+-...+-.-+ .+.+. +.. .+...+..-|+....+.-...+++..+.|.-
T Consensus 88 ~E~~~~~~~q~~~E~iH~~sYs~il~tl~-~~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~lEgi 166 (324)
T PRK09614 88 PEEEAVLANIAFMEAVHAKSYSYIFSTLC-SPEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVASVFLEGF 166 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56778999999999999998777773211 12222 111 0111222222221111334455666667754
Q ss_pred HHHH-HHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCc
Q 016050 232 TFIS-HGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDG 283 (396)
Q Consensus 232 T~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 283 (396)
-+-+ ..-+--+++.--=|-++++...|++||.+|-.|...++..++...|..
T Consensus 167 ~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~ 219 (324)
T PRK09614 167 LFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPEL 219 (324)
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHh
Confidence 3322 111222332222567899999999999999999999999999877764
No 21
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=95.27 E-value=0.32 Score=44.38 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=47.1
Q ss_pred CchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 217 SPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 217 ~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
++..-+-+.--=|.....-|.++.+. +.||.+..++.+|..||..|..-|.+.++.
T Consensus 99 d~~~~L~~ni~aE~~Ai~~Y~~l~~~---~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 99 NLVADLRSNIAAESRARLTYERLYEM---TDDPGVKDTLSFLLVREIVHQNAFGKALES 154 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566667777788888889977775 669999999999999999999999998875
No 22
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=95.14 E-value=0.9 Score=46.70 Aligned_cols=167 Identities=15% Similarity=0.162 Sum_probs=96.5
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHH--------HHhhhccchh-hHHHHhhhhccCcccCCCCc
Q 016050 92 EKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLV--------GDMITEEALP-TYQTMLNTLDGVRDETGASL 162 (396)
Q Consensus 92 ~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv--------~~miTEdnLP-tY~~~L~~~fgv~de~g~~~ 162 (396)
...|.|.+ +| |...+++|+ ...+|+|+-+.++. ++.++-+|+. .+. .++. .
T Consensus 68 ~nfW~peE-I~------ls~Di~dw~-~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~~l~----~~i~--------~ 127 (369)
T PRK07209 68 ANHWMPQE-VN------MSRDIALWK-SPNGLTEDERRIVKRNLGFFSTADSLVANNIVLAIY----RHIT--------N 127 (369)
T ss_pred hCCCCchh-cC------ccccHHHHc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHcC--------H
Confidence 45799999 43 333456663 12357777655443 3444445542 222 2221 4
Q ss_pred hhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhH----------HHHHHH---hhc----CCCCCCC---CCchhhH
Q 016050 163 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIE----------KTIQYL---IGS----GMDPRTE---NSPYLGF 222 (396)
Q Consensus 163 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE----------~~~~~l---i~~----G~d~~~~---~~p~~~~ 222 (396)
++...++..+.++|+.|+.+-...+-.-+ .|+..+. +....+ +.. +++..+. .+.+..+
T Consensus 128 pE~r~~l~~q~~~E~iHs~sYs~ildtl~-~~~~e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (369)
T PRK07209 128 PECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNL 206 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence 56678899999999999998766552212 3443311 111111 111 1221111 1234556
Q ss_pred h-hhHhhhhhHH----HHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCC
Q 016050 223 I-YTSFQERATF----ISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 282 (396)
Q Consensus 223 v-YtsfQE~AT~----ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 282 (396)
| |.+|.|-.-+ .+--++++ .--=|-++++...|++||.+|-.|+..++..+...+|+
T Consensus 207 va~~~ilEGi~FysgFa~~~~l~r---~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~ 268 (369)
T PRK07209 207 IAFYCIMEGIFFYVGFTQILSLGR---QNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPH 268 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 5 4566675433 22223433 22256789999999999999999999999999887775
No 23
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.41 Score=44.63 Aligned_cols=139 Identities=18% Similarity=0.061 Sum_probs=93.8
Q ss_pred HHHHHHHhhhc-cchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhH-hCCC-ChHHhHHHHHH
Q 016050 128 FVVLVGDMITE-EALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYL-SGRV-DMRQIEKTIQY 204 (396)
Q Consensus 128 ~v~Lv~~miTE-dnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~l-sgrv-Dp~~lE~~~~~ 204 (396)
.-+|-.+.-.| ++.=-|. .++.+.. +..-..-+..=..||-+|-+.+.+.++- +++- .-...+.+...
T Consensus 26 ~e~L~~Ai~~E~eA~~fY~-~lae~~~--------~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~ 96 (176)
T COG1633 26 EELLAIAIRGELEAIKFYE-ELAERIE--------DEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIES 96 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcC--------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhh
Confidence 34455555556 4444454 4444442 4456677778889999999999998843 2221 11112222222
Q ss_pred -HhhcCCC---CCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016050 205 -LIGSGMD---PRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 278 (396)
Q Consensus 205 -li~~G~d---~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 278 (396)
.+..+.. .....+....+-+...+|..|-.+|.-+... ..++..+.+...|+.||..|+..+....+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~---~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~~ 171 (176)
T COG1633 97 EILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDE---LVNEEAKKLFKTIADDEKGHASGLLSLYNRLTS 171 (176)
T ss_pred hhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2232333 2223467889999999999999999966664 669999999999999999999999999887654
No 24
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.93 Score=46.65 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=106.0
Q ss_pred cccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHHHH--------hhhccchhh-HHHHhhhhccCcccCCCC
Q 016050 91 VEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGD--------MITEEALPT-YQTMLNTLDGVRDETGAS 161 (396)
Q Consensus 91 v~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv~~--------miTEdnLPt-Y~~~L~~~fgv~de~g~~ 161 (396)
.+.-|-|.+ ||-+. ...+|+ +|+++-+.++..+ .++=.++.- +-.+ ..
T Consensus 45 ~~nFW~Pee-I~ls~------D~~dw~----~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~~~~~~~~------------v~ 101 (348)
T COG0208 45 TANFWLPEE-IDLSN------DIKDWK----KLSDDEKDLIIRVLAFLTLLDSIQANNGVPALSPL------------VT 101 (348)
T ss_pred HhcCCCchh-cCccc------cHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH------------cc
Confidence 356899999 88754 234666 5888766554432 222222221 2111 12
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHH-hHhCCCChHH-----------hHHHHHHHhhcCCCCCCCCCc--------hhh
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMRQ-----------IEKTIQYLIGSGMDPRTENSP--------YLG 221 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~-----------lE~~~~~li~~G~d~~~~~~p--------~~~ 221 (396)
.+.-..|+..|..+|+=|+..=.--+ .+..--+... +-+ +..-|..-|+- .+.+| +..
T Consensus 102 ~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~-k~~~i~~~y~~-~~~~~~~~~~~~~~~~ 179 (348)
T COG0208 102 TPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQE-KAEIILRYYDD-LGDDPDDPLEEFLLKL 179 (348)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhccHHHHH-HHHHHHHHHHh-ccCCcccchHHHHHHH
Confidence 45667899999999999997644333 1111111111 111 12222333332 22344 778
Q ss_pred HhhhHhhhhh----HHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHH
Q 016050 222 FIYTSFQERA----TFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMM 292 (396)
Q Consensus 222 ~vYtsfQE~A----T~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm 292 (396)
.+|.++-|-- -+.+.-++++..| =|-.++|.+.|.+||.+|-.++..++.+++...|+.--..+.+.+
T Consensus 180 ~v~~~~lEgi~FYsGFa~~~~l~~r~k---M~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~ 251 (348)
T COG0208 180 VVASVILEGILFYSGFAYPLYLARRGK---MPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKDEI 251 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhHHHHHHH
Confidence 8888888753 2555667777644 567899999999999999999999999999999985333444333
No 25
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=94.83 E-value=0.054 Score=46.79 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016050 228 QERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 276 (396)
Q Consensus 228 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 276 (396)
-|.-...+|+++++. ..+|.+++++..||.+|.+|+.+|.++....
T Consensus 9 ~E~~~~~~Y~~la~~---~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 9 DEITEAAIYRKLAKR---EKDPENREILLKLAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467778899999886 4499999999999999999999999998764
No 26
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=94.81 E-value=0.39 Score=41.74 Aligned_cols=107 Identities=16% Similarity=0.073 Sum_probs=73.6
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCC----CCCCCchhhHhhhHhhhhhHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDP----RTENSPYLGFIYTSFQERATFISHG 237 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~----~~~~~p~~~~vYtsfQE~AT~ish~ 237 (396)
+.....|+..=..||..|.+.+..++..-|..-...... +...+|+.+ ....+....+-..-=.|......|+
T Consensus 37 f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~ 113 (148)
T cd01052 37 GEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKD---WYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYK 113 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHH---HHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888999999999999996545442222221 122222111 1112333334444446777777888
Q ss_pred HHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016050 238 NTARLAKEHGDMKLAQICGTIASDEKRHETAYTKI 272 (396)
Q Consensus 238 ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 272 (396)
++.++|.. +|++...++..|-+||..|...|..+
T Consensus 114 ~~~~~a~~-~D~~t~~ll~~~l~de~~h~~~~~~~ 147 (148)
T cd01052 114 ELCDMTHG-KDPVTYDLALAILNEEIEHEEDLEEL 147 (148)
T ss_pred HHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888765 89999999999999999999998876
No 27
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=94.74 E-value=0.92 Score=45.78 Aligned_cols=163 Identities=17% Similarity=0.099 Sum_probs=93.2
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHHH--------Hhhhccch-hhHHHHhhhhccCcccCCCCch
Q 016050 93 KCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVG--------DMITEEAL-PTYQTMLNTLDGVRDETGASLT 163 (396)
Q Consensus 93 ~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv~--------~miTEdnL-PtY~~~L~~~fgv~de~g~~~~ 163 (396)
.-|.|.++ | |...+.+|+ +|+++-+.++.- +.++-+++ +.+... + ..+
T Consensus 42 ~fW~peEi-~------~s~D~~dw~----~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~----~--------~~p 98 (330)
T PTZ00211 42 SFWTAEEI-D------LGNDLKDWE----KLNDGERHFIKHVLAFFAASDGIVLENLAQRFMRE----V--------QVP 98 (330)
T ss_pred cCCChhhc-c------hhhhHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C--------CHH
Confidence 58999994 3 444566775 488776655443 33333333 222211 1 135
Q ss_pred hHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHh-------------HHHHHHHhhcCCCCCCCCCchhhHhhhHhhhh
Q 016050 164 SWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQI-------------EKTIQYLIGSGMDPRTENSPYLGFIYTSFQER 230 (396)
Q Consensus 164 ~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~l-------------E~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~ 230 (396)
+...+...|.+.|+.|+..-.-.+-.-+ -|+... -+..... ..-++ ...+++..++.-++.|.
T Consensus 99 E~~~~~~~q~~~E~iHs~sYs~il~tl~-~~~~~~~~~f~~~~~~p~i~~K~~~~-~~~~~--~~~~~~~~lv~~~~lEg 174 (330)
T PTZ00211 99 EARCFYGFQIAMENIHSETYSLLIDTYI-TDEEEKDRLFHAIETIPAIKKKAEWA-AKWIN--SSNSFAERLVAFAAVEG 174 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCHHHHHHHHHH-HHHHh--cchHHHHHHHHHHHhhh
Confidence 6678899999999999987654442111 133221 1111111 11122 12255666665556775
Q ss_pred hHHHH-HHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCC
Q 016050 231 ATFIS-HGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 282 (396)
Q Consensus 231 AT~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 282 (396)
--+.+ ...+--+++.--=|-++++...|++||.+|-.|...++..+++..|.
T Consensus 175 i~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~ 227 (330)
T PTZ00211 175 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPR 227 (330)
T ss_pred HHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCH
Confidence 43321 22222333322256689999999999999999999999999865543
No 28
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.71 E-value=0.79 Score=47.70 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=94.8
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHHH--------Hhhhccch-hhHHHHhhhhccCcccCCCCch
Q 016050 93 KCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVG--------DMITEEAL-PTYQTMLNTLDGVRDETGASLT 163 (396)
Q Consensus 93 ~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv~--------~miTEdnL-PtY~~~L~~~fgv~de~g~~~~ 163 (396)
.-|.|.+ +| |...+.+|+. ..|+|+-+.++.- +.++-+++ +.+... + ..+
T Consensus 118 ~fW~peE-i~------ls~D~~dw~~--~~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~~~----~--------~~p 176 (410)
T PRK12759 118 AHWIEDE-ID------LSEDVTDWKN--GKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPL----F--------KNN 176 (410)
T ss_pred cCCCccc-cc------hhhhHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh----c--------CHH
Confidence 4788877 43 3445667751 4688887665543 33333332 233222 2 145
Q ss_pred hHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhH---------HHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHH-
Q 016050 164 SWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIE---------KTIQYLIGSGMDPRTENSPYLGFIYTSFQERATF- 233 (396)
Q Consensus 164 ~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE---------~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~- 233 (396)
+-..+...|+++|+.|+.+-...+-.=+. |..... +..+.... .++...+.-+..++...|.|-.-+
T Consensus 177 E~~~~~~~q~~~E~iHsesYs~il~tl~~-~~~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~~~~~lv~~~~lEgi~Fy 253 (410)
T PRK12759 177 EIRNMLGSFAAREGIHQRAYALLNDTLGL-PDSEYHAFLEYKAMTDKIDFMMD--ADPTTRRGLGLCLAKTVFNEGVALF 253 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHhhHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999986665521111 121111 11112111 222211122345666677776322
Q ss_pred ---HHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCC
Q 016050 234 ---ISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 282 (396)
Q Consensus 234 ---ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 282 (396)
.+--++++. --=|-++++...|++||..|-.|...++..+++..|+
T Consensus 254 s~Fa~~~~l~~~---g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~ 302 (410)
T PRK12759 254 ASFAMLLNFQRF---GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPY 302 (410)
T ss_pred HHHHHHHHHHhc---CCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 222233332 1257789999999999999999999999999988876
No 29
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=93.96 E-value=1.5 Score=39.10 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=79.1
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHhHhCCC-ChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRV-DMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTA 240 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrv-Dp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 240 (396)
-...+.|...=..||..|++-|..|+.--|.. +... +. . |....+....|-..-=.|......|+.+.
T Consensus 37 ~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~--------i~-~--~~~~~~~~e~l~~~l~~E~~~~~~~~e~i 105 (157)
T TIGR00754 37 LKELADHEYHESIDEMKHADEIIERILFLEGLPNLQD--------LG-K--LRIGETVREMLEADLALELDVLNRLKEAI 105 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCc--------CC-C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677787777789999999999999654443 3111 11 1 11123555556666667888888899898
Q ss_pred HHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016050 241 RLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 241 rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 277 (396)
++|.+.||+....++..|.+||..|..++...++.+-
T Consensus 106 ~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~~~ 142 (157)
T TIGR00754 106 AYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLELID 142 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888899999999999999999999999999987643
No 30
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=93.89 E-value=0.36 Score=42.01 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=68.4
Q ss_pred hhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH------hhCCCchHHHHHHHHHhccCCCcc
Q 016050 228 QERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF------EIDPDGTIVSFADMMRKKISMPAH 301 (396)
Q Consensus 228 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l------e~dPd~tm~Aia~mm~~~i~MP~~ 301 (396)
-|......|...++.|+.-|-+.++..+..+|.+|..|..-|.+.+..+- ..+.+.+...|...+.
T Consensus 12 ~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~-------- 83 (134)
T cd01041 12 GESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIA-------- 83 (134)
T ss_pred hHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHH--------
Confidence 46666777999999999999999999999999999999999988876531 1122333334444333
Q ss_pred cCCCCCc---chhhhHHHHHHHHhCCCChhhH-HHHHH
Q 016050 302 LMYDGRD---DNLFEHFSAVAQRLGVYTAKDY-ADILE 335 (396)
Q Consensus 302 ~m~dg~~---~~lf~~~s~vaqr~GvYt~~dy-~dIl~ 335 (396)
+.. ...|..+..+|.+.|-++..+. ..|++
T Consensus 84 ----~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~ 117 (134)
T cd01041 84 ----GETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAE 117 (134)
T ss_pred ----hhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222 1567888888999998887773 33543
No 31
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=93.89 E-value=2.6 Score=42.53 Aligned_cols=158 Identities=11% Similarity=0.016 Sum_probs=89.2
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHHHHh---------hhccchhhHHHHhhhhccCcccCCCCc
Q 016050 92 EKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDM---------ITEEALPTYQTMLNTLDGVRDETGASL 162 (396)
Q Consensus 92 ~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv~~m---------iTEdnLPtY~~~L~~~fgv~de~g~~~ 162 (396)
..-|.|.+ +|- ...+++|+ .|+++-+.++.-.+ .++...+... ..+ ..
T Consensus 31 ~~fW~peE-I~l------s~D~~dw~----~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~------~~~------~~ 87 (322)
T PRK13967 31 GNFWLPEK-IPL------SNDLASWQ----TLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMI------DDA------VT 87 (322)
T ss_pred hCCCCccc-cCc------hhhHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------Hhc------CC
Confidence 45899988 553 34566775 38888776554443 1222222111 011 14
Q ss_pred hhHhHHhhcchhhhhhhhHHHHhHH-hHhCCCCh--HHhHHH------HH---HHhhcCCCCCCCCCchhhHhhhHhhhh
Q 016050 163 TSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDM--RQIEKT------IQ---YLIGSGMDPRTENSPYLGFIYTSFQER 230 (396)
Q Consensus 163 ~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp--~~lE~~------~~---~li~~G~d~~~~~~p~~~~vYtsfQE~ 230 (396)
++-..+...|..+|+.|+.+-..-+ .+ +. +. ..+... ++ ..+..-|+. .+.+..++...+.|-
T Consensus 88 ~e~~~~l~~~~~~E~iHs~sYs~il~tl-~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~---~~~~~~~v~~~~lEg 162 (322)
T PRK13967 88 PHEEAVLTNMAFMESVHAKSYSSIFSTL-CS-TKQIDDAFDWSEQNPYLQRKAQIIVDYYRG---DDALKRKASSVMLES 162 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-ChhHHHHHHHHhcCHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHH
Confidence 5567899999999999999866555 22 11 11 111111 11 223333432 255666777777776
Q ss_pred hHH-HHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016050 231 ATF-ISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 231 AT~-ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 277 (396)
.-+ ++....--+++.--=|-++++...|.+||..|-.+....+...+
T Consensus 163 i~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 163 FLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 331 11222222222222567899999999999999999987664444
No 32
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=93.74 E-value=0.6 Score=40.48 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=67.9
Q ss_pred hhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHHhccCCCcccCCCCC
Q 016050 228 QERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKISMPAHLMYDGR 307 (396)
Q Consensus 228 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg~ 307 (396)
-|......|-..++.|+..|.|-++.....+|..|..|...|.+++.. -|..+...|...+. +.
T Consensus 12 ~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~----i~~~~~~~le~a~~------------~E 75 (123)
T cd01046 12 GETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGK----VSEDTKENLEMMLE------------GE 75 (123)
T ss_pred hHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHH------------hH
Confidence 466667789999999999999999999999999999999999997643 23566666766665 22
Q ss_pred c--chhhhHHHHHHHHhCCCChhh
Q 016050 308 D--DNLFEHFSAVAQRLGVYTAKD 329 (396)
Q Consensus 308 ~--~~lf~~~s~vaqr~GvYt~~d 329 (396)
. ...|..+..+|.+.|-|+..+
T Consensus 76 ~~~~~~~~~~~~~A~~egd~~~~~ 99 (123)
T cd01046 76 AGANEGKKDAATEAKAEGLDEAHD 99 (123)
T ss_pred HHHHHhHHHHHHHHHHcCCHHHHH
Confidence 2 133778899999999888776
No 33
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=93.74 E-value=0.36 Score=43.48 Aligned_cols=110 Identities=23% Similarity=0.234 Sum_probs=88.1
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHH-hHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTA 240 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 240 (396)
.+.++.|.+.=..||..|++.|-+|+ ..-|.++...+..-. +....++...|-..-=.|.--...+..+.
T Consensus 36 l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~---------~~~~~~~~e~l~~al~~E~~vt~~~~~l~ 106 (161)
T cd01056 36 LPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPE---------KDEWGSGLEALELALDLEKLVNQSLLDLH 106 (161)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCC---------CcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999 455555666544311 11224667777777778888888888899
Q ss_pred HHHHhhCCHHHHHHHhH-hhhhhhHHHHHHHHHHHHHHhhC
Q 016050 241 RLAKEHGDMKLAQICGT-IASDEKRHETAYTKIVEKLFEID 280 (396)
Q Consensus 241 rla~~~gDPvLa~I~~~-IAaDE~RH~~~Y~~iv~~~le~d 280 (396)
++|...+|++....+.. +=.++..|.+.+.+++..+=.+.
T Consensus 107 ~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~~~~ 147 (161)
T cd01056 107 KLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLKRVG 147 (161)
T ss_pred HHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999997 99999999999999998765443
No 34
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=93.70 E-value=3.5 Score=41.93 Aligned_cols=165 Identities=10% Similarity=0.092 Sum_probs=84.5
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHHHHhhhccchhhHHHHhhhhccCcccCCCCchhHhHHhhc
Q 016050 92 EKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRA 171 (396)
Q Consensus 92 ~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv~~miTEdnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~ 171 (396)
..-|.|.+ +| |...+++|. .|+++-+..+.-.+--=-.+.+.+......--. ..+. ..+-..+...
T Consensus 44 ~nfW~peE-I~------ls~D~~dw~----~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~--~e~~-~~~e~~~l~~ 109 (335)
T PRK13965 44 QNFWLPEK-VP------VSNDLNSWR----SLGEDWQQLITRTFTGLTLLDTVQATVGDVAQI--PHSQ-TDHEQVIYTN 109 (335)
T ss_pred HcCCCccc-cC------chhhHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhc--cccc-chHHHHHHHH
Confidence 35899988 44 344566774 388887665544332101222222211100000 0011 1233567799
Q ss_pred chhhhhhhhH----HHHhHH--------hHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHH-HHH
Q 016050 172 WTAEENRHGD----LLNKYL--------YLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFIS-HGN 238 (396)
Q Consensus 172 WTAEEnRHG~----aLr~YL--------~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~is-h~n 238 (396)
+..+|+-|+. ++..++ +-+-. +-..+-+.... +..-++. .+++..+++.++.|-.-+-+ ...
T Consensus 110 q~~~E~IHs~sYs~il~tl~~~~~~~~~f~~~~-~~p~l~~K~~~-i~~~~~~---~~~~~~~va~~~lEGi~FysgFa~ 184 (335)
T PRK13965 110 FAFMVAIHARSYGTIFSTLCSSEQIEEAHEWVV-STESLQRRARV-LIPYYTG---DDPLKSKVAAAMMPGFLLYGGFYL 184 (335)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh-cCHHHHHHHHH-HHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 444442 11101 11112222222 2223332 25677777777777543322 111
Q ss_pred HHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 239 TARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 239 tarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
+--+++.--=|-++++...|.+||..|-.|-.-++..
T Consensus 185 ~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~ 221 (335)
T PRK13965 185 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQ 221 (335)
T ss_pred HHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2223332225678999999999999999864444433
No 35
>PF13668 Ferritin_2: Ferritin-like domain
Probab=93.67 E-value=1 Score=39.07 Aligned_cols=98 Identities=18% Similarity=0.090 Sum_probs=66.8
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHhHhCCCC--hHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVD--MRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNT 239 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvD--p~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nt 239 (396)
++.....+..=...|..|-..|++-+- |.-. +..+.- .+++.. ++...+.....-|..-...|...
T Consensus 37 ~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~~~~~~~--------~~~~~~--~~~~~L~~A~~~E~~~~~~Y~g~ 104 (137)
T PF13668_consen 37 DPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVPPPAYDF--------PFDPFT--DDASFLRLAYTLEDVGVSAYKGA 104 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCcccc--------ccCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555567888899999999999996 2221 111100 344443 44444444444566666667766
Q ss_pred HHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016050 240 ARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVE 274 (396)
Q Consensus 240 arla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 274 (396)
+.. ..+|.+.+++..|+++|.+|...++.++.
T Consensus 105 ~~~---~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 105 APQ---IEDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred HHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 665 56999999999999999999999998764
No 36
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=92.91 E-value=4 Score=39.28 Aligned_cols=145 Identities=18% Similarity=0.101 Sum_probs=101.6
Q ss_pred HHHHHHHHhhhccchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHH-hHh---CCCC---hHHhH
Q 016050 127 YFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL-YLS---GRVD---MRQIE 199 (396)
Q Consensus 127 ~~v~Lv~~miTEdnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL-~ls---grvD---p~~lE 199 (396)
+...+..-...|-++-....++...-. .+.|..-.---+..|.||...+.-++ .++ ...+ -...+
T Consensus 75 l~~~~~~~~~~E~ga~~~~a~~~r~~~--------~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~k~~w~ 146 (233)
T PF02332_consen 75 LKRHLGPLRHAEYGAQMASAYIARFAP--------GTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAAKEAWL 146 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-S--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCTHHHHH
T ss_pred HHHHcCCcchHHHHHHHHHHHHHhhcC--------cHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHHHHHHh
Confidence 345556666778777777777755543 45666666678889999999888777 332 2333 11111
Q ss_pred -----HHHHHHhhcCCCCCCCCCchhhHhhhHhh-hh-hHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016050 200 -----KTIQYLIGSGMDPRTENSPYLGFIYTSFQ-ER-ATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKI 272 (396)
Q Consensus 200 -----~~~~~li~~G~d~~~~~~p~~~~vYtsfQ-E~-AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 272 (396)
+-...++..-+-. .++...++...|+ |. -|...+..+.+.|...||..+..|+.-|-.||.||..-=..+
T Consensus 147 ~~p~wq~~R~~vE~~~~~---~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~al 223 (233)
T PF02332_consen 147 NDPAWQPLRRLVEDLLVT---YDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGDAL 223 (233)
T ss_dssp HSHHHHHHHHHHHHHTTS---SSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123334333332 2677777777766 43 477888889999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 016050 273 VEKLFEIDPD 282 (396)
Q Consensus 273 v~~~le~dPd 282 (396)
|+-+++-+|+
T Consensus 224 ~~~~~~~~~~ 233 (233)
T PF02332_consen 224 FKMALEDDPN 233 (233)
T ss_dssp HHHHHCTTTH
T ss_pred HHHHHhCCCC
Confidence 9988887764
No 37
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=92.64 E-value=11 Score=38.28 Aligned_cols=172 Identities=13% Similarity=0.075 Sum_probs=97.5
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHHHHhhhccchhhHHHH-hh-hhccCcccCCCCchhHhHHh
Q 016050 92 EKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTM-LN-TLDGVRDETGASLTSWAIWT 169 (396)
Q Consensus 92 ~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv~~miTEdnLPtY~~~-L~-~~fgv~de~g~~~~~W~~Wv 169 (396)
..-|.|.+ +|- ...+++|+ .||++-+.++...+--=-.+.+.+.. +. .+... ...++-..+.
T Consensus 33 ~nfW~peE-i~l------~~D~~dw~----~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~~~-----~~~pe~~~~~ 96 (324)
T PRK13966 33 GNFWLPEK-VPV------SNDIPSWG----TLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPD-----ALTPHEEAVL 96 (324)
T ss_pred hCCCCccc-cCc------cchHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh-----cCCHHHHHHH
Confidence 45799988 543 33466774 38888776655433222233333332 11 11111 1145557889
Q ss_pred hcchhhhhhhhHHHHhHH-hHhCC------C----ChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHH-HH
Q 016050 170 RAWTAEENRHGDLLNKYL-YLSGR------V----DMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFIS-HG 237 (396)
Q Consensus 170 ~~WTAEEnRHG~aLr~YL-~lsgr------v----Dp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~is-h~ 237 (396)
..|.++|+-|+.+-..-+ .+... + +-..+.+..+ .+..-|+. .+++..+++-++.|..-+-+ ..
T Consensus 97 ~~q~~~E~IHsesYs~il~tl~~~~~~~~~f~~~~~~~~l~~K~~-~i~~~~~~---~~~~~~~va~~~lEgi~FysgF~ 172 (324)
T PRK13966 97 TNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAE-IVLQYYRG---DEPLKRKVASTLLESFLFYSGFY 172 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhcCHHHHHHHH-HHHHHhcC---ChHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999998754333 11110 0 0011222222 22223443 24677788888888762221 11
Q ss_pred HHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCc
Q 016050 238 NTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDG 283 (396)
Q Consensus 238 ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 283 (396)
..--++++..=+-++++...|.+||..|-.|...++...+..-|+.
T Consensus 173 ~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~ 218 (324)
T PRK13966 173 LPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDV 218 (324)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCChh
Confidence 1112233334567999999999999999999999998776655553
No 38
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=91.95 E-value=0.44 Score=39.73 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=42.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016050 227 FQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 227 fQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 277 (396)
-.|.....+|...++. .++|.++.++..||.||.+|...+..++..+-
T Consensus 8 ~~E~~~~~~Y~~~a~~---~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 8 KMEEEAAEFYLELAEK---AKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHhH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3688889999977775 67999999999999999999999999998865
No 39
>PLN02492 ribonucleoside-diphosphate reductase
Probab=91.29 E-value=4.8 Score=40.52 Aligned_cols=163 Identities=17% Similarity=0.080 Sum_probs=90.0
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHH--------HHhhhccchh-hHHHHhhhhccCcccCCCCc
Q 016050 92 EKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLV--------GDMITEEALP-TYQTMLNTLDGVRDETGASL 162 (396)
Q Consensus 92 ~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv--------~~miTEdnLP-tY~~~L~~~fgv~de~g~~~ 162 (396)
..-|.|.++ | |...+.+|+. |+++-+.++. ++.++-+++. .+. ..+ ..
T Consensus 30 ~~fW~peEi-~------ls~D~~dw~~----Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~~----~~~--------~~ 86 (324)
T PLN02492 30 ASFWTAEEV-D------LSADLKDWEK----LTDDERHFISHVLAFFAASDGIVLENLAARFM----KEV--------QV 86 (324)
T ss_pred HcCCChhhc-C------hhhhHHHHHh----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHC--------CH
Confidence 358999994 3 3334556643 7776554432 3333333432 222 122 14
Q ss_pred hhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhH-------------HHHHHHhhcCCCCCCCCCchhhHhhhHhhh
Q 016050 163 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIE-------------KTIQYLIGSGMDPRTENSPYLGFIYTSFQE 229 (396)
Q Consensus 163 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE-------------~~~~~li~~G~d~~~~~~p~~~~vYtsfQE 229 (396)
++...+...+.+.|+-|+.+-...+-.-+ -|+...+ +....+. ++... ..+.+..++.-.+.|
T Consensus 87 ~E~~~~~~~q~~~E~iH~~sYs~i~~tl~-~d~~~~~~~f~~~~~~p~l~~K~~~~~--~~~~~-~~~~~~~lva~~~lE 162 (324)
T PLN02492 87 PEARAFYGFQIAIENIHSEMYSLLLDTYI-KDPKEKDRLFNAIETIPCVAKKADWAL--RWIDS-SASFAERLVAFACVE 162 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCHHHHHHHHHHH--HHHhh-hHHHHHHHHHHHhhh
Confidence 56678899999999999987654442111 1343211 1111111 12221 124455565444566
Q ss_pred hhHHHH-HHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC
Q 016050 230 RATFIS-HGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDP 281 (396)
Q Consensus 230 ~AT~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP 281 (396)
---+.+ +..+--+++.--=|-++++...|++||.+|-.+...++..+.+.-+
T Consensus 163 gi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~ 215 (324)
T PLN02492 163 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLS 215 (324)
T ss_pred HHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 532211 2222222322225678999999999999999999999998885433
No 40
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=90.76 E-value=0.89 Score=35.97 Aligned_cols=54 Identities=30% Similarity=0.260 Sum_probs=43.5
Q ss_pred hHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCC
Q 016050 225 TSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 282 (396)
Q Consensus 225 tsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 282 (396)
...-|......|...+..+ .+|.+++++..++.||.+|...+.+++..+- .+|.
T Consensus 6 ~~~~E~~a~~~y~~~~~~~---~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g-~~~~ 59 (130)
T cd00657 6 ALAGEYAAIIAYGQLAARA---PDPDLKDELLEIADEERRHADALAERLRELG-GTPP 59 (130)
T ss_pred HHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence 3446777888888777764 4999999999999999999999999997753 3443
No 41
>PRK10304 ferritin; Provisional
Probab=90.15 E-value=6.7 Score=36.02 Aligned_cols=104 Identities=17% Similarity=0.037 Sum_probs=78.5
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHhHh-CCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLYLS-GRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTA 240 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~ls-grvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 240 (396)
...++.|.+.=..||-.|+..|-+|+... |++....+.. .+....++...|-..-=+|..-..++.++.
T Consensus 36 l~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~----------p~~~~~s~~e~~~~~l~~E~~vt~~i~~l~ 105 (165)
T PRK10304 36 FEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVES----------PFAEYSSLDELFQETYKHEQLITQKINELA 105 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCC----------CccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999553 4444333221 011123666666666668888888999999
Q ss_pred HHHHhhCCHHHHHHHhHhhhh---hhHHHHHHHHHHHH
Q 016050 241 RLAKEHGDMKLAQICGTIASD---EKRHETAYTKIVEK 275 (396)
Q Consensus 241 rla~~~gDPvLa~I~~~IAaD---E~RH~~~Y~~iv~~ 275 (396)
++|.+.+|++...++.-+-.+ |..|....-.-++.
T Consensus 106 ~~A~~~~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~ 143 (165)
T PRK10304 106 HAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSL 143 (165)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 77777665555543
No 42
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=89.97 E-value=1.8 Score=40.27 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHHhccCCCcccCCCC---C
Q 016050 231 ATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKISMPAHLMYDG---R 307 (396)
Q Consensus 231 AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg---~ 307 (396)
--..-|.-.|+.|++-|.|.++.+...||-+|..|..-+.+++.++. .-...+..-+..++. | .
T Consensus 18 ~a~~rY~~~A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~-~~~~~~~eNl~~aie------------GE~~e 84 (166)
T COG1592 18 MAVMRYLIFAKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLL-LVLGDTRENLEEAIE------------GETYE 84 (166)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccHHHHHHHHHc------------cchHH
Confidence 33445777888888999999999999999999999999999999877 222233334444443 3 2
Q ss_pred cchhhhHHHHHHHHhC
Q 016050 308 DDNLFEHFSAVAQRLG 323 (396)
Q Consensus 308 ~~~lf~~~s~vaqr~G 323 (396)
....|..|+.+++.-|
T Consensus 85 ~~emyp~~ae~A~~~g 100 (166)
T COG1592 85 ITEMYPVFAEVAEEEG 100 (166)
T ss_pred HHHhChHHHHHHHHcC
Confidence 2355666777777776
No 43
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=89.69 E-value=7.1 Score=38.57 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=44.9
Q ss_pred HhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016050 244 KEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMR 293 (396)
Q Consensus 244 ~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 293 (396)
+..||...+.|+.+|-.||..|-.+=.+-+..+-+......+..+..+++
T Consensus 176 ~~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~~~~p~~~f~~lv~ 225 (253)
T PF04305_consen 176 RSAGDEESAAILEIILRDEIGHVAIGNRWFRYLCEQRGLDPWETFRELVR 225 (253)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHHHHHHHHHH
Confidence 45899999999999999999999998888888888888878888999995
No 44
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=88.81 E-value=23 Score=38.00 Aligned_cols=138 Identities=21% Similarity=0.121 Sum_probs=83.6
Q ss_pred HHhhhccchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHH-hHh---CCCChHH--h-H----HH
Q 016050 133 GDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL-YLS---GRVDMRQ--I-E----KT 201 (396)
Q Consensus 133 ~~miTEdnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL-~ls---grvDp~~--l-E----~~ 201 (396)
+-...|-+|=.-+.++.+... ...+....---+.-|.||+...--|. ++. ..+|... . + ..
T Consensus 85 a~~~~Ey~a~~~~a~~~R~a~--------s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~~~~~~~~~~~~ 156 (465)
T cd01057 85 AITPGEYAAVRGMAMLGRFAP--------AAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQKAFHGNWYAGA 156 (465)
T ss_pred cccHHHHHHHHHHHHHHhhcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHhhCcHHHH
Confidence 344555555555555543332 23455566666777888887654444 222 2333321 0 0 01
Q ss_pred HHHHhhcCCCCCCCCCchhhHhhhHhh-hh-hHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh
Q 016050 202 IQYLIGSGMDPRTENSPYLGFIYTSFQ-ER-ATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI 279 (396)
Q Consensus 202 ~~~li~~G~d~~~~~~p~~~~vYtsfQ-E~-AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~ 279 (396)
....+.+.|-. .++...+++..|+ |. -|...-..+++.|...||.++..|..-|-+||.||..-=...| .++..
T Consensus 157 ~R~~~ed~~~t---~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD~~tptv~~S~QsDe~Rh~~~g~~ll-~~l~~ 232 (465)
T cd01057 157 AKRFFFDGFIT---GDAVEAALALQFVFETAFTNLLFVALASDAAANGDYATPTVFLSIQSDEARHMANGYPTL-VLLEN 232 (465)
T ss_pred HHHHHHHHHhc---CCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHhHHHHH-HHHHc
Confidence 11222222221 2556655555443 43 4555566677888889999999999999999999999999999 88888
Q ss_pred CCC
Q 016050 280 DPD 282 (396)
Q Consensus 280 dPd 282 (396)
||+
T Consensus 233 Dp~ 235 (465)
T cd01057 233 DPD 235 (465)
T ss_pred Ccc
Confidence 986
No 45
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=88.46 E-value=12 Score=38.63 Aligned_cols=180 Identities=17% Similarity=0.223 Sum_probs=94.3
Q ss_pred HHHHHHhhhhccccccCCCCCCCCCCCCCCCchHHHHHHHHhhcCCChHHHHHHHHHhhhccchhhHHHH-----hhhhc
Q 016050 78 DWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTM-----LNTLD 152 (396)
Q Consensus 78 ~~v~~~~~~~L~pv~~~WqP~D~lPw~~~~~F~~~~~e~r~~~~~Lpdd~~v~Lv~~miTEdnLPtY~~~-----L~~~f 152 (396)
+|+.+.-..+++ .-|.|.+ +|- ...+.+|. +||++-+.++...+--=-.|.+-+.. +..+.
T Consensus 35 ~~~~~lyk~~~~---~fW~peE-v~l------s~D~~dw~----~Lt~~Er~~~~~~L~~lt~lDs~q~~~~~~~~~~~i 100 (376)
T PRK09101 35 EIFEKLIEKQLS---FFWRPEE-VDV------SRDRIDYQ----ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLV 100 (376)
T ss_pred HHHHHHHHHHHh---CCCCccc-ccc------cccHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHC
Confidence 666666554433 5899988 443 33455664 38888777654333211123333321 11222
Q ss_pred cCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhCCC--ChHHhHHH----------HHHH---hhcCCCC-----
Q 016050 153 GVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRV--DMRQIEKT----------IQYL---IGSGMDP----- 212 (396)
Q Consensus 153 gv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrv--Dp~~lE~~----------~~~l---i~~G~d~----- 212 (396)
..++...+...|.++|+-|+..----+ ..+ |+..+... .+.+ ..+-.+.
T Consensus 101 --------~~pE~~~~~~~q~~~E~IHs~sYs~il---~tl~~~~~e~f~~~~~~~~i~~K~~~i~~~y~~~~~~~~~~~ 169 (376)
T PRK09101 101 --------SIPELETWIETWSFSETIHSRSYTHII---RNIVNDPSVVFDDIVTNEEILKRAKDISSYYDDLIEMTSYYH 169 (376)
T ss_pred --------ChHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 256778899999999999997643222 111 44432221 1111 0100000
Q ss_pred ---------C-----CCCCchh-----hHhhhHhhhhhHHHH-HHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016050 213 ---------R-----TENSPYL-----GFIYTSFQERATFIS-HGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKI 272 (396)
Q Consensus 213 ---------~-----~~~~p~~-----~~vYtsfQE~AT~is-h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~i 272 (396)
+ .....+. .++...+.|---+.+ ...+--+++.--=+-++++...|++||..|-.|...+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l 249 (376)
T PRK09101 170 LLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHM 249 (376)
T ss_pred hcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0001112 223333455432211 1111122222224568999999999999999999999
Q ss_pred HHHHHh--hCCC
Q 016050 273 VEKLFE--IDPD 282 (396)
Q Consensus 273 v~~~le--~dPd 282 (396)
++.+.. .+|+
T Consensus 250 ~~~l~~~~e~p~ 261 (376)
T PRK09101 250 LNLMRSGKDDPE 261 (376)
T ss_pred HHHHhhcccChh
Confidence 999885 6665
No 46
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=87.78 E-value=1.3 Score=39.36 Aligned_cols=56 Identities=16% Similarity=0.054 Sum_probs=41.8
Q ss_pred hHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCC
Q 016050 225 TSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD 282 (396)
Q Consensus 225 tsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd 282 (396)
.+.-|.++...|-.-+...+ .++|.+++++..||.||.+|+..+.+++..+ .-+|.
T Consensus 24 g~~~E~~ai~~Y~y~~~~~~-~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~l-gg~p~ 79 (154)
T cd07908 24 GTNSELTAISQYIYQHLISE-EKYPEIAETFLGIAIVEMHHLEILGQLIVLL-GGDPR 79 (154)
T ss_pred CcchHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCc
Confidence 34456677666665544443 4799999999999999999999999998773 33443
No 47
>PRK13456 DNA protection protein DPS; Provisional
Probab=87.36 E-value=19 Score=34.25 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhhhc-cchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHh---HhCCCChHHhHH
Q 016050 125 DDYFVVLVGDMITE-EALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLY---LSGRVDMRQIEK 200 (396)
Q Consensus 125 dd~~v~Lv~~miTE-dnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~---lsgrvDp~~lE~ 200 (396)
+.++..|.-++-+| .+.=-|...-..+.|+ ...+.+.++..=..||.+|++.|..=++ =++-.||..+..
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~------~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ 92 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLIGL------EGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHD 92 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhh
Confidence 45556666666666 3333333333345554 3456677887778899999999986553 344457776654
Q ss_pred HHHHHhhcCC-CCCCCCCchhhHhhhHh-hhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016050 201 TIQYLIGSGM-DPRTENSPYLGFIYTSF-QERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 278 (396)
Q Consensus 201 ~~~~li~~G~-d~~~~~~p~~~~vYtsf-QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 278 (396)
+..+++ +++.+.+-+..++=..+ =|+..=..|+.+-+.+. .-||+=..|.-.|=+||..|+.-|.++++
T Consensus 93 ----ls~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~~IL~dE~eH~~dl~~lL~---- 163 (186)
T PRK13456 93 ----ISACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLALAILQEEIEHEAWFSELLG---- 163 (186)
T ss_pred ----hhcCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 556677 33221112555554444 47777788998888877 34999999999999999999999888764
Q ss_pred hCCCc
Q 016050 279 IDPDG 283 (396)
Q Consensus 279 ~dPd~ 283 (396)
.-|.|
T Consensus 164 ~~~~~ 168 (186)
T PRK13456 164 GGPSG 168 (186)
T ss_pred cCCCc
Confidence 45554
No 48
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=86.61 E-value=4 Score=38.55 Aligned_cols=109 Identities=18% Similarity=0.187 Sum_probs=74.6
Q ss_pred hhHhHHhhcchhhhhhhhHHHHhHHhHhCC----CChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHH
Q 016050 163 TSWAIWTRAWTAEENRHGDLLNKYLYLSGR----VDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGN 238 (396)
Q Consensus 163 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgr----vDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~n 238 (396)
.++..=+..=.-||-+|=.-..+-+.--|. ..+...-.....+++.| +| .--+..|+..++-| +=||..
T Consensus 48 ~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~-~p---~~llD~Llv~alIE---ARScER 120 (180)
T cd07910 48 PELVEAMSDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKG-EP---ERLLDRLLVAALIE---ARSCER 120 (180)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccC-Ch---HHHHHHHHHHHHHH---HHhHHH
Confidence 344444455566888887666666543332 12221222223334332 22 23467888899988 457888
Q ss_pred HHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016050 239 TARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 278 (396)
Q Consensus 239 tarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 278 (396)
.+.+|...-|+.|++....+..-|+|||.-|-++-..|++
T Consensus 121 F~lLa~~l~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~~ 160 (180)
T cd07910 121 FALLAPALPDPELKKFYRGLLESEARHYELFLDLARKYFD 160 (180)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 9999876689999999999999999999999999999986
No 49
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=86.31 E-value=2 Score=40.04 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=51.2
Q ss_pred CchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhC
Q 016050 217 SPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 280 (396)
Q Consensus 217 ~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 280 (396)
+....+.+.---|..---+|..+++. ..|+.++++...||.||.+|..-|.+++.+....+
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~---~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAER---IEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 44566777777888888999988887 55999999999999999999999999998765544
No 50
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=86.03 E-value=11 Score=32.76 Aligned_cols=113 Identities=11% Similarity=-0.023 Sum_probs=82.2
Q ss_pred CCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHH
Q 016050 158 TGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHG 237 (396)
Q Consensus 158 ~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ 237 (396)
.|.++..+...+...-.||..|.|.|..-+..-|..-....+....+..-..... ...+.-..+-...--|..+...++
T Consensus 25 ~G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~-~~~~~~~~l~~~~~~~~~~i~~~~ 103 (139)
T cd01043 25 KGPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA-GVLSAKEMVAELLEDYETLIEELR 103 (139)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455778888899999999999999999997767665555555433322211111 112444566666667788888899
Q ss_pred HHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHH
Q 016050 238 NTARLAKEHGDMKLAQICGTIASDEKRHETAYTK 271 (396)
Q Consensus 238 ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~ 271 (396)
...+.|.+.||++.+.++..|-+++..|--+...
T Consensus 104 ~~i~~a~~~~D~~t~~ll~~il~~~ek~~w~l~a 137 (139)
T cd01043 104 EAIELADEAGDPATADLLTEIIRELEKQAWMLRA 137 (139)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888889999999999999999888766654
No 51
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=85.26 E-value=1.6 Score=44.52 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 232 TFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 232 T~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
-++-|.-++|..| ..+|+|+++.+..|+||+||..|--+-++.
T Consensus 88 GflLYKEl~rrlk-~~~P~lae~F~~MaRDEARHAGFlNkam~d 130 (337)
T TIGR02029 88 GFLLYKELSRRLK-NRDPVVAELFQLMARDEARHAGFLNKALGD 130 (337)
T ss_pred hhHHHHHHHHhcC-CCChHHHHHHHHHhhhhHHHhhhHHHHHHH
Confidence 3556777777765 469999999999999999999987766653
No 52
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=84.50 E-value=3.7 Score=35.38 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=57.2
Q ss_pred hhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHH
Q 016050 163 TSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARL 242 (396)
Q Consensus 163 ~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarl 242 (396)
+.-..-...=.-+|-+|...+++++---|..-+..-.+...+.+-..+. ++...+-..-=.|..+-.+|..++..
T Consensus 27 ~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----g~~~~l~~~~~~E~~ai~~Y~~~~~~ 101 (125)
T cd01044 27 PENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLKIFFYKLLARIF-----GPTFVLKLLERGEERAIEKYDRLLEE 101 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHH-----hHHHHHHHHHHhHHhhHhhHHhhhhh
Confidence 3445556666778999999999988443332111111111111110110 11111112223688899999977663
Q ss_pred HHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016050 243 AKEHGDMKLAQICGTIASDEKRHETAYTKIVE 274 (396)
Q Consensus 243 a~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 274 (396)
..++.+|..||..|+.-+.++.+
T Consensus 102 ---------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 102 ---------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 45778899999999998887754
No 53
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=81.72 E-value=2.5 Score=42.89 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=36.2
Q ss_pred hhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 228 QERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 228 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
-|=.-++-|.-++|..|.. .|+|+++.+..|+||+||..|--+-+..
T Consensus 74 aEFSGflLYKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkam~d 120 (323)
T cd01047 74 SEFSGFLLYKELGRRLKNT-NPVVAELFRLMARDEARHAGFLNKALSD 120 (323)
T ss_pred hhhhhHHHHHHHHHHcccC-CcHHHHHHHHHhhhHHHHhhhHHHHHHH
Confidence 3444456688788876533 7999999999999999999987766653
No 54
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=81.69 E-value=4.9 Score=39.67 Aligned_cols=116 Identities=16% Similarity=0.075 Sum_probs=80.4
Q ss_pred hcchhhhhhhhHHHHhHH-hHhC-CCChHHhHHHHHHHhhcCCC------CCCCCCchhhHhhhHhhhhhHHHHHHHHHH
Q 016050 170 RAWTAEENRHGDLLNKYL-YLSG-RVDMRQIEKTIQYLIGSGMD------PRTENSPYLGFIYTSFQERATFISHGNTAR 241 (396)
Q Consensus 170 ~~WTAEEnRHG~aLr~YL-~lsg-rvDp~~lE~~~~~li~~G~d------~~~~~~p~~~~vYtsfQE~AT~ish~ntar 241 (396)
.+=.-+|..|+..|-.|+ -+-| ..|.+.+.-.+. ...|. .+. .+=...++...|-+++-.+.+..+..
T Consensus 53 ~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~~R~---~~~~rn~~l~e~p~-~dwa~~v~r~~l~d~~~~~~l~~l~~ 128 (263)
T PF05138_consen 53 ANIAQDELGHARLLYRLLEELEGEGRDEDDLAFLRD---AREFRNLLLFEQPN-GDWADTVARQFLFDRAGKVLLEALAD 128 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHHHHH---TTCS-SSGGGGS----SHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHhhcc---cchhhhhhhhccCC-CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344678999999999999 3323 236665544322 11221 111 14456788888888888888886644
Q ss_pred HHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhC---CCchHHHHHHHHH
Q 016050 242 LAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID---PDGTIVSFADMMR 293 (396)
Q Consensus 242 la~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d---Pd~tm~Aia~mm~ 293 (396)
+.++.|++++.+|-++|.-|..+-.+.+.++-.-. ...+..||..+..
T Consensus 129 ----ssy~pla~~a~k~~kEe~yH~~h~~~w~~rL~~gt~es~~r~q~Al~~~wp 179 (263)
T PF05138_consen 129 ----SSYEPLAAIAAKILKEEAYHLRHGEDWLRRLGDGTEESRERMQAALDRLWP 179 (263)
T ss_dssp -----SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66999999999999999999999999999988433 4445557777665
No 55
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=81.14 E-value=3 Score=42.81 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016050 232 TFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVE 274 (396)
Q Consensus 232 T~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 274 (396)
-++-|.-++|..| ..+|+|+++.+..|+||+||..|--+-+.
T Consensus 94 GflLYKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkam~ 135 (351)
T CHL00185 94 GFLLYKELSRKLK-DKNPLLAEGFLLMSRDEARHAGFLNKAMS 135 (351)
T ss_pred hhHHHHHHHHHhc-cCCcHHHHHHHHHhhhhHHHhhhHHHHHH
Confidence 3556777777765 33799999999999999999988666554
No 56
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=81.12 E-value=2.7 Score=43.22 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 233 FISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 233 ~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
++-|.-++|..|.. +|.|+++.+..|+||+||..|--+-++.
T Consensus 99 flLYKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkam~d 140 (355)
T PRK13654 99 FLLYKELSRRLKDR-NPLLAELFQLMARDEARHAGFLNKAMKD 140 (355)
T ss_pred HHHHHHHHHhcccc-CcHHHHHHHHHhhhHHHHhhhHHHHHHH
Confidence 45677777766533 8999999999999999999987766653
No 57
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=80.51 E-value=13 Score=33.53 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=80.2
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHh-HhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLY-LSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTA 240 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~-lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 240 (396)
-+.++.|.+.=..||-.|+..|-+|+. .-|.+....+.... ...| .++...|-..-=.|..-..++.++.
T Consensus 36 l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~----~~~~-----~~~~e~~e~al~~Ek~v~~~i~~l~ 106 (160)
T cd00904 36 LKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPP----SDEW-----GGTLDAMEAALKLEKFVNQALLDLH 106 (160)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCc----cccc-----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999994 44455544444311 0011 3566677677778888888899999
Q ss_pred HHHHhhCCHHHHHHHhH-hhhhhhHHHHHHHHHHHHHH
Q 016050 241 RLAKEHGDMKLAQICGT-IASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 241 rla~~~gDPvLa~I~~~-IAaDE~RH~~~Y~~iv~~~l 277 (396)
++|.+.+|++....+.. .-.+-..-.+-+.+++..+-
T Consensus 107 ~~A~~~~D~~t~~fl~~~fi~eQ~ee~~~~~~~l~~l~ 144 (160)
T cd00904 107 ELASEEKDPHLCDFLESHFLDEQVKEIKQVGDILTNLE 144 (160)
T ss_pred HHHHHCCCHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888 77777777777777776543
No 58
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=80.40 E-value=2.5 Score=43.44 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 233 FISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 233 ~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
++-|..++|..|. .+|.|+++.+..|+||+||..|--+-++.
T Consensus 95 flLYKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkam~D 136 (357)
T PLN02508 95 FLLYKELGRRLKK-TNPVVAEIFTLMSRDEARHAGFLNKALSD 136 (357)
T ss_pred chHHHHHHHhccc-CChHHHHHHHHhCchhHHHHhHHHHHHHH
Confidence 4567878887653 47999999999999999999987776654
No 59
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=79.68 E-value=4.5 Score=39.82 Aligned_cols=155 Identities=16% Similarity=0.168 Sum_probs=71.2
Q ss_pred CCCCCCCCC-CCchH-HHHHHHHhhcCCChHHHHHHHHHhhhccchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhh
Q 016050 98 QDFLPDPAS-DGFDE-QVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAE 175 (396)
Q Consensus 98 ~D~lPw~~~-~~F~~-~~~e~r~~~~~Lpdd~~v~Lv~~miTEdnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAE 175 (396)
+-.|+|-.. ++|.- +..+|+ .--+...++...+.|.+...+...-. =.-|
T Consensus 61 ~~ll~~~~py~~~~~~~~~~~~----------~~~~~~~~~~~~~~P~~~eLv~~Ms~------------------LarE 112 (240)
T PF06175_consen 61 QALLAWLKPYEDFVYRKDGDIQ----------KNQLSKSLQPKSHYPEKEELVDKMSR------------------LARE 112 (240)
T ss_dssp -------------------------------------------------HHHHHHHHH------------------HHHH
T ss_pred cccccccccccccccccccccc----------cccccccccccccccccHHHHHHHHH------------------HHHH
Confidence 456777554 66753 333444 44555666777788888766554432 2457
Q ss_pred hhhhhHHHHhHHhHhCCCChHHhH--HHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHH
Q 016050 176 ENRHGDLLNKYLYLSGRVDMRQIE--KTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQ 253 (396)
Q Consensus 176 EnRHG~aLr~YL~lsgrvDp~~lE--~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~ 253 (396)
|-.|=.-.-+-+.- |.+.-..+. .+...+++. ...+.+.--+..|+..++.| +=|+...+.+|... |+.|++
T Consensus 113 EL~HFeqVl~im~~-RGi~l~~~~~d~Ya~~L~k~-vR~~ep~~lvDrLLv~AlIE---ARSCERF~lLa~~l-D~eL~~ 186 (240)
T PF06175_consen 113 ELHHFEQVLEIMKK-RGIPLGPDRKDRYAKGLRKH-VRKGEPERLVDRLLVGALIE---ARSCERFALLAEHL-DEELAK 186 (240)
T ss_dssp HHHHHHHHHHHHHH-TT---------SHHHHHHTT-S-SSTTHHHHHHHHHHHHHH---HHHHHHHHHHGGGS--HHHHH
T ss_pred HHHHHHHHHHHHHH-cCCCCCCCCcCHHHHHHHHh-ccCCchHhHHHHHHHHHhHh---hhhHHHHHHHHHhh-CHHHHH
Confidence 77776555544422 222222222 223333331 11111123466889999999 45788899998877 999999
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHH
Q 016050 254 ICGTIASDEKRHETAYTKIVEKLFEIDPDGTIV 286 (396)
Q Consensus 254 I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~ 286 (396)
....+..=|+|||.-|.++-..|++.+=+..+.
T Consensus 187 FY~~Ll~SEArHy~~yl~LA~~y~~~~V~~Rl~ 219 (240)
T PF06175_consen 187 FYRSLLRSEARHYQDYLKLARQYFDEDVDERLQ 219 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCS-HHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHCCccHHHHHH
Confidence 999999999999999999888877653333333
No 60
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=78.62 E-value=30 Score=40.30 Aligned_cols=151 Identities=15% Similarity=0.026 Sum_probs=103.0
Q ss_pred HHHHhhcCCChHHHHHHHHHhhhccchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhCCCC
Q 016050 115 ELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVD 194 (396)
Q Consensus 115 e~r~~~~~Lpdd~~v~Lv~~miTEdnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvD 194 (396)
+|-.+.+-=.+-..-+|..++-.|...=.|-+.++.--. +..-......=..||.+|-+.|.+.+-- ..
T Consensus 849 ~~~~~~~~~~~~~~eil~~Ai~mE~~g~~FY~~~A~~a~--------~~~~K~lF~~LA~eE~~H~~~l~~~~~~--~~- 917 (1006)
T PRK12775 849 QALDRRKVEDAAALEAIRTAFEIELGGMAFYARAAKETS--------DPVLKELFLKFAGMEQEHMATLARRYHA--AA- 917 (1006)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc-
Confidence 333444434466778999999999888777766665432 5667778888889999999998777621 11
Q ss_pred hHHhHHH-HH-HHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCH-HHHHHHhHhhhhhhHHHHHHHH
Q 016050 195 MRQIEKT-IQ-YLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDM-KLAQICGTIASDEKRHETAYTK 271 (396)
Q Consensus 195 p~~lE~~-~~-~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDP-vLa~I~~~IAaDE~RH~~~Y~~ 271 (396)
+...+.+ .. ...-.++... ..++...+-+..-.|..+..+|..+++. ..|+ ..++|+..||.-|+.|.....+
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~al~lAm~~Ekdai~fY~~la~~---~~d~e~~k~l~~~LA~EEk~Hl~~L~~ 993 (1006)
T PRK12775 918 PSPTEGFKIERAAIMAGVKGR-PDDPGNLFRIAIEFERRAVKFFKERVAE---TPDGSVERQLYKELAAEEREHVALLTT 993 (1006)
T ss_pred CCcccccccchhhhhhhhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 00 0111122111 2356777777888999999999988775 5687 5899999999999999999999
Q ss_pred HHHHHHhhC
Q 016050 272 IVEKLFEID 280 (396)
Q Consensus 272 iv~~~le~d 280 (396)
.++++-+--
T Consensus 994 ~~d~~~~~~ 1002 (1006)
T PRK12775 994 EFERWKQGK 1002 (1006)
T ss_pred HHHHHhccC
Confidence 998765533
No 61
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=77.51 E-value=29 Score=34.92 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=86.4
Q ss_pred HHHHhhhccchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHH-hHhCCC-ChHHhHHHH------
Q 016050 131 LVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL-YLSGRV-DMRQIEKTI------ 202 (396)
Q Consensus 131 Lv~~miTEdnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL-~lsgrv-Dp~~lE~~~------ 202 (396)
+..-...|-++=.-..++..... .+.+....---+.-|.||+.-+-.|. ++++.. ++. ....+
T Consensus 105 l~p~~~~E~ga~~~~a~~~r~~~--------~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~-~~~~k~~W~~d 175 (304)
T cd01058 105 LGPLRHVEHGLQMANAYVAQYAP--------STTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFD-GDAAKEAWEED 175 (304)
T ss_pred HhhHHHHHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCC-chHHHHHHhcC
Confidence 33444455444444444433321 33455555666778888888877665 554432 221 11111
Q ss_pred ------HHHhhcCCCCCCCCCchhhHhhhHhh-h-hhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016050 203 ------QYLIGSGMDPRTENSPYLGFIYTSFQ-E-RATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVE 274 (396)
Q Consensus 203 ------~~li~~G~d~~~~~~p~~~~vYtsfQ-E-~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 274 (396)
..++...+-. .++...++...|+ | .-|...+..+.+.|...||..+..|..-+-.||.||..-=..+|+
T Consensus 176 p~Wq~~R~~~E~~~~~---~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~s~q~d~~Rh~~~~~alvk 252 (304)
T cd01058 176 PAWQGLRELVEKLLVT---YDWGEAFVAQNLVFDPLVGELVRRELDRLAASNGDTLTPLLTEFMLDDAQRHRRWTDALVK 252 (304)
T ss_pred chhHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222211 2555655555443 2 346667777888888899999999999999999999999999999
Q ss_pred HHHhhCCC
Q 016050 275 KLFEIDPD 282 (396)
Q Consensus 275 ~~le~dPd 282 (396)
-+++.+|+
T Consensus 253 ~l~~~~~~ 260 (304)
T cd01058 253 TAAEDSPH 260 (304)
T ss_pred HHHccChh
Confidence 88877666
No 62
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=77.07 E-value=5.6 Score=37.48 Aligned_cols=115 Identities=19% Similarity=0.174 Sum_probs=79.3
Q ss_pred hcchhhhhhhhHHHHhHHhHhCCCChHH-----hHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHH
Q 016050 170 RAWTAEENRHGDLLNKYLYLSGRVDMRQ-----IEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAK 244 (396)
Q Consensus 170 ~~WTAEEnRHG~aLr~YL~lsgrvDp~~-----lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~ 244 (396)
..-.-||.+|=...+..|-- |.+--+- .-+-...+++ .-+| ..-+..++-+++-| +-||...|.+|-
T Consensus 65 ~~larEEL~HFeqV~eilq~-RnI~~~~i~asrYa~~l~~~~r-t~EP---qrliD~Livga~IE---ARScERfa~Lap 136 (203)
T COG4445 65 VLLAREELHHFEQVLEILQA-RNIPYVPIPASRYAKGLLAAVR-THEP---QRLIDKLIVGAYIE---ARSCERFAALAP 136 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCccccCCccHHHHHHHHHHH-hcCc---HHHHHHHHHHHHHh---hhhHHHHHhhcc
Confidence 34556888888777777633 2221111 1111111221 1122 13456788888888 457888999987
Q ss_pred hhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhh-CCCchHHHHHHHHH
Q 016050 245 EHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEI-DPDGTIVSFADMMR 293 (396)
Q Consensus 245 ~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~-dPd~tm~Aia~mm~ 293 (396)
.+ |..|++..+-+-+-|+|||.-|..+-..|++. |=.+++.-|+.+=.
T Consensus 137 hl-deelakFY~gLl~SEaRHfqdYl~LA~qy~d~~dvs~rv~~~~~vEa 185 (203)
T COG4445 137 HL-DEELAKFYKGLLRSEARHFQDYLVLADQYFDEEDVSQRVDYFGIVEA 185 (203)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55 55999999999999999999999999999998 78888888877655
No 63
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=76.94 E-value=12 Score=33.01 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=61.9
Q ss_pred hhhhhhhhHHHHhHHhHhCCCChHHhHH------H-HHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHh
Q 016050 173 TAEENRHGDLLNKYLYLSGRVDMRQIEK------T-IQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKE 245 (396)
Q Consensus 173 TAEEnRHG~aLr~YL~lsgrvDp~~lE~------~-~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~ 245 (396)
..+|.+|-+.|..-+---+--+|..-.. . ...++..|. .+....+-..+-.|...--+|..+++ .
T Consensus 36 a~~E~~H~~~l~~L~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~-----~s~~~al~~g~~~E~~~i~~ye~~~~---~ 107 (135)
T cd01048 36 AESEQRHMDALKTLLERYGLPDPVDPFSGGVFTNPQYNQLVEQGP-----KSLQDALEVGVLIEELDIADYDRLLE---R 107 (135)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccccccccchhHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 4789999999988874222222221000 0 001111121 24466777777889999999997766 4
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHH
Q 016050 246 HGDMKLAQICGTIASDEKRHETAYTKI 272 (396)
Q Consensus 246 ~gDPvLa~I~~~IAaDE~RH~~~Y~~i 272 (396)
+.|+.+++++.+++.-|..|+..|.+-
T Consensus 108 ~~d~d~k~v~~~L~~~e~~H~~~f~~~ 134 (135)
T cd01048 108 TQNPDIRDVFENLQAASRNHHLPFFRR 134 (135)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 669999999999999999999988763
No 64
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=76.29 E-value=25 Score=30.92 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 228 QERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 228 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
.|......|...+..++..|-|.++..+..+|.+|..|...+.+++..
T Consensus 14 ~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~ 61 (156)
T cd01055 14 LELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLND 61 (156)
T ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777789999999888999999999999999999999988887754
No 65
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=73.48 E-value=4.8 Score=41.19 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=30.8
Q ss_pred hHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHH
Q 016050 143 TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL 187 (396)
Q Consensus 143 tY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL 187 (396)
+|-++|..+-......-...-|..+|...|--.|||||+...--+
T Consensus 165 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm 209 (337)
T TIGR02029 165 GYWRYITIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALM 209 (337)
T ss_pred hhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHH
Confidence 355556544443332222245889999999999999999987665
No 66
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=72.06 E-value=4.2 Score=41.37 Aligned_cols=53 Identities=19% Similarity=0.400 Sum_probs=34.5
Q ss_pred hHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhH
Q 016050 143 TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIE 199 (396)
Q Consensus 143 tY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE 199 (396)
+|-++|..+-......-...-|..+|...|--.|||||+...--+ +.+|.-+.
T Consensus 155 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm----rsqP~ll~ 207 (323)
T cd01047 155 GYWRYITIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALL----RAQPHLLN 207 (323)
T ss_pred hhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHH----hcChhhhh
Confidence 355566544443332222245889999999999999999987665 34555443
No 67
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=69.86 E-value=5.2 Score=41.17 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=29.7
Q ss_pred HHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHH
Q 016050 144 YQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL 187 (396)
Q Consensus 144 Y~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL 187 (396)
|-++|..+-......-...-|..+|...|--.|||||+...--+
T Consensus 172 YwRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lm 215 (357)
T PLN02508 172 YWRYITIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALL 215 (357)
T ss_pred hhhHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHH
Confidence 55555544333222222245889999999999999999887665
No 68
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=68.29 E-value=6.6 Score=40.40 Aligned_cols=45 Identities=20% Similarity=0.416 Sum_probs=30.0
Q ss_pred hHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHH
Q 016050 143 TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL 187 (396)
Q Consensus 143 tY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL 187 (396)
+|-++|..+-......--..-|..+|...|--.||||||...--+
T Consensus 171 GYwRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEnRHGdfF~alm 215 (351)
T CHL00185 171 GYWRYITIYRHLEKNPEYRIYPIFKFFESWCQDENRHGDFFAALL 215 (351)
T ss_pred hhhHHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHH
Confidence 355555544333222222235889999999999999999887665
No 69
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=67.67 E-value=8.8 Score=44.60 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=40.8
Q ss_pred HhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 226 SFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 226 sfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
-=-|.....||..+++ +.++|.+++|...+|..|..|+..+.++++.
T Consensus 869 i~mE~~g~~FY~~~A~---~a~~~~~K~lF~~LA~eE~~H~~~l~~~~~~ 915 (1006)
T PRK12775 869 FEIELGGMAFYARAAK---ETSDPVLKELFLKFAGMEQEHMATLARRYHA 915 (1006)
T ss_pred HHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3358999999997666 4679999999999999999999999888764
No 70
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=63.18 E-value=11 Score=33.37 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=39.0
Q ss_pred hHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016050 221 GFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 276 (396)
Q Consensus 221 ~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 276 (396)
.+.|.-=-|.-...+|..+++. +| +.++...||..|.+|+.+..++++++
T Consensus 4 ~L~~Ale~Ek~a~~~Y~~~~~k---~~---~~~~F~~la~~E~~H~~~l~~L~~~~ 53 (135)
T cd01048 4 ALLYALEEEKLARDVYLALYEK---FG---GLRPFSNIAESEQRHMDALKTLLERY 53 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hc---CcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555678888899977774 44 78999999999999999888887663
No 71
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=62.91 E-value=4 Score=42.04 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=30.7
Q ss_pred hHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHH
Q 016050 143 TYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL 187 (396)
Q Consensus 143 tY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL 187 (396)
+|-++|..+-......-...-|..+|...|--.|||||+...--+
T Consensus 175 GYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lm 219 (355)
T PRK13654 175 GYWRYITIYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLM 219 (355)
T ss_pred hHHHHHHHHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHH
Confidence 355666644443232222245889999999999999999887665
No 72
>PRK15022 ferritin-like protein; Provisional
Probab=60.73 E-value=1.4e+02 Score=27.70 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=75.1
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHhHhC-CCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLYLSG-RVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTA 240 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsg-rvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 240 (396)
.+.++.|.+.=..||--|+.-|-+|+.-.| ++--..|..- +..-+++...|-.+-=+|+.-..+..++.
T Consensus 36 L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P----------~~~~~s~~e~fe~al~hEk~vt~~I~~L~ 105 (167)
T PRK15022 36 LNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVP----------GEKLNSLEELFQKTLEEYEQRSSTLAQLA 105 (167)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCC----------ccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999994433 3333332221 11124778888888889999999999999
Q ss_pred HHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016050 241 RLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 241 rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 277 (396)
++|.+.+|+.....+.--=....-=++-+.++++++-
T Consensus 106 ~~A~~~~D~~t~~FL~wfv~EQ~eEe~~~~~ild~l~ 142 (167)
T PRK15022 106 DEAKALNDDSTLNFLRDLEKEQQHDGLLLQTILDEVR 142 (167)
T ss_pred HHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887776444333323334555555443
No 73
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=59.08 E-value=26 Score=30.53 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 228 QERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 228 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
-|.....-|.+.+..++..|-+.++..+..+|.||..|..-+.+.+..
T Consensus 16 ~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~ 63 (153)
T cd00907 16 GELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILF 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666778888888888899999999999999999999888877754
No 74
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=57.36 E-value=26 Score=29.21 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016050 235 SHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 235 sh~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 277 (396)
-|..||+=|...||.||++=|- -|..+|.+|+...-
T Consensus 41 KY~~LArDA~ssGDrV~aEny~-------QHAeHY~Ril~~~~ 76 (80)
T PF13763_consen 41 KYNQLARDAQSSGDRVLAENYL-------QHAEHYFRILAAAQ 76 (80)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3899999999999999998886 79999999998654
No 75
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=57.22 E-value=20 Score=33.55 Aligned_cols=43 Identities=30% Similarity=0.328 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016050 236 HGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 278 (396)
Q Consensus 236 h~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 278 (396)
|-..+..|+..|+...+.-...++.||++|...|+..++.+.+
T Consensus 89 yp~~ae~A~~~g~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~~ 131 (166)
T COG1592 89 YPVFAEVAEEEGFKEAARSFRAAAKAEKRHAEMFRGLLERLEE 131 (166)
T ss_pred ChHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3345566777898999999999999999999999999988744
No 76
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=54.77 E-value=43 Score=32.72 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=52.9
Q ss_pred hcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCH
Q 016050 170 RAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDM 249 (396)
Q Consensus 170 ~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDP 249 (396)
..|++||.-=+.=+.+|--+ ++. | +..+. ..+.+-++-|..-.... +..+......|
T Consensus 29 ~fW~peEi~~~~D~~~~~~L----s~~--e---~~~~~------------~~l~~~~~~D~~v~~~l--~~~i~~~~~~~ 85 (281)
T PF00268_consen 29 NFWTPEEIDMSKDIKDWKKL----SEE--E---REAYK------------RILAFFAQLDSLVSENL--LPNIMPEITSP 85 (281)
T ss_dssp T---GGGS-GGGHHHHHHHS-----HH--H---HHHHH------------HHHHHHHHHHHHHHHHH--HHHHHHHCSSH
T ss_pred CCCCchhcChhhhHHHHHhC----CHH--H---HHHHH------------HHHHHHHHHHhHHHhhH--HHHHHHHcCHH
Confidence 58999998776666666543 111 1 12221 23333333333222222 03333446699
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCc
Q 016050 250 KLAQICGTIASDEKRHETAYTKIVEKLFEIDPDG 283 (396)
Q Consensus 250 vLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 283 (396)
-++.+++..+..|+.|..+|..+++.+. .++..
T Consensus 86 E~~~~l~~q~~~E~iH~~sYs~il~~l~-~~~~~ 118 (281)
T PF00268_consen 86 EIRAFLTFQAFMEAIHAESYSYILDSLG-NDPKE 118 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHH
Confidence 9999999999999999999999999987 44433
No 77
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=54.77 E-value=2.4e+02 Score=28.42 Aligned_cols=118 Identities=24% Similarity=0.347 Sum_probs=62.4
Q ss_pred HHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhh
Q 016050 167 IWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEH 246 (396)
Q Consensus 167 ~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~ 246 (396)
.+.+.|+..+ .+.++|+.+|++ +...|+++. +|+. +.+..+
T Consensus 86 ~~~~~~~~~~-~~~~~l~~~LVL---------------~ADHgln~S-------t~aa----------------Rv~ASt 126 (282)
T cd06102 86 RLARAWGLDP-AAADLLRRALVL---------------LADHELNAS-------TFAA----------------RVAAST 126 (282)
T ss_pred HHHHHhcCCH-HHHHHHHHHHHH---------------HhccCCCcH-------HHHH----------------HHHhcc
Confidence 4557777766 688999999966 444555541 1211 222234
Q ss_pred CCHHHHHHHhHhhh-hhhHHHHHHHHHHHHHHhhC-CCchHHHHHHHHHhccCCCc--ccCCCCCcchhhhHHHHHHHHh
Q 016050 247 GDMKLAQICGTIAS-DEKRHETAYTKIVEKLFEID-PDGTIVSFADMMRKKISMPA--HLMYDGRDDNLFEHFSAVAQRL 322 (396)
Q Consensus 247 gDPvLa~I~~~IAa-DE~RH~~~Y~~iv~~~le~d-Pd~tm~Aia~mm~~~i~MP~--~~m~dg~~~~lf~~~s~vaqr~ 322 (396)
|.+.-+.+..-|++ .=-+|-.+=.+.++-+-++. ++..-..|.++++++-.+|| |-.+...|+.. ......+.+.
T Consensus 127 gadl~~avaagl~al~Gp~HGGA~~~a~~~l~e~~~~~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa-~~L~~~~~~~ 205 (282)
T cd06102 127 GASLYAAVLAGLAALSGPRHGGATARVEALLDEALRAGDAEAAVRERLRRGEALPGFGHPLYPDGDPRA-AALLAALRPL 205 (282)
T ss_pred CCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHHhcCCccHHHHHHHHHHcCCcccCCCCCCCCCCCccH-HHHHHHHHHH
Confidence 44443444333333 23355444444333333322 33556678888888889998 55664455532 3333344444
Q ss_pred CC
Q 016050 323 GV 324 (396)
Q Consensus 323 Gv 324 (396)
+.
T Consensus 206 ~~ 207 (282)
T cd06102 206 GP 207 (282)
T ss_pred hh
Confidence 43
No 78
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=53.54 E-value=57 Score=28.18 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 016050 229 ERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFAD 290 (396)
Q Consensus 229 E~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~ 290 (396)
|......|.+....++..+.+.+...+..++.+|..|...+.+.+.. +.-.|...+..+..
T Consensus 18 e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~-lGg~p~~~~~~~~~ 78 (148)
T cd01052 18 EWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYE-LGGTPPRDPKDWYE 78 (148)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChHHHHH
Confidence 44556668888888887888999999999999999999999988876 77778876654433
No 79
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=51.31 E-value=81 Score=33.57 Aligned_cols=195 Identities=22% Similarity=0.239 Sum_probs=112.8
Q ss_pred chHHHHHHhHHHHHHHhh--hhccc----------------cccCCCCCCCCCCCC------------C--CCchH--HH
Q 016050 68 QKIEIFKSMEDWAENNIL--VHLKP----------------VEKCWQPQDFLPDPA------------S--DGFDE--QV 113 (396)
Q Consensus 68 ~~~ev~~~Le~~v~~~~~--~~L~p----------------v~~~WqP~D~lPw~~------------~--~~F~~--~~ 113 (396)
+...|.+.||+|-...+. .-+.| .-+.|--.|||.-++ . =.|.+ +-
T Consensus 15 ~dr~l~raLe~wqp~~l~WW~d~gP~~~~~~~vyLRtavsVdp~gWA~f~~VkmpdYRWGifL~P~~~~r~I~fG~hkGe 94 (471)
T TIGR03225 15 EDRKLQRALEQWQPGYIDWWKDMGPEGFQESEVYLRTAVSVDPKGWAKFDHVKMPDYRWGIFLAPQEEDRKIPFGEHKGE 94 (471)
T ss_pred ccHHHHHHHHhcCchHHHHHHhhCcccCcccceEEEeeeeecCccccccCcccCcccceeeeecCcccCceecccccccc
Confidence 345677888887655442 11112 235677777775433 1 12443 34
Q ss_pred HHHHHhhcCCChHHHHHHHHHhhh----ccchhhHHHHhhhhccCcccCCCCchhHhHHhhcchhhhhhhhHHHHhHH-h
Q 016050 114 KELRERAKELPDDYFVVLVGDMIT----EEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYL-Y 188 (396)
Q Consensus 114 ~e~r~~~~~Lpdd~~v~Lv~~miT----EdnLPtY~~~L~~~fgv~de~g~~~~~W~~Wv~~WTAEEnRHG~aLr~YL-~ 188 (396)
..|+ ++|.+++..|.--..| |-+.=-=|+.|-..-+ |--+ -+-+-+=-.||.||+=++-.-| -
T Consensus 95 ~awq----evPgE~r~~L~riIv~QgDtEpASVEQqr~lg~taP-------SlyD-~rnlfqvnvEEgRHlWaMvyLL~k 162 (471)
T TIGR03225 95 PAWQ----EVPGEYRSMLRRLIVIQGDTEPASVEQQRHLGLTAP-------SLYD-LRNLFQVNVEEGRHLWAMVYLLHK 162 (471)
T ss_pred chHh----hCCHHHHHHHHHHHhhccCCCchhHHHHHHhhccCC-------cHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4564 4999988777654443 3333222322211100 0001 0223345789999997765444 2
Q ss_pred HhCCCChHHhHHHHHHHhhc--------CCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhh
Q 016050 189 LSGRVDMRQIEKTIQYLIGS--------GMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIAS 260 (396)
Q Consensus 189 lsgrvDp~~lE~~~~~li~~--------G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAa 260 (396)
--|+-.-+..|+......++ .|+..+. +=+..|.+|+|--+.-..--..++. +|=.-|+++|.-.-.
T Consensus 163 ~FG~dGreeAe~LL~rrsGd~d~PRiL~AFN~~t~-dWlsffmFT~ftDRdGk~QL~alae----S~FdPLaRt~rfMlt 237 (471)
T TIGR03225 163 YFGRDGREEAEALLRRRSGDADNPRILGAFNEKTP-DWLSFFMFTYFTDRDGKMQLAALAE----SGFDPLSRTCRFMLT 237 (471)
T ss_pred HHCCccHHHHHHHHHhhcCCCCCcchhhhccCCCc-cHHHHhHhheeecccchhhHHHHHh----cCCchHhhhhHHHhh
Confidence 23666656555544444333 2333332 4477999999999877654443333 554458999999999
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 016050 261 DEKRHETAYTKIVEKLFEI 279 (396)
Q Consensus 261 DE~RH~~~Y~~iv~~~le~ 279 (396)
.|+.|..+=..-|+++++.
T Consensus 238 EEahHmfvGetGv~rviqr 256 (471)
T TIGR03225 238 EEAHHMFVGESGVGRVIER 256 (471)
T ss_pred hhHhHhhhhhHHHHHHHHH
Confidence 9999999988777777665
No 80
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=50.43 E-value=1.3e+02 Score=30.43 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=76.5
Q ss_pred hHHhhcchhhhhhhhHHHHhHH-hHhCCCChHHhHHHH---------------HHHhhcCCCCCCCC-------------
Q 016050 166 AIWTRAWTAEENRHGDLLNKYL-YLSGRVDMRQIEKTI---------------QYLIGSGMDPRTEN------------- 216 (396)
Q Consensus 166 ~~Wv~~WTAEEnRHG~aLr~YL-~lsgrvDp~~lE~~~---------------~~li~~G~d~~~~~------------- 216 (396)
..-+..=+.||--|=..|..=+ .+.+.......+... ++.+..|.-+..-+
T Consensus 56 kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~ 135 (283)
T PF05067_consen 56 KDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAAPGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQA 135 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHHGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhcccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhh
Confidence 3556666789999988888877 455555555555442 34555555443211
Q ss_pred --CchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhC
Q 016050 217 --SPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEID 280 (396)
Q Consensus 217 --~p~~~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~d 280 (396)
|++.-|-.-..=|-.-++-|.++=++ ++||..+.+|+-+-+=|.-|...|.+-++.+-+..
T Consensus 136 sGdl~aDL~~NiaAE~~AR~~yerL~~m---TdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l~~~~ 198 (283)
T PF05067_consen 136 SGDLIADLRSNIAAEQRARLQYERLYEM---TDDPGVKDMLSFLLAREIVHQQQFGKALEELQENF 198 (283)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45555666666777777778877665 88999999999999999999999999998877766
No 81
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.50 E-value=1.7e+02 Score=29.20 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=52.6
Q ss_pred HHHHHhhCCHHHHHHHhHhhhhhhHHHH---HHHHHHHHHHhhCCCchHHHHHHHHHhccCCCcccCCCCCcchhhhHHH
Q 016050 240 ARLAKEHGDMKLAQICGTIASDEKRHET---AYTKIVEKLFEIDPDGTIVSFADMMRKKISMPAHLMYDGRDDNLFEHFS 316 (396)
Q Consensus 240 arla~~~gDPvLa~I~~~IAaDE~RH~~---~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~s 316 (396)
+|++ +.||-.-+.|+..|=.||.-|-+ -+++++-+=-..|| +.-|...+++.+.-|-.. . |.
T Consensus 181 aK~~-~~gD~~~~~iLdIIlrDEigHVaiGn~Wyrflc~r~gldp---~~~FreL~r~y~~~~lkg--~---------~N 245 (268)
T COG2833 181 AKLA-ETGDSEAAAILDIILRDEIGHVAIGNKWYRFLCARRGLDP---AATFRELVRAYFRFILKG--P---------FN 245 (268)
T ss_pred HHHH-HcCchHHHHHHHHHHhccccceeechHHHHHHHHhcCCCh---HHHHHHHHHHhCCcccCC--c---------cc
Confidence 4554 48899999999999999999964 45555555555566 667777777444433222 1 12
Q ss_pred HHH-HHhCCCChhhHHHHHH
Q 016050 317 AVA-QRLGVYTAKDYADILE 335 (396)
Q Consensus 317 ~va-qr~GvYt~~dy~dIl~ 335 (396)
..| .++| +|+..|+.|-+
T Consensus 246 ~~AR~~AG-fT~~e~d~i~~ 264 (268)
T COG2833 246 IDARAKAG-FTQSEYDSIEA 264 (268)
T ss_pred HHHHHHcC-CCHHHHHHHHH
Confidence 223 3677 89988877643
No 82
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=49.21 E-value=2.2e+02 Score=26.78 Aligned_cols=112 Identities=25% Similarity=0.230 Sum_probs=79.2
Q ss_pred chhHhHHhhcchhhhhhhhHHHHhHHhHhCC-CChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHH
Q 016050 162 LTSWAIWTRAWTAEENRHGDLLNKYLYLSGR-VDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTA 240 (396)
Q Consensus 162 ~~~W~~Wv~~WTAEEnRHG~aLr~YL~lsgr-vDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~nta 240 (396)
.+..+.|++.=+.||..|+.-|=+|+.-+|. +--..++ ..+.+. ++|...|--+-=+|.--..+-.+++
T Consensus 36 l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~-------~P~~~~---~s~~e~f~~tlehEq~vt~~I~~L~ 105 (167)
T COG1528 36 LPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIE-------APPNKF---SSLKELFEKTLEHEQKVTSSINELA 105 (167)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcC-------CCcccc---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999955332 1111122 112222 3777788777778888888889999
Q ss_pred HHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCc
Q 016050 241 RLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDG 283 (396)
Q Consensus 241 rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 283 (396)
++|.+.+|-.--.-++---++=..-+.-+..|++++--+.-++
T Consensus 106 ~~a~~~kD~~T~nFLqWfv~EQ~eEe~l~~~I~d~~~~ag~~~ 148 (167)
T COG1528 106 EVAREEKDYATFNFLQWFVAEQVEEEKLFKTILDKLELAGNDG 148 (167)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9988888877666666666666666677777777765544443
No 83
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=45.94 E-value=2.3e+02 Score=27.84 Aligned_cols=116 Identities=9% Similarity=-0.024 Sum_probs=73.1
Q ss_pred hhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHh-hc--CCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCCH
Q 016050 173 TAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLI-GS--GMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDM 249 (396)
Q Consensus 173 TAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li-~~--G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gDP 249 (396)
.-+|.-|+..|-.|+---+..|.+.+.-.+...- ++ =++.+. .+=...++-..|...+..+.+..+.. +-++
T Consensus 32 alD~lGhAr~~y~~a~el~g~~ed~La~~R~~~~frn~~l~e~P~-gdwa~tv~r~~l~d~~~~~~l~~L~~----ss~~ 106 (237)
T TIGR02158 32 ALDLLGHARMFLSLAGQLGGGDEDTLAFFRDEAEFRNLRLTELPN-GDFALTIARQFLYDAYKVLLLEALTQ----SRDV 106 (237)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHhcChHHhhhhHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHh----CCcH
Confidence 4567889999999993322347666542211111 00 112211 13344555556666666666554433 6699
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCC---CchHHHHHHHHH
Q 016050 250 KLAQICGTIASDEKRHETAYTKIVEKLFEIDP---DGTIVSFADMMR 293 (396)
Q Consensus 250 vLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dP---d~tm~Aia~mm~ 293 (396)
.|+.|+.+|-+.|..|..+=.+.+.++-+-.. ..+-.|+..+..
T Consensus 107 pla~ia~K~~kEe~yH~~h~~~w~~rL~~gt~es~~r~Q~Ald~~wp 153 (237)
T TIGR02158 107 PLAAIAAKALKEARYHLQHAKTWLERLGLGTEESHRRLQEALNELWP 153 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999774433 234456766665
No 84
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=45.87 E-value=50 Score=30.10 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=44.6
Q ss_pred hHhhhHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016050 221 GFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 278 (396)
Q Consensus 221 ~~vYtsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 278 (396)
.-.-.++-|..+.+-|-.-+-..+ .+|.++.++..||.+|..|...+...+..+.+
T Consensus 27 ~~~gG~~gEl~ai~qYl~q~~~~~--~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~ 82 (156)
T cd01051 27 EQLGGAFGELSAAMQYLFQSFNFR--EDPKYRDLLLDIGTEELSHLEMVATLIAMLLK 82 (156)
T ss_pred HHhCCccHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333445567888877776655542 68999999999999999999999999988776
No 85
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=44.10 E-value=76 Score=31.12 Aligned_cols=32 Identities=9% Similarity=0.203 Sum_probs=28.7
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016050 246 HGDMKLAQICGTIASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 246 ~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 277 (396)
.+.|-.+..++..+.+|++|..+|..+++.+.
T Consensus 75 ~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~ 106 (280)
T cd07911 75 EGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVG 106 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45788899999999999999999999998874
No 86
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=41.91 E-value=85 Score=31.87 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=66.3
Q ss_pred hhhHhhhHhhhhhHHHHHHHHHHHHHhhCC----HHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHHh
Q 016050 219 YLGFIYTSFQERATFISHGNTARLAKEHGD----MKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRK 294 (396)
Q Consensus 219 ~~~~vYtsfQE~AT~ish~ntarla~~~gD----PvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~ 294 (396)
...++..++.|-+.-.||++++++-. .| +...+-.++=.+.|+||-.+-.+++-..=.+||...=......+++
T Consensus 61 ~~~l~~~~itEd~LP~Y~~~L~~~f~--~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~ 138 (297)
T cd01050 61 RVALVGNLLTEEALPTYHSMLNRLFG--LDDESPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGS 138 (297)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHcC--cccccccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Confidence 45888899999999999999999721 24 8899999999999999999988888776677888877777777777
Q ss_pred ccCCCc
Q 016050 295 KISMPA 300 (396)
Q Consensus 295 ~i~MP~ 300 (396)
.|.+|.
T Consensus 139 G~~~~~ 144 (297)
T cd01050 139 GFDPGT 144 (297)
T ss_pred CCCCCC
Confidence 887665
No 87
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=40.62 E-value=61 Score=31.20 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHhhCCHHHHHHHhHhhh--------------hhhHH--HHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016050 230 RATFISHGNTARLAKEHGDMKLAQICGTIAS--------------DEKRH--ETAYTKIVEKLFEIDPDGTIVSFADMMR 293 (396)
Q Consensus 230 ~AT~ish~ntarla~~~gDPvLa~I~~~IAa--------------DE~RH--~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 293 (396)
.+-.-||..+++. +++|+|..+++.|-. ..... ...+.+|++++...||+.+-.++...+.
T Consensus 149 ~aD~~FH~aIa~a---s~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~am~~hl~ 225 (241)
T COG2186 149 EADLAFHLAIAEA---SGNPVLLLLLEALWDLLRRSVRASTLAALARDETVVLEEHRAIVDAIAAGDPDAAREAMRAHLE 225 (241)
T ss_pred HHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHhhchhhcccccchhHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4557789988775 789999999886540 11122 5778899999999999998888777765
No 88
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=40.36 E-value=51 Score=32.05 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=29.6
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHh
Q 016050 246 HGDMKLAQICGTIASDEKRHETAYTKIVEKLFE 278 (396)
Q Consensus 246 ~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le 278 (396)
.+.|-.+..++..+.+|+.|-.+|..+++.+..
T Consensus 74 ~~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~ 106 (288)
T cd01049 74 VQIPEARAFYGFQAFMENIHSESYSYILDTLGK 106 (288)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 358999999999999999999999999988753
No 89
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=40.27 E-value=50 Score=33.21 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=30.6
Q ss_pred HHHHHHHHhh---CCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016050 237 GNTARLAKEH---GDMKLAQICGTIASDEKRHETAYTKIVEKL 276 (396)
Q Consensus 237 ~ntarla~~~---gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 276 (396)
.|++.++... |-|-.+..+...+.+|++|..+|..+++.+
T Consensus 80 ~nl~~~i~~~~~~~~~e~~~~l~~q~~~EaiH~e~Y~~~le~l 122 (311)
T PRK08326 80 LDIQPLISAMAAEGRLEDEMYLTQFAFEEAKHTEAFRRWFDAV 122 (311)
T ss_pred HHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444433 338889999999999999999999999764
No 90
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=39.42 E-value=49 Score=27.10 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=30.4
Q ss_pred HHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHHHhch
Q 016050 333 ILEFLVGRWKVEKLTGLSGEAQKAQDYVCGLPARIRRLEERAQGR 377 (396)
Q Consensus 333 Il~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~ 377 (396)
++-|-..+|+... |||++- ++-|..|..+++|++||.+.=
T Consensus 22 L~lHY~sk~~~~~--gLs~~d---~~~L~~L~~~a~rm~eRI~tL 61 (75)
T PF06667_consen 22 LILHYRSKWKSSQ--GLSEED---EQRLQELYEQAERMEERIETL 61 (75)
T ss_pred HHHHHHHhcccCC--CCCHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888654 998653 567888999999999998754
No 91
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=36.70 E-value=30 Score=34.69 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=48.4
Q ss_pred CHHH--HHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHHhccCCCcccCCCCCcchhhhHHHHHHHHhCCC
Q 016050 248 DMKL--AQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKISMPAHLMYDGRDDNLFEHFSAVAQRLGVY 325 (396)
Q Consensus 248 DPvL--a~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~s~vaqr~GvY 325 (396)
-|.| +-++..|..||..|-..|+.+.+.+.-..+..++..+. ||+. |-+ +..- |
T Consensus 45 AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r---------------~g~~---k~n-~~~n-----~ 100 (265)
T COG3396 45 APTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLR---------------DGRH---KRN-SLFN-----L 100 (265)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHh---------------hhHH---HHH-HHHc-----C
Confidence 4566 45788999999999999999999876444433222221 1211 111 1111 2
Q ss_pred ChhhHHH--HHHHHHhccccccccCC
Q 016050 326 TAKDYAD--ILEFLVGRWKVEKLTGL 349 (396)
Q Consensus 326 t~~dy~d--Il~~ll~~W~v~~l~gL 349 (396)
-.-+|+| |.-+|++.|++..++.|
T Consensus 101 P~~~Wadt~~~~fLvD~~~~~~l~~l 126 (265)
T COG3396 101 PTGDWADTIVRGFLVDGAAIYQLEAL 126 (265)
T ss_pred CCccHHHHHHHHHHHhHHHHHHHHHH
Confidence 3336777 45788999988888654
No 92
>PRK09458 pspB phage shock protein B; Provisional
Probab=35.38 E-value=52 Score=27.13 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=29.1
Q ss_pred HHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHHHhch
Q 016050 334 LEFLVGRWKVEKLTGLSGEAQKAQDYVCGLPARIRRLEERAQGR 377 (396)
Q Consensus 334 l~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~ 377 (396)
+-|-..+|+... |||++ -+.-|..|-.+++|++||++.-
T Consensus 23 ~LHY~sk~~~~~--~Ls~~---d~~~L~~L~~~A~rm~~RI~tL 61 (75)
T PRK09458 23 WLHYRSKRQGSQ--GLSQE---EQQRLAQLTEKAERMRERIQAL 61 (75)
T ss_pred HHhhcccccCCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788775 89965 4456888899999999998754
No 93
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=34.50 E-value=91 Score=29.00 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCc
Q 016050 229 ERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDG 283 (396)
Q Consensus 229 E~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 283 (396)
|.+-.--|+.-... .++|.++..+..++..|.+|...|.+.+.+ +..-|.-
T Consensus 12 E~gA~~IY~gQ~~~---~~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~-~~~rps~ 62 (165)
T cd01042 12 EVGAVRIYRGQLAV---ARDPAVRPLIKEMLDEEKDHLAWFEELLPE-LGVRPSL 62 (165)
T ss_pred hHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCch
Confidence 33333334444443 458999999999999999999999999965 4445544
No 94
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=33.25 E-value=68 Score=26.87 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016050 262 EKRHETAYTKIVEKLFEIDPDGTIVSFADMMR 293 (396)
Q Consensus 262 E~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 293 (396)
|.+|..+|.++... |.+.|+.+...|..|++
T Consensus 9 e~~~~~~f~~~~~~-l~~~~~~~~~~f~~Va~ 39 (100)
T smart00337 9 NKRYERAFSSFSAQ-LHVTPGTAIELFGEVAT 39 (100)
T ss_pred HHHHHHHHHHHHHH-hCCCcccHHHHHHHHHH
Confidence 68899999999888 77789999999999998
No 95
>PRK13456 DNA protection protein DPS; Provisional
Probab=28.39 E-value=5.3e+02 Score=24.66 Aligned_cols=110 Identities=11% Similarity=0.047 Sum_probs=66.9
Q ss_pred hHhhhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHHHHHhcc-CCCcc--
Q 016050 225 TSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKI-SMPAH-- 301 (396)
Q Consensus 225 tsfQE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i-~MP~~-- 301 (396)
..--|..|...|...+..++...-+.++..+..-+.||..|+....+=+.. |.=.|+.-..-+.++...++ .-|..
T Consensus 28 AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~q-LGG~P~~~p~~~~~ls~~~~~~~p~d~t 106 (186)
T PRK13456 28 NAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYE-LGGKLPRDIREFHDISACPDAYLPENPT 106 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCChHHHhhhhcCccccCCCCcc
Confidence 334688899999999998875445666799999999999999887643322 44446655554555443333 22221
Q ss_pred cCCC---C---CcchhhhHHHHHHHHhCCCChhhHHHHHH
Q 016050 302 LMYD---G---RDDNLFEHFSAVAQRLGVYTAKDYADILE 335 (396)
Q Consensus 302 ~m~d---g---~~~~lf~~~s~vaqr~GvYt~~dy~dIl~ 335 (396)
...+ . ......+.|..+++-+|--|+..|.-+++
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~ 146 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALA 146 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 0000 0 01245667777777777666666654444
No 96
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.22 E-value=2.2e+02 Score=34.20 Aligned_cols=104 Identities=17% Similarity=0.261 Sum_probs=69.0
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHH-HHHhccCCCcccCCCCCcchhhhHHHHHHHHhCCCC
Q 016050 248 DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFAD-MMRKKISMPAHLMYDGRDDNLFEHFSAVAQRLGVYT 326 (396)
Q Consensus 248 DPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~-mm~~~i~MP~~~m~dg~~~~lf~~~s~vaqr~GvYt 326 (396)
+.++..+|..|+.-=.--.++=-.+++.+....|...+...-. +|. .+ .+...+.-+|=
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~----------------sl----l~ls~d~k~~~ 885 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLP----------------SL----LALSHDHKIKV 885 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH----------------HH----HHHHHhhhHHH
Confidence 3456777777776544344555566666666666665554332 222 11 22344545565
Q ss_pred hhhHHHHHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHHHhch
Q 016050 327 AKDYADILEFLVGRWKVEKLTGLSGEAQKAQDYVCGLPARIRRLEERAQGR 377 (396)
Q Consensus 327 ~~dy~dIl~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~ 377 (396)
...-..+++.|+++.+++++.++-+ +..+++=.+|||..+|....
T Consensus 886 r~Kvr~LlekLirkfg~~eLe~~~p------ee~~klL~nIRK~r~R~~rK 930 (1176)
T KOG1248|consen 886 RKKVRLLLEKLIRKFGAEELESFLP------EEDMKLLTNIRKRRRRKKRK 930 (1176)
T ss_pred HHHHHHHHHHHHHHhCHHHHHhhCH------HHHHHHHHHHHHHHHHhhhh
Confidence 6666779999999999999999977 67778888999998776543
No 97
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=26.83 E-value=1.3e+02 Score=29.18 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHhhCCCchHHHHHHHHHhcc
Q 016050 262 EKRHETAYTKIVEKLFEIDPDGTIVSFADMMRKKI 296 (396)
Q Consensus 262 E~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~~~i 296 (396)
|.+|..+|.++.+. |.+.|+.+-..|..|+++-|
T Consensus 79 e~~~~~~f~~m~~q-L~it~~~a~~~F~~Va~elF 112 (213)
T TIGR00865 79 ERRYRRAFSDMTSQ-LHITPFTARQSFFQVAAELF 112 (213)
T ss_pred HHHHHHHHHHHHHH-hCCCCccHHHHHHHHHHHHh
Confidence 78999999999998 88889999999999998333
No 98
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=26.68 E-value=4.7e+02 Score=24.48 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=70.3
Q ss_pred hHhHHhhcchhhhhhhhHHHHhH-HhHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHH
Q 016050 164 SWAIWTRAWTAEENRHGDLLNKY-LYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARL 242 (396)
Q Consensus 164 ~W~~Wv~~WTAEEnRHG~aLr~Y-L~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarl 242 (396)
..+.....=.-||-+|+|-|-.= |.+-|--|...+.. ..++ .+.-..+-.----|+.-.-.|++.-..
T Consensus 39 ~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~---------l~iG--~tv~E~L~~DL~~E~~a~~~lk~~i~~ 107 (157)
T COG2193 39 KLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGK---------LRIG--ETVKEMLEADLALEYEARDALKEAIAY 107 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc---------cccC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555567899999977554 46766667666654 2332 233345555555688888888888888
Q ss_pred HHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016050 243 AKEHGDMKLAQICGTIASDEKRHETAYTKIVE 274 (396)
Q Consensus 243 a~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 274 (396)
+.+.+|.|-+.++..|-+||.-|--+--..+.
T Consensus 108 ~e~~~Dyvsrdl~~~iL~deEEHid~LetqL~ 139 (157)
T COG2193 108 CEEVQDYVSRDLLEEILADEEEHIDWLETQLD 139 (157)
T ss_pred HHhcccchHHHHHHHHHcchHHHHHHHHHHHH
Confidence 88889999999999999999998776555443
No 99
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=26.35 E-value=1.1e+02 Score=25.13 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=29.3
Q ss_pred HHHHHHhccccccccCCCHHHHHHHHHHhcchHHHHHHHHHHhch
Q 016050 333 ILEFLVGRWKVEKLTGLSGEAQKAQDYVCGLPARIRRLEERAQGR 377 (396)
Q Consensus 333 Il~~ll~~W~v~~l~gL~~eg~~Ard~l~~l~~r~~r~~er~~~~ 377 (396)
++-|-..+|+... |||++ -++-|..|..+++|++||.+.=
T Consensus 22 l~lHY~~k~~~~~--~ls~~---d~~~L~~L~~~a~rm~eRI~tL 61 (75)
T TIGR02976 22 LILHYRSKRKTAA--SLSTD---DQALLQELYAKADRLEERIDTL 61 (75)
T ss_pred HHHHHHhhhccCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888874 78866 3346777888899999988753
No 100
>PF13668 Ferritin_2: Ferritin-like domain
Probab=26.25 E-value=1.9e+02 Score=24.75 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=26.8
Q ss_pred hCCHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 016050 246 HGDMKLAQICGTIASDEKRHETAYTKIVE 274 (396)
Q Consensus 246 ~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~ 274 (396)
..++....++..|+.+|..|..+.++.++
T Consensus 35 ~~~~~~~~~~~~i~~~E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 35 ALDPEVRDLFQEIADQEQGHVDFLQAALE 63 (137)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999986
No 101
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=25.19 E-value=2.8e+02 Score=22.95 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCchHHHHHH
Q 016050 229 ERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTIVSFAD 290 (396)
Q Consensus 229 E~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~tm~Aia~ 290 (396)
|......|.+.+-..+..+-+.+++.+...+.+|..|..-..+.+.. +...|.....-+.+
T Consensus 11 e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~-lgg~p~~~~~~~~~ 71 (142)
T PF00210_consen 11 ELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAERILM-LGGKPSGSPVEIPE 71 (142)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS-SSTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHHHHhc-CCCCCCCcHHHhhh
Confidence 55566778888887777778999999999999999998877777654 45556665554444
No 102
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=24.78 E-value=1.3e+02 Score=29.09 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016050 228 QERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEKL 276 (396)
Q Consensus 228 QE~AT~ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 276 (396)
.|.+|---|--..=-.+.........++..|+.+|.+|+..-.|++.++
T Consensus 7 lE~atip~YL~a~ySi~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~al 55 (227)
T PF12902_consen 7 LELATIPPYLTALYSIKPGTNEEARNLIRSVAIEEMLHLSLAANLLNAL 55 (227)
T ss_dssp HHHHHHHHHHHHHHHBS-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5777777666333322222234488999999999999999999999875
No 103
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=24.78 E-value=7.5e+02 Score=25.13 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=84.7
Q ss_pred hhhhhhhhHHHHhHH-hHhCCCChHHhHHH----HHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhC
Q 016050 173 TAEENRHGDLLNKYL-YLSGRVDMRQIEKT----IQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHG 247 (396)
Q Consensus 173 TAEEnRHG~aLr~YL-~lsgrvDp~~lE~~----~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~g 247 (396)
.-+|.-||..|-.|+ -+ |.-+.+.+... ..+ .+=|+.+.. +=....+-..|...+-.+.+. .+.+ +-
T Consensus 63 aqDelGHar~ly~~a~~L-G~~r~ed~~a~~r~~~~f--~nl~e~P~~-dwA~tivr~~l~D~~~~~~~~---~L~~-SS 134 (289)
T TIGR02156 63 VQDEAGHGLYLYAAAETL-GVSREELLDALLTGKAKY--SSIFNYPTL-TWADIGVIGWLVDGAAIMNQT---PLCR-CS 134 (289)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCcHHHHHHHhcChHhh--ccchhCCCC-CHHHHHHHHHHHHHHHHHHHH---HHhc-CC
Confidence 456788999999998 44 44222222211 111 111333221 222333333344444444333 4433 66
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCC---chHHHHHHHHHhccCCCcccCCCCCcchhhhHHHHHHHHhCC
Q 016050 248 DMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD---GTIVSFADMMRKKISMPAHLMYDGRDDNLFEHFSAVAQRLGV 324 (396)
Q Consensus 248 DPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd---~tm~Aia~mm~~~i~MP~~~m~dg~~~~lf~~~s~vaqr~Gv 324 (396)
++.|+.|+.+|-+.|.-|..+=.+.|.++-+-.+. .+-.||..+..-...|=| .+|.. ...++.+.+-||
T Consensus 135 y~plA~ia~Ki~KEe~yH~rh~~~wl~rL~~GT~esr~r~Q~Ald~~Wp~~~emFg--~~d~e-----~~~~~~~~~~Gi 207 (289)
T TIGR02156 135 YGPYSRAMVRICKEESFHQRQGYEIMLTLARGTQEQRQMAQDALNRWWWPSLMMFG--PHDAD-----SPNSGQSTKWKI 207 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcC--CCchh-----hhhHHHHHhCCC
Confidence 99999999999999999999999999998653322 244466666652222211 11111 112444555666
Q ss_pred C--Chhh----HHHHHHHHHhcccc
Q 016050 325 Y--TAKD----YADILEFLVGRWKV 343 (396)
Q Consensus 325 Y--t~~d----y~dIl~~ll~~W~v 343 (396)
- +..+ +.+.+.+++..-++
T Consensus 208 ~~~~n~eLR~~w~~~v~~~l~~agL 232 (289)
T TIGR02156 208 KRNSNDELRQKFIDATVPQLESLGL 232 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 6 4433 55666666665544
No 104
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=24.58 E-value=57 Score=32.29 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=17.7
Q ss_pred hHhhhhhhHHHHHHHHHHHHH
Q 016050 256 GTIASDEKRHETAYTKIVEKL 276 (396)
Q Consensus 256 ~~IAaDE~RH~~~Y~~iv~~~ 276 (396)
-++|.||.||+..+.+-++++
T Consensus 105 ~~va~dEarHf~ll~~rL~~l 125 (253)
T PF04305_consen 105 LRVADDEARHFRLLRERLEEL 125 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999988654
No 105
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=24.41 E-value=1.3e+02 Score=29.59 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=23.1
Q ss_pred CHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 016050 248 DMKLAQICGTIASDEKRHETAYTKIVEKLF 277 (396)
Q Consensus 248 DPvLa~I~~~IAaDE~RH~~~Y~~iv~~~l 277 (396)
+....+-+-....||.+|...|.++++++-
T Consensus 111 ~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~ 140 (304)
T PF11583_consen 111 DDDAKRYALTEIADEARHSLMFARAINRTG 140 (304)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777899999999999998877
No 106
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=22.23 E-value=1.8e+02 Score=23.68 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 016050 262 EKRHETAYTKIVEKLFEIDPDGTIVSFADMMR 293 (396)
Q Consensus 262 E~RH~~~Y~~iv~~~le~dPd~tm~Aia~mm~ 293 (396)
|.+|..+|.++++.+.-..|+.+...|..++.
T Consensus 9 e~~~~~~f~~~~~~l~~~~~~~~~~~f~~v~~ 40 (101)
T PF00452_consen 9 ERKYEDFFENMLNQLNINTPDNAYETFNEVAE 40 (101)
T ss_dssp HHHHHHHHHHHHHHHCSSSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 56677777777777665566666777777776
No 107
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=22.01 E-value=8.3e+02 Score=24.69 Aligned_cols=115 Identities=14% Similarity=0.032 Sum_probs=78.2
Q ss_pred hhhhhhhhHHHHhHH-hHhCCCChHHhHHH---HHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHHHHHHHHhhCC
Q 016050 173 TAEENRHGDLLNKYL-YLSGRVDMRQIEKT---IQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGD 248 (396)
Q Consensus 173 TAEEnRHG~aLr~YL-~lsgrvDp~~lE~~---~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~ntarla~~~gD 248 (396)
.-.|-.||..|=.++ -+-|.-+-+.+... ++..-. =|+.++. +=..+.+.+.|.+.+--..-.++.+ +-.
T Consensus 58 vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g~~k~n~-~~n~P~~-~Wadt~~~~fLvD~~~~~~l~~l~~----ssy 131 (265)
T COG3396 58 VQDEMGHGWLLYRLAEELEGKGREDDLAYLRDGRHKRNS-LFNLPTG-DWADTIVRGFLVDGAAIYQLEALAD----SSY 131 (265)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhhHHHHHH-HHcCCCc-cHHHHHHHHHHHhHHHHHHHHHHHh----ccc
Confidence 446788999988888 33233332333322 221111 2333332 4456888889999988887777766 568
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCC---chHHHHHHHHH
Q 016050 249 MKLAQICGTIASDEKRHETAYTKIVEKLFEIDPD---GTIVSFADMMR 293 (396)
Q Consensus 249 PvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd---~tm~Aia~mm~ 293 (396)
+-|++|..+|-+-|.-|-.|=++.+.++-+=.+. -+..||-+...
T Consensus 132 ~PlA~~a~k~~kEe~fHl~~~~~~l~~l~~gT~~~~~~~Q~AlN~wwp 179 (265)
T COG3396 132 GPLARAAQKICKEEEFHLRHGKTWLKRLANGTEESRQMAQAALNRWWP 179 (265)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877664 33456655554
No 108
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=21.84 E-value=1.7e+02 Score=30.23 Aligned_cols=38 Identities=29% Similarity=0.204 Sum_probs=32.6
Q ss_pred hhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHHHhhCCCc
Q 016050 245 EHGDMKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDG 283 (396)
Q Consensus 245 ~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~le~dPd~ 283 (396)
....|-++..++..+..|+.|-.+|..+++.+. .+++.
T Consensus 124 ~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~-~~~~e 161 (369)
T PRK07209 124 HITNPECRQYLLRQAFEEAIHTHAYQYIVESLG-LDEGE 161 (369)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHH
Confidence 455899999999999999999999999999883 45554
No 109
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=21.34 E-value=5.2e+02 Score=24.19 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=48.1
Q ss_pred hhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCCCCCCCchhhHhhhHhhhhhHHHHHHH-----------HH--
Q 016050 174 AEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGN-----------TA-- 240 (396)
Q Consensus 174 AEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~~~~vYtsfQE~AT~ish~n-----------ta-- 240 (396)
.-|.+|=+++..-+---|-.||.. +...|...+|-..=.|..+.+.+..+--.+ +.
T Consensus 36 ~SEq~Hmdav~~Ll~kY~l~dP~~-----------~~~~G~f~~~~lq~LY~~Lv~~G~~S~~dAl~vga~iEe~dI~DL 104 (162)
T PF09968_consen 36 RSEQRHMDAVKALLEKYGLEDPVE-----------GDPVGVFTNPELQELYNQLVEQGSKSLEDALKVGALIEELDIADL 104 (162)
T ss_dssp HHHHHHHHHHHHHHHHTT---S-S-----------S-STT--SSHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCc-----------cCCCCCcCcHHHHHHHHHHHHHhhhcHHHHHHHhHHHHHhhHHHH
Confidence 368999888766553333334432 333344445555566666666555542222 22
Q ss_pred -HHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 241 -RLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 241 -rla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
+....++++-+..+...+-.==..|..+|.+.++.
T Consensus 105 ~~~l~~t~~~Di~~Vy~nL~~gS~NHLrAF~r~L~~ 140 (162)
T PF09968_consen 105 EEALARTDNEDIKTVYENLRRGSRNHLRAFVRQLER 140 (162)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334667778887777765555788888877754
No 110
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=21.27 E-value=6.9e+02 Score=23.48 Aligned_cols=105 Identities=19% Similarity=0.268 Sum_probs=60.9
Q ss_pred HHhhcchhhhhhhhHHHHhHHhHhCCCChHHhHHHHHHHhhcCCCCCCCCCch--hhHhhhHhh-hhhHHHHHHHHHHHH
Q 016050 167 IWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPY--LGFIYTSFQ-ERATFISHGNTARLA 243 (396)
Q Consensus 167 ~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE~~~~~li~~G~d~~~~~~p~--~~~vYtsfQ-E~AT~ish~ntarla 243 (396)
.+...=.-|...|..+|..=+|--|.-=|+.+-+ .....++.+.+- .++|+ .+++-..+- |+..---|.-+-.+
T Consensus 53 eiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~-l~dISgC~~a~L-Pedp~D~~~~l~vlv~AE~CAir~ykeic~~- 129 (172)
T COG2406 53 EIAEEAREEDRKHFELIAPRIYELGGDLPRDMKK-LHDISGCKPAYL-PEDPYDIDEILAVLVKAERCAIRAYKEICNL- 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHH-HHhhcCCCCCCC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 3433333455679999999887655443333332 222333333332 34565 344444433 22222224433333
Q ss_pred HhhC-CHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 244 KEHG-DMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 244 ~~~g-DPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
.+| ||.--.+...|-.||.+|...|.+++.+
T Consensus 130 -T~GkDprTyeLa~~IL~eEi~hr~~~~~ll~~ 161 (172)
T COG2406 130 -TAGKDPRTYELAEAILREEIEHRTWFLELLGK 161 (172)
T ss_pred -ccCCCcchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233 9999999999999999999999988753
No 111
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=21.07 E-value=2.2e+02 Score=25.77 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=61.9
Q ss_pred HhHHhhcchhhhhhhhHHHHhHHhHhCCCChHHhH--------HHHHHHhhcCCCCCCCCCchhhHh---hhHhhhhhHH
Q 016050 165 WAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIE--------KTIQYLIGSGMDPRTENSPYLGFI---YTSFQERATF 233 (396)
Q Consensus 165 W~~Wv~~WTAEEnRHG~aLr~YL~lsgrvDp~~lE--------~~~~~li~~G~d~~~~~~p~~~~v---YtsfQE~AT~ 233 (396)
...=+..=-.|-.+|-.-|..-+-.-| .+|.... ...+.++.. +.. ++.+.... ...-.|.=--
T Consensus 36 L~~~l~~h~~eT~~q~~rLe~~~~~lg-~~p~~~~c~~~~gl~~e~~~~~~~-~~~---d~~~~D~~li~a~q~~ehyeI 110 (159)
T PF05974_consen 36 LKAALEEHLEETEQQIERLEQIFEALG-ADPSAEKCDAMEGLVAEAQELIEE-FAE---DPAVKDAALIAAAQKVEHYEI 110 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-S-S-CHH-HHHHHHHHHHHHHHHT--S----SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCccCcchHHHHHHHHHHHHHhc-ccC---CchHhhHHHHHHHHHHHHHHH
Confidence 333333444556677777777664433 3444433 222222221 111 12233222 2333344445
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 016050 234 ISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYTKIVEK 275 (396)
Q Consensus 234 ish~ntarla~~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~ 275 (396)
-+|+.+..+|+..|++-.+++|...-.+|...-...+.+...
T Consensus 111 A~Y~tL~~~A~~lG~~e~a~lL~~~L~EE~~~~~~L~~~a~~ 152 (159)
T PF05974_consen 111 AAYGTLIALAKQLGDEEAAQLLEQNLDEEEAADEKLTQLAES 152 (159)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999999888887754
No 112
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=20.94 E-value=1.6e+02 Score=29.59 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=28.8
Q ss_pred hhCCHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 016050 245 EHGDMKLAQICGTIASDEKRHETAYTKIVEKL 276 (396)
Q Consensus 245 ~~gDPvLa~I~~~IAaDE~RH~~~Y~~iv~~~ 276 (396)
...+|-.+..++.++..|+.|..+|..+++.+
T Consensus 84 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl 115 (324)
T PRK09614 84 DITTPEEEAVLANIAFMEAVHAKSYSYIFSTL 115 (324)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35589999999999999999999999999975
No 113
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=20.32 E-value=3.1e+02 Score=26.02 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHhHhhhh----------------hh--HHHHHHHHHHHHHHhhCCCchHHHHHHHH
Q 016050 231 ATFISHGNTARLAKEHGDMKLAQICGTIASD----------------EK--RHETAYTKIVEKLFEIDPDGTIVSFADMM 292 (396)
Q Consensus 231 AT~ish~ntarla~~~gDPvLa~I~~~IAaD----------------E~--RH~~~Y~~iv~~~le~dPd~tm~Aia~mm 292 (396)
+-.-||.-+.+. +|.|.|..++..+..- +. .-.....+|++++-..|++.+..++...+
T Consensus 141 ~d~~FH~~i~~~---s~N~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~I~~AI~~~D~~~A~~~~~~H~ 217 (253)
T PRK10421 141 ADVRFHLAIAEA---SHNVVLLQTMRGFFDVLQSSVKQSRQRMYLVPPVFSQLTEQHQAVMDAILAGDAEGARKAMMAHL 217 (253)
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456789877664 7899988877655321 11 11345777888888888887777766655
Q ss_pred H
Q 016050 293 R 293 (396)
Q Consensus 293 ~ 293 (396)
.
T Consensus 218 ~ 218 (253)
T PRK10421 218 S 218 (253)
T ss_pred H
Confidence 4
Done!