BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016051
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
pdb|2BZ0|B Chain B, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In
Complex With Gtp Analogue, Gmpcpp, And Zinc
Length = 196
Score = 177 bits (450), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/188 (48%), Positives = 119/188 (63%), Gaps = 1/188 (0%)
Query: 178 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 237
A A +PT WG F + L G +H+A+V G+I +L RVHSECLTGD S RCD
Sbjct: 7 AEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD 66
Query: 238 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 297
CG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G+DTVEAN +LG
Sbjct: 67 CGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA 125
Query: 298 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 357
D R++ + A + + LGV ++L+TNNP K L G+ I R+PL+ N+ YL+T
Sbjct: 126 DERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDT 185
Query: 358 KRAKMGHV 365
K KMGH+
Sbjct: 186 KAEKMGHL 193
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
pdb|3H07|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase From Yersinia Pestis Co92
Length = 220
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
Query: 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAK 60
AA +T E MA +RHG+GIVC+ + E ++L+LP+MV H N + TAFTV+++A
Sbjct: 48 FAAEAMTLEQMALTIRHGSGIVCLCITDERRQQLDLPMMVTH--NSSQFQTAFTVTIEAA 105
Query: 61 YGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAV 120
G TTGVSA DR T+ ++KP D NRPGH+FPL+ + GGVL R GHTEAS+DLA
Sbjct: 106 EGVTTGVSAADRLTTIRKAIADNAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLAT 165
Query: 121 LAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKR 170
LAG +P VLCE+ +DDGSMA P++ FA+ ++ +++I DL Y + R
Sbjct: 166 LAGYKPAGVLCELTNDDGSMAHAPEVIAFAKLHDMPVVTIDDLAAYLQSR 215
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G57|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase
pdb|1G58|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
pdb|1G58|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Gold Derivative
Length = 217
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
Query: 3 ASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYG 62
A +T E MA +RHG+GIVC+ + + ++L+LP+MV ++N T FTV+++A G
Sbjct: 47 AETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEG 104
Query: 63 TTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLA 122
TTGVSA DR TV A +KP D NRPGH+FPL+ + GGVL R GHTEA++DL LA
Sbjct: 105 VTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLA 164
Query: 123 GLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 172
G +P VLCE+ +DDG+MAR P+ +FA N+ +++I DL+ YR+ +R
Sbjct: 165 GFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHER 214
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Riboflavin Biosynthesis
Length = 217
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
Query: 3 ASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYG 62
A +T E MA +RHG+GIVC+ + + ++L+LP+MV ++N T FTV+++A G
Sbjct: 47 AETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEG 104
Query: 63 TTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLA 122
TTGVSA DR TV A +KP D NRPGH+FPL+ + GGVL R GHTEA++DL LA
Sbjct: 105 VTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLA 164
Query: 123 GLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 172
G +P VLCE+ +DDG+MAR P+ +FA N+ +++I DL+ YR+ +R
Sbjct: 165 GFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHER 214
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii
Length = 196
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 117/188 (62%), Gaps = 1/188 (0%)
Query: 178 AAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 237
A A +PT WG F + L G +H+A+V G+I +L RVHSECLTGD S RCD
Sbjct: 7 AEAKLPTPWGDFLXVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD 66
Query: 238 CGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPV 297
CG QL A+ QI GRG+L+Y R EGR IGL +K+RAY LQD G+DTVEAN +LG
Sbjct: 67 CGFQLEAALTQIAEEGRGILLYHR-QEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAA 125
Query: 298 DSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLET 357
D R++ + A + LGV ++L+TNNP K L G+ I R+PL+ N+ YL+T
Sbjct: 126 DERDFTLCADXFKLLGVNEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDT 185
Query: 358 KRAKMGHV 365
K K GH+
Sbjct: 186 KAEKXGHL 193
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LQU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Complexed With Ribulose-5 Phosphate
pdb|3LRJ|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|C Chain C, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LRJ|D Chain D, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate Ion.
pdb|3LS6|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
pdb|3LS6|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Sulfate And Zinc
Length = 217
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 115/170 (67%), Gaps = 2/170 (1%)
Query: 3 ASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYG 62
A +T E MA +RHG+GIVC+ + + ++L+LP+MV ++N T FTV+++A G
Sbjct: 47 AETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEG 104
Query: 63 TTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLA 122
TTGVSA DR TV A +KP D NRPGH+FPL+ + GGVL R GHTEA++DL LA
Sbjct: 105 VTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLA 164
Query: 123 GLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDR 172
G +P VLCE+ +DDG+MAR P+ FA N+ +++I DL+ YR+ +R
Sbjct: 165 GFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAHER 214
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis With
Sulfate And Zinc At Ph 4.00
Length = 212
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 119/173 (68%), Gaps = 4/173 (2%)
Query: 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAK 60
AA TPE +AF+VR+ +G +CV + G +RL L M + N++K TA+TV+VDA+
Sbjct: 42 FAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPM--YAVNQDKHGTAYTVTVDAR 99
Query: 61 YGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAV 120
G TG+SA+DRA T+ LA S +DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA
Sbjct: 100 NGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLAR 159
Query: 121 LAGLEPVAVLCEIVD--DDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 171
+AGL+P +CEIV D+GSMA +LR FA L +I+IADLI +RRK +
Sbjct: 160 MAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 212
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional
DhbpsGTP Cyclohydrolase Ii From Mycobacterium
Tuberculosis At Ph 4.0
pdb|3MIO|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
pdb|3MIO|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Domain From Mycobacterium Tuberculosis At Ph
6.00
Length = 206
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 119/173 (68%), Gaps = 4/173 (2%)
Query: 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAK 60
AA TPE +AF+VR+ +G +CV + G +RL L M + N++K TA+TV+VDA+
Sbjct: 36 FAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPM--YAVNQDKHGTAYTVTVDAR 93
Query: 61 YGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAV 120
G TG+SA+DRA T+ LA S +DF RPGH+ PL+ ++GGVL+R GHTEA+VDLA
Sbjct: 94 NGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLAR 153
Query: 121 LAGLEPVAVLCEIVD--DDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD 171
+AGL+P +CEIV D+GSMA +LR FA L +I+IADLI +RRK +
Sbjct: 154 MAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE 206
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKS|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans
pdb|1TKU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|1TKU|B Chain B, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans In Complex With
Ribulose-5-Phosphate
pdb|2RIS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase Of Candida Albicans- Alternate Interpretation
pdb|2RIU|A Chain A, Alternative Models For Two Crystal Structures Of Candida
Albicans 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase-
Alternate Interpreation
Length = 204
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 114/170 (67%), Gaps = 3/170 (1%)
Query: 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAK 60
MAA L+T E MAF+VR+ +G VCV + E +LELP M+ ++ + TA+T++ D
Sbjct: 37 MAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRSDRHG--TAYTITCDFA 94
Query: 61 YGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAV 120
GTTTG+SA+DRA T +LA +SKP+DF +PGHI PL+ G + KR GHTEA+V L+
Sbjct: 95 EGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLST 154
Query: 121 LAGLEPVAVLCEIV-DDDGSMARLPKLRQFAQTENLKIISIADLIRYRRK 169
LAGL+P V+CE+V D+DG M RL QF + +KII+I L+ Y K
Sbjct: 155 LAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK 204
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase (Cation Free Form)
pdb|1K4I|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Magnesium Ions
pdb|1K4L|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Two Manganese Ions
pdb|1K4O|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With One Manganese, And A Glycerol
pdb|1K4P|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate
Synthase In Complex With Zinc Ions
Length = 233
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 111/187 (59%), Gaps = 14/187 (7%)
Query: 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAK 60
+AA VT E MAF+VRH +G++C + E L+LP MV H N + TA+TVSVDA+
Sbjct: 44 IAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTH--NADPRGTAYTVSVDAE 101
Query: 61 Y-GTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLA 119
+ TTTG+SA+DRA LA D++P F RPGH+FPL+ GGV R GHTEA V+L
Sbjct: 102 HPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELC 161
Query: 120 VLAGLEPVAVLCEIVDDDGS-----------MARLPKLRQFAQTENLKIISIADLIRYRR 168
LAG PVAV+ EIVDD M R + FA+ LK+ +I D+I +
Sbjct: 162 RLAGKRPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVE 221
Query: 169 KRDRLVE 175
K + +E
Sbjct: 222 KTEGKLE 228
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 101/190 (53%), Gaps = 27/190 (14%)
Query: 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMV------------------NH 42
+A+ +TPE + + + G++C ++ + +L +P MV N
Sbjct: 33 VASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQKFKVLRELYPND 92
Query: 43 KDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA--CRDSKPEDFNR----PGHIF 96
+EK ++F+++++ + T TG++ NDRA T+ LA ++ + DF + PGH+
Sbjct: 93 IPYDEK--SSFSITINHR-KTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGHVT 149
Query: 97 PLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLK 156
L+ EG V R GHTE +V LA LA L P+ +CE++ DDG+ + +++A+ NL
Sbjct: 150 LLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLI 209
Query: 157 IISIADLIRY 166
+S ++I Y
Sbjct: 210 YLSGEEIINY 219
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 100/190 (52%), Gaps = 27/190 (14%)
Query: 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMV------------------NH 42
+A+ +TPE + + + G++C ++ + +L +P MV N
Sbjct: 33 VASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQKFKVLRELYPND 92
Query: 43 KDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA--CRDSKPEDFNR----PGHIF 96
+EK ++F+++++ + T TG++ NDRA T+ LA ++ + DF + PG +
Sbjct: 93 IPYDEK--SSFSITINHR-KTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVT 149
Query: 97 PLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLK 156
L+ EG V R GHTE +V LA LA L P+ +CE++ DDG+ + +++A+ NL
Sbjct: 150 LLRAAEGLVKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLI 209
Query: 157 IISIADLIRY 166
+S ++I Y
Sbjct: 210 YLSGEEIINY 219
>pdb|2D4Y|A Chain A, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
pdb|2D4Y|B Chain B, Crystal Structure Of A 49k Fragment Of Hap1 (Flgk)
Length = 463
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 10 AMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSA 69
A AF +H G KG+D + P++ ++ +N +K TVS+ AK +T V A
Sbjct: 242 ADAFNAQHTKGYDADGNKGKDFFSIGSPVVYSNSNNADK-----TVSLTAKVVDSTKVQA 296
Query: 70 ND 71
D
Sbjct: 297 TD 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,010,834
Number of Sequences: 62578
Number of extensions: 463384
Number of successful extensions: 1102
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 15
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)