Query 016051
Match_columns 396
No_of_seqs 210 out of 1549
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02831 Bifunctional GTP cycl 100.0 2E-126 5E-131 975.4 38.0 381 1-381 67-448 (450)
2 PRK09319 bifunctional 3,4-dihy 100.0 1E-126 2E-131 989.5 36.1 368 1-371 37-408 (555)
3 PRK09311 bifunctional 3,4-dihy 100.0 3E-125 6E-130 958.5 35.5 366 1-368 36-401 (402)
4 PRK09318 bifunctional 3,4-dihy 100.0 8E-125 2E-129 948.3 32.6 355 1-369 29-383 (387)
5 PRK12485 bifunctional 3,4-dihy 100.0 2E-113 3E-118 862.6 33.2 333 1-344 35-368 (369)
6 PRK14019 bifunctional 3,4-dihy 100.0 2E-110 4E-115 841.2 32.9 331 1-344 35-365 (367)
7 PRK09314 bifunctional 3,4-dihy 100.0 4E-107 9E-112 806.0 30.5 304 1-343 35-339 (339)
8 PRK08815 GTP cyclohydrolase; P 100.0 3E-102 7E-107 782.8 29.6 322 1-370 46-369 (375)
9 COG0807 RibA GTP cyclohydrolas 100.0 6.8E-70 1.5E-74 502.7 17.3 192 173-366 2-193 (193)
10 COG0108 RibB 3,4-dihydroxy-2-b 100.0 9.3E-68 2E-72 487.7 17.6 168 1-171 35-202 (203)
11 PRK00910 ribB 3,4-dihydroxy-2- 100.0 8.9E-65 1.9E-69 476.4 18.0 169 1-171 46-214 (218)
12 PRK01792 ribB 3,4-dihydroxy-2- 100.0 1.7E-64 3.6E-69 473.4 18.5 168 1-170 45-212 (214)
13 PRK00014 ribB 3,4-dihydroxy-2- 100.0 2.2E-63 4.8E-68 469.0 18.5 170 1-172 50-219 (230)
14 PF00926 DHBP_synthase: 3,4-di 100.0 1.9E-63 4.1E-68 461.8 13.3 165 1-167 30-194 (194)
15 TIGR00506 ribB 3,4-dihydroxy-2 100.0 2.3E-62 5E-67 455.7 17.5 165 1-167 34-199 (199)
16 PRK00393 ribA GTP cyclohydrola 100.0 1.1E-60 2.4E-65 445.1 18.0 196 173-369 2-197 (197)
17 TIGR00505 ribA GTP cyclohydrol 100.0 1.3E-59 2.7E-64 436.0 17.7 191 175-366 1-191 (191)
18 PRK03353 ribB 3,4-dihydroxy-2- 100.0 5.5E-59 1.2E-63 439.0 18.5 169 1-171 45-213 (217)
19 PF00925 GTP_cyclohydro2: GTP 100.0 3.7E-59 8E-64 425.2 11.4 169 174-343 1-169 (169)
20 PRK05773 3,4-dihydroxy-2-butan 100.0 1.5E-57 3.3E-62 428.3 16.6 163 1-167 32-217 (219)
21 cd00641 GTP_cyclohydro2 GTP cy 100.0 1.8E-56 4E-61 415.3 17.3 193 173-366 1-193 (193)
22 KOG1284 Bifunctional GTP cyclo 100.0 1.1E-55 2.5E-60 431.4 9.0 260 1-260 95-357 (357)
23 PRK07198 hypothetical protein; 100.0 4.6E-42 9.9E-47 343.2 13.1 249 93-360 109-394 (418)
24 KOG1284 Bifunctional GTP cyclo 99.7 2.1E-18 4.5E-23 170.0 2.5 191 178-370 66-325 (357)
25 TIGR02361 dak_ATP dihydroxyace 83.1 3.3 7.3E-05 45.2 7.2 88 192-315 33-125 (574)
26 PRK14481 dihydroxyacetone kina 81.3 4.7 0.0001 41.2 7.1 87 193-316 36-127 (331)
27 TIGR02363 dhaK1 dihydroxyaceto 80.7 5.1 0.00011 40.9 7.1 88 192-315 35-127 (329)
28 PRK11468 dihydroxyacetone kina 78.4 7.1 0.00015 40.3 7.3 87 193-315 35-126 (356)
29 TIGR02362 dhaK1b probable dihy 77.3 6.8 0.00015 40.0 6.8 86 193-315 33-123 (326)
30 PF02733 Dak1: Dak1 domain; I 77.3 2 4.3E-05 43.7 3.0 86 193-315 20-110 (325)
31 PRK14483 DhaKLM operon coactiv 75.5 8.7 0.00019 39.2 7.0 86 193-315 35-125 (329)
32 PRK14479 dihydroxyacetone kina 71.7 9.3 0.0002 41.8 6.6 87 192-315 34-125 (568)
33 PTZ00375 dihydroxyacetone kina 71.1 11 0.00024 41.4 6.9 87 192-315 37-128 (584)
34 PF13344 Hydrolase_6: Haloacid 55.5 3.5 7.6E-05 34.4 -0.3 51 305-358 22-77 (101)
35 KOG2426 Dihydroxyacetone kinas 52.5 69 0.0015 34.6 8.5 94 186-320 31-133 (582)
36 PF13420 Acetyltransf_4: Acety 50.7 25 0.00055 30.0 4.4 37 306-342 102-141 (155)
37 PF00332 Glyco_hydro_17: Glyco 44.8 16 0.00035 36.8 2.5 39 304-342 17-55 (310)
38 COG0223 Fmt Methionyl-tRNA for 43.9 52 0.0011 33.4 5.9 135 114-251 13-174 (307)
39 PF07905 PucR: Purine cataboli 39.3 99 0.0021 26.5 6.3 77 85-167 35-112 (123)
40 PF13263 PHP_C: PHP-associated 37.5 23 0.00049 26.4 1.7 20 144-163 5-24 (56)
41 COG3473 Maleate cis-trans isom 36.4 35 0.00076 33.1 3.2 58 304-361 108-176 (238)
42 TIGR02990 ectoine_eutA ectoine 35.6 1.1E+02 0.0023 29.8 6.5 93 240-345 57-156 (239)
43 PRK14719 bifunctional RNAse/5- 34.1 55 0.0012 33.8 4.4 52 304-357 57-116 (360)
44 KOG3009 Predicted carbohydrate 30.8 73 0.0016 34.4 4.7 122 17-161 82-204 (614)
45 cd03109 DTBS Dethiobiotin synt 30.1 1E+02 0.0023 26.6 5.0 51 108-159 81-131 (134)
46 COG4130 Predicted sugar epimer 30.1 94 0.002 30.5 4.9 58 113-174 20-82 (272)
47 PLN02398 hydroxyacylglutathion 28.2 6.5E+02 0.014 25.7 11.0 141 105-265 101-246 (329)
48 PRK11320 prpB 2-methylisocitra 27.6 6.2E+02 0.014 25.4 10.5 70 20-92 37-118 (292)
49 PF05198 IF3_N: Translation in 27.3 60 0.0013 26.1 2.7 32 130-161 14-48 (76)
50 PF08369 PCP_red: Proto-chloro 26.9 92 0.002 22.6 3.3 23 143-165 21-43 (45)
51 cd02169 Citrate_lyase_ligase C 25.5 1.5E+02 0.0033 29.7 5.7 74 258-360 31-108 (297)
52 PF00107 ADH_zinc_N: Zinc-bind 25.3 34 0.00073 28.5 1.0 33 304-337 5-37 (130)
53 PTZ00330 acetyltransferase; Pr 24.5 69 0.0015 26.9 2.8 54 258-340 88-141 (147)
54 PF14490 HHH_4: Helix-hairpin- 23.1 17 0.00037 29.9 -1.2 63 303-365 23-93 (94)
55 TIGR01822 2am3keto_CoA 2-amino 22.5 1.7E+02 0.0036 29.3 5.5 34 125-158 170-204 (393)
56 PRK07505 hypothetical protein; 22.5 96 0.0021 31.5 3.8 38 125-163 180-217 (402)
57 COG0461 PyrE Orotate phosphori 22.2 2.1E+02 0.0045 27.4 5.7 49 114-169 130-181 (201)
58 PRK06939 2-amino-3-ketobutyrat 21.8 1.7E+02 0.0036 29.1 5.3 38 125-163 174-212 (397)
59 PF13344 Hydrolase_6: Haloacid 21.4 1.4E+02 0.0031 24.6 4.0 81 242-336 19-101 (101)
60 PLN02880 tyrosine decarboxylas 20.6 1.8E+02 0.004 31.0 5.6 52 106-157 220-272 (490)
61 PRK13016 dihydroxy-acid dehydr 20.3 2.9E+02 0.0063 30.6 7.0 105 191-336 366-484 (577)
62 PLN02706 glucosamine 6-phospha 20.0 1.2E+02 0.0025 25.8 3.3 52 258-338 91-142 (150)
No 1
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=100.00 E-value=2.1e-126 Score=975.44 Aligned_cols=381 Identities=83% Similarity=1.290 Sum_probs=370.3
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+|||++|||.||||++|++|+||+||++++|++|+||+|+....|++.++|+|||||||++|++|||||.|||+|||.||
T Consensus 67 ~aAe~~t~e~v~fm~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~la 146 (450)
T PLN02831 67 MAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALA 146 (450)
T ss_pred EEchhCCHHHHHHHHHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999998555777788999999999989999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecC-CCcccChhHHHHHHHhCCCcEEe
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIIS 159 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~-dg~~a~~~~l~~fA~~h~L~~it 159 (396)
+|+++|+||++|||||||+|++|||++|+|||||||||||||||.|+||||||+++ ||+|++.+++.+||++|+||+++
T Consensus 147 d~~~~~~df~~PGHvfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~ 226 (450)
T PLN02831 147 SPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIIS 226 (450)
T ss_pred CcCCChhhcCCCCcccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999995 89999999999999999999999
Q ss_pred HhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCCh
Q 016051 160 IADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCG 239 (396)
Q Consensus 160 i~dLi~yr~~~e~lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~ 239 (396)
|+|||+||..+|++|+++++.+|||.||+|++++|++..++.||+||++|++.+++||||||||+|+|||+|||.+|||+
T Consensus 227 i~dli~yr~~~e~lV~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg 306 (450)
T PLN02831 227 IADLIRYRRKREKLVERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCG 306 (450)
T ss_pred HHHHHHHHhhccccccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEeCCcCCCCCceEEEeccCCHHHHhcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeee
Q 016051 240 NQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKL 319 (396)
Q Consensus 240 ~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irL 319 (396)
|||++||++|+++|+||||||++||||||||.||+++|.+|++|+||++||..+|++.|.|+||+|||||++|||++|||
T Consensus 307 ~qL~~Al~~I~~~G~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~dLGI~~irL 386 (450)
T PLN02831 307 NQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMRL 386 (450)
T ss_pred chHHHHHHHHHHcCCEEEEEEcCCCcccchHHHHHHHHhcccccCcchhhhhhccCcccceehHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccccCCcEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCCcCCC
Q 016051 320 MTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSISDD 381 (396)
Q Consensus 320 LTNnP~K~~aL~~~Gi~V~e~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~~~~~~~~~~~~ 381 (396)
|||||+|+.+|++|||+|++++|+++.++++|++||+||++||||+|..+.+++..+.-+-.
T Consensus 387 LTNNp~K~~~L~~~GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~~~~~~~~~~~~ 448 (450)
T PLN02831 387 MTNNPAKYTGLKGYGLAVVGRVPLLTPITKENKRYLETKRTKMGHVYGSDLGGHVSGLESAE 448 (450)
T ss_pred CCCCHHHHHHHhhCCCEEEEEecccCCCChhhHHHHHHHHHHhCCcCCCCCCCccccccccC
Confidence 99999999999999999999999999999999999999999999999999988877765443
No 2
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=100.00 E-value=1.1e-126 Score=989.51 Aligned_cols=368 Identities=56% Similarity=0.939 Sum_probs=359.5
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeecc--CCCCCCCChhHHHHHHHH
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAK--YGTTTGVSANDRAKTVLA 78 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~--~g~~TGISa~DRa~Tir~ 78 (396)
+|||++||+.||||++|++|+||+||++++|++|+||+|+.. |++.++|+|||||||+ .|++|||||.|||+|||+
T Consensus 37 ~aAE~~T~e~infm~r~a~GliClamt~~ra~~L~Lp~Mv~~--n~~~~~taFtVsVDa~~~~g~tTGISA~DRa~TIr~ 114 (555)
T PRK09319 37 CAAQFATPEMINFMATEARGLICLAMTGERLDELDLPLMVDR--NTDSNQTAFTVSIDAGPELGVSTGISAEDRARTIQV 114 (555)
T ss_pred EEhhhCCHHHHHHHHHhcCCCeeeccCHHHHhhcCCCccccc--CCCCCCceEEEEEeccccCCCCCCcCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999987 8888899999999987 599999999999999999
Q ss_pred HhcCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEE
Q 016051 79 LACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKII 158 (396)
Q Consensus 79 la~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~i 158 (396)
||+|+++|.||+||||||||+|++|||++|+||||||||||||||+.|+||||||+++||+||+++++.+||++|+|++|
T Consensus 115 ladp~~~~~Df~rPGHvfPL~A~~GGvl~R~GHTEAAVDLarLAGL~PaaVicEi~~~dG~mar~~~l~~fA~~h~L~ii 194 (555)
T PRK09319 115 AINPDTKPEDLRRPGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPELKEYAKQHGLKLI 194 (555)
T ss_pred HhCCCCChhhcCCCCCccceeeccCCCCCCCChHHHHHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHHHHcCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eHhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCC--CCcceEEeCcCccchhhcCCCCC
Q 016051 159 SIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGD--GQDILVRVHSECLTGDIFGSARC 236 (396)
Q Consensus 159 ti~dLi~yr~~~e~lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~--~~~vlVRVHs~cltgDvfgs~~C 236 (396)
+|+|||+||..+|++|+++++++|||.||+|++++|++..++.||+|||+|++.. ++||||||||+|+|||+|||.+|
T Consensus 195 si~dLi~yR~~~e~~V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHvALvkGd~~~~~~~pvLVRVHSeClTGDvfgS~rC 274 (555)
T PRK09319 195 SIADLISYRLQNERFVYREAVAKLPSQFGQFQAYGYRNELDGSEHVALVKGDPANFKDEPVLVRMHSECLTGDAFGSLRC 274 (555)
T ss_pred EhHHhHHHHhhccccceEEEEEeeecCCccEEEEEEEeCCCCeEEEEEEcCCcccccCCCceEEEeccCcHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999963 57999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCe
Q 016051 237 DCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRT 316 (396)
Q Consensus 237 dC~~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~ 316 (396)
||++||++||++|+++|.||||||+ ||||||||.||+++|.||++|+||++||..+||+.|.|+||+|||||++|||++
T Consensus 275 DCg~QL~~AL~~Ia~eG~GVlVYLr-qEGRGiGL~nKl~aY~LQd~G~DTveAn~~lG~~~D~RdYgigAQIL~dLGI~k 353 (555)
T PRK09319 275 DCRMQLEAALKMIENEGEGVVVYLR-QEGRGIGLINKLKAYSLQDGGLDTVEANERLGFPADLRNYGVGAQILNDLGIKR 353 (555)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEeC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCcccceehhHHHHHHHHcCCCE
Confidence 9999999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCcccccccccCCcEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCCCC
Q 016051 317 MKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSG 371 (396)
Q Consensus 317 irLLTNnP~K~~aL~~~Gi~V~e~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~~ 371 (396)
||||||||+|+.+|++|||+|++++|+++++|++|++||+||++||||+|..+.-
T Consensus 354 IrLLTNNP~Ki~~L~~~GIeVv~rvpl~~~~~~~n~~YL~tK~~k~gH~l~~~~~ 408 (555)
T PRK09319 354 LRLITNNPRKIAGLGGYGLEVVDRVPLLIEANDYNAEYLATKAEKLGHLLLQTYL 408 (555)
T ss_pred EEECCCCHHHHHHHHhCCCEEEEEecccCCCCcchhHHHHHHHHhhCCccCCCcc
Confidence 9999999999999999999999999999999999999999999999999987653
No 3
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=3e-125 Score=958.54 Aligned_cols=366 Identities=62% Similarity=1.041 Sum_probs=360.0
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+|||++|||.||||++|++|+||+||++++|++|+||+|+.. |++.++|+||||||+++|++|||||.|||+|||+||
T Consensus 36 ~aAe~~t~e~i~fm~~~~~Glic~~lt~~~a~~L~L~~m~~~--~~~~~~t~ftvsvd~~~g~~TGISa~dRa~Tir~la 113 (402)
T PRK09311 36 FAAEKATPELVAFMVRHTSGYVCVPLTEEDADRLDLPPMVAH--NQDSHGTAFTVSVDAANGVTTGISAADRATTIRLLA 113 (402)
T ss_pred EEchhCCHHHHHHHHHhCCCceEEecCHHHHhhCCCCccccc--CCCCCCCceEEEEEccCCcccccchhHHHHHHHHHh
Confidence 589999999999999999999999999999999999999987 888899999999999889999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
+++++|+||++|||||||++++|||++|+|||||||||||||||.|+||||||+++||+|++.+++.+||++|+||++++
T Consensus 114 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Paavi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i 193 (402)
T PRK09311 114 DPASKPADFTRPGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVICEIVNEDGTMARVPELRVFADEHDLALITI 193 (402)
T ss_pred CccCChhhccCCCcccceeeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecCCCcccchHHHHHHHHHcCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCChH
Q 016051 161 ADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGN 240 (396)
Q Consensus 161 ~dLi~yr~~~e~lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~~ 240 (396)
+|||+||..+|++|+++++.+|||.||+|++++|++..++.||+|||+|++.+++||||||||+|+|||+|||.+|||+|
T Consensus 194 ~dli~yr~~~e~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~ALv~Gd~~~~~~vlVRVHs~c~tgDvfgs~~cdc~~ 273 (402)
T PRK09311 194 ADLIAYRRRHEKLVEREVEARLPTRFGEFRAIGYTSILDGKEHVALVKGDIGDGEDVLVRVHSECLTGDVFGSRRCDCGP 273 (402)
T ss_pred echHHHHhhccccceeEEEEEeecCCccEEEEEEEECCCCeEEEEEEeCCCCCCCceeEEEeccCCHHHHhcCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeec
Q 016051 241 QLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLM 320 (396)
Q Consensus 241 qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLL 320 (396)
||++||++|+++|+||||||++|||||+||.+|+++|.+|++|+||++||..+|++.|.|+||+|||||++|||++||||
T Consensus 274 qL~~Al~~I~~eG~GvlvyL~~qegrg~gl~~Kl~ay~lq~~g~dt~~an~~lg~~~D~Rdyg~gaqIL~~LGv~~irLL 353 (402)
T PRK09311 274 QLDAALAQIAEEGRGVVLYMRGQEGRGIGLLHKLRAYQLQDEGYDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLL 353 (402)
T ss_pred hHHHHHHHHHHcCCEEEEEEecCCcccchHHHHHHHHhhhhcCCChhhhhhhcCCCccceehhHHHHHHHHcCCCEEEEC
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccCCcEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCC
Q 016051 321 TNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGL 368 (396)
Q Consensus 321 TNnP~K~~aL~~~Gi~V~e~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~ 368 (396)
||||+|+.+|++|||+|++++|+++.+|++|++||+||++||||+|+.
T Consensus 354 Tnnp~K~~~L~~~GieV~~~v~~~~~~~~~n~~yl~tK~~~~gH~l~~ 401 (402)
T PRK09311 354 TNNPRKIAGLQGYGLHVTERVPLPVRANEENERYLRTKRDRMGHDLDL 401 (402)
T ss_pred CCCHHHHHHHhhCCCEEEEEeccCCCCChhhHHHHHHHHHhccCCCCC
Confidence 999999999999999999999999999999999999999999999875
No 4
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=8.4e-125 Score=948.33 Aligned_cols=355 Identities=41% Similarity=0.680 Sum_probs=343.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+||+++|||.||||++|++|+||+||++++|++|+||+|+. |. .+|+|||||||+ .+|||||.|||+|||+||
T Consensus 29 ~aA~~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~---~~--~~~aftvsvd~~--~~TGISa~DRa~Tir~la 101 (387)
T PRK09318 29 YPAQIITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPS---NG--GETNFFIPVDYG--TGTGISASERALTCRKLA 101 (387)
T ss_pred EEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhcCCccccC---CC--CCCCEEEEEcCC--CCCCcCHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999994 33 468999999996 359999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
+ .++|+||+||||||||.+. ||++|+||||||||||||||+.|+||||||+++||+|+|++++.+||++|+||+++|
T Consensus 102 ~-~~~~~df~~PGHvfpL~~~--gvl~R~GhTEaavdL~~lAGl~p~~vicei~~~dG~m~~~~~~~~fA~~h~l~~i~i 178 (387)
T PRK09318 102 E-GLYVHEFRYPGHVTLLGGI--GFNRRRGHTEASLELSELLGFKRYAVIVEILDEKGDSHDLDYVLKLAEKFSLPVLEI 178 (387)
T ss_pred h-cCCHHHhcCCCccCCCCCc--cccccCCcHHHHHHHHHHcCCCceEEEEEEecCCCccccHHHHHHHHHHCCCcEEEH
Confidence 9 6789999999999999875 799999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCChH
Q 016051 161 ADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGN 240 (396)
Q Consensus 161 ~dLi~yr~~~e~lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~~ 240 (396)
+|||+||.++|++|+++++.++||.||+|++++|++..++.||+|||+|++. +||||||||+|+|||+|||.+|||++
T Consensus 179 ~dli~~r~~~e~~V~~v~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~g~~~--~~vLVRVHSec~tgDvfgs~~CdCg~ 256 (387)
T PRK09318 179 DDVWKEFVRRKQLIKVKAEAKLPTDYGEFEIVSFENHLDGKEHVAIVKEPLG--EVPLVRIHSECVTGDTLSSLRCDCGS 256 (387)
T ss_pred HHHHHHHHhccCceEEEEEEecccCcccEEEEEEEeCCCCcEEEEEEeCCCC--CCceEEEeecccHHHHhcCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999985 48999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeec
Q 016051 241 QLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLM 320 (396)
Q Consensus 241 qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLL 320 (396)
||+.||++|+++| ||||||+ ||||||||.+|+++|.||++|+||++||..+||+.|.|+||+|||||++|||++||||
T Consensus 257 qL~~Al~~Ia~eG-GvlvYLr-qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~dLGV~~irLL 334 (387)
T PRK09318 257 QLANFLRMISKEG-GILIYLR-QEGRGIGLSNKIKAYELQDKGLDTVEANRALGFKEDERDYAAAFQILKALGIEKVRLL 334 (387)
T ss_pred hHHHHHHHHHHcC-CEEEEEC-CCCcchhHHHHHHHHhhhhcCCCchhhhhhcCCCccceeeeHHHHHHHHcCCCEEEEC
Confidence 9999999999999 9999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccCCcEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCC
Q 016051 321 TNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLN 369 (396)
Q Consensus 321 TNnP~K~~aL~~~Gi~V~e~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~ 369 (396)
||||+|+.+|++|||+|++++|++.++|++|++||+||++||||+|+..
T Consensus 335 TNnp~K~~~L~~~GieV~~~vpl~~~~~~~n~~Yl~tK~~k~gH~l~~~ 383 (387)
T PRK09318 335 TNNPRKTKALEKYGIEVVETVPLYGEVTKYNRFYLKTKVEKLGHKLELR 383 (387)
T ss_pred CCCHHHHHHHHhCCCEEEEEeccCCCCCchhHHHHHHHHHhhCCCcCcC
Confidence 9999999999999999999999999999999999999999999999763
No 5
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.5e-113 Score=862.64 Aligned_cols=333 Identities=41% Similarity=0.654 Sum_probs=317.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+||+++|||+||||++|++|+||+||++++|++|+||+|+.. |++.++|+|||||||++|++|||||.|||+|||+||
T Consensus 35 ~~A~~~t~e~i~fm~~~~~Glic~~l~~~~~~~L~Lp~m~~~--~~~~~~~~ftvsvda~~g~~TGISa~DRa~Tir~la 112 (369)
T PRK12485 35 LAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPS--NGSVFSTAFTVSIEAATGVTTGISAADRARTVAAAV 112 (369)
T ss_pred EEhhhCCHHHHHHHHHhCCceEEEeCCHHHHhhCCCCccccc--CCCCCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999987 888899999999999889999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
+|+++|+||++|||||||+|++|||++|+||||||||||||||+.|++|||||+++||+|++++++..||++|+||+++|
T Consensus 113 ~~~~~~~df~~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~avi~ei~~~dg~m~~~~~~~~fA~~h~l~~i~i 192 (369)
T PRK12485 113 APNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEVFAAKHGIKIGTI 192 (369)
T ss_pred CCCCCHHHcCCCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCceEEEEEEecCCCCccChHHHHHHHHHcCCcEEEH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCC-CCh
Q 016051 161 ADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARC-DCG 239 (396)
Q Consensus 161 ~dLi~yr~~~e~lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~C-dC~ 239 (396)
+|||+||..+|++|+++++++|||.||+|++++|++..++.||+||++|++.+++||||||||+|+|||+|||.+| ||+
T Consensus 193 ~~li~yr~~~e~~V~~v~~~~lpT~~G~f~~~~y~~~~~g~eHvALv~G~~~~~~~vlVRvHSecltgDv~gS~~c~d~g 272 (369)
T PRK12485 193 ADLIHYRLSTEHTIKRIGERELPTVHGTFRLVTYEDRIEGGVHMAMVMGDIRREQPTLVRVHVIDPLRDLVGAEYAGPAN 272 (369)
T ss_pred HHHHHHHHhccccceeEEEEEeecCCCCEEEEEEEeCCCCeEEEEEEeCCCCCCCCceEEEecccchhhhhcCCCCCccH
Confidence 9999999999999999999999999999999999999999999999999998889999999999999999999875 999
Q ss_pred HHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeee
Q 016051 240 NQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKL 319 (396)
Q Consensus 240 ~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irL 319 (396)
|||+.||++|+++|+|||||||+|+ +++||.||+++|..|+.+++..+ ..|+|+||+|||||++|||++|||
T Consensus 273 ~qL~~Al~~I~~eG~GvlvYLr~~~-~~~gl~~kl~a~~~~~~~~~~~d-------~r~~r~ygigAqILr~LGV~kirL 344 (369)
T PRK12485 273 WTLWAALQKVAEEGHGVVVVLANHE-SSQALLERIPQLTQPPRQYQRSQ-------SRIYSEVGTGAQILQDLGVGKLRH 344 (369)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCC-chhhHHHHHHHHHhHhhCCCccc-------chhhhhhhHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999555 56999999999987776665311 236779999999999999999999
Q ss_pred ccCCcccccccccCCcEEEEEeecC
Q 016051 320 MTNNPSKYVGLKGYGLAIAGRIPLL 344 (396)
Q Consensus 320 LTNnP~K~~aL~~~Gi~V~e~vp~~ 344 (396)
| |||.|+.+|++|||+|+++||+.
T Consensus 345 L-nNP~K~~~L~~~GIeV~~~vp~~ 368 (369)
T PRK12485 345 L-GPPLKYAGLTGYDLEVVESIPFP 368 (369)
T ss_pred C-CCchhhhhhhhCCcEEEEEecCC
Confidence 9 77999999999999999999974
No 6
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=100.00 E-value=1.9e-110 Score=841.21 Aligned_cols=331 Identities=48% Similarity=0.774 Sum_probs=322.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+|||++|+|.||||++|++|+||+||++++|++|+||+|+.. |++.++++||||||++++++|||||.|||+|||.|+
T Consensus 35 ~aAe~~t~e~v~fm~~~~~Glic~~lt~~ra~~L~L~~m~~~--~~~~~~~~ftvsvd~~~g~~TGISa~DRa~Tir~la 112 (367)
T PRK14019 35 MAAEFVTPEAINFMAKHGRGLICLTLTEERCEQLGLPLMTYR--NGTQYGTNFTVSIEAAEGVTTGISAADRARTIQAAV 112 (367)
T ss_pred EEhhhCCHHHHHHHHHhCCCCeEEecCHHHHhhcCCCccccc--CCCcCCCceEEEEEcCCCccceeecHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999986 788889999999999889999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
+++++|+||++|||||||++++||+++|+|||||||||||+|||.|++|||||+++||+|++.+++.+||++|+||++++
T Consensus 113 ~~~~~~~df~~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~ei~~~~g~~~~~~~~~~fA~~h~L~~v~i 192 (367)
T PRK14019 113 ARDAKPEDIVQPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEFAKEHGLKIGTI 192 (367)
T ss_pred cCCCChhhcCCCCCccceeecccCcccCCCchHHHHHHHHHcCCCceEEEEEEecCCCcccchHHHHHHHHHcCCcEEEH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCChH
Q 016051 161 ADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGN 240 (396)
Q Consensus 161 ~dLi~yr~~~e~lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~~ 240 (396)
+||++||.++|++|++++++++||.||+|++++|++..++.||+||++|++.+++||||||||+|+|||+|||.+|||+|
T Consensus 193 ~dli~yr~~~~~~v~~v~~~~lpt~~G~f~~~~y~~~~~~~eH~Alv~Gd~~~~~~vlVRvHS~c~tgDvfgs~~cdcg~ 272 (367)
T PRK14019 193 ADLIHYRSRTESIVERVAERPMQTAHGEFRLVAYRDKPSGSTHLALVKGTICPDEETLVRVHEPLSVLDLLEVGQPTHSW 272 (367)
T ss_pred HHHHHHHhhcccccccceeEeeccCCccEEEEEEEeCCCCcEEEEEEeCCcCCCCceeEEEeeccchHhHhcCCCCCcHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeec
Q 016051 241 QLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLM 320 (396)
Q Consensus 241 qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLL 320 (396)
||+.||++|+++|+||||||+ ||||||||.||+++ |++||..+|++.|+|+|++|||||++|||++||||
T Consensus 273 qL~~al~~I~~~G~GvlvyL~-qegrgigl~~k~~~---------~~~an~~lg~~~d~R~y~igaqIL~~Lgv~~irLl 342 (367)
T PRK14019 273 SLDAAMAAIAEAGSGVVVLLN-CGDDGEHLLDRFRA---------EEAAAALKRRPVDYRTYGIGAQILRDLGVGKMRLL 342 (367)
T ss_pred HHHHHHHHHHhcCCEEEEEEc-cCCchhhHHHhhhh---------hhhhhhhcCCCcccceehHHHHHHHHcCCCeEEEC
Confidence 999999999999999999998 99999999999986 45789999999999999999999999999999999
Q ss_pred cCCcccccccccCCcEEEEEeecC
Q 016051 321 TNNPSKYVGLKGYGLAIAGRIPLL 344 (396)
Q Consensus 321 TNnP~K~~aL~~~Gi~V~e~vp~~ 344 (396)
| ||.|+.+|++|||+|++++|+.
T Consensus 343 T-np~K~~~L~~~Gi~V~~~~~~~ 365 (367)
T PRK14019 343 S-SPRKFPSMSGFGLEVTGYVPMP 365 (367)
T ss_pred C-CcHHHHhhhhCCcEEEEEecCC
Confidence 9 6999999999999999999864
No 7
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=4.1e-107 Score=805.96 Aligned_cols=304 Identities=44% Similarity=0.674 Sum_probs=291.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+||+++|||.||||+||++|+||+||++++|++|+||+|+.. |++.++|+|||||||+ +++|||||.|||+|||+||
T Consensus 35 ~aAe~~T~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~--n~~~~~taFtvsVda~-~~~TGISA~DRa~Tir~la 111 (339)
T PRK09314 35 YAAIFSTPEKVNFMATHARGLICVSLTKELAKKLELPPMVSK--NTSNHETAFTVSIDAK-EATTGISAFERDMTIKLLA 111 (339)
T ss_pred EEhhhCCHHHHHHHHHhCCCceEEECCHHHHhhCCCCccccc--CCCCCCCCeEEEEecC-CCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999987 8888999999999998 5799999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
++.++|+||++|||||||+|++|||++|+||||||||||||||+.|+||||||||+||+|++++++.+||++|+||+++|
T Consensus 112 ~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi 191 (339)
T PRK09314 112 DDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARRDDLEDFAKKHNLKMIYV 191 (339)
T ss_pred CCCCCHHHcCCCCceeeEEEcCCCcccCCCCCchhhHHHHHcCCCceEEEEEEecCCCCcccHHHHHHHHHHcCCcEEEH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCChH
Q 016051 161 ADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGN 240 (396)
Q Consensus 161 ~dLi~yr~~~e~lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~~ 240 (396)
+|||+||..+|++|+++++++|||.||+|++++|++. ++.||+|||+|++.. ||||||||+|+|||+|++ ||.+
T Consensus 192 ~dli~yr~~~e~~v~~~~~~~lpt~~g~f~~~~y~~~-~~~eHlALv~G~~~~--~vlVRVHSec~tgd~l~~---~~~~ 265 (339)
T PRK09314 192 SDLVEYRLKNESLIKEEEKEESEFAGFKAEKYTFLDH-LQNEHIAFKFGEIKL--TPNVKFHKIGSDFELLTS---DKFS 265 (339)
T ss_pred HHHHHHHHhcccceEEEEEEecCCCCccEEEEEEEcC-CCCEEEEEEeCCCCC--CccEEEeccCChHHhhCC---CcHH
Confidence 9999999999999999999999999999999999987 899999999999963 899999999999999985 4559
Q ss_pred HHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeec
Q 016051 241 QLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLM 320 (396)
Q Consensus 241 qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLL 320 (396)
||+.||++|+++| ||||||| ||||+ +| +.|+||+|||||++|||++||||
T Consensus 266 qL~~Al~~I~~eG-GvlvYLr-qegr~---------------------an-------~~RdygigaqIL~dLGi~~irLl 315 (339)
T PRK09314 266 ELLKAIEYLKKNG-GVLIFLN-TESKE---------------------NN-------QVKDYGIGAQILKYLGIKDIKLL 315 (339)
T ss_pred HHHHHHHHHHHcC-CEEEEEc-CCCCC---------------------cc-------cccchhHHHHHHHHCCCCEEEEC
Confidence 9999999999999 9999999 99874 22 48999999999999999999999
Q ss_pred cCC-cccccccccCCcEEEEEeec
Q 016051 321 TNN-PSKYVGLKGYGLAIAGRIPL 343 (396)
Q Consensus 321 TNn-P~K~~aL~~~Gi~V~e~vp~ 343 (396)
||| |+|+.+|++|||+|+++|.+
T Consensus 316 Tnn~p~K~~~L~~~GieV~e~v~~ 339 (339)
T PRK09314 316 SSSEDKEYVGLSGFGLNIVETIEL 339 (339)
T ss_pred CCCChhhhhhHhhCCcEEEEEEeC
Confidence 999 99999999999999999864
No 8
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=3e-102 Score=782.79 Aligned_cols=322 Identities=33% Similarity=0.520 Sum_probs=304.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+|||++|||.||||++|++|++|+||++++|++|+||+|. .||++|. || +.||++||+.++
T Consensus 46 ~aAe~~t~e~infm~~~~~Glicl~lt~~ra~~L~L~~m~-----------~~t~~is-------~i-d~dRa~Ti~~~~ 106 (375)
T PRK08815 46 IALDSSTAQSAAAFARAAQGRHYLFLTATRAQVLGLEAPQ-----------GARVALP-------DV-DYDRLAALAYLR 106 (375)
T ss_pred EEhhhCCHHHHHHHHHhcCCceEEECCHHHHhhcCCCCCc-----------CcEEeEe-------cc-hHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999992 1333332 44 369999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
++ +|.||++|||||| ||||||||||||.|+||||||+++|+ + +|| +||++||
T Consensus 107 ~~--~~~d~~~PGHif~---------------EAavDLarLAGl~Paavi~Ei~~~~~--~------~fa---~L~i~tI 158 (375)
T PRK08815 107 DG--RVPAPWAPGDALD---------------AGAVEIARLALLLPAMVAVPLPVHDE--A------AFA---GCQALAL 158 (375)
T ss_pred cC--CccccCCCCCCcc---------------HHHHHHHHHcCCCceEEEEEEccCCC--h------hhC---CCcEeeH
Confidence 99 6899999999997 99999999999999999999999743 2 776 9999999
Q ss_pred hhHHHHHh-hhhhhhhhcccccccCCc-ccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCC
Q 016051 161 ADLIRYRR-KRDRLVELAAAAPIPTMW-GPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDC 238 (396)
Q Consensus 161 ~dLi~yr~-~~e~lV~~~~~~~lpT~~-G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC 238 (396)
+|||+||. .+|++|++++++++||.+ |+|++++|++..++.+|+|||+|++.+++||||||||+|+|||+|||.+|||
T Consensus 159 ~dLi~yR~~~~e~~v~~v~~~~lpt~~~g~f~~~~yr~~~~~~eH~ALv~G~~~~~~~vlVRVHs~c~tgDvfgs~~cdc 238 (375)
T PRK08815 159 ADLDAGCATSAAAGYELVTRTPVPLRGLGMTEFVVFRGGVAQRDQVAIVVGQPDLSSAVPVRVHSSCLTGDLFGSLKCDC 238 (375)
T ss_pred HHHHHHHHhCcccceEEEEEEecccCCcCcEEEEEEEeCCCCcEEEEEEeCCCCCCCCceEEEeccCcHHHHhcCCCCCC
Confidence 99999998 889999999999999996 9999999999999999999999999988899999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeee
Q 016051 239 GNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMK 318 (396)
Q Consensus 239 ~~qL~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~ir 318 (396)
+|||++||++|+++|+||||||+ |||||+|+.+|+++|.+|++|+||++||..+|++.|.|+||+|||||++|||++||
T Consensus 239 ~~qL~~Al~~I~~~G~GVlvyL~-qegrg~gl~~kl~ay~lq~~g~dt~~a~~~lg~~~D~RdygigAQIL~dLGV~kir 317 (375)
T PRK08815 239 GDQLRHGLAKLKELGGGVLLYLD-QEGRGNGIAAKMRAYGYQHAGLDTIDADAQLGFGPDERRYGSAVAMLRGLGITRVR 317 (375)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEc-CCCccchHHHHHHHHhhhhccCCchhhhhhcCCCccceeeeHHHHHHHHcCCCeEE
Confidence 99999999999999999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccccccccCCcEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCCC
Q 016051 319 LMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNS 370 (396)
Q Consensus 319 LLTNnP~K~~aL~~~Gi~V~e~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~ 370 (396)
||||||+|+.+|++|||+|++++|+++..|++|.+||+||++||||+|+.+.
T Consensus 318 LLTnnp~K~~~L~g~gieVv~~vp~~~~~~~~n~~yl~tK~~~~gh~l~~~~ 369 (375)
T PRK08815 318 LLTNNPTKAERLRAAGIEVEDRIRVTGRITAENERYLRTKADRAGHALDVDA 369 (375)
T ss_pred ECCCCHHHHHHHHhCCCEEEEEeccCCCCCchhhhHHHHHHHHhCCCcCccc
Confidence 9999999999999999999999999999999999999999999999997643
No 9
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=100.00 E-value=6.8e-70 Score=502.73 Aligned_cols=192 Identities=57% Similarity=1.010 Sum_probs=188.4
Q ss_pred hhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCChHHHHHHHHHHHHc
Q 016051 173 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 252 (396)
Q Consensus 173 lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~ 252 (396)
.+++++++++||.+|.|++++|++..++.+|+|+|+|++.. +||||||||||+|||+|+|.+|||++||+.||++|+++
T Consensus 2 ~ve~~~~a~lpt~~g~f~~~~y~~~~d~~~HlAlv~G~~~~-~~~lVRvHsEcltgDvl~s~rcdcg~ql~~al~~i~~~ 80 (193)
T COG0807 2 LVERVAEAKLPTELGEFRIVGYRDKIDGKEHLALVKGDISA-EPVLVRVHSECLTGDVLGSLRCDCGEQLEAALRRIAEE 80 (193)
T ss_pred ceeeeecccCCCCCceEEEEEEeccCCCceEEEEEecCCCC-CCceEEEeccccccchhcCCCCCcHHHHHHHHHHHhhc
Confidence 47889999999999999999999999999999999999975 79999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeeccCCccccccccc
Q 016051 253 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 332 (396)
Q Consensus 253 G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~ 332 (396)
|+||||||| ||||||||.||++||.|||.|.||++||.++||+.|+|+||+|||||++|||++||||||||+|+.+|.+
T Consensus 81 g~GVvvYLr-qEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygigAqIL~dLGI~~irLLtnnp~K~~~l~~ 159 (193)
T COG0807 81 GSGVVVYLR-QEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGIGAQILKDLGIKKIRLLTNNPRKIYGLEG 159 (193)
T ss_pred CceEEEEee-cCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 016051 333 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 366 (396)
Q Consensus 333 ~Gi~V~e~vp~~~~~~~~n~~Yl~tK~~k~gH~l 366 (396)
|||+|++|+|++...|++|+.||+||++||||+|
T Consensus 160 ~Gi~vverv~~~~~~~~~n~~yl~tk~~k~gh~~ 193 (193)
T COG0807 160 FGINVVERVPLIVGANPENEFYLKTKKEKMGHLL 193 (193)
T ss_pred CCceEEEEeecCCCCCcchHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999986
No 10
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.3e-68 Score=487.68 Aligned_cols=168 Identities=58% Similarity=0.961 Sum_probs=164.9
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+||+++|||+||||++|++||||+||++++|++|+||+|+.. |++.++|+|||||||++ |+|||||.|||+|||.|+
T Consensus 35 ~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~--n~~~~~taFtVsVd~~~-t~TGISa~DRa~TIr~l~ 111 (203)
T COG0108 35 FAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDN--NTDAHGTAFTVSVDARE-TTTGISAADRALTIRALA 111 (203)
T ss_pred EEhhhCCHHHHHHHHHhCCeeEEEeCCHHHHHhCCCcccccc--CCCCCCCceEEEEeccc-CcCCcCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999998 89999999999999986 999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
+++++|+||+||||||||+|++|||++|+|||||+|||||||||.|++|||||+|+||+|++.+++.+||++||||++||
T Consensus 112 ~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~iti 191 (203)
T COG0108 112 DPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVITI 191 (203)
T ss_pred cCCCCHHHcCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEEEeCCCccccChHHHHHHHHHcCCcEEEH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhh
Q 016051 161 ADLIRYRRKRD 171 (396)
Q Consensus 161 ~dLi~yr~~~e 171 (396)
+|||+||.++|
T Consensus 192 ~dli~yr~~~e 202 (203)
T COG0108 192 EDLIEYRKKHE 202 (203)
T ss_pred HHHHHHHHhhc
Confidence 99999998876
No 11
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=8.9e-65 Score=476.38 Aligned_cols=169 Identities=46% Similarity=0.808 Sum_probs=165.3
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+||+++|||+||||+||++|+||+||++++|++|+||+|+.. |++.++|+||||||+++|++|||||.|||+|||+||
T Consensus 46 ~aAe~~T~e~v~fm~r~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~~~~taFtvsVda~~g~~TGISA~DRa~Tir~la 123 (218)
T PRK00910 46 YSVEHLTNAQMALMIRECSGIVCLCLTDAQADKLELPPMVVN--NNSANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAA 123 (218)
T ss_pred EEhhhCCHHHHHHHHHhCCccEEEECCHHHHhhCCCCccccC--CCCCCCCCeEEEEecCCCCCCCcCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999976 888899999999999889999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
++.++|+||+||||||||++++|||++|+||||||||||||||+.|++|||||+++||+|++++++.+||++|+||+++|
T Consensus 124 ~~~~~~~df~rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi 203 (218)
T PRK00910 124 NPQAKPEDLARPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKLHNMPVLTI 203 (218)
T ss_pred CCCCCHHHcCCCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEEEEEEecCCCCcCCHHHHHHHHHHcCCcEEEH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhh
Q 016051 161 ADLIRYRRKRD 171 (396)
Q Consensus 161 ~dLi~yr~~~e 171 (396)
+|||+||.++|
T Consensus 204 ~dli~yr~~~~ 214 (218)
T PRK00910 204 EDMVMYRNQFD 214 (218)
T ss_pred HHHHHHHHHhc
Confidence 99999998877
No 12
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=1.7e-64 Score=473.41 Aligned_cols=168 Identities=49% Similarity=0.822 Sum_probs=164.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+||+++|||+||||+||++|+||+||++++|++|+||+|+.. |++.++|+|||||||++|++|||||.|||+|||.|+
T Consensus 45 ~aAe~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--n~~~~~taFtvsVda~~g~~TGISA~DRa~Tir~la 122 (214)
T PRK01792 45 FPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQH--NTSVNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAI 122 (214)
T ss_pred EEhhhCCHHHHHHHHHHCCccEEEeCCHHHHhhCCCCccccc--CCCCCCCCEEEEEecCCCCCCCcCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999987 888899999999999989999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
++.++|+||++|||||||+|++|||++|+||||||||||||||+.|+||||||+++||+|++++++.+||++|+||+++|
T Consensus 123 ~~~~~~~df~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi 202 (214)
T PRK01792 123 ADNAKPSDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFGYAVVTI 202 (214)
T ss_pred CCCCCHHHcCCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhh
Q 016051 161 ADLIRYRRKR 170 (396)
Q Consensus 161 ~dLi~yr~~~ 170 (396)
+|||+||.++
T Consensus 203 ~dli~yr~~~ 212 (214)
T PRK01792 203 EDLVEYRLKY 212 (214)
T ss_pred HHHHHHHHHc
Confidence 9999999754
No 13
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=2.2e-63 Score=469.02 Aligned_cols=170 Identities=48% Similarity=0.773 Sum_probs=165.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
++|+++|||+||||+||++||||+||++++|++|+||+|+.. |.+.++|+||||||+++|++|||||.|||+|||.||
T Consensus 50 ~aAe~~T~e~v~fm~r~~~GliCva~~~~~a~~L~Lp~m~~~--n~~~~~t~ftvSVDa~~gttTGISA~DRa~Tir~La 127 (230)
T PRK00014 50 VAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDS--NRSRYSTAFTVSIEAREGVTTGVSAVDRVTTIRAAI 127 (230)
T ss_pred EEhhhCCHHHHHHHHHHCCccEEeeCCHHHHhhCCCCccccc--CCCCCCCCeEEEEEcCCCCCCCcCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999987 888899999999999889999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
+++++|+||+||||||||++++|||++|+||||||||||||||+.|++||||||++||+|++.+++.+||++|+||+++|
T Consensus 128 ~~~~~~~DF~rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~vicEil~~dG~ma~~~~l~~fA~~~~l~iisi 207 (230)
T PRK00014 128 APGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLVALAI 207 (230)
T ss_pred CCCCCHHHcCCCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhhh
Q 016051 161 ADLIRYRRKRDR 172 (396)
Q Consensus 161 ~dLi~yr~~~e~ 172 (396)
+|||+|+.++..
T Consensus 208 ~dli~y~~~~~~ 219 (230)
T PRK00014 208 DELAAHLQARGA 219 (230)
T ss_pred HHHHHHHHHHhh
Confidence 999999986543
No 14
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=100.00 E-value=1.9e-63 Score=461.78 Aligned_cols=165 Identities=61% Similarity=0.963 Sum_probs=153.3
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
++|+++||++||||+||++|+||+||++++|++|+||+|+.. |++.++|+|||||||+.|++|||||.|||+|||+||
T Consensus 30 ~aAe~~t~e~v~fm~~~~~Glicva~~~~~~~~L~L~~m~~~--~~~~~~~~ftvsVD~~~g~~TGISa~DRa~Tir~La 107 (194)
T PF00926_consen 30 FAAEFVTPEKVNFMIRHASGLICVAMPEERADRLGLPPMVPD--NTDPHGTAFTVSVDAAKGTTTGISAADRARTIRALA 107 (194)
T ss_dssp EEGGG--HHHHHHHHHHBCSEEEEEEEHHHHHHTT-SBSCSS--CCTTTS--BBCEEEESSS-SSSSSHHHHHHHHHHHH
T ss_pred eEHHhCCHHHHHHHHHhcCCCeEecCCHHHHhHCCCCCCCCc--CCCCCCCCeeEeeecCCCCCCCcCHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999999996 888899999999999999999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
+++++|+||++|||||||++++|||++|+||||||||||||||++|++|||||+++||+|++++++.+||++|+||+++|
T Consensus 108 ~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~eil~~dG~~~~~~~~~~fA~~~~l~~vsi 187 (194)
T PF00926_consen 108 DPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICEILDDDGDMARRDELEEFAKKHGLPIVSI 187 (194)
T ss_dssp STTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEEBBETTSSBHCHHHHHHHHHHTT-EEEEH
T ss_pred CCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEEH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHH
Q 016051 161 ADLIRYR 167 (396)
Q Consensus 161 ~dLi~yr 167 (396)
+|||+||
T Consensus 188 ~dli~yr 194 (194)
T PF00926_consen 188 EDLIEYR 194 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999997
No 15
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=100.00 E-value=2.3e-62 Score=455.67 Aligned_cols=165 Identities=52% Similarity=0.861 Sum_probs=159.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCC-CCCCCChhHHHHHHHHH
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYG-TTTGVSANDRAKTVLAL 79 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g-~~TGISa~DRa~Tir~l 79 (396)
+|||++|||+||||++|++|+||+||++++|++|+||+|+.. |++.++|+||+|||+..+ ++|||||.|||+|||.+
T Consensus 34 ~aAe~~T~e~v~fm~~~~~GliC~~~~~~~a~~L~Lp~mv~~--n~~~~~t~~t~sV~~~~~~~~TGISa~DRa~Tir~~ 111 (199)
T TIGR00506 34 VAAEFITPEQIAFMRRHAGGLICVAITPDIADKLDLPPMVDI--NTSASGTASTFTITVAHRKTFTGISANDRALTIRAA 111 (199)
T ss_pred EEhhhCCHHHHHHHHHhCCCCEEEECCHHHHhhCCCCccccc--cCCcCCCceEEEEEeCCCCCCCCcCHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999987 888899998888886655 99999999999999999
Q ss_pred hcCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEe
Q 016051 80 ACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 159 (396)
Q Consensus 80 a~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~it 159 (396)
+++.++|+||+||||||||++++|||++|+||||||||||||||+.|++|||||+++||+|++.+++++||++|+||+++
T Consensus 112 a~~~~~~~df~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEil~~dG~m~~~~~~~~fA~~~~l~~is 191 (199)
T TIGR00506 112 LADVVKPSDFRRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELMEYAKKHNLKLIS 191 (199)
T ss_pred hCCCCCHHHcCCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHHcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHH
Q 016051 160 IADLIRYR 167 (396)
Q Consensus 160 i~dLi~yr 167 (396)
|+|||+||
T Consensus 192 i~dli~yr 199 (199)
T TIGR00506 192 IEDLIEYR 199 (199)
T ss_pred HHHHHhhC
Confidence 99999996
No 16
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=100.00 E-value=1.1e-60 Score=445.11 Aligned_cols=196 Identities=49% Similarity=0.855 Sum_probs=189.2
Q ss_pred hhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCChHHHHHHHHHHHHc
Q 016051 173 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 252 (396)
Q Consensus 173 lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~ 252 (396)
.|+++++.++||.||+|++++|++..++.+|+|||+|+|.++.|||||||++|+++|+|++.+|||++||++||++|+++
T Consensus 2 ~v~~~~~~~~~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~vlVRVH~~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~ 81 (197)
T PRK00393 2 QLKRVAEAKLPTPWGDFLMVGFEELATGKEHVALVFGDISGTEPVLVRVHSECLTGDALFSLRCDCGFQLEAALERIAEE 81 (197)
T ss_pred cEEEEEEEecccCCccEEEEEEEECCCCeEEEEEEECCCCCCCCceEEEecccCHHHHhcCCCCCCcchHHHHHHHHHHc
Confidence 37899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeeccCCccccccccc
Q 016051 253 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 332 (396)
Q Consensus 253 G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~ 332 (396)
|+||||||+ |+|+|+|+.+|+++|.+|+.+.|++++|..+|++.|.|+||+|||||++|||++||||||||.|+.+|++
T Consensus 82 G~GVlVyL~-~~g~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~mrLLtn~~~k~~~L~g 160 (197)
T PRK00393 82 GRGILLYLR-QEGRGIGLLNKIRAYALQDQGLDTVEANHQLGFAADERDYTLAADMLKALGVKKVRLLTNNPKKVEALTE 160 (197)
T ss_pred CCEEEEEEc-CCCcchhHHHHHHHHhhhhccCcchhhhhhcCCCccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHh
Confidence 999999998 9999999999999999999888999998888999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCC
Q 016051 333 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLN 369 (396)
Q Consensus 333 ~Gi~V~e~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~ 369 (396)
|||+|++++|++++.+++|++||+||++||||.|+++
T Consensus 161 ~GleV~~~~~~~~~~~~~~~~y~~~k~~~~~h~l~~~ 197 (197)
T PRK00393 161 AGINIVERVPLIVGRNPHNEHYLKTKAEKMGHLLSLD 197 (197)
T ss_pred CCCEEEEEecccCCCCchhhHHHHHHHHhhcCCCCCC
Confidence 9999999999988999999999999999999999864
No 17
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=100.00 E-value=1.3e-59 Score=436.01 Aligned_cols=191 Identities=53% Similarity=0.867 Sum_probs=184.7
Q ss_pred hhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCChHHHHHHHHHHHHcCC
Q 016051 175 ELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGR 254 (396)
Q Consensus 175 ~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~ 254 (396)
+++++.++||.||+|++++|++..++.+|+|||+|++.++.|||||||++|.++|+|++.+|||++||++||++|+++|+
T Consensus 1 erv~e~~~~t~~G~f~~~~y~d~~~~~~H~ALvkG~i~~~~~~lVRvH~~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~ 80 (191)
T TIGR00505 1 ERVAEAKLPTPYGDFYMVGFEEPATGKDHVALVKGDISAHTDVLVRIHSECLTGDALHSLRCDCGFQLEAALKQIAEEGR 80 (191)
T ss_pred CeEEEEecccCceeEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEecccCHHHHhcCCCCCCCchHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeeccCCcccccccccCC
Q 016051 255 GVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYG 334 (396)
Q Consensus 255 GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~~G 334 (396)
||||||+ |+++++|+.+|+++|++|+.+.+|+++|..+|++.|.|+||+|||||++|||++||||||||.|+.+|++||
T Consensus 81 GVlVyL~-~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGiGAQIL~dLGV~~~rLLtn~~~k~~~L~g~g 159 (191)
T TIGR00505 81 GVLIYLR-QEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSLCADILEDLGVKKVRLLTNNPKKIEILKKAG 159 (191)
T ss_pred EEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhHHHHHHHHcCCCEEEECCCCHHHHHHHHhCC
Confidence 9999998 999999999999999999988899999989999999999999999999999999999999999999999999
Q ss_pred cEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 016051 335 LAIAGRIPLLTPITMENKRYLETKRAKMGHVY 366 (396)
Q Consensus 335 i~V~e~vp~~~~~~~~n~~Yl~tK~~k~gH~l 366 (396)
|+|++++|++...+++|.+||.||++||||.|
T Consensus 160 leVv~~~~~~~~~~~~~~~y~~~k~~~~~h~~ 191 (191)
T TIGR00505 160 INIVERVPLIVGRNENNEGYLDTKAEKMGHLL 191 (191)
T ss_pred CEEEEEeccccCCCcchHHHHHHHHHhhCCCC
Confidence 99999999888889999999999999999975
No 18
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=5.5e-59 Score=438.95 Aligned_cols=169 Identities=50% Similarity=0.875 Sum_probs=165.5
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
+|||.+|++.||||++|++|+||+++++++|++|+||+|+.. |++.++++||||||+++|++|||||.||++|||.++
T Consensus 45 ~aAe~~t~e~v~fm~~~~~G~ic~~lt~~ra~~L~L~~m~~~--~~~~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~l~ 122 (217)
T PRK03353 45 FAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVEN--NTSQYGTAFTVTIEAAEGVTTGVSAADRITTIRAAI 122 (217)
T ss_pred eEhhhCCHHHHHHHHHhcCCceEEecCHHHHhhcCCCccccc--cCCCCCCceEEEEECCCCCCCCcCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999987 888889999999999989999999999999999999
Q ss_pred cCCCCCCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeH
Q 016051 81 CRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISI 160 (396)
Q Consensus 81 ~~~~~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti 160 (396)
++.++|.||++|||||||++++|||++|+|||||||||||+|||.|++|||||+++||+|++.+++.+||++|+||++++
T Consensus 123 ~~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i 202 (217)
T PRK03353 123 ADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFAKQHNMPVLTI 202 (217)
T ss_pred CCCCCHHHcCCCCCccceeeccCCcccCCCchHHHHHHHHHcCCCceEEEEEeecCCCCcccHHHHHHHHHHcCCcEEEH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhh
Q 016051 161 ADLIRYRRKRD 171 (396)
Q Consensus 161 ~dLi~yr~~~e 171 (396)
+|||+||..+|
T Consensus 203 ~dli~~r~~~~ 213 (217)
T PRK03353 203 EDLVAYRQAHE 213 (217)
T ss_pred HHHHHHHHHhh
Confidence 99999999877
No 19
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=100.00 E-value=3.7e-59 Score=425.22 Aligned_cols=169 Identities=66% Similarity=1.138 Sum_probs=137.8
Q ss_pred hhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCChHHHHHHHHHHHHcC
Q 016051 174 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 253 (396)
Q Consensus 174 V~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G 253 (396)
|+|++++++||+||+|++++|++..++.+|+|||+|++++++||||||||+|+++|+|++.+|||+|||++||++|+++|
T Consensus 1 Verv~~~~~~T~~G~f~~~~y~~~~~~~~H~ALv~G~~~~~~~~lVRvHs~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G 80 (169)
T PF00925_consen 1 VERVAECPLPTRFGEFRLHAYRDTIDGQEHLALVKGDIDPDEPVLVRVHSECLTGDVFGSLRCDCGWQLDKAMRRIAEEG 80 (169)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTT--EEEEEEES---SSS-EEEEEEE--HHHHTS--SSSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCccEEEEEEEeCCCCeEEEEEEEecCCCCCCceEEecccccHhhhcCCCCCCCcHHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeeccCCcccccccccC
Q 016051 254 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGY 333 (396)
Q Consensus 254 ~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~~ 333 (396)
+||||||+ ||+||+|+.+|+++|.+|+.|.||++||..+|++.|.|+||+|||||++|||++||||||||+|+.+|++|
T Consensus 81 ~GVlVyL~-~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygigaqIL~dLGV~~~rLLtnnp~k~~~L~g~ 159 (169)
T PF00925_consen 81 RGVLVYLR-QEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGIGAQILRDLGVKKMRLLTNNPRKYVALEGF 159 (169)
T ss_dssp SEEEEEE---TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THHHHHHHHHTT--SEEEE-S-HHHHHHHHHT
T ss_pred CEEEEEEc-CCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHHHHHHHHHcCCCEEEECCCChhHHHHHhcC
Confidence 99999997 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeec
Q 016051 334 GLAIAGRIPL 343 (396)
Q Consensus 334 Gi~V~e~vp~ 343 (396)
||+|+++||+
T Consensus 160 gleV~~~vp~ 169 (169)
T PF00925_consen 160 GLEVVERVPL 169 (169)
T ss_dssp T--EEEEE--
T ss_pred CCEEEEEecC
Confidence 9999999996
No 20
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=1.5e-57 Score=428.31 Aligned_cols=163 Identities=28% Similarity=0.414 Sum_probs=149.5
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCC---------CCCCCC--CceEEEeeccCCCCCCCCh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKD---------NEEKLC--TAFTVSVDAKYGTTTGVSA 69 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~---------n~~~~~--t~FtvsVda~~g~~TGISa 69 (396)
+||+++|||+||||++|++|+||+||++++|++|+||+|+.... |++.++ |+|||||||. +++|||||
T Consensus 32 ~aAe~vT~e~i~fm~~~a~GliCval~~~~a~~L~Lp~m~~~~~~~~~~~~~~~~~~~~~~taFtvsVd~~-~~~TGISa 110 (219)
T PRK05773 32 FYAGAVTWKSIYTLRKNAGGLICYATSNSEGKTLGLNFLAEILKRHELYRKLVKKPSYGDEPAFSLWVNHV-KTKTGISD 110 (219)
T ss_pred EEhhhCCHHHHHHHHHHCCceEEEeCCHHHHhhCCCchhhhhcccccccccccccCCCCCCceEEEEEcCC-CCCCCcCH
Confidence 58999999999999999999999999999999999999987632 334444 7999999985 99999999
Q ss_pred hHHHHHHHHHhcC--------CCC----CCccCCCCccceeeeecCCccccCchhHHHHHHHHHhCCCCcEEEEEEecCC
Q 016051 70 NDRAKTVLALACR--------DSK----PEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDD 137 (396)
Q Consensus 70 ~DRa~Tir~la~~--------~~~----~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~d 137 (396)
.|||+|||+||++ ... |+||++|||||||+++ ||++|+||||||||||||||+.|++|||||||++
T Consensus 111 ~DRa~Tir~La~~~~~~~~~~~~~~~~~~~df~~PGHVfpL~a~--Gvl~R~GHTEasvdLa~lAGl~P~~vicEil~~~ 188 (219)
T PRK05773 111 YDRALTIRELHKVVELAKTNPEEAREEFYENFYSPGHVPILIGR--GIRERRGHTELSIALAQAAGLEPSAVIAEMLDEK 188 (219)
T ss_pred HHHHHHHHHHHhhhhccccCccccccCCHHHcCCCCCcceeccC--ccccCCChhHHHHHHHHHcCCCccEEEEEEeCCC
Confidence 9999999999983 222 8999999999999998 8999999999999999999999999999999975
Q ss_pred CcccChhHHHHHHHhCCCcEEeHhhHHHHH
Q 016051 138 GSMARLPKLRQFAQTENLKIISIADLIRYR 167 (396)
Q Consensus 138 g~~a~~~~l~~fA~~h~L~~iti~dLi~yr 167 (396)
.|++++++.+||++|+||+++|+|||+|-
T Consensus 189 -~~~~~~~~~~fA~~~~l~~isi~dli~~~ 217 (219)
T PRK05773 189 -LSLSKEKAKKIAKNLGFPLVEGKEIFKEV 217 (219)
T ss_pred -CCcCHHHHHHHHHHcCCcEEEHHHHHHHh
Confidence 59999999999999999999999999974
No 21
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=100.00 E-value=1.8e-56 Score=415.25 Aligned_cols=193 Identities=59% Similarity=1.024 Sum_probs=184.8
Q ss_pred hhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCCChHHHHHHHHHHHHc
Q 016051 173 LVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAA 252 (396)
Q Consensus 173 lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~ 252 (396)
+|+++++.++||.||+|++++|++..++.+|+|||+|+|.+++|||||||++|+++|+|++.+|||++||++||++|+++
T Consensus 1 ~V~~~~~~~l~t~~G~f~~~~y~d~~~~~~H~ALv~Gdi~~~~~~lVRVH~~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~ 80 (193)
T cd00641 1 LVEKVAEAPLPTRFGDFRIVAFEDTDDGKEHVALVKGDPADGEPVLVRVHSECLTGDVFGSLRCDCGPQLEEALEEIAEE 80 (193)
T ss_pred CeEEEEEEEcccCcccEEEEEEEECCCCcEEEEEEeCCCCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHh
Confidence 37889999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeeccCCccccccccc
Q 016051 253 GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKG 332 (396)
Q Consensus 253 G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~ 332 (396)
|+||||||+ |++++.|+.+|+++|.+|+.+.++.+++..++++.|.|+||+|||||++|||++||||||||.|+.+|++
T Consensus 81 g~GVlV~l~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGiGAQIL~dLGv~~mrLLs~~~~k~~~L~g 159 (193)
T cd00641 81 GGGVLLYLR-QEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGLAAQILRDLGIKSVRLLTNNPDKIDALEG 159 (193)
T ss_pred CCEEEEEEC-CCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHHHHHHHHHcCCCeEEECCCCHHHHHHHHh
Confidence 999999998 9999999999999999998888888787778889999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCChhhHHHHHHHHHhcCCCC
Q 016051 333 YGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 366 (396)
Q Consensus 333 ~Gi~V~e~vp~~~~~~~~n~~Yl~tK~~k~gH~l 366 (396)
|||+|++++|++.+.+++|++||.+|++||+|++
T Consensus 160 fglevv~~~~~~~~~~~~~~~y~~~k~~~~~~~~ 193 (193)
T cd00641 160 YGIEVVERVPLEVEPNEENKGYLKTKRDKMGHLL 193 (193)
T ss_pred CCCEEEEEeccCCCCChhhHHHHHhhHHhhccCC
Confidence 9999999999887888999999999999999986
No 22
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-55 Score=431.43 Aligned_cols=260 Identities=56% Similarity=0.805 Sum_probs=251.5
Q ss_pred CCCCCCCHHHHHHHHHHCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHh
Q 016051 1 MAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALA 80 (396)
Q Consensus 1 ~aA~~~t~e~v~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la 80 (396)
++|...+++.++|.++|++|++|++|..+...+|.||+|+....+.+...++|||+||.+++++||||++||+.|++.|+
T Consensus 95 ~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~~~titvd~~~gt~TgVsahde~~T~~~l~ 174 (357)
T KOG1284|consen 95 IAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYETAFTITVDRAHGTVTGVSAHDEAYTGETLA 174 (357)
T ss_pred eecccccchhhhhhhhcCCceechhhhhcccccccccccccccccccccccceeEEEehhcCccceeEEecccccchhhc
Confidence 57889999999999999999999999999999999999998644667789999999999999999999999999999999
Q ss_pred c-CCCCCCccCCCCccceeeee-cCCccccCchhHHHHHHHHHhCCCCcEEEEEEecC-CCcccChhHHHHHHHhCCCcE
Q 016051 81 C-RDSKPEDFNRPGHIFPLKYR-EGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKI 157 (396)
Q Consensus 81 ~-~~~~~~df~~PGHv~Pl~a~-~ggvl~R~GhtEaavdL~rlAgl~Paavi~ei~~~-dg~~a~~~~l~~fA~~h~L~~ 157 (396)
+ ....|+||.||||++|++.+ +|||++|.||||++||||.++|+.|.+++||++++ +|.|++.+++..||.+|++|+
T Consensus 175 s~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~gl~pl~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~ 254 (357)
T KOG1284|consen 175 SARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAGLYPLGVLGELVVQADGSMARLPDCRSFAAEHAIPL 254 (357)
T ss_pred ccccCChhhhccccccccceeecCCCeEEEccccccchhHHHHcCCCchhhhhhhhhcCCcccccCccHhhhhHhhcCCh
Confidence 9 57889999999999999999 69999999999999999999999999999999988 899999999999999999999
Q ss_pred EeHhhHHHHHhhhhhhhhhcccccccCCcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCC
Q 016051 158 ISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD 237 (396)
Q Consensus 158 iti~dLi~yr~~~e~lV~~~~~~~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~Cd 237 (396)
++++|++.|+..+...|+++..+++||.+|.|..++|++..++.||++.++|.+-.....+||+|++|+++|+||+.+|+
T Consensus 255 ~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~~~g~v~~~~kie~r~h~e~l~~~i~~~~~~t 334 (357)
T KOG1284|consen 255 ISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIASVEGEVYLGTKIEVRGHLECLPDDIFGNRKRT 334 (357)
T ss_pred hhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccccceEEeechhhhheeehhcccchhcCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCEEEEEE
Q 016051 238 CGNQLALAMKQIEAAGRGVLVYL 260 (396)
Q Consensus 238 C~~qL~~Al~~I~~~G~GVlvYL 260 (396)
|+.||+-+|++|.++|+|+++||
T Consensus 335 ~~sq~~~~~r~~e~~g~~~~~al 357 (357)
T KOG1284|consen 335 GGSQLNYFMRTIEAAGRGVFVAL 357 (357)
T ss_pred CccHHHHHHHHHHhhcceeEEeC
Confidence 99999999999999999999996
No 23
>PRK07198 hypothetical protein; Validated
Probab=100.00 E-value=4.6e-42 Score=343.15 Aligned_cols=249 Identities=27% Similarity=0.441 Sum_probs=190.9
Q ss_pred Cccceeeee---cCCccccCc--hhHHHHHHHH------HhCCCCcEEEEEEecCCCccc-----Chh--HHHHHHHhCC
Q 016051 93 GHIFPLKYR---EGGVLKRAG--HTEASVDLAV------LAGLEPVAVLCEIVDDDGSMA-----RLP--KLRQFAQTEN 154 (396)
Q Consensus 93 GHv~Pl~a~---~ggvl~R~G--htEaavdL~r------lAgl~Paavi~ei~~~dg~~a-----~~~--~l~~fA~~h~ 154 (396)
||+.|-.-. +.|+-.|+- -|.|-+.|.+ ...|.|-+-|| ++.|+.. -.+ +|...|+++|
T Consensus 109 g~~~~~~~~~~~~~~~dirptia~t~a~~~~~e~~~~~~~g~l~~dg~i~---~~~g~~~vtk~av~pvwylpgva~rfg 185 (418)
T PRK07198 109 GHLVAEVFADEIAAGYDIRPTIAVTKAHINLPEIHDAIAAGRLKPDGKIL---LANGDVVVTKAAIEPVWYLPGVAERFG 185 (418)
T ss_pred ccchHHHHHHHHhcCCCccchhhhhhhhcccHHHHHHHHcCCCCCCCeee---cCCCcEEEEEeeecccccccchHHHcC
Confidence 565554331 246777765 3666665553 45688888885 3556543 222 7888999999
Q ss_pred CcEEeHhhHHHHHhhhhhhhhhcccc--cccCCcccEEEEEEEecCCCceEEEEEeccCC----CCCcceEEeCcCccch
Q 016051 155 LKIISIADLIRYRRKRDRLVELAAAA--PIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIG----DGQDILVRVHSECLTG 228 (396)
Q Consensus 155 L~~iti~dLi~yr~~~e~lV~~~~~~--~lpT~~G~F~~~~y~~~~~g~eH~ALv~Gd~~----~~~~vlVRVHs~cltg 228 (396)
+.-. +|-. .+.|...-- +|-|+- ++++|+....+.+|+ ++|+++ +..|+||||||+|++|
T Consensus 186 ~~e~---~lrr------~lfe~t~g~~pel~t~~---~~~vf~p~~gg~~~~--i~G~p~~~~d~~~PVLVRVHSeC~tg 251 (418)
T PRK07198 186 VSET---DLRR------TLFEQTGGMFPELVTRP---DLEVFLPPIGGQTVY--IFGDVTDLADPETELTCRVHDECNGS 251 (418)
T ss_pred CCHH---HHHH------HHHHHcCCCCceeeecc---ceEEEcCCCCCeeEE--EECCcccccCCCCCceEEEecccccc
Confidence 8732 2211 123332211 233432 688999999999954 889985 3568999999999999
Q ss_pred hhcCCCCCCChHHH----HHHHHHHHHcCCEEEEEEeCCCCCCcchHHHhhhhhcccC--CCCchhhh----hh-cCCCC
Q 016051 229 DIFGSARCDCGNQL----ALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDD--GHDTVEAN----EE-LGLPV 297 (396)
Q Consensus 229 Dvfgs~~CdC~~qL----~~Al~~I~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd~--g~dtv~An----~~-lg~~~ 297 (396)
|+|||.+|||+.|| ++||++|+++|.||||||+ ||||++||.+|+++|++|+. |.||++|| .. +|+ .
T Consensus 252 DVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLr-QEGRgiGLvnKl~aY~~qk~q~G~DT~da~~~rte~~~G~-~ 329 (418)
T PRK07198 252 DVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNR-KEGRALGEVTKFLVYNARKRQVGGDTAATYFARTECVAGV-Q 329 (418)
T ss_pred ccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeC-CCCcchhHHHHHHHHhhhhhccCCchhhhhhcccccccCC-C
Confidence 99999999999884 6889999999999999998 99999999999999999853 89999975 22 454 6
Q ss_pred CCcChhHHHHHHHHhCCCee-eeccCCcccccccccCCcEEEEEeecCCCCChhhHH-HHHHHHH
Q 016051 298 DSREYGIGAQILRDLGVRTM-KLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKR-YLETKRA 360 (396)
Q Consensus 298 D~R~ygi~aqIL~dLGv~~i-rLLTNnP~K~~aL~~~Gi~V~e~vp~~~~~~~~n~~-Yl~tK~~ 360 (396)
|+|+||+|||||++|||++| |||||||.|+.+|++|||+|++++|++...+|+..+ =+.+|..
T Consensus 330 D~RdyGlGAQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl~~~~~p~d~~vei~ak~~ 394 (418)
T PRK07198 330 DMRFQELMPDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPIPDELIPADARVEIDAKKA 394 (418)
T ss_pred cceehhHHHHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEeccCcCCCccccccchhhhhh
Confidence 99999999999999999999 999999999999999999999999998888887543 3444443
No 24
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism]
Probab=99.71 E-value=2.1e-18 Score=170.03 Aligned_cols=191 Identities=25% Similarity=0.301 Sum_probs=162.9
Q ss_pred ccccccC-CcccEEEEEEEecCCCceEEEEEeccC---------------------------------------------
Q 016051 178 AAAPIPT-MWGPFKAHCYRSLLDGIEHIAMVKGEI--------------------------------------------- 211 (396)
Q Consensus 178 ~~~~lpT-~~G~F~~~~y~~~~~g~eH~ALv~Gd~--------------------------------------------- 211 (396)
-+.++|+ ++|.|-++.|....++.+|++++.++.
T Consensus 66 i~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~de~~~~ 145 (357)
T KOG1284|consen 66 IPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKNDDETYET 145 (357)
T ss_pred hhhhhhcccCCcEEEEEecccccCCCCcceecccccchhhhhhhhcCCceechhhhhccccccccccccccccccccccc
Confidence 3345554 568899999999899999999888863
Q ss_pred --------CCCCcceEEeCcCccchhhcCCCCCCChHHHHHHHHHHH---H-cCCEEEEEEeCCCCCCcchHHHhhhhhc
Q 016051 212 --------GDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIE---A-AGRGVLVYLRGHEGRGIGLGHKLRAYNL 279 (396)
Q Consensus 212 --------~~~~~vlVRVHs~cltgDvfgs~~CdC~~qL~~Al~~I~---~-~G~GVlvYLr~qEgRgiGl~~Kl~ay~l 279 (396)
+.+..+.||.|++|.|+..++|.+|+|+.|++.+=..|. + .| |||.|++ |+++|++|..++.+|+|
T Consensus 146 ~~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~G-GVl~r~g-htea~vdL~~l~gl~pl 223 (357)
T KOG1284|consen 146 AFTITVDRAHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDG-GVLERLG-HTEAGVDLCELAGLYPL 223 (357)
T ss_pred ceeEEEehhcCccceeEEecccccchhhcccccCChhhhccccccccceeecCC-CeEEEcc-ccccchhHHHHcCCCch
Confidence 123458999999999999999999999999999988887 6 46 9999997 99999999999999999
Q ss_pred ccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeeccCCcccccccccCC--cEEEEEeecCCCCCh---hh---
Q 016051 280 QDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYG--LAIAGRIPLLTPITM---EN--- 351 (396)
Q Consensus 280 qd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~~G--i~V~e~vp~~~~~~~---~n--- 351 (396)
|+-|.+++++|..+-+++|.|.|+..-.|+-+++..-+|+|+|||+|+...+..- ...++|+++...... ++
T Consensus 224 ~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~~~v~~~s~~~~~~~~~~r~~~~~~s~~~~~E~i~~ 303 (357)
T KOG1284|consen 224 GVLGELVVQADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRPEKVENISDAPQPTKCVERPAMCFKSWLDGKEGIAS 303 (357)
T ss_pred hhhhhhhhcCCcccccCccHhhhhHhhcCChhhhhhHHHHHhcChhhhhcccCCCcCceeeeccccceeehhcccccccc
Confidence 9999999999999999999999999999999999999999999999999888765 466788876433221 11
Q ss_pred ---HHHHHHHHHhcCCCCCCCC
Q 016051 352 ---KRYLETKRAKMGHVYGLNS 370 (396)
Q Consensus 352 ---~~Yl~tK~~k~gH~l~~~~ 370 (396)
.-|+.+|.++|+|.+..+.
T Consensus 304 ~~g~v~~~~kie~r~h~e~l~~ 325 (357)
T KOG1284|consen 304 VEGEVYLGTKIEVRGHLECLPD 325 (357)
T ss_pred cceEEeechhhhheeehhcccc
Confidence 3499999999999997654
No 25
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=83.06 E-value=3.3 Score=45.19 Aligned_cols=88 Identities=18% Similarity=0.360 Sum_probs=61.4
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceE-E----eCcCccchhhcCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 016051 192 HCYRSLLDGIEHIAMVKGEIGDGQDILV-R----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 266 (396)
Q Consensus 192 ~~y~~~~~g~eH~ALv~Gd~~~~~~vlV-R----VHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GVlvYLr~qEgR 266 (396)
+.|+...+ ...++|+.|-=++-+|... . +=+.+..||||-|.. ..|.-+|++.+...+.|||+.+-|-.
T Consensus 33 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~~~~~~~Gvl~iv~NYt-- 106 (574)
T TIGR02361 33 VVYRRDLN-KDKVSLISGGGSGHEPAHAGFVGKGMLTAAVAGDVFASPS---TKQILAAIRAVVGSEAGTLLIVKNYT-- 106 (574)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHHhcCCCCcEEEEecccH--
Confidence 45554443 5689999875333333210 0 223477899999876 57899999999875779998876433
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCC
Q 016051 267 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 315 (396)
Q Consensus 267 giGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~ 315 (396)
-|--+|++++++++.-|++
T Consensus 107 ------------------------------GD~lnF~~A~e~a~~eg~~ 125 (574)
T TIGR02361 107 ------------------------------GDRLNFGLAAEKAKAEGYN 125 (574)
T ss_pred ------------------------------HHhhhHHHHHHHHHhCCCc
Confidence 3667899999999999985
No 26
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=81.27 E-value=4.7 Score=41.17 Aligned_cols=87 Identities=20% Similarity=0.308 Sum_probs=60.0
Q ss_pred EEEecCCCceEEEEEeccCCCCCcceE-----EeCcCccchhhcCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 016051 193 CYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 267 (396)
Q Consensus 193 ~y~~~~~g~eH~ALv~Gd~~~~~~vlV-----RVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GVlvYLr~qEgRg 267 (396)
.|+...+ ...++|+.|-=++-+|... =+=+.|..||+|-|.. ..|.-+|++.+.. +.|||+..-|-.
T Consensus 36 v~~~~~~-~~kV~lIsGGGSGHEPah~GfVG~GmLdaav~G~VFaSPs---~~~Il~ai~av~~-~~GvL~iv~NYt--- 107 (331)
T PRK14481 36 IVRKDKP-PGKVALVSGGGSGHEPAHAGFVGEGMLDAAVCGAVFTSPT---PDQILEAIKAVDT-GAGVLLIVKNYS--- 107 (331)
T ss_pred EEecCCC-CCcEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcH---
Confidence 4554433 4678999875333333210 0224478899999876 4789999999864 569988775333
Q ss_pred cchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCe
Q 016051 268 IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRT 316 (396)
Q Consensus 268 iGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~ 316 (396)
-|--+|++|+++++.-|++-
T Consensus 108 -----------------------------GD~lnF~lA~E~a~~eGi~v 127 (331)
T PRK14481 108 -----------------------------GDVMNFEMAAELAEMEGIEV 127 (331)
T ss_pred -----------------------------HHhccHHHHHHHHHhCCCCE
Confidence 36778999999999999863
No 27
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=80.65 E-value=5.1 Score=40.90 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=60.3
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceE-----EeCcCccchhhcCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 016051 192 HCYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 266 (396)
Q Consensus 192 ~~y~~~~~g~eH~ALv~Gd~~~~~~vlV-----RVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GVlvYLr~qEgR 266 (396)
+.|+...+....++++.|-=++-+|... =+=+.|..||+|-|.. ..|.-+|++.+.. +.|||+..-|-.
T Consensus 35 vv~~~~~~~~~kV~lIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~iv~NYt-- 108 (329)
T TIGR02363 35 VIVRKDKKVNGKVALVSGGGSGHEPAHAGFVGYGMLDAAVPGEVFTSPT---PDQILEAIKAVDQ-GAGVLLIVKNYT-- 108 (329)
T ss_pred EEEeCCCCCCCCEEEEecCCccccccccccccCCccceeeeccccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcH--
Confidence 3455444434678999875333333211 0223477899999876 5789999988765 569988775333
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCC
Q 016051 267 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 315 (396)
Q Consensus 267 giGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~ 315 (396)
-|--+|++|++.++.-|++
T Consensus 109 ------------------------------GD~lnF~mA~E~a~~eGi~ 127 (329)
T TIGR02363 109 ------------------------------GDVMNFEMAAELAEDEGIK 127 (329)
T ss_pred ------------------------------HHhccHHHHHHHHHHcCCc
Confidence 3677899999999999985
No 28
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=78.37 E-value=7.1 Score=40.26 Aligned_cols=87 Identities=22% Similarity=0.365 Sum_probs=57.5
Q ss_pred EEEecCCCceEEEEEeccCCCCCcceE-E----eCcCccchhhcCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 016051 193 CYRSLLDGIEHIAMVKGEIGDGQDILV-R----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 267 (396)
Q Consensus 193 ~y~~~~~g~eH~ALv~Gd~~~~~~vlV-R----VHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GVlvYLr~qEgRg 267 (396)
.|+........++|+.|-=++-+|... . +=+.+..||+|-|.. ..|.-+|++.+. .|.|||+..-|-.|
T Consensus 35 v~~~~~~~~~kValIsGGGSGHEPah~GyVG~GmLdAAv~G~VFaSPs---~~qI~~ai~av~-~~~GvLlivkNYtG-- 108 (356)
T PRK11468 35 VTRADAPVAGKVALLSGGGSGHEPMHCGFVGQGMLDGACPGEIFTSPT---PDQMFECAMQVD-GGEGVLLIIKNYTG-- 108 (356)
T ss_pred EEeCCCCCCCcEEEEecCCccccccccceecCCcccceeeccccCCCC---HHHHHHHHHhhc-CCCCEEEEecccHH--
Confidence 344433324678898875333333211 0 223477899999876 578999999975 55699988764433
Q ss_pred cchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCC
Q 016051 268 IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 315 (396)
Q Consensus 268 iGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~ 315 (396)
|--+|++|+++++.-||+
T Consensus 109 ------------------------------DvlNF~mAaE~a~~eGi~ 126 (356)
T PRK11468 109 ------------------------------DVLNFETATELLHDSGVK 126 (356)
T ss_pred ------------------------------hhccHHHHHHHHHhCCCc
Confidence 566788888888888875
No 29
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=77.28 E-value=6.8 Score=39.97 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=58.9
Q ss_pred EEEecCCCceEEEEEeccCCCCCcceE-----EeCcCccchhhcCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 016051 193 CYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 267 (396)
Q Consensus 193 ~y~~~~~g~eH~ALv~Gd~~~~~~vlV-----RVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GVlvYLr~qEgRg 267 (396)
.|+...+ ...++|+.|-=++-+|... =+=+.+..||+|-|.. ..|.-+|++.+.. |.|||+..-|-.
T Consensus 33 v~~~~~~-~~kValIsGGGSGHEPah~GfVG~GmLdAav~G~VFaSPs---~~~I~~ai~av~~-~~GvL~ivkNYt--- 104 (326)
T TIGR02362 33 IYDSNFD-DQQIPIISGGGSGHEPAHWGYVGEGMLSAAIMGDVFVPPT---AQDILEAIRQVDR-GKGVFVIIKNFE--- 104 (326)
T ss_pred EEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhcC-CCCEEEEeccCH---
Confidence 4444333 5678999875333333211 0223477899999886 4789999999865 569998776333
Q ss_pred cchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCC
Q 016051 268 IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 315 (396)
Q Consensus 268 iGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~ 315 (396)
-|--+|++|++.++.-|++
T Consensus 105 -----------------------------GD~lNF~mA~E~a~~eGi~ 123 (326)
T TIGR02362 105 -----------------------------ADLSEFSQAIQQARQEGRQ 123 (326)
T ss_pred -----------------------------HHHhhHHHHHHHHHHcCCc
Confidence 3667899999999999985
No 30
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=77.27 E-value=2 Score=43.72 Aligned_cols=86 Identities=26% Similarity=0.531 Sum_probs=51.6
Q ss_pred EEEecCCCceEEEEEeccCCCCCcc---eE--EeCcCccchhhcCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 016051 193 CYRSLLDGIEHIAMVKGEIGDGQDI---LV--RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 267 (396)
Q Consensus 193 ~y~~~~~g~eH~ALv~Gd~~~~~~v---lV--RVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GVlvYLr~qEgRg 267 (396)
.|+... ....++|+.|-=++-+|. .| =+=+.|..||+|-|.. ..|.-+|++.+ ..+.|||+.+-|-.|
T Consensus 20 v~~~~~-~~~kV~lIsGGGSGHEP~~~GfVG~GmLdAav~G~VFaSPs---~~qI~~ai~~~-~~~~Gvl~iv~NYtG-- 92 (325)
T PF02733_consen 20 VYRKDI-PKDKVALISGGGSGHEPAHAGFVGKGMLDAAVCGDVFASPS---ADQILAAIKAV-DSGKGVLLIVKNYTG-- 92 (325)
T ss_dssp EEETT---TTS-EEEEEEEESSTTTTGGGBSCTSBSEEEEEEETS------HHHHHHHHHHH--SSS-EEEEEESSHH--
T ss_pred EEeCCC-CCCCEEEEecCCCCcccchhhhccCCccceEeeCCCcCCCC---HHHHHHHHHhc-cCCCCEEEEEecchH--
Confidence 444333 566788888643322331 11 1223477899999876 57999999998 556799988764332
Q ss_pred cchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCC
Q 016051 268 IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 315 (396)
Q Consensus 268 iGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~ 315 (396)
|--+|++|+++++.-|++
T Consensus 93 ------------------------------D~lNF~~A~E~a~~~Gi~ 110 (325)
T PF02733_consen 93 ------------------------------DVLNFGMAAEKARAEGIK 110 (325)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTT--
T ss_pred ------------------------------HHhhHHHHHHHHHhCCCC
Confidence 556799999999999984
No 31
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=75.55 E-value=8.7 Score=39.24 Aligned_cols=86 Identities=21% Similarity=0.382 Sum_probs=58.6
Q ss_pred EEEecCCCceEEEEEeccCCCCCcceE-----EeCcCccchhhcCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCCC
Q 016051 193 CYRSLLDGIEHIAMVKGEIGDGQDILV-----RVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRG 267 (396)
Q Consensus 193 ~y~~~~~g~eH~ALv~Gd~~~~~~vlV-----RVHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GVlvYLr~qEgRg 267 (396)
.|+.... ...++|+.|-=++-+|... =+=+.|..||+|-|.. ..|.-+|++.+.. |.|||+..-|-.
T Consensus 35 v~~~~~~-~~kV~lIsGGGSGHEPah~GyVG~GmLdAav~G~VFaSPs---~~qI~~ai~av~~-~~GvL~ivkNYt--- 106 (329)
T PRK14483 35 VYDIEKD-DQLVPIISGGGSGHEPAHIGYVGKGMLTAAVNGSIFTPPT---AEQILAATRLVPK-GKGVFFIIKNFE--- 106 (329)
T ss_pred EEeCCCC-CCcEEEEecCCccccccccccccCCccceeEeccccCCCC---HHHHHHHHHhhcC-CCCEEEEecccH---
Confidence 4554333 5678999875333333210 0223477899999876 5789999988765 569988776433
Q ss_pred cchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCC
Q 016051 268 IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 315 (396)
Q Consensus 268 iGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~ 315 (396)
-|--+|++|+++++.-|++
T Consensus 107 -----------------------------GDvlnF~mA~E~a~~eGi~ 125 (329)
T PRK14483 107 -----------------------------ADVAEFSAAIQIARQEGRQ 125 (329)
T ss_pred -----------------------------HHhhhHHHHHHHHHhCCCc
Confidence 3666799999999988885
No 32
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=71.72 E-value=9.3 Score=41.76 Aligned_cols=87 Identities=21% Similarity=0.361 Sum_probs=59.1
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceE-E----eCcCccchhhcCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 016051 192 HCYRSLLDGIEHIAMVKGEIGDGQDILV-R----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 266 (396)
Q Consensus 192 ~~y~~~~~g~eH~ALv~Gd~~~~~~vlV-R----VHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GVlvYLr~qEgR 266 (396)
+.|+...+ ...++|+.|-=++-+|... . +=+.|..||||-|.. ..|.-+|++.+.. |.|||+..-|-.
T Consensus 34 vi~~~~~~-~~kV~lisGGGSGHEP~h~G~VG~Gml~aav~G~vFaSPs---~~~i~~ai~~v~~-~~Gvl~iv~NYt-- 106 (568)
T PRK14479 34 VVRRTPTP-EGKVAVVSGGGSGHEPAFAGYVGPGMLDAAVCGNVFTSPS---ADQVYAAIRAADG-GAGVLLIVGNYA-- 106 (568)
T ss_pred EEEecCCC-CCceEEEecCCccccccccccccCCccceeeccCccCCCC---HHHHHHHHHhccC-CCCEEEEeCCcH--
Confidence 34444333 4678999875333333211 0 223477899999876 5789999988864 569988776433
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCC
Q 016051 267 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 315 (396)
Q Consensus 267 giGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~ 315 (396)
-|--+|++++++++.-|++
T Consensus 107 ------------------------------GD~lnF~~A~e~a~~~g~~ 125 (568)
T PRK14479 107 ------------------------------GDVMNFGLAAELARAEGID 125 (568)
T ss_pred ------------------------------HHHhhHHHHHHHHHhcCCc
Confidence 3667899999999999985
No 33
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=71.12 E-value=11 Score=41.39 Aligned_cols=87 Identities=17% Similarity=0.319 Sum_probs=58.8
Q ss_pred EEEEecCCCceEEEEEeccCCCCCcceE-E----eCcCccchhhcCCCCCCChHHHHHHHHHHHHcCCEEEEEEeCCCCC
Q 016051 192 HCYRSLLDGIEHIAMVKGEIGDGQDILV-R----VHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGR 266 (396)
Q Consensus 192 ~~y~~~~~g~eH~ALv~Gd~~~~~~vlV-R----VHs~cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GVlvYLr~qEgR 266 (396)
+.|+...+ ...++||.|-=++-+|... . +=+.+..||||-|.. ..|.-+|++.+. .|.|||+..-|-.|
T Consensus 37 vv~~~~~~-~~kV~lisGGGSGHEPah~G~VG~Gml~aav~G~vFaSPs---~~qi~~ai~~v~-~~~Gvl~ivkNYtG- 110 (584)
T PTZ00375 37 VVVRSDID-KTKVLLISGGGSGHEPAHAGFVGKGWLTAAVCGSVFASPS---TKHVLAAIEYVP-NGPGCLLIVKNYTG- 110 (584)
T ss_pred EEEeCCCC-CCcEEEEecCCccccccccccccCCccceeecccccCCCC---HHHHHHHHHHhc-CCCCEEEEecccHH-
Confidence 44554333 4678999875333333211 0 223467899999876 578999999776 45699988764433
Q ss_pred CcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCC
Q 016051 267 GIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVR 315 (396)
Q Consensus 267 giGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~ 315 (396)
|--+|+++++.++.-|++
T Consensus 111 -------------------------------D~lnF~lA~e~a~~eGi~ 128 (584)
T PTZ00375 111 -------------------------------DILNFELAVEQARARGIQ 128 (584)
T ss_pred -------------------------------HHhhHHHHHHHHHhCCCc
Confidence 667899999999998885
No 34
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=55.47 E-value=3.5 Score=34.39 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCeeeeccCCccc-----ccccccCCcEEEEEeecCCCCChhhHHHHHHH
Q 016051 305 GAQILRDLGVRTMKLMTNNPSK-----YVGLKGYGLAIAGRIPLLTPITMENKRYLETK 358 (396)
Q Consensus 305 ~aqIL~dLGv~~irLLTNnP~K-----~~aL~~~Gi~V~e~vp~~~~~~~~n~~Yl~tK 358 (396)
+.+-|++.| +++.++|||+.+ ...|+..|+++.. .-...+..--..||+.+
T Consensus 22 ~l~~L~~~g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~--~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 22 ALDALRERG-KPVVFLTNNSSRSREEYAKKLKKLGIPVDE--DEIITSGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHHTT-SEEEEEES-SSS-HHHHHHHHHHTTTT--G--GGEEEHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHhcCcCCCc--CEEEChHHHHHHHHHhc
Confidence 444566667 589999999866 4567889999753 11223344567888874
No 35
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=52.48 E-value=69 Score=34.63 Aligned_cols=94 Identities=21% Similarity=0.400 Sum_probs=67.8
Q ss_pred cccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcC---------ccchhhcCCCCCCChHHHHHHHHHHHHcCCEE
Q 016051 186 WGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSE---------CLTGDIFGSARCDCGNQLALAMKQIEAAGRGV 256 (396)
Q Consensus 186 ~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~---------cltgDvfgs~~CdC~~qL~~Al~~I~~~G~GV 256 (396)
+-+-+.+.|++......|++|+.|-=++-+|. |+. -.-||+|-|.. -.|...|++.+..+ .|.
T Consensus 31 ~~~~r~vl~~~~~~~~~kValiSGGGSGHEPt----HAGfVGkGmLtaai~G~iFASPs---tkqI~aairaV~~~-~Gt 102 (582)
T KOG2426|consen 31 HPEDRVVLFRDASAPKPKVALISGGGSGHEPT----HAGFVGKGMLTAAIAGDIFASPS---TKQILAAIRAVEGE-AGT 102 (582)
T ss_pred cccceEEEEeecCCCCCceEEEeCCCCCCCcc----cccccccchhhhhhhcccccCCc---HHHHHHHHHHhccC-Cce
Confidence 34557788888776678999999865544553 443 44689999875 46999999999544 588
Q ss_pred EEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeec
Q 016051 257 LVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLM 320 (396)
Q Consensus 257 lvYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLL 320 (396)
||+.-|=. -|--.||++++=-|..|++ ++|.
T Consensus 103 LlIVKNYT--------------------------------GD~LhFGLAaErara~G~~-ve~v 133 (582)
T KOG2426|consen 103 LLIVKNYT--------------------------------GDRLHFGLAAERARAAGIK-VELV 133 (582)
T ss_pred EEEEeccc--------------------------------cceeehhhhHHHHHhcCCc-eEEE
Confidence 88876332 2556789999999999984 4544
No 36
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=50.73 E-value=25 Score=29.98 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=29.4
Q ss_pred HHHH-HHhCCCeee--eccCCcccccccccCCcEEEEEee
Q 016051 306 AQIL-RDLGVRTMK--LMTNNPSKYVGLKGYGLAIAGRIP 342 (396)
Q Consensus 306 aqIL-~dLGv~~ir--LLTNnP~K~~aL~~~Gi~V~e~vp 342 (396)
.+++ +.+|+++|. ++.+|+.-+...+.+|.++++.++
T Consensus 102 ~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~ 141 (155)
T PF13420_consen 102 IEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELK 141 (155)
T ss_dssp HHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEE
T ss_pred HHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEe
Confidence 3445 789999987 678898889999999999998877
No 37
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=44.82 E-value=16 Score=36.80 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCeeeeccCCcccccccccCCcEEEEEee
Q 016051 304 IGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIP 342 (396)
Q Consensus 304 i~aqIL~dLGv~~irLLTNnP~K~~aL~~~Gi~V~e~vp 342 (396)
-..+.|+..||++|||..-+|.=+.++++-||+|.--||
T Consensus 17 ~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vp 55 (310)
T PF00332_consen 17 KVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVP 55 (310)
T ss_dssp HHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-
T ss_pred HHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccC
Confidence 467889999999999999999999999999999999988
No 38
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=43.95 E-value=52 Score=33.41 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=79.9
Q ss_pred HHHHHHHHhC--CCCcEEEEEEecCCC--cccChhHHHHHHHhCCCcEEeHhhHHHH--H---hhh--hhhhhhcccccc
Q 016051 114 ASVDLAVLAG--LEPVAVLCEIVDDDG--SMARLPKLRQFAQTENLKIISIADLIRY--R---RKR--DRLVELAAAAPI 182 (396)
Q Consensus 114 aavdL~rlAg--l~Paavi~ei~~~dg--~~a~~~~l~~fA~~h~L~~iti~dLi~y--r---~~~--e~lV~~~~~~~l 182 (396)
|+.-|-.|.+ ..-++|+..-=...| .-.......++|.+||||+.+-+.|..- . ..- +-.|.--.-.-|
T Consensus 13 a~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~l~~l~~D~ivvvayG~il 92 (307)
T COG0223 13 AVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEELAALDPDLIVVVAYGQIL 92 (307)
T ss_pred hHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHHHhccCCCEEEEEehhhhC
Confidence 3444445544 555555543222223 3455678999999999999988766531 1 000 001110011112
Q ss_pred c------CCcccEEEEE-----EEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCC-----ChHHHHHHH
Q 016051 183 P------TMWGPFKAHC-----YRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD-----CGNQLALAM 246 (396)
Q Consensus 183 p------T~~G~F~~~~-----y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~Cd-----C~~qL~~Al 246 (396)
| .++|-+.+|. ||. -.-.|.|+..||-..+ .++.++...--+||++...+|. ....|...|
T Consensus 93 p~~iL~~~~~G~iNvH~SLLPr~RG--aAPIq~aI~~Gd~~TG-vTim~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kL 169 (307)
T COG0223 93 PKEILDLPPYGCINLHPSLLPRYRG--AAPIQWAILNGDTETG-VTIMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKL 169 (307)
T ss_pred CHHHHhcCcCCeEEecCccCccccC--ccHHHHHHHcCCcccc-eEEEEccccCCCcceeeeEEeccCCcccHHHHHHHH
Confidence 2 2567788775 542 1346889999987655 5788999999999999988864 334566655
Q ss_pred HHHHH
Q 016051 247 KQIEA 251 (396)
Q Consensus 247 ~~I~~ 251 (396)
..++.
T Consensus 170 a~~ga 174 (307)
T COG0223 170 AELGA 174 (307)
T ss_pred HHHHH
Confidence 55444
No 39
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=39.32 E-value=99 Score=26.47 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=46.7
Q ss_pred CCCccCCCCccceeeeecCCccccCchhHHHHHH-HHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeHhhH
Q 016051 85 KPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL-AVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADL 163 (396)
Q Consensus 85 ~~~df~~PGHv~Pl~a~~ggvl~R~GhtEaavdL-~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti~dL 163 (396)
.+.+|.++|= +.|. .|..-+....+.-.++ .+|+...-+|++..+-..-..+ .+++.++|+++++|++.+..=
T Consensus 35 d~~~~l~~gE-lvlt---tg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~i--P~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 35 DPSDWLRGGE-LVLT---TGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEI--PEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred CHHHhCCCCe-EEEE---CCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccC--CHHHHHHHHHcCCCEEEeCCC
Confidence 5678888884 2232 2444444344433444 4556666566666553221223 378999999999999998875
Q ss_pred HHHH
Q 016051 164 IRYR 167 (396)
Q Consensus 164 i~yr 167 (396)
+.|.
T Consensus 109 ~~f~ 112 (123)
T PF07905_consen 109 VPFS 112 (123)
T ss_pred CCHH
Confidence 5544
No 40
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=37.54 E-value=23 Score=26.44 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=13.5
Q ss_pred hHHHHHHHhCCCcEEeHhhH
Q 016051 144 PKLRQFAQTENLKIISIADL 163 (396)
Q Consensus 144 ~~l~~fA~~h~L~~iti~dL 163 (396)
..+.+||+++++|++..+|-
T Consensus 5 ~~A~~~A~~~~lp~~~gSDA 24 (56)
T PF13263_consen 5 RRAAELAEKYGLPFTGGSDA 24 (56)
T ss_dssp -HHHHHHHHTT--EEEE--B
T ss_pred HHHHHHHHHcCCCeEeEEcc
Confidence 46889999999999999983
No 41
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.41 E-value=35 Score=33.12 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCeeeeccCC-----cccccccccCCcEEEEEeecCCCCCh------hhHHHHHHHHHh
Q 016051 304 IGAQILRDLGVRTMKLMTNN-----PSKYVGLKGYGLAIAGRIPLLTPITM------ENKRYLETKRAK 361 (396)
Q Consensus 304 i~aqIL~dLGv~~irLLTNn-----P~K~~aL~~~Gi~V~e~vp~~~~~~~------~n~~Yl~tK~~k 361 (396)
...+-|+.||+++|-++|-. ..-...|++.|++|+....+.+.-|- -..-|=-+|+-.
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~ 176 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVF 176 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhc
Confidence 46667999999999999842 22356789999999999887655443 345577777764
No 42
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.63 E-value=1.1e+02 Score=29.79 Aligned_cols=93 Identities=20% Similarity=0.128 Sum_probs=53.9
Q ss_pred HHHHHHHHHH-HHcCCEEEEEEeCCCCCCcchHHHhhhhhccc-CCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCee
Q 016051 240 NQLALAMKQI-EAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQD-DGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTM 317 (396)
Q Consensus 240 ~qL~~Al~~I-~~~G~GVlvYLr~qEgRgiGl~~Kl~ay~lqd-~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~i 317 (396)
.+|..|...+ ....--+|+|=-....=.+|- .++..-..+. .|...... -.....-|+.||+++|
T Consensus 57 ~~l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~-~~~~~~i~~~~~g~p~tt~------------~~A~~~AL~alg~~RI 123 (239)
T TIGR02990 57 PRLTEAAALILPDEELDVVAYSCTSASVVIGD-DEVTRAINAAKPGTPVVTP------------SSAAVDGLAALGVRRI 123 (239)
T ss_pred hhHHHHHHHhcCCCCCCEEEEccchhheecCH-HHHHHHHHhcCCCCCeeCH------------HHHHHHHHHHcCCCEE
Confidence 3455555555 336788999865333233442 2222211111 13322211 1235566999999999
Q ss_pred eeccCCccc-----ccccccCCcEEEEEeecCC
Q 016051 318 KLMTNNPSK-----YVGLKGYGLAIAGRIPLLT 345 (396)
Q Consensus 318 rLLTNnP~K-----~~aL~~~Gi~V~e~vp~~~ 345 (396)
-|+|-.+.. ...|+..|++|+....+..
T Consensus 124 alvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~ 156 (239)
T TIGR02990 124 SLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGL 156 (239)
T ss_pred EEECCCcHHHHHHHHHHHHhCCcEEeeeeccCC
Confidence 999966554 3458999999998776544
No 43
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=34.12 E-value=55 Score=33.78 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCeeeecc-CCcc--c-----ccccccCCcEEEEEeecCCCCChhhHHHHHH
Q 016051 304 IGAQILRDLGVRTMKLMT-NNPS--K-----YVGLKGYGLAIAGRIPLLTPITMENKRYLET 357 (396)
Q Consensus 304 i~aqIL~dLGv~~irLLT-NnP~--K-----~~aL~~~Gi~V~e~vp~~~~~~~~n~~Yl~t 357 (396)
-.+.-|-.-||++|-+++ -||. . +..|+..||+|.+. +.-+....|++|+..
T Consensus 57 ~cad~ii~~gi~rVVi~~D~d~~G~~~~~~~~~~L~~aGi~V~~~--l~~e~~~l~~~~~~~ 116 (360)
T PRK14719 57 QIADDLIAENISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNNL--IRKEIIKYSRGDLKD 116 (360)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCccchHHHHHHHHCCCEEEee--hHHHHHHHhHHhhhc
Confidence 377777788999999998 3442 3 57799999999542 233344456665543
No 44
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=30.83 E-value=73 Score=34.42 Aligned_cols=122 Identities=25% Similarity=0.336 Sum_probs=80.9
Q ss_pred HCCCceEecCCHHHHhhcCCCcccccCCCCCCCCCceEEEeeccCCCCCCCChhHHHHHHHHHhcCCCCCCccCCCCccc
Q 016051 17 HGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIF 96 (396)
Q Consensus 17 ~~~Glic~a~~~~~~~~L~Lp~m~~~~~n~~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~ 96 (396)
-..|.+|+-++++....|.+..-... ..+...-+|++++-.. |-||+-.+ + .........=|+.||-
T Consensus 82 lldg~~kiGLt~e~L~~La~~g~~~~--kvsrRD~~~v~i~rlv-ggTtvaaT------m--~iA~~~gI~vfaTggi-- 148 (614)
T KOG3009|consen 82 LLDGIIKIGLTPEELETLASSGPSAV--KVSRRDIASVVIVRLV-GGTTVAAT------M--IIAHAAGIVVFATGGI-- 148 (614)
T ss_pred hhcceeeecCCHHHHHHHhhcCcccc--ccccccccccceeeec-CCcchhhh------h--hhcccceEEEEecCCc--
Confidence 35799999999999999998655222 3445567888888764 55666433 1 1111223344777772
Q ss_pred eeeeecCCccccCchh-HHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeHh
Q 016051 97 PLKYREGGVLKRAGHT-EASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIA 161 (396)
Q Consensus 97 Pl~a~~ggvl~R~Ght-EaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti~ 161 (396)
|||-+-+-|+ .++-||-.+ |-.|++|+|+=|.. .++-+-..+|-+.++.++++..
T Consensus 149 ------ggvhr~An~smdisadl~el-grtpvavv~agvks---iLdip~tle~letq~V~vvtlg 204 (614)
T KOG3009|consen 149 ------GGVHRGANQSMDISADLTEL-GRTPVAVVSAGVKS---ILDIPKTLEYLETQGVVVVTLG 204 (614)
T ss_pred ------chhhhccccccchhhhhhhh-cCCcceEEecchhh---hccchhhhhhhccccEEEEEeC
Confidence 5553333322 356666665 88899999976653 6677888899999999988764
No 45
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=30.08 E-value=1e+02 Score=26.60 Aligned_cols=51 Identities=10% Similarity=0.240 Sum_probs=38.5
Q ss_pred cCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEe
Q 016051 108 RAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIIS 159 (396)
Q Consensus 108 R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~it 159 (396)
--.|+...+..++..|+...+++....+++-.+ .......+++..++|++-
T Consensus 81 ~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~-~~~~~~~i~~~~gip~LG 131 (134)
T cd03109 81 SINHAFLTIEAARIKGIILNGVLGNVIVEKEGL-ATLNVETIERLTGIPVLG 131 (134)
T ss_pred cHhHHHHHHHHHHhcCCceeEEEEccCCCccch-hhhhHHHHHHhcCCCEEE
Confidence 466888999999999999999998776653222 224577888888888764
No 46
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=30.06 E-value=94 Score=30.49 Aligned_cols=58 Identities=28% Similarity=0.308 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCcEEEEEEecCCC-----cccChhHHHHHHHhCCCcEEeHhhHHHHHhhhhhhh
Q 016051 113 EASVDLAVLAGLEPVAVLCEIVDDDG-----SMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLV 174 (396)
Q Consensus 113 EaavdL~rlAgl~Paavi~ei~~~dg-----~~a~~~~l~~fA~~h~L~~iti~dLi~yr~~~e~lV 174 (396)
|+=..|||--|+. -+||-||-+ +-....+++..|+++|+.|+||..|..+-.-.|..+
T Consensus 20 ~affa~ak~lg~s----~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~ 82 (272)
T COG4130 20 EAFFALAKRLGLS----KVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVSINALYPFNEWTEERV 82 (272)
T ss_pred HHHHHHHHHcCcc----eeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEEeeccccccccChHHH
Confidence 5778899999987 468888732 233567999999999999999999977654444443
No 47
>PLN02398 hydroxyacylglutathione hydrolase
Probab=28.21 E-value=6.5e+02 Score=25.68 Aligned_cols=141 Identities=15% Similarity=0.071 Sum_probs=78.2
Q ss_pred ccccCchhHHHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeHhhHHHHHhhhhhhhhhcccccccC
Q 016051 105 VLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPT 184 (396)
Q Consensus 105 vl~R~GhtEaavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti~dLi~yr~~~e~lV~~~~~~~lpT 184 (396)
++.-+|..+.-++..+-.|+...++++.=-..|-.. -+..|.++++.+++....-..+....+. .+.+.. ..
T Consensus 101 ~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~G----G~~~L~~~~ga~V~g~~~~~~~i~~~d~---~v~dGd-~i 172 (329)
T PLN02398 101 GVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTG----GNLELKARYGAKVIGSAVDKDRIPGIDI---VLKDGD-KW 172 (329)
T ss_pred EEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhC----CHHHHHHhcCCEEEEehHHhhhccCCcE---EeCCCC-EE
Confidence 344567777777777777888888887444444211 2345677788888765431111100000 011111 11
Q ss_pred CcccEEEEEEEecCCCceEEEEEeccCCCCCcceEEeCcCccchhhcCCCCCC-----ChHHHHHHHHHHHHcCCEEEEE
Q 016051 185 MWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCD-----CGNQLALAMKQIEAAGRGVLVY 259 (396)
Q Consensus 185 ~~G~F~~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs~cltgDvfgs~~Cd-----C~~qL~~Al~~I~~~G~GVlvY 259 (396)
..|.+++.++.-.-....|+++...+ .. ..++||.+.+..|. ...|+.++|++|.+-..-.+||
T Consensus 173 ~lgg~~l~vi~tPGHT~GhI~~~~~~----~~-------vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t~Vy 241 (329)
T PLN02398 173 MFAGHEVLVMETPGHTRGHISFYFPG----SG-------AIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIY 241 (329)
T ss_pred EECCeEEEEEeCCCcCCCCEEEEECC----CC-------EEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEE
Confidence 12444555554444445687775421 11 24589977665552 2358889999998766567777
Q ss_pred EeCCCC
Q 016051 260 LRGHEG 265 (396)
Q Consensus 260 Lr~qEg 265 (396)
- +||.
T Consensus 242 p-GHgy 246 (329)
T PLN02398 242 C-GHEY 246 (329)
T ss_pred C-CCCC
Confidence 5 4765
No 48
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=27.59 E-value=6.2e+02 Score=25.42 Aligned_cols=70 Identities=21% Similarity=0.187 Sum_probs=40.2
Q ss_pred CceEecCCHH-HH-hhcCCCcccccCCCC-------CCCCCceEEEeeccCCCCCCCChhHHHHHHHHHhcCCC---CCC
Q 016051 20 GIVCVSMKGE-DL-ERLELPLMVNHKDNE-------EKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDS---KPE 87 (396)
Q Consensus 20 Glic~a~~~~-~~-~~L~Lp~m~~~~~n~-------~~~~t~FtvsVda~~g~~TGISa~DRa~Tir~la~~~~---~~~ 87 (396)
|+=.+.++.- .+ ..||+|.+--..-+. =...+.--|+||.- ++-| +...=++|||.+...-. .-+
T Consensus 37 Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d--~GyG-~~~~v~r~V~~~~~aGaagi~IE 113 (292)
T PRK11320 37 GFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDID--TGFG-GAFNIARTVKSMIKAGAAAVHIE 113 (292)
T ss_pred CCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECC--CCCC-CHHHHHHHHHHHHHcCCeEEEEe
Confidence 4555555553 33 567777653210000 01123345888873 5667 88888999999997654 356
Q ss_pred ccCCC
Q 016051 88 DFNRP 92 (396)
Q Consensus 88 df~~P 92 (396)
|-+.|
T Consensus 114 Dq~~p 118 (292)
T PRK11320 114 DQVGA 118 (292)
T ss_pred cCCCc
Confidence 75544
No 49
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=27.30 E-value=60 Score=26.13 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=24.2
Q ss_pred EEEEecCCCcc---cChhHHHHHHHhCCCcEEeHh
Q 016051 130 LCEIVDDDGSM---ARLPKLRQFAQTENLKIISIA 161 (396)
Q Consensus 130 i~ei~~~dg~~---a~~~~l~~fA~~h~L~~iti~ 161 (396)
.+.+++++|++ ++..++.+.|++.+|.+|-++
T Consensus 14 ~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~ 48 (76)
T PF05198_consen 14 EVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVS 48 (76)
T ss_dssp EEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEE
T ss_pred EEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEc
Confidence 45678888865 588999999999999998776
No 50
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=26.86 E-value=92 Score=22.57 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=17.8
Q ss_pred hhHHHHHHHhCCCcEEeHhhHHH
Q 016051 143 LPKLRQFAQTENLKIISIADLIR 165 (396)
Q Consensus 143 ~~~l~~fA~~h~L~~iti~dLi~ 165 (396)
+..+++||+++|.+.||.+.+..
T Consensus 21 r~~~E~~Ar~~G~~~IT~e~v~~ 43 (45)
T PF08369_consen 21 RDAAEKYARERGYDEITVEVVDA 43 (45)
T ss_dssp HHHHHHHHHHCT-SEE-HHHHHH
T ss_pred HHHHHHHHHHcCCCeECHHHHHh
Confidence 45789999999999999998754
No 51
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=25.45 E-value=1.5e+02 Score=29.75 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=50.4
Q ss_pred EEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeeccCCcccccccccCCcEE
Q 016051 258 VYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAI 337 (396)
Q Consensus 258 vYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~~Gi~V 337 (396)
||++ .+-||.|+..+|-.+ .-+.++..|++++.|.+++ .....-+.+|.+.
T Consensus 31 vaV~-p~~Rg~GiG~~Ll~~---------------------------l~~~a~~~g~~~i~L~t~~-~~~~fYek~GF~~ 81 (297)
T cd02169 31 VAVC-PKYQGEGLALKIVSE---------------------------LINKAYEEGIFHLFLFTKP-KNAKFFRGLGFKE 81 (297)
T ss_pred EEEC-HHHcCCCHHHHHHHH---------------------------HHHHHHHCCCCEEEEEEcc-cHHHHHHHCCCEE
Confidence 5666 777888888777543 2334677899999999864 3445567889887
Q ss_pred EEEee----cCCCCChhhHHHHHHHHH
Q 016051 338 AGRIP----LLTPITMENKRYLETKRA 360 (396)
Q Consensus 338 ~e~vp----~~~~~~~~n~~Yl~tK~~ 360 (396)
.+++. ....-.++.++|++....
T Consensus 82 ~~~~~~~~~~~~~gi~~~~~~~~~~~~ 108 (297)
T cd02169 82 LANASDEAVLLENGKPGIEDYLKNLPK 108 (297)
T ss_pred ecccCCeeeEecCCchHHHHHHHHHHh
Confidence 77222 223344788889887755
No 52
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=25.35 E-value=34 Score=28.47 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCeeeeccCCcccccccccCCcEE
Q 016051 304 IGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAI 337 (396)
Q Consensus 304 i~aqIL~dLGv~~irLLTNnP~K~~aL~~~Gi~V 337 (396)
.+.|++|.+| .+|-..+.++.|...++.+|...
T Consensus 5 ~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~ 37 (130)
T PF00107_consen 5 MAIQLAKAMG-AKVIATDRSEEKLELAKELGADH 37 (130)
T ss_dssp HHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE
T ss_pred HHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc
Confidence 4789999999 88888888999999999999543
No 53
>PTZ00330 acetyltransferase; Provisional
Probab=24.47 E-value=69 Score=26.90 Aligned_cols=54 Identities=26% Similarity=0.253 Sum_probs=37.6
Q ss_pred EEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeeccCCcccccccccCCcEE
Q 016051 258 VYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAI 337 (396)
Q Consensus 258 vYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~~Gi~V 337 (396)
+|+. .+-||.|+..+|-.+ ..+.++..|+.++.|-+ |+.-+.-.+.+|.+.
T Consensus 88 ~~V~-~~~rg~Gig~~l~~~---------------------------~~~~a~~~~~~~l~l~~-n~~a~~~y~k~GF~~ 138 (147)
T PTZ00330 88 VVVD-PSYRGQGLGRALISD---------------------------LCEIARSSGCYKVILDC-TEDMVAFYKKLGFRA 138 (147)
T ss_pred EEEC-HHHcCCCHHHHHHHH---------------------------HHHHHHHCCCCEEEEec-ChHHHHHHHHCCCEE
Confidence 5776 777888888877554 33345667888887766 455667778888887
Q ss_pred EEE
Q 016051 338 AGR 340 (396)
Q Consensus 338 ~e~ 340 (396)
.++
T Consensus 139 ~~~ 141 (147)
T PTZ00330 139 CER 141 (147)
T ss_pred ece
Confidence 653
No 54
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=23.05 E-value=17 Score=29.91 Aligned_cols=63 Identities=19% Similarity=0.460 Sum_probs=42.5
Q ss_pred hHHHHHHHHhCCCeeeeccCCcccccc-cccCCcEEEEEeecCCCCChhhH-------HHHHHHHHhcCCC
Q 016051 303 GIGAQILRDLGVRTMKLMTNNPSKYVG-LKGYGLAIAGRIPLLTPITMENK-------RYLETKRAKMGHV 365 (396)
Q Consensus 303 gi~aqIL~dLGv~~irLLTNnP~K~~a-L~~~Gi~V~e~vp~~~~~~~~n~-------~Yl~tK~~k~gH~ 365 (396)
..+..|.+..|-..+..|.+||...-. +.|.|.+.+..+.......+.+. .|.-.+....||.
T Consensus 23 ~~a~kl~~~yg~~ai~~l~~nPY~L~~~i~gi~F~~aD~iA~~~g~~~~d~~Ri~A~i~~~L~~~~~~Ght 93 (94)
T PF14490_consen 23 KLAMKLYKKYGDDAIEILKENPYRLIEDIDGIGFKTADKIALKLGIEPDDPRRIRAAILYVLREAEEQGHT 93 (94)
T ss_dssp HHHHHHHHHH-TTHHHHHHH-STCCCB-SSSSBHHHHHHHHHTTT--TT-HHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHhHHHHHHHHHChHHHHHHccCCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 468889999999999999999999877 88999998888886544444331 1333337777774
No 55
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=22.48 E-value=1.7e+02 Score=29.31 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=27.4
Q ss_pred CCcEEEEE-EecCCCcccChhHHHHHHHhCCCcEE
Q 016051 125 EPVAVLCE-IVDDDGSMARLPKLRQFAQTENLKII 158 (396)
Q Consensus 125 ~Paavi~e-i~~~dg~~a~~~~l~~fA~~h~L~~i 158 (396)
.+..|+.+ +.+.+|...+.+++.++|++||+.++
T Consensus 170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li 204 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVM 204 (393)
T ss_pred CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEE
Confidence 45556655 44678999999999999999999876
No 56
>PRK07505 hypothetical protein; Provisional
Probab=22.48 E-value=96 Score=31.52 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=31.9
Q ss_pred CCcEEEEEEecCCCcccChhHHHHHHHhCCCcEEeHhhH
Q 016051 125 EPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADL 163 (396)
Q Consensus 125 ~Paavi~ei~~~dg~~a~~~~l~~fA~~h~L~~iti~dL 163 (396)
.-+++|||-.+..|.+...+++.++|++|++.+| ++|.
T Consensus 180 ~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li-~DEa 217 (402)
T PRK07505 180 KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLY-IDDA 217 (402)
T ss_pred CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEE-EECc
Confidence 3578899988988999999999999999998775 4444
No 57
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.22 E-value=2.1e+02 Score=27.37 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCcEEEEEEecCCCcccChhHHHHHHHhCC---CcEEeHhhHHHHHhh
Q 016051 114 ASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTEN---LKIISIADLIRYRRK 169 (396)
Q Consensus 114 aavdL~rlAgl~Paavi~ei~~~dg~~a~~~~l~~fA~~h~---L~~iti~dLi~yr~~ 169 (396)
=|++..|-+|...++|+|-+ | |.+.+.++-+++| .++++++||+.+...
T Consensus 130 eai~~l~~~G~~V~gv~~iv-D------R~~~~~~~~~~~g~~~~sl~tl~dl~~~~~~ 181 (201)
T COG0461 130 EAVEALREAGAEVVGVAVIV-D------RQSGAKEVLKEYGVKLVSLVTLSDLLEVLYE 181 (201)
T ss_pred HHHHHHHHcCCeEEEEEEEE-e------cchhHHHHHHhcCCceEEEeeHHHHHHHHHh
Confidence 47899999999999999933 3 2377788889999 556677888877654
No 58
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=21.84 E-value=1.7e+02 Score=29.13 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=30.2
Q ss_pred CCcEEEEE-EecCCCcccChhHHHHHHHhCCCcEEeHhhH
Q 016051 125 EPVAVLCE-IVDDDGSMARLPKLRQFAQTENLKIISIADL 163 (396)
Q Consensus 125 ~Paavi~e-i~~~dg~~a~~~~l~~fA~~h~L~~iti~dL 163 (396)
.+..++.+ +.+..|...+..++.++|++|++.+| .+|.
T Consensus 174 ~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li-~De~ 212 (397)
T PRK06939 174 RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVM-VDDS 212 (397)
T ss_pred CCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEE-EECc
Confidence 45667766 56678988999999999999999987 4554
No 59
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.37 E-value=1.4e+02 Score=24.61 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCCCCC-cchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHH-hCCCeeee
Q 016051 242 LALAMKQIEAAGRGVLVYLRGHEGRG-IGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRD-LGVRTMKL 319 (396)
Q Consensus 242 L~~Al~~I~~~G~GVlvYLr~qEgRg-iGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~d-LGv~~irL 319 (396)
-.++++.+.+.|.-+++.= |...+- -.+.+||+. .|++.-+ +.- .=.-..++..|+. .+.+++-+
T Consensus 19 a~e~l~~L~~~g~~~~~lT-Nns~~s~~~~~~~L~~-----~Gi~~~~-~~i------~ts~~~~~~~l~~~~~~~~v~v 85 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLT-NNSSRSREEYAKKLKK-----LGIPVDE-DEI------ITSGMAAAEYLKEHKGGKKVYV 85 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEE-S-SSS-HHHHHHHHHH-----TTTT--G-GGE------EEHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEe-CCCCCCHHHHHHHHHh-----cCcCCCc-CEE------EChHHHHHHHHHhcCCCCEEEE
Confidence 5688899999997776655 455444 355555544 3433111 000 0012356677777 78899999
Q ss_pred ccCCcccccccccCCcE
Q 016051 320 MTNNPSKYVGLKGYGLA 336 (396)
Q Consensus 320 LTNnP~K~~aL~~~Gi~ 336 (396)
+.+ |.-...|.+.|++
T Consensus 86 lG~-~~l~~~l~~~G~e 101 (101)
T PF13344_consen 86 LGS-DGLREELREAGFE 101 (101)
T ss_dssp ES--HHHHHHHHHTTEE
T ss_pred EcC-HHHHHHHHHcCCC
Confidence 985 5556667777765
No 60
>PLN02880 tyrosine decarboxylase
Probab=20.61 E-value=1.8e+02 Score=31.01 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=42.0
Q ss_pred cccCchhHHHHHHHHHhCCCCcEEEEEEec-CCCcccChhHHHHHHHhCCCcE
Q 016051 106 LKRAGHTEASVDLAVLAGLEPVAVLCEIVD-DDGSMARLPKLRQFAQTENLKI 157 (396)
Q Consensus 106 l~R~GhtEaavdL~rlAgl~Paavi~ei~~-~dg~~a~~~~l~~fA~~h~L~~ 157 (396)
--+...-|.+++-.+.+|+.|.+|++..=. ..|.....+++.++|++||+.+
T Consensus 220 ~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 220 ALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred cCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEE
Confidence 345566778888788899999999987633 3488889999999999999976
No 61
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=20.26 E-value=2.9e+02 Score=30.58 Aligned_cols=105 Identities=17% Similarity=0.296 Sum_probs=59.6
Q ss_pred EEEEEecCCCceEEEEEeccCCCCCcceEEeCc-----Cccchh--hcCCCCCCChHHHHHHHHHHHHc--C--CEEEEE
Q 016051 191 AHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHS-----ECLTGD--IFGSARCDCGNQLALAMKQIEAA--G--RGVLVY 259 (396)
Q Consensus 191 ~~~y~~~~~g~eH~ALv~Gd~~~~~~vlVRVHs-----~cltgD--vfgs~~CdC~~qL~~Al~~I~~~--G--~GVlvY 259 (396)
++.+.+.....-++++.+|++.++-.| |++=. .-.+|- +|. .=++|++.|.+. . .|-||.
T Consensus 366 I~~~~~P~~~~Ggl~iL~GNLAP~GaV-iK~sav~~~~~~~~GpA~VF~--------see~a~~ai~~g~i~i~~GdVvV 436 (577)
T PRK13016 366 IRPLDNPVYAEGSLAVLRGNLAPDGAV-IKPAACDPKFLVHRGPALVFD--------SYPEMKAAIDDENLDVTPDHVMV 436 (577)
T ss_pred eCChhcccCCCCCEEEeecCCCCCceE-EEecccCCcccEEEeeEEEEC--------CHHHHHHHHhCCCcCCCCCeEEE
Confidence 555555555566899999999875432 23211 112332 443 346777777665 2 678888
Q ss_pred EeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcC---hhHHHHHHHHhCCCeeeeccCCcccccccccCCcE
Q 016051 260 LRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSRE---YGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLA 336 (396)
Q Consensus 260 Lr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~---ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~~Gi~ 336 (396)
||++--+|- +-+|. +.+...+|. .|+++|-|+|. -.+.+. .+|.-
T Consensus 437 IRyeGPkGg----------------------------PGMpE~~ml~~~~~~~~-~Gl~~valITD--GRfSG~-s~G~~ 484 (577)
T PRK13016 437 LRNAGPQGG----------------------------PGMPEWGMLPIPKKLLK-QGVRDMVRISD--ARMSGT-SYGAC 484 (577)
T ss_pred EeCCCCCCC----------------------------CCCcccccchhHHHHHH-cCCceeEEecc--CccCCc-cCCCE
Confidence 994433330 11222 333445565 88988999996 445444 34433
No 62
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=20.02 E-value=1.2e+02 Score=25.85 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=33.6
Q ss_pred EEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCCcChhHHHHHHHHhCCCeeeeccCCcccccccccCCcEE
Q 016051 258 VYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAI 337 (396)
Q Consensus 258 vYLr~qEgRgiGl~~Kl~ay~lqd~g~dtv~An~~lg~~~D~R~ygi~aqIL~dLGv~~irLLTNnP~K~~aL~~~Gi~V 337 (396)
+|+. ++-||-|+..++-.. .-+.++.+|+++|.|-++++. ..-.+.+|.+.
T Consensus 91 i~V~-~~~rg~GiG~~ll~~---------------------------~~~~a~~~g~~~i~l~~~~~N-~~~y~k~GF~~ 141 (150)
T PLN02706 91 VVVD-SAARGKGLGKKIIEA---------------------------LTEHARSAGCYKVILDCSEEN-KAFYEKCGYVR 141 (150)
T ss_pred EEEC-HHHcCCCHHHHHHHH---------------------------HHHHHHHcCCCEEEEEecccc-HHHHHHCcCEE
Confidence 4565 667777777666332 445567889999998776433 34556677665
Q ss_pred E
Q 016051 338 A 338 (396)
Q Consensus 338 ~ 338 (396)
.
T Consensus 142 ~ 142 (150)
T PLN02706 142 K 142 (150)
T ss_pred e
Confidence 4
Done!