Query 016052
Match_columns 396
No_of_seqs 162 out of 276
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 07:04:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v84_A Galactosylgalactosylxyl 100.0 9.4E-94 3.2E-98 685.1 17.4 234 142-391 2-253 (253)
2 2d0j_A Galactosylgalactosylxyl 100.0 1.5E-92 5.1E-97 674.5 20.7 230 142-387 2-241 (246)
3 3cu0_A Galactosylgalactosylxyl 100.0 1.6E-91 5.5E-96 676.4 17.0 224 140-380 18-265 (281)
4 1qg8_A Protein (spore coat pol 96.3 0.015 5.1E-07 51.7 9.1 103 143-253 1-109 (255)
5 3bcv_A Putative glycosyltransf 96.1 0.033 1.1E-06 48.9 10.0 96 142-254 4-106 (240)
6 3f1y_A Mannosyl-3-phosphoglyce 95.1 0.037 1.3E-06 55.1 7.3 106 142-253 93-201 (387)
7 4fix_A UDP-galactofuranosyl tr 94.5 0.091 3.1E-06 55.8 8.8 103 141-253 178-289 (657)
8 3ckj_A Putative uncharacterize 93.9 0.19 6.6E-06 47.7 8.8 104 140-253 45-153 (329)
9 1xhb_A Polypeptide N-acetylgal 93.0 0.25 8.4E-06 48.9 8.2 101 141-253 27-135 (472)
10 2z86_A Chondroitin synthase; G 92.6 0.53 1.8E-05 48.2 10.3 100 142-254 92-196 (625)
11 2ffu_A Ppgalnact-2, polypeptid 92.6 0.21 7.3E-06 50.0 7.2 100 141-253 64-167 (501)
12 2z86_A Chondroitin synthase; G 92.4 0.59 2E-05 47.8 10.3 98 141-253 373-475 (625)
13 2d7i_A Polypeptide N-acetylgal 90.5 0.56 1.9E-05 48.3 7.8 100 142-253 111-217 (570)
14 3l7i_A Teichoic acid biosynthe 90.0 0.058 2E-06 57.0 0.0 96 143-254 2-105 (729)
15 1fo8_A Alpha-1,3-mannosyl-glyc 87.8 1.8 6E-05 42.7 8.8 104 147-255 6-122 (343)
16 4hg6_A Cellulose synthase subu 84.8 2.9 9.8E-05 45.1 9.3 99 142-253 139-259 (802)
17 2bo4_A Mannosylglycerate synth 83.0 7.8 0.00027 38.7 11.0 103 146-253 3-114 (397)
18 2wvl_A Mannosyl-3-phosphoglyce 77.5 2.7 9.2E-05 42.6 5.5 98 144-256 54-183 (391)
19 2fy7_A Beta-1,4-galactosyltran 68.8 20 0.00068 33.9 9.0 82 141-248 63-145 (287)
20 2j48_A Two-component sensor ki 43.2 66 0.0023 23.4 6.4 77 178-268 5-82 (119)
21 3tj8_A Urease accessory protei 41.7 52 0.0018 29.3 6.4 53 144-206 79-139 (170)
22 3lte_A Response regulator; str 38.4 1E+02 0.0034 23.4 7.0 80 175-268 7-87 (132)
23 1olt_A Oxygen-independent copr 37.9 65 0.0022 32.1 7.2 87 143-233 106-204 (457)
24 3nrf_A APAG protein; structura 37.0 9.5 0.00032 32.2 0.7 18 232-249 80-98 (106)
25 3i42_A Response regulator rece 36.5 96 0.0033 23.4 6.6 78 178-269 7-85 (127)
26 3cg4_A Response regulator rece 36.5 90 0.0031 24.1 6.5 78 178-269 11-89 (142)
27 2zay_A Response regulator rece 35.5 1.1E+02 0.0039 23.7 7.0 78 178-269 12-90 (147)
28 3f6c_A Positive transcription 35.0 93 0.0032 23.7 6.3 77 177-268 4-81 (134)
29 2pln_A HP1043, response regula 30.9 82 0.0028 24.3 5.4 71 178-269 22-94 (137)
30 3t6k_A Response regulator rece 29.4 1.1E+02 0.0038 23.8 5.9 80 176-269 6-86 (136)
31 3to5_A CHEY homolog; alpha(5)b 29.0 1.3E+02 0.0045 24.9 6.6 83 174-269 12-95 (134)
32 1ear_A Urease accessory protei 27.8 86 0.003 27.1 5.4 55 143-207 76-136 (147)
33 1k68_A Phytochrome response re 27.8 1.7E+02 0.0058 22.0 6.6 80 178-269 6-93 (140)
34 2nxv_A ATP synthase subunits r 27.4 1.2E+02 0.0042 27.0 6.5 34 217-254 63-96 (249)
35 1gmu_A UREE; metallochaperone; 26.9 1.1E+02 0.0037 26.4 5.8 53 144-206 73-131 (143)
36 3gt7_A Sensor protein; structu 26.9 1.2E+02 0.0041 24.1 5.9 81 175-269 8-89 (154)
37 3cnb_A DNA-binding response re 26.6 2.1E+02 0.0072 21.7 7.2 79 178-269 12-92 (143)
38 3gl9_A Response regulator; bet 25.9 1.4E+02 0.0046 22.8 5.8 78 178-269 6-84 (122)
39 3kht_A Response regulator; PSI 25.3 1.3E+02 0.0046 23.2 5.7 83 175-269 6-89 (144)
40 1k66_A Phytochrome response re 24.9 2.1E+02 0.0071 21.9 6.7 80 178-269 10-100 (149)
41 2gkg_A Response regulator homo 24.7 1.3E+02 0.0045 22.2 5.4 76 178-267 9-86 (127)
42 2qgq_A Protein TM_1862; alpha- 22.4 1.3E+02 0.0045 28.0 6.0 71 159-230 71-151 (304)
43 1mb3_A Cell division response 21.3 2.3E+02 0.008 20.9 6.3 78 178-269 5-83 (124)
44 3cg0_A Response regulator rece 21.1 2E+02 0.0067 21.9 5.9 76 178-269 13-90 (140)
45 2lpm_A Two-component response 20.8 1.6E+02 0.0056 24.1 5.6 68 175-255 9-77 (123)
46 3f6p_A Transcriptional regulat 20.8 2.5E+02 0.0084 21.1 6.3 74 178-268 6-80 (120)
No 1
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=100.00 E-value=9.4e-94 Score=685.07 Aligned_cols=234 Identities=35% Similarity=0.605 Sum_probs=212.4
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC-CCHHHHHHHHhcCCceeEeeecCC--CC-------C
Q 016052 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA-ASYETAELLRKTGVMYRQLVSQKN--SS-------S 211 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~-~s~~va~lL~~sGl~y~HL~~~~~--~~-------~ 211 (396)
.|+||||||||+|++|+|||||||||||||| +||||||||+. .|++|+++|++|||+|+||+++++ ++ .
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~L~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~p~~~~~~~~~~~~ 80 (253)
T 1v84_A 2 LPTIHVVTPTYSRPVQKAELTRMANTLLHVP-NLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDP 80 (253)
T ss_dssp CCEEEEEEEECCSTTHHHHHHHHHHHHTTSS-SEEEEEEESSSSCCHHHHHHHHHHCCEEEEEECCCCHHHHCC------
T ss_pred CCEEEEEeCCCCccchhHHHHHHhhhhccCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeecCCCccccccccccCc
Confidence 4799999999999999999999999999997 99999999976 599999999999999999999863 11 2
Q ss_pred CCCcchhHHHHHHHHHHh-----hCCCeEEEEecCCCcchhhhhHhhhcccccceeEeeEeeccCcceeEecceee-CCe
Q 016052 212 VKDRGVHQRNLALEHIER-----HRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCN-GSQ 285 (396)
Q Consensus 212 ~~~rg~~QRN~AL~~Ir~-----~~l~GVVyFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~~~~vEGPvc~-~~k 285 (396)
..+||++|||+||+|||+ |+++||||||||||+||+|||||||+||+||+||||++|+ ..+|||+|+ +||
T Consensus 81 ~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR~i~~vgvWPVglvg~----~~~EgPv~~~~gk 156 (253)
T 1v84_A 81 RIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGG----LRYEAPRVNGAGK 156 (253)
T ss_dssp -CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHHTCSSEEECCEESCTT----SSEEEEEECTTSC
T ss_pred cccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHhccCeeEEEEEEeecC----cceecCeECCCCC
Confidence 257999999999999998 4789999999999999999999999999999999999997 569999999 899
Q ss_pred eeEEEcCCCCCCCcccccccceeeeeecccc-CCcCCCCCCCccccccccccCCcchhhHHHhhccCCCceeccCCCCCE
Q 016052 286 VIGWHTNEKSKRLRRFHVDMSGFAFNSTILW-DPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSR 364 (396)
Q Consensus 286 VvGW~t~~~~~~~R~fpiDMAGFA~Ns~lLw-dp~r~~rP~s~~~~~~d~vk~G~qEs~fl~~Lv~d~~~lEpla~~C~k 364 (396)
|+|||+.|.+ .|+||||||||||||++|| +|++|.+ .+.+++|||||+||++|+ +.++|||+|+||+|
T Consensus 157 VvGw~~~w~~--~R~fpiDmAGFA~N~~lll~~p~a~~~--------~~~~~~g~~Es~fL~~l~-~~~~lEp~~~~C~~ 225 (253)
T 1v84_A 157 VVRWKTVFDP--HRPFAIDMAGFAVNLRLILQRSQAYFK--------LRGVKGGYQESSLLRELV-TLNDLEPKAANCTK 225 (253)
T ss_dssp EEEEECSSCT--TSTTCCCGGGEEEEHHHHHHSTTCCCC--------SSSSCTTCHHHHHHHHHC-CGGGEEECHHHHTS
T ss_pred EeeeecccCC--CCCccceeeeeEEEehhhhhCCCceec--------cccCCCcchhhHHHHhhh-hHhhcEecCCCCCE
Confidence 9999999976 4999999999999999665 6776532 345789999999999998 46999999999999
Q ss_pred EEEEeccCCCCCC-CCCCCCcCCCCccc
Q 016052 365 ILNWHLHLDAHNL-PYPRGWLLPRNLEV 391 (396)
Q Consensus 365 VLVWHtrte~~~~-~~p~~w~~~~~ld~ 391 (396)
|||||||||+|.+ ..|++|.+++++||
T Consensus 226 VlvWHtrte~p~~~~e~~~~~~~~~~e~ 253 (253)
T 1v84_A 226 ILVWHTRTEKPVLVNEGKKGFTDPSVEI 253 (253)
T ss_dssp CCEECCCBCCCCCGGGTTTCSSCTTSCC
T ss_pred EEEEecccCCcccccccccccCCCCccC
Confidence 9999999999975 67899999999986
No 2
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-92 Score=674.50 Aligned_cols=230 Identities=31% Similarity=0.583 Sum_probs=205.8
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCC-CHHHHHHHHhcCCceeEeeecCC--CCCC-CCcch
Q 016052 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAA-SYETAELLRKTGVMYRQLVSQKN--SSSV-KDRGV 217 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~--~~~~-~~rg~ 217 (396)
.|+||||||||+|++|+|||||||||||||| +||||||||++. +++|+++|++|||+|+||+++++ .+.. .+||+
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~l~WIVVEd~~~~~~~v~~lL~~sgl~y~HL~~~~~~~~~~~~~prg~ 80 (246)
T 2d0j_A 2 LPTIYAITPTYSRPVQKAELTRLANTFRQVA-QLHWILVEDAAARSELVSRFLARAGLPSTHLHVPTPRRYKRPGLPRAT 80 (246)
T ss_dssp CCCEEEEEEECCSTTHHHHHHHHHHHHTTST-TEEEEEEESSSSCCHHHHHHHHHSCSCEEEEECCCCCC----CCCCCH
T ss_pred CCEEEEEeCCCCccchhHHHHHHHHHHhcCC-ceEEEEEcCCCCCCHHHHHHHHHcCCceEEEecCCccccCCCCCcchH
Confidence 4789999999999999999999999999998 799999999875 57799999999999999999873 3332 38999
Q ss_pred hHHHHHHHHHHhhCC-----CeEEEEecCCCcchhhhhHhhhcccccceeEeeEeeccCcceeEecceeeCCeeeEEEcC
Q 016052 218 HQRNLALEHIERHRL-----DGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTN 292 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l-----~GVVyFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~~~~vEGPvc~~~kVvGW~t~ 292 (396)
+|||+||+|||+|++ +||||||||||+||++||||||+||+||+||||++|+ ..+|||+|++|||+|||+.
T Consensus 81 ~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR~i~~vgvWPVglvg~----~~~EgPv~~~gkVvGw~t~ 156 (246)
T 2d0j_A 81 EQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGG----RRYERPLVENGKVVGWYTG 156 (246)
T ss_dssp HHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHTTCSSEEECCEEEETT----EEEEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHhhhceeeEEEEEeecC----cceecceeeCCEecceecc
Confidence 999999999999986 6999999999999999999999999999999999996 6799999999999999999
Q ss_pred CCCCCCcccccccceeeeeecc-ccCCcCCCCCCCccccccccccCCcchhhHHHhhccCCCceeccCCCCCEEEEEecc
Q 016052 293 EKSKRLRRFHVDMSGFAFNSTI-LWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLH 371 (396)
Q Consensus 293 ~~~~~~R~fpiDMAGFA~Ns~l-Lwdp~r~~rP~s~~~~~~d~vk~G~qEs~fl~~Lv~d~~~lEpla~~C~kVLVWHtr 371 (396)
|.++ |+||||||||||||++ ||+|++|-++ +.+++|||||+||++|+ +.++|||+|+||+||||||||
T Consensus 157 w~~~--R~fpiDmAGFA~N~~lll~~p~a~~~~--------~~~~~g~~Es~fL~~l~-~~~~lEp~~~~c~~VlvWhtr 225 (246)
T 2d0j_A 157 WRAD--RPFAIDMAGFAVSLQVILSNPKAVFKR--------RGSQPGMQESDFLKQIT-TVEELEPKANNCTKVLVWHTR 225 (246)
T ss_dssp SCTT--STTCCCGGGEEEEHHHHHHCTTCCCCT--------TSSSGGGHHHHHHHTTC-CGGGCEECHHHHTCCCEECCC
T ss_pred cCCC--CcCcccceeeEeehhhhhcCccccccc--------CCCCCCchhhHHHHHhc-cHhhceeccCCCCEEEEEecc
Confidence 9764 9999999999999995 5688875321 24678999999999997 568999999999999999999
Q ss_pred CCCCCCCCCCCCcCCC
Q 016052 372 LDAHNLPYPRGWLLPR 387 (396)
Q Consensus 372 te~~~~~~p~~w~~~~ 387 (396)
||+++++++.+-..+.
T Consensus 226 te~~~l~~e~~~~~~~ 241 (246)
T 2d0j_A 226 TEKVNLANEPKYHLDT 241 (246)
T ss_dssp BCCCCCTTCCSSSCCS
T ss_pred ccCcccccccccCCCC
Confidence 9999999876655544
No 3
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=100.00 E-value=1.6e-91 Score=676.40 Aligned_cols=224 Identities=34% Similarity=0.615 Sum_probs=201.3
Q ss_pred CCCceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC-CCHHHHHHHHhcCCceeEeeecCCCC--------
Q 016052 140 EPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA-ASYETAELLRKTGVMYRQLVSQKNSS-------- 210 (396)
Q Consensus 140 ~~~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~-~s~~va~lL~~sGl~y~HL~~~~~~~-------- 210 (396)
.+.|+||||||||.|++|+|||||||||||||| +||||||||+. .+++|++||++|||+|+||+++++..
T Consensus 18 ~~~p~IivVTPTy~R~~Q~a~LtRLa~TL~~Vp-~L~WIVVEd~~~~t~~va~lL~rsGl~y~HL~~~~p~~~~~~~~dp 96 (281)
T 3cu0_A 18 GSHMTIYVVTPTYARLVQKAELVRLSQTLSLVP-RLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEP 96 (281)
T ss_dssp ---CEEEEEEEECCSTTHHHHHHHHHHHHTTSS-SEEEEEEESSSSCCHHHHHHHHHHCSEEEEEECCCC----------
T ss_pred CCCCeEEEEeCCCCCcchhHHHHHHHHHHhcCC-ceEEEEEcCCCCCCHHHHHHHHHcCCceEEeccCCCcccccccccc
Confidence 367899999999999999999999999999998 99999999975 59999999999999999999987432
Q ss_pred -CCCCcchhHHHHHHHHHH--------hh-C----CCeEEEEecCCCcchhhhhHhhhcccccceeEeeEeeccCcceeE
Q 016052 211 -SVKDRGVHQRNLALEHIE--------RH-R----LDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAII 276 (396)
Q Consensus 211 -~~~~rg~~QRN~AL~~Ir--------~~-~----l~GVVyFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~~~~v 276 (396)
+.++||++|||+||+||| +| + ++||||||||||+||++||||||+||+|||||||++|+ +.|
T Consensus 97 ~w~~~rg~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdemR~ik~vgvWPVGlvgg----~~v 172 (281)
T 3cu0_A 97 GWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGG----LRF 172 (281)
T ss_dssp -CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHHTSCSSEEECCEEEETT----EEE
T ss_pred ccccchhHHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHhhhcceEeEEEeecccc----cee
Confidence 246899999999999999 66 3 78999999999999999999999999999999999985 889
Q ss_pred ecceeeCCeeeEEEcCCCCCCCcccccccceeeeeeccccC-CcCCCCCCCccccccccccCCcchhhHHHhhccCCCce
Q 016052 277 EGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD-PKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQM 355 (396)
Q Consensus 277 EGPvc~~~kVvGW~t~~~~~~~R~fpiDMAGFA~Ns~lLwd-p~r~~rP~s~~~~~~d~vk~G~qEs~fl~~Lv~d~~~l 355 (396)
|||+|++|||+|||+.|.+ .|+|||||||||||+++||+ |+++ .| .++++|||||+||++|++ +++|
T Consensus 173 EgPvc~~gkVvGw~t~w~~--~R~fpiDMAGFA~N~~lL~~~p~a~-f~--------~~~~~G~qEs~fL~~lv~-~~~l 240 (281)
T 3cu0_A 173 EGPQVQDGRVVGFHTAWEP--SRPFPVDMAGFAVALPLLLDKPNAQ-FD--------STAPRGHLESSLLSHLVD-PKDL 240 (281)
T ss_dssp EEEEEETTEEEEEECCSST--TCSSCCCGGGEEEEHHHHHHCTTCC-CC--------TTSCTTCHHHHHHTTTCC-GGGC
T ss_pred EEEEEeCCEEeeeeccCCC--CCCCccccceeEeehhhhhcCCccc-cc--------CCCCCcchhhHHHHHhcc-Hhhc
Confidence 9999999999999999986 49999999999999999994 5542 12 247899999999999964 7999
Q ss_pred eccCCCCCEEEEEeccCCCCCCCCC
Q 016052 356 EGTPPSCSRILNWHLHLDAHNLPYP 380 (396)
Q Consensus 356 Epla~~C~kVLVWHtrte~~~~~~p 380 (396)
||+|+||++|||||||||+|+++++
T Consensus 241 Ep~~~~c~~VlVWHtrte~p~l~~e 265 (281)
T 3cu0_A 241 EPRAANCTRVLVWHTRTEKPKMKQE 265 (281)
T ss_dssp EECHHHHTCCCEECCCBCCCCCHHH
T ss_pred EecCCCCCEEEEEecccCCCccCcH
Confidence 9999999999999999999998654
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=96.33 E-value=0.015 Score=51.72 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=64.1
Q ss_pred ceEEEEcccCCchhhhHHHHHHhhhhc-CCCCCeeEEEEecCCCCHHHHHHHHhc--CCceeEeeecCCC--CCCCCcc-
Q 016052 143 KQLIVITPTYNRAMQAYFLNRLAQVLR-LVQPPLLWIVVEENAASYETAELLRKT--GVMYRQLVSQKNS--SSVKDRG- 216 (396)
Q Consensus 143 ~~IivVTPTy~R~~Q~a~LtRLa~TL~-lVp~~L~WIVVEd~~~s~~va~lL~~s--Gl~y~HL~~~~~~--~~~~~rg- 216 (396)
+.|-||+|||.+.. +|.+.-.+|. +--+++-.|||+|++ +..+.+++++- .-..+.+..+... ...+..|
T Consensus 1 p~vSViIp~yn~~~---~l~~~l~Sl~~q~~~~~eiivvDd~S-~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~ 76 (255)
T 1qg8_A 1 PKVSVIMTSYNKSD---YVAKSISSILSQTFSDFELFIMDDNS-NEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRY 76 (255)
T ss_dssp CCEEEEEEESSCTT---THHHHHHHHHTCSCCCEEEEEEECSC-CHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHH
T ss_pred CeEEEEEEcCCCHH---HHHHHHHHHHhccCCceEEEEEECCC-CchHHHHHHHHhhcCCEEEEecccccccccccccCH
Confidence 35789999999853 3444444443 222478999999975 45667777664 2223333222000 0002334
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 217 VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 217 ~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
...||.|++.. ..-+|.|.|+|..++.+.++++
T Consensus 77 ~~a~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~ 109 (255)
T 1qg8_A 77 AALINQAIEMA----EGEYITYATDDNIYMPDRLLKM 109 (255)
T ss_dssp HHHHHHHHHHC----CCSEEEEEETTEEECTTHHHHH
T ss_pred HHHHHHHHHHc----CCCEEEEeCCCCccChHHHHHH
Confidence 46899999874 3348999999999998888764
No 5
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=96.10 E-value=0.033 Score=48.89 Aligned_cols=96 Identities=19% Similarity=0.318 Sum_probs=61.7
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhc-CCCCCeeEEEEecCCCCHHHHHHHHh-----cCCceeEeeecCCCCCCCCc
Q 016052 142 RKQLIVITPTYNRAMQAYFLNRLAQVLR-LVQPPLLWIVVEENAASYETAELLRK-----TGVMYRQLVSQKNSSSVKDR 215 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~-lVp~~L~WIVVEd~~~s~~va~lL~~-----sGl~y~HL~~~~~~~~~~~r 215 (396)
.+.|-||.|||.+.. +|.+.-.+|. +-.+++-.|||+|++.. .+.+++++ .++.+.| .+ ..
T Consensus 4 ~p~vsViIp~yn~~~---~l~~~l~Sl~~q~~~~~eiIvvDd~S~d-~t~~~~~~~~~~~~~i~~i~---~~------n~ 70 (240)
T 3bcv_A 4 IPKVSVIVPIYNVEK---YLDQCVQALLAQTLSDIEIILIDDESPD-NCPKICDDYAAQYPNIKVIH---KK------NA 70 (240)
T ss_dssp CCSEEEEEEESSCTT---THHHHHHHHHTCSSSSEEEEEEECCCSS-SHHHHHHHHHHHCSSEEEEE---CC------CC
T ss_pred CCcEEEEEecCCCHH---HHHHHHHHHHhCcCCCeEEEEEECCCCc-CHHHHHHHHHhhCCCEEEEE---CC------CC
Confidence 467999999999863 3444433332 22247899999997642 23333333 2333322 22 23
Q ss_pred c-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016052 216 G-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 216 g-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
| ...||.||++. ..-+|.|.|+|..++.+.+++|-
T Consensus 71 G~~~a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~ 106 (240)
T 3bcv_A 71 GLGMACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMY 106 (240)
T ss_dssp CHHHHHHHHHHHC----CSSEEEECCTTCCCCTTHHHHHH
T ss_pred ChHHHHHHHHHHc----CCCEEEEECCCCcCCHHHHHHHH
Confidence 4 46899999874 23589999999999988888753
No 6
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=95.14 E-value=0.037 Score=55.07 Aligned_cols=106 Identities=15% Similarity=0.061 Sum_probs=69.5
Q ss_pred CceEEEEcccCCchhhhHH-HHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcc-hhH
Q 016052 142 RKQLIVITPTYNRAMQAYF-LNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRG-VHQ 219 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~-LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg-~~Q 219 (396)
.+.|-||.|||........ |..+...|...+.+.-.|||+|++. ..|.+++++.+..+.+-...- .......| -..
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgSt-D~T~~i~~~~~~~v~~~~~~~-i~~~~n~G~g~A 170 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSE-DGTAGVAASHGAEVYSENELM-SGYGDAHGKGDA 170 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCS-SSHHHHHHHTTCEEEEGGGTT-GGGCSCCSHHHH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCC-ccHHHHHHHhCchhcccceeE-ecCCccCCHHHH
Confidence 4678999999998654433 4555554555555789999999763 456778888776543321100 00112344 367
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCc-chhhhhHhh
Q 016052 220 RNLALEHIERHRLDGIVYFADDDNI-YTMDLFDSL 253 (396)
Q Consensus 220 RN~AL~~Ir~~~l~GVVyFADDDNt-Ydl~LFdem 253 (396)
+|.|+++. ..-+|.|.|.|.. ++.+.+.+|
T Consensus 171 ~n~G~~~A----~gd~i~~lDaD~~~~~p~~L~~l 201 (387)
T 3f1y_A 171 MWRALSVT----RGDLVLYIDADTRDFRPQLAYGV 201 (387)
T ss_dssp HHHHTTTC----CSSEEEECCTTCSSCCTHHHHTT
T ss_pred HHHHHHhc----CCCEEEEEcCCCCcCCHHHHHHH
Confidence 89998764 2348999999999 888877764
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=94.53 E-value=0.091 Score=55.78 Aligned_cols=103 Identities=16% Similarity=0.036 Sum_probs=69.6
Q ss_pred CCceEEEEcccCCchhhhHHHHHHhhhhcCCC----CCeeEEEEecCCC----CHHHHHHHHhcCCceeEeeecCCCCCC
Q 016052 141 PRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQ----PPLLWIVVEENAA----SYETAELLRKTGVMYRQLVSQKNSSSV 212 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp----~~L~WIVVEd~~~----s~~va~lL~~sGl~y~HL~~~~~~~~~ 212 (396)
.++.|-||.|||.|.. +|.+.-.+|..-. .+.--|||+|+++ +..+.+++++.+-..+.+..+ |
T Consensus 178 ~~pkVSVVIptYN~~~---~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N---- 249 (657)
T 4fix_A 178 GTANIAVGIPTFNRPA---DCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-N---- 249 (657)
T ss_dssp SCCCEEEECCBSSCHH---HHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-C----
T ss_pred CCCeEEEEEEecCCHH---HHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-C----
Confidence 3467999999999865 4444444443321 2346799999764 345777777654444444322 2
Q ss_pred CCcc-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 213 KDRG-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 213 ~~rg-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
.| ...||.||++.......-+|.|.|||...+.+.+++|
T Consensus 250 --~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~l 289 (657)
T 4fix_A 250 --LGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRV 289 (657)
T ss_dssp --CHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHH
T ss_pred --CCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHH
Confidence 34 4689999999877543458999999999998888775
No 8
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=93.87 E-value=0.19 Score=47.71 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=66.0
Q ss_pred CCCceEEEEcccCCchhhhHHHHHHhhhhcCC--CCCeeEEEEecCCCCHHHHHHHHhcCCceeE-eeecCCCCCCCCcc
Q 016052 140 EPRKQLIVITPTYNRAMQAYFLNRLAQVLRLV--QPPLLWIVVEENAASYETAELLRKTGVMYRQ-LVSQKNSSSVKDRG 216 (396)
Q Consensus 140 ~~~~~IivVTPTy~R~~Q~a~LtRLa~TL~lV--p~~L~WIVVEd~~~s~~va~lL~~sGl~y~H-L~~~~~~~~~~~rg 216 (396)
...+.|-||.|||.+... |.+.-..|..- +.+.-.|||+|+++ ..|.+++++.+..+.. +.+-. ......|
T Consensus 45 ~~~~~vSViIp~yN~~~~---l~~~l~sl~~q~~~~~~eiivVDdgS~-D~t~~~~~~~~~~~~~~~~~~~--~~~~n~G 118 (329)
T 3ckj_A 45 KAGRTISVVLPALDEEDT---IGSVIDSISPLVDGLVDELIVLDSGST-DDTEIRAVAAGARVVSREQALP--EVPIRPG 118 (329)
T ss_dssp TTTCCEEEEEEESSCTTT---HHHHHHHHGGGBTTTBSEEEEEECSCC-SSHHHHHHHTTCEEEEHHHHCT--TSCCCCS
T ss_pred ccCCcEEEEEeeCCCHHH---HHHHHHHHHHhhCCCCcEEEEEeCCCC-chHHHHHHHhhhhhccceeeec--cCCCCCC
Confidence 345679999999997533 33333333322 32477899999753 4577888887765432 11100 0112345
Q ss_pred -hhHHHHHHHHHHhhCCCeEEEEecCCCc-chhhhhHhh
Q 016052 217 -VHQRNLALEHIERHRLDGIVYFADDDNI-YTMDLFDSL 253 (396)
Q Consensus 217 -~~QRN~AL~~Ir~~~l~GVVyFADDDNt-Ydl~LFdem 253 (396)
...+|.|++.. ..-+|.|.|+|.. ++.+.+++|
T Consensus 119 ~~~a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l 153 (329)
T 3ckj_A 119 KGEALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWL 153 (329)
T ss_dssp HHHHHHHHHHHC----CCSEEEECCTTEESCCTTHHHHH
T ss_pred HHHHHHHHHHhC----CCCEEEEECCCCCCcChHHHHHH
Confidence 46899999764 2349999999999 888877764
No 9
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=92.97 E-value=0.25 Score=48.88 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=63.4
Q ss_pred CCceEEEEcccCCchhhhHHHHHHhhhhcC-CCCC--eeEEEEecCCCCHHHHHHHH----hcCCceeEeeecCCCCCCC
Q 016052 141 PRKQLIVITPTYNRAMQAYFLNRLAQVLRL-VQPP--LLWIVVEENAASYETAELLR----KTGVMYRQLVSQKNSSSVK 213 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a~LtRLa~TL~l-Vp~~--L~WIVVEd~~~s~~va~lL~----~sGl~y~HL~~~~~~~~~~ 213 (396)
..+.|-||.|||.+.. ..|.+.-++|.. -+++ .--|||+|++...++.++|+ +.+...+.+..++|
T Consensus 27 ~~p~vSVIIp~yN~~~--~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n----- 99 (472)
T 1xhb_A 27 NLPTTSVVIVFHNEAW--STLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQR----- 99 (472)
T ss_dssp CCCCEEEEEEESSCCH--HHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSC-----
T ss_pred CCCCeEEEEEeCCCCH--HHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCC-----
Confidence 3467999999999862 234444444433 3334 47889999765444444443 33323444433332
Q ss_pred Ccc-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 214 DRG-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 214 ~rg-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
.| ...||.|++.. ..-+|.|.|+|..++.+.+++|
T Consensus 100 -~G~~~a~N~g~~~A----~gd~i~flD~D~~~~p~~L~~l 135 (472)
T 1xhb_A 100 -SGLIRARLKGAAVS----RGQVITFLDAHCECTAGWLEPL 135 (472)
T ss_dssp -CCHHHHHHHHHHHC----CSSEEEEEESSEEECTTCHHHH
T ss_pred -CChHHHHHHHHHhc----cCCeEEEECCCeEeCccHHHHH
Confidence 34 46899999874 2459999999999887776653
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=92.63 E-value=0.53 Score=48.16 Aligned_cols=100 Identities=21% Similarity=0.140 Sum_probs=65.3
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcCC--CCCeeEEEEecCCCCHHHHHHHHhcC--CceeEeeecCCCCCCCCcc-
Q 016052 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRLV--QPPLLWIVVEENAASYETAELLRKTG--VMYRQLVSQKNSSSVKDRG- 216 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~lV--p~~L~WIVVEd~~~s~~va~lL~~sG--l~y~HL~~~~~~~~~~~rg- 216 (396)
.+.|-||.|||.+. ..|.+.-.+|..- +.++--|||+|++. ..+.+++++.. ...+++..+. ...|
T Consensus 92 ~p~vsviIp~~n~~---~~l~~~l~sl~~q~~~~~~eiivvDd~s~-d~t~~~~~~~~~~~~i~~i~~~~-----~~~g~ 162 (625)
T 2z86_A 92 IDGLSIVIPTYNRA---KILAITLACLCNQKTIYDYEVIVADDGSK-ENIEEIVREFESLLNIKYVRQKD-----YGYQL 162 (625)
T ss_dssp CCCEEEEEEESSCH---HHHHHHHHHHHTCCCSSCEEEEEEEESCS-SCHHHHHHTTTTTSCEEEEEECC-----CSCCH
T ss_pred CCcEEEEEecCCcH---HHHHHHHHHHHhhccCCCeEEEEEeCCCc-hhHHHHHHHhhhcCCeEEEEeCC-----CCcch
Confidence 36799999999985 3556666666543 23688899999763 34566666532 1233332211 1112
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016052 217 VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 217 ~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
...||.||+.. ..-+|.|.|+|..++.+.+++|-
T Consensus 163 ~~a~N~g~~~a----~g~~v~~lD~D~~~~~~~l~~~~ 196 (625)
T 2z86_A 163 CAVRNLGLRAA----KYNYVAILDCDMAPNPLWVQSYM 196 (625)
T ss_dssp HHHHHHHHHHC----CSSEEEEECTTEEECTTHHHHHH
T ss_pred hHHHHHHHHhC----CcCEEEEECCCCCCCHHHHHHHH
Confidence 47899999874 23489999999999988887743
No 11
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=92.56 E-value=0.21 Score=49.99 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=63.6
Q ss_pred CCceEEEEcccCCchhhhHHHHHHhhhh-cCCCCCe--eEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcc-
Q 016052 141 PRKQLIVITPTYNRAMQAYFLNRLAQVL-RLVQPPL--LWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRG- 216 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a~LtRLa~TL-~lVp~~L--~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg- 216 (396)
..+.|-||.|||.+... .|.+.-++| .+.++++ --|||+|++.......++++.. ..+.+...+ ..|
T Consensus 64 ~~p~vSVIIp~yN~~~~--~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~~~-~v~vi~~~~------n~G~ 134 (501)
T 2ffu_A 64 DLPATSVVITFHNEARS--ALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE-KVRVLRNDR------REGL 134 (501)
T ss_dssp SCCCEEEEEEESSCCHH--HHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGGBT-TEEEEECSS------CCHH
T ss_pred CCCCEEEEEEeCcCcHH--HHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhcCC-CEEEEECCC------CcCH
Confidence 34679999999998643 344443333 3344443 7889999876544455554422 233332222 234
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 217 VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 217 ~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
...||.|++.. ..-+|.|.|+|..++.+.+++|
T Consensus 135 ~~A~N~G~~~A----~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 135 MRSRVRGADAA----QAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp HHHHHHHHHHC----CSSEEEECCSSEEECTTCHHHH
T ss_pred HHHHHHHHHhc----CCCEEEEECCCcccCccHHHHH
Confidence 46899999874 2349999999999888877764
No 12
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=92.37 E-value=0.59 Score=47.82 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=61.9
Q ss_pred CCceEEEEcccCCchhhhHHHHHHhhhh-cCCCCCeeEEEEecCCCCHHHHHHHHhc---CCceeEeeecCCCCCCCCcc
Q 016052 141 PRKQLIVITPTYNRAMQAYFLNRLAQVL-RLVQPPLLWIVVEENAASYETAELLRKT---GVMYRQLVSQKNSSSVKDRG 216 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a~LtRLa~TL-~lVp~~L~WIVVEd~~~s~~va~lL~~s---Gl~y~HL~~~~~~~~~~~rg 216 (396)
..+.|-||+|||.+.. +|.+.-.+| .+.-+++-.|||+|+++. .|.+++++. .-..+.+. .+| .|
T Consensus 373 ~~~~vsiii~~yn~~~---~l~~~l~s~~~q~~~~~eiivvdd~S~d-~t~~~~~~~~~~~~~i~~~~-~~n------~G 441 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSK---YIVRCVESALNQTITDLEVCICDDGSTD-DTLRILQEHYANHPRVRFIS-QKN------KG 441 (625)
T ss_dssp SSCSEEEEEEESSCTT---THHHHHHHHHSSSCCSEEEEEEEESCSS-SHHHHHHHHHTTCTTEEEEE-ECC------CC
T ss_pred cCCeEEEEEeCCCCHH---HHHHHHHHHHhCcCCCeEEEEEECcCCh-hHHHHHHHHHhhCCcEEEEe-CCC------CC
Confidence 3467999999999853 344433333 233348899999997642 344444432 11222222 222 34
Q ss_pred -hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 217 -VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 217 -~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
...||.||+.. ..-+|.|.|+|..++.+.++++
T Consensus 442 ~~~a~n~g~~~a----~g~~i~~ld~D~~~~~~~l~~~ 475 (625)
T 2z86_A 442 IGSASNTAVRLC----RGFYIGQLDSDDFLEPDAVELC 475 (625)
T ss_dssp HHHHHHHHHHHC----CSSEEEECCTTCEECTTHHHHH
T ss_pred HHHHHHHHHHhc----CCCEEEEECCCcccChhHHHHH
Confidence 46899999874 2348999999999998888874
No 13
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=90.45 E-value=0.56 Score=48.29 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=60.6
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhc-CCCCCe--eEEEEecCCCCHHHHHHHHhc---CCceeEeeecCCCCCCCCc
Q 016052 142 RKQLIVITPTYNRAMQAYFLNRLAQVLR-LVQPPL--LWIVVEENAASYETAELLRKT---GVMYRQLVSQKNSSSVKDR 215 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~-lVp~~L--~WIVVEd~~~s~~va~lL~~s---Gl~y~HL~~~~~~~~~~~r 215 (396)
.+.|-||.|||.+. ...|.+.-++|. +-++++ --|||+|++....+.++|++. .-..+.+..++ ..
T Consensus 111 ~P~vSVIIp~yNe~--~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~------n~ 182 (570)
T 2d7i_A 111 LPNTSIIIPFHNEG--WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKK------RE 182 (570)
T ss_dssp CCCEEEEEEESSCC--HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSS------CC
T ss_pred CCCeEEEEEECCCC--HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCC------CC
Confidence 46799999999986 233444444433 234454 789999976533323333331 11222232222 23
Q ss_pred c-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 216 G-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 216 g-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
| ...||.|++.. ..-+|.|.|+|..++.+.+++|
T Consensus 183 G~~~A~N~G~~~A----~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 183 GLIRTRMLGASVA----TGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp CHHHHHHHHHHHC----CSSEEEECCSSEEECTTCSHHH
T ss_pred CHHHHHHHHHHhc----CCCEEEEEcCCccccccHHHHH
Confidence 4 46899999874 2359999999999887766653
No 14
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=90.00 E-value=0.058 Score=57.01 Aligned_cols=96 Identities=21% Similarity=0.385 Sum_probs=0.0
Q ss_pred ceEEEEcccCCchhhhHHHHHHhhhhc-CCCCCeeEEEEecCCCCHHHHHHHHhc------CCceeEeeecCCCCCCCCc
Q 016052 143 KQLIVITPTYNRAMQAYFLNRLAQVLR-LVQPPLLWIVVEENAASYETAELLRKT------GVMYRQLVSQKNSSSVKDR 215 (396)
Q Consensus 143 ~~IivVTPTy~R~~Q~a~LtRLa~TL~-lVp~~L~WIVVEd~~~s~~va~lL~~s------Gl~y~HL~~~~~~~~~~~r 215 (396)
+.|=||.|||.+.. +|.+.-.+|. +--+++-.|||+|++ +..|.+++++. ++.+.+. ++| .
T Consensus 2 p~vSVIIp~yN~~~---~L~~~L~Sll~Qt~~~~EIIVVDDgS-tD~t~~il~~~~~~~~~~i~~i~~--~~n------~ 69 (729)
T 3l7i_A 2 NKLTIIVTYYNAEE---YITGCLESIKQQRTQDFNLIIVNDGS-TDQSKKLMDEAIKDYDKNIRFIDL--DEN------S 69 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCCCHH---HHHHHHHHHHhCCCCCeEEEEEECCC-CCcHHHHHHHHHHhCCCCEEEEEC--CCC------C
Confidence 45789999999852 3333333322 222367789999976 33445555542 3333332 222 2
Q ss_pred c-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016052 216 G-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 216 g-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
| ...||.|++..+ .-+|.|.|+|..++.+.++++-
T Consensus 70 G~~~arN~gi~~A~----gdyI~flD~Dd~~~p~~l~~l~ 105 (729)
T 3l7i_A 70 GHAHARNIALEEVE----TPYFMFLDADDELASYAITFYL 105 (729)
T ss_dssp ----------------------------------------
T ss_pred CHHHHHHHHHHhcc----CCEEEEECCCCCCChhHHHHHH
Confidence 3 367999998763 2389999999999998888753
No 15
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=87.79 E-value=1.8 Score=42.74 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=66.8
Q ss_pred EEcccCCchhhhHHHHHHhhhhcCCCC---CeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCC---CCCCcch---
Q 016052 147 VITPTYNRAMQAYFLNRLAQVLRLVQP---PLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSS---SVKDRGV--- 217 (396)
Q Consensus 147 vVTPTy~R~~Q~a~LtRLa~TL~lVp~---~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~---~~~~rg~--- 217 (396)
||-+||.|+. |.|+-..|....| +..=||..|+. ..+|.++++.-+...+|+-.+.... ..+.+|.
T Consensus 6 ViI~~yNRp~----l~~~L~sL~~~~p~~~~~~iivsdDgs-~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y 80 (343)
T 1fo8_A 6 ILVIACDRST----VRRCLDKLLHYRPSAELFPIIVSQDCG-HEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGY 80 (343)
T ss_dssp EEEEESSCTT----HHHHHHHHHHHCSCTTTSCEEEEECTT-CHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHH
T ss_pred EEEEECCcHH----HHHHHHHHHhcCCCcCCcEEEEEECCC-CHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccc
Confidence 5667899983 5566556555431 34667778875 6789999998776667763332111 1222332
Q ss_pred ----hHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016052 218 ----HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 218 ----~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
.....||.++=+....+-|.|-|||..-+.++|+-+.+
T Consensus 81 ~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 81 YKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 34556777764444578899999999999888865543
No 16
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=84.76 E-value=2.9 Score=45.09 Aligned_cols=99 Identities=19% Similarity=0.333 Sum_probs=62.4
Q ss_pred CceEEEEcccCCchhhhHHHHHHhhhhcCCC-CC--eeEEEEecCCC--C-----H-----------HHHHHHHhcCCce
Q 016052 142 RKQLIVITPTYNRAMQAYFLNRLAQVLRLVQ-PP--LLWIVVEENAA--S-----Y-----------ETAELLRKTGVMY 200 (396)
Q Consensus 142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp-~~--L~WIVVEd~~~--s-----~-----------~va~lL~~sGl~y 200 (396)
.|.|-||.|||...... |.+.-.+|.... |+ +.-|||+|+++ | + .+.++.++.++.|
T Consensus 139 ~P~VSViIPtyNe~~~l--L~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~ 216 (802)
T 4hg6_A 139 LPTVDILVPSYNEPADM--LSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVY 216 (802)
T ss_dssp CCCEEEEEECTTCCHHH--HHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred CCcEEEEEEECCCCHHH--HHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEE
Confidence 36799999999875422 133333332221 23 88999999753 2 1 2334455667766
Q ss_pred eEeeecCCCCCCCCcc-hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 201 RQLVSQKNSSSVKDRG-VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 201 ~HL~~~~~~~~~~~rg-~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
.+. +++ .+| ...+|.|++.. ..-+|.|.|+|...+.+.+++|
T Consensus 217 i~~--~~~-----~~GKa~alN~gl~~a----~gd~Il~lDaD~~~~pd~L~~l 259 (802)
T 4hg6_A 217 STR--ERN-----EHAKAGNMSAALERL----KGELVVVFDADHVPSRDFLART 259 (802)
T ss_dssp EEC--SSC-----CSHHHHHHHHHHHHC----CCSEEEECCTTEEECTTHHHHH
T ss_pred EEe--cCC-----CCcchHHHHHHHHhc----CCCEEEEECCCCCcChHHHHHH
Confidence 543 221 123 35799999874 3358999999999998887764
No 17
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=83.00 E-value=7.8 Score=38.72 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=57.6
Q ss_pred EEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCC--CHHHHHHHH-----hcCCceeEeeecCCCCCCCCcch-
Q 016052 146 IVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAA--SYETAELLR-----KTGVMYRQLVSQKNSSSVKDRGV- 217 (396)
Q Consensus 146 ivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~--s~~va~lL~-----~sGl~y~HL~~~~~~~~~~~rg~- 217 (396)
+||-|+|.... ..-+.++...+. . ++.--|||+|+++ |.++++-|+ ..|+....+..... ....+|.
T Consensus 3 lVIiP~~eE~I-~~vl~~l~~~~~-~-~~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~--~~~n~GkG 77 (397)
T 2bo4_A 3 LVVFPFKHEHP-EVLLHNVRVAAA-H-PRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERL--GTLRPGKG 77 (397)
T ss_dssp EEEEECCSSCH-HHHHHHHHHHHH-S-TTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCC--SSSSSSHH
T ss_pred EEEEeCCccCH-HHHHHHHHHhcc-C-CCeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccC--CCCCCCHH
Confidence 56667876321 112223322222 2 2566799999763 444444221 55777655533210 0012454
Q ss_pred hHHHHHHHHHHhhCCCeEEEEecCCCc-chhhhhHhh
Q 016052 218 HQRNLALEHIERHRLDGIVYFADDDNI-YTMDLFDSL 253 (396)
Q Consensus 218 ~QRN~AL~~Ir~~~l~GVVyFADDDNt-Ydl~LFdem 253 (396)
.+-+.|++|..++...-+|.|.|.|.. |+.+...+|
T Consensus 78 ~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~L 114 (397)
T 2bo4_A 78 DGMNTALRYFLEETQWERIHFYDADITSFGPDWITKA 114 (397)
T ss_dssp HHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHH
Confidence 578889988752233338899999996 899887775
No 18
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=77.51 E-value=2.7 Score=42.59 Aligned_cols=98 Identities=23% Similarity=0.269 Sum_probs=62.5
Q ss_pred eEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHH
Q 016052 144 QLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAA--SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRN 221 (396)
Q Consensus 144 ~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~--s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN 221 (396)
.+-||.|.|.=-.+ | |-..|...|.+.-+|||.|++. +..-+++|++-.- .++.+-.-+||.|
T Consensus 54 klSIVVPvYNEe~~---l--LesVl~qi~~d~eIIlVdDGS~D~s~~e~dil~~~~~----------~~~~ri~viHQkn 118 (391)
T 2wvl_A 54 QTAIVVPTRNERLK---L--LEGVLSGIPHEALILVASNSSPDRFQMERDLLEEFAH----------LTERPALIFHQKD 118 (391)
T ss_dssp TEEEEEEESSCCHH---H--HHHHHHTSCTTSEEEEEECCCHHHHHHHHHHHHHHHH----------HTTCCEEEEETTC
T ss_pred ceEEEEeccCcHHH---H--HHHHHhcCCCCceEEEEECCCCCChHhHHHHHHHHHh----------hcccceEEEeccC
Confidence 36788899974432 2 6777888888999999999873 2222556554320 0001112246666
Q ss_pred HHHHHHHhhC------------------------------CCeEEEEecCCCcchhhhhHhhhcc
Q 016052 222 LALEHIERHR------------------------------LDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 222 ~AL~~Ir~~~------------------------------l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
.+|...+++. ..=.|-|.|-||..+-...+.++..
T Consensus 119 ~gls~Ar~~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~v~Eyvk~y 183 (391)
T 2wvl_A 119 PALAEALRAGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEYVRAY 183 (391)
T ss_dssp HHHHHHHHHTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHHHHHHHHHH
T ss_pred hHHHHHHHhcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccCHHHHHHHH
Confidence 6666666421 1237999999999988888877544
No 19
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=68.84 E-value=20 Score=33.90 Aligned_cols=82 Identities=20% Similarity=0.140 Sum_probs=50.8
Q ss_pred CCceEEEEcccCCchhhhH-HHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCCceeEeeecCCCCCCCCcchhH
Q 016052 141 PRKQLIVITPTYNRAMQAY-FLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQ 219 (396)
Q Consensus 141 ~~~~IivVTPTy~R~~Q~a-~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~Q 219 (396)
+.+.|-||.|||.|..... -|..|...|.+-.+++-=|||+|++.. + + .....
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d~----------~-----------f-----~~a~a 116 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDT----------I-----------F-----NRAKL 116 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS----------C-----------C-----CHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCC----------c-----------c-----chhhh
Confidence 4568999999999976553 234444222232336777999994321 0 0 12357
Q ss_pred HHHHHHHHHhhCCCeEEEEecCCCcchhh
Q 016052 220 RNLALEHIERHRLDGIVYFADDDNIYTMD 248 (396)
Q Consensus 220 RN~AL~~Ir~~~l~GVVyFADDDNtYdl~ 248 (396)
||.|+..--+....=+|.|.|+|-...-+
T Consensus 117 ~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 117 LNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred hhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 99988433233344589999999887666
No 20
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=43.18 E-value=66 Score=23.41 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=47.8
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+||||... .....+.|++.|..... +. .-..|++.++++..+-||.=.+..+.-.+++.+++|+.
T Consensus 5 liv~~~~~~~~~l~~~l~~~g~~v~~--~~------------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~ 70 (119)
T 2j48_A 5 LLLEEEDEAATVVCEMLTAAGFKVIW--LV------------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREH 70 (119)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEE--ES------------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHHHHHhCCcEEEE--ec------------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 46777654 45688899988864322 21 12458888888887777665555555556777777765
Q ss_pred cccceeEeeEee
Q 016052 257 SRFGTWPVAMLA 268 (396)
Q Consensus 257 r~vGvWPVGlvg 268 (396)
.....-||-+++
T Consensus 71 ~~~~~~~ii~~~ 82 (119)
T 2j48_A 71 QADPHPPLVLFL 82 (119)
T ss_dssp CCCSSCCCEEEE
T ss_pred cccCCCCEEEEe
Confidence 432334555544
No 21
>3tj8_A Urease accessory protein UREE; metal binding protein; 1.59A {Helicobacter pylori} PDB: 3tj9_A 3tja_A 3l9z_A 3la0_A 3nxz_A 3ny0_A
Probab=41.68 E-value=52 Score=29.33 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=40.3
Q ss_pred eEEEEcccCCchhhhHHHHHHhhhh--cCCCCCeeEEEEecC--C----CCHHHHHHHHhcCCceeEeeec
Q 016052 144 QLIVITPTYNRAMQAYFLNRLAQVL--RLVQPPLLWIVVEEN--A----ASYETAELLRKTGVMYRQLVSQ 206 (396)
Q Consensus 144 ~IivVTPTy~R~~Q~a~LtRLa~TL--~lVp~~L~WIVVEd~--~----~s~~va~lL~~sGl~y~HL~~~ 206 (396)
.+++|||.- ..+|.|+|+-| ||+| +-||++ . ....+.++|++-|+.+++...+
T Consensus 79 ~vl~i~~~~-----~~~l~r~ayhLGNRH~p-----~~i~~~~~~l~i~~D~vl~~mL~~lG~~v~~~~~p 139 (170)
T 3tj8_A 79 EVIHIQAKS-----VAEVAKICYEIGNRHAA-----LYYGESQFEFKTPFEKPTLALLEKLGVQNRVLSSK 139 (170)
T ss_dssp EEEEEECSS-----HHHHHHHHHHHHHHTCC-----EEECSSTTEEEEECCHHHHHHHHHHTCEEEEEEEC
T ss_pred cEEEEeCCC-----HHHHHHHHHHHcCCcce-----EEECCCceEEEEcCcHHHHHHHHHCCCeeEEEEec
Confidence 456666543 45789999988 6887 677776 2 3567899999999999998775
No 22
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=38.40 E-value=1e+02 Score=23.42 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=49.3
Q ss_pred eeEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 175 LLWIVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 175 L~WIVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
..=+||||... .....++|++.|..... + ..-..|++.++++..+-|+.=.+..+.--+++.++|
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~--~------------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l 72 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEI--A------------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSL 72 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE--E------------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEE--e------------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 33467788665 46688899987764321 2 122468888888887766554444455557777788
Q ss_pred hcccccceeEeeEee
Q 016052 254 REISRFGTWPVAMLA 268 (396)
Q Consensus 254 R~ir~vGvWPVGlvg 268 (396)
|+......-|+-+++
T Consensus 73 ~~~~~~~~~~ii~~~ 87 (132)
T 3lte_A 73 RQNKVANQPKILVVS 87 (132)
T ss_dssp HTTTCSSCCEEEEEC
T ss_pred HhcCccCCCeEEEEe
Confidence 776543444554444
No 23
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=37.95 E-value=65 Score=32.09 Aligned_cols=87 Identities=24% Similarity=0.219 Sum_probs=56.9
Q ss_pred ceEEEE--cccCCchhhhHHHHHHhhhhcC---CCCCeeEEEEecCCC--CHHHHHHHHhcCCceeEeeecCCCCCC---
Q 016052 143 KQLIVI--TPTYNRAMQAYFLNRLAQVLRL---VQPPLLWIVVEENAA--SYETAELLRKTGVMYRQLVSQKNSSSV--- 212 (396)
Q Consensus 143 ~~IivV--TPTy~R~~Q~a~LtRLa~TL~l---Vp~~L~WIVVEd~~~--s~~va~lL~~sGl~y~HL~~~~~~~~~--- 212 (396)
..|++- |||+-.+.+ |.+|...++. ++ +...|-+|.... +.+..+.|++.|+...+|++..-....
T Consensus 106 ~~i~fgGGtpt~l~~~~---l~~ll~~i~~~~~~~-~~~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~ 181 (457)
T 1olt_A 106 SQLHWGGGTPTYLNKAQ---ISRLMKLLRENFQFN-ADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRL 181 (457)
T ss_dssp EEEEEEESCGGGSCHHH---HHHHHHHHHHHSCEE-EEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHH
T ss_pred EEEEEeCCCcccCCHHH---HHHHHHHHHHhCCCC-CCcEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHH
Confidence 445554 788755444 4444444443 33 456788898553 789999999999999999987622111
Q ss_pred CCc--chhHHHHHHHHHHhhCCC
Q 016052 213 KDR--GVHQRNLALEHIERHRLD 233 (396)
Q Consensus 213 ~~r--g~~QRN~AL~~Ir~~~l~ 233 (396)
-.| ...+-..|++.+++....
T Consensus 182 i~R~~~~~~~~~ai~~~r~~G~~ 204 (457)
T 1olt_A 182 VNREQDEEFIFALLNHAREIGFT 204 (457)
T ss_dssp HTCCCCHHHHHHHHHHHHHTTCC
T ss_pred hCCCCCHHHHHHHHHHHHHcCCC
Confidence 122 256777888888887554
No 24
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=37.02 E-value=9.5 Score=32.17 Aligned_cols=18 Identities=39% Similarity=0.768 Sum_probs=14.1
Q ss_pred CCeEEEEe-cCCCcchhhh
Q 016052 232 LDGIVYFA-DDDNIYTMDL 249 (396)
Q Consensus 232 l~GVVyFA-DDDNtYdl~L 249 (396)
..|+++|| ||+++|+..|
T Consensus 80 vkG~avFaS~d~sVy~a~l 98 (106)
T 3nrf_A 80 VEGDAIFASEDDAVYGASL 98 (106)
T ss_dssp EEEEEEEEESSSGGGGEEE
T ss_pred eeeEEEEeeCChhheeeeE
Confidence 57988887 6689998764
No 25
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=36.54 E-value=96 Score=23.44 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=49.9
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+||||... .....++|++.|.. +.... .-..|++.++++..+-|+.=.+..+.=-+++.+++|+.
T Consensus 7 livdd~~~~~~~l~~~L~~~g~~---v~~~~-----------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 7 LIVEDYQAAAETFKELLEMLGFQ---ADYVM-----------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp EEECSCHHHHHHHHHHHHHTTEE---EEEES-----------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred EEEcCCHHHHHHHHHHHHHcCCC---EEEEC-----------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 67888765 46788999998852 22211 22468899988887766665555555567777788775
Q ss_pred cccceeEeeEeec
Q 016052 257 SRFGTWPVAMLAQ 269 (396)
Q Consensus 257 r~vGvWPVGlvg~ 269 (396)
....--||=++++
T Consensus 73 ~~~~~~~ii~~s~ 85 (127)
T 3i42_A 73 PMEKTSKFVAVSG 85 (127)
T ss_dssp CCSSCCEEEEEEC
T ss_pred hccCCCCEEEEEC
Confidence 4334456655554
No 26
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=36.46 E-value=90 Score=24.06 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=48.8
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+||||... .....++|++.|.... .+ ..-..|++.++++..+-||.=.+..+.-.+++.++||+.
T Consensus 11 Livdd~~~~~~~l~~~L~~~g~~v~--~~------------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 11 MIVDDDAHVRIAVKTILSDAGFHII--SA------------DSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDN 76 (142)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEE--EE------------SSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHT
T ss_pred EEEcCCHHHHHHHHHHHHHCCeEEE--Ee------------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 57787665 4568889999885322 22 123468888888776655554444445556788888774
Q ss_pred cccceeEeeEeec
Q 016052 257 SRFGTWPVAMLAQ 269 (396)
Q Consensus 257 r~vGvWPVGlvg~ 269 (396)
.....-||=++++
T Consensus 77 ~~~~~~pii~~s~ 89 (142)
T 3cg4_A 77 SLEQGIAIVMLTA 89 (142)
T ss_dssp TCCTTEEEEEEEC
T ss_pred cccCCCCEEEEEC
Confidence 3344557666654
No 27
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=35.54 E-value=1.1e+02 Score=23.66 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=49.6
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+||||... .....++|++.|.... .+ ..-..|++.++++..+-||.=.+..+.-.+++.++||+.
T Consensus 12 Livd~~~~~~~~l~~~L~~~g~~v~--~~------------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 77 (147)
T 2zay_A 12 MLVDTQLPALAASISALSQEGFDII--QC------------GNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKN 77 (147)
T ss_dssp EEECTTGGGGHHHHHHHHHHTEEEE--EE------------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTS
T ss_pred EEEeCCHHHHHHHHHHHHHcCCeEE--Ee------------CCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcC
Confidence 57788665 5678899998875322 22 123458888888887777665444444557778888774
Q ss_pred cccceeEeeEeec
Q 016052 257 SRFGTWPVAMLAQ 269 (396)
Q Consensus 257 r~vGvWPVGlvg~ 269 (396)
....--||-++++
T Consensus 78 ~~~~~~pii~ls~ 90 (147)
T 2zay_A 78 PQTASIPVIALSG 90 (147)
T ss_dssp TTTTTSCEEEEES
T ss_pred cccCCCCEEEEeC
Confidence 3334456666654
No 28
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=35.04 E-value=93 Score=23.69 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=48.1
Q ss_pred EEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016052 177 WIVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 177 WIVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
=++|||... .....++|++.| |.......+.. .|++.++++..+-|+.=.+..+.--+++.++||+
T Consensus 4 ilivdd~~~~~~~l~~~L~~~g--~~v~~~~~~~~-----------~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~ 70 (134)
T 3f6c_A 4 AIIIDDHPLAIAAIRNLLIKND--IEILAELTEGG-----------SAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRK 70 (134)
T ss_dssp EEEECCCHHHHHHHHHHHHHTT--EEEEEEESSST-----------THHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhhCC--cEEEEEcCCHH-----------HHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHh
Confidence 367888765 467889999998 44442222211 2788888888776666555555556777888876
Q ss_pred ccccceeEeeEee
Q 016052 256 ISRFGTWPVAMLA 268 (396)
Q Consensus 256 ir~vGvWPVGlvg 268 (396)
.. ..-||-+++
T Consensus 71 ~~--~~~~ii~~s 81 (134)
T 3f6c_A 71 RQ--YSGIIIIVS 81 (134)
T ss_dssp TT--CCSEEEEEE
T ss_pred cC--CCCeEEEEe
Confidence 42 233554444
No 29
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=30.86 E-value=82 Score=24.28 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=44.1
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+||||... .....++|++.|.... .+. .-..|++.++++.-+-|| ..|.+ .+++.++||+.
T Consensus 22 livdd~~~~~~~l~~~L~~~g~~v~--~~~------------~~~~al~~l~~~~~dlvi-~~~~~---g~~~~~~l~~~ 83 (137)
T 2pln_A 22 LLIEKNSVLGGEIEKGLNVKGFMAD--VTE------------SLEDGEYLMDIRNYDLVM-VSDKN---ALSFVSRIKEK 83 (137)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEE--EES------------CHHHHHHHHHHSCCSEEE-ECSTT---HHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHcCcEEE--EeC------------CHHHHHHHHHcCCCCEEE-EcCcc---HHHHHHHHHhc
Confidence 57787665 4568889998876432 221 124588888888777777 33333 35777777765
Q ss_pred cccc-eeEeeEeec
Q 016052 257 SRFG-TWPVAMLAQ 269 (396)
Q Consensus 257 r~vG-vWPVGlvg~ 269 (396)
. --||-++++
T Consensus 84 ---~~~~~ii~ls~ 94 (137)
T 2pln_A 84 ---HSSIVVLVSSD 94 (137)
T ss_dssp ---STTSEEEEEES
T ss_pred ---CCCccEEEEeC
Confidence 2 345555543
No 30
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=29.39 E-value=1.1e+02 Score=23.80 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=48.9
Q ss_pred eEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016052 176 LWIVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 176 ~WIVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
.=+||||... ......+|++.|.... .+. .=..||+.++++..+-|+.=.+-.+.--+++.++||
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~--~~~------------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr 71 (136)
T 3t6k_A 6 TLLIVDDDDTVAEMLELVLRGAGYEVR--RAA------------SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVR 71 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE--EES------------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEE--EeC------------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3467888765 4568889998885322 221 124588888888777665544444444577888887
Q ss_pred cccccceeEeeEeec
Q 016052 255 EISRFGTWPVAMLAQ 269 (396)
Q Consensus 255 ~ir~vGvWPVGlvg~ 269 (396)
+.....--||=++++
T Consensus 72 ~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 72 QHPLTKTLPILMLTA 86 (136)
T ss_dssp HSGGGTTCCEEEEEC
T ss_pred cCCCcCCccEEEEec
Confidence 643333346655554
No 31
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=29.00 E-value=1.3e+02 Score=24.87 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=52.3
Q ss_pred CeeEEEEecCCCC-HHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHh
Q 016052 174 PLLWIVVEENAAS-YETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDS 252 (396)
Q Consensus 174 ~L~WIVVEd~~~s-~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFde 252 (396)
++-=+||||.... ..+.++|++.|...++.+. + =..||+.++++.-+=|+.=..--+.-=+++-.+
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~--~-----------g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ 78 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEAD--D-----------GLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKN 78 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEES--S-----------HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEEC--C-----------HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHH
Confidence 4445799998764 5688999999964333221 1 124888888887665544222223334577778
Q ss_pred hhcccccceeEeeEeec
Q 016052 253 LREISRFGTWPVAMLAQ 269 (396)
Q Consensus 253 mR~ir~vGvWPVGlvg~ 269 (396)
||+.....--||=++++
T Consensus 79 ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 79 IRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHSTTTTTCCEEEEES
T ss_pred HHhCCCCCCCeEEEEEC
Confidence 88766666678777665
No 32
>1ear_A Urease accessory protein UREE; chaperone, putative NI-chaperone, urease operon; 1.7A {Bacillus pasteurii} SCOP: b.107.1.1 d.58.38.1 PDB: 1eb0_A
Probab=27.83 E-value=86 Score=27.06 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=40.6
Q ss_pred ceEEEEcccCCchhhhHHHHHHhhhh--cCCCCCeeEEEEecCC----CCHHHHHHHHhcCCceeEeeecC
Q 016052 143 KQLIVITPTYNRAMQAYFLNRLAQVL--RLVQPPLLWIVVEENA----ASYETAELLRKTGVMYRQLVSQK 207 (396)
Q Consensus 143 ~~IivVTPTy~R~~Q~a~LtRLa~TL--~lVp~~L~WIVVEd~~----~s~~va~lL~~sGl~y~HL~~~~ 207 (396)
..+++|||.- ..+|.|+|+-| ||+| +-||++. ....++++|++.|+.|+....+-
T Consensus 76 e~vl~i~~~d-----~~~l~r~ayhlGNRH~p-----~~i~~~~l~v~~D~vl~~mL~~lg~~v~~~~~~f 136 (147)
T 1ear_A 76 EKVYVIKPQT-----MQEMGKMAFEIGNRHTM-----CIIEDDEILVRYDKTLEKLIDEVGVSYEQSERRF 136 (147)
T ss_dssp EEEEEEECSS-----HHHHHHHHHHHHHTTCC-----CEEETTEEEEECCHHHHHHHHHHTCEEEEEEECC
T ss_pred CcEEEEECCC-----HHHHHHHHHHHhCCCce-----eEEeCCEEEEcCcHHHHHHHHHCCCeeEEEEecC
Confidence 4467777743 24689999988 7888 5666654 24568999999999999987543
No 33
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.79 E-value=1.7e+02 Score=22.04 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=47.0
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHh-------hCCCeEEEEecCCCcchhhh
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIER-------HRLDGIVYFADDDNIYTMDL 249 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~-------~~l~GVVyFADDDNtYdl~L 249 (396)
+||||... .....++|++.|..+.-..+. .-..|++.+++ +.-+-|+.=.+..+.-.+++
T Consensus 6 livdd~~~~~~~l~~~L~~~~~~~~v~~~~------------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~ 73 (140)
T 1k68_A 6 FLVEDNKADIRLIQEALANSTVPHEVVTVR------------DGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREV 73 (140)
T ss_dssp EEECCCHHHHHHHHHHHHTCSSCCEEEEEC------------SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCceEEEEC------------CHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHH
Confidence 57787664 566889999988743322222 23458888887 45555544333334445677
Q ss_pred hHhhhcccccceeEeeEeec
Q 016052 250 FDSLREISRFGTWPVAMLAQ 269 (396)
Q Consensus 250 FdemR~ir~vGvWPVGlvg~ 269 (396)
.++||+.....--||=++++
T Consensus 74 ~~~l~~~~~~~~~pii~ls~ 93 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLST 93 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEES
T ss_pred HHHHHcCcccccccEEEEec
Confidence 77777654333446655554
No 34
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=27.36 E-value=1.2e+02 Score=26.99 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhh
Q 016052 217 VHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLR 254 (396)
Q Consensus 217 ~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR 254 (396)
-.+||.|++.- ..-+|.|.|.|-.++-..+++|.
T Consensus 63 a~a~N~Gi~~A----~g~yl~fln~D~~~~~~~l~~l~ 96 (249)
T 2nxv_A 63 FSWHKQMLPRC----KGRYVIFCHEDVELVDRGYDDLV 96 (249)
T ss_dssp TTHHHHHGGGC----CSSEEEEEETTEECSSCCHHHHH
T ss_pred HHHHHHHHHhc----CCCEEEEECCCcccCccHHHHHH
Confidence 36899998753 23489999999888877777653
No 35
>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} SCOP: b.107.1.1 d.58.38.1 PDB: 1gmw_A 1gmw_D 1gmv_A
Probab=26.90 E-value=1.1e+02 Score=26.38 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=39.9
Q ss_pred eEEEEcccCCchhhhHHHHHHhhhh--cCCCCCeeEEEEecCCC----CHHHHHHHHhcCCceeEeeec
Q 016052 144 QLIVITPTYNRAMQAYFLNRLAQVL--RLVQPPLLWIVVEENAA----SYETAELLRKTGVMYRQLVSQ 206 (396)
Q Consensus 144 ~IivVTPTy~R~~Q~a~LtRLa~TL--~lVp~~L~WIVVEd~~~----s~~va~lL~~sGl~y~HL~~~ 206 (396)
.+++||+.- ..+|.|+|+-| +|+| +.||++.- -..+.++|++.|+.++....+
T Consensus 73 ~vl~v~~~~-----~~~l~r~ayhLGNRH~p-----~~i~~~~l~v~~D~vl~~mL~~lG~~v~~~~~p 131 (143)
T 1gmu_A 73 EVSVVRCDD-----PFMLAKACYALGNRHVP-----LQIMPGELRYHHDHVLDDMLRQFGLTVTFGQLP 131 (143)
T ss_dssp EEEEEECSC-----HHHHHHHHHHHHHTTCC-----CEEETTEEEEECCHHHHHHHHTTTCCEEEEEEE
T ss_pred cEEEEECCC-----HHHHHHHHHHHhCCcce-----eEEeCCEEEEcCcHHHHHHHHHcCCeeEEEEec
Confidence 466777642 34699999998 7888 67777642 457899999999999997654
No 36
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=26.89 E-value=1.2e+02 Score=24.10 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=51.2
Q ss_pred eeEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 175 LLWIVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 175 L~WIVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
..=+||||... .....++|++.|... ..+ ..-..|++.++++..+-||.=.+..+.--+++.++|
T Consensus 8 ~~ILivdd~~~~~~~l~~~L~~~g~~v--~~~------------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l 73 (154)
T 3gt7_A 8 GEILIVEDSPTQAEHLKHILEETGYQT--EHV------------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWL 73 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEE--EEE------------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHCCCEE--EEe------------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 33467888765 466889999888532 112 122468888888877766665555555567888888
Q ss_pred hcccccceeEeeEeec
Q 016052 254 REISRFGTWPVAMLAQ 269 (396)
Q Consensus 254 R~ir~vGvWPVGlvg~ 269 (396)
|+.....--||=++++
T Consensus 74 r~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 74 KGQPDLRTIPVILLTI 89 (154)
T ss_dssp HHSTTTTTSCEEEEEC
T ss_pred HhCCCcCCCCEEEEEC
Confidence 8754333445555543
No 37
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=26.63 E-value=2.1e+02 Score=21.71 Aligned_cols=79 Identities=6% Similarity=0.028 Sum_probs=48.5
Q ss_pred EEEecCCC-CHHHHHHHHh-cCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhc
Q 016052 178 IVVEENAA-SYETAELLRK-TGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLRE 255 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~-sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ 255 (396)
+||||... .....++|++ .|...... + ..-..|++.++++..+-||.=.+..+.--+++.++||+
T Consensus 12 Livdd~~~~~~~l~~~L~~~~~~~~v~~-~------------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 78 (143)
T 3cnb_A 12 LIIEDDKEFADMLTQFLENLFPYAKIKI-A------------YNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKS 78 (143)
T ss_dssp EEECSCHHHHHHHHHHHHHHCTTCEEEE-E------------CSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHHHhccCccEEEE-E------------CCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHh
Confidence 57788665 4568889998 78652222 1 12345888888887776655444444445677777777
Q ss_pred ccccceeEeeEeec
Q 016052 256 ISRFGTWPVAMLAQ 269 (396)
Q Consensus 256 ir~vGvWPVGlvg~ 269 (396)
.....--||=++++
T Consensus 79 ~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 79 TPATANIIVIAMTG 92 (143)
T ss_dssp STTTTTSEEEEEES
T ss_pred CccccCCcEEEEeC
Confidence 43333446655554
No 38
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=25.91 E-value=1.4e+02 Score=22.77 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=46.8
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+||||... ......+|++.|... ..+. .-..||+.++++..+-|+.=.+..+.--+++.++||+.
T Consensus 6 Livdd~~~~~~~l~~~l~~~g~~v--~~~~------------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~ 71 (122)
T 3gl9_A 6 LLVDDSAVLRKIVSFNLKKEGYEV--IEAE------------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEK 71 (122)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEE--EEES------------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred EEEeCCHHHHHHHHHHHHHCCcEE--EEeC------------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhc
Confidence 67888764 456888999888432 2231 12458888988777755442222333446777777765
Q ss_pred cccceeEeeEeec
Q 016052 257 SRFGTWPVAMLAQ 269 (396)
Q Consensus 257 r~vGvWPVGlvg~ 269 (396)
....--||=++++
T Consensus 72 ~~~~~~pii~~s~ 84 (122)
T 3gl9_A 72 EEWKRIPVIVLTA 84 (122)
T ss_dssp TTTTTSCEEEEES
T ss_pred ccccCCCEEEEec
Confidence 4434446666654
No 39
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=25.27 E-value=1.3e+02 Score=23.25 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=49.8
Q ss_pred eeEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 175 LLWIVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 175 L~WIVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
..=+||||... .....++|++.|..+.-..+. .-..|++.++++..+-||.=.+..+.--+++.++|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~------------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l 73 (144)
T 3kht_A 6 KRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVD------------NGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAV 73 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCCEEEEEES------------SHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEEC------------CHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 44478888765 467889999988764322221 12458888888777755443333344456777777
Q ss_pred hcccccceeEeeEeec
Q 016052 254 REISRFGTWPVAMLAQ 269 (396)
Q Consensus 254 R~ir~vGvWPVGlvg~ 269 (396)
|+.....--||=++++
T Consensus 74 r~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 74 RKPGANQHTPIVILTD 89 (144)
T ss_dssp HSSSTTTTCCEEEEET
T ss_pred HhcccccCCCEEEEeC
Confidence 7643333445555554
No 40
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.88 E-value=2.1e+02 Score=21.87 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=46.1
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHh----------hCCCeEEEEecCCCcch
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIER----------HRLDGIVYFADDDNIYT 246 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~----------~~l~GVVyFADDDNtYd 246 (396)
+||||... .....++|++.|..+.-..+ ..-..|++.+++ +.-+-||.=.+..+.--
T Consensus 10 Livdd~~~~~~~l~~~L~~~g~~~~v~~~------------~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 10 LVVEDSDEDFSTFQRLLQREGVVNPIYRC------------ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDG 77 (149)
T ss_dssp EEECCCHHHHHHHHHHHHHTTBCSCEEEE------------CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCH
T ss_pred EEEECCHHHHHHHHHHHHHcCCCceEEEE------------CCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCH
Confidence 57787664 45688899998863221222 123458888887 44444444333334445
Q ss_pred hhhhHhhhcccccceeEeeEeec
Q 016052 247 MDLFDSLREISRFGTWPVAMLAQ 269 (396)
Q Consensus 247 l~LFdemR~ir~vGvWPVGlvg~ 269 (396)
+++.++||+.....--||-++++
T Consensus 78 ~~~~~~l~~~~~~~~~~ii~~t~ 100 (149)
T 1k66_A 78 REVLQEIKQDEVLKKIPVVIMTT 100 (149)
T ss_dssp HHHHHHHTTSTTGGGSCEEEEES
T ss_pred HHHHHHHHhCcccCCCeEEEEeC
Confidence 67777787754334456655554
No 41
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.67 E-value=1.3e+02 Score=22.24 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=46.1
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCC-CcchhhhhHhhhc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDD-NIYTMDLFDSLRE 255 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDD-NtYdl~LFdemR~ 255 (396)
+||||... .....++|++.|.... .+. .-..|++.++++..+-|+.=.+.. +.-.+++.+++|+
T Consensus 9 livdd~~~~~~~l~~~L~~~g~~v~--~~~------------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~ 74 (127)
T 2gkg_A 9 LIVESDTALSATLRSALEGRGFTVD--ETT------------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKK 74 (127)
T ss_dssp EEECSCHHHHHHHHHHHHHHTCEEE--EEC------------CHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHhcCceEE--Eec------------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhc
Confidence 56777654 4668889999886433 221 124578888888777665544433 4445677788877
Q ss_pred ccccceeEeeEe
Q 016052 256 ISRFGTWPVAML 267 (396)
Q Consensus 256 ir~vGvWPVGlv 267 (396)
......-||-++
T Consensus 75 ~~~~~~~~ii~~ 86 (127)
T 2gkg_A 75 DDDLKNVPIVII 86 (127)
T ss_dssp STTTTTSCEEEE
T ss_pred CccccCCCEEEE
Confidence 532233354444
No 42
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=22.37 E-value=1.3e+02 Score=27.97 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=47.9
Q ss_pred HHHHHHhhhhcCCCCCeeEEEE-ecC--CCCHHHHHHHHhcC--CceeEeeecCCCCCC---CCcc--hhHHHHHHHHHH
Q 016052 159 YFLNRLAQVLRLVQPPLLWIVV-EEN--AASYETAELLRKTG--VMYRQLVSQKNSSSV---KDRG--VHQRNLALEHIE 228 (396)
Q Consensus 159 a~LtRLa~TL~lVp~~L~WIVV-Ed~--~~s~~va~lL~~sG--l~y~HL~~~~~~~~~---~~rg--~~QRN~AL~~Ir 228 (396)
.+|..|...|+.++ .+.||-+ +-. .-+.+..+.|+++| +.+.|++...-.... -.|+ ..+-..+++.++
T Consensus 71 ~~l~~Ll~~l~~~~-gi~~ir~~~~~p~~l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~ 149 (304)
T 2qgq_A 71 QALPDLLRRLNSLN-GEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIR 149 (304)
T ss_dssp CCHHHHHHHHHTSS-SSCEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCcEEEEeeeecccCCHHHHHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 46777888887775 7889854 332 23788999999999 889998876522110 1222 456667788888
Q ss_pred hh
Q 016052 229 RH 230 (396)
Q Consensus 229 ~~ 230 (396)
+.
T Consensus 150 ~~ 151 (304)
T 2qgq_A 150 ER 151 (304)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 43
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=21.34 E-value=2.3e+02 Score=20.91 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=45.7
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+||||... .....++|++.|.... .+. .-..|++.++++..+-|+.=.+..+.=.+++.++||+.
T Consensus 5 livdd~~~~~~~l~~~L~~~~~~v~--~~~------------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 5 LIVEDNELNMKLFHDLLEAQGYETL--QTR------------EGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEE--EES------------CHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred EEEcCCHHHHHHHHHHHHHcCcEEE--EeC------------CHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 57788765 4568889998875422 221 12358888888776655543333333346777777765
Q ss_pred cccceeEeeEeec
Q 016052 257 SRFGTWPVAMLAQ 269 (396)
Q Consensus 257 r~vGvWPVGlvg~ 269 (396)
....--||=++++
T Consensus 71 ~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 71 DDLAHIPVVAVTA 83 (124)
T ss_dssp TTTTTSCEEEEC-
T ss_pred ccccCCcEEEEEC
Confidence 4334456655543
No 44
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=21.06 E-value=2e+02 Score=21.88 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=46.5
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCC-CcchhhhhHhhhc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDD-NIYTMDLFDSLRE 255 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDD-NtYdl~LFdemR~ 255 (396)
+||||... .....++|++.|....+. +. .-..|++.++++..+-||.=.+.. +.-.+++.++||+
T Consensus 13 Livdd~~~~~~~l~~~L~~~g~~v~~~-~~------------~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~ 79 (140)
T 3cg0_A 13 LIVEDGRLAAATLRIQLESLGYDVLGV-FD------------NGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAA 79 (140)
T ss_dssp EEECCBHHHHHHHHHHHHHHTCEEEEE-ES------------SHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHCCCeeEEE-EC------------CHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHh
Confidence 57777654 456888999887643321 21 124588888888777666544443 3445677777776
Q ss_pred ccccceeEeeEeec
Q 016052 256 ISRFGTWPVAMLAQ 269 (396)
Q Consensus 256 ir~vGvWPVGlvg~ 269 (396)
. ..-||-++++
T Consensus 80 ~---~~~~ii~ls~ 90 (140)
T 3cg0_A 80 G---CNLPIIFITS 90 (140)
T ss_dssp H---SCCCEEEEEC
T ss_pred C---CCCCEEEEec
Confidence 5 3345555543
No 45
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=20.81 E-value=1.6e+02 Score=24.06 Aligned_cols=68 Identities=21% Similarity=0.162 Sum_probs=41.5
Q ss_pred eeEEEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhh
Q 016052 175 LLWIVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSL 253 (396)
Q Consensus 175 L~WIVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdem 253 (396)
+.=+||||... ...+.++|++.|...++.+. .=..||+.+++++-+-|+.=..--+.=-+++.++|
T Consensus 9 ~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~-------------~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~l 75 (123)
T 2lpm_A 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATAS-------------RMQEALDIARKGQFDIAIIDVNLDGEPSYPVADIL 75 (123)
T ss_dssp CCEEEESSSTTTSHHHHHHHHHHCCCCCBCSC-------------CHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEEC-------------CHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHH
Confidence 33369999775 57799999999854322211 12358999999887766442111122224667777
Q ss_pred hc
Q 016052 254 RE 255 (396)
Q Consensus 254 R~ 255 (396)
|+
T Consensus 76 r~ 77 (123)
T 2lpm_A 76 AE 77 (123)
T ss_dssp HH
T ss_pred Hc
Confidence 75
No 46
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.77 E-value=2.5e+02 Score=21.08 Aligned_cols=74 Identities=23% Similarity=0.224 Sum_probs=45.5
Q ss_pred EEEecCCC-CHHHHHHHHhcCCceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcc
Q 016052 178 IVVEENAA-SYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREI 256 (396)
Q Consensus 178 IVVEd~~~-s~~va~lL~~sGl~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~i 256 (396)
+||||... .....++|++.|.... .+.. =..||+.++++..+-|+.=.+..+.=-+++..++|+.
T Consensus 6 livdd~~~~~~~l~~~L~~~g~~v~--~~~~------------~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 6 LVVDDEKPIADILEFNLRKEGYEVH--CAHD------------GNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCEEE--EESS------------HHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred EEEECCHHHHHHHHHHHHhCCEEEE--EeCC------------HHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 57888665 4567889998885322 2211 2358888888877766554444444456777888764
Q ss_pred cccceeEeeEee
Q 016052 257 SRFGTWPVAMLA 268 (396)
Q Consensus 257 r~vGvWPVGlvg 268 (396)
. . -||=+++
T Consensus 72 ~--~-~~ii~~t 80 (120)
T 3f6p_A 72 Y--D-MPIIMLT 80 (120)
T ss_dssp C--C-SCEEEEE
T ss_pred C--C-CCEEEEE
Confidence 2 2 2554444
Done!