BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016053
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386
I+DRV F+ K VA LA D+++ S+ E FG + +EAMA +P +
Sbjct: 285 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCI 332
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386
I+DRV F+ K VA LA D+++ S+ E FG + +EAMA +P +
Sbjct: 265 IEDRVLFLGKQDNVAELLAMSDLMLLLSEK--ESFGLVLLEAMACGVPCI 312
>pdb|1KQF|B Chain B, Formate Dehydrogenase N From E. Coli
pdb|1KQG|B Chain B, Formate Dehydrogenase N From E. Coli
Length = 294
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268
+E +K T +H G KE++E+AE VAK L+ E GV N
Sbjct: 171 QEPACVKTCPTGAIHFGTKKEMLELAEQRVAK--LKARGYEHAGVYN 215
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 306 VPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364
V + V IG +D++A + + +Q+ I+ + + A +LA + Q
Sbjct: 167 VEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQC 226
Query: 365 QAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 227 LAWGANFVAVGVDTMLY 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,246,330
Number of Sequences: 62578
Number of extensions: 371618
Number of successful extensions: 813
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 5
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)