BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016053
(396 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R9N2|LPSB_RHIME Lipopolysaccharide core biosynthesis mannosyltransferase LpsB
OS=Rhizobium meliloti (strain 1021) GN=lpsB PE=3 SV=1
Length = 351
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 227 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286
+ +P+T ++H ++K + AK+ +LG+ V KG D
Sbjct: 132 LDVPNTVILHGIDTKRFQPPFDKTEAKK--------ALGLDPAKKFVGCFGRVRHQKGTD 183
Query: 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346
LF+ S L P A++ G FESEL+ V + + DR+ FV +
Sbjct: 184 LFVDSMIALLPC-------RPDWGAIVAGRATGPHLAFESELKERVAKAGLADRILFVGE 236
Query: 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386
+ + A+D+ V Q W E FG +EAMA +PV+
Sbjct: 237 HTNIPDWYRALDLFVA-PQRW-EGFGLTPLEAMATGVPVV 274
>sp|C7R101|MSHA_JONDD D-inositol 3-phosphate glycosyltransferase OS=Jonesia denitrificans
(strain ATCC 14870 / DSM 20603 / CIP 55134) GN=mshA PE=3
SV=1
Length = 424
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
R+ R +LG+ E + + KG D+ + ++L L++ ++ + P VIIG
Sbjct: 219 RQAERVALGLAPEGDVIVFAGRIQPLKGPDVLV----DALALLRSQQPDRPMPTLVIIGG 274
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRI 374
ELR V Q+ + V FV T+A ++ D + S+ E FG +
Sbjct: 275 PSGRPAAL-GELRARVFQRGVAQHVRFVPPADRPTLAQWMRVADYVAMPSR--NESFGLV 331
Query: 375 TIEAMAFQLPVL 386
IEA A PV+
Sbjct: 332 AIEAQACGTPVI 343
>sp|P46915|COTSA_BACSU Spore coat protein SA OS=Bacillus subtilis (strain 168) GN=cotSA
PE=1 SV=1
Length = 377
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
RE +R LG+ + ++ + +S+ KG + L + + +E E P V V IGS
Sbjct: 179 REEMRSELGLHGKKIVL-FVGRLSKVKGPHILLQALPDIIE-------EHPDVMMVFIGS 230
Query: 317 DMNAQTKFESELRNYV--------MQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368
++EL NYV MQK + FV K + DV V +SQ W
Sbjct: 231 KWFG----DNELNNYVKHLHTLGAMQKDHVTFIQFV-KPKDIPRLYTMSDVFVCSSQ-WQ 284
Query: 369 ECFGRITIEAMAFQLPVLV 387
E R+ EAMA LP++
Sbjct: 285 EPLARVHYEAMAAGLPIIT 303
>sp|Q8FSH1|MSHA_COREF D-inositol 3-phosphate glycosyltransferase OS=Corynebacterium
efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM
11189 / NBRC 100395) GN=mshA PE=3 SV=1
Length = 424
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293
VV G L D +R RE LGV + A + + KG + +H+
Sbjct: 192 VVSPGADIALYTPGNDRATERSRRE-----LGVPLHAKVVAFVGRLQPFKGPQVLIHAVA 246
Query: 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT---V 350
E LE ++ L V +I G E+ RN ++ + R+ F++ V
Sbjct: 247 ELLERDPQRNLRV-----LICGGPSGPSATPET-YRNLAVELGVDKRIRFLDPRPPEELV 300
Query: 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLV 387
A Y AA D++ S + E FG + +EA A PV+
Sbjct: 301 AVYRAA-DIIAVPS--YNESFGLVAMEAQATGTPVVA 334
>sp|A1R8N8|MSHA_ARTAT D-inositol 3-phosphate glycosyltransferase OS=Arthrobacter
aurescens (strain TC1) GN=mshA PE=3 SV=1
Length = 408
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 231 DTYVVHLGNSKELMEVAEDNVAKRVL----REHVRESLGVRNEDLLFAIINSVSRGKGQD 286
D V H G + ++VA V +V R R GVR + + R KG
Sbjct: 176 DELVSHYGADLDRIDVAPPGVDLKVFTPSFRRKSRSLRGVRPDSFHILFAGRIQRLKGPQ 235
Query: 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346
+F+ ++ ++++++ ++ + I+GS A+ + L++++ + D V ++
Sbjct: 236 VFV----KAAGILRKRRPDI-DLEMTILGSLSGAK---DFNLQHFIEDAGLADVV--THR 285
Query: 347 TLTVAPYLAA----IDVLVQNSQAWGECFGRITIEAMAFQLPVL 386
VAP LA+ DV+V S + E FG + +EA A PV+
Sbjct: 286 PPVVAPELASWFRSADVVVMPS--FSESFGLVALEAQACGTPVV 327
>sp|P18305|443R_IIV6 Uncharacterized protein 443R OS=Invertebrate iridescent virus 6
GN=IIV6-443R PE=3 SV=2
Length = 2432
Score = 38.9 bits (89), Expect = 0.068, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 110 ITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAV-AGKWLDAV 168
IT+ + D VI+ ++ + D GV V GQ TA+ DL V + V G+ +D+
Sbjct: 13 ITVVRGIPGDIVIFGIDGTIADSGVPVSIGSGQAKQPTAVPGDLAVFGSGVNQGQTIDSG 72
Query: 169 LKEDVPRV-LPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAE 215
L D V LP VLW ++ + LPL G M + ++ +
Sbjct: 73 LTVDDSSVSLPTVLWSSQKIES---LIPTGSFLPLAGGTMTGTIISKD 117
>sp|B2HQV2|MSHA_MYCMM D-inositol 3-phosphate glycosyltransferase OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=mshA PE=3 SV=1
Length = 466
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 23/158 (14%)
Query: 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293
VVH G E+ + R+ R +LG+R E+ + A + + K D+ L +
Sbjct: 227 VVHPGVDLEVFRPGD--------RQQARTALGLRPEEKVVAFVGRIQPLKAPDIVLRAVA 278
Query: 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV--NKTLTVA 351
+ +P V ++ G + L + I +RV F+ +A
Sbjct: 279 K-----------LPGVRIIVAGGPSGSGLASPDGLAQLADELGIAERVTFLPPQSRTDLA 327
Query: 352 PYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389
A+D++ S + E FG + +EA A PV+ +
Sbjct: 328 RVFHAVDLVAIPS--YSESFGLVAVEAQACGTPVVAAA 363
>sp|A7TZT2|MFPS_AGRT5 Mannosylfructose-phosphate synthase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=mfpsA PE=1 SV=1
Length = 454
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
R+ +R+ G + +L + ++ KG DL + F ++ E++ E +H + G
Sbjct: 239 RQMIRQRFGFEGKVVL--ALGRLATNKGYDLLIDGF----SVLAEREPEA-RLHLAVGGE 291
Query: 317 DMNAQ-TKFESELRNYVMQKKIQDRVHFVNKTLT--VAPYLAAIDVLVQNSQAWGECFGR 373
+M+ Q T ++L+ V ++D+V F + A D+ V +S+ E FG
Sbjct: 292 NMDEQETTILNQLKERVKSLGLEDKVAFSGYVADEDLPDIYRAADLFVLSSRY--EPFGM 349
Query: 374 ITIEAMAFQLPVLV 387
IEAMA P +V
Sbjct: 350 TAIEAMASGTPTVV 363
>sp|C3PK12|MSHA_CORA7 D-inositol 3-phosphate glycosyltransferase OS=Corynebacterium
aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1)
GN=mshA PE=3 SV=1
Length = 421
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 18/164 (10%)
Query: 230 PDT-YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288
PD VV G +L D + +R R LG+ + A + + + KG D+
Sbjct: 187 PDNIVVVSPGADTDLYTPGTDRMTERA-----RRQLGIPLHTKVVAFVGRLQKFKGPDVL 241
Query: 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348
+ + E +E +++L V VI G A + ++ N + ++ V F++
Sbjct: 242 IRATAELMERDPDRRLRV-----VICGGASGANSSPDT-YHNLARELGVERVVRFLSPRP 295
Query: 349 T---VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389
VA Y AA V V ++ E FG + +EA A PV+ +
Sbjct: 296 PQELVAIYQAADIVAV---PSYNESFGLVAMEAQASGTPVVAAA 336
>sp|O05083|Y1698_HAEIN Uncharacterized glycosyltransferase HI_1698 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_1698 PE=3 SV=1
Length = 353
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 325 ESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384
E L+N I+D V+F+ +T V+ Y + + SQ G + IEAMAF LP
Sbjct: 224 EENLKNLAKALDIEDSVNFIPRTNDVSFYYESSSIYCLPSQTEG--LPLVVIEAMAFGLP 281
Query: 385 VLVLS 389
++ +
Sbjct: 282 IVAFN 286
>sp|B1MHQ0|MSHA_MYCA9 D-inositol 3-phosphate glycosyltransferase OS=Mycobacterium
abscessus (strain ATCC 19977 / DSM 44196) GN=mshA PE=3
SV=1
Length = 443
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 15/132 (11%)
Query: 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN 319
R G+R ++ + A + + K DL + + +P V +I+G
Sbjct: 228 ARAEFGLRADEQVVAFVGRIQPLKAPDLLVRA-----------AERLPGVRVLIVGGPSG 276
Query: 320 AQTKFESELRNYVMQKKIQDRVHFVNKTLT--VAPYLAAIDVLVQNSQAWGECFGRITIE 377
+ + L++ + I DRV F+ +A A D++ S + E FG + IE
Sbjct: 277 SGLDEPTALQDLAVDLGIADRVTFLPPQTRERLAQVYRAADIVAVPS--YSESFGLVAIE 334
Query: 378 AMAFQLPVLVLS 389
A A PV+ +
Sbjct: 335 AQACGTPVVAAA 346
>sp|D0L476|MSHA_GORB4 D-inositol 3-phosphate glycosyltransferase OS=Gordonia bronchialis
(strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667)
GN=mshA PE=3 SV=1
Length = 458
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316
RE R SLG+ + + + + K DL + + + LI+ + V +I+G
Sbjct: 215 REMARTSLGLDQNEAIVTFVGRIQPLKAPDLLIEA---AAPLIRRSRTSRRPVRVLIVGG 271
Query: 317 DMNAQTKFESELRNYVMQKKIQDRVHFV--NKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374
+ + L + I D V F+ +A A +++ S + E FG +
Sbjct: 272 PSGSGLDRPTALIDLAHDLGIADAVTFLPPQAPARLADVYRASNLVAVPSHS--ESFGLV 329
Query: 375 TIEAMAFQLPVLV 387
IEA A PVL
Sbjct: 330 AIEAQACGTPVLA 342
>sp|Q32DU2|RHMA_SHIDS 2-keto-3-deoxy-L-rhamnonate aldolase OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 301 EKKLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDV 359
+K L+V + V IG +D++A + + +Q+ I+ + + A +LA
Sbjct: 162 DKILDVQGIDGVFIGPADLSASLGYPDNAGHLEVQRIIETSIRRIRDAGKAAGFLAVAPD 221
Query: 360 LVQNSQAWGECFGRITIEAMAF 381
+ Q AWG F + ++ M +
Sbjct: 222 MAQQCLAWGANFVAVGVDTMLY 243
>sp|A9N5C4|RHMA_SALPB 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|B4SYW1|RHMA_SALNS 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella newport (strain
SL254) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|B4TBF6|RHMA_SALHS 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella heidelberg
(strain SL476) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|B5R262|RHMA_SALEP 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella enteritidis PT4
(strain P125109) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|B5RCB4|RHMA_SALG2 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|Q8Z549|RHMA_SALTI 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella typhi GN=rhmA
PE=3 SV=1
Length = 267
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIESCIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|D2Q1C4|MSHA_KRIFD D-inositol 3-phosphate glycosyltransferase OS=Kribbella flavida
(strain DSM 17836 / JCM 10339 / NBRC 14399) GN=mshA PE=3
SV=1
Length = 424
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 261 RESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320
R ++GVR + ++ A + + K DL + + LE ++ +L V AVI G N
Sbjct: 223 RRAVGVREDAIVLAFVGRIQPLKAPDLLIRAAARMLE--RQPELRDRLVVAVIGGPSGNG 280
Query: 321 QTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEA 378
E+ + + D FV +A + A V+ S + E FG + +EA
Sbjct: 281 MEHPEAHA-ELARRLGVDDVTRFVKPMPRPGLADWYRAASVVCVPS--YSESFGLVALEA 337
Query: 379 MAFQLPVLVLS 389
A PV+ +
Sbjct: 338 QACGTPVVAAA 348
>sp|C7QKE8|MSHA2_CATAD D-inositol 3-phosphate glycosyltransferase 2 OS=Catenulispora
acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC
102108 / JCM 14897) GN=mshA2 PE=3 SV=1
Length = 427
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 7/130 (5%)
Query: 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN 319
RES+G+ + + + + K D+ L + + ELI + + ++G
Sbjct: 216 ARESVGLPPDAAVLLFVGRIQPLKAPDVLLRA---AAELIAREPERREKLVVAVVGGPSG 272
Query: 320 AQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIE 377
+ + L + I D V FV +A + A D+ V S + E FG + IE
Sbjct: 273 SGLAEPTHLHRLARRLGIADVVRFVKPVDQTRLADWYRAADIAVVPS--YSESFGLVAIE 330
Query: 378 AMAFQLPVLV 387
A A PV+
Sbjct: 331 AQACGTPVVA 340
>sp|C8XA09|MSHA_NAKMY D-inositol 3-phosphate glycosyltransferase OS=Nakamurella
multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543
/ Y-104) GN=mshA PE=3 SV=1
Length = 466
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 17/160 (10%)
Query: 238 GNSKELMEVAEDNVAKRVL----REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293
G + L++V V V R R++LG+ ++ + + KG D+ + + +
Sbjct: 212 GADERLIDVVPPGVDTEVFSPGDRAAARQALGIGPDEKVIVFAGRIQPLKGPDVVVRAVH 271
Query: 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 353
+ + +++ + VI+G A + +L V +D + F + A
Sbjct: 272 QLADRYPDQRWRL-----VIVGGASGAGRRPGHQLHELVDLLGSRDTIDF--RPAVPAAE 324
Query: 354 LA----AIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389
LA A DV+ S + E FG + IEA A PV+ +
Sbjct: 325 LAVIYRAADVVAVPS--YNESFGLVAIEAQASGTPVVAAA 362
>sp|Q8ZNG0|RHMA_SALTY 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|B4TPH2|RHMA_SALSV 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella schwarzengrund
(strain CVM19633) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|C0Q079|RHMA_SALPC 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella paratyphi C
(strain RKS4594) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|Q57M64|RHMA_SALCH 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella choleraesuis
(strain SC-B67) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|B5EZG8|RHMA_SALA4 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella agona (strain
SL483) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|A6TBU6|RHMA_KLEP7 2-keto-3-deoxy-L-rhamnonate aldolase OS=Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
GN=rhmA PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + + +Q+ I+ + + A +LA + +
Sbjct: 165 LEVDGIDGVFIGPADLSASLGYPDDAGHPDVQRVIEQSIRRIRAAGKAAGFLAVDPAMAE 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|B5FNS9|RHMA_SALDC 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella dublin (strain
CT_02021853) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAVDPTMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|B5BCQ6|RHMA_SALPK 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella paratyphi A
(strain AKU_12601) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|Q5PI50|RHMA_SALPA 2-keto-3-deoxy-L-rhamnonate aldolase OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=rhmA PE=3 SV=1
Length = 267
Score = 33.1 bits (74), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
LEV + V IG +D++A + + +Q+ I+ ++ + A +LA + Q
Sbjct: 165 LEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAVDPAMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 KCLAWGANFVAVGVDTMLY 243
>sp|Q0TFJ7|RHMA_ECOL5 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=rhmA PE=3 SV=1
Length = 267
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 304 LEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362
L+V + V IG +D++A + + +Q+ I+ + + A +LA + Q
Sbjct: 165 LDVEGIDGVFIGPADLSASLGYPDNAGHQEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQ 224
Query: 363 NSQAWGECFGRITIEAMAF 381
AWG F + ++ M +
Sbjct: 225 QCLAWGTNFVAVGVDTMLY 243
>sp|D7C367|MSHA_STRBB D-inositol 3-phosphate glycosyltransferase OS=Streptomyces
bingchenggensis (strain BCW-1) GN=mshA PE=3 SV=1
Length = 455
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 12/164 (7%)
Query: 231 DTYVVHLGNSKELMEVAEDNVAKRVLRE-----HVRESLGVRNEDLLFAIINSVSRGKGQ 285
D V H G EL+ V V R R LG+ + L+ + K
Sbjct: 214 DELVRHYGADPELVAVVHPGVNLERFRPADGRAAARARLGLPPDALIPLFAGRIQPLKAP 273
Query: 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345
D+ LH+ L+ ++ +L V V+ G + K E L + + D + F
Sbjct: 274 DILLHAVAHLLD--EDPRLRERIVVPVVGGPSGSGLAKPE-RLHKLAARLGVSDVIRFRP 330
Query: 346 KTLT--VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLV 387
+A + A VLV S + E FG + IEA A PV+
Sbjct: 331 PCTQDELADWYRAASVLVMPS--YNESFGLVAIEAQACGTPVIA 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,941,684
Number of Sequences: 539616
Number of extensions: 5408116
Number of successful extensions: 14892
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 14885
Number of HSP's gapped (non-prelim): 41
length of query: 396
length of database: 191,569,459
effective HSP length: 120
effective length of query: 276
effective length of database: 126,815,539
effective search space: 35001088764
effective search space used: 35001088764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)