Query 016053
Match_columns 396
No_of_seqs 225 out of 1941
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03088 stp2 sugar transfera 100.0 1.9E-34 4.1E-39 275.4 27.8 290 75-395 2-309 (374)
2 cd03796 GT1_PIG-A_like This fa 100.0 1.7E-34 3.7E-39 277.7 25.6 275 76-395 1-306 (398)
3 cd03812 GT1_CapH_like This fam 100.0 3.5E-33 7.6E-38 264.7 28.4 283 76-395 1-303 (358)
4 PLN02316 synthase/transferase 100.0 4.5E-33 9.8E-38 283.6 29.5 303 73-394 586-955 (1036)
5 PRK00654 glgA glycogen synthas 100.0 4.1E-33 8.8E-38 272.7 27.9 305 75-395 1-393 (466)
6 PRK15179 Vi polysaccharide bio 100.0 3.7E-33 8.1E-38 278.6 27.0 288 76-394 283-627 (694)
7 cd03819 GT1_WavL_like This fam 100.0 1.3E-32 2.7E-37 260.5 27.2 280 82-394 5-300 (355)
8 PRK14099 glycogen synthase; Pr 100.0 2.5E-32 5.4E-37 266.6 28.9 305 72-394 1-405 (485)
9 cd04962 GT1_like_5 This family 100.0 2.1E-32 4.6E-37 260.7 27.7 283 75-395 1-307 (371)
10 cd04951 GT1_WbdM_like This fam 100.0 2.7E-32 5.8E-37 258.6 28.0 289 76-395 1-299 (360)
11 PLN02939 transferase, transfer 100.0 3.3E-32 7.2E-37 272.6 29.3 307 73-394 480-892 (977)
12 PLN02871 UDP-sulfoquinovose:DA 100.0 1.8E-32 3.9E-37 268.5 26.5 284 72-394 56-367 (465)
13 PRK10307 putative glycosyl tra 100.0 1.4E-32 3E-37 265.8 24.7 288 75-393 1-342 (412)
14 TIGR03449 mycothiol_MshA UDP-N 100.0 5.7E-32 1.2E-36 261.0 25.6 277 86-394 19-338 (405)
15 cd03792 GT1_Trehalose_phosphor 100.0 7.2E-32 1.6E-36 257.3 25.0 288 76-394 1-309 (372)
16 TIGR02095 glgA glycogen/starch 100.0 2.2E-31 4.7E-36 261.6 28.2 304 75-395 1-402 (473)
17 PRK15427 colanic acid biosynth 100.0 1.2E-31 2.7E-36 257.4 24.8 286 75-395 1-341 (406)
18 PRK15490 Vi polysaccharide bio 100.0 2.6E-31 5.6E-36 254.2 26.2 288 76-395 163-509 (578)
19 cd03805 GT1_ALG2_like This fam 100.0 1.7E-31 3.7E-36 256.6 24.7 290 75-394 1-335 (392)
20 PRK09922 UDP-D-galactose:(gluc 100.0 1.4E-31 3.1E-36 253.9 23.9 277 75-394 1-294 (359)
21 cd03791 GT1_Glycogen_synthase_ 100.0 7.6E-31 1.6E-35 258.4 26.8 304 76-395 1-407 (476)
22 PRK14098 glycogen synthase; Pr 100.0 1.2E-30 2.5E-35 255.1 27.2 304 75-394 6-417 (489)
23 TIGR02472 sucr_P_syn_N sucrose 100.0 5.9E-31 1.3E-35 255.8 24.8 292 85-395 24-377 (439)
24 cd03807 GT1_WbnK_like This fam 100.0 1.6E-30 3.4E-35 245.6 26.3 285 76-395 1-305 (365)
25 KOG1111 N-acetylglucosaminyltr 100.0 7.4E-32 1.6E-36 237.9 15.4 278 76-394 2-307 (426)
26 PRK15484 lipopolysaccharide 1, 100.0 1.8E-30 4E-35 247.7 26.3 274 75-395 3-314 (380)
27 cd03802 GT1_AviGT4_like This f 100.0 3.7E-31 8E-36 248.5 20.3 267 75-395 1-281 (335)
28 TIGR02149 glgA_Coryne glycogen 100.0 2.7E-30 5.9E-35 247.8 26.0 277 75-394 1-316 (388)
29 PLN02846 digalactosyldiacylgly 100.0 1.7E-30 3.6E-35 247.8 22.7 281 73-393 3-335 (462)
30 cd03811 GT1_WabH_like This fam 100.0 8.5E-30 1.8E-34 239.0 23.7 286 76-394 1-299 (353)
31 cd03806 GT1_ALG11_like This fa 100.0 2.7E-29 5.8E-34 242.2 26.3 290 76-394 2-360 (419)
32 PLN02949 transferase, transfer 100.0 4.5E-29 9.8E-34 241.4 27.4 286 75-394 34-390 (463)
33 TIGR02468 sucrsPsyn_pln sucros 100.0 1.6E-29 3.5E-34 257.0 25.2 308 73-394 168-607 (1050)
34 TIGR02470 sucr_synth sucrose s 100.0 4.3E-29 9.3E-34 249.3 26.9 307 74-394 255-679 (784)
35 cd03821 GT1_Bme6_like This fam 100.0 1.7E-29 3.7E-34 239.4 22.8 288 76-394 1-317 (375)
36 PRK10125 putative glycosyl tra 100.0 1.4E-29 3E-34 242.5 21.3 275 75-394 1-342 (405)
37 cd03818 GT1_ExpC_like This fam 100.0 6.9E-29 1.5E-33 238.7 23.9 275 76-395 1-337 (396)
38 cd03800 GT1_Sucrose_synthase T 100.0 9.5E-29 2.1E-33 237.7 24.4 278 86-394 20-338 (398)
39 cd03795 GT1_like_4 This family 100.0 1.6E-28 3.4E-33 232.5 25.5 277 76-394 1-301 (357)
40 cd03816 GT1_ALG1_like This fam 100.0 1.4E-28 3E-33 237.4 25.3 292 73-394 2-353 (415)
41 cd05844 GT1_like_7 Glycosyltra 100.0 7.1E-29 1.5E-33 236.1 22.8 271 76-395 1-307 (367)
42 cd03799 GT1_amsK_like This is 100.0 6.2E-29 1.4E-33 235.0 22.1 278 76-395 1-298 (355)
43 cd04955 GT1_like_6 This family 100.0 1.5E-28 3.2E-33 233.3 24.5 272 76-395 1-305 (363)
44 cd03817 GT1_UGDG_like This fam 100.0 1.4E-28 3.1E-33 233.1 24.4 287 76-395 1-315 (374)
45 cd03820 GT1_amsD_like This fam 100.0 2.4E-28 5.1E-33 228.9 25.2 269 76-392 1-286 (348)
46 cd03822 GT1_ecORF704_like This 100.0 1.7E-28 3.6E-33 232.6 23.9 285 76-393 1-304 (366)
47 cd03825 GT1_wcfI_like This fam 100.0 6.8E-28 1.5E-32 228.8 23.2 261 75-395 1-301 (365)
48 cd03823 GT1_ExpE7_like This fa 100.0 2.5E-27 5.4E-32 223.7 26.1 266 76-394 1-299 (359)
49 cd03808 GT1_cap1E_like This fa 100.0 3E-27 6.5E-32 222.4 25.6 272 76-395 1-300 (359)
50 PLN02501 digalactosyldiacylgly 100.0 1.2E-27 2.5E-32 231.5 22.7 279 74-394 322-654 (794)
51 cd03809 GT1_mtfB_like This fam 100.0 3.7E-28 8E-33 230.2 17.4 285 76-395 1-309 (365)
52 cd03814 GT1_like_2 This family 100.0 2.4E-27 5.2E-32 224.4 21.7 278 76-394 1-302 (364)
53 cd03801 GT1_YqgM_like This fam 100.0 8.1E-27 1.8E-31 219.9 24.8 288 76-395 1-312 (374)
54 TIGR03087 stp1 sugar transfera 100.0 6.5E-27 1.4E-31 225.0 21.5 277 77-392 1-332 (397)
55 PLN00142 sucrose synthase 100.0 1.1E-26 2.4E-31 232.1 23.3 232 149-394 407-702 (815)
56 PLN02275 transferase, transfer 100.0 2.4E-26 5.2E-31 218.7 24.5 279 76-394 6-345 (371)
57 cd03794 GT1_wbuB_like This fam 100.0 1.8E-26 4E-31 219.7 23.5 287 76-395 1-336 (394)
58 cd03813 GT1_like_3 This family 99.9 3.2E-27 6.8E-32 231.7 17.4 211 149-394 172-406 (475)
59 cd03798 GT1_wlbH_like This fam 99.9 2.6E-26 5.6E-31 217.1 22.9 287 77-394 1-314 (377)
60 TIGR02918 accessory Sec system 99.9 9.7E-26 2.1E-30 220.2 20.5 208 148-394 209-429 (500)
61 cd04946 GT1_AmsK_like This fam 99.9 1.1E-23 2.4E-28 202.7 25.9 212 149-395 126-347 (407)
62 cd03804 GT1_wbaZ_like This fam 99.9 8.9E-25 1.9E-29 206.8 17.3 260 76-395 1-297 (351)
63 PHA01633 putative glycosyl tra 99.9 3.6E-23 7.8E-28 190.4 23.0 242 87-394 11-259 (335)
64 PHA01630 putative group 1 glyc 99.9 2.4E-23 5.2E-28 193.7 19.5 230 91-395 14-246 (331)
65 cd04949 GT1_gtfA_like This fam 99.9 2.1E-23 4.6E-28 199.0 18.9 206 149-394 98-315 (372)
66 KOG0853 Glycosyltransferase [C 99.9 9.5E-24 2.1E-28 198.5 15.8 381 1-395 1-402 (495)
67 PRK00726 murG undecaprenyldiph 99.9 1E-21 2.2E-26 186.4 22.7 255 75-392 2-282 (357)
68 cd03785 GT1_MurG MurG is an N- 99.9 1.3E-21 2.7E-26 185.2 22.9 254 76-392 1-282 (350)
69 PRK13609 diacylglycerol glucos 99.9 4.8E-21 1E-25 183.2 24.5 275 73-392 3-304 (380)
70 cd03793 GT1_Glycogen_synthase_ 99.9 2E-21 4.4E-26 186.5 21.0 234 149-396 147-512 (590)
71 TIGR02400 trehalose_OtsA alpha 99.9 3E-21 6.6E-26 186.4 21.3 235 149-394 126-395 (456)
72 cd01635 Glycosyltransferase_GT 99.9 3.6E-21 7.7E-26 169.9 19.8 211 77-395 1-218 (229)
73 cd03788 GT1_TPS Trehalose-6-Ph 99.9 1.4E-21 3E-26 190.2 17.7 235 149-394 130-400 (460)
74 TIGR01133 murG undecaprenyldip 99.9 1.4E-20 3E-25 177.9 21.7 253 75-392 1-280 (348)
75 COG0297 GlgA Glycogen synthase 99.9 4E-20 8.8E-25 176.8 24.8 301 75-394 1-404 (487)
76 PRK05749 3-deoxy-D-manno-octul 99.9 2.4E-20 5.2E-25 181.1 20.4 263 88-390 61-352 (425)
77 PLN02605 monogalactosyldiacylg 99.8 1.7E-19 3.6E-24 172.5 19.3 212 144-390 94-310 (382)
78 PF00534 Glycos_transf_1: Glyc 99.8 8.4E-20 1.8E-24 154.7 14.3 125 257-394 2-128 (172)
79 PRK13608 diacylglycerol glucos 99.8 2.1E-18 4.6E-23 165.2 19.9 274 74-392 5-304 (391)
80 PLN03063 alpha,alpha-trehalose 99.8 1.7E-18 3.7E-23 177.4 19.7 230 150-394 147-415 (797)
81 cd04950 GT1_like_1 Glycosyltra 99.8 1.1E-18 2.5E-23 166.2 17.0 266 76-392 5-312 (373)
82 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 5.7E-17 1.2E-21 154.1 22.2 275 76-391 1-305 (363)
83 TIGR02398 gluc_glyc_Psyn gluco 99.8 1.6E-16 3.4E-21 153.0 21.7 156 232-395 250-422 (487)
84 PRK14501 putative bifunctional 99.7 2.3E-17 5E-22 169.3 16.9 234 149-393 132-401 (726)
85 KOG1387 Glycosyltransferase [C 99.7 2.3E-15 4.9E-20 133.2 20.9 287 75-394 44-392 (465)
86 PRK00025 lpxB lipid-A-disaccha 99.7 1.7E-15 3.8E-20 144.9 20.3 265 75-388 2-286 (380)
87 TIGR00236 wecB UDP-N-acetylglu 99.7 9.2E-15 2E-19 139.1 22.8 273 75-392 1-304 (365)
88 TIGR00215 lpxB lipid-A-disacch 99.6 4E-14 8.7E-19 135.0 21.3 269 75-390 6-294 (385)
89 PRK09814 beta-1,6-galactofuran 99.6 1.4E-13 3E-18 129.2 16.3 237 84-394 12-272 (333)
90 PF13692 Glyco_trans_1_4: Glyc 99.5 1.9E-14 4.1E-19 116.7 6.9 101 270-390 2-103 (135)
91 COG0438 RfaG Glycosyltransfera 99.5 2.4E-13 5.2E-18 126.9 14.7 136 231-394 173-312 (381)
92 PLN03064 alpha,alpha-trehalose 99.5 1.3E-12 2.7E-17 134.1 17.5 234 150-394 231-499 (934)
93 PF13439 Glyco_transf_4: Glyco 99.4 1.6E-13 3.5E-18 116.0 4.0 157 77-244 1-176 (177)
94 PRK12446 undecaprenyldiphospho 99.4 1.7E-10 3.6E-15 108.8 24.6 253 75-391 2-281 (352)
95 TIGR03590 PseG pseudaminic aci 99.3 1.3E-09 2.8E-14 99.3 24.6 253 76-390 1-268 (279)
96 KOG2941 Beta-1,4-mannosyltrans 99.2 8E-09 1.7E-13 92.2 24.2 283 88-391 24-374 (444)
97 COG0707 MurG UDP-N-acetylgluco 99.2 6.9E-09 1.5E-13 97.0 24.8 256 76-393 2-283 (357)
98 TIGR03713 acc_sec_asp1 accesso 99.2 5.2E-10 1.1E-14 109.9 17.5 154 199-386 269-455 (519)
99 TIGR02094 more_P_ylases alpha- 99.2 1.4E-09 3.1E-14 108.3 19.9 123 266-392 385-513 (601)
100 PF05693 Glycogen_syn: Glycoge 99.1 7.6E-09 1.7E-13 100.0 17.6 231 150-392 142-503 (633)
101 PF13579 Glyco_trans_4_4: Glyc 99.1 2.8E-10 6E-15 94.4 6.1 134 87-238 1-160 (160)
102 cd04299 GT1_Glycogen_Phosphory 99.0 5.4E-08 1.2E-12 99.0 20.2 124 266-392 474-602 (778)
103 PRK10117 trehalose-6-phosphate 99.0 6.9E-08 1.5E-12 92.7 19.4 235 149-395 122-393 (474)
104 TIGR02919 accessory Sec system 98.9 2.5E-08 5.4E-13 95.9 15.8 142 201-391 238-380 (438)
105 PF00982 Glyco_transf_20: Glyc 98.9 3E-08 6.5E-13 96.2 16.3 236 149-394 140-412 (474)
106 PF13528 Glyco_trans_1_3: Glyc 98.9 1.4E-07 2.9E-12 88.1 19.0 92 268-395 191-283 (318)
107 PF04007 DUF354: Protein of un 98.9 1.1E-06 2.5E-11 81.3 22.7 250 75-391 1-276 (335)
108 PF09314 DUF1972: Domain of un 98.8 1.6E-07 3.4E-12 78.9 12.5 149 74-240 1-185 (185)
109 PF02684 LpxB: Lipid-A-disacch 98.8 1.4E-06 2.9E-11 81.9 20.1 249 89-390 10-287 (373)
110 PLN02205 alpha,alpha-trehalose 98.8 4.5E-07 9.7E-12 94.1 18.3 223 152-383 203-460 (854)
111 COG0380 OtsA Trehalose-6-phosp 98.7 1.4E-06 3.1E-11 83.4 19.8 233 149-394 146-418 (486)
112 cd03784 GT1_Gtf_like This fami 98.7 1.1E-06 2.4E-11 84.7 19.6 93 268-392 238-334 (401)
113 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 2.5E-06 5.3E-11 81.0 20.8 272 75-388 1-306 (365)
114 COG0763 LpxB Lipid A disacchar 98.7 2.3E-06 4.9E-11 78.8 18.9 269 75-388 2-289 (381)
115 COG3914 Spy Predicted O-linked 98.7 1.2E-06 2.7E-11 83.7 17.7 270 71-388 256-537 (620)
116 TIGR03492 conserved hypothetic 98.6 4.9E-06 1.1E-10 79.8 20.2 194 150-392 93-325 (396)
117 COG1519 KdtA 3-deoxy-D-manno-o 98.6 1.5E-05 3.3E-10 74.2 20.5 263 88-388 60-348 (419)
118 PRK01021 lpxB lipid-A-disaccha 98.5 2.6E-05 5.7E-10 76.7 21.0 256 75-388 227-513 (608)
119 TIGR00661 MJ1255 conserved hyp 98.5 4.6E-05 1E-09 71.1 21.9 50 338-393 228-278 (321)
120 PF13844 Glyco_transf_41: Glyc 98.4 1.8E-06 3.8E-11 82.8 10.6 115 260-390 275-392 (468)
121 COG0381 WecB UDP-N-acetylgluco 98.3 0.00032 6.8E-09 65.1 22.1 274 72-390 1-308 (383)
122 COG3980 spsG Spore coat polysa 98.3 0.00034 7.3E-09 61.7 20.0 244 75-385 1-249 (318)
123 COG4671 Predicted glycosyl tra 98.2 0.00014 3.1E-09 65.9 17.6 108 268-393 218-325 (400)
124 PF13477 Glyco_trans_4_2: Glyc 98.2 1.5E-05 3.3E-10 64.5 10.4 94 76-187 1-109 (139)
125 TIGR01426 MGT glycosyltransfer 98.1 0.00038 8.3E-09 66.9 19.9 49 337-392 273-321 (392)
126 PF04464 Glyphos_transf: CDP-G 98.0 0.00036 7.7E-09 66.6 17.6 265 73-388 12-294 (369)
127 PF07429 Glyco_transf_56: 4-al 98.0 0.0039 8.5E-08 57.0 22.1 112 268-390 183-297 (360)
128 PRK14089 ipid-A-disaccharide s 97.8 0.00085 1.8E-08 62.8 15.4 247 75-388 2-260 (347)
129 PF02350 Epimerase_2: UDP-N-ac 97.8 0.00081 1.8E-08 63.3 14.3 210 145-393 62-288 (346)
130 COG1817 Uncharacterized protei 97.8 0.0084 1.8E-07 53.8 19.5 237 91-391 14-280 (346)
131 PF08323 Glyco_transf_5: Starc 97.7 0.00016 3.4E-09 64.7 8.7 39 76-114 1-43 (245)
132 PRK02797 4-alpha-L-fucosyltran 97.6 0.0044 9.6E-08 55.9 16.1 111 268-389 144-257 (322)
133 PRK10017 colanic acid biosynth 97.5 0.074 1.6E-06 51.4 23.5 287 75-389 1-353 (426)
134 COG1819 Glycosyl transferases, 96.9 0.032 7E-07 53.7 14.9 93 269-391 237-329 (406)
135 PF06258 Mito_fiss_Elm1: Mitoc 96.8 0.4 8.8E-06 44.3 21.2 249 88-392 2-259 (311)
136 KOG3742 Glycogen synthase [Car 96.8 0.016 3.4E-07 54.5 10.9 43 348-392 492-534 (692)
137 COG0859 RfaF ADP-heptose:LPS h 96.8 0.29 6.2E-06 45.9 19.8 101 269-392 175-280 (334)
138 PF13524 Glyco_trans_1_2: Glyc 96.7 0.0012 2.7E-08 49.1 2.7 33 359-393 1-33 (92)
139 PF04101 Glyco_tran_28_C: Glyc 96.5 0.0051 1.1E-07 51.4 5.3 48 339-392 55-102 (167)
140 TIGR03609 S_layer_CsaB polysac 96.4 0.81 1.8E-05 42.1 21.8 87 285-389 190-276 (298)
141 TIGR02195 heptsyl_trn_II lipop 96.1 0.097 2.1E-06 49.1 12.1 111 257-389 161-277 (334)
142 PRK10422 lipopolysaccharide co 95.7 0.14 3.1E-06 48.3 11.8 107 264-390 179-289 (352)
143 PF05159 Capsule_synth: Capsul 95.7 0.19 4.1E-06 45.6 11.9 104 268-389 115-225 (269)
144 cd03789 GT1_LPS_heptosyltransf 95.6 0.13 2.8E-06 46.9 10.7 101 271-392 123-227 (279)
145 PRK10916 ADP-heptose:LPS hepto 95.4 0.24 5.2E-06 46.7 12.1 109 259-388 169-286 (348)
146 PF00343 Phosphorylase: Carboh 95.4 0.61 1.3E-05 47.5 15.1 130 260-391 432-577 (713)
147 TIGR02201 heptsyl_trn_III lipo 95.2 0.4 8.6E-06 45.2 12.9 107 263-389 176-286 (344)
148 COG0058 GlgP Glucan phosphoryl 95.1 0.28 6.2E-06 50.0 11.8 125 266-392 483-612 (750)
149 PF01075 Glyco_transf_9: Glyco 95.0 0.14 3.1E-06 45.6 8.8 103 267-388 103-208 (247)
150 KOG4626 O-linked N-acetylgluco 94.8 0.84 1.8E-05 45.2 13.5 162 201-388 698-864 (966)
151 COG4641 Uncharacterized protei 94.7 0.21 4.7E-06 46.4 9.0 259 87-392 14-297 (373)
152 TIGR02093 P_ylase glycogen/sta 94.6 0.27 5.8E-06 50.6 10.3 130 260-391 515-660 (794)
153 TIGR02193 heptsyl_trn_I lipopo 94.6 0.41 9E-06 44.5 10.9 99 268-389 178-280 (319)
154 PRK14986 glycogen phosphorylas 94.5 0.5 1.1E-05 48.9 12.0 131 260-392 531-677 (815)
155 PRK10964 ADP-heptose:LPS hepto 94.4 0.44 9.4E-06 44.4 10.8 101 268-391 177-281 (322)
156 cd04300 GT1_Glycogen_Phosphory 94.3 0.63 1.4E-05 48.2 12.0 130 260-391 518-663 (797)
157 PF12000 Glyco_trans_4_3: Gkyc 93.9 0.35 7.6E-06 40.3 7.8 36 202-244 135-170 (171)
158 PF15024 Glyco_transf_18: Glyc 93.6 1.9 4.1E-05 42.6 13.4 93 275-393 282-375 (559)
159 COG3660 Predicted nucleoside-d 93.1 6 0.00013 35.2 22.0 119 257-392 150-275 (329)
160 PRK14985 maltodextrin phosphor 93.0 0.5 1.1E-05 48.7 8.9 130 260-391 517-662 (798)
161 PHA03392 egt ecdysteroid UDP-g 93.0 0.65 1.4E-05 46.2 9.5 93 268-392 295-394 (507)
162 PF12038 DUF3524: Domain of un 92.8 1.4 2.9E-05 36.3 9.4 129 75-224 1-141 (168)
163 KOG1050 Trehalose-6-phosphate 92.8 1.1 2.4E-05 46.1 11.0 155 231-393 240-411 (732)
164 PF06925 MGDG_synth: Monogalac 92.2 0.36 7.8E-06 40.3 5.7 79 144-236 83-166 (169)
165 KOG3349 Predicted glycosyltran 92.0 2.9 6.4E-05 33.7 10.1 100 270-388 4-106 (170)
166 PF04230 PS_pyruv_trans: Polys 91.8 8.9 0.00019 34.1 18.4 45 339-390 237-284 (286)
167 COG2327 WcaK Polysaccharide py 91.5 13 0.00028 35.3 17.9 73 307-389 237-311 (385)
168 PF10087 DUF2325: Uncharacteri 90.9 0.78 1.7E-05 34.3 5.8 75 311-393 2-86 (97)
169 PLN02448 UDP-glycosyltransfera 90.4 2.2 4.8E-05 42.0 10.0 97 268-392 273-371 (459)
170 PF11440 AGT: DNA alpha-glucos 90.0 14 0.0003 33.2 16.2 269 88-386 2-308 (355)
171 PF01975 SurE: Survival protei 89.8 1.3 2.8E-05 38.0 6.9 38 75-115 1-38 (196)
172 PF08288 PIGA: PIGA (GPI ancho 89.5 0.8 1.7E-05 33.2 4.4 46 142-189 42-87 (90)
173 PRK09739 hypothetical protein; 89.0 0.96 2.1E-05 38.9 5.6 40 72-111 1-41 (199)
174 PF03853 YjeF_N: YjeF-related 88.3 1.7 3.8E-05 36.2 6.5 79 75-156 26-105 (169)
175 PF03033 Glyco_transf_28: Glyc 88.3 1.3 2.8E-05 35.3 5.6 46 87-142 9-54 (139)
176 PLN03007 UDP-glucosyltransfera 88.0 3.7 8E-05 40.7 9.7 48 339-391 345-392 (482)
177 PLN02863 UDP-glucoronosyl/UDP- 87.4 4.5 9.8E-05 39.9 9.8 37 75-113 10-46 (477)
178 PF04413 Glycos_transf_N: 3-De 86.5 8.7 0.00019 32.6 9.9 136 88-237 32-179 (186)
179 cd03146 GAT1_Peptidase_E Type 85.9 8 0.00017 33.6 9.6 85 307-391 30-123 (212)
180 PF00201 UDPGT: UDP-glucoronos 83.3 13 0.00029 36.8 11.2 106 259-392 265-371 (500)
181 PF01113 DapB_N: Dihydrodipico 83.2 3.2 6.9E-05 32.6 5.4 43 348-392 59-101 (124)
182 PLN03004 UDP-glycosyltransfera 82.7 11 0.00023 37.0 9.9 48 339-391 334-381 (451)
183 PF10093 DUF2331: Uncharacteri 82.1 47 0.001 31.5 16.6 105 255-386 166-286 (374)
184 cd03129 GAT1_Peptidase_E_like 81.3 16 0.00034 31.6 9.6 85 307-391 28-123 (210)
185 PLN02534 UDP-glycosyltransfera 80.2 17 0.00036 36.1 10.3 48 339-391 344-391 (491)
186 PLN02167 UDP-glycosyltransfera 79.4 16 0.00035 36.1 10.0 46 339-391 340-387 (475)
187 PRK05380 pyrG CTP synthetase; 79.1 73 0.0016 31.8 22.5 168 202-391 203-381 (533)
188 TIGR01278 DPOR_BchB light-inde 78.9 61 0.0013 32.4 14.0 76 308-388 158-239 (511)
189 PF02844 GARS_N: Phosphoribosy 78.3 5.2 0.00011 30.1 4.7 87 75-176 1-90 (100)
190 TIGR00337 PyrG CTP synthase. C 77.4 81 0.0018 31.5 20.0 167 202-391 204-381 (525)
191 COG2984 ABC-type uncharacteriz 76.6 15 0.00032 33.8 7.9 95 285-391 145-248 (322)
192 PLN02555 limonoid glucosyltran 75.9 28 0.0006 34.5 10.4 47 338-391 336-384 (480)
193 PRK06719 precorrin-2 dehydroge 75.5 13 0.00028 30.5 6.9 33 73-112 12-44 (157)
194 PLN02554 UDP-glycosyltransfera 75.4 21 0.00044 35.4 9.5 47 339-392 342-390 (481)
195 PRK05583 ribosomal protein L7A 75.3 20 0.00044 27.1 7.3 78 284-379 21-98 (104)
196 PLN02562 UDP-glycosyltransfera 75.3 27 0.0006 34.2 10.2 49 339-392 328-376 (448)
197 PLN02670 transferase, transfer 75.2 26 0.00056 34.6 10.0 46 341-391 341-386 (472)
198 PRK05282 (alpha)-aspartyl dipe 75.0 49 0.0011 29.2 10.7 82 309-392 32-123 (233)
199 TIGR00853 pts-lac PTS system, 73.9 4.9 0.00011 29.9 3.6 75 310-389 6-82 (95)
200 PF03358 FMN_red: NADPH-depend 73.5 9.1 0.0002 31.0 5.6 39 75-113 1-40 (152)
201 cd05565 PTS_IIB_lactose PTS_II 73.4 9.8 0.00021 28.6 5.1 75 311-389 4-79 (99)
202 PRK04175 rpl7ae 50S ribosomal 73.2 20 0.00043 28.1 7.0 80 283-379 33-113 (122)
203 PRK06988 putative formyltransf 73.0 15 0.00032 34.1 7.3 78 74-158 2-85 (312)
204 PRK07714 hypothetical protein; 72.9 25 0.00053 26.4 7.3 78 283-378 21-98 (100)
205 PRK14106 murD UDP-N-acetylmura 72.5 30 0.00065 33.8 9.9 90 72-174 3-94 (450)
206 PF03016 Exostosin: Exostosin 72.5 3.3 7.2E-05 37.9 3.0 40 348-389 228-268 (302)
207 PLN02173 UDP-glucosyl transfer 72.5 22 0.00047 34.9 8.7 48 339-391 317-364 (449)
208 KOG0780 Signal recognition par 72.2 18 0.00039 34.2 7.5 80 76-159 103-192 (483)
209 PF00185 OTCace: Aspartate/orn 72.2 25 0.00054 28.9 7.8 78 270-365 2-82 (158)
210 PLN02207 UDP-glycosyltransfera 72.0 30 0.00065 34.1 9.5 49 339-392 332-380 (468)
211 PLN00414 glycosyltransferase f 71.3 37 0.0008 33.3 10.0 37 75-113 5-41 (446)
212 PLN02210 UDP-glucosyl transfer 71.1 27 0.00058 34.4 9.0 37 75-113 9-47 (456)
213 PLN02410 UDP-glucoronosyl/UDP- 70.0 47 0.001 32.6 10.4 46 339-391 324-371 (451)
214 PRK00207 sulfur transfer compl 68.8 13 0.00028 29.4 5.2 37 75-111 1-39 (128)
215 PF08660 Alg14: Oligosaccharid 68.8 22 0.00048 29.6 6.8 31 85-115 6-38 (170)
216 PRK13398 3-deoxy-7-phosphohept 68.5 92 0.002 28.1 12.5 108 272-392 28-144 (266)
217 COG0496 SurE Predicted acid ph 68.4 18 0.00038 32.2 6.3 37 75-115 1-37 (252)
218 COG0062 Uncharacterized conser 68.3 31 0.00067 29.7 7.7 39 74-115 49-87 (203)
219 TIGR01470 cysG_Nterm siroheme 68.1 41 0.0009 29.0 8.6 85 73-173 8-95 (205)
220 PRK10494 hypothetical protein; 67.8 49 0.0011 29.8 9.3 95 286-391 107-210 (259)
221 PRK00048 dihydrodipicolinate r 67.5 21 0.00046 32.0 7.0 42 348-391 52-93 (257)
222 TIGR02069 cyanophycinase cyano 67.5 92 0.002 27.8 11.1 85 307-392 27-126 (250)
223 PLN02992 coniferyl-alcohol glu 67.3 31 0.00067 34.2 8.6 48 340-392 339-386 (481)
224 PRK13396 3-deoxy-7-phosphohept 67.1 1.1E+02 0.0023 29.0 11.5 112 268-393 98-219 (352)
225 TIGR02026 BchE magnesium-proto 66.9 21 0.00046 35.5 7.5 36 76-111 1-44 (497)
226 PF00070 Pyr_redox: Pyridine n 66.7 24 0.00053 24.9 5.9 54 90-143 8-64 (80)
227 PLN02208 glycosyltransferase f 66.3 47 0.001 32.5 9.6 37 75-113 5-41 (442)
228 cd05564 PTS_IIB_chitobiose_lic 66.2 12 0.00027 27.8 4.4 74 311-389 3-78 (96)
229 PLN02764 glycosyltransferase f 66.1 44 0.00096 32.8 9.3 37 75-113 6-42 (453)
230 PF02302 PTS_IIB: PTS system, 66.0 13 0.00028 26.9 4.5 54 311-365 3-56 (90)
231 PF00185 OTCace: Aspartate/orn 65.5 25 0.00054 28.9 6.5 36 74-114 2-37 (158)
232 PF04127 DFP: DNA / pantothena 65.4 55 0.0012 27.7 8.7 58 91-160 30-92 (185)
233 PLN02327 CTP synthase 65.0 1.6E+02 0.0035 29.7 21.4 170 202-391 210-400 (557)
234 PF01408 GFO_IDH_MocA: Oxidore 64.8 60 0.0013 24.7 8.9 70 307-391 24-95 (120)
235 PLN02152 indole-3-acetate beta 64.5 44 0.00095 32.8 9.0 48 339-391 327-374 (455)
236 PRK05647 purN phosphoribosylgl 64.3 23 0.0005 30.4 6.3 73 75-158 2-88 (200)
237 PRK10834 vancomycin high tempe 64.0 89 0.0019 27.7 9.8 82 307-391 81-170 (239)
238 COG2949 SanA Uncharacterized m 63.9 64 0.0014 27.7 8.4 83 310-395 96-186 (235)
239 PRK01372 ddl D-alanine--D-alan 63.8 17 0.00038 33.3 5.9 42 72-113 2-45 (304)
240 PRK06849 hypothetical protein; 63.4 25 0.00053 33.7 7.0 35 73-113 3-37 (389)
241 COG1519 KdtA 3-deoxy-D-manno-o 63.1 1.3E+02 0.0028 29.0 11.3 113 257-389 31-153 (419)
242 COG0394 Wzb Protein-tyrosine-p 63.0 17 0.00037 29.2 4.9 82 74-159 2-85 (139)
243 PHA03392 egt ecdysteroid UDP-g 62.9 13 0.00028 37.1 5.1 37 76-113 22-58 (507)
244 PLN00164 glucosyltransferase; 62.5 57 0.0012 32.3 9.5 45 341-390 341-385 (480)
245 PRK13054 lipid kinase; Reviewe 62.1 22 0.00049 32.6 6.3 42 72-115 1-42 (300)
246 PRK07283 hypothetical protein; 62.0 36 0.00079 25.4 6.2 65 307-378 33-97 (98)
247 PF02441 Flavoprotein: Flavopr 61.3 18 0.00038 28.6 4.7 36 75-113 1-36 (129)
248 PRK08305 spoVFB dipicolinate s 61.1 21 0.00044 30.6 5.3 38 73-114 4-43 (196)
249 TIGR03677 rpl7ae 50S ribosomal 61.0 52 0.0011 25.5 7.1 79 283-378 29-108 (117)
250 KOG0832 Mitochondrial/chloropl 61.0 55 0.0012 28.5 7.7 95 269-387 107-201 (251)
251 PF10649 DUF2478: Protein of u 60.9 15 0.00033 30.2 4.3 39 350-388 86-129 (159)
252 cd01080 NAD_bind_m-THF_DH_Cycl 60.5 29 0.00062 28.9 6.0 52 307-365 43-96 (168)
253 PF14118 YfzA: YfzA-like prote 60.1 15 0.00031 27.0 3.5 30 1-34 1-30 (94)
254 COG1887 TagB Putative glycosyl 60.1 1.7E+02 0.0036 28.2 12.6 141 224-389 166-312 (388)
255 PF02951 GSH-S_N: Prokaryotic 60.0 18 0.00039 28.2 4.4 37 75-113 1-40 (119)
256 PRK13789 phosphoribosylamine-- 59.8 26 0.00056 34.1 6.5 87 74-175 4-95 (426)
257 PRK02261 methylaspartate mutas 59.6 56 0.0012 26.1 7.3 62 72-158 1-62 (137)
258 TIGR01007 eps_fam capsular exo 58.9 23 0.0005 30.3 5.5 38 75-112 17-54 (204)
259 COG2120 Uncharacterized protei 58.4 63 0.0014 28.6 8.2 40 71-112 7-46 (237)
260 TIGR00715 precor6x_red precorr 57.9 59 0.0013 29.2 7.9 85 75-175 1-95 (256)
261 COG0552 FtsY Signal recognitio 57.3 69 0.0015 29.8 8.2 80 76-159 141-230 (340)
262 TIGR00288 conserved hypothetic 57.0 85 0.0018 25.9 8.0 67 282-363 88-155 (160)
263 PRK06756 flavodoxin; Provision 56.5 26 0.00057 28.2 5.1 36 75-111 2-37 (148)
264 PRK13982 bifunctional SbtC-lik 56.1 43 0.00092 33.0 7.2 39 72-114 68-107 (475)
265 PRK14569 D-alanyl-alanine synt 55.9 24 0.00052 32.4 5.3 40 72-111 1-42 (296)
266 cd01972 Nitrogenase_VnfE_like 55.7 1.9E+02 0.0042 28.1 11.8 101 282-389 137-244 (426)
267 PRK01438 murD UDP-N-acetylmura 55.6 97 0.0021 30.6 9.9 88 73-174 15-104 (480)
268 COG0416 PlsX Fatty acid/phosph 55.4 28 0.00061 32.2 5.4 37 75-112 2-39 (338)
269 TIGR01361 DAHP_synth_Bsub phos 55.3 1.3E+02 0.0029 27.0 9.8 110 274-393 28-143 (260)
270 PRK11780 isoprenoid biosynthes 55.3 29 0.00062 30.3 5.4 40 75-114 2-43 (217)
271 COG0036 Rpe Pentose-5-phosphat 55.1 78 0.0017 27.6 7.8 74 283-373 71-146 (220)
272 PRK11914 diacylglycerol kinase 54.9 36 0.00078 31.3 6.3 45 70-114 4-49 (306)
273 KOG1192 UDP-glucuronosyl and U 54.8 53 0.0012 32.4 8.0 36 75-113 7-42 (496)
274 PLN03015 UDP-glucosyl transfer 54.6 97 0.0021 30.6 9.4 46 341-391 337-382 (470)
275 PF00448 SRP54: SRP54-type pro 54.1 1.3E+02 0.0029 25.6 9.2 80 76-159 3-92 (196)
276 PF00885 DMRL_synthase: 6,7-di 54.0 46 0.001 26.9 6.0 43 72-114 1-46 (144)
277 PRK08591 acetyl-CoA carboxylas 53.8 57 0.0012 31.9 7.9 33 74-113 2-34 (451)
278 PRK00170 azoreductase; Reviewe 53.8 30 0.00065 29.5 5.3 37 75-111 2-42 (201)
279 TIGR01768 GGGP-family geranylg 53.5 34 0.00073 30.0 5.4 55 307-365 26-80 (223)
280 TIGR01658 EYA-cons_domain eyes 53.0 42 0.00091 29.7 5.8 55 289-358 216-270 (274)
281 COG2894 MinD Septum formation 52.9 60 0.0013 28.4 6.6 38 76-113 3-40 (272)
282 PRK14573 bifunctional D-alanyl 52.6 83 0.0018 33.5 9.3 88 71-175 1-90 (809)
283 TIGR00460 fmt methionyl-tRNA f 52.6 59 0.0013 30.2 7.3 77 75-158 1-86 (313)
284 PRK07313 phosphopantothenoylcy 52.4 33 0.00072 28.9 5.2 35 75-113 2-37 (182)
285 COG0482 TrmU Predicted tRNA(5- 52.2 1E+02 0.0022 29.1 8.6 97 72-174 1-118 (356)
286 PRK06395 phosphoribosylamine-- 52.0 49 0.0011 32.3 7.0 32 73-111 1-32 (435)
287 TIGR00064 ftsY signal recognit 51.7 1.6E+02 0.0036 26.6 9.9 81 76-159 73-163 (272)
288 PF01820 Dala_Dala_lig_N: D-al 51.7 50 0.0011 25.5 5.7 42 75-116 1-44 (117)
289 PRK04284 ornithine carbamoyltr 51.0 82 0.0018 29.5 8.0 79 73-158 154-232 (332)
290 cd05212 NAD_bind_m-THF_DH_Cycl 50.9 1.3E+02 0.0028 24.2 9.4 72 305-386 25-97 (140)
291 PRK10310 PTS system galactitol 50.7 21 0.00046 26.4 3.3 55 310-365 5-59 (94)
292 PRK02910 light-independent pro 50.5 2.8E+02 0.006 27.9 14.7 76 308-388 158-239 (519)
293 COG0151 PurD Phosphoribosylami 50.4 2E+02 0.0043 27.8 10.3 86 75-175 1-90 (428)
294 COG0541 Ffh Signal recognition 50.3 1E+02 0.0022 29.9 8.4 80 76-159 102-191 (451)
295 PRK01906 tetraacyldisaccharide 50.1 77 0.0017 29.8 7.6 36 77-113 58-95 (338)
296 COG4635 HemG Flavodoxin [Energ 50.1 30 0.00065 28.4 4.2 36 75-111 1-36 (175)
297 COG0078 ArgF Ornithine carbamo 50.0 1.2E+02 0.0027 27.8 8.5 81 73-161 152-232 (310)
298 PRK05579 bifunctional phosphop 49.9 34 0.00074 32.9 5.4 41 71-114 3-43 (399)
299 PRK07178 pyruvate carboxylase 49.5 71 0.0015 31.6 7.8 33 74-113 2-34 (472)
300 PRK09271 flavodoxin; Provision 49.5 39 0.00085 27.7 5.1 36 75-111 1-36 (160)
301 cd01971 Nitrogenase_VnfN_like 49.2 2.6E+02 0.0056 27.2 14.8 100 281-389 131-238 (427)
302 PRK13602 putative ribosomal pr 49.0 96 0.0021 22.2 6.4 54 284-353 15-68 (82)
303 PRK08125 bifunctional UDP-gluc 48.7 60 0.0013 33.6 7.4 76 75-158 1-83 (660)
304 PRK14805 ornithine carbamoyltr 48.7 89 0.0019 28.8 7.7 77 73-158 146-222 (302)
305 PRK05447 1-deoxy-D-xylulose 5- 48.7 1.5E+02 0.0032 28.4 9.3 96 268-389 25-122 (385)
306 COG4394 Uncharacterized protei 48.6 1.6E+02 0.0035 26.8 8.8 102 257-386 164-280 (370)
307 TIGR00514 accC acetyl-CoA carb 48.5 93 0.002 30.5 8.4 32 74-112 2-33 (449)
308 PRK05568 flavodoxin; Provision 48.4 45 0.00098 26.5 5.2 37 75-112 2-38 (142)
309 PRK00211 sulfur relay protein 48.2 45 0.00097 25.9 4.9 40 74-113 1-41 (119)
310 COG0673 MviM Predicted dehydro 48.1 1.5E+02 0.0033 27.4 9.6 58 324-389 39-98 (342)
311 PF06564 YhjQ: YhjQ protein; 48.1 39 0.00084 30.0 5.0 37 75-112 2-38 (243)
312 PRK00005 fmt methionyl-tRNA fo 47.9 77 0.0017 29.3 7.3 77 75-158 1-86 (309)
313 TIGR01761 thiaz-red thiazoliny 47.8 1.3E+02 0.0029 28.2 8.9 89 270-387 3-95 (343)
314 cd05312 NAD_bind_1_malic_enz N 47.7 1.9E+02 0.004 26.4 9.4 39 348-387 95-137 (279)
315 TIGR00639 PurN phosphoribosylg 47.6 94 0.002 26.4 7.2 73 75-158 1-87 (190)
316 PF00205 TPP_enzyme_M: Thiamin 47.4 31 0.00068 27.3 4.1 55 308-363 12-84 (137)
317 PRK09134 short chain dehydroge 47.4 79 0.0017 27.9 7.2 22 91-112 20-41 (258)
318 PRK13234 nifH nitrogenase redu 47.3 46 0.00099 30.5 5.7 27 85-111 11-39 (295)
319 PLN03050 pyridoxine (pyridoxam 47.1 41 0.00089 30.0 5.1 34 75-111 61-94 (246)
320 PRK12745 3-ketoacyl-(acyl-carr 46.9 90 0.002 27.4 7.5 33 76-113 3-35 (256)
321 PF02525 Flavodoxin_2: Flavodo 46.8 41 0.00089 28.6 5.0 37 75-111 1-40 (199)
322 PRK06703 flavodoxin; Provision 46.6 43 0.00094 27.0 4.9 36 75-111 2-37 (151)
323 PRK03515 ornithine carbamoyltr 46.5 1E+02 0.0022 28.9 7.9 80 73-159 155-234 (336)
324 PRK05562 precorrin-2 dehydroge 46.4 1.6E+02 0.0035 25.7 8.6 70 74-159 25-94 (223)
325 PF00862 Sucrose_synth: Sucros 46.4 1.5E+02 0.0033 29.4 9.0 96 87-187 295-434 (550)
326 TIGR00670 asp_carb_tr aspartat 46.4 1.7E+02 0.0038 26.9 9.2 86 259-365 140-225 (301)
327 COG2910 Putative NADH-flavin r 46.2 32 0.00069 29.1 3.9 34 75-114 1-34 (211)
328 COG0569 TrkA K+ transport syst 45.9 98 0.0021 27.1 7.3 81 88-176 7-96 (225)
329 PRK01713 ornithine carbamoyltr 45.7 1.1E+02 0.0023 28.8 7.8 79 73-158 155-233 (334)
330 TIGR00853 pts-lac PTS system, 45.7 61 0.0013 24.0 5.1 40 72-113 1-40 (95)
331 PRK05920 aromatic acid decarbo 45.6 49 0.0011 28.5 5.2 37 74-114 3-40 (204)
332 PRK01966 ddl D-alanyl-alanine 45.5 37 0.0008 31.7 4.9 42 72-113 1-44 (333)
333 PRK10569 NAD(P)H-dependent FMN 45.5 57 0.0012 27.8 5.6 37 75-111 1-38 (191)
334 PRK13181 hisH imidazole glycer 45.4 69 0.0015 27.3 6.2 60 324-391 11-81 (199)
335 PRK07200 aspartate/ornithine c 45.4 1.6E+02 0.0035 28.3 9.1 84 74-159 187-271 (395)
336 PF09949 DUF2183: Uncharacteri 45.2 47 0.001 25.0 4.4 28 306-336 62-89 (100)
337 PRK12825 fabG 3-ketoacyl-(acyl 45.0 65 0.0014 28.0 6.2 36 72-113 4-39 (249)
338 PF01488 Shikimate_DH: Shikima 44.8 1.2E+02 0.0026 23.9 7.2 77 72-162 10-87 (135)
339 cd01981 Pchlide_reductase_B Pc 44.6 3.1E+02 0.0066 26.7 15.1 75 309-388 163-243 (430)
340 PLN02166 dTDP-glucose 4,6-dehy 44.5 1.4E+02 0.0031 29.1 8.9 33 74-112 120-152 (436)
341 PF14597 Lactamase_B_5: Metall 44.4 58 0.0013 27.5 5.1 45 282-334 154-198 (199)
342 TIGR01425 SRP54_euk signal rec 44.4 1.5E+02 0.0032 28.9 8.8 80 76-159 102-191 (429)
343 COG0512 PabA Anthranilate/para 44.3 42 0.00091 28.5 4.4 33 75-113 2-34 (191)
344 PF13614 AAA_31: AAA domain; P 43.9 63 0.0014 25.9 5.6 36 77-113 3-38 (157)
345 PRK13932 stationary phase surv 43.6 41 0.00088 30.2 4.5 38 74-115 5-42 (257)
346 TIGR01544 HAD-SF-IE haloacid d 43.4 2.2E+02 0.0048 25.9 9.2 61 307-377 210-275 (277)
347 PRK02102 ornithine carbamoyltr 43.3 1.5E+02 0.0032 27.8 8.3 78 73-157 154-231 (331)
348 PLN02863 UDP-glucoronosyl/UDP- 43.3 1.8E+02 0.004 28.8 9.5 100 75-176 283-385 (477)
349 PRK02645 ppnK inorganic polyph 43.0 46 0.00099 30.8 5.0 39 72-111 1-39 (305)
350 PRK13302 putative L-aspartate 42.9 1.1E+02 0.0025 27.6 7.5 71 307-391 30-100 (271)
351 PF03949 Malic_M: Malic enzyme 42.7 1.7E+02 0.0037 26.2 8.2 78 307-387 24-138 (255)
352 TIGR01769 GGGP geranylgeranylg 42.6 1E+02 0.0022 26.6 6.6 73 279-365 5-78 (205)
353 cd03145 GAT1_cyanophycinase Ty 42.4 2.3E+02 0.005 24.6 9.8 84 307-391 28-126 (217)
354 cd01828 sialate_O-acetylestera 42.3 1.8E+02 0.004 23.5 9.1 48 268-318 48-97 (169)
355 PRK06718 precorrin-2 dehydroge 41.9 54 0.0012 28.2 5.0 35 72-113 8-42 (202)
356 PRK02255 putrescine carbamoylt 41.8 1.7E+02 0.0036 27.6 8.5 78 73-158 153-230 (338)
357 PRK03767 NAD(P)H:quinone oxido 41.8 55 0.0012 28.0 5.0 37 75-112 2-39 (200)
358 PF13241 NAD_binding_7: Putati 41.8 50 0.0011 24.8 4.2 78 73-173 6-86 (103)
359 PRK13601 putative L7Ae-like ri 41.5 1.3E+02 0.0029 21.6 6.3 55 284-354 12-66 (82)
360 COG3414 SgaB Phosphotransferas 41.5 30 0.00064 25.6 2.8 55 310-365 4-58 (93)
361 PRK04169 geranylgeranylglycery 41.3 1E+02 0.0022 27.2 6.6 55 307-365 31-85 (232)
362 PF02670 DXP_reductoisom: 1-de 41.3 1.8E+02 0.0039 23.0 8.5 95 268-387 22-119 (129)
363 PF12146 Hydrolase_4: Putative 41.3 86 0.0019 22.2 5.2 38 75-114 16-53 (79)
364 PRK00421 murC UDP-N-acetylmura 41.2 1.8E+02 0.0039 28.5 9.2 86 73-175 6-93 (461)
365 COG1692 Calcineurin-like phosp 41.2 2.2E+02 0.0048 25.3 8.4 85 272-366 2-91 (266)
366 PRK03094 hypothetical protein; 41.1 16 0.00036 26.0 1.3 24 88-111 5-28 (80)
367 PF02606 LpxK: Tetraacyldisacc 41.1 1.2E+02 0.0026 28.4 7.4 36 77-113 37-74 (326)
368 COG1763 MobB Molybdopterin-gua 41.1 72 0.0016 26.4 5.3 36 76-112 3-38 (161)
369 PF01531 Glyco_transf_11: Glyc 41.0 1.2E+02 0.0026 27.9 7.4 63 285-364 190-255 (298)
370 PRK06029 3-octaprenyl-4-hydrox 40.9 60 0.0013 27.5 4.9 36 75-114 2-39 (185)
371 PF13788 DUF4180: Domain of un 40.8 72 0.0016 24.6 4.9 42 307-350 68-109 (113)
372 PRK10499 PTS system N,N'-diace 40.8 71 0.0015 24.2 4.9 38 72-111 1-38 (106)
373 PF02254 TrkA_N: TrkA-N domain 40.7 79 0.0017 23.9 5.4 62 88-158 5-70 (116)
374 PRK10481 hypothetical protein; 40.5 1.8E+02 0.0039 25.5 7.9 90 280-390 114-214 (224)
375 PRK12562 ornithine carbamoyltr 40.4 1.5E+02 0.0032 27.8 7.9 79 74-159 156-234 (334)
376 PRK11889 flhF flagellar biosyn 40.2 2E+02 0.0043 27.9 8.7 81 75-159 242-329 (436)
377 cd01841 NnaC_like NnaC (CMP-Ne 40.1 2E+02 0.0044 23.4 10.2 48 268-318 51-100 (174)
378 KOG2585 Uncharacterized conser 40.0 66 0.0014 31.0 5.4 38 75-115 267-304 (453)
379 PRK06522 2-dehydropantoate 2-r 39.9 97 0.0021 28.2 6.7 32 75-113 1-32 (304)
380 PRK05993 short chain dehydroge 39.8 51 0.0011 29.7 4.8 33 75-112 4-36 (277)
381 PF04273 DUF442: Putative phos 39.6 1.7E+02 0.0037 22.3 7.3 67 93-159 16-96 (110)
382 PF02635 DrsE: DsrE/DsrF-like 39.6 92 0.002 23.5 5.7 39 75-113 1-43 (122)
383 TIGR03316 ygeW probable carbam 39.5 2.1E+02 0.0046 27.1 8.8 84 74-159 170-254 (357)
384 PRK13982 bifunctional SbtC-lik 39.5 1.7E+02 0.0036 29.0 8.3 79 72-162 254-346 (475)
385 PRK13556 azoreductase; Provisi 39.4 69 0.0015 27.5 5.3 37 75-111 2-43 (208)
386 COG4088 Predicted nucleotide k 39.4 36 0.00079 29.4 3.3 33 80-112 5-37 (261)
387 KOG1838 Alpha/beta hydrolase [ 39.2 64 0.0014 31.0 5.3 39 76-114 126-164 (409)
388 PRK00141 murD UDP-N-acetylmura 39.2 2.1E+02 0.0046 28.2 9.3 87 71-174 12-100 (473)
389 TIGR03029 EpsG chain length de 39.1 74 0.0016 28.6 5.7 38 75-112 103-140 (274)
390 PLN00016 RNA-binding protein; 39.1 39 0.00085 32.1 4.1 37 75-113 53-89 (378)
391 COG0062 Uncharacterized conser 39.0 2.5E+02 0.0055 24.2 12.1 116 258-391 38-160 (203)
392 COG3453 Uncharacterized protei 38.9 69 0.0015 24.9 4.4 82 76-159 2-97 (130)
393 PRK08462 biotin carboxylase; V 38.9 1.3E+02 0.0029 29.3 7.8 33 74-113 4-36 (445)
394 PLN03007 UDP-glucosyltransfera 38.7 62 0.0013 32.1 5.5 37 75-113 6-42 (482)
395 COG0716 FldA Flavodoxins [Ener 38.7 60 0.0013 26.3 4.6 37 74-111 1-37 (151)
396 KOG2648 Diphthamide biosynthes 38.6 1E+02 0.0022 29.9 6.5 78 307-384 266-353 (453)
397 PRK06483 dihydromonapterin red 38.6 1.6E+02 0.0036 25.3 7.8 27 87-113 9-35 (236)
398 TIGR00658 orni_carb_tr ornithi 38.6 1.9E+02 0.004 26.7 8.2 77 73-157 147-223 (304)
399 PLN02657 3,8-divinyl protochlo 38.6 2.2E+02 0.0048 27.2 9.2 37 71-113 57-93 (390)
400 cd00762 NAD_bind_malic_enz NAD 38.6 2.4E+02 0.0052 25.3 8.5 39 348-387 96-138 (254)
401 cd01831 Endoglucanase_E_like E 38.5 2.2E+02 0.0047 23.2 9.1 74 270-347 57-138 (169)
402 PF04413 Glycos_transf_N: 3-De 38.4 52 0.0011 27.9 4.2 100 270-389 22-125 (186)
403 PF04392 ABC_sub_bind: ABC tra 38.4 71 0.0015 29.1 5.6 66 324-389 148-218 (294)
404 KOG3339 Predicted glycosyltran 38.3 2.5E+02 0.0054 23.8 11.2 29 76-108 40-68 (211)
405 KOG1021 Acetylglucosaminyltran 38.1 1.1E+02 0.0024 30.1 7.1 41 348-390 335-376 (464)
406 COG0771 MurD UDP-N-acetylmuram 37.8 2.5E+02 0.0054 27.6 9.2 89 74-176 7-97 (448)
407 TIGR01319 glmL_fam conserved h 37.7 2E+02 0.0043 28.3 8.4 121 256-395 109-261 (463)
408 PRK05569 flavodoxin; Provision 37.3 83 0.0018 24.9 5.2 36 75-111 2-37 (141)
409 PF13460 NAD_binding_10: NADH( 37.3 1.3E+02 0.0028 24.8 6.6 62 87-159 5-69 (183)
410 cd01836 FeeA_FeeB_like SGNH_hy 37.2 1.8E+02 0.0039 24.2 7.5 45 269-316 68-114 (191)
411 COG1648 CysG Siroheme synthase 37.2 1.6E+02 0.0035 25.5 7.1 85 73-173 11-98 (210)
412 PRK12833 acetyl-CoA carboxylas 37.2 1.8E+02 0.0038 28.8 8.4 32 74-112 5-36 (467)
413 COG0223 Fmt Methionyl-tRNA for 37.2 1.4E+02 0.0031 27.5 7.1 77 75-158 2-87 (307)
414 CHL00175 minD septum-site dete 37.1 81 0.0017 28.5 5.6 36 76-111 16-51 (281)
415 PF07172 GRP: Glycine rich pro 37.1 35 0.00075 25.4 2.6 13 16-28 4-16 (95)
416 PRK06463 fabG 3-ketoacyl-(acyl 37.0 1.7E+02 0.0037 25.6 7.7 22 91-112 18-39 (255)
417 PF12273 RCR: Chitin synthesis 36.8 25 0.00055 27.8 2.0 11 16-26 1-11 (130)
418 PRK14494 putative molybdopteri 36.7 80 0.0017 27.8 5.2 35 76-111 2-36 (229)
419 PRK13376 pyrB bifunctional asp 36.5 4.3E+02 0.0094 26.6 10.7 102 235-359 143-244 (525)
420 PRK01355 azoreductase; Reviewe 36.4 93 0.002 26.5 5.6 37 75-111 2-43 (199)
421 KOG3022 Predicted ATPase, nucl 36.2 1.6E+02 0.0036 26.7 7.0 39 75-113 47-85 (300)
422 PRK10037 cell division protein 36.2 71 0.0015 28.3 5.0 26 86-111 10-37 (250)
423 PRK07308 flavodoxin; Validated 36.1 75 0.0016 25.4 4.7 27 85-111 11-37 (146)
424 cd01965 Nitrogenase_MoFe_beta_ 36.0 4.2E+02 0.009 25.7 17.5 99 282-389 132-252 (428)
425 PRK13600 putative ribosomal pr 36.0 1.4E+02 0.0029 21.7 5.4 54 282-351 15-68 (84)
426 TIGR02113 coaC_strep phosphopa 36.0 83 0.0018 26.4 5.1 23 91-113 14-36 (177)
427 PRK00652 lpxK tetraacyldisacch 35.9 2.2E+02 0.0049 26.5 8.3 30 84-113 57-88 (325)
428 TIGR01426 MGT glycosyltransfer 35.8 2.6E+02 0.0057 26.5 9.3 91 75-176 225-315 (392)
429 COG1646 Predicted phosphate-bi 35.7 1.7E+02 0.0038 25.7 6.9 74 276-365 19-95 (240)
430 COG1663 LpxK Tetraacyldisaccha 35.6 1.8E+02 0.0038 27.3 7.4 36 77-113 49-86 (336)
431 PRK06947 glucose-1-dehydrogena 35.6 1.3E+02 0.0029 26.2 6.7 23 91-113 13-35 (248)
432 KOG1185 Thiamine pyrophosphate 35.3 1.2E+02 0.0025 29.9 6.3 70 282-363 201-283 (571)
433 COG1832 Predicted CoA-binding 35.2 85 0.0018 25.1 4.5 37 74-113 16-52 (140)
434 cd00027 BRCT Breast Cancer Sup 35.0 1.3E+02 0.0028 19.6 5.6 64 309-389 2-65 (72)
435 PF09152 DUF1937: Domain of un 35.0 50 0.0011 25.5 3.2 37 351-387 74-113 (116)
436 PRK05282 (alpha)-aspartyl dipe 35.0 3.2E+02 0.0069 24.1 10.2 48 125-172 53-101 (233)
437 PRK06027 purU formyltetrahydro 34.9 1.3E+02 0.0029 27.5 6.6 73 73-158 88-173 (286)
438 PRK10867 signal recognition pa 34.7 3.1E+02 0.0066 26.8 9.3 82 76-160 101-193 (433)
439 PRK04523 N-acetylornithine car 34.6 2.8E+02 0.0062 26.0 8.8 66 91-158 186-252 (335)
440 PF15201 Rod_cone_degen: Progr 34.4 32 0.00069 21.5 1.6 17 21-37 2-18 (54)
441 PF03447 NAD_binding_3: Homose 34.4 47 0.001 25.4 3.2 43 348-392 49-93 (117)
442 PRK01710 murD UDP-N-acetylmura 34.4 3.4E+02 0.0073 26.7 9.8 88 74-174 14-103 (458)
443 PF03205 MobB: Molybdopterin g 34.1 1.1E+02 0.0024 24.4 5.4 36 76-113 2-37 (140)
444 PRK01713 ornithine carbamoyltr 33.9 4E+02 0.0087 25.0 10.1 88 259-364 145-233 (334)
445 PRK09590 celB cellobiose phosp 33.9 85 0.0018 23.8 4.3 35 75-111 2-36 (104)
446 TIGR03371 cellulose_yhjQ cellu 33.8 81 0.0018 27.6 5.0 38 76-113 2-39 (246)
447 COG0429 Predicted hydrolase of 33.8 71 0.0015 29.7 4.5 37 77-113 77-113 (345)
448 TIGR00087 surE 5'/3'-nucleotid 33.8 73 0.0016 28.4 4.6 36 75-115 1-37 (244)
449 TIGR00670 asp_carb_tr aspartat 33.7 2.2E+02 0.0048 26.2 7.9 74 73-157 149-223 (301)
450 PLN03049 pyridoxine (pyridoxam 33.7 71 0.0015 31.5 4.9 37 75-114 60-96 (462)
451 PRK09273 hypothetical protein; 33.6 62 0.0014 27.9 3.9 38 75-112 1-38 (211)
452 TIGR03012 sulf_tusD_dsrE sulfu 33.6 1E+02 0.0022 24.2 4.9 35 77-111 2-38 (127)
453 PRK05749 3-deoxy-D-manno-octul 33.6 2.9E+02 0.0063 26.6 9.2 101 269-389 50-154 (425)
454 PRK06179 short chain dehydroge 33.6 72 0.0016 28.4 4.7 24 90-113 14-37 (270)
455 COG1618 Predicted nucleotide k 33.5 2.8E+02 0.0062 23.1 9.2 35 75-111 6-40 (179)
456 PLN00414 glycosyltransferase f 33.5 4.2E+02 0.009 26.0 10.2 102 73-176 250-354 (446)
457 PRK12862 malic enzyme; Reviewe 33.4 2.4E+02 0.0051 29.9 8.8 74 306-387 191-289 (763)
458 COG4327 Predicted membrane pro 33.3 42 0.00091 24.5 2.4 24 16-39 19-43 (101)
459 PF03698 UPF0180: Uncharacteri 33.3 25 0.00055 25.2 1.3 23 90-112 7-29 (80)
460 TIGR01012 Sa_S2_E_A ribosomal 33.3 1.9E+02 0.0042 24.7 6.8 92 282-388 43-137 (196)
461 PRK13230 nitrogenase reductase 33.3 79 0.0017 28.6 4.9 33 75-111 2-36 (279)
462 PRK06111 acetyl-CoA carboxylas 33.2 2.3E+02 0.0049 27.7 8.5 33 74-113 2-34 (450)
463 cd05566 PTS_IIB_galactitol PTS 33.2 94 0.002 22.3 4.5 54 311-365 4-57 (89)
464 PLN03129 NADP-dependent malic 33.1 2.9E+02 0.0062 28.1 8.9 38 349-387 392-433 (581)
465 PRK00771 signal recognition pa 33.1 2.5E+02 0.0054 27.5 8.5 80 76-159 97-184 (437)
466 TIGR01754 flav_RNR ribonucleot 33.0 92 0.002 24.7 4.8 35 75-110 1-35 (140)
467 COG2085 Predicted dinucleotide 33.0 1.8E+02 0.0039 25.2 6.5 62 91-162 11-72 (211)
468 PF11238 DUF3039: Protein of u 33.0 35 0.00076 22.6 1.8 16 373-388 15-30 (58)
469 PF13407 Peripla_BP_4: Peripla 32.9 3.3E+02 0.0071 23.7 9.9 33 357-391 56-89 (257)
470 TIGR03018 pepcterm_TyrKin exop 32.7 1.2E+02 0.0026 26.0 5.8 38 76-113 36-74 (207)
471 PRK12743 oxidoreductase; Provi 32.6 1.6E+02 0.0034 26.0 6.7 25 88-112 10-34 (256)
472 PF10740 DUF2529: Protein of u 32.5 1.2E+02 0.0025 25.4 5.1 33 75-111 83-115 (172)
473 TIGR02622 CDP_4_6_dhtase CDP-g 32.4 88 0.0019 29.2 5.3 34 73-112 3-36 (349)
474 PRK09288 purT phosphoribosylgl 32.3 1.2E+02 0.0027 28.9 6.3 35 73-114 11-45 (395)
475 PRK06114 short chain dehydroge 32.3 2.2E+02 0.0048 24.9 7.7 33 76-113 9-41 (254)
476 PRK07236 hypothetical protein; 32.2 69 0.0015 30.5 4.6 34 72-112 4-37 (386)
477 PRK06180 short chain dehydroge 32.1 77 0.0017 28.4 4.7 23 90-112 14-36 (277)
478 TIGR02014 BchZ chlorophyllide 32.1 87 0.0019 30.9 5.2 77 308-391 152-232 (468)
479 COG4081 Uncharacterized protei 32.0 1.1E+02 0.0025 24.0 4.7 23 91-113 19-41 (148)
480 COG0373 HemA Glutamyl-tRNA red 31.7 3.8E+02 0.0082 26.0 9.2 74 309-394 203-277 (414)
481 PRK12595 bifunctional 3-deoxy- 31.7 4.6E+02 0.0099 24.9 11.7 105 275-394 122-237 (360)
482 cd02071 MM_CoA_mut_B12_BD meth 31.6 2.4E+02 0.0053 21.7 8.8 12 232-243 28-39 (122)
483 CHL00076 chlB photochlorophyll 31.4 5.5E+02 0.012 25.7 18.6 76 308-388 163-244 (513)
484 PLN03209 translocon at the inn 31.3 83 0.0018 31.9 4.9 39 68-112 74-112 (576)
485 PRK03659 glutathione-regulated 31.2 1.6E+02 0.0035 30.2 7.2 61 90-159 409-473 (601)
486 cd02040 NifH NifH gene encodes 31.2 1E+02 0.0023 27.4 5.3 33 75-111 2-36 (270)
487 PRK14568 vanB D-alanine--D-lac 31.1 79 0.0017 29.7 4.6 42 72-113 1-44 (343)
488 PF05368 NmrA: NmrA-like famil 31.0 2.8E+02 0.0062 23.9 8.0 82 87-175 5-97 (233)
489 PRK12937 short chain dehydroge 31.0 1.1E+02 0.0024 26.5 5.4 26 87-112 12-37 (245)
490 COG0300 DltE Short-chain dehyd 30.9 72 0.0016 28.8 4.1 22 92-113 18-39 (265)
491 PRK07200 aspartate/ornithine c 30.9 4.7E+02 0.01 25.2 9.7 90 258-364 173-270 (395)
492 PLN02572 UDP-sulfoquinovose sy 30.9 1.2E+02 0.0027 29.6 6.1 33 73-111 46-78 (442)
493 PRK06182 short chain dehydroge 30.7 1.9E+02 0.0041 25.7 7.0 22 91-112 14-35 (273)
494 PF00201 UDPGT: UDP-glucoronos 30.6 21 0.00045 35.4 0.7 26 87-112 10-35 (500)
495 PRK14491 putative bifunctional 30.6 1.2E+02 0.0025 31.1 6.0 37 75-112 10-46 (597)
496 PF00148 Oxidored_nitro: Nitro 30.2 4.9E+02 0.011 24.8 13.4 117 258-388 98-222 (398)
497 COG3563 KpsC Capsule polysacch 30.1 2E+02 0.0043 28.3 6.9 55 334-396 203-258 (671)
498 COG1553 DsrE Uncharacterized c 30.0 1.7E+02 0.0036 23.0 5.3 37 75-111 1-39 (126)
499 COG0489 Mrp ATPases involved i 29.9 1.2E+02 0.0026 27.3 5.5 40 74-113 56-95 (265)
500 PRK13849 putative crown gall t 29.9 1.2E+02 0.0025 26.7 5.2 36 76-113 2-39 (231)
No 1
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.9e-34 Score=275.39 Aligned_cols=290 Identities=15% Similarity=0.155 Sum_probs=209.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch-----------h
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-----------E 143 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 143 (396)
.+|+++.+....||+++++.+++++|.+.||++.+++..+.. .+...+...++.++..... .
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 74 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-------AFRKRIQRPDVAFYALHKQPGKDVAVYPQLY 74 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-------hhHHHHHhcCceEEEeCCCCCCChHHHHHHH
Confidence 489999999999999999999999999999999988843221 1444455556666544321 2
Q ss_pred hhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCc-hh----hh-c-cccccccceeeccccHHH
Q 016053 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK-LD----YV-K-HLPLVAGAMIDSHVTAEY 216 (396)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~-~~----~~-~-~~~~~~~~~~~s~~~~~~ 216 (396)
.+.+..+||+||+|+.........+...+++ ..+++.|........ .. +. + ..+..+.+++.|....++
T Consensus 75 ~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~----~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~ 150 (374)
T TIGR03088 75 RLLRQLRPDIVHTRNLAALEAQLPAALAGVP----ARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDW 150 (374)
T ss_pred HHHHHhCCCEEEEcchhHHHHHHHHHhcCCC----eEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHH
Confidence 2345689999999986443222223333333 123333432111111 01 11 1 123456677777766655
Q ss_pred HHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHH
Q 016053 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (396)
Q Consensus 217 ~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~ 296 (396)
+.+ .++++.+++.+||||+|.+.|.+.... +...++.....++.++|+++||+.+.||++.+++|+.++.
T Consensus 151 ~~~----~~~~~~~~~~vi~ngvd~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 220 (374)
T TIGR03088 151 LRG----PVKVPPAKIHQIYNGVDTERFHPSRGD------RSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLV 220 (374)
T ss_pred HHH----hcCCChhhEEEeccCccccccCCCccc------hhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHH
Confidence 443 567777889999999999887543211 1223333444577899999999999999999999999987
Q ss_pred HHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHH
Q 016053 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (396)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~l 376 (396)
++.++ ..++++|+++|+|+ ..+.+++.++++++++++.|.|..+|+.++|++||++|+||. .|+||++++
T Consensus 221 ~~~~~---~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~--~Eg~~~~~l 290 (374)
T TIGR03088 221 RQLPE---GAERLRLVIVGDGP-----ARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSL--AEGISNTIL 290 (374)
T ss_pred HhCcc---cccceEEEEecCCc-----hHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccc--cccCchHHH
Confidence 64432 12479999999986 668899999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCCCEEEcCCCCCCC
Q 016053 377 EAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 377 EAma~G~PVI~t~~gG~~~ 395 (396)
|||+||+|||+|+.||.++
T Consensus 291 EAma~G~Pvv~s~~~g~~e 309 (374)
T TIGR03088 291 EAMASGLPVIATAVGGNPE 309 (374)
T ss_pred HHHHcCCCEEEcCCCCcHH
Confidence 9999999999999999764
No 2
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.7e-34 Score=277.71 Aligned_cols=275 Identities=17% Similarity=0.104 Sum_probs=202.1
Q ss_pred EEEEEeccCCC--CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcC-------------
Q 016053 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (396)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 140 (396)
||+++++...+ ||.++++.+++++|.++||+|+|++...+.. ........++.+...+
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~-------~~~~~~~~~i~v~~~p~~~~~~~~~~~~~ 73 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNR-------VGIRYLTNGLKVYYLPFVVFYNQSTLPTF 73 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcC-------CCcccccCceeEEEecceeccCCccccch
Confidence 68999886444 8889999999999999999999999543211 0001112233332221
Q ss_pred -----chhhhhhccCCcEEEEcCchhhHHHH---HHHhcCCCccccceeeeeeeccccc------Cchhhhccccccccc
Q 016053 141 -----GQETINTALKADLIVLNTAVAGKWLD---AVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGA 206 (396)
Q Consensus 141 -----~~~~~~~~~~~DiV~~~~~~~~~~~~---~~~~~~~~~~~~~vv~~~h~~~~~~------~~~~~~~~~~~~~~~ 206 (396)
..+......+||+||+|++....... .+...+ .+++++.|+..+.. ........++..+.+
T Consensus 74 ~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~-----~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~i 148 (398)
T cd03796 74 FGTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMG-----LKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHV 148 (398)
T ss_pred hhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcC-----CcEEEEecccccccchhhHHhhHHHHHhhccCCEE
Confidence 11233345799999999865433211 122233 45788888753211 011112234677888
Q ss_pred eeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHH
Q 016053 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (396)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~ 286 (396)
++.|....+.+.. ..+++.+++.+||||+|.+.|.+.... .++++++|+++|++.+.||++
T Consensus 149 i~~s~~~~~~~~~----~~~~~~~k~~vi~ngvd~~~f~~~~~~---------------~~~~~~~i~~~grl~~~Kg~~ 209 (398)
T cd03796 149 ICVSHTSKENTVL----RASLDPERVSVIPNAVDSSDFTPDPSK---------------RDNDKITIVVISRLVYRKGID 209 (398)
T ss_pred EEecHhHhhHHHH----HhCCChhhEEEEcCccCHHHcCCCccc---------------CCCCceEEEEEeccchhcCHH
Confidence 8888776654322 345677889999999999887643210 235778999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecC
Q 016053 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (396)
Q Consensus 287 ~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (396)
.+++|++++.+ +.++++|+|+|+|+ ..+.++++++++++.++|+|+|.+ +++.++|++||++++||
T Consensus 210 ~li~a~~~l~~-------~~~~~~l~i~G~g~-----~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS 277 (398)
T cd03796 210 LLVGIIPEICK-------KHPNVRFIIGGDGP-----KRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTS 277 (398)
T ss_pred HHHHHHHHHHh-------hCCCEEEEEEeCCc-----hHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCC
Confidence 99999998765 34899999999986 678899999999999999999986 78999999999999999
Q ss_pred CCCCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 365 QAWGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 365 ~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
. .|+||++++||||||+|||+|+.||.++
T Consensus 278 ~--~E~~g~~~~EAma~G~PVI~s~~gg~~e 306 (398)
T cd03796 278 L--TEAFCIAIVEAASCGLLVVSTRVGGIPE 306 (398)
T ss_pred h--hhccCHHHHHHHHcCCCEEECCCCCchh
Confidence 9 9999999999999999999999999764
No 3
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=3.5e-33 Score=264.66 Aligned_cols=283 Identities=18% Similarity=0.224 Sum_probs=208.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc-----------hhh
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-----------QET 144 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 144 (396)
||+++++....||+++++.+++++|.+.||+|++++...... .........++.++.... ...
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG------DYDDEIEKLGGKIYYIPARKKNPLKYFKKLYK 74 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCc------chHHHHHHcCCeEEEecCCCccHHHHHHHHHH
Confidence 689999888889999999999999999999999999654321 122233334555543221 112
Q ss_pred hhhccCCcEEEEcCchhhHHHHHHHh-cCCCccccceeeeeeeccccc--Cchh------hhccccccccceeeccccHH
Q 016053 145 INTALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEMRGHY--FKLD------YVKHLPLVAGAMIDSHVTAE 215 (396)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~vv~~~h~~~~~~--~~~~------~~~~~~~~~~~~~~s~~~~~ 215 (396)
+....+||+||+|............+ .+. +..+.+.|...... .... ........+.+++.+....+
T Consensus 75 ~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~ 150 (358)
T cd03812 75 LIKKNKYDIVHVHGSSASGFILLAAKKAGV----KVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGK 150 (358)
T ss_pred HHhcCCCCEEEEeCcchhHHHHHHHhhCCC----CeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHH
Confidence 23458999999998654333232222 232 23456666643111 1111 11223456777777776666
Q ss_pred HHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHH
Q 016053 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (396)
Q Consensus 216 ~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l 295 (396)
.+.+ . ....++.+||||+|.+.+.+.+.. ++. ++..+..++++.|+++|++.+.||++.+++|+..+
T Consensus 151 ~~~~----~--~~~~~~~vi~ngvd~~~~~~~~~~------~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l 217 (358)
T cd03812 151 WLFG----K--VKNKKFKVIPNGIDLEKFIFNEEI------RKK-RRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAEL 217 (358)
T ss_pred HHHh----C--CCcccEEEEeccCcHHHcCCCchh------hhH-HHHcCCCCCCEEEEEEeccccccChHHHHHHHHHH
Confidence 5443 2 356789999999999877654211 122 56677778899999999999999999999999998
Q ss_pred HHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHH
Q 016053 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (396)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~ 375 (396)
.+ ++++++++|+|+|+ ..+.+++.++++++.++|+|+|+.+++.++|+.||++|+||. .|+||+++
T Consensus 218 ~~-------~~~~~~l~ivG~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~E~~~~~~ 283 (358)
T cd03812 218 LK-------KNPNAKLLLVGDGE-----LEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSL--YEGLPLVL 283 (358)
T ss_pred HH-------hCCCeEEEEEeCCc-----hHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEeccc--ccCCCHHH
Confidence 76 34899999999986 678888999999999999999999999999999999999999 99999999
Q ss_pred HHHHhcCCCEEEcCCCCCCC
Q 016053 376 IEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 376 lEAma~G~PVI~t~~gG~~~ 395 (396)
+||||+|+|||+|+.||.+.
T Consensus 284 lEAma~G~PvI~s~~~~~~~ 303 (358)
T cd03812 284 IEAQASGLPCILSDTITKEV 303 (358)
T ss_pred HHHHHhCCCEEEEcCCchhh
Confidence 99999999999999999753
No 4
>PLN02316 synthase/transferase
Probab=100.00 E-value=4.5e-33 Score=283.63 Aligned_cols=303 Identities=17% Similarity=0.144 Sum_probs=213.6
Q ss_pred cccEEEEEeccCCC----CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhh--h------------hhhcce
Q 016053 73 KSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH--K------------MWDRGV 134 (396)
Q Consensus 73 ~~~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~--~------------~~~~~~ 134 (396)
.+|+|+||+.+..+ ||..-++..|.++|++.||+|.|+++............+.. . ....|+
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV 665 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGL 665 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEEEECCc
Confidence 34799999977433 88889999999999999999999997543211000000000 0 011234
Q ss_pred EEEEcCch----------------h-----------hhh-hccCCcEEEEcCchhhHHHHHHHhcC--CCccccceeeee
Q 016053 135 QVISAKGQ----------------E-----------TIN-TALKADLIVLNTAVAGKWLDAVLKED--VPRVLPNVLWWI 184 (396)
Q Consensus 135 ~~~~~~~~----------------~-----------~~~-~~~~~DiV~~~~~~~~~~~~~~~~~~--~~~~~~~vv~~~ 184 (396)
.++.+... . .+. ...+|||||+|+..++.....+.... ......++++++
T Consensus 666 ~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~p~V~Ti 745 (1036)
T PLN02316 666 SVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKARVVFTI 745 (1036)
T ss_pred EEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCCCEEEEe
Confidence 43322111 0 000 12589999999976555433333210 011235789999
Q ss_pred eecccccCchhhhccccccccceeeccccHHHHHHHHHhhhccc--CCCEEEEecCCccchhhhhhhh------------
Q 016053 185 HEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIK--MPDTYVVHLGNSKELMEVAEDN------------ 250 (396)
Q Consensus 185 h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~--~~k~~vI~ngid~~~~~~~~~~------------ 250 (396)
|+.. +........+..++.++++|...+..+.. ...+. ..|+.+|+||||.+.|.|..+.
T Consensus 746 Hnl~--~~~n~lk~~l~~AD~ViTVS~tya~EI~~----~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~ 819 (1036)
T PLN02316 746 HNLE--FGANHIGKAMAYADKATTVSPTYSREVSG----NSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVV 819 (1036)
T ss_pred CCcc--cchhHHHHHHHHCCEEEeCCHHHHHHHHh----ccCcccccCCEEEEECCccccccCCcccccccccCCchhhh
Confidence 9762 21112334556889999999887766553 22232 4789999999999987664321
Q ss_pred HHHHHhHHHHHHHcCCCC-CCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHH
Q 016053 251 VAKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR 329 (396)
Q Consensus 251 ~~~~~~~~~~r~~~g~~~-~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~ 329 (396)
..+...+..+++++|++. +.++|+++||+.++||++.|++|+..+.+ .+++|+|+|+|++ ..+++.++
T Consensus 820 ~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~---------~~~qlVIvG~Gpd--~~~e~~l~ 888 (1036)
T PLN02316 820 EGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE---------RNGQVVLLGSAPD--PRIQNDFV 888 (1036)
T ss_pred hhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh---------cCcEEEEEeCCCC--HHHHHHHH
Confidence 112344667899999974 67999999999999999999999998764 5799999999863 24578899
Q ss_pred HHHHhcCC--CCcEEEecCcCCH--HHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 330 NYVMQKKI--QDRVHFVNKTLTV--APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 330 ~~~~~~~l--~~~V~~~g~~~~~--~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
++++++++ +++|.|.|..++. ..+|++||+||+||. .|+||++.+|||+||+|+|++++||..
T Consensus 889 ~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppVvs~vGGL~ 955 (1036)
T PLN02316 889 NLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPVVRKTGGLF 955 (1036)
T ss_pred HHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeEEEcCCCcH
Confidence 99998865 5789999876553 379999999999999 999999999999999999999999975
No 5
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=4.1e-33 Score=272.67 Aligned_cols=305 Identities=17% Similarity=0.154 Sum_probs=209.5
Q ss_pred cEEEEEeccCC----CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhh--hhhhh---------hhhhcceEEEEc
Q 016053 75 KLVLLVSHELS----LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI--YSLEH---------KMWDRGVQVISA 139 (396)
Q Consensus 75 ~kIl~v~~~~~----~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~ 139 (396)
|||++++.+.. .||...++..|+++|+++||+|.|+++..+.-..... ..... .....|++++.+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v 80 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLI 80 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEE
Confidence 58999997732 3888999999999999999999999965332110000 00000 001235555422
Q ss_pred Cchh--------------------------hhh-hccCCcEEEEcCchhhHHHHHHHhcC-CCccccceeeeeeecccc-
Q 016053 140 KGQE--------------------------TIN-TALKADLIVLNTAVAGKWLDAVLKED-VPRVLPNVLWWIHEMRGH- 190 (396)
Q Consensus 140 ~~~~--------------------------~~~-~~~~~DiV~~~~~~~~~~~~~~~~~~-~~~~~~~vv~~~h~~~~~- 190 (396)
.... .+. ...+||+||+|+..++.....+.... ......++++++|+....
T Consensus 81 ~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g 160 (466)
T PRK00654 81 DAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQG 160 (466)
T ss_pred eCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCC
Confidence 1100 000 11489999999977665544444221 111125689999986311
Q ss_pred cCc---------------hhh----------hccccccccceeeccccHHHHHHH-----HHhhhcccCCCEEEEecCCc
Q 016053 191 YFK---------------LDY----------VKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRIKMPDTYVVHLGNS 240 (396)
Q Consensus 191 ~~~---------------~~~----------~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~g~~~~k~~vI~ngid 240 (396)
.+. ... ...+..++.++++|...++.+.+. +...++....|+.+|+||+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid 240 (466)
T PRK00654 161 LFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGID 240 (466)
T ss_pred cCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCC
Confidence 010 000 012456788888888877665531 11122345678999999999
Q ss_pred cchhhhhhhh-----------HHHHHhHHHHHHHcCCCC-CCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 016053 241 KELMEVAEDN-----------VAKRVLREHVRESLGVRN-EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (396)
Q Consensus 241 ~~~~~~~~~~-----------~~~~~~~~~~r~~~g~~~-~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~ 308 (396)
.+.|.+..++ ..+...+..+++++|+++ +.++|+++||+.++||++.+++|++++.+ .+
T Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~---------~~ 311 (466)
T PRK00654 241 YDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLE---------QG 311 (466)
T ss_pred ccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHh---------cC
Confidence 9988764321 012334667899999975 67899999999999999999999998864 47
Q ss_pred EEEEEEecCCCccchHHHHHHHHHHhcCCCCcEE-EecCcCC-HHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEE
Q 016053 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH-FVNKTLT-VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (396)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~-~~g~~~~-~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI 386 (396)
++|+|+|+|. ..+.+.+++++++++ .++. +.|+.++ +..+|++||++|+||. .|+||++++|||+||+|+|
T Consensus 312 ~~lvivG~g~---~~~~~~l~~l~~~~~--~~v~~~~g~~~~~~~~~~~~aDv~v~PS~--~E~~gl~~lEAma~G~p~V 384 (466)
T PRK00654 312 GQLVLLGTGD---PELEEAFRALAARYP--GKVGVQIGYDEALAHRIYAGADMFLMPSR--FEPCGLTQLYALRYGTLPI 384 (466)
T ss_pred CEEEEEecCc---HHHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHhhCCEEEeCCC--CCCchHHHHHHHHCCCCEE
Confidence 9999999875 235678899998876 4565 4566544 5689999999999999 9999999999999999999
Q ss_pred EcCCCCCCC
Q 016053 387 VLSELHPSI 395 (396)
Q Consensus 387 ~t~~gG~~~ 395 (396)
++++||...
T Consensus 385 ~~~~gG~~e 393 (466)
T PRK00654 385 VRRTGGLAD 393 (466)
T ss_pred EeCCCCccc
Confidence 999999753
No 6
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=3.7e-33 Score=278.63 Aligned_cols=288 Identities=15% Similarity=0.151 Sum_probs=197.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCC--------------EEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGT--------------KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~--------------~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (396)
||+++.+....||+|+++.+|+.+|.+.++ +|.+++........ .+...+...|+++.....
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~----~~~~~L~~~Gv~v~~l~~ 358 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGAD----FFAATLADAGIPVSVYSD 358 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcc----hHHHHHHhCCCeEEEecc
Confidence 899999999999999999999999999854 45554321100000 133344445555533211
Q ss_pred h---------------------------------hhhhhccCCcEEEEcCchhhHHHHHHH-hcCCCccccceeeeeeec
Q 016053 142 Q---------------------------------ETINTALKADLIVLNTAVAGKWLDAVL-KEDVPRVLPNVLWWIHEM 187 (396)
Q Consensus 142 ~---------------------------------~~~~~~~~~DiV~~~~~~~~~~~~~~~-~~~~~~~~~~vv~~~h~~ 187 (396)
. ..+.+..+||+||+|...+..+...+. ..++|. ++.+.|..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPv----Iv~t~h~~ 434 (694)
T PRK15179 359 MQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPR----IVLSVRTM 434 (694)
T ss_pred CCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCE----EEEEeCCC
Confidence 1 123355799999999876654433332 233332 23344543
Q ss_pred ccccCchhh----h---ccccccccc--eeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHH
Q 016053 188 RGHYFKLDY----V---KHLPLVAGA--MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (396)
Q Consensus 188 ~~~~~~~~~----~---~~~~~~~~~--~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~ 258 (396)
........+ . ..+...+.. +++|.... +.+.+.++++.+++.|||||+|.+.|.+.+.... .+.
T Consensus 435 ~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~----~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~---~~~ 507 (694)
T PRK15179 435 PPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAA----HRYADWLGVDERRIPVVYNGLAPLKSVQDDACTA---MMA 507 (694)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHH----HHHHHHcCCChhHEEEECCCcCHHhcCCCchhhH---HHH
Confidence 221111111 1 111222322 33333333 3333356888889999999999887754221100 011
Q ss_pred HHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCC
Q 016053 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ 338 (396)
Q Consensus 259 ~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~ 338 (396)
.+ ....+++.++|+++||+.+.||++.+++|++++.+ +.++++|+|+|+|+ +.+.++++++++++.
T Consensus 508 ~~--~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~-------~~p~~~LvIvG~G~-----~~~~L~~l~~~lgL~ 573 (694)
T PRK15179 508 QF--DARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAA-------SHPKVRFIMVGGGP-----LLESVREFAQRLGMG 573 (694)
T ss_pred hh--ccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHH-------HCcCeEEEEEccCc-----chHHHHHHHHHcCCC
Confidence 11 12234567899999999999999999999998865 33899999999986 778999999999999
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
++|+|+|+++++..+|+++|++|+||. +|+||++++|||+||+|||+|++||..
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~ 627 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAG 627 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChH
Confidence 999999999999999999999999999 999999999999999999999999964
No 7
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=1.3e-32 Score=260.54 Aligned_cols=280 Identities=18% Similarity=0.196 Sum_probs=209.0
Q ss_pred ccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc--------------hhhhhh
Q 016053 82 HELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--------------QETINT 147 (396)
Q Consensus 82 ~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 147 (396)
+....||+++++.+++++|.++||+|.+++.... ....+...+++++.... ...+..
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAGGR---------LVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIR 75 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCCc---------hHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHH
Confidence 4456699999999999999999999999986443 12222333444433211 112234
Q ss_pred ccCCcEEEEcCchhhHHHHHH-HhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHHHHHhhhc
Q 016053 148 ALKADLIVLNTAVAGKWLDAV-LKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLR 226 (396)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~-~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g 226 (396)
..+||+||+|+.........+ ...+ .+++++.|+.... ...+...+...+.+++.|....+.+. +.++
T Consensus 76 ~~~~dii~~~~~~~~~~~~~~~~~~~-----~~~i~~~h~~~~~--~~~~~~~~~~~~~vi~~s~~~~~~~~----~~~~ 144 (355)
T cd03819 76 EEKVDIVHARSRAPAWSAYLAARRTR-----PPFVTTVHGFYSV--NFRYNAIMARGDRVIAVSNFIADHIR----ENYG 144 (355)
T ss_pred HcCCCEEEECCCchhHHHHHHHHhcC-----CCEEEEeCCchhh--HHHHHHHHHhcCEEEEeCHHHHHHHH----HhcC
Confidence 579999999985443322222 2222 5578888876321 11334455677888888877766654 3567
Q ss_pred ccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCC
Q 016053 227 IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEV 306 (396)
Q Consensus 227 ~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~ 306 (396)
++..++.+||||+|.+.|.+.... ......++++++.+++.++++++|++.+.||++.+++++..+.+ ++
T Consensus 145 ~~~~k~~~i~ngi~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~-------~~ 214 (355)
T cd03819 145 VDPDRIRVIPRGVDLDRFDPGAVP---PERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKK-------DD 214 (355)
T ss_pred CChhhEEEecCCccccccCccccc---hHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHh-------cC
Confidence 788899999999999887643221 11123368888888889999999999999999999999999875 23
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecC-CCCCCCccHHHHHHHhcCCCE
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS-QAWGECFGRITIEAMAFQLPV 385 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS-~~~~E~fg~~~lEAma~G~PV 385 (396)
++++++|+|.+...+ .+.+.+.+.++++++.++|+|+|+.+++.++|++||++++|| . .|+||++++||||||+||
T Consensus 215 ~~~~l~ivG~~~~~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~--~e~~~~~l~EA~a~G~Pv 291 (355)
T cd03819 215 PDVHLLIVGDAQGRR-FYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTE--PEAFGRTAVEAQAMGRPV 291 (355)
T ss_pred CCeEEEEEECCcccc-hHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCC--CCCCchHHHHHHhcCCCE
Confidence 789999999886432 356667788888899899999999999999999999999999 6 899999999999999999
Q ss_pred EEcCCCCCC
Q 016053 386 LVLSELHPS 394 (396)
Q Consensus 386 I~t~~gG~~ 394 (396)
|+++.||..
T Consensus 292 I~~~~~~~~ 300 (355)
T cd03819 292 IASDHGGAR 300 (355)
T ss_pred EEcCCCCcH
Confidence 999998865
No 8
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=2.5e-32 Score=266.61 Aligned_cols=305 Identities=17% Similarity=0.175 Sum_probs=210.3
Q ss_pred ccccEEEEEeccCCC----CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhh--h---hhhhhhh---------hhcc
Q 016053 72 MKSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV--I---YSLEHKM---------WDRG 133 (396)
Q Consensus 72 m~~~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~--~---~~~~~~~---------~~~~ 133 (396)
|++|||+|++++..+ ||-.-++..|.++|+++||+|.|+++.-..-.... . ..+.... ...|
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 567899999988444 88889999999999999999999997543211000 0 0000000 0113
Q ss_pred eEEEEcCch-----------------------h---------h----hhhccCCcEEEEcCchhhHHHHHHHhcCCCccc
Q 016053 134 VQVISAKGQ-----------------------E---------T----INTALKADLIVLNTAVAGKWLDAVLKEDVPRVL 177 (396)
Q Consensus 134 ~~~~~~~~~-----------------------~---------~----~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~ 177 (396)
+.++-+... + . .....+|||||+|+..++.....+..... ..
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~--~~ 158 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGR--PA 158 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCC--CC
Confidence 333211000 0 0 00125899999999776654443332211 12
Q ss_pred cceeeeeeecccc-cCch------------------h-------hhccccccccceeeccccHHHHHHHH-----Hhhhc
Q 016053 178 PNVLWWIHEMRGH-YFKL------------------D-------YVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLR 226 (396)
Q Consensus 178 ~~vv~~~h~~~~~-~~~~------------------~-------~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~g 226 (396)
.+.++++|+.... .+.. . ....+..++.++++|...++.+.+.. ...++
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~ 238 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLR 238 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHH
Confidence 5689999986311 0100 0 11223578888899988887765321 00112
Q ss_pred ccCCCEEEEecCCccchhhhhhhhH-----------HHHHhHHHHHHHcCCCC--CCEEEEEEecccCCCCHHHHHHHHH
Q 016053 227 IKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFY 293 (396)
Q Consensus 227 ~~~~k~~vI~ngid~~~~~~~~~~~-----------~~~~~~~~~r~~~g~~~--~~~~il~vG~l~~~Kg~~~li~a~~ 293 (396)
....++.+|+||+|.+.|.+..++. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.
T Consensus 239 ~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~ 318 (485)
T PRK14099 239 QRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALP 318 (485)
T ss_pred hhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHH
Confidence 3467899999999999887654321 12234567899999964 5688999999999999999999999
Q ss_pred HHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcE-EEecCcCCHHHHHH-HcCEEEecCCCCCCCc
Q 016053 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV-HFVNKTLTVAPYLA-AIDVLVQNSQAWGECF 371 (396)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V-~~~g~~~~~~~~~~-~aDv~v~pS~~~~E~f 371 (396)
.+.+ .+++|+|+|+|. ..+++.+++++++++ +++ .|+|+.+++..+|. .||++|+||. .|+|
T Consensus 319 ~l~~---------~~~~lvivG~G~---~~~~~~l~~l~~~~~--~~v~~~~G~~~~l~~~~~a~aDifv~PS~--~E~f 382 (485)
T PRK14099 319 TLLG---------EGAQLALLGSGD---AELEARFRAAAQAYP--GQIGVVIGYDEALAHLIQAGADALLVPSR--FEPC 382 (485)
T ss_pred HHHh---------cCcEEEEEecCC---HHHHHHHHHHHHHCC--CCEEEEeCCCHHHHHHHHhcCCEEEECCc--cCCC
Confidence 8764 479999999985 235778888888765 455 78999888999874 6999999999 9999
Q ss_pred cHHHHHHHhcCCCEEEcCCCCCC
Q 016053 372 GRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 372 g~~~lEAma~G~PVI~t~~gG~~ 394 (396)
|++.+|||+||+|+|++++||..
T Consensus 383 Gl~~lEAma~G~ppVvs~~GGl~ 405 (485)
T PRK14099 383 GLTQLCALRYGAVPVVARVGGLA 405 (485)
T ss_pred cHHHHHHHHCCCCcEEeCCCCcc
Confidence 99999999999988889999975
No 9
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.1e-32 Score=260.72 Aligned_cols=283 Identities=18% Similarity=0.164 Sum_probs=203.0
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEE--Ec-------------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SA------------- 139 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------- 139 (396)
|||+++++ ...||.++++.+++++|.++||+|++++...+..... ...++.+. ..
T Consensus 1 mki~~~~~-p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (371)
T cd04962 1 MKIGIVCY-PTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDE---------YSPNIFFHEVEVPQYPLFQYPPYDL 70 (371)
T ss_pred CceeEEEE-eCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhh---------hccCeEEEEecccccchhhcchhHH
Confidence 47888875 3459999999999999999999999998543311000 00111110 00
Q ss_pred ---CchhhhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc------Cchhhhccccccccceeec
Q 016053 140 ---KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDS 210 (396)
Q Consensus 140 ---~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s 210 (396)
.......+..+||+||+|.+...................+++++.|+..... +.......++.++.+++.|
T Consensus 71 ~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 150 (371)
T cd04962 71 ALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVS 150 (371)
T ss_pred HHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcC
Confidence 0111223457999999997543222221111101111255788888653111 1111223345778888888
Q ss_pred cccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHH
Q 016053 211 HVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (396)
Q Consensus 211 ~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~ 290 (396)
....+.+.+ .++ ...++.+||||+|...+.+.. ....+++++.++++++++++|++.+.||++.+++
T Consensus 151 ~~~~~~~~~----~~~-~~~~i~vi~n~~~~~~~~~~~--------~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~ 217 (371)
T cd04962 151 ESLRQETYE----LFD-ITKEIEVIPNFVDEDRFRPKP--------DEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIR 217 (371)
T ss_pred HHHHHHHHH----hcC-CcCCEEEecCCcCHhhcCCCc--------hHHHHHhcCCCCCCeEEEEecccccccCHHHHHH
Confidence 776665543 332 456799999999987765432 2335677888888999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCC
Q 016053 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGEC 370 (396)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~ 370 (396)
|+.++.+. .+++|+++|.|+ +.+.+++++++++++++|+|+|+++++.++|+.||++|+||. .|+
T Consensus 218 a~~~l~~~--------~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~--~E~ 282 (371)
T cd04962 218 IFAKVRKE--------VPARLLLVGDGP-----ERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSE--KES 282 (371)
T ss_pred HHHHHHhc--------CCceEEEEcCCc-----CHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCC--cCC
Confidence 99987542 478999999986 567888999999999999999999999999999999999999 999
Q ss_pred ccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 371 FGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 371 fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
||++++|||+||+|||+|+.||.+.
T Consensus 283 ~~~~~~EAma~g~PvI~s~~~~~~e 307 (371)
T cd04962 283 FGLAALEAMACGVPVVASNAGGIPE 307 (371)
T ss_pred CccHHHHHHHcCCCEEEeCCCCchh
Confidence 9999999999999999999998753
No 10
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=2.7e-32 Score=258.59 Aligned_cols=289 Identities=19% Similarity=0.182 Sum_probs=203.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEc--------Cchhhhhh
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--------KGQETINT 147 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 147 (396)
+||++++....||+++.+.+++++|.++||+|++++..+....... ........+..... .....+.+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPP----IDATIILNLNMSKNPLSFLLALWKLRKILR 76 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccch----hhccceEEecccccchhhHHHHHHHHHHHH
Confidence 4889988888899999999999999999999999984432211100 00000000000000 00123344
Q ss_pred ccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchh-hhccc-cccccceeeccccHHHHHHHHHhhh
Q 016053 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-YVKHL-PLVAGAMIDSHVTAEYWKNRTRERL 225 (396)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~-~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (396)
..+||+||+|......+...+... . ..++++.+.|+......... ..+.. ...+..+..+... .+.+.+..
T Consensus 77 ~~~pdiv~~~~~~~~~~~~l~~~~-~--~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~~~~~~ 149 (360)
T cd04951 77 QFKPDVVHAHMFHANIFARLLRLF-L--PSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEA----LDYFIASK 149 (360)
T ss_pred hcCCCEEEEcccchHHHHHHHHhh-C--CCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHH----HHHHHhcc
Confidence 579999999986554433333222 1 12567778887632110001 11111 1223333334333 33333344
Q ss_pred cccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccC
Q 016053 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLE 305 (396)
Q Consensus 226 g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~ 305 (396)
+++.+++.+||||+|.+.+.+... .....++++++++++++++++|++.+.||++.+++++.++.+ +
T Consensus 150 ~~~~~~~~~i~ng~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~-------~ 216 (360)
T cd04951 150 AFNANKSFVVYNGIDTDRFRKDPA------RRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLS-------D 216 (360)
T ss_pred CCCcccEEEEccccchhhcCcchH------HHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHh-------h
Confidence 466788999999999887754321 234578889998889999999999999999999999998865 3
Q ss_pred CCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCE
Q 016053 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (396)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PV 385 (396)
+++++|+|+|+|+ ..+++++.++++++.++|.|+|+++++.++|+.||++++||. .|+||++++|||++|+||
T Consensus 217 ~~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~G~Pv 289 (360)
T cd04951 217 YLDIKLLIAGDGP-----LRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMACELPV 289 (360)
T ss_pred CCCeEEEEEcCCC-----cHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEeccc--ccCCChHHHHHHHcCCCE
Confidence 3799999999986 667888999999998999999999999999999999999999 999999999999999999
Q ss_pred EEcCCCCCCC
Q 016053 386 LVLSELHPSI 395 (396)
Q Consensus 386 I~t~~gG~~~ 395 (396)
|+++.||...
T Consensus 290 I~~~~~~~~e 299 (360)
T cd04951 290 VATDAGGVRE 299 (360)
T ss_pred EEecCCChhh
Confidence 9999998753
No 11
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.3e-32 Score=272.61 Aligned_cols=307 Identities=15% Similarity=0.123 Sum_probs=215.5
Q ss_pred cccEEEEEeccCCC----CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhh-----------hhhh--------h
Q 016053 73 KSKLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS-----------LEHK--------M 129 (396)
Q Consensus 73 ~~~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~-----------~~~~--------~ 129 (396)
+.|+|+||+.+..+ ||-.-++..|.++|++.||+|.|+++....-....... +... .
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~ 559 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTG 559 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEEE
Confidence 44699999987443 88899999999999999999999997544221000000 0000 0
Q ss_pred hhcceEEEEcCc------h-------------h---------hhhh--ccCCcEEEEcCchhhHHHHHHHh----cCCCc
Q 016053 130 WDRGVQVISAKG------Q-------------E---------TINT--ALKADLIVLNTAVAGKWLDAVLK----EDVPR 175 (396)
Q Consensus 130 ~~~~~~~~~~~~------~-------------~---------~~~~--~~~~DiV~~~~~~~~~~~~~~~~----~~~~~ 175 (396)
...|+.++-+.. + + .+.. ..+|||||||+...+.....+.. .++
T Consensus 560 ~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~-- 637 (977)
T PLN02939 560 TVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGF-- 637 (977)
T ss_pred EECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccC--
Confidence 112444432210 0 0 0001 26899999999776654222221 122
Q ss_pred cccceeeeeeecc--cccCc---------hhhh------------------ccccccccceeeccccHHHHHHH----HH
Q 016053 176 VLPNVLWWIHEMR--GHYFK---------LDYV------------------KHLPLVAGAMIDSHVTAEYWKNR----TR 222 (396)
Q Consensus 176 ~~~~vv~~~h~~~--~~~~~---------~~~~------------------~~~~~~~~~~~~s~~~~~~~~~~----~~ 222 (396)
...++++++|+.. +.+.. ..+. ..+..++.++++|...++.+... +.
T Consensus 638 ~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~ 717 (977)
T PLN02939 638 NSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQ 717 (977)
T ss_pred CCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchH
Confidence 2357999999873 21100 0000 01125677888888877665541 11
Q ss_pred hhhcccCCCEEEEecCCccchhhhhhhh-----------HHHHHhHHHHHHHcCCCC---CCEEEEEEecccCCCCHHHH
Q 016053 223 ERLRIKMPDTYVVHLGNSKELMEVAEDN-----------VAKRVLREHVRESLGVRN---EDLLFAIINSVSRGKGQDLF 288 (396)
Q Consensus 223 ~~~g~~~~k~~vI~ngid~~~~~~~~~~-----------~~~~~~~~~~r~~~g~~~---~~~~il~vG~l~~~Kg~~~l 288 (396)
..++....++.+|+||||.+.|.|..++ ..+...+..+++++|+++ +.++|+++||+.++||++.+
T Consensus 718 ~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlL 797 (977)
T PLN02939 718 DTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLI 797 (977)
T ss_pred HHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHH
Confidence 1234567889999999999998875431 122344678999999974 46899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCC--HHHHHHHcCEEEecCCC
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLT--VAPYLAAIDVLVQNSQA 366 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~--~~~~~~~aDv~v~pS~~ 366 (396)
++|+..+.+ ++++|+|+|+|+.. .+.+.+++++.++++.++|.|+|..++ ...+|+.||+||+||.
T Consensus 798 leA~~~Ll~---------~dvqLVIvGdGp~~--~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr- 865 (977)
T PLN02939 798 RHAIYKTAE---------LGGQFVLLGSSPVP--HIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSM- 865 (977)
T ss_pred HHHHHHHhh---------cCCEEEEEeCCCcH--HHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCC-
Confidence 999988754 57899999998622 356788999999999899999998754 4689999999999999
Q ss_pred CCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 367 WGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 367 ~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
+|+||++++|||+||+|+|++++||..
T Consensus 866 -~EPfGLvqLEAMAyGtPPVVs~vGGL~ 892 (977)
T PLN02939 866 -FEPCGLTQMIAMRYGSVPIVRKTGGLN 892 (977)
T ss_pred -ccCCcHHHHHHHHCCCCEEEecCCCCc
Confidence 999999999999999999999999974
No 12
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=1.8e-32 Score=268.51 Aligned_cols=284 Identities=16% Similarity=0.104 Sum_probs=195.2
Q ss_pred ccccEEEEEeccC---CCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceE-----EEEc---C
Q 016053 72 MKSKLVLLVSHEL---SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ-----VISA---K 140 (396)
Q Consensus 72 m~~~kIl~v~~~~---~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~ 140 (396)
+++|||+++.... ..||++.++.+++++|.++||+|++++................ ....... .... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~-~~~~~~~~~~~~~~~~~~~~ 134 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIG-SWSFPCPFYQKVPLSLALSP 134 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeec-cCCcCCccCCCceeeccCCH
Confidence 6778999987532 3499999999999999999999999995433211000000000 0000000 0001 1
Q ss_pred chhhhhhccCCcEEEEcCchhhHHHH--HHHhcCCCccccceeeeeeecccccCch---------h---hhccccccccc
Q 016053 141 GQETINTALKADLIVLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRGHYFKL---------D---YVKHLPLVAGA 206 (396)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~~~~--~~~~~~~~~~~~~vv~~~h~~~~~~~~~---------~---~~~~~~~~~~~ 206 (396)
....+.+..+||+||+|++....+.. .+...++ |++.+.|+....+... . .....+..+.+
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~i-----p~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~i 209 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIMVFGALFYAKLLCV-----PLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLT 209 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCC-----CEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEE
Confidence 12234456899999999864333222 2233443 4666777642211110 0 11223466777
Q ss_pred eeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcC-CCCCCEEEEEEecccCCCCH
Q 016053 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG-VRNEDLLFAIINSVSRGKGQ 285 (396)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g-~~~~~~~il~vG~l~~~Kg~ 285 (396)
++.|....+.+.+ ....+.+++.+||||+|.+.|.+... ....++++. .++++++|+|+|++.+.||+
T Consensus 210 i~~S~~~~~~l~~----~~~~~~~kv~vi~nGvd~~~f~p~~~-------~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~ 278 (465)
T PLN02871 210 LVTSPALGKELEA----AGVTAANRIRVWNKGVDSESFHPRFR-------SEEMRARLSGGEPEKPLIVYVGRLGAEKNL 278 (465)
T ss_pred EECCHHHHHHHHH----cCCCCcCeEEEeCCccCccccCCccc-------cHHHHHHhcCCCCCCeEEEEeCCCchhhhH
Confidence 7777776665543 22234678999999999998865321 123455543 34577899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEec
Q 016053 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (396)
Q Consensus 286 ~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~p 363 (396)
+.++++++++ ++++|+|+|+|+ +.+++++++++ .+|+|+|++ +++..+|++||++|+|
T Consensus 279 ~~li~a~~~~-----------~~~~l~ivG~G~-----~~~~l~~~~~~----~~V~f~G~v~~~ev~~~~~~aDv~V~p 338 (465)
T PLN02871 279 DFLKRVMERL-----------PGARLAFVGDGP-----YREELEKMFAG----TPTVFTGMLQGDELSQAYASGDVFVMP 338 (465)
T ss_pred HHHHHHHHhC-----------CCcEEEEEeCCh-----HHHHHHHHhcc----CCeEEeccCCHHHHHHHHHHCCEEEEC
Confidence 9999998764 689999999986 77888888764 369999997 7899999999999999
Q ss_pred CCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 364 SQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 364 S~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
|. .|+||++++||||||+|||+|+.||..
T Consensus 339 S~--~E~~g~~vlEAmA~G~PVI~s~~gg~~ 367 (465)
T PLN02871 339 SE--SETLGFVVLEAMASGVPVVAARAGGIP 367 (465)
T ss_pred Cc--ccccCcHHHHHHHcCCCEEEcCCCCcH
Confidence 99 999999999999999999999999865
No 13
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.4e-32 Score=265.76 Aligned_cols=288 Identities=13% Similarity=0.044 Sum_probs=204.9
Q ss_pred cEEEEEeccCCC--CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhh----hhhhhhhhcceEEEEcCch------
Q 016053 75 KLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY----SLEHKMWDRGVQVISAKGQ------ 142 (396)
Q Consensus 75 ~kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------ 142 (396)
|||++++....+ ||++.++.+++++|.++||+|+|+|.....+...... .........|++++..+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 589999976433 8999999999999999999999999543211110000 0001112345666443210
Q ss_pred --hh--------------hhh--ccCCcEEEEcCchhh--HH-HHHHHhcCCCccccceeeeeeecccc------cCchh
Q 016053 143 --ET--------------INT--ALKADLIVLNTAVAG--KW-LDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLD 195 (396)
Q Consensus 143 --~~--------------~~~--~~~~DiV~~~~~~~~--~~-~~~~~~~~~~~~~~~vv~~~h~~~~~------~~~~~ 195 (396)
+. +.. ..+||+||+|.+... .. ...++..+. ++++++|+.... .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~-----~~v~~~~d~~~~~~~~~~~~~~~ 155 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGA-----RTWLHIQDYEVDAAFGLGLLKGG 155 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCC-----CEEEEeccCCHHHHHHhCCccCc
Confidence 00 111 268999999986432 11 122233343 466677764210 01110
Q ss_pred ---------hhccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCC
Q 016053 196 ---------YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGV 266 (396)
Q Consensus 196 ---------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~ 266 (396)
....++.++.+++.|....+.+. ..+.+..++.+||||+|.+.|.+... ..+..+++++++
T Consensus 156 ~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~-----~~~~~~~~i~vi~ngvd~~~~~~~~~-----~~~~~~~~~~~~ 225 (412)
T PRK10307 156 KVARLATAFERSLLRRFDNVSTISRSMMNKAR-----EKGVAAEKVIFFPNWSEVARFQPVAD-----ADVDALRAQLGL 225 (412)
T ss_pred HHHHHHHHHHHHHHhhCCEEEecCHHHHHHHH-----HcCCCcccEEEECCCcCHhhcCCCCc-----cchHHHHHHcCC
Confidence 11234567888888887777654 34667788999999999988765321 113457888999
Q ss_pred CCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC
Q 016053 267 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (396)
Q Consensus 267 ~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (396)
++++++|+|+|++.+.||++.+++|++.+. +.++++|+|+|+|+ .++++++++++++++ +|+|+|+
T Consensus 226 ~~~~~~i~~~G~l~~~kg~~~li~a~~~l~--------~~~~~~l~ivG~g~-----~~~~l~~~~~~~~l~-~v~f~G~ 291 (412)
T PRK10307 226 PDGKKIVLYSGNIGEKQGLELVIDAARRLR--------DRPDLIFVICGQGG-----GKARLEKMAQCRGLP-NVHFLPL 291 (412)
T ss_pred CCCCEEEEEcCccccccCHHHHHHHHHHhc--------cCCCeEEEEECCCh-----hHHHHHHHHHHcCCC-ceEEeCC
Confidence 888899999999999999999999998763 23789999999986 778899999999986 7999998
Q ss_pred c--CCHHHHHHHcCEEEecCCCCCCC----ccHHHHHHHhcCCCEEEcCCCCC
Q 016053 347 T--LTVAPYLAAIDVLVQNSQAWGEC----FGRITIEAMAFQLPVLVLSELHP 393 (396)
Q Consensus 347 ~--~~~~~~~~~aDv~v~pS~~~~E~----fg~~~lEAma~G~PVI~t~~gG~ 393 (396)
+ +++.++|++||++|+||. .|+ +|.+++||||||+|||+|+.||.
T Consensus 292 ~~~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi~s~~~g~ 342 (412)
T PRK10307 292 QPYDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVVATAEPGT 342 (412)
T ss_pred CCHHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEEEEeCCCc
Confidence 6 689999999999999999 888 57789999999999999998874
No 14
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=5.7e-32 Score=261.04 Aligned_cols=277 Identities=18% Similarity=0.158 Sum_probs=199.1
Q ss_pred CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc----------------------hh
Q 016053 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------------------QE 143 (396)
Q Consensus 86 ~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 143 (396)
.||+++++.+|+++|.++||+|+|++......... ......++.+..... .+
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPP------VVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLR 92 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC------ccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999543211100 001123444443210 00
Q ss_pred hhhh--ccCCcEEEEcCchhhHHHHHHHh-cCCCccccceeeeeeecccc---c------Cchh---h--hccccccccc
Q 016053 144 TINT--ALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEMRGH---Y------FKLD---Y--VKHLPLVAGA 206 (396)
Q Consensus 144 ~~~~--~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~vv~~~h~~~~~---~------~~~~---~--~~~~~~~~~~ 206 (396)
.+.+ ..++|+||+|....+.....+.+ .+ .|++++.|+.... + .... + ...+..++.+
T Consensus 93 ~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~-----~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~v 167 (405)
T TIGR03449 93 AEARHEPGYYDLIHSHYWLSGQVGWLLRDRWG-----VPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRL 167 (405)
T ss_pred HHhhccCCCCCeEEechHHHHHHHHHHHHhcC-----CCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeE
Confidence 1111 24799999998554433222222 23 3577888875210 0 0000 0 1234567777
Q ss_pred eeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHH
Q 016053 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (396)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~ 286 (396)
++.|....+.+.+ .++.+.+++.+||||+|.+.|.+.. +...++++++++++++|+++|++.+.||++
T Consensus 168 i~~s~~~~~~~~~----~~~~~~~ki~vi~ngvd~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~ 235 (405)
T TIGR03449 168 IANTDEEARDLVR----HYDADPDRIDVVAPGADLERFRPGD--------RATERARLGLPLDTKVVAFVGRIQPLKAPD 235 (405)
T ss_pred EECCHHHHHHHHH----HcCCChhhEEEECCCcCHHHcCCCc--------HHHHHHhcCCCCCCcEEEEecCCCcccCHH
Confidence 7777765554433 5677778899999999998875432 344677889888889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCC--EEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEe
Q 016053 287 LFLHSFYESLELIKEKKLEVPS--VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (396)
Q Consensus 287 ~li~a~~~l~~~~~~~~~~~~~--~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~ 362 (396)
.+++|++++.+. .++ ++|+|+|++.....++.++++++++++++.++|+|+|++ +++.++|+.||++++
T Consensus 236 ~li~a~~~l~~~-------~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ 308 (405)
T TIGR03449 236 VLLRAVAELLDR-------DPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAV 308 (405)
T ss_pred HHHHHHHHHHhh-------CCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEE
Confidence 999999998653 244 999999964321113678899999999999999999986 789999999999999
Q ss_pred cCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 363 NSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 363 pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
||. .|+||++++|||++|+|||+++.||..
T Consensus 309 ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~ 338 (405)
T TIGR03449 309 PSY--NESFGLVAMEAQACGTPVVAARVGGLP 338 (405)
T ss_pred CCC--CCCcChHHHHHHHcCCCEEEecCCCcH
Confidence 999 999999999999999999999999864
No 15
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=7.2e-32 Score=257.34 Aligned_cols=288 Identities=17% Similarity=0.145 Sum_probs=195.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch---------hh--
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------ET-- 144 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-- 144 (396)
||+++++....||.++++.+++++|.+.||+|++++.................. .|..+ ..... ..
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~g~~~-~~~~~~~~~~~~~~~~~~ 77 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL--QGADI-ELSEEEKEIYLEWNEENA 77 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh--cCCCC-CCCHHHHHHHHHHHHHHh
Confidence 589999888889999999999999999999999998543321101000011101 12222 11110 00
Q ss_pred --hhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchhh---hccccccccceeeccccHHHHHH
Q 016053 145 --INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDY---VKHLPLVAGAMIDSHVTAEYWKN 219 (396)
Q Consensus 145 --~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~ 219 (396)
.....+||+||+|++....+ ..+.+.. ..+++++.|..........+ .+.+..++..++.+ .++ .
T Consensus 78 ~~~~~~~~~Dvv~~h~~~~~~~-~~~~~~~----~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~-~- 147 (372)
T cd03792 78 ERPLLDLDADVVVIHDPQPLAL-PLFKKKR----GRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEY-V- 147 (372)
T ss_pred ccccccCCCCEEEECCCCchhH-HHhhhcC----CCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHh-c-
Confidence 12246899999998764332 2222221 24578888875432221111 22334555555444 222 1
Q ss_pred HHHhhhcccCCCEEEEecCCccch-hhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHH
Q 016053 220 RTRERLRIKMPDTYVVHLGNSKEL-MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (396)
Q Consensus 220 ~~~~~~g~~~~k~~vI~ngid~~~-~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~ 298 (396)
..++...+. +||||+|... +....+ ...+..+++++|+++++++|+++||+.+.||++.+++|++.+.+
T Consensus 148 ----~~~~~~~~~-vipngvd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~- 217 (372)
T cd03792 148 ----PPQVPPRKV-IIPPSIDPLSGKNRELS----PADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKE- 217 (372)
T ss_pred ----CCCCCCceE-EeCCCCCCCccccCCCC----HHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHh-
Confidence 124455555 9999999753 111111 12345678889998899999999999999999999999998865
Q ss_pred HHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc----CCHHHHHHHcCEEEecCCCCCCCccHH
Q 016053 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQAWGECFGRI 374 (396)
Q Consensus 299 ~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~----~~~~~~~~~aDv~v~pS~~~~E~fg~~ 374 (396)
+.++++|+++|+|+..++...+.++++.++.++.++|.|+|.. +++.++|++||++++||. .|+||++
T Consensus 218 ------~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~ 289 (372)
T cd03792 218 ------RVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLT 289 (372)
T ss_pred ------hCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHH
Confidence 2378999999998754433444556666667788899999875 689999999999999999 9999999
Q ss_pred HHHHHhcCCCEEEcCCCCCC
Q 016053 375 TIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 375 ~lEAma~G~PVI~t~~gG~~ 394 (396)
++||||||+|||+|+.+|..
T Consensus 290 ~lEA~a~G~Pvv~s~~~~~~ 309 (372)
T cd03792 290 VTEALWKGKPVIAGPVGGIP 309 (372)
T ss_pred HHHHHHcCCCEEEcCCCCch
Confidence 99999999999999999864
No 16
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=2.2e-31 Score=261.55 Aligned_cols=304 Identities=19% Similarity=0.154 Sum_probs=207.4
Q ss_pred cEEEEEeccCC----CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhh----------hhh--------hhhhc
Q 016053 75 KLVLLVSHELS----LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYS----------LEH--------KMWDR 132 (396)
Q Consensus 75 ~kIl~v~~~~~----~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~----------~~~--------~~~~~ 132 (396)
|||++++.+.. .||...++..|.++|+++||+|.|+++..+......... ... .....
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 58999998733 388889999999999999999999996544211110000 000 00112
Q ss_pred ceEEEEcCch-------------------h----------hhh-hccCCcEEEEcCchhhHHHHHHHhcCCCccccceee
Q 016053 133 GVQVISAKGQ-------------------E----------TIN-TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLW 182 (396)
Q Consensus 133 ~~~~~~~~~~-------------------~----------~~~-~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~ 182 (396)
|++++.+... + .+. ...+||+||+|+..++.....+....-.. ..++++
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~-~~~~v~ 159 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPN-PIKTVF 159 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCC-CCCEEE
Confidence 3333221100 0 000 12589999999976665444333321100 256899
Q ss_pred eeeeccc-ccCchh-------------------------hhccccccccceeeccccHHHHHHHH-----HhhhcccCCC
Q 016053 183 WIHEMRG-HYFKLD-------------------------YVKHLPLVAGAMIDSHVTAEYWKNRT-----RERLRIKMPD 231 (396)
Q Consensus 183 ~~h~~~~-~~~~~~-------------------------~~~~~~~~~~~~~~s~~~~~~~~~~~-----~~~~g~~~~k 231 (396)
++|+... ..+... ....+..++.++++|...++.+.... ...+.....+
T Consensus 160 TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~k 239 (473)
T TIGR02095 160 TIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGK 239 (473)
T ss_pred EcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCC
Confidence 9998631 111110 01123567788888887766654310 0001123578
Q ss_pred EEEEecCCccchhhhhhhhH-----------HHHHhHHHHHHHcCCCC--CCEEEEEEecccCCCCHHHHHHHHHHHHHH
Q 016053 232 TYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (396)
Q Consensus 232 ~~vI~ngid~~~~~~~~~~~-----------~~~~~~~~~r~~~g~~~--~~~~il~vG~l~~~Kg~~~li~a~~~l~~~ 298 (396)
+.+|+||+|.+.|.|..++. .+...+..+++++|++. +.++|+++||+.++||++.+++|+.++.+
T Consensus 240 i~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~- 318 (473)
T TIGR02095 240 LRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLE- 318 (473)
T ss_pred eEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHH-
Confidence 99999999999887643211 12334677899999975 78999999999999999999999998864
Q ss_pred HHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHH
Q 016053 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITI 376 (396)
Q Consensus 299 ~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~l 376 (396)
.+++|+|+|+|. +.+.+++++++++++ +++.+.+.. +++..+|++||++++||. .|+||++++
T Consensus 319 --------~~~~lvi~G~g~---~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~gl~~l 383 (473)
T TIGR02095 319 --------LGGQLVVLGTGD---PELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSR--FEPCGLTQL 383 (473)
T ss_pred --------cCcEEEEECCCC---HHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCC--cCCcHHHHH
Confidence 469999999985 236778888887765 568777654 457889999999999999 999999999
Q ss_pred HHHhcCCCEEEcCCCCCCC
Q 016053 377 EAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 377 EAma~G~PVI~t~~gG~~~ 395 (396)
|||+||+|||++++||...
T Consensus 384 EAma~G~pvI~s~~gg~~e 402 (473)
T TIGR02095 384 YAMRYGTVPIVRRTGGLAD 402 (473)
T ss_pred HHHHCCCCeEEccCCCccc
Confidence 9999999999999999753
No 17
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.2e-31 Score=257.37 Aligned_cols=286 Identities=15% Similarity=0.122 Sum_probs=201.4
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCch--hhhh--hhhhhhhhc-----------c------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEED--EVIY--SLEHKMWDR-----------G------ 133 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~--~~~~--~~~~~~~~~-----------~------ 133 (396)
|||+++.+.++. -.|+++.+-+.+|.++|++|.+++..++.+.. +... .+....... .
T Consensus 1 m~ia~~~~~~P~-~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFPL-SSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCCc-cchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 489999887764 44899999999999999999999954432210 0000 000000000 0
Q ss_pred eE-EE------EcCc------h---------hhhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc
Q 016053 134 VQ-VI------SAKG------Q---------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY 191 (396)
Q Consensus 134 ~~-~~------~~~~------~---------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~ 191 (396)
.. .. ..+. . ....+..++|+||+|....+.....+...+. ...+++++.|...-..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~~~~~~~~~~~~--~~~~~~~t~Hg~d~~~ 157 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAGVTAAKLRELGV--LRGKIATIFHGIDISS 157 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHHHHHHHHHHhCC--CCCCeEEEEccccccc
Confidence 00 00 0000 0 0111346899999998765544444333221 1134677888753111
Q ss_pred ------CchhhhccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcC
Q 016053 192 ------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLG 265 (396)
Q Consensus 192 ------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g 265 (396)
+...+...+...+.+++.|....+.+. .+|.+.+++.+||||+|.+.|.+....
T Consensus 158 ~~~~~~~~~~~~~~~~~ad~vv~~S~~~~~~l~-----~~g~~~~ki~vi~nGvd~~~f~~~~~~--------------- 217 (406)
T PRK15427 158 REVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQ-----KMGCPPEKIAVSRMGVDMTRFSPRPVK--------------- 217 (406)
T ss_pred chhhhhhhHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCHHHEEEcCCCCCHHHcCCCccc---------------
Confidence 112234455678888888877666554 347777899999999999888543210
Q ss_pred CCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEec
Q 016053 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (396)
Q Consensus 266 ~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (396)
...+.+.|+++||+.+.||++.+++|++.+.+ ++++++|+|+|+|+ +++++++++++++++++|+|+|
T Consensus 218 ~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~-------~~~~~~l~ivG~G~-----~~~~l~~~~~~~~l~~~V~~~G 285 (406)
T PRK15427 218 APATPLEIISVARLTEKKGLHVAIEACRQLKE-------QGVAFRYRILGIGP-----WERRLRTLIEQYQLEDVVEMPG 285 (406)
T ss_pred cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHh-------hCCCEEEEEEECch-----hHHHHHHHHHHcCCCCeEEEeC
Confidence 12456789999999999999999999998865 34799999999986 7889999999999999999999
Q ss_pred Cc--CCHHHHHHHcCEEEecCCC----CCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 346 KT--LTVAPYLAAIDVLVQNSQA----WGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~----~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
++ +++.++|+.||++|+||.. ..||||++++||||||+|||+|+.||..+
T Consensus 286 ~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E 341 (406)
T PRK15427 286 FKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPE 341 (406)
T ss_pred CCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchh
Confidence 86 6899999999999999971 02999999999999999999999999754
No 18
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.6e-31 Score=254.16 Aligned_cols=288 Identities=18% Similarity=0.191 Sum_probs=195.1
Q ss_pred EEEEEeccCCCCChHHHHH----HHHHHHHhCCC--------EEEEEecc-CCCCchhhhhhhhhhhhhcceEEEEcCc-
Q 016053 76 LVLLVSHELSLSGGPLLLM----ELAFLLRGVGT--------KVNWITIQ-KPSEEDEVIYSLEHKMWDRGVQVISAKG- 141 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~----~l~~~L~~~G~--------~V~vi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 141 (396)
.+++++..+..||+|+.+. .++++.++.|- .|.+++.. .+.. ..+ .+...+.+.++.+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~ 239 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPEL--RQD-FFLKEVLEEQVEVLEIAKI 239 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCccc--Ccc-hhHHHHHhcCCceEEeecc
Confidence 6999999999999999888 55555555554 67777722 2211 011 122223333443322110
Q ss_pred --------------------------------hhhhhhccCCcEEEEcCchhhHHHH-HHHhcCCCccccceeeeeeecc
Q 016053 142 --------------------------------QETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMR 188 (396)
Q Consensus 142 --------------------------------~~~~~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~vv~~~h~~~ 188 (396)
...+.++.+||+||+|...+..+.. .+...++|. ++.+.|.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpv----iv~~~h~~~ 315 (578)
T PRK15490 240 TGNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPR----IQLGLRGLP 315 (578)
T ss_pred chhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCE----EEEeecccC
Confidence 0123345899999999865543322 223345442 233444421
Q ss_pred cccCch----hhhc-----c-ccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHH
Q 016053 189 GHYFKL----DYVK-----H-LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLRE 258 (396)
Q Consensus 189 ~~~~~~----~~~~-----~-~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~ 258 (396)
...... .+.. . ....+ .++++..+++.+ .+.++++++|+.+||||+|.+.|.+.... +.
T Consensus 316 ~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l----~~~lgip~~KI~VIyNGVD~~rf~p~~~~------~~ 384 (578)
T PRK15490 316 PVVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHY----ADWLKLEAKHFQVVYNGVLPPSTEPSSEV------PH 384 (578)
T ss_pred CcchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHHH----HHHhCCCHHHEEEEeCCcchhhcCccchh------hH
Confidence 111111 1100 0 11111 444454444443 33568889999999999999887654211 11
Q ss_pred HHHH--HcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcC
Q 016053 259 HVRE--SLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (396)
Q Consensus 259 ~~r~--~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (396)
..++ ..+++++.++|+++||+.+.||++.+++++.++.+ +.++++|+|+|+|+ +++++++++++++
T Consensus 385 ~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk-------~~pdirLvIVGdG~-----~~eeLk~la~elg 452 (578)
T PRK15490 385 KIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQ-------HHPATRFVLVGDGD-----LRAEAQKRAEQLG 452 (578)
T ss_pred HHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHh-------HCCCeEEEEEeCch-----hHHHHHHHHHHcC
Confidence 1222 23445677899999999999999999999998765 23899999999986 7789999999999
Q ss_pred CCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 337 l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
+.++|+|+|+.+|+.++|+++|++|+||. +|+||++++||||||+|||+|+.||..+
T Consensus 453 L~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~E 509 (578)
T PRK15490 453 ILERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSAE 509 (578)
T ss_pred CCCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcHH
Confidence 99999999999999999999999999999 9999999999999999999999999753
No 19
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.7e-31 Score=256.57 Aligned_cols=290 Identities=19% Similarity=0.195 Sum_probs=202.1
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEE--Ec---Cc-hh-----
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--SA---KG-QE----- 143 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~-~~----- 143 (396)
||||++.+....||+++++.+|+++|.++||+|+++|...+... ........++.+. .. .. ..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 74 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSH------CFEETKDGTLPVRVRGDWLPRSIFGRFHIL 74 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchh------cchhccCCeeEEEEEeEEEcchhhHhHHHH
Confidence 58999999988899999999999999999999999995422100 0011111112221 10 00 00
Q ss_pred -------------hhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccC------chhh--------
Q 016053 144 -------------TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------KLDY-------- 196 (396)
Q Consensus 144 -------------~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~------~~~~-------- 196 (396)
.+....++|+||+|+......+... ... .+++++.|....... ...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~-~~~-----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 148 (392)
T cd03805 75 CAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLLKL-FSP-----SKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLE 148 (392)
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHHHH-hcC-----CcEEEEEecChHHhcCCCcHHHHHHHHHHHHHH
Confidence 0234479999999875443332211 111 457788884321110 0001
Q ss_pred hccccccccceeeccccHHHHHHHHHhhhcc-cCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEE
Q 016053 197 VKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAI 275 (396)
Q Consensus 197 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~-~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~ 275 (396)
...++.++.+++.|....+.+.+. ++. ...++.+||||+|.+.|.+.... ..++.....++.++|++
T Consensus 149 ~~~~~~ad~ii~~s~~~~~~~~~~----~~~~~~~~~~vi~n~vd~~~~~~~~~~--------~~~~~~~~~~~~~~i~~ 216 (392)
T cd03805 149 EFTTGMADKIVVNSNFTASVFKKT----FPSLAKNPREVVYPCVDTDSFESTSED--------PDPGLLIPKSGKKTFLS 216 (392)
T ss_pred HHHhhCceEEEEcChhHHHHHHHH----hcccccCCcceeCCCcCHHHcCccccc--------ccccccccCCCceEEEE
Confidence 112456788888888877766543 332 23335699999999887643211 12233445578899999
Q ss_pred EecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc---cchHHHHHHHHHHh-cCCCCcEEEecCc--CC
Q 016053 276 INSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---QTKFESELRNYVMQ-KKIQDRVHFVNKT--LT 349 (396)
Q Consensus 276 vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~---~~~~~~~l~~~~~~-~~l~~~V~~~g~~--~~ 349 (396)
+|++.+.||++.+++|++++.+..++ .++++|+++|+++.. +..+.+++++.+++ +++.++|+|+|++ ++
T Consensus 217 ~grl~~~Kg~~~ll~a~~~l~~~~~~----~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~ 292 (392)
T cd03805 217 INRFERKKNIALAIEAFAILKDKLAE----FKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQ 292 (392)
T ss_pred EeeecccCChHHHHHHHHHHHhhccc----ccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHH
Confidence 99999999999999999998753210 168999999988632 22356789999999 9999999999997 56
Q ss_pred HHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 350 VAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 350 ~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
+..+|++||++++||. .|+||++++||||||+|||+|+.||..
T Consensus 293 ~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~ 335 (392)
T cd03805 293 KELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPL 335 (392)
T ss_pred HHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcH
Confidence 7899999999999999 999999999999999999999999975
No 20
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=1.4e-31 Score=253.91 Aligned_cols=277 Identities=11% Similarity=0.112 Sum_probs=192.4
Q ss_pred cEEEEEeccCC-CCChHHHHHHHHHHHHhC--CCEEEEEeccCCCCchhhhhhhhhhhhhcceEEE--E----cCchhhh
Q 016053 75 KLVLLVSHELS-LSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI--S----AKGQETI 145 (396)
Q Consensus 75 ~kIl~v~~~~~-~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~ 145 (396)
|||+++++... .||+|+++.+++++|.++ |++|.+++.......... ...........+.+. . ......+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWL-KEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHH-HhcchhcccccchhhhhcccHHHHHHHHH
Confidence 58999988654 599999999999999999 899999986543211100 000000000011111 0 1112344
Q ss_pred hhccCCcEEEEcCchhhHHHHHHHh-cCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHHHHHhh
Q 016053 146 NTALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (396)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (396)
.+..+||+||+|.+....+...+.+ .+.| .+++.+.|......... ....+...+.+++.|..+.+.+. .
T Consensus 80 l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~~~~~~~-~~~~~~~~d~~i~~S~~~~~~~~-----~ 150 (359)
T PRK09922 80 LKETQPDIVICIDVISCLYANKARKKSGKQ---FKIFSWPHFSLDHKKHA-ECKKITCADYHLAISSGIKEQMM-----A 150 (359)
T ss_pred HHhcCCCEEEEcCHHHHHHHHHHHHHhCCC---CeEEEEecCcccccchh-hhhhhhcCCEEEEcCHHHHHHHH-----H
Confidence 5668999999998765544333332 2333 23455556432111111 11223677888888877766654 3
Q ss_pred hcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEeccc--CCCCHHHHHHHHHHHHHHHHhh
Q 016053 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS--RGKGQDLFLHSFYESLELIKEK 302 (396)
Q Consensus 225 ~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~--~~Kg~~~li~a~~~l~~~~~~~ 302 (396)
++++.+++.+||||+|.+.+..... -..+++.|+++||+. +.||++.+++++.++.
T Consensus 151 ~~~~~~ki~vi~N~id~~~~~~~~~----------------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~------ 208 (359)
T PRK09922 151 RGISAQRISVIYNPVEIKTIIIPPP----------------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT------ 208 (359)
T ss_pred cCCCHHHEEEEcCCCCHHHccCCCc----------------ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhC------
Confidence 4677788999999999665421100 013568899999996 4699999999998763
Q ss_pred ccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcC----CHHHHHHHcCEEEecCCCCCCCccHHHHHH
Q 016053 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL----TVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (396)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~----~~~~~~~~aDv~v~pS~~~~E~fg~~~lEA 378 (396)
++++|+++|+|+ ..+++++++++++++++|+|+|+++ ++.++|+.+|++|+||. .|+||++++||
T Consensus 209 ----~~~~l~ivG~g~-----~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEA 277 (359)
T PRK09922 209 ----GEWQLHIIGDGS-----DFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEA 277 (359)
T ss_pred ----CCeEEEEEeCCc-----cHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHH
Confidence 479999999986 6788999999999999999999864 46777888999999999 99999999999
Q ss_pred HhcCCCEEEcC-CCCCC
Q 016053 379 MAFQLPVLVLS-ELHPS 394 (396)
Q Consensus 379 ma~G~PVI~t~-~gG~~ 394 (396)
||||+|||+|+ .||+.
T Consensus 278 ma~G~Pvv~s~~~~g~~ 294 (359)
T PRK09922 278 MSYGIPCISSDCMSGPR 294 (359)
T ss_pred HHcCCCEEEeCCCCChH
Confidence 99999999999 88865
No 21
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=7.6e-31 Score=258.37 Aligned_cols=304 Identities=20% Similarity=0.157 Sum_probs=208.2
Q ss_pred EEEEEeccCC----CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhh------------------hhhhcc
Q 016053 76 LVLLVSHELS----LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH------------------KMWDRG 133 (396)
Q Consensus 76 kIl~v~~~~~----~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~------------------~~~~~~ 133 (396)
||++++++.. .||...++..|+++|++.||+|.|+++..+............ .....|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 5899998733 399999999999999999999999996543211100000000 011234
Q ss_pred eEEEEcCchh------------------------------hhhh--ccCCcEEEEcCchhhHHHHHHHhcCC--Cccccc
Q 016053 134 VQVISAKGQE------------------------------TINT--ALKADLIVLNTAVAGKWLDAVLKEDV--PRVLPN 179 (396)
Q Consensus 134 ~~~~~~~~~~------------------------------~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~--~~~~~~ 179 (396)
++++.+.... .+.. ..+||+||+|+..++.....+..... .....+
T Consensus 81 v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~~~~~ 160 (476)
T cd03791 81 VPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFFKNIK 160 (476)
T ss_pred ceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccCCCCC
Confidence 4443322110 0111 26899999999766554443333210 011367
Q ss_pred eeeeeeeccccc-Cchh--------------------------hhccccccccceeeccccHHHHHHH-----HHhhhcc
Q 016053 180 VLWWIHEMRGHY-FKLD--------------------------YVKHLPLVAGAMIDSHVTAEYWKNR-----TRERLRI 227 (396)
Q Consensus 180 vv~~~h~~~~~~-~~~~--------------------------~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~g~ 227 (396)
+++++|+..... +... ....+..++.++++|...++.+.+. +...+..
T Consensus 161 ~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~ 240 (476)
T cd03791 161 TVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRA 240 (476)
T ss_pred EEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHh
Confidence 999999863110 1100 0112346788888888777665431 1111223
Q ss_pred cCCCEEEEecCCccchhhhhhhhH-----------HHHHhHHHHHHHcCCC--CCCEEEEEEecccCCCCHHHHHHHHHH
Q 016053 228 KMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVR--NEDLLFAIINSVSRGKGQDLFLHSFYE 294 (396)
Q Consensus 228 ~~~k~~vI~ngid~~~~~~~~~~~-----------~~~~~~~~~r~~~g~~--~~~~~il~vG~l~~~Kg~~~li~a~~~ 294 (396)
...++.+|+||+|.+.|.+..++. .+...+..+++++|++ ++.++|+++||+.++||++.+++|+.+
T Consensus 241 ~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 320 (476)
T cd03791 241 RAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPE 320 (476)
T ss_pred ccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHH
Confidence 457899999999999887653321 1334567789999985 788999999999999999999999998
Q ss_pred HHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEec-Cc-CCHHHHHHHcCEEEecCCCCCCCcc
Q 016053 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-KT-LTVAPYLAAIDVLVQNSQAWGECFG 372 (396)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g-~~-~~~~~~~~~aDv~v~pS~~~~E~fg 372 (396)
+.+ .+++|+++|+|. ..+.+.++++++++ .+++.+.+ .. +++..+|+.||++++||. .|+||
T Consensus 321 l~~---------~~~~lvi~G~g~---~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~--~E~~g 384 (476)
T cd03791 321 LLE---------LGGQLVILGSGD---PEYEEALRELAARY--PGRVAVLIGYDEALAHLIYAGADFFLMPSR--FEPCG 384 (476)
T ss_pred HHH---------cCcEEEEEecCC---HHHHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHhCCEEECCCC--CCCCc
Confidence 865 469999999984 23567777777765 46787665 44 456789999999999999 99999
Q ss_pred HHHHHHHhcCCCEEEcCCCCCCC
Q 016053 373 RITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 373 ~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
++++|||+||+|||++++||...
T Consensus 385 l~~lEAma~G~pvI~~~~gg~~e 407 (476)
T cd03791 385 LTQMYAMRYGTVPIVRATGGLAD 407 (476)
T ss_pred HHHHHHhhCCCCCEECcCCCccc
Confidence 99999999999999999999764
No 22
>PRK14098 glycogen synthase; Provisional
Probab=99.98 E-value=1.2e-30 Score=255.10 Aligned_cols=304 Identities=16% Similarity=0.134 Sum_probs=209.3
Q ss_pred cEEEEEeccCCC----CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchh---h-----hhhh----hhh----------
Q 016053 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDE---V-----IYSL----EHK---------- 128 (396)
Q Consensus 75 ~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~---~-----~~~~----~~~---------- 128 (396)
|||+|++++..+ ||-.-++..|.++|+++||+|.|+++.-..-... . ...+ ...
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVTA 85 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEec
Confidence 699999988443 8888999999999999999999999744321110 0 0000 000
Q ss_pred hhhcceEEEEcCch---------------------------------hhhhh-ccCCcEEEEcCchhhHHHHHHHhcC--
Q 016053 129 MWDRGVQVISAKGQ---------------------------------ETINT-ALKADLIVLNTAVAGKWLDAVLKED-- 172 (396)
Q Consensus 129 ~~~~~~~~~~~~~~---------------------------------~~~~~-~~~~DiV~~~~~~~~~~~~~~~~~~-- 172 (396)
....+++++-+... ..+.. ..+||+||+|+..++.....+....
T Consensus 86 ~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~~l~~~~~~ 165 (489)
T PRK14098 86 LPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPLLLKTVYAD 165 (489)
T ss_pred ccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHHHHHHHhhh
Confidence 00012333211100 01111 1489999999966554433332211
Q ss_pred CC-ccccceeeeeeeccccc-Cch---------hh--------------hccccccccceeeccccHHHHHHHHHhhhcc
Q 016053 173 VP-RVLPNVLWWIHEMRGHY-FKL---------DY--------------VKHLPLVAGAMIDSHVTAEYWKNRTRERLRI 227 (396)
Q Consensus 173 ~~-~~~~~vv~~~h~~~~~~-~~~---------~~--------------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~ 227 (396)
.+ ....++++++|+..... +.. .+ +..+..++.++++|...++.+.......+|+
T Consensus 166 ~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl 245 (489)
T PRK14098 166 HEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGL 245 (489)
T ss_pred ccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcCh
Confidence 00 11357999999863110 100 00 0122567888888888777654310001343
Q ss_pred c------CCCEEEEecCCccchhhhhhhhH-----------HHHHhHHHHHHHcCCC--CCCEEEEEEecccCCCCHHHH
Q 016053 228 K------MPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVR--NEDLLFAIINSVSRGKGQDLF 288 (396)
Q Consensus 228 ~------~~k~~vI~ngid~~~~~~~~~~~-----------~~~~~~~~~r~~~g~~--~~~~~il~vG~l~~~Kg~~~l 288 (396)
+ ..++.+|+||||.+.|.|..++. .+...+..+++++|++ ++.++|+++||+.++||++.+
T Consensus 246 ~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~l 325 (489)
T PRK14098 246 DKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIINFDDFQGAELL 325 (489)
T ss_pred HHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEeccccccCcHHHH
Confidence 3 67899999999999887654321 1234467889999986 457899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCC
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~ 366 (396)
++|+.++.+ .+++|+|+|+|+ ..+++.+++++++++ ++|.|+|.. +++..+|++||++++||.
T Consensus 326 i~a~~~l~~---------~~~~lvivG~G~---~~~~~~l~~l~~~~~--~~V~~~g~~~~~~~~~~~a~aDi~l~PS~- 390 (489)
T PRK14098 326 AESLEKLVE---------LDIQLVICGSGD---KEYEKRFQDFAEEHP--EQVSVQTEFTDAFFHLAIAGLDMLLMPGK- 390 (489)
T ss_pred HHHHHHHHh---------cCcEEEEEeCCC---HHHHHHHHHHHHHCC--CCEEEEEecCHHHHHHHHHhCCEEEeCCC-
Confidence 999998864 589999999985 235688999988774 789999976 457899999999999999
Q ss_pred CCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 367 WGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 367 ~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
.|+||++.+|||+||+|+|++++||..
T Consensus 391 -~E~~Gl~~lEAma~G~ppVv~~~GGl~ 417 (489)
T PRK14098 391 -IESCGMLQMFAMSYGTIPVAYAGGGIV 417 (489)
T ss_pred -CCCchHHHHHHHhCCCCeEEecCCCCc
Confidence 999999999999999999999999974
No 23
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.98 E-value=5.9e-31 Score=255.80 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=186.7
Q ss_pred CCCChHHHHHHHHHHHHhCCC--EEEEEeccCCCCc--hhhhhhhhhhhhhcceEEEEcCch------------------
Q 016053 85 SLSGGPLLLMELAFLLRGVGT--KVNWITIQKPSEE--DEVIYSLEHKMWDRGVQVISAKGQ------------------ 142 (396)
Q Consensus 85 ~~gG~~~~~~~l~~~L~~~G~--~V~vi~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------------ 142 (396)
..||+++++.+|+++|.++|| +|+|+|...+... ........ ....|++++.....
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~--~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~ 101 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIE--RIAPGARIVRLPFGPRRYLRKELLWPYLDELA 101 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCee--EeCCCcEEEEecCCCCCCcChhhhhhhHHHHH
Confidence 349999999999999999997 9999994322100 00000011 11245666443210
Q ss_pred ---hhhhhc--cCCcEEEEcCchhhHHHHHHHh-cCCCccccceeeeeeecccccCc---------hh------------
Q 016053 143 ---ETINTA--LKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEMRGHYFK---------LD------------ 195 (396)
Q Consensus 143 ---~~~~~~--~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~vv~~~h~~~~~~~~---------~~------------ 195 (396)
..+.+. .+||+||+|+..++.....+.+ .+ .|++.+.|........ ..
T Consensus 102 ~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~-----~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (439)
T TIGR02472 102 DNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLG-----VPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIE 176 (439)
T ss_pred HHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhC-----CCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHH
Confidence 011121 3699999998654443333222 33 3578888864211000 00
Q ss_pred -hhccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEE
Q 016053 196 -YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA 274 (396)
Q Consensus 196 -~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il 274 (396)
....++..+.+++.+.. .+.+......+++++++.+||||+|.+.|.+..........+ ..++.++..+++++|+
T Consensus 177 ~~~~~~~~ad~ii~~s~~---~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~ 252 (439)
T TIGR02472 177 AEEETLAHASLVITSTHQ---EIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEID-NLLAPFLKDPEKPPIL 252 (439)
T ss_pred HHHHHHHhCCEEEECCHH---HHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHH-HHHHhhccccCCcEEE
Confidence 01123456666665432 222222212367788999999999999887543211111111 2233455567788999
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCcc------chHHHHHHHHHHhcCCCCcEEEecCc-
Q 016053 275 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ------TKFESELRNYVMQKKIQDRVHFVNKT- 347 (396)
Q Consensus 275 ~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~------~~~~~~l~~~~~~~~l~~~V~~~g~~- 347 (396)
++||+.+.||++.+++|++.+.. +++ .+++. +|+|+|+..+ ..+.+++.+++.++++.++|+|+|++
T Consensus 253 ~vGrl~~~Kg~~~li~A~~~l~~-~~~----~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~ 326 (439)
T TIGR02472 253 AISRPDRRKNIPSLVEAYGRSPK-LQE----MANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHR 326 (439)
T ss_pred EEcCCcccCCHHHHHHHHHhChh-hhh----hccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCC
Confidence 99999999999999999986532 111 13443 3568765321 11234566778889999999999974
Q ss_pred -CCHHHHHHHc----CEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 348 -LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 348 -~~~~~~~~~a----Dv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
+++.++|+.| |++|+||. .|+||++++||||||+|||+|+.||..+
T Consensus 327 ~~~~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~e 377 (439)
T TIGR02472 327 PDDVPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRD 377 (439)
T ss_pred HHHHHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHH
Confidence 7899999987 99999999 9999999999999999999999999753
No 24
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.98 E-value=1.6e-30 Score=245.55 Aligned_cols=285 Identities=21% Similarity=0.245 Sum_probs=207.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch------------h
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------E 143 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 143 (396)
||+++.+....||+++.+.+++++|.+.|++|.+++...... +...+...++.++..... .
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-------~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~ 73 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-------LGEELEEAGVPVYCLGKRPGRPDPGALLRLY 73 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-------hhHHHHhcCCeEEEEecccccccHHHHHHHH
Confidence 689999998889999999999999999999999998543221 222233345555332211 1
Q ss_pred hhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc---Cchhh----hccccccccceeeccccHHH
Q 016053 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---FKLDY----VKHLPLVAGAMIDSHVTAEY 216 (396)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~---~~~~~----~~~~~~~~~~~~~s~~~~~~ 216 (396)
.+.+..+||+||++......+........ ..++++++.|+..... ..... .......+..++.+....+.
T Consensus 74 ~~~~~~~~div~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 150 (365)
T cd03807 74 KLIRRLRPDVVHTWMYHADLYGGLAARLA---GVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEY 150 (365)
T ss_pred HHHHhhCCCEEEeccccccHHHHHHHHhc---CCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHH
Confidence 22345799999998755443333222221 1256888888764331 11111 11223445556666655554
Q ss_pred HHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHH
Q 016053 217 WKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESL 296 (396)
Q Consensus 217 ~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~ 296 (396)
+. .++++..++.++|||+|...+.+... .....+++++++++.+.|+++|++.+.||++.+++++..+.
T Consensus 151 ~~-----~~~~~~~~~~vi~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 219 (365)
T cd03807 151 HQ-----AIGYPPKKIVVIPNGVDTERFSPDLD------ARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLL 219 (365)
T ss_pred HH-----HcCCChhheeEeCCCcCHHhcCCccc------chHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHH
Confidence 44 33677788999999999887754321 13456788999889999999999999999999999999886
Q ss_pred HHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHH-hcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHH
Q 016053 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (396)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~ 375 (396)
+. +++++|+++|.+. .....+.... +.++.++|.++|..+++.++|+.||++++||. .|++|+++
T Consensus 220 ~~-------~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~--~e~~~~~~ 285 (365)
T cd03807 220 KK-------FPNARLLLVGDGP-----DRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSL--SEGFPNVL 285 (365)
T ss_pred Hh-------CCCeEEEEecCCc-----chhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCc--cccCCcHH
Confidence 52 3799999999986 4455555555 78888999999999999999999999999999 89999999
Q ss_pred HHHHhcCCCEEEcCCCCCCC
Q 016053 376 IEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 376 lEAma~G~PVI~t~~gG~~~ 395 (396)
+|||+||+|||+++.||...
T Consensus 286 ~Ea~a~g~PvI~~~~~~~~e 305 (365)
T cd03807 286 LEAMACGLPVVATDVGDNAE 305 (365)
T ss_pred HHHHhcCCCEEEcCCCChHH
Confidence 99999999999999998754
No 25
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.98 E-value=7.4e-32 Score=237.91 Aligned_cols=278 Identities=18% Similarity=0.134 Sum_probs=212.5
Q ss_pred EEEEEecc--CCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEc--------------
Q 016053 76 LVLLVSHE--LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-------------- 139 (396)
Q Consensus 76 kIl~v~~~--~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 139 (396)
+|+++++. .+.||.|...+.|.+.|-+.||.|.+++..-++- ..-....+|+.++..
T Consensus 2 ~i~mVsdff~P~~ggveshiy~lSq~li~lghkVvvithayg~r-------~girylt~glkVyylp~~v~~n~tT~ptv 74 (426)
T KOG1111|consen 2 RILMVSDFFYPSTGGVESHIYALSQCLIRLGHKVVVITHAYGNR-------VGIRYLTNGLKVYYLPAVVGYNQTTFPTV 74 (426)
T ss_pred cceeeCcccccCCCChhhhHHHhhcchhhcCCeEEEEeccccCc-------cceeeecCCceEEEEeeeeeecccchhhh
Confidence 68888876 3449999999999999999999999999432210 000111223444332
Q ss_pred ----CchhhhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCch------hhhccccccccceee
Q 016053 140 ----KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMID 209 (396)
Q Consensus 140 ----~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~------~~~~~~~~~~~~~~~ 209 (396)
+..+.+..++++.+||.|++++......+...+ ..+-+++++.|...++.--. .....+...++++|.
T Consensus 75 ~~~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~har--tMGlktVfTdHSlfGfad~~si~~n~ll~~sL~~id~~IcV 152 (426)
T KOG1111|consen 75 FSDFPLLRPILLRERIEIVHGHSPFSYLAHEALMHAR--TMGLKTVFTDHSLFGFADIGSILTNKLLPLSLANIDRIICV 152 (426)
T ss_pred hccCcccchhhhhhceEEEecCChHHHHHHHHHHHHH--hcCceEEEeccccccccchhhhhhcceeeeeecCCCcEEEE
Confidence 223455556899999999988776544433322 22245889999875443221 122334578999999
Q ss_pred ccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHH
Q 016053 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (396)
Q Consensus 210 s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li 289 (396)
|++.++...- +-.++++++.+|||.++.+.|.|.+... .+.+-..|+.++|+.++||+|.++
T Consensus 153 shtskentvl----r~~L~p~kvsvIPnAv~~~~f~P~~~~~--------------~S~~i~~ivv~sRLvyrKGiDll~ 214 (426)
T KOG1111|consen 153 SHTSKENTVL----RGALAPAKVSVIPNAVVTHTFTPDAADK--------------PSADIITIVVASRLVYRKGIDLLL 214 (426)
T ss_pred eecCCCceEE----EeccCHhHeeeccceeeccccccCcccc--------------CCCCeeEEEEEeeeeeccchHHHH
Confidence 9988754321 3357889999999999999998743210 123338999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCC
Q 016053 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAW 367 (396)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~ 367 (396)
+++.++.+ ++|+++|+|+|+|+ .+..++++.+++.++++|.++|.+ +++.+.|.+.|||++||.
T Consensus 215 ~iIp~vc~-------~~p~vrfii~GDGP-----k~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSl-- 280 (426)
T KOG1111|consen 215 EIIPSVCD-------KHPEVRFIIIGDGP-----KRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSL-- 280 (426)
T ss_pred HHHHHHHh-------cCCCeeEEEecCCc-----ccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHH--
Confidence 99999887 56999999999998 778899999999999999999986 889999999999999999
Q ss_pred CCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 368 GECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 368 ~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
.|.||++++|||+||+|||+|++||..
T Consensus 281 TEafc~~ivEAaScGL~VVsTrVGGIp 307 (426)
T KOG1111|consen 281 TEAFCMVIVEAASCGLPVVSTRVGGIP 307 (426)
T ss_pred HHHHHHHHHHHHhCCCEEEEeecCCcc
Confidence 999999999999999999999999965
No 26
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.98 E-value=1.8e-30 Score=247.69 Aligned_cols=274 Identities=16% Similarity=0.237 Sum_probs=191.4
Q ss_pred cEEEEEecc-CC-----CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhh-hhhc--ceEEEEcCch---
Q 016053 75 KLVLLVSHE-LS-----LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHK-MWDR--GVQVISAKGQ--- 142 (396)
Q Consensus 75 ~kIl~v~~~-~~-----~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~--- 142 (396)
.||++++++ ++ .||+|+++.++++.|.. +|++++...++ +.+. .... ++..++....
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPG--------YPEYTKVNDNCDIHYIGFSRIYKR 71 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCC--------CCchhhccCCCceEEEEeccccch
Confidence 466666654 22 28889999999999943 99999954443 1111 1111 2222211110
Q ss_pred --------------hh----h--hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccc
Q 016053 143 --------------ET----I--NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPL 202 (396)
Q Consensus 143 --------------~~----~--~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~ 202 (396)
.. . ....++|+||+|+..... ..+ ....+. .+++.+.|+.. ... .+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~--~~~-~~~~~~--~~~v~~~h~~~----~~~---~~~~ 139 (380)
T PRK15484 72 LFQKWTRLDPLPYSQRILNIAHKFTITKDSVIVIHNSMKLY--RQI-RERAPQ--AKLVMHMHNAF----EPE---LLDK 139 (380)
T ss_pred hhhhhhccCchhHHHHHHHHHHhcCCCCCcEEEEeCcHHhH--HHH-HhhCCC--CCEEEEEeccc----Chh---Hhcc
Confidence 10 1 112569999999854322 111 222222 45777788641 111 2235
Q ss_pred cccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCC
Q 016053 203 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG 282 (396)
Q Consensus 203 ~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~ 282 (396)
.+.+++.|....+.+.+. .+..++.+||||+|.+.|.+.. +...+++++++++..+|+|+||+.+.
T Consensus 140 ~~~ii~~S~~~~~~~~~~------~~~~~i~vIpngvd~~~~~~~~--------~~~~~~~~~~~~~~~~il~~Grl~~~ 205 (380)
T PRK15484 140 NAKIIVPSQFLKKFYEER------LPNADISIVPNGFCLETYQSNP--------QPNLRQQLNISPDETVLLYAGRISPD 205 (380)
T ss_pred CCEEEEcCHHHHHHHHhh------CCCCCEEEecCCCCHHHcCCcc--------hHHHHHHhCCCCCCeEEEEeccCccc
Confidence 577788887776655432 3456799999999988776432 24467788988888999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc----cchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHH
Q 016053 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA 356 (396)
Q Consensus 283 Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~----~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~ 356 (396)
||++.+++|++++.+ ++|+++|+|+|++... ..++.+.+++++++++ ++++|+|++ +++.++|++
T Consensus 206 Kg~~~Li~A~~~l~~-------~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~ 276 (380)
T PRK15484 206 KGILLLMQAFEKLAT-------AHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPL 276 (380)
T ss_pred cCHHHHHHHHHHHHH-------hCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHh
Confidence 999999999999865 3489999999988642 1235566777777665 679999986 689999999
Q ss_pred cCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 357 aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
||++|+||. |.|+||++++||||||+|||+|+.||..+
T Consensus 277 aDv~v~pS~-~~E~f~~~~lEAma~G~PVI~s~~gg~~E 314 (380)
T PRK15484 277 ADLVVVPSQ-VEEAFCMVAVEAMAAGKPVLASTKGGITE 314 (380)
T ss_pred CCEEEeCCC-CccccccHHHHHHHcCCCEEEeCCCCcHh
Confidence 999999998 25999999999999999999999999753
No 27
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.98 E-value=3.7e-31 Score=248.48 Aligned_cols=267 Identities=14% Similarity=0.075 Sum_probs=183.1
Q ss_pred cEEEEEeccC------CCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhh--cceEE---EEcCchh
Q 016053 75 KLVLLVSHEL------SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWD--RGVQV---ISAKGQE 143 (396)
Q Consensus 75 ~kIl~v~~~~------~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~ 143 (396)
|||+++++.. ..||+++++.+++++|.++||+|++++.................... ..... .......
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAPLVPVVPEPLRLDAPGRDRAEAEALALAE 80 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccceeeccCCCcccccchhhHhhHHHHHHHH
Confidence 5999999875 55999999999999999999999999955432111100000000000 00000 0001112
Q ss_pred hhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHHHHHh
Q 016053 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (396)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (396)
.+.+..++|+||+|+.....+ .+...+ .+++++.|+........ ........+..++.|......+..
T Consensus 81 ~~~~~~~~Divh~~~~~~~~~--~~~~~~-----~~~v~~~h~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~---- 148 (335)
T cd03802 81 RALAAGDFDIVHNHSLHLPLP--FARPLP-----VPVVTTLHGPPDPELLK-LYYAARPDVPFVSISDAQRRPWPP---- 148 (335)
T ss_pred HHHhcCCCCEEEecCcccchh--hhcccC-----CCEEEEecCCCCcccch-HHHhhCcCCeEEEecHHHHhhccc----
Confidence 344568899999999766554 222223 45788889774333222 223333445556655554443221
Q ss_pred hhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhc
Q 016053 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (396)
Q Consensus 224 ~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~ 303 (396)
..++.+||||+|.+.|.+. +.++..++++|++.+.||++.+++++++
T Consensus 149 -----~~~~~vi~ngvd~~~~~~~-------------------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~--------- 195 (335)
T cd03802 149 -----LPWVATVHNGIDLDDYPFR-------------------GPKGDYLLFLGRISPEKGPHLAIRAARR--------- 195 (335)
T ss_pred -----ccccEEecCCcChhhCCCC-------------------CCCCCEEEEEEeeccccCHHHHHHHHHh---------
Confidence 1679999999999887542 2456689999999999999999999764
Q ss_pred cCCCCEEEEEEecCCCccchHHHHHHHHHHhcC-CCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHh
Q 016053 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK-IQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (396)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~-l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma 380 (396)
.+++|+++|++. ..+.+.....+.. +.++|+|+|++ +++.++|+.+|++++||. |.|+||++++||||
T Consensus 196 ---~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~~lEAma 266 (335)
T cd03802 196 ---AGIPLKLAGPVS-----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLVMIEAMA 266 (335)
T ss_pred ---cCCeEEEEeCCC-----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchHHHHHHh
Confidence 589999999986 3344444444433 56899999997 568899999999999998 25999999999999
Q ss_pred cCCCEEEcCCCCCCC
Q 016053 381 FQLPVLVLSELHPSI 395 (396)
Q Consensus 381 ~G~PVI~t~~gG~~~ 395 (396)
||+|||+++.||..+
T Consensus 267 ~G~PvI~~~~~~~~e 281 (335)
T cd03802 267 CGTPVIAFRRGAVPE 281 (335)
T ss_pred cCCCEEEeCCCCchh
Confidence 999999999999763
No 28
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.97 E-value=2.7e-30 Score=247.84 Aligned_cols=277 Identities=16% Similarity=0.120 Sum_probs=197.7
Q ss_pred cEEEEEeccCCC---CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchh--------
Q 016053 75 KLVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-------- 143 (396)
Q Consensus 75 ~kIl~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 143 (396)
|||+++++.+.+ ||.++++.+++++|.++ ++|+|++..... ....++.+.......
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR------------FDSEGLTVKGYRPWSELKEANKA 67 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch------------hcCCCeEEEEecChhhccchhhh
Confidence 589999987653 88889999999999987 777777743221 012233333221110
Q ss_pred ---------hhhhccCCcEEEEcCchhhHHHHHHH-hcCCCccccceeeeeeecccc--cC-----------chhhhccc
Q 016053 144 ---------TINTALKADLIVLNTAVAGKWLDAVL-KEDVPRVLPNVLWWIHEMRGH--YF-----------KLDYVKHL 200 (396)
Q Consensus 144 ---------~~~~~~~~DiV~~~~~~~~~~~~~~~-~~~~~~~~~~vv~~~h~~~~~--~~-----------~~~~~~~~ 200 (396)
......++|+||+|+.........+. ..+ .|++++.|+.... +. .......+
T Consensus 68 ~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~~~~~~~~-----~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (388)
T TIGR02149 68 LGTFSVDLAMANDPVDADVVHSHTWYTFLAGHLAKKLYD-----KPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAI 142 (388)
T ss_pred hhhhhHHHHHhhCCCCCCeEeecchhhhhHHHHHHHhcC-----CCEEEEeecccccccccccccccchhHHHHHHHHHH
Confidence 11122479999999865543222222 223 4578888876321 00 00012234
Q ss_pred cccccceeeccccHHHHHHHHHhhh-cccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecc
Q 016053 201 PLVAGAMIDSHVTAEYWKNRTRERL-RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (396)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~-g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l 279 (396)
..++.+++.|....+.+.+ .+ +++..++.+||||+|.+.+.+.. +...+++++++++.++|+|+||+
T Consensus 143 ~~ad~vi~~S~~~~~~~~~----~~~~~~~~~i~vi~ng~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~Grl 210 (388)
T TIGR02149 143 EAADRVIAVSGGMREDILK----YYPDLDPEKVHVIYNGIDTKEYKPDD--------GNVVLDRYGIDRSRPYILFVGRI 210 (388)
T ss_pred hhCCEEEEccHHHHHHHHH----HcCCCCcceEEEecCCCChhhcCCCc--------hHHHHHHhCCCCCceEEEEEccc
Confidence 5678888888877666553 34 56677899999999998876432 34578889998888999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCC-CCcEEEecC-c--CCHHHHHH
Q 016053 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNK-T--LTVAPYLA 355 (396)
Q Consensus 280 ~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~-~--~~~~~~~~ 355 (396)
.+.||++.+++|++++. ++++++++|++... .++.+.+++.+++++. .++|.+++. . +++.++|+
T Consensus 211 ~~~Kg~~~li~a~~~l~----------~~~~l~i~g~g~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 279 (388)
T TIGR02149 211 TRQKGVPHLLDAVHYIP----------KDVQVVLCAGAPDT-PEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS 279 (388)
T ss_pred ccccCHHHHHHHHHHHh----------hcCcEEEEeCCCCc-HHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH
Confidence 99999999999999874 47889999876532 2356777888877765 245777653 3 78999999
Q ss_pred HcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 356 ~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
+||++|+||. .|+||++++|||+||+|||+|+.||..
T Consensus 280 ~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~ 316 (388)
T TIGR02149 280 NAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIP 316 (388)
T ss_pred hCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHH
Confidence 9999999999 999999999999999999999999865
No 29
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=1.7e-30 Score=247.80 Aligned_cols=281 Identities=13% Similarity=0.109 Sum_probs=185.7
Q ss_pred cccEEEEEeccCCC--CChHHHHHHHHHHHHhCC-CEEEEEeccCCCCchhh--------------hhhhhhhh-----h
Q 016053 73 KSKLVLLVSHELSL--SGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEV--------------IYSLEHKM-----W 130 (396)
Q Consensus 73 ~~~kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~~~~~--------------~~~~~~~~-----~ 130 (396)
++|||++++..+.+ +|.......++.+|+++| |+|+++.+..+..+... .....+.. .
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 45899999977544 999899999999999999 79999996533111000 00000000 0
Q ss_pred hcceEE--EEc------------CchhhhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCch--
Q 016053 131 DRGVQV--ISA------------KGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL-- 194 (396)
Q Consensus 131 ~~~~~~--~~~------------~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~-- 194 (396)
..++.+ ++- ..........+||+||++++....++..+.....+. ..++.++|.....|...
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~--~~vV~tyHT~y~~Y~~~~~ 160 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKF--RLVIGIVHTNYLEYVKREK 160 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcC--CcEEEEECCChHHHHHHhc
Confidence 011111 111 112233456899999999987766652222221111 22677788743232111
Q ss_pred -----h-hh----ccc--cccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHH
Q 016053 195 -----D-YV----KHL--PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE 262 (396)
Q Consensus 195 -----~-~~----~~~--~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~ 262 (396)
. .. +++ ...+.+++.|....+ +. ....+..+|+|.+.|.+... ..++
T Consensus 161 ~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~-----------~~~i~~v~GVd~~~f~~~~~---------~~~~ 219 (462)
T PLN02846 161 NGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YP-----------RSIICNVHGVNPKFLEIGKL---------KLEQ 219 (462)
T ss_pred cchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-Hh-----------hCEEecCceechhhcCCCcc---------cHhh
Confidence 1 11 112 124566666653322 11 12444558999998875421 1222
Q ss_pred HcCCCCC--CEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCc
Q 016053 263 SLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (396)
Q Consensus 263 ~~g~~~~--~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (396)
.+. .++ .+.++|+||+.++||++.+++|++++.+. .++++|+|+|+|+ +++++++.++++++..+
T Consensus 220 ~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~-------~~~~~l~ivGdGp-----~~~~L~~~a~~l~l~~~ 286 (462)
T PLN02846 220 QKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKE-------LSGLEVDLYGSGE-----DSDEVKAAAEKLELDVR 286 (462)
T ss_pred hcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhh-------CCCeEEEEECCCc-----cHHHHHHHHHhcCCcEE
Confidence 222 233 34689999999999999999999987652 3789999999997 88899999999988744
Q ss_pred EEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCC
Q 016053 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHP 393 (396)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~ 393 (396)
+ |.|. .+..++|..+|+||+||. .|+||++++||||||+|||+++.+|.
T Consensus 287 v-f~G~-~~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~~~ 335 (462)
T PLN02846 287 V-YPGR-DHADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN 335 (462)
T ss_pred E-ECCC-CCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCCCc
Confidence 4 7775 466689999999999999 99999999999999999999999985
No 30
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=8.5e-30 Score=239.01 Aligned_cols=286 Identities=21% Similarity=0.217 Sum_probs=208.2
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEE------EEcCchhhhhhcc
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV------ISAKGQETINTAL 149 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 149 (396)
||+++++....||+++.+.+++++|.+.||+|.+++......................... ........+.+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 6899998888899999999999999999999999995433211110000000000000000 0011123344557
Q ss_pred CCcEEEEcCc-hhhHHHHHHHhcCCCccccceeeeeeecccccCch------hhhccccccccceeeccccHHHHHHHHH
Q 016053 150 KADLIVLNTA-VAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (396)
Q Consensus 150 ~~DiV~~~~~-~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (396)
++|+||++.. ............ ..+.+++.|+........ .....+...+.+++.|....+.+.+
T Consensus 81 ~~dii~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~--- 152 (353)
T cd03811 81 KPDVVISHLTTTPNVLALLAARL-----GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLK--- 152 (353)
T ss_pred CCCEEEEcCccchhHHHHHHhhc-----CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHH---
Confidence 8999999987 333222222211 256888899875332221 1344567888899999888877665
Q ss_pred hhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhh
Q 016053 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (396)
Q Consensus 223 ~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~ 302 (396)
.++.+..++.+||||+|.+.+...... +..++.+++.+.|+++|++.+.||++.++++++.+.+
T Consensus 153 -~~~~~~~~~~vi~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~----- 216 (353)
T cd03811 153 -LLGIPPDKIEVIYNPIDIEEIRALAEE----------PLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRK----- 216 (353)
T ss_pred -hhcCCccccEEecCCcChhhcCcccch----------hhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhh-----
Confidence 344446789999999998877543210 0034556788999999999999999999999999865
Q ss_pred ccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcC
Q 016053 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ 382 (396)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G 382 (396)
++++++|+++|.+. ..+.+++.++++++.++|++.|..+++.++|+.||++++||. .|++|++++|||++|
T Consensus 217 --~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~--~e~~~~~~~Ea~~~G 287 (353)
T cd03811 217 --EGPDARLVILGDGP-----LREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSR--YEGFPNVLLEAMALG 287 (353)
T ss_pred --cCCCceEEEEcCCc-----cHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcc--cCCCCcHHHHHHHhC
Confidence 23799999999886 667788899999999999999999999999999999999999 899999999999999
Q ss_pred CCEEEcCCCCCC
Q 016053 383 LPVLVLSELHPS 394 (396)
Q Consensus 383 ~PVI~t~~gG~~ 394 (396)
+|||+++.||.+
T Consensus 288 ~PvI~~~~~~~~ 299 (353)
T cd03811 288 TPVVATDCPGPR 299 (353)
T ss_pred CCEEEcCCCChH
Confidence 999999999865
No 31
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.97 E-value=2.7e-29 Score=242.22 Aligned_cols=290 Identities=18% Similarity=0.099 Sum_probs=199.4
Q ss_pred EEEEEeccCCCC-ChHHHHHHHHHHHHhC--CCEEEEEeccCCCCchhhhhhhhh---hhhhcceEEEEc--C-c-----
Q 016053 76 LVLLVSHELSLS-GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEH---KMWDRGVQVISA--K-G----- 141 (396)
Q Consensus 76 kIl~v~~~~~~g-G~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~-~----- 141 (396)
.|.|+++....| |+|+.+.+.+.+|++. |++|+++|...............+ .....++.++.. . .
T Consensus 2 ~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (419)
T cd03806 2 TVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAS 81 (419)
T ss_pred eEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccc
Confidence 588999998886 8899999999999998 899999996543211111100111 111223332221 1 0
Q ss_pred -h-h-------------hh--hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecc---ccc----------
Q 016053 142 -Q-E-------------TI--NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR---GHY---------- 191 (396)
Q Consensus 142 -~-~-------------~~--~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~---~~~---------- 191 (396)
. + .+ ....+||+++.++..+..+.......+ .+++..+|... ...
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~-----~~~i~y~h~P~~~~d~l~~~~~~~~~~ 156 (419)
T cd03806 82 TYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGG-----CPVGAYVHYPTISTDMLQKVRSREASY 156 (419)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcC-----CeEEEEecCCcchHHHHHHHhhccccc
Confidence 0 0 00 012479999988854433222111112 46888888331 000
Q ss_pred --------------Cch--------hhhccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhh
Q 016053 192 --------------FKL--------DYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAED 249 (396)
Q Consensus 192 --------------~~~--------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~ 249 (396)
.+. ........++.++++|..+.+.+.+ .++. ..++.+||||+|.+.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~----~~~~-~~~~~vi~~gvd~~~~~~~~~ 231 (419)
T cd03806 157 NNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRS----LWKR-NTKPSIVYPPCDVEELLKLPL 231 (419)
T ss_pred cCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHH----HhCc-CCCcEEEcCCCCHHHhccccc
Confidence 000 0112235778888888888776654 3332 247999999999887653210
Q ss_pred hHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc-cchHHHHH
Q 016053 250 NVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESEL 328 (396)
Q Consensus 250 ~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~~~l 328 (396)
....+.++|+++||+.+.||++.+++|++++.+..++. ..++++|+|+|++... +.++.+++
T Consensus 232 ---------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~--~~~~~~lvivG~~~~~~~~~~~~~L 294 (419)
T cd03806 232 ---------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEE--IKEKIKLVLIGSCRNEDDEKRVEDL 294 (419)
T ss_pred ---------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccc--ccCceEEEEEcCCCCcccHHHHHHH
Confidence 01245679999999999999999999999987643210 0136999999987533 23477889
Q ss_pred HHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 329 RNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 329 ~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
++++++++++++|+|+|.. +++.++|+.||++|+||. .|+||++++||||||+|||+++.||+.
T Consensus 295 ~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa~G~pvIa~~~ggp~ 360 (419)
T cd03806 295 KLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMAAGLIPLAHASGGPL 360 (419)
T ss_pred HHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHHcCCcEEEEcCCCCc
Confidence 9999999999999999985 789999999999999999 999999999999999999999999874
No 32
>PLN02949 transferase, transferring glycosyl groups
Probab=99.97 E-value=4.5e-29 Score=241.37 Aligned_cols=286 Identities=15% Similarity=0.090 Sum_probs=192.7
Q ss_pred cEEEEEeccCCCC-ChHHHHHHHHHHHHhCCC--EEEEEeccCCCCchhhhhhhhhhhhhcce------EEEEcC-c---
Q 016053 75 KLVLLVSHELSLS-GGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGV------QVISAK-G--- 141 (396)
Q Consensus 75 ~kIl~v~~~~~~g-G~~~~~~~l~~~L~~~G~--~V~vi~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~--- 141 (396)
++|+|+++..+.| |+|+.+.+.+.+|++.|+ +|++.|.+......+ .+.......++ .++.++ .
T Consensus 34 ~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~---~l~~~~~~~~i~~~~~~~~v~l~~~~~~ 110 (463)
T PLN02949 34 RAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDS---LAARARDRFGVELLSPPKVVHLRKRKWI 110 (463)
T ss_pred cEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHH---HHHHHHhhcceecCCCceEEEecccccc
Confidence 4899999998775 999999999999999998 777777442211111 11111112222 112221 0
Q ss_pred ----h----------hhh------hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc----------
Q 016053 142 ----Q----------ETI------NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------- 191 (396)
Q Consensus 142 ----~----------~~~------~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~---------- 191 (396)
. +.+ .....| .|++.+......+..+...+ .++++++|......
T Consensus 111 ~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p-~v~vDt~~~~~~~pl~~~~~-----~~v~~yvH~p~~~~dm~~~v~~~~ 184 (463)
T PLN02949 111 EEETYPRFTMIGQSLGSVYLAWEALCKFTP-LYFFDTSGYAFTYPLARLFG-----CKVVCYTHYPTISSDMISRVRDRS 184 (463)
T ss_pred ccccCCceehHHHHHHHHHHHHHHHHhcCC-CEEEeCCCcccHHHHHHhcC-----CcEEEEEeCCcchHHHHHHHhhcc
Confidence 0 000 011344 46665532111112222223 56899999642110
Q ss_pred --C-------c--------hhhhc--------cccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhh
Q 016053 192 --F-------K--------LDYVK--------HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEV 246 (396)
Q Consensus 192 --~-------~--------~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~ 246 (396)
+ . ..+.+ ....++.++++|..+.+.+.+ .++. ++++.++|||+|.+.+..
T Consensus 185 ~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~----~~~~-~~~i~vvyp~vd~~~~~~ 259 (463)
T PLN02949 185 SMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEA----LWRI-PERIKRVYPPCDTSGLQA 259 (463)
T ss_pred cccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHH----HcCC-CCCeEEEcCCCCHHHccc
Confidence 0 0 00111 114677888888888776643 3343 357899999999875531
Q ss_pred hhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc-cchHH
Q 016053 247 AEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFE 325 (396)
Q Consensus 247 ~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~ 325 (396)
.+. ..++++..++++||+.++||++.+|+|++++.+.+++ +.++++|+|+|++... +.++.
T Consensus 260 ~~~---------------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~---~~~~~~LvIvG~~~~~~~~~~~ 321 (463)
T PLN02949 260 LPL---------------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDA---DVPRPKLQFVGSCRNKEDEERL 321 (463)
T ss_pred CCc---------------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccc---cCCCcEEEEEeCCCCcccHHHH
Confidence 110 0023456899999999999999999999988764432 2378999999998532 33466
Q ss_pred HHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 326 SELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 326 ~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
+++++++++++++++|+|+|.. +++.++|+.||++|+||. .|+||++++||||+|+|||+++.||+.
T Consensus 322 ~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA~G~PVIa~~~gGp~ 390 (463)
T PLN02949 322 QKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMAAGAVPIAHNSAGPK 390 (463)
T ss_pred HHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHHcCCcEEEeCCCCCc
Confidence 8899999999999999999987 789999999999999999 999999999999999999999999974
No 33
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.97 E-value=1.6e-29 Score=257.03 Aligned_cols=308 Identities=16% Similarity=0.119 Sum_probs=202.1
Q ss_pred cccEEEEEecc-C------------CCCChHHHHHHHHHHHHhCC--CEEEEEeccCCCC--chhhhhhh----------
Q 016053 73 KSKLVLLVSHE-L------------SLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSE--EDEVIYSL---------- 125 (396)
Q Consensus 73 ~~~kIl~v~~~-~------------~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~--~~~~~~~~---------- 125 (396)
+++.|++|+.- . ..||...++.+|+++|.+.| |+|+++|...... +.....+.
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 45678888732 1 11566699999999999998 8999999432211 11111111
Q ss_pred --hhhhhhcceEEEEcCch-----------------------hhhhh-------------ccCCcEEEEcCchhhHHHHH
Q 016053 126 --EHKMWDRGVQVISAKGQ-----------------------ETINT-------------ALKADLIVLNTAVAGKWLDA 167 (396)
Q Consensus 126 --~~~~~~~~~~~~~~~~~-----------------------~~~~~-------------~~~~DiV~~~~~~~~~~~~~ 167 (396)
.......|+.++.++.. ..+.. ...||+||+|...++.....
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~ 327 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAAL 327 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHH
Confidence 01112236776554311 01100 01499999999777665444
Q ss_pred HHh-cCCCccccceeeeeeecccccC------------------c-hhh----hccccccccceeeccccHHHHHHHHH-
Q 016053 168 VLK-EDVPRVLPNVLWWIHEMRGHYF------------------K-LDY----VKHLPLVAGAMIDSHVTAEYWKNRTR- 222 (396)
Q Consensus 168 ~~~-~~~~~~~~~vv~~~h~~~~~~~------------------~-~~~----~~~~~~~~~~~~~s~~~~~~~~~~~~- 222 (396)
+.. .++ |++.+.|....... . ... ...+..++.+++.|..........+.
T Consensus 328 L~~~lgV-----P~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~ 402 (1050)
T TIGR02468 328 LSGALNV-----PMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDG 402 (1050)
T ss_pred HHHhhCC-----CEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhcc
Confidence 443 344 47888886421100 0 000 12245777888888776654322110
Q ss_pred -----------------hhhcccCCCEEEEecCCccchhhhhhhhHHHHH-------------hHHHHHHHcCCCCCCEE
Q 016053 223 -----------------ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRV-------------LREHVRESLGVRNEDLL 272 (396)
Q Consensus 223 -----------------~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~-------------~~~~~r~~~g~~~~~~~ 272 (396)
..+|...+++.|||||+|++.|.+.....+... ....+++ +..++++++
T Consensus 403 ~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r-~~~~pdkpv 481 (1050)
T TIGR02468 403 FDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMR-FFTNPRKPM 481 (1050)
T ss_pred CCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHh-hcccCCCcE
Confidence 012223458999999999999987532221100 0123333 334678889
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc------cchHHHHHHHHHHhcCCCCcEEEecC
Q 016053 273 FAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA------QTKFESELRNYVMQKKIQDRVHFVNK 346 (396)
Q Consensus 273 il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~------~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (396)
|+++||+.++||++.||+|+..+.+.. ..++++ +|+|+++.. +..+...++++++++++.++|.|.|+
T Consensus 482 IL~VGRL~p~KGi~~LIeAf~~L~~l~-----~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~ 555 (1050)
T TIGR02468 482 ILALARPDPKKNITTLVKAFGECRPLR-----ELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKH 555 (1050)
T ss_pred EEEEcCCccccCHHHHHHHHHHhHhhc-----cCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCC
Confidence 999999999999999999999986422 125666 466876421 12345678899999999999999998
Q ss_pred c--CCHHHHHHHc----CEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 347 T--LTVAPYLAAI----DVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 347 ~--~~~~~~~~~a----Dv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
. +++.++|+.| |+||+||. .|+||++++||||||+|||+|+.||+.
T Consensus 556 v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~ 607 (1050)
T TIGR02468 556 HKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPV 607 (1050)
T ss_pred CCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcH
Confidence 4 7899999988 69999999 999999999999999999999999975
No 34
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.97 E-value=4.3e-29 Score=249.31 Aligned_cols=307 Identities=16% Similarity=0.156 Sum_probs=195.9
Q ss_pred ccEEEEEeccC----C-------CCChHHHHHHHHHHH--------HhCCC----EEEEEeccCCCCchh-hhhhhhhhh
Q 016053 74 SKLVLLVSHEL----S-------LSGGPLLLMELAFLL--------RGVGT----KVNWITIQKPSEEDE-VIYSLEHKM 129 (396)
Q Consensus 74 ~~kIl~v~~~~----~-------~gG~~~~~~~l~~~L--------~~~G~----~V~vi~~~~~~~~~~-~~~~~~~~~ 129 (396)
.++|++++... . .||...++.+++++| +++|+ +|+|+|...+..... ....++...
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccccc
Confidence 36899888543 1 256568999999975 68999 778999543321111 111112222
Q ss_pred hhcceEEEEcC--ch--------------------------hhhhh--ccCCcEEEEcCchhhHHHHHH-HhcCCCcccc
Q 016053 130 WDRGVQVISAK--GQ--------------------------ETINT--ALKADLIVLNTAVAGKWLDAV-LKEDVPRVLP 178 (396)
Q Consensus 130 ~~~~~~~~~~~--~~--------------------------~~~~~--~~~~DiV~~~~~~~~~~~~~~-~~~~~~~~~~ 178 (396)
...++.++..+ .. +.+.. ..+||+||+|...++.....+ ...++|
T Consensus 335 ~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP---- 410 (784)
T TIGR02470 335 GTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVT---- 410 (784)
T ss_pred CCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCC----
Confidence 22355554432 10 01111 247999999998776654333 334544
Q ss_pred ceeeeeeecccc-------cCc---hhh---------hccccccccceeeccccHHHHHHHHH-----------hhh---
Q 016053 179 NVLWWIHEMRGH-------YFK---LDY---------VKHLPLVAGAMIDSHVTAEYWKNRTR-----------ERL--- 225 (396)
Q Consensus 179 ~vv~~~h~~~~~-------~~~---~~~---------~~~~~~~~~~~~~s~~~~~~~~~~~~-----------~~~--- 225 (396)
.+.+.|..... ++. ..+ ...+..++.+++.+........+... ..+
T Consensus 411 -~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vv 489 (784)
T TIGR02470 411 -QCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVV 489 (784)
T ss_pred -EEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeee
Confidence 56667754211 111 011 12234566677776432111111110 011
Q ss_pred -cc--cCCCEEEEecCCccchhhhhhhhHHHHH-----------hHHHHHHHcCC--CCCCEEEEEEecccCCCCHHHHH
Q 016053 226 -RI--KMPDTYVVHLGNSKELMEVAEDNVAKRV-----------LREHVRESLGV--RNEDLLFAIINSVSRGKGQDLFL 289 (396)
Q Consensus 226 -g~--~~~k~~vI~ngid~~~~~~~~~~~~~~~-----------~~~~~r~~~g~--~~~~~~il~vG~l~~~Kg~~~li 289 (396)
|+ ..+|+.+||+|+|.+.|.+......+.. ++.+.++.+|+ ++++++|+++||+.+.||++.++
T Consensus 490 nGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LI 569 (784)
T TIGR02470 490 HGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLV 569 (784)
T ss_pred cCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHH
Confidence 22 4578999999999998876532211100 12344577776 56788999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEecCCC----ccc---hHHHHHHHHHHhcCCCCcEEEecCc---CCHHHHHH----
Q 016053 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMN----AQT---KFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLA---- 355 (396)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~----~~~---~~~~~l~~~~~~~~l~~~V~~~g~~---~~~~~~~~---- 355 (396)
+|+.++... .++++|+|+|++.. .+. .+.+++.++++++++.++|.|+|.+ .++.++|.
T Consensus 570 eA~~~l~~l-------~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd 642 (784)
T TIGR02470 570 ECYGRSPKL-------RELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIAD 642 (784)
T ss_pred HHHHHhHhh-------CCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhc
Confidence 999876431 15799999998752 111 2446788899999999999999974 45666665
Q ss_pred HcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 356 ~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
++|+||+||. +|+||++++||||||+|||+|+.||++
T Consensus 643 ~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~ 679 (784)
T TIGR02470 643 TKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPL 679 (784)
T ss_pred cCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHH
Confidence 2479999999 999999999999999999999999975
No 35
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.97 E-value=1.7e-29 Score=239.37 Aligned_cols=288 Identities=19% Similarity=0.153 Sum_probs=192.8
Q ss_pred EEEEEeccC--CCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhh-----hhhh---hhcceEE-EEcC-chh
Q 016053 76 LVLLVSHEL--SLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL-----EHKM---WDRGVQV-ISAK-GQE 143 (396)
Q Consensus 76 kIl~v~~~~--~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~-----~~~~---~~~~~~~-~~~~-~~~ 143 (396)
||+++++.. ..||+++.+.+++++|.+.||+|++++.............. .... ....... +... ...
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 588998876 45888999999999999999999999954432211110000 0000 0000000 0000 011
Q ss_pred hhhhccCCcEEEEcCchhhHH---HHHHHhcCCCccccceeeeeeecccccC--chhh----------hcccccccccee
Q 016053 144 TINTALKADLIVLNTAVAGKW---LDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLDY----------VKHLPLVAGAMI 208 (396)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~---~~~~~~~~~~~~~~~vv~~~h~~~~~~~--~~~~----------~~~~~~~~~~~~ 208 (396)
......++|+||+|+...... ...+...+ .+++++.|+....+. .... .......+.+++
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 155 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAARKYG-----IPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHA 155 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHHHHhC-----CCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEE
Confidence 122346899999998433221 12222233 457778887543322 1111 111123333444
Q ss_pred eccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHH
Q 016053 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (396)
Q Consensus 209 ~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~l 288 (396)
.+....... ..+....++.++|||+|.+.+.+... .. .|+.++.++++++|+++|++.+.||++.+
T Consensus 156 ~s~~~~~~~------~~~~~~~~~~vi~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~i~~~G~~~~~K~~~~l 221 (375)
T cd03821 156 TSEQEAAEI------RRLGLKAPIAVIPNGVDIPPFAALPS-------RG-RRRKFPILPDKRIILFLGRLHPKKGLDLL 221 (375)
T ss_pred CCHHHHHHH------HhhCCcccEEEcCCCcChhccCcchh-------hh-hhhhccCCCCCcEEEEEeCcchhcCHHHH
Confidence 442222221 12335567999999999988764321 11 16777888889999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCC
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA 366 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~ 366 (396)
++|+.++.+ ++++++|+++|.+.. .+...++..++++++.++|+|+|++ +++..+|+.||++|+||.
T Consensus 222 i~a~~~l~~-------~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~- 290 (375)
T cd03821 222 IEAFAKLAE-------RFPDWHLVIAGPDEG---GYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSH- 290 (375)
T ss_pred HHHHHHhhh-------hcCCeEEEEECCCCc---chHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccc-
Confidence 999999876 347999999998752 2456666667888999999999997 489999999999999999
Q ss_pred CCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 367 WGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 367 ~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
.|+||++++|||+||+|||+++.+|..
T Consensus 291 -~e~~~~~~~Eama~G~PvI~~~~~~~~ 317 (375)
T cd03821 291 -SENFGIVVAEALACGTPVVTTDKVPWQ 317 (375)
T ss_pred -cCCCCcHHHHHHhcCCCEEEcCCCCHH
Confidence 899999999999999999999999865
No 36
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.97 E-value=1.4e-29 Score=242.46 Aligned_cols=275 Identities=12% Similarity=0.047 Sum_probs=174.0
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhh-hhhh----------hhhh-----hcceEEE-
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI-YSLE----------HKMW-----DRGVQVI- 137 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~-~~~~----------~~~~-----~~~~~~~- 137 (396)
||||+|......||+|+.+.+|++.+.++||+|.+++..+..+..... .... .... ..+...+
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 599999999999999999999999999999999999954433221100 0000 0000 0000001
Q ss_pred EcCch-hhhhhccCCcEEEEcCchhh---HHH-HH-HHhcCCCccccceeeeeeeccccc--------------------
Q 016053 138 SAKGQ-ETINTALKADLIVLNTAVAG---KWL-DA-VLKEDVPRVLPNVLWWIHEMRGHY-------------------- 191 (396)
Q Consensus 138 ~~~~~-~~~~~~~~~DiV~~~~~~~~---~~~-~~-~~~~~~~~~~~~vv~~~h~~~~~~-------------------- 191 (396)
..... +.+.+..+||+||+|...++ ... .. ...........|++|+.|++-..-
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 01111 22335689999999986542 211 11 000011122357999999874110
Q ss_pred ----Cchh--------hh---ccc----cccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHH
Q 016053 192 ----FKLD--------YV---KHL----PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA 252 (396)
Q Consensus 192 ----~~~~--------~~---~~~----~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~ 252 (396)
++.. +. ..+ ...+.+++.|...++. +.+.++ ..++.+||||+|++.+.+.+..
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~----~~~~~~--~~~i~vI~NGid~~~~~~~~~~-- 232 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADA----FNSLYG--PGRCRIINNGIDMATEAILAEL-- 232 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHH----HHHHcC--CCCEEEeCCCcCcccccccccc--
Confidence 1000 00 001 1123345555544443 332333 4679999999997543221110
Q ss_pred HHHhHHHHHHHcCCCCCCEEEEEEecc--cCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHH
Q 016053 253 KRVLREHVRESLGVRNEDLLFAIINSV--SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330 (396)
Q Consensus 253 ~~~~~~~~r~~~g~~~~~~~il~vG~l--~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~ 330 (396)
...+ .++++++|+++|+. .+.||++.+++|+.++. ++++|+|+|++.+. .
T Consensus 233 -----~~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~----------~~~~L~ivG~g~~~-----~---- 284 (405)
T PRK10125 233 -----PPVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG----------DKIELHTFGKFSPF-----T---- 284 (405)
T ss_pred -----cccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC----------CCeEEEEEcCCCcc-----c----
Confidence 0001 13566789999994 37899999999998752 58999999987411 0
Q ss_pred HHHhcCCCCcEEEecCc---CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 331 YVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 331 ~~~~~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
.+++.++|.. +++.++|++||+||+||. .|+||++++||||||+|||+|++||..
T Consensus 285 -------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~ 342 (405)
T PRK10125 285 -------AGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAR 342 (405)
T ss_pred -------ccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChH
Confidence 1468888865 568999999999999999 999999999999999999999999965
No 37
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.97 E-value=6.9e-29 Score=238.72 Aligned_cols=275 Identities=16% Similarity=0.198 Sum_probs=179.3
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch-------------
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------- 142 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 142 (396)
|||||++.++ -.+..|+++|.++||+|++++......... |++++.....
T Consensus 1 ~il~~~~~~p-----~~~~~la~~L~~~G~~v~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~ 63 (396)
T cd03818 1 RILFVHQNFP-----GQFRHLAPALAAQGHEVVFLTEPNAAPPPG------------GVRVVRYRPPRGPTSGTHPYLRE 63 (396)
T ss_pred CEEEECCCCc-----hhHHHHHHHHHHCCCEEEEEecCCCCCCCC------------CeeEEEecCCCCCCCCCCccchh
Confidence 5888886443 246789999999999999999554421110 3444322111
Q ss_pred ---------------hhh-hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeee------eecccccC-----c--
Q 016053 143 ---------------ETI-NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWI------HEMRGHYF-----K-- 193 (396)
Q Consensus 143 ---------------~~~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~------h~~~~~~~-----~-- 193 (396)
..+ .+..+||+||+|.......+. +..+|. .+++.+. |.....+. .
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l---~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (396)
T cd03818 64 FEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFL---KDVWPD--APLIGYFEFYYRAEGADVGFDPEFPPSLD 138 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhH---HHhCCC--CCEEEEEeeeecCCCCCCCCCCCCCCchh
Confidence 011 133689999999865433221 111221 2233322 22111110 1
Q ss_pred --hhh-------hccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHc
Q 016053 194 --LDY-------VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESL 264 (396)
Q Consensus 194 --~~~-------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~ 264 (396)
... ...+..+|.+++.|....+.+.+ .+ .+++.|||||+|.+.|.+.+.. ....+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~----~~---~~ki~vI~ngvd~~~f~~~~~~------~~~~~~~~ 205 (396)
T cd03818 139 DALRLRNRNALILLALAQADAGVSPTRWQRSTFPA----EL---RSRISVIHDGIDTDRLRPDPQA------RLRLPNGR 205 (396)
T ss_pred HHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcH----hh---ccceEEeCCCccccccCCCchh------hhcccccc
Confidence 000 12345778888888776665433 22 2679999999999988754311 11233334
Q ss_pred CCCCCCEEEEEEec-ccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc-------cchHHHHHHHHHH-hc
Q 016053 265 GVRNEDLLFAIINS-VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-------QTKFESELRNYVM-QK 335 (396)
Q Consensus 265 g~~~~~~~il~vG~-l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-------~~~~~~~l~~~~~-~~ 335 (396)
++.+++++|+|+|| +.+.||++.+++|++++.+ +.++++|+|+|++... ..++.+.+.+... ++
T Consensus 206 ~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~-------~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T cd03818 206 VLTPGDEVITFVARNLEPYRGFHVFMRALPRLLR-------ARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRL 278 (396)
T ss_pred cCCCCCeEEEEECCCcccccCHHHHHHHHHHHHH-------HCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhccc
Confidence 45677889999997 9999999999999998865 3389999999974311 0112223222222 22
Q ss_pred CCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 336 ~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
+ .++|+|+|++ +++.++|+.||++|+||. .|++|++++||||||+|||+|+.||.++
T Consensus 279 ~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e 337 (396)
T cd03818 279 D-LSRVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVRE 337 (396)
T ss_pred C-cceEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchh
Confidence 2 4789999986 689999999999999999 9999999999999999999999998754
No 38
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.97 E-value=9.5e-29 Score=237.67 Aligned_cols=278 Identities=21% Similarity=0.175 Sum_probs=194.9
Q ss_pred CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc---------------------hhh
Q 016053 86 LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---------------------QET 144 (396)
Q Consensus 86 ~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~ 144 (396)
.||+++++.+++++|+++||+|+|++......... ......++.+..... ...
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPP------IVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLR 93 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCC------ccccccceEEEecccccccCCChhhcchhHHHHHHHHHH
Confidence 48999999999999999999999999543321110 011122333322211 001
Q ss_pred hhhcc--CCcEEEEcCchhhHHHHHH-HhcCCCccccceeeeeeecccccCch--------------hhhccccccccce
Q 016053 145 INTAL--KADLIVLNTAVAGKWLDAV-LKEDVPRVLPNVLWWIHEMRGHYFKL--------------DYVKHLPLVAGAM 207 (396)
Q Consensus 145 ~~~~~--~~DiV~~~~~~~~~~~~~~-~~~~~~~~~~~vv~~~h~~~~~~~~~--------------~~~~~~~~~~~~~ 207 (396)
..... +||+||+|....+.....+ ...+ .+++++.|+........ .....+..++.++
T Consensus 94 ~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~-----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 168 (398)
T cd03800 94 FLRREGGRPDLIHAHYWDSGLVALLLARRLG-----IPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVI 168 (398)
T ss_pred HHHhcCCCccEEEEecCccchHHHHHHhhcC-----CceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEE
Confidence 11223 9999999986544433322 2233 34677778653211100 0112345677777
Q ss_pred eeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHH
Q 016053 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL 287 (396)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~ 287 (396)
+.|......+.+ .++.+..++.+||||+|.+.+.+.... ...++.++.++++++|+++||+.+.||++.
T Consensus 169 ~~s~~~~~~~~~----~~~~~~~~~~vi~ng~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ 237 (398)
T cd03800 169 ASTPQEAEELYS----LYGAYPRRIRVVPPGVDLERFTPYGRA-------EARRARLLRDPDKPRILAVGRLDPRKGIDT 237 (398)
T ss_pred EcCHHHHHHHHH----HccccccccEEECCCCCccceecccch-------hhHHHhhccCCCCcEEEEEcccccccCHHH
Confidence 777766655543 334455669999999999877654221 112555667778899999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEecCCCcc-chHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecC
Q 016053 288 FLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ-TKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (396)
Q Consensus 288 li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~-~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (396)
+++|+..+.+. .++++|+++|++.... ..+...++++++++++.++|.|+|++ +++.++|+.||++++||
T Consensus 238 ll~a~~~l~~~-------~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps 310 (398)
T cd03800 238 LIRAYAELPEL-------RERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPA 310 (398)
T ss_pred HHHHHHHHHHh-------CCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecc
Confidence 99999998652 3789999999886432 22345678888999999999999996 68999999999999999
Q ss_pred CCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 365 QAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 365 ~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
. .|+||++++|||+||+|||+++.+|.+
T Consensus 311 ~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~ 338 (398)
T cd03800 311 L--YEPFGLTALEAMACGLPVVATAVGGPR 338 (398)
T ss_pred c--ccccCcHHHHHHhcCCCEEECCCCCHH
Confidence 9 999999999999999999999998864
No 39
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.6e-28 Score=232.47 Aligned_cols=277 Identities=24% Similarity=0.191 Sum_probs=194.2
Q ss_pred EEEEEeccCC--CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcC---------c-hh
Q 016053 76 LVLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK---------G-QE 143 (396)
Q Consensus 76 kIl~v~~~~~--~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~ 143 (396)
|||++++... .||.++++.+++++|.++||+|++++.......... ...+..+.... . ..
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDE--------ERNGHRVIRAPSLLNVASTPFSPS 72 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhh--------hccCceEEEeecccccccccccHH
Confidence 6889987755 489999999999999999999999995543211110 11111111110 0 00
Q ss_pred h---h-hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccc------cCchhhhccccccccceeecccc
Q 016053 144 T---I-NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH------YFKLDYVKHLPLVAGAMIDSHVT 213 (396)
Q Consensus 144 ~---~-~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~------~~~~~~~~~~~~~~~~~~~s~~~ 213 (396)
. + ....++|+||+|.+............ ...+.+.+.|+.... .+.......+..++.+++.|...
T Consensus 73 ~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~----~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~ 148 (357)
T cd03795 73 FFKQLKKLAKKADVIHLHFPNPLADLALLLLP----RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNY 148 (357)
T ss_pred HHHHHHhcCCCCCEEEEecCcchHHHHHHHhc----cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHH
Confidence 1 1 23578999999986544332222221 124567777754211 01111223456777788777776
Q ss_pred HHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHH
Q 016053 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (396)
Q Consensus 214 ~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~ 293 (396)
.+.+.. .... ..++.+||||+|.+.+.+.... +. .....+.+.+.|+++|++.+.||++.+++|++
T Consensus 149 ~~~~~~----~~~~-~~~~~~i~~gi~~~~~~~~~~~------~~---~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~ 214 (357)
T cd03795 149 AETSPV----LRRF-RDKVRVIPLGLDPARYPRPDAL------EE---AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAA 214 (357)
T ss_pred HHHHHH----hcCC-ccceEEecCCCChhhcCCcchh------hh---HhhcCCCCCcEEEEecccccccCHHHHHHHHH
Confidence 654432 2222 3679999999999877643210 00 22334567789999999999999999999999
Q ss_pred HHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCc
Q 016053 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (396)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~f 371 (396)
++ .+++|+|+|+|+ ..+.+++.++++++.++|+|+|++ +++..+|+.||++++||....|+|
T Consensus 215 ~l-----------~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~ 278 (357)
T cd03795 215 AL-----------PDAPLVIVGEGP-----LEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAF 278 (357)
T ss_pred hc-----------cCcEEEEEeCCh-----hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCccccccc
Confidence 76 379999999986 677888999889999999999997 569999999999999996225999
Q ss_pred cHHHHHHHhcCCCEEEcCCCCCC
Q 016053 372 GRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 372 g~~~lEAma~G~PVI~t~~gG~~ 394 (396)
|++++|||+||+|||+|+.+|..
T Consensus 279 g~~~~Ea~~~g~Pvi~~~~~~~~ 301 (357)
T cd03795 279 GIVLLEAMAFGKPVISTEIGTGG 301 (357)
T ss_pred chHHHHHHHcCCCEEecCCCCch
Confidence 99999999999999999999864
No 40
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.97 E-value=1.4e-28 Score=237.41 Aligned_cols=292 Identities=12% Similarity=0.043 Sum_probs=194.1
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchh---------
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--------- 143 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (396)
+.+||++++. ...|++.++.+++++|.++||+|++++...+.. ..+.....|+.++......
T Consensus 2 ~~~~~~~~~~--~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVL--GDIGRSPRMQYHALSLAKHGWKVDLVGYLETPP-------HDEILSNPNITIHPLPPPPQRLNKLPFL 72 (415)
T ss_pred CccEEEEEEe--cccCCCHHHHHHHHHHHhcCceEEEEEecCCCC-------CHHHhcCCCEEEEECCCCccccccchHH
Confidence 3467888775 346777788999999999999999999654321 1111334566665543221
Q ss_pred ----------------hhhhccCCcEEEEcCchhh--HHHHH--HHhcCCCccccceeeeeeeccccc----C--ch---
Q 016053 144 ----------------TINTALKADLIVLNTAVAG--KWLDA--VLKEDVPRVLPNVLWWIHEMRGHY----F--KL--- 194 (396)
Q Consensus 144 ----------------~~~~~~~~DiV~~~~~~~~--~~~~~--~~~~~~~~~~~~vv~~~h~~~~~~----~--~~--- 194 (396)
.+....++|+||+|.+... .+... ....+ .+++++.|+..... . ..
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~-----~~~V~~~h~~~~~~~~~~~~~~~~~~ 147 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRR-----TKLIIDWHNYGYTILALKLGENHPLV 147 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhC-----CeEEEEcCCchHHHHhcccCCCCHHH
Confidence 0123468999999874432 11121 12223 45777888752100 0 00
Q ss_pred hh-----hccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHH-------
Q 016053 195 DY-----VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRE------- 262 (396)
Q Consensus 195 ~~-----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~------- 262 (396)
.. ...++.++.+++.|..+.+++.+ ++.+.+++.|||||. .+.|.+.+.... +...++
T Consensus 148 ~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~-----~~~~~~ki~vI~Ng~-~~~f~p~~~~~~----~~~~~~~~~~~~~ 217 (415)
T cd03816 148 RLAKWYEKLFGRLADYNLCVTKAMKEDLQQ-----FNNWKIRATVLYDRP-PEQFRPLPLEEK----HELFLKLAKTFLT 217 (415)
T ss_pred HHHHHHHHHHhhcCCEeeecCHHHHHHHHh-----hhccCCCeeecCCCC-HHHceeCcHHHH----HHHHHhccccccc
Confidence 01 12335688888888888777643 467789999999994 455554332111 111111
Q ss_pred ------HcCC-CCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhc
Q 016053 263 ------SLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (396)
Q Consensus 263 ------~~g~-~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (396)
..++ +++..+++++||+.+.||++.+++|++.+.+...+. .++|+++|+|+|+|+ .+++++++++++
T Consensus 218 ~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~-~~~~~i~l~ivG~G~-----~~~~l~~~~~~~ 291 (415)
T cd03816 218 RELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATG-PKLPKLLCIITGKGP-----LKEKYLERIKEL 291 (415)
T ss_pred cccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhccc-ccCCCEEEEEEecCc-----cHHHHHHHHHHc
Confidence 1122 244567888999999999999999999986532110 023689999999996 788999999999
Q ss_pred CCCCcEEEecCc--CCHHHHHHHcCEEEecCCC-CCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 336 KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA-WGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 336 ~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~-~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
++++.+.+.|++ +++.++|++||++|.|+.. ..|++|++++||||||+|||+|+.||..
T Consensus 292 ~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~ 353 (415)
T cd03816 292 KLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCID 353 (415)
T ss_pred CCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHH
Confidence 997544455654 8999999999999975321 1588999999999999999999998764
No 41
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=7.1e-29 Score=236.10 Aligned_cols=271 Identities=16% Similarity=0.103 Sum_probs=193.1
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEE-----------------E
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVI-----------------S 138 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 138 (396)
+|+++.+...++ +++++.++++.|. |+++++++........ ......++..+ .
T Consensus 1 ~~~~~~~~~~~~-~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (367)
T cd05844 1 RVLIFRPLLLAP-SETFVRNQAEALR--RFRPVYVGGRRLGPAP-------LGALAVRLADLAGGKAGLRLGALRLLTGS 70 (367)
T ss_pred CEEEEeCCCCCC-chHHHHHHHHhcc--cCCcEEEEeeccCCCC-------CcccceeeeecccchhHHHHHHHHhcccc
Confidence 467777655443 7899999999995 7888888744322100 00011111111 1
Q ss_pred cCchhhhhhccCCcEEEEcCchhhHHHH-HHHhcCCCccccceeeeeeecccccCc------------hhhhcccccccc
Q 016053 139 AKGQETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAG 205 (396)
Q Consensus 139 ~~~~~~~~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~vv~~~h~~~~~~~~------------~~~~~~~~~~~~ 205 (396)
......+.+..+||+||+|....+.... .+...+ .+++++.|+....... ......++..+.
T Consensus 71 ~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~-----~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 145 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARRLG-----VPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAAL 145 (367)
T ss_pred ccHHHHHHHhhCCCEEEeccCchHHHHHHHHHHcC-----CCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCE
Confidence 1112233456899999999765444333 334445 3477788864311111 111233456788
Q ss_pred ceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCH
Q 016053 206 AMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ 285 (396)
Q Consensus 206 ~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~ 285 (396)
+++.|....+.+. .+|++.+++.++|||+|.+.+.+.. ...++..++++|++.+.||+
T Consensus 146 ii~~s~~~~~~~~-----~~~~~~~~i~vi~~g~d~~~~~~~~-----------------~~~~~~~i~~~G~~~~~K~~ 203 (367)
T cd05844 146 FIAVSQFIRDRLL-----ALGFPPEKVHVHPIGVDTAKFTPAT-----------------PARRPPRILFVGRFVEKKGP 203 (367)
T ss_pred EEECCHHHHHHHH-----HcCCCHHHeEEecCCCCHHhcCCCC-----------------CCCCCcEEEEEEeeccccCh
Confidence 8888877766554 3377778899999999988775321 12456789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEec
Q 016053 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (396)
Q Consensus 286 ~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~p 363 (396)
+.+++|++.+.+ ++++++|+++|+|+ +.++++++++++++.++|+|+|.+ +++.++|+.||++|+|
T Consensus 204 ~~li~a~~~l~~-------~~~~~~l~ivG~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~p 271 (367)
T cd05844 204 LLLLEAFARLAR-------RVPEVRLVIIGDGP-----LLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQP 271 (367)
T ss_pred HHHHHHHHHHHH-------hCCCeEEEEEeCch-----HHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEEC
Confidence 999999998865 33799999999875 778899999999999999999997 6799999999999999
Q ss_pred CCC----CCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 364 SQA----WGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 364 S~~----~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
|.. ..|+||++++|||+||+|||+++.+|..+
T Consensus 272 s~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e 307 (367)
T cd05844 272 SVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPE 307 (367)
T ss_pred cccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchh
Confidence 972 14999999999999999999999998764
No 42
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=6.2e-29 Score=235.05 Aligned_cols=278 Identities=17% Similarity=0.096 Sum_probs=200.3
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEE-cC---------chhhh
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-AK---------GQETI 145 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~ 145 (396)
|||++++..+.+ +++++.+++++|.++||+|++++.......... ............ .. .....
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVH-----PEDRAELARTRYLARSLALLAQALVLARE 74 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCccccccc-----ccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 589999876554 789999999999999999999995443211000 000000000000 00 01112
Q ss_pred hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCch--hhhccccccccceeeccccHHHHHHHHHh
Q 016053 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL--DYVKHLPLVAGAMIDSHVTAEYWKNRTRE 223 (396)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 223 (396)
.+..++|+||+|................ ..+++++.|......... .....++.++.+++.+....+.+.+
T Consensus 75 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~---- 147 (355)
T cd03799 75 LRRLGIDHIHAHFGTTPATVAMLASRLG---GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIR---- 147 (355)
T ss_pred HHhcCCCEEEECCCCchHHHHHHHHHhc---CCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHH----
Confidence 2347899999998643332222222111 245777788653222222 3445566788888888877776554
Q ss_pred hhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhc
Q 016053 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK 303 (396)
Q Consensus 224 ~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~ 303 (396)
.++....++.++|||+|.+.+.+.. .....+++.|+++|++.+.||++.+++++.++.+
T Consensus 148 ~~~~~~~~~~vi~~~~d~~~~~~~~---------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~------ 206 (355)
T cd03799 148 LLGCDPDKIHVVHCGVDLERFPPRP---------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKD------ 206 (355)
T ss_pred hcCCCcccEEEEeCCcCHHHcCCcc---------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhh------
Confidence 3466778899999999988775431 1123567899999999999999999999998765
Q ss_pred cCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCC------CCccHHH
Q 016053 304 LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG------ECFGRIT 375 (396)
Q Consensus 304 ~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~------E~fg~~~ 375 (396)
++++++|+++|.+. ..+.+++.++++++.++|++.|.. +++..+|++||++++||. . |+||+++
T Consensus 207 -~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~--~~~~~~~e~~~~~~ 278 (355)
T cd03799 207 -RGIDFRLDIVGDGP-----LRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSV--TAADGDREGLPVVL 278 (355)
T ss_pred -cCCCeEEEEEECCc-----cHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecce--ecCCCCccCccHHH
Confidence 33799999999986 667888999999999999999997 789999999999999999 7 9999999
Q ss_pred HHHHhcCCCEEEcCCCCCCC
Q 016053 376 IEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 376 lEAma~G~PVI~t~~gG~~~ 395 (396)
+|||+||+|||+++.||.+.
T Consensus 279 ~Ea~a~G~Pvi~~~~~~~~~ 298 (355)
T cd03799 279 MEAMAMGLPVISTDVSGIPE 298 (355)
T ss_pred HHHHHcCCCEEecCCCCcch
Confidence 99999999999999988653
No 43
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.5e-28 Score=233.32 Aligned_cols=272 Identities=15% Similarity=0.182 Sum_probs=183.4
Q ss_pred EEEEEecc---CCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchh---------
Q 016053 76 LVLLVSHE---LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--------- 143 (396)
Q Consensus 76 kIl~v~~~---~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (396)
||++++.. ...||+++++.+++++|.++||+|+|++........ .....|++++......
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~~~~~~ 72 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK--------ETEYNGVRLIHIPAPEIGGLGTIIY 72 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc--------ccccCCceEEEcCCCCccchhhhHH
Confidence 57888654 233999999999999999999999999955432110 1122345544332110
Q ss_pred ---hhh----hccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc--Cc---hhhh-----ccccccccc
Q 016053 144 ---TIN----TALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FK---LDYV-----KHLPLVAGA 206 (396)
Q Consensus 144 ---~~~----~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~--~~---~~~~-----~~~~~~~~~ 206 (396)
.+. ...++|+||...+........+...+ .+++++.|+..... +. .... ..+...+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 147 (363)
T cd04955 73 DILAILHALFVKRDIDHVHALGPAIAPFLPLLRLKG-----KKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRL 147 (363)
T ss_pred HHHHHHHHHhccCCeEEEEecCccHHHHHHHHHhcC-----CCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEE
Confidence 111 13445555555444333333333333 45788888753110 00 1111 123466777
Q ss_pred eeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHH
Q 016053 207 MIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQD 286 (396)
Q Consensus 207 ~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~ 286 (396)
++.|....+.+.+ .+|.+ . .+||||+|...+.+ +...++.++++++. .++++|++.+.||++
T Consensus 148 i~~s~~~~~~~~~----~~~~~--~-~~i~ngv~~~~~~~----------~~~~~~~~~~~~~~-~i~~~G~~~~~Kg~~ 209 (363)
T cd04955 148 IADSPGIKEYLKE----KYGRD--S-TYIPYGADHVVSSE----------EDEILKKYGLEPGR-YYLLVGRIVPENNID 209 (363)
T ss_pred EeCCHHHHHHHHH----hcCCC--C-eeeCCCcChhhcch----------hhhhHHhcCCCCCc-EEEEEecccccCCHH
Confidence 7777777766543 45543 2 89999999877643 12234556665544 578999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHH-hcCCCCcEEEecCc--CCHHHHHHHcCEEEec
Q 016053 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQN 363 (396)
Q Consensus 287 ~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~p 363 (396)
.+++|++++. .+++|+++|+++. ...+.+.+. +++..++|+|+|++ +++..+|.+||++++|
T Consensus 210 ~li~a~~~l~----------~~~~l~ivG~~~~-----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 210 DLIEAFSKSN----------SGKKLVIVGNADH-----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLH 274 (363)
T ss_pred HHHHHHHhhc----------cCceEEEEcCCCC-----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeC
Confidence 9999999863 3799999999852 223333333 56778899999986 6788999999999999
Q ss_pred CCCCC-CCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 364 SQAWG-ECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 364 S~~~~-E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
|. . |+||++++|||+||+|||+|+.||..+
T Consensus 275 s~--~~e~~~~~~~EAma~G~PvI~s~~~~~~e 305 (363)
T cd04955 275 GH--SVGGTNPSLLEAMAYGCPVLASDNPFNRE 305 (363)
T ss_pred Cc--cCCCCChHHHHHHHcCCCEEEecCCccce
Confidence 99 6 999999999999999999999998653
No 44
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.97 E-value=1.4e-28 Score=233.10 Aligned_cols=287 Identities=20% Similarity=0.216 Sum_probs=201.8
Q ss_pred EEEEEeccCCC--CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhh-----hcc--eEEEEcCchhhhh
Q 016053 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW-----DRG--VQVISAKGQETIN 146 (396)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~ 146 (396)
|||+++....+ ||++..+.+++++|.+.||+|++++................... ... .............
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 58888876543 88889999999999999999999995443211110000000000 000 0000001112234
Q ss_pred hccCCcEEEEcCchhhHHHHH--HHhcCCCccccceeeeeeecccccC----------c-----hhhhccccccccceee
Q 016053 147 TALKADLIVLNTAVAGKWLDA--VLKEDVPRVLPNVLWWIHEMRGHYF----------K-----LDYVKHLPLVAGAMID 209 (396)
Q Consensus 147 ~~~~~DiV~~~~~~~~~~~~~--~~~~~~~~~~~~vv~~~h~~~~~~~----------~-----~~~~~~~~~~~~~~~~ 209 (396)
...+||+||++++........ ..+.+ .+++++.|+....+. . ......+..++.+++.
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 155 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVARKLG-----IPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAP 155 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHHHcC-----CCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEec
Confidence 558999999998754332222 22233 457778886432110 0 0112334567777777
Q ss_pred ccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHH
Q 016053 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (396)
Q Consensus 210 s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li 289 (396)
+....+.+. .++.. .++.++|||+|...+.+.. ....++.++..++++.|+++|++.+.||++.++
T Consensus 156 s~~~~~~~~-----~~~~~-~~~~vi~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~ 221 (374)
T cd03817 156 SEKIADLLR-----EYGVK-RPIEVIPTGIDLDRFEPVD--------GDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLI 221 (374)
T ss_pred cHHHHHHHH-----hcCCC-CceEEcCCccchhccCccc--------hhHHHHhcCCCCCCeEEEEEeeeecccCHHHHH
Confidence 777655544 34444 4599999999998876532 122366777778889999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCC
Q 016053 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAW 367 (396)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~ 367 (396)
++++.+.+. +++++|+++|.+. ..+.+++.++++++.++|.|+|.+ +++..+|+.||++++||.
T Consensus 222 ~~~~~~~~~-------~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~-- 287 (374)
T cd03817 222 RAFARLLKE-------EPDVKLVIVGDGP-----EREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFAST-- 287 (374)
T ss_pred HHHHHHHHh-------CCCeEEEEEeCCc-----hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEeccc--
Confidence 999988652 3789999999986 778888999889999999999987 789999999999999999
Q ss_pred CCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 368 GECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 368 ~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
.|++|++++|||+||+|||+++.|+.+.
T Consensus 288 ~e~~~~~~~Ea~~~g~PvI~~~~~~~~~ 315 (374)
T cd03817 288 TETQGLVLLEAMAAGLPVVAVDAPGLPD 315 (374)
T ss_pred ccCcChHHHHHHHcCCcEEEeCCCChhh
Confidence 9999999999999999999999998653
No 45
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.97 E-value=2.4e-28 Score=228.92 Aligned_cols=269 Identities=19% Similarity=0.174 Sum_probs=195.4
Q ss_pred EEEEEeccCC-CCChHHHHHHHHHHHHhCCCEEEEEeccCCC-CchhhhhhhhhhhhhcceE----------EEEcCchh
Q 016053 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPS-EEDEVIYSLEHKMWDRGVQ----------VISAKGQE 143 (396)
Q Consensus 76 kIl~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 143 (396)
||+++++... .||+++.+.+++++|.+.||+|++++..... .... .........+. ........
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE----LDPKIKVIDLGDKRDSKLLARFKKLRRLR 76 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc----cCCccceeecccccccchhccccchHHHH
Confidence 5888888877 7999999999999999999999999954432 1000 11111000000 01111223
Q ss_pred hhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchh-----hhccccccccceeeccccHHHHH
Q 016053 144 TINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-----YVKHLPLVAGAMIDSHVTAEYWK 218 (396)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~ 218 (396)
.+.+..+||+||++.+....++. ....+. .+++.+.|+......... ....++.++.+++.|......
T Consensus 77 ~~l~~~~~d~i~~~~~~~~~~~~-~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~-- 149 (348)
T cd03820 77 KLLKNNKPDVVISFLTSLLTFLA-SLGLKI----VKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRAL-- 149 (348)
T ss_pred HhhcccCCCEEEEcCchHHHHHH-HHhhcc----ccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHH--
Confidence 44456899999999876222222 222221 357777786543222211 233456788888888776511
Q ss_pred HHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHH
Q 016053 219 NRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLEL 298 (396)
Q Consensus 219 ~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~ 298 (396)
.......++.++|||++...+... ...+++.++++|++.+.||++.++++++++.+
T Consensus 150 -----~~~~~~~~~~vi~~~~~~~~~~~~------------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~- 205 (348)
T cd03820 150 -----YYKKFNKNVVVIPNPLPFPPEEPS------------------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAK- 205 (348)
T ss_pred -----hhccCCCCeEEecCCcChhhcccc------------------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHh-
Confidence 223456789999999998765421 13567899999999999999999999999865
Q ss_pred HHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHH
Q 016053 299 IKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (396)
Q Consensus 299 ~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEA 378 (396)
+.++++|+|+|++. +.+.+++.++++++.++|.+.|..+++.++|+.||++++||. .|+||++++||
T Consensus 206 ------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~--~e~~~~~~~Ea 272 (348)
T cd03820 206 ------KHPDWKLRIVGDGP-----EREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSR--FEGFPMVLLEA 272 (348)
T ss_pred ------cCCCeEEEEEeCCC-----CHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCcc--ccccCHHHHHH
Confidence 34899999999986 667788889999999999999999999999999999999999 89999999999
Q ss_pred HhcCCCEEEcCCCC
Q 016053 379 MAFQLPVLVLSELH 392 (396)
Q Consensus 379 ma~G~PVI~t~~gG 392 (396)
|+||+|||+++.+|
T Consensus 273 ~a~G~Pvi~~~~~~ 286 (348)
T cd03820 273 MAFGLPVISFDCPT 286 (348)
T ss_pred HHcCCCEEEecCCC
Confidence 99999999999765
No 46
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=1.7e-28 Score=232.60 Aligned_cols=285 Identities=18% Similarity=0.133 Sum_probs=191.1
Q ss_pred EEEEEeccCC-CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEc------Cchhhhhhc
Q 016053 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA------KGQETINTA 148 (396)
Q Consensus 76 kIl~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (396)
||+|+++..+ .||.++++.+++++|.+.||+|++++........... . .......... .......+.
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYG---G---EQEVVRVIVLDNPLDYRRAARAIRL 74 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCC---C---cccceeeeecCCchhHHHHHHHHhh
Confidence 6899998876 5999999999999999999999999844332111100 0 0011111111 112234456
Q ss_pred cCCcEEEEcCch---hhHHHHHHHhcCCCccccceeeeeeeccccc----CchhhhccccccccceeeccccHHHHHHHH
Q 016053 149 LKADLIVLNTAV---AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY----FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (396)
Q Consensus 149 ~~~DiV~~~~~~---~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (396)
.+||+||++... .......+... ......+++++.|+..... ........++.++.+++.| .+...+..
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s---~~~~~~~~ 150 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLL-LRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMS---SELLRALL 150 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHH-HhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEee---HHHHHHHH
Confidence 899999997621 11111111110 0011256888999862111 1122334556788888887 22222211
Q ss_pred HhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHh
Q 016053 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (396)
Q Consensus 222 ~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~ 301 (396)
. .. ...++.+||||+|...+..... .++.....+.++|+++|++.+.||++.+++|++++.+
T Consensus 151 ~-~~--~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~---- 212 (366)
T cd03822 151 L-RA--YPEKIAVIPHGVPDPPAEPPES-----------LKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVA---- 212 (366)
T ss_pred h-hc--CCCcEEEeCCCCcCcccCCchh-----------hHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHh----
Confidence 1 11 1468999999999876643211 1334445678999999999999999999999998875
Q ss_pred hccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC-c--CCHHHHHHHcCEEEecCCCCCC--CccHHHH
Q 016053 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T--LTVAPYLAAIDVLVQNSQAWGE--CFGRITI 376 (396)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-~--~~~~~~~~~aDv~v~pS~~~~E--~fg~~~l 376 (396)
++++++|+++|++.+..........++++++++.++|.|+|. . +++.++|+.||++++||. .| ++|++++
T Consensus 213 ---~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~--~e~~~~~~~~~ 287 (366)
T cd03822 213 ---KHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYR--SADQTQSGVLA 287 (366)
T ss_pred ---hCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEeccc--ccccccchHHH
Confidence 347999999999863321111111134788899999999987 4 789999999999999999 89 9999999
Q ss_pred HHHhcCCCEEEcCCCCC
Q 016053 377 EAMAFQLPVLVLSELHP 393 (396)
Q Consensus 377 EAma~G~PVI~t~~gG~ 393 (396)
|||+||+|||+++.||.
T Consensus 288 Ea~a~G~PvI~~~~~~~ 304 (366)
T cd03822 288 YAIGFGKPVISTPVGHA 304 (366)
T ss_pred HHHHcCCCEEecCCCCh
Confidence 99999999999999983
No 47
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.96 E-value=6.8e-28 Score=228.83 Aligned_cols=261 Identities=19% Similarity=0.174 Sum_probs=183.9
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcEE
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (396)
|||++++.....||+++....++++|.++||+|++++.... .........++|+|
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-------------------------~~~~~~~~~~~dii 55 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-------------------------ALISKIEIINADIV 55 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-------------------------hhhhChhcccCCEE
Confidence 58999998777799999999999999999999999995532 11123345789999
Q ss_pred EEcCchhhHH-HHHHHhcCCCccccceeeeeeeccccc----Cch-------------------------h-hh---ccc
Q 016053 155 VLNTAVAGKW-LDAVLKEDVPRVLPNVLWWIHEMRGHY----FKL-------------------------D-YV---KHL 200 (396)
Q Consensus 155 ~~~~~~~~~~-~~~~~~~~~~~~~~~vv~~~h~~~~~~----~~~-------------------------~-~~---~~~ 200 (396)
|+|......+ ...+.+. . ...++++++|+..... +.. . +. ..+
T Consensus 56 h~~~~~~~~~~~~~~~~~-~--~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (365)
T cd03825 56 HLHWIHGGFLSIEDLSKL-L--DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAW 132 (365)
T ss_pred EEEccccCccCHHHHHHH-H--cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHh
Confidence 9987433221 1111121 0 1245788888752110 000 0 00 000
Q ss_pred -cccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecc
Q 016053 201 -PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV 279 (396)
Q Consensus 201 -~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l 279 (396)
...+.+++.+....+.+. +.+.++..++.++|||+|.+.+.+.. +...++.+++++++.++++.|+.
T Consensus 133 ~~~~~~~v~~s~~~~~~~~----~~~~~~~~~~~vi~ngi~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~ 200 (365)
T cd03825 133 ADLNLTIVAPSRWLADCAR----SSSLFKGIPIEVIPNGIDTTIFRPRD--------KREARKRLGLPADKKIILFGAVG 200 (365)
T ss_pred ccCCcEEEehhHHHHHHHH----hccccCCCceEEeCCCCcccccCCCc--------HHHHHHHhCCCCCCeEEEEEecC
Confidence 122234444444444333 23346678899999999998875432 34567788888888888888777
Q ss_pred cC--CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcC---CHHHHH
Q 016053 280 SR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL---TVAPYL 354 (396)
Q Consensus 280 ~~--~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~---~~~~~~ 354 (396)
.. .||++.++++++.+.++ ..++++++++|++. .... .++.++|+++|+.+ ++.++|
T Consensus 201 ~~~~~K~~~~ll~a~~~l~~~------~~~~~~~~i~G~~~-----~~~~-------~~~~~~v~~~g~~~~~~~~~~~~ 262 (365)
T cd03825 201 GTDPRKGFDELIEALKRLAER------WKDDIELVVFGASD-----PEIP-------PDLPFPVHYLGSLNDDESLALIY 262 (365)
T ss_pred CCccccCHHHHHHHHHHhhhc------cCCCeEEEEeCCCc-----hhhh-------ccCCCceEecCCcCCHHHHHHHH
Confidence 65 89999999999987642 03789999999875 1111 14557899999975 688999
Q ss_pred HHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 355 ~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
+.||++++||. .|+||++++|||+||+|||+++.||...
T Consensus 263 ~~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e 301 (365)
T cd03825 263 SAADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPD 301 (365)
T ss_pred HhCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChh
Confidence 99999999999 9999999999999999999999998754
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.96 E-value=2.5e-27 Score=223.67 Aligned_cols=266 Identities=19% Similarity=0.174 Sum_probs=184.3
Q ss_pred EEEEEeccCCC---CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEE--------------
Q 016053 76 LVLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-------------- 138 (396)
Q Consensus 76 kIl~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 138 (396)
|||++++.... ||+++++.+++++|.++||+|++++.......... .........
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 72 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDK--------EVIGVVVYGRPIDEVLRSALPRD 72 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccc--------ccccceeeccccccccCCCchhh
Confidence 58899876543 78899999999999999999999995433211100 000000000
Q ss_pred ------------cCchhhhhhccCCcEEEEcCchhh--HHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccc
Q 016053 139 ------------AKGQETINTALKADLIVLNTAVAG--KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVA 204 (396)
Q Consensus 139 ------------~~~~~~~~~~~~~DiV~~~~~~~~--~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~ 204 (396)
....+.+.+..+||+||++.+... .....+...+ .++++++|+.. +............+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~-----~~~i~~~hd~~--~~~~~~~~~~~~~d 145 (359)
T cd03823 73 LFHLSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRG-----IPIVLTLHDYW--LICPRQGLFKKGGD 145 (359)
T ss_pred hhHHHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcC-----CCEEEEEeeee--eecchhhhhccCCC
Confidence 001123344579999999985322 2222233333 45788888752 11111111122337
Q ss_pred cceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCC
Q 016053 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKG 284 (396)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg 284 (396)
.+++.|....+.+.+ .+....++.+|+||+|...+.+... +.++++++|+++|++.+.||
T Consensus 146 ~ii~~s~~~~~~~~~-----~~~~~~~~~vi~n~~~~~~~~~~~~---------------~~~~~~~~i~~~G~~~~~k~ 205 (359)
T cd03823 146 AVIAPSRFLLDRYVA-----NGLFAEKISVIRNGIDLDRAKRPRR---------------APPGGRLRFGFIGQLTPHKG 205 (359)
T ss_pred EEEEeCHHHHHHHHH-----cCCCccceEEecCCcChhhcccccc---------------CCCCCceEEEEEecCccccC
Confidence 777777776665543 3334568999999999987653210 23467889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEe
Q 016053 285 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQ 362 (396)
Q Consensus 285 ~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~ 362 (396)
++.++++++++.+ ++++|+++|.+. ......... +..++|+++|+. +++.++|++||++++
T Consensus 206 ~~~li~~~~~l~~---------~~~~l~i~G~~~-----~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ 268 (359)
T cd03823 206 VDLLLEAFKRLPR---------GDIELVIVGNGL-----ELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVV 268 (359)
T ss_pred HHHHHHHHHHHHh---------cCcEEEEEcCch-----hhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEE
Confidence 9999999998764 589999999986 222222222 556899999997 899999999999999
Q ss_pred cCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 363 NSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 363 pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
||.. .|++|++++|||+||+|||+|+.+|..
T Consensus 269 ps~~-~e~~~~~~~Ea~a~G~Pvi~~~~~~~~ 299 (359)
T cd03823 269 PSIW-PENFPLVIREALAAGVPVIASDIGGMA 299 (359)
T ss_pred cCcc-cCCCChHHHHHHHCCCCEEECCCCCHH
Confidence 9973 799999999999999999999998854
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.96 E-value=3e-27 Score=222.43 Aligned_cols=272 Identities=19% Similarity=0.184 Sum_probs=192.3
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc--------------
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG-------------- 141 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 141 (396)
||+++++. .||.+.+...++++|.+.||+|++++....... .....++.+.....
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---------ELEALGVKVIPIPLDRRGINPFKDLKAL 69 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---------ccccCCceEEeccccccccChHhHHHHH
Confidence 58888876 688889999999999999999999996544311 11223333322211
Q ss_pred --hhhhhhccCCcEEEEcCchhhHHHHHHHh-cCCCccccceeeeeeecccccCchh---------hhccccccccceee
Q 016053 142 --QETINTALKADLIVLNTAVAGKWLDAVLK-EDVPRVLPNVLWWIHEMRGHYFKLD---------YVKHLPLVAGAMID 209 (396)
Q Consensus 142 --~~~~~~~~~~DiV~~~~~~~~~~~~~~~~-~~~~~~~~~vv~~~h~~~~~~~~~~---------~~~~~~~~~~~~~~ 209 (396)
...+.+..+||+||++......+...... .+. +++++..|+......... ........+.+++.
T Consensus 70 ~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 145 (359)
T cd03808 70 LRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGV----PKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQ 145 (359)
T ss_pred HHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCC----CCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEc
Confidence 12233457999999997655443333322 222 446777776532211111 12233466777877
Q ss_pred ccccHHHHHHHHHhhhccc-CCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHH
Q 016053 210 SHVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (396)
Q Consensus 210 s~~~~~~~~~~~~~~~g~~-~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~l 288 (396)
|....+.+.+ ....+ ..++.++++|+|.+.+.+.... .+++++.|+++|++.+.||++.+
T Consensus 146 s~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~~~G~~~~~k~~~~l 206 (359)
T cd03808 146 NEDDRDLALK----LGIIKKKKTVLIPGSGVDLDRFSPSPEP---------------IPEDDPVFLFVARLLKDKGIDEL 206 (359)
T ss_pred CHHHHHHHHH----hcCCCcCceEEecCCCCChhhcCccccc---------------cCCCCcEEEEEeccccccCHHHH
Confidence 7777666543 22222 4567888899998877543210 23577899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHH-HHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCC
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN-YVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAW 367 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~-~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~ 367 (396)
+++++.+.+ ++++++|+++|.+... ..... .+.+.+..++|+|+|+.+++.++|++||++++||.
T Consensus 207 i~~~~~l~~-------~~~~~~l~i~G~~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~-- 272 (359)
T cd03808 207 LEAARILKA-------KGPNVRLLLVGDGDEE-----NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSY-- 272 (359)
T ss_pred HHHHHHHHh-------cCCCeEEEEEcCCCcc-----hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCc--
Confidence 999998864 3489999999998632 22222 36667777899999999999999999999999999
Q ss_pred CCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 368 GECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 368 ~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
.|++|++++|||+||+|||+|+.+|...
T Consensus 273 ~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~ 300 (359)
T cd03808 273 REGLPRVLLEAMAMGRPVIATDVPGCRE 300 (359)
T ss_pred ccCcchHHHHHHHcCCCEEEecCCCchh
Confidence 8999999999999999999999998754
No 50
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.96 E-value=1.2e-27 Score=231.54 Aligned_cols=279 Identities=13% Similarity=0.136 Sum_probs=185.6
Q ss_pred ccEEEEEecc-CC-CCChHHHHHHHHHHHHhC-CCEEEEEeccCCCCchhhh--------------hhhhhhhhh-c---
Q 016053 74 SKLVLLVSHE-LS-LSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVI--------------YSLEHKMWD-R--- 132 (396)
Q Consensus 74 ~~kIl~v~~~-~~-~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~--------------~~~~~~~~~-~--- 132 (396)
+++|.+++.. ++ +.|...--.--|-+|.+. |++|+++.+--...+.... ..+.+++.+ .
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r~g~~ 401 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEERIGFK 401 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 3679999876 33 377664444445667776 7999988842111111111 011122211 1
Q ss_pred -c--eEEEEc------------CchhhhhhccCCcEEEEcCchhhHHH--H--HHHhcCCCccccceeeeeeecccccCc
Q 016053 133 -G--VQVISA------------KGQETINTALKADLIVLNTAVAGKWL--D--AVLKEDVPRVLPNVLWWIHEMRGHYFK 193 (396)
Q Consensus 133 -~--~~~~~~------------~~~~~~~~~~~~DiV~~~~~~~~~~~--~--~~~~~~~~~~~~~vv~~~h~~~~~~~~ 193 (396)
. +.+++- .........++||+||+++|....+. . .+.+.+ +++..+|.....|..
T Consensus 402 ~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~------PVVasyHTny~eYl~ 475 (794)
T PLN02501 402 ADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN------HVVGVVHTNYLEYIK 475 (794)
T ss_pred CCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcC------CeEEEEeCCcHHHHh
Confidence 1 222221 22234455689999999998665444 2 233332 377788876533322
Q ss_pred hh----hh--------ccccc--cccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHH
Q 016053 194 LD----YV--------KHLPL--VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREH 259 (396)
Q Consensus 194 ~~----~~--------~~~~~--~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~ 259 (396)
.. .. +++.. ++.+++.|..+... ... .....||||.+.|.+... ..
T Consensus 476 ~y~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~L-----------~~~-vI~nVnGVDte~F~P~~r--------~~ 535 (794)
T PLN02501 476 REKNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDL-----------PKS-VICNVHGVNPKFLKIGEK--------VA 535 (794)
T ss_pred HhcchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHHh-----------ccc-ceeecccccccccCCcch--------hH
Confidence 11 01 12222 46666666444321 111 222226999999876532 12
Q ss_pred HHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCC
Q 016053 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD 339 (396)
Q Consensus 260 ~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~ 339 (396)
.++++|+......++|+||+.+.||++.+++|++.+.+ +.++++|+|+|+|+ .++++++++.++++
T Consensus 536 ~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~-------~~pnvrLvIVGDGP-----~reeLe~la~eLgL-- 601 (794)
T PLN02501 536 EERELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN-------ELDGFNLDVFGNGE-----DAHEVQRAAKRLDL-- 601 (794)
T ss_pred HHHhcCCccccCceEEEEcccccCCHHHHHHHHHHHHh-------hCCCeEEEEEcCCc-----cHHHHHHHHHHcCC--
Confidence 23567765555568999999999999999999998765 23789999999997 77889999998887
Q ss_pred cEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 340 ~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
+|.|+|..+++.++|+.+||||+||. .|+||++++||||||+|||+++.||..
T Consensus 602 ~V~FLG~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG~e 654 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPSNE 654 (794)
T ss_pred EEEecCCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCCCc
Confidence 49999999999999999999999999 999999999999999999999999864
No 51
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.96 E-value=3.7e-28 Score=230.17 Aligned_cols=285 Identities=17% Similarity=0.087 Sum_probs=195.9
Q ss_pred EEEEEeccCC---CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhh-h-hcceEEEE-----cCchhhh
Q 016053 76 LVLLVSHELS---LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKM-W-DRGVQVIS-----AKGQETI 145 (396)
Q Consensus 76 kIl~v~~~~~---~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-----~~~~~~~ 145 (396)
||++++.... .||+++++.+++++|.+.|++|++++.................. . ........ .......
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 5777877644 49999999999999999999999999543321111000000000 0 00000000 0011122
Q ss_pred hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccC----ch--------hhhccccccccceeecccc
Q 016053 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF----KL--------DYVKHLPLVAGAMIDSHVT 213 (396)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~----~~--------~~~~~~~~~~~~~~~s~~~ 213 (396)
....++|+||++....... ... ..++++++|+...... .. .....+...+.+++.|...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~----~~~-----~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~ 151 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL----RLR-----GVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEAT 151 (365)
T ss_pred hhhcCCCeeeecccccCcc----cCC-----CCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHH
Confidence 2347899999998654432 122 2568888997632211 11 1223345777788887776
Q ss_pred HHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHH
Q 016053 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (396)
Q Consensus 214 ~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~ 293 (396)
.+.+.+ .++.+..++.++|||+|...+..... .. +......++++.|+++|++.+.||++.+++++.
T Consensus 152 ~~~~~~----~~~~~~~~~~vi~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~ 218 (365)
T cd03809 152 KRDLLR----YLGVPPDKIVVIPLGVDPRFRPPPAE--------AE-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFA 218 (365)
T ss_pred HHHHHH----HhCcCHHHEEeeccccCccccCCCch--------HH-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHH
Confidence 666554 45556678999999999987754321 11 334445567889999999999999999999999
Q ss_pred HHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCc
Q 016053 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (396)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~f 371 (396)
++.+ ++++++|+++|.+... .....+..++.+..++|+++|+. +++.++|++||++++||. .|++
T Consensus 219 ~~~~-------~~~~~~l~i~G~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~ 285 (365)
T cd03809 219 RLPA-------KGPDPKLVIVGKRGWL----NEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSL--YEGF 285 (365)
T ss_pred HHHH-------hcCCCCEEEecCCccc----cHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccch--hccC
Confidence 9876 2357999999987532 22333333677888999999997 789999999999999999 9999
Q ss_pred cHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 372 GRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 372 g~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
|++++|||++|+|||+++.||...
T Consensus 286 ~~~~~Ea~a~G~pvI~~~~~~~~e 309 (365)
T cd03809 286 GLPVLEAMACGTPVIASNISSLPE 309 (365)
T ss_pred CCCHHHHhcCCCcEEecCCCCccc
Confidence 999999999999999999998653
No 52
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=2.4e-27 Score=224.35 Aligned_cols=278 Identities=19% Similarity=0.183 Sum_probs=185.9
Q ss_pred EEEEEeccCCC--CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhh--hh-hhhh-hhcceEEE--EcCchhhhhh
Q 016053 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIY--SL-EHKM-WDRGVQVI--SAKGQETINT 147 (396)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~--~~-~~~~-~~~~~~~~--~~~~~~~~~~ 147 (396)
||+++++...+ ||++..+.+++++|.++||+|++++............ .+ .... ........ .........+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 58888866443 8889999999999999999999999554321100000 00 0000 00011110 1111223334
Q ss_pred ccCCcEEEEcCchhhHHH--HHHHhcCCCccccceeeeeeecccccCc------------hhhhccccccccceeecccc
Q 016053 148 ALKADLIVLNTAVAGKWL--DAVLKEDVPRVLPNVLWWIHEMRGHYFK------------LDYVKHLPLVAGAMIDSHVT 213 (396)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~--~~~~~~~~~~~~~~vv~~~h~~~~~~~~------------~~~~~~~~~~~~~~~~s~~~ 213 (396)
..+||+||++.+....+. ..+.+.+ .+++.++|+....+.. .......+.++.+++.+...
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~ 155 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAARRLG-----IPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSL 155 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHHHcC-----CCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHH
Confidence 679999999875432222 2223334 3467777764221110 01122334667777777766
Q ss_pred HHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHH
Q 016053 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (396)
Q Consensus 214 ~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~ 293 (396)
.+.+. . ....++.+++||+|.+.+.+... ....+++++ .++.+.|+++|++.+.||++.++++++
T Consensus 156 ~~~~~-----~--~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~ 220 (364)
T cd03814 156 ADELR-----A--RGFRRVRLWPRGVDTELFHPRRR-------DEALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADL 220 (364)
T ss_pred HHHHh-----c--cCCCceeecCCCccccccCcccc-------cHHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHH
Confidence 55322 1 23457899999999988764321 122345555 466789999999999999999999999
Q ss_pred HHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCc
Q 016053 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (396)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~f 371 (396)
++.+ + ++++|+++|.++ +.+.++ +..++|.|+|+. +++.++|+.||++++||. .|+|
T Consensus 221 ~l~~-------~-~~~~l~i~G~~~-----~~~~~~------~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~ 279 (364)
T cd03814 221 PLRR-------R-PPVRLVIVGDGP-----ARARLE------ARYPNVHFLGFLDGEELAAAYASADVFVFPSR--TETF 279 (364)
T ss_pred Hhhh-------c-CCceEEEEeCCc-----hHHHHh------ccCCcEEEEeccCHHHHHHHHHhCCEEEECcc--cccC
Confidence 8864 3 589999999885 444443 445789999964 789999999999999999 9999
Q ss_pred cHHHHHHHhcCCCEEEcCCCCCC
Q 016053 372 GRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 372 g~~~lEAma~G~PVI~t~~gG~~ 394 (396)
|++++||||||+|||+++.+|..
T Consensus 280 ~~~~lEa~a~g~PvI~~~~~~~~ 302 (364)
T cd03814 280 GLVVLEAMASGLPVVAPDAGGPA 302 (364)
T ss_pred CcHHHHHHHcCCCEEEcCCCCch
Confidence 99999999999999999999865
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.96 E-value=8.1e-27 Score=219.90 Aligned_cols=288 Identities=22% Similarity=0.178 Sum_probs=204.3
Q ss_pred EEEEEeccCCC--CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEE--------cCchhhh
Q 016053 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS--------AKGQETI 145 (396)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 145 (396)
||+++++.... ||+..++.+++++|.+.||+|.+++........................... ......+
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 58888876443 7888999999999999999999999554322111100000000000000000 0011233
Q ss_pred hhccCCcEEEEcCchhhHHHH-HHHhcCCCccccceeeeeeecccccCc-----------hhhhccccccccceeecccc
Q 016053 146 NTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFK-----------LDYVKHLPLVAGAMIDSHVT 213 (396)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~vv~~~h~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~~ 213 (396)
....++|+||++......... .....+ .++++++|+....... ......+...+.+++.+...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~-----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~ 155 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLG-----IPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEAT 155 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcC-----CcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHH
Confidence 345789999999976544332 222223 4578888886432211 11223345778888888777
Q ss_pred HHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHH
Q 016053 214 AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFY 293 (396)
Q Consensus 214 ~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~ 293 (396)
.+.+.+ .++....++.++|||+|...+.+.. ...+.......+.+.|+++|++.+.||++.+++++.
T Consensus 156 ~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~ 222 (374)
T cd03801 156 REELRE----LGGVPPEKITVIPNGVDTERFRPAP---------RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALA 222 (374)
T ss_pred HHHHHh----cCCCCCCcEEEecCcccccccCccc---------hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHH
Confidence 766554 3444446899999999988775421 223444555677899999999999999999999999
Q ss_pred HHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCc
Q 016053 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECF 371 (396)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~f 371 (396)
.+.+ ++++++|+++|++. ..+.+++.+++++..++|.+.|.+ +++.++|+.||++++|+. .|++
T Consensus 223 ~~~~-------~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~ 288 (374)
T cd03801 223 KLRK-------EYPDVRLVIVGDGP-----LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSL--YEGF 288 (374)
T ss_pred HHhh-------hcCCeEEEEEeCcH-----HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecch--hccc
Confidence 8865 23789999999775 778888888888999999999997 899999999999999999 8999
Q ss_pred cHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 372 GRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 372 g~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
|++++|||++|+|||+++.+|.+.
T Consensus 289 ~~~~~Ea~~~g~pvI~~~~~~~~~ 312 (374)
T cd03801 289 GLVLLEAMAAGLPVVASDVGGIPE 312 (374)
T ss_pred cchHHHHHHcCCcEEEeCCCChhH
Confidence 999999999999999999988654
No 54
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.95 E-value=6.5e-27 Score=225.05 Aligned_cols=277 Identities=15% Similarity=0.134 Sum_probs=179.4
Q ss_pred EEEEeccCCC---CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcC-------------
Q 016053 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK------------- 140 (396)
Q Consensus 77 Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 140 (396)
||++++..+. +|+...+++++++|.+. |+|++++......+......+..... .+.+++..
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~ 77 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCE--EVCVVPLDPRVARLRSLLGLL 77 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhh--eeEEeecCcHHHHHHHHhhhc
Confidence 6888876433 77789999999999876 99999995432221111111211111 22221110
Q ss_pred -----------c------hhhhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc---------Cch
Q 016053 141 -----------G------QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY---------FKL 194 (396)
Q Consensus 141 -----------~------~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~---------~~~ 194 (396)
. .+.+....++|+||+++.....++.. ...+ .+.++..|+..... ...
T Consensus 78 ~~~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~~~-~~~~-----~p~i~~~~d~~~~~~~~~~~~~~~~~ 151 (397)
T TIGR03087 78 TGEPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYVTP-HVRG-----VPRIVDFVDVDSDKWLQYARTKRWPL 151 (397)
T ss_pred CCCCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceeccc-cccC-----CCeEeehhhHHHHHHHHHHhccCcch
Confidence 0 01222347999999998644433221 1122 34566677642110 000
Q ss_pred h--h-----------hccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHH
Q 016053 195 D--Y-----------VKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVR 261 (396)
Q Consensus 195 ~--~-----------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r 261 (396)
. + ...++.++.+++.|....+.+.+ ..+....++.+||||+|.+.|.+....
T Consensus 152 ~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~----~~~~~~~~v~vipngvd~~~f~~~~~~----------- 216 (397)
T TIGR03087 152 RWIYRREGRLLLAYERAIAARFDAATFVSRAEAELFRR----LAPEAAGRITAFPNGVDADFFSPDRDY----------- 216 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHH----hCCCCCCCeEEeecccchhhcCCCccc-----------
Confidence 0 0 11235677788887776665543 233455689999999999988643210
Q ss_pred HHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcE
Q 016053 262 ESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (396)
Q Consensus 262 ~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V 341 (396)
.-..++++.+|+|+|++.+.||++.+++++..+...+.+ +.|+++|+|+|+|+ . +++ ++++..++|
T Consensus 217 -~~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~---~~p~~~l~ivG~g~-----~-~~~----~~l~~~~~V 282 (397)
T TIGR03087 217 -PNPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRA---RRPAAEFYIVGAKP-----S-PAV----RALAALPGV 282 (397)
T ss_pred -cCCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHH---HCCCcEEEEECCCC-----h-HHH----HHhccCCCe
Confidence 011234567899999999999999999666544333332 34899999999986 2 223 333445789
Q ss_pred EEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 342 HFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 342 ~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+|+|+++++..+|++||++|+||. +.||+|++++||||||+|||+|+.++
T Consensus 283 ~~~G~v~~~~~~~~~adv~v~Ps~-~~eG~~~~~lEAma~G~PVV~t~~~~ 332 (397)
T TIGR03087 283 TVTGSVADVRPYLAHAAVAVAPLR-IARGIQNKVLEAMAMAKPVVASPEAA 332 (397)
T ss_pred EEeeecCCHHHHHHhCCEEEeccc-ccCCcccHHHHHHHcCCCEEecCccc
Confidence 999999999999999999999997 26999999999999999999999754
No 55
>PLN00142 sucrose synthase
Probab=99.95 E-value=1.1e-26 Score=232.07 Aligned_cols=232 Identities=16% Similarity=0.162 Sum_probs=152.7
Q ss_pred cCCcEEEEcCchhhHHHHHH-HhcCCCccccceeeeeeecccccC----------chhh---------hcccccccccee
Q 016053 149 LKADLIVLNTAVAGKWLDAV-LKEDVPRVLPNVLWWIHEMRGHYF----------KLDY---------VKHLPLVAGAMI 208 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~-~~~~~~~~~~~vv~~~h~~~~~~~----------~~~~---------~~~~~~~~~~~~ 208 (396)
.+||+||+|.+.++.....+ .+.++| .+.+.|......+ ...+ ...+..++.+++
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP-----~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIa 481 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVT-----QCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIIT 481 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCC-----EEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHh
Confidence 46999999998776654433 345654 7778885421100 0000 112234555555
Q ss_pred eccccHHHHHHHH---Hh------------hhcc--cCCCEEEEecCCccchhhhhhhhHHHH-----------HhHHHH
Q 016053 209 DSHVTAEYWKNRT---RE------------RLRI--KMPDTYVVHLGNSKELMEVAEDNVAKR-----------VLREHV 260 (396)
Q Consensus 209 ~s~~~~~~~~~~~---~~------------~~g~--~~~k~~vI~ngid~~~~~~~~~~~~~~-----------~~~~~~ 260 (396)
.+..-...+.+++ .. ..|+ ..+|+.+|++|+|...|.|......+. -+..+.
T Consensus 482 sT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~ 561 (815)
T PLN00142 482 STYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQN 561 (815)
T ss_pred CcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHH
Confidence 5433221111000 00 0133 256899999999999886532111000 011223
Q ss_pred HHHcCC--CCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc----cch---HHHHHHHH
Q 016053 261 RESLGV--RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA----QTK---FESELRNY 331 (396)
Q Consensus 261 r~~~g~--~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~----~~~---~~~~l~~~ 331 (396)
++.+|+ ++++++|+++||+.+.||++.+++|++++.+. .++++|+|+|++.+. +.+ ..+++.++
T Consensus 562 ~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l-------~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~L 634 (815)
T PLN00142 562 DEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRL-------RELVNLVVVGGFIDPSKSKDREEIAEIKKMHSL 634 (815)
T ss_pred HHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHh-------CCCcEEEEEECCccccccccHHHHHHHHHHHHH
Confidence 456775 45677999999999999999999999987542 268999999987311 111 12457889
Q ss_pred HHhcCCCCcEEEecCc------CCHHHHHH-HcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 332 VMQKKIQDRVHFVNKT------LTVAPYLA-AIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 332 ~~~~~l~~~V~~~g~~------~~~~~~~~-~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
++++++.++|.|+|.+ .++..+++ ++|+||+||. +|+||++++||||||+|||+|+.||++
T Consensus 635 a~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~ 702 (815)
T PLN00142 635 IEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCQGGPA 702 (815)
T ss_pred HHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHH
Confidence 9999999999999964 23555555 4799999999 999999999999999999999999975
No 56
>PLN02275 transferase, transferring glycosyl groups
Probab=99.95 E-value=2.4e-26 Score=218.74 Aligned_cols=279 Identities=11% Similarity=0.034 Sum_probs=184.1
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCC-CEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch----------h-
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----------E- 143 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~- 143 (396)
++.++. ....|++..+..++..|.++| ++|++++...... ..+.....+++++..... +
T Consensus 6 ~~~~~~--~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~-------~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~ 76 (371)
T PLN02275 6 RAAVVV--LGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEP-------IPALLNHPSIHIHLMVQPRLLQRLPRVLYA 76 (371)
T ss_pred EEEEEE--ecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCC-------CHHHhcCCcEEEEECCCcccccccccchHH
Confidence 455554 244677888888888888877 5899998543321 222233345666544210 0
Q ss_pred -----h------------hhhccCCcEEEEcCchhhH--HHH-H-HHhcCCCccccceeeeeeecccccC------ch--
Q 016053 144 -----T------------INTALKADLIVLNTAVAGK--WLD-A-VLKEDVPRVLPNVLWWIHEMRGHYF------KL-- 194 (396)
Q Consensus 144 -----~------------~~~~~~~DiV~~~~~~~~~--~~~-~-~~~~~~~~~~~~vv~~~h~~~~~~~------~~-- 194 (396)
. ..+..+||+||+|++.... ... . ++..+ .|++.+.|+...... ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~-----~p~v~~~h~~~~~~~~~~~~~~~~~ 151 (371)
T PLN02275 77 LALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRR-----AKFVIDWHNFGYTLLALSLGRSHPL 151 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhC-----CCEEEEcCCccHHHHhcccCCCCHH
Confidence 0 1234799999999754321 111 1 12223 346777786521100 00
Q ss_pred -h-----hhccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCC
Q 016053 195 -D-----YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRN 268 (396)
Q Consensus 195 -~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~ 268 (396)
. ....++.++.+++.|....+.+.+ .+|++ +.+||||. .+.|.+.... ..+. .+
T Consensus 152 ~~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~----~~g~~---i~vi~n~~-~~~f~~~~~~-----------~~~~-~~ 211 (371)
T PLN02275 152 VRLYRWYERHYGKMADGHLCVTKAMQHELDQ----NWGIR---ATVLYDQP-PEFFRPASLE-----------IRLR-PN 211 (371)
T ss_pred HHHHHHHHHHHHhhCCEEEECCHHHHHHHHH----hcCCC---eEEECCCC-HHHcCcCCch-----------hccc-CC
Confidence 0 112345678888888887776643 34543 88999994 4555433210 1111 13
Q ss_pred CCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhc----------cCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCC
Q 016053 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKK----------LEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ 338 (396)
Q Consensus 269 ~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~----------~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~ 338 (396)
+..+++++|++.+.||++.+++|+..+..++..-+ .++++++|+|+|+|+ .++++++++++++++
T Consensus 212 ~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~-----~~~~l~~~~~~~~l~ 286 (371)
T PLN02275 212 RPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGP-----QKAMYEEKISRLNLR 286 (371)
T ss_pred CcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCC-----CHHHHHHHHHHcCCC
Confidence 45678899999999999999999998754321100 023789999999997 788999999999997
Q ss_pred CcEEEec-C--cCCHHHHHHHcCEEEecCC-CCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 339 DRVHFVN-K--TLTVAPYLAAIDVLVQNSQ-AWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 339 ~~V~~~g-~--~~~~~~~~~~aDv~v~pS~-~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
+ ++|.+ + .++++++|++||++|+|+. .+.|++|++++||||||+|||+++.||.+
T Consensus 287 ~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~ 345 (371)
T PLN02275 287 H-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIG 345 (371)
T ss_pred c-eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChH
Confidence 6 88866 3 3899999999999998642 12589999999999999999999999865
No 57
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.95 E-value=1.8e-26 Score=219.65 Aligned_cols=287 Identities=18% Similarity=0.128 Sum_probs=196.4
Q ss_pred EEEEEeccCCC--CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch-----------
Q 016053 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----------- 142 (396)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 142 (396)
|||++++.... ||++.++.+++++|.++||+|++++............. .......++.+......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG-YKREEVDGVRVHRVPLPPYKKNGLLKRL 79 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc-ceEEecCCeEEEEEecCCCCccchHHHH
Confidence 58999987555 88899999999999999999999995433211110000 00011223333221100
Q ss_pred -----------hhhh-hccCCcEEEEcCchhh-HHHHHHHhcCCCccccceeeeeeecccccC------c-h----h---
Q 016053 143 -----------ETIN-TALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYF------K-L----D--- 195 (396)
Q Consensus 143 -----------~~~~-~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~------~-~----~--- 195 (396)
.... ...+||+||++.+... .......+... ..++++++|+...... . . .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 156 (394)
T cd03794 80 LNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLK---GAPFVLEVRDLWPESAVALGLLKNGSLLYRLLR 156 (394)
T ss_pred HhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhc---CCCEEEEehhhcchhHHHccCccccchHHHHHH
Confidence 0111 3678999999983222 22222122111 2457888887532110 0 0 0
Q ss_pred --hhccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEE
Q 016053 196 --YVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF 273 (396)
Q Consensus 196 --~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~i 273 (396)
....+...+.+++.+....+.+. ..+.+..++.++|||+|...+.+.... .. +.......+.+.|
T Consensus 157 ~~~~~~~~~~d~vi~~s~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~i 223 (394)
T cd03794 157 KLERLIYRRADAIVVISPGMREYLV-----RRGVPPEKISVIPNGVDLELFKPPPAD-------ES-LRKELGLDDKFVV 223 (394)
T ss_pred HHHHHHHhcCCEEEEECHHHHHHHH-----hcCCCcCceEEcCCCCCHHHcCCccch-------hh-hhhccCCCCcEEE
Confidence 11234567777877777666544 346677889999999998877543211 11 3445556788999
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHH
Q 016053 274 AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVA 351 (396)
Q Consensus 274 l~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~ 351 (396)
+++|++.+.||++.+++++.++.+ . ++++|+++|++. ..+.+++.+...++ ++|.++|.. +++.
T Consensus 224 ~~~G~~~~~k~~~~l~~~~~~l~~-------~-~~~~l~i~G~~~-----~~~~~~~~~~~~~~-~~v~~~g~~~~~~~~ 289 (394)
T cd03794 224 LYAGNIGRAQGLDTLLEAAALLKD-------R-PDIRFLIVGDGP-----EKEELKELAKALGL-DNVTFLGRVPKEELP 289 (394)
T ss_pred EEecCcccccCHHHHHHHHHHHhh-------c-CCeEEEEeCCcc-----cHHHHHHHHHHcCC-CcEEEeCCCChHHHH
Confidence 999999999999999999998864 2 589999999986 56777777666666 579999976 6899
Q ss_pred HHHHHcCEEEecCCCCCCCc-----cHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 352 PYLAAIDVLVQNSQAWGECF-----GRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 352 ~~~~~aDv~v~pS~~~~E~f-----g~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
++|++||++++||. .|++ |++++|||+||+|||+++.+|...
T Consensus 290 ~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~ 336 (394)
T cd03794 290 ELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE 336 (394)
T ss_pred HHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEEEecCCCchh
Confidence 99999999999999 7765 888999999999999999998754
No 58
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.95 E-value=3.2e-27 Score=231.73 Aligned_cols=211 Identities=20% Similarity=0.178 Sum_probs=161.8
Q ss_pred cCCcEEEEcCchhhHHHHH--HHhcCCCccccceeeeeeecccc--------------cCchhhh--------ccccccc
Q 016053 149 LKADLIVLNTAVAGKWLDA--VLKEDVPRVLPNVLWWIHEMRGH--------------YFKLDYV--------KHLPLVA 204 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~--~~~~~~~~~~~~vv~~~h~~~~~--------------~~~~~~~--------~~~~~~~ 204 (396)
.++|++|+|+.....++.. ....+ .|++++.|+.... .++..+. ..++.++
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~-----~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad 246 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRG-----TPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAAD 246 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHHhC-----CCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5889999997532222222 22334 4588888874210 0011111 1235677
Q ss_pred cceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCC
Q 016053 205 GAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKG 284 (396)
Q Consensus 205 ~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg 284 (396)
.+++.|....+... .+|.+++|+.+||||+|.+.|.+.... ...++.++|+++||+.+.||
T Consensus 247 ~Ii~~s~~~~~~~~-----~~g~~~~ki~vIpNgid~~~f~~~~~~--------------~~~~~~~~i~~vGrl~~~Kg 307 (475)
T cd03813 247 RITTLYEGNRERQI-----EDGADPEKIRVIPNGIDPERFAPARRA--------------RPEKEPPVVGLIGRVVPIKD 307 (475)
T ss_pred EEEecCHHHHHHHH-----HcCCCHHHeEEeCCCcCHHHcCCcccc--------------ccCCCCcEEEEEeccccccC
Confidence 78877776654432 567888899999999999888653210 12357789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecC
Q 016053 285 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (396)
Q Consensus 285 ~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS 364 (396)
++.+++|++.+.+. .++++|+|+|+++ .++++.++++++++++++.++|+|+| .+++.++|+++|++|+||
T Consensus 308 ~~~li~a~~~l~~~-------~p~~~l~IvG~g~-~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS 378 (475)
T cd03813 308 IKTFIRAAAIVRKK-------IPDAEGWVIGPTD-EDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTS 378 (475)
T ss_pred HHHHHHHHHHHHHh-------CCCeEEEEECCCC-cChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCc
Confidence 99999999998763 3899999999885 33457889999999999999999999 779999999999999999
Q ss_pred CCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 365 QAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 365 ~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
. .|+||++++||||||+|||+|+.||.+
T Consensus 379 ~--~Eg~p~~vlEAma~G~PVVatd~g~~~ 406 (475)
T cd03813 379 I--SEGQPLVILEAMAAGIPVVATDVGSCR 406 (475)
T ss_pred h--hhcCChHHHHHHHcCCCEEECCCCChH
Confidence 9 999999999999999999999999864
No 59
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.95 E-value=2.6e-26 Score=217.15 Aligned_cols=287 Identities=22% Similarity=0.259 Sum_probs=201.9
Q ss_pred EEEEeccCCC---CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhh-------hhhhhhcceEE-------EEc
Q 016053 77 VLLVSHELSL---SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSL-------EHKMWDRGVQV-------ISA 139 (396)
Q Consensus 77 Il~v~~~~~~---gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~-------~~~~~~~~~~~-------~~~ 139 (396)
||++++..+. ||++.++.+++++|.+.||+|++++.............. ........... ...
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 5777776554 888999999999999999999999954332211110000 00000000000 000
Q ss_pred Cchhhhhh--ccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCch------hhhccccccccceeecc
Q 016053 140 KGQETINT--ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKL------DYVKHLPLVAGAMIDSH 211 (396)
Q Consensus 140 ~~~~~~~~--~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~------~~~~~~~~~~~~~~~s~ 211 (396)
.....+.. ..++|+||++......++........ ..+++++.|+........ .....+..++.+++.|.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~---~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~ 157 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKL---GIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSE 157 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhc---CCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCH
Confidence 11123334 68999999997654443333222211 145788888764322211 12344567788888887
Q ss_pred ccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHH
Q 016053 212 VTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (396)
Q Consensus 212 ~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a 291 (396)
...+.+.+ .+....++.+++||+|.+.+.+.... .. +.++...+.+.++++|++.+.||++.++++
T Consensus 158 ~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~i~~~g~~~~~k~~~~li~~ 223 (377)
T cd03798 158 ALADELKA-----LGIDPEKVTVIPNGVDTERFSPADRA--------EA-RKLGLPEDKKVILFVGRLVPRKGIDYLIEA 223 (377)
T ss_pred HHHHHHHH-----hcCCCCceEEcCCCcCcccCCCcchH--------HH-HhccCCCCceEEEEeccCccccCHHHHHHH
Confidence 77766553 22567789999999999887654211 01 445556788999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCC
Q 016053 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGE 369 (396)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E 369 (396)
++.+.+ ++++++|+++|.+. ..+.+++.+++.++.++|.+.|+. +++.++|+.||++++||. .|
T Consensus 224 ~~~~~~-------~~~~~~l~i~g~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~--~~ 289 (377)
T cd03798 224 LARLLK-------KRPDVHLVIVGDGP-----LREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSL--RE 289 (377)
T ss_pred HHHHHh-------cCCCeEEEEEcCCc-----chHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchh--hc
Confidence 998865 34799999999886 567788888888998999999997 679999999999999999 89
Q ss_pred CccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 370 CFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 370 ~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
++|++++|||++|+|||+++.+|..
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~~~ 314 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGGIP 314 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCChH
Confidence 9999999999999999999998854
No 60
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.94 E-value=9.7e-26 Score=220.24 Aligned_cols=208 Identities=14% Similarity=0.182 Sum_probs=156.0
Q ss_pred ccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecc--cccCch--h-h-------hccccccccceeeccccHH
Q 016053 148 ALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR--GHYFKL--D-Y-------VKHLPLVAGAMIDSHVTAE 215 (396)
Q Consensus 148 ~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~--~~~~~~--~-~-------~~~~~~~~~~~~~s~~~~~ 215 (396)
..++|++|++.+....+........ .+.+.++|..+ ...... . + ......++.+++.|....+
T Consensus 209 ~~~~di~i~dr~~~~~~~~~~~~~~-----~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~~~D~iI~~S~~~~~ 283 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQAVLENKGP-----AKLGVVVHAEHFSESATNETYILWNNYYEYQFSNADYIDFFITATDIQNQ 283 (500)
T ss_pred CCCCCEEEEcCCcccchHHHhcCCC-----ceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchhhCCEEEECCHHHHH
Confidence 4688999998765433221111111 45667788643 111110 0 1 1234567888888888777
Q ss_pred HHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHH
Q 016053 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYES 295 (396)
Q Consensus 216 ~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l 295 (396)
.+.+++. .++...+++.+||||++...+.+.. ..+...|+++||+.+.||++.+++|+.++
T Consensus 284 ~l~~~~~-~~~~~~~ki~viP~g~~~~~~~~~~------------------~r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 284 ILKNQFK-KYYNIEPRIYTIPVGSLDELQYPEQ------------------ERKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred HHHHHhh-hhcCCCCcEEEEcCCCcccccCccc------------------ccCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 7776544 2334457899999998754432110 13457899999999999999999999998
Q ss_pred HHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHH
Q 016053 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (396)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~ 375 (396)
.+ +.|+++|+|+|+|+ ..+.++++++++++.++|+|+|+. ++.++|+.||++|+||. .||||+++
T Consensus 345 ~~-------~~p~~~l~i~G~G~-----~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~ 409 (500)
T TIGR02918 345 KK-------SVPELTFDIYGEGG-----EKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTL 409 (500)
T ss_pred Hh-------hCCCeEEEEEECch-----hHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHH
Confidence 75 34899999999986 678899999999999999999976 79999999999999999 99999999
Q ss_pred HHHHhcCCCEEEcCCC-CCC
Q 016053 376 IEAMAFQLPVLVLSEL-HPS 394 (396)
Q Consensus 376 lEAma~G~PVI~t~~g-G~~ 394 (396)
+||||||+|||+|+++ |++
T Consensus 410 lEAma~G~PVI~~dv~~G~~ 429 (500)
T TIGR02918 410 MEAVGSGLGMIGFDVNYGNP 429 (500)
T ss_pred HHHHHhCCCEEEecCCCCCH
Confidence 9999999999999986 664
No 61
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.93 E-value=1.1e-23 Score=202.72 Aligned_cols=212 Identities=17% Similarity=0.110 Sum_probs=156.5
Q ss_pred cCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccc--cCc----hhhhccccccccceeeccccHHHHHHHHH
Q 016053 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH--YFK----LDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~--~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (396)
.++|++|++............+.... .++++.+.|+..-. ... ......+..++.++++|....+++.+
T Consensus 126 ~~~~v~~sy~~~~~~~~~~~l~~~~~--~~~~i~~~Hg~d~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~--- 200 (407)
T cd04946 126 GQGTVFYSYWLHETAYALALLKKEYL--RKRVISRAHGYDLYEDRYPSGYIPLRRYLLSSLDAVFPCSEQGRNYLQK--- 200 (407)
T ss_pred cCceEEEEecCchHHHHHHHHHHhcC--CceEEEEeccchhhhhhccccchHHHHHHHhcCCEEEECCHHHHHHHHH---
Confidence 45677777653332222222222211 13578889965311 111 11223356788899999888877654
Q ss_pred hhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhh
Q 016053 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEK 302 (396)
Q Consensus 223 ~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~ 302 (396)
.++...+++.+++||++.+.+... ...++.+.|+++|++.+.||++.+++|+.++.+..++
T Consensus 201 -~~~~~~~ki~vi~~gv~~~~~~~~-----------------~~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~- 261 (407)
T cd04946 201 -RYPAYKEKIKVSYLGVSDPGIISK-----------------PSKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPS- 261 (407)
T ss_pred -HCCCccccEEEEECCcccccccCC-----------------CCCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCC-
Confidence 566677889999999988765321 1135678999999999999999999999998763211
Q ss_pred ccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHH--cCEEEecCCCCCCCccHHHHHH
Q 016053 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA--IDVLVQNSQAWGECFGRITIEA 378 (396)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~--aDv~v~pS~~~~E~fg~~~lEA 378 (396)
.+++++++|+|+ ..+.+++++++.+..++|+|+|++ +++.++|+. +|++++||. .||+|++++||
T Consensus 262 ----~~l~~~iiG~g~-----~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEA 330 (407)
T cd04946 262 ----IKIKWTHIGGGP-----LEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEA 330 (407)
T ss_pred ----ceEEEEEEeCch-----HHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHH
Confidence 267888999986 778899999888888899999997 478899976 789999999 99999999999
Q ss_pred HhcCCCEEEcCCCCCCC
Q 016053 379 MAFQLPVLVLSELHPSI 395 (396)
Q Consensus 379 ma~G~PVI~t~~gG~~~ 395 (396)
||||+|||+|++||..+
T Consensus 331 ma~G~PVIas~vgg~~e 347 (407)
T cd04946 331 MSFGIPVIATNVGGTPE 347 (407)
T ss_pred HHcCCCEEeCCCCCcHH
Confidence 99999999999999753
No 62
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.93 E-value=8.9e-25 Score=206.85 Aligned_cols=260 Identities=18% Similarity=0.144 Sum_probs=166.0
Q ss_pred EEEEEeccCC-CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhh-----hhhhhhhh--hcceE-EEEc-Cchhhh
Q 016053 76 LVLLVSHELS-LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVI-----YSLEHKMW--DRGVQ-VISA-KGQETI 145 (396)
Q Consensus 76 kIl~v~~~~~-~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~-----~~~~~~~~--~~~~~-~~~~-~~~~~~ 145 (396)
||+++++... .||+|+.+.++++.|.+. +|............... ........ ..... +... ......
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPDA--DIFTLVDDPDKLPRLLRLKKIRTSFIQKLPFARRRYRKYLPLMPLAIEQ 78 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCCC--CEEEEeecCCccchhhcCCceeechhhhchhhHhhHhhhCchhhHHHHh
Confidence 5888887755 599999999999998763 33332222111100000 00000000 00000 0000 001112
Q ss_pred hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccc-------c------Cch-------h-----hhccc
Q 016053 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-------Y------FKL-------D-----YVKHL 200 (396)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~-------~------~~~-------~-----~~~~~ 200 (396)
....++|+|++++......+. .... .+.++++|..... + ... . ..+.+
T Consensus 79 ~~~~~~D~v~~~~~~~~~~~~--~~~~-----~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (351)
T cd03804 79 FDLSGYDLVISSSHAVAKGVI--TRPD-----QLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSA 151 (351)
T ss_pred ccccCCCEEEEcCcHHhcccc--CCCC-----CcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHh
Confidence 234789999988753332211 1112 3455566642100 0 000 0 01223
Q ss_pred cccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEeccc
Q 016053 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (396)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~ 280 (396)
+.++.+++.|..+.+.+.+ .++ .+..+|+||+|.+.|.+.. ..+..++++|++.
T Consensus 152 ~~~d~ii~~S~~~~~~~~~----~~~---~~~~vi~~~~d~~~~~~~~-------------------~~~~~il~~G~~~ 205 (351)
T cd03804 152 ARVDYFIANSRFVARRIKK----YYG---RDATVIYPPVDTDRFTPAE-------------------EKEDYYLSVGRLV 205 (351)
T ss_pred cCCCEEEECCHHHHHHHHH----HhC---CCcEEECCCCCHhhcCcCC-------------------CCCCEEEEEEcCc
Confidence 6778888888888877654 233 2468999999988775321 2344688999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcC
Q 016053 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAID 358 (396)
Q Consensus 281 ~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aD 358 (396)
+.||++.+++|++.+ + ++|+|+|+|+ ..+++++ +..++|+|+|++ +++.++|++||
T Consensus 206 ~~K~~~~li~a~~~~-----------~-~~l~ivG~g~-----~~~~l~~-----~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 206 PYKRIDLAIEAFNKL-----------G-KRLVVIGDGP-----ELDRLRA-----KAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred cccChHHHHHHHHHC-----------C-CcEEEEECCh-----hHHHHHh-----hcCCCEEEecCCCHHHHHHHHHhCC
Confidence 999999999999864 4 8999999986 4455554 445899999997 45999999999
Q ss_pred EEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 359 VLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 359 v~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
++++||. |+||++++||||||+|||+++.||..+
T Consensus 264 ~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e 297 (351)
T cd03804 264 AFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALE 297 (351)
T ss_pred EEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcc
Confidence 9999986 999999999999999999999998764
No 63
>PHA01633 putative glycosyl transferase group 1
Probab=99.92 E-value=3.6e-23 Score=190.37 Aligned_cols=242 Identities=19% Similarity=0.200 Sum_probs=163.1
Q ss_pred CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcEEEEcCchhhHHHH
Q 016053 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLD 166 (396)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~ 166 (396)
+....+..++++-|+..|--|+++++.-. +.+ .+.-+-+++ .|-|....++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~-----------------~~~~~~~~~~~ 62 (335)
T PHA01633 11 SSISNVSEDIAEVLRENGEIVTITKNPFY---------IPK--AEKLIVFIP-----------------FHPPSLNPYLY 62 (335)
T ss_pred hhhhhHHHHHHHHHHhCCcEEEEecCCcc---------cCc--cceEEEEee-----------------cCCcccchHHh
Confidence 44557889999999999988888874421 110 010111111 11122222222
Q ss_pred H-HHhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhh
Q 016053 167 A-VLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELME 245 (396)
Q Consensus 167 ~-~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~ 245 (396)
. ....+- .+.+.++|.... ...+.+.+.+-+.++++|..+.+.+.+ .|++.. .+|+||+|.+.|.
T Consensus 63 ~~~~~~~~----~~~~tt~~g~~~---~~~y~~~m~~~~~vIavS~~t~~~L~~-----~G~~~~--i~I~~GVD~~~f~ 128 (335)
T PHA01633 63 AYYQFKGK----KYFYTTCDGIPN---IEIVNKYLLQDVKFIPNSKFSAENLQE-----VGLQVD--LPVFHGINFKIVE 128 (335)
T ss_pred hhhhhcCC----CceEEeeCCcCc---hHHHHHHHhcCCEEEeCCHHHHHHHHH-----hCCCCc--eeeeCCCChhhcC
Confidence 1 111111 346667776532 244556666667888889888877653 366544 3588999999887
Q ss_pred hhhhhHHHHHhHHHHHHHcCCC-CCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchH
Q 016053 246 VAEDNVAKRVLREHVRESLGVR-NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKF 324 (396)
Q Consensus 246 ~~~~~~~~~~~~~~~r~~~g~~-~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~ 324 (396)
+... ...++|++++.. ++.++|+++||+.++||++.+++|++++.+..++. ..+++++++|.+
T Consensus 129 p~~~------~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~---~~~i~l~ivG~~------- 192 (335)
T PHA01633 129 NAEK------LVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDI---AKKIHFFVISHK------- 192 (335)
T ss_pred ccch------hhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCc---cccEEEEEEcHH-------
Confidence 5421 123466666653 57789999999999999999999999987633110 014688888742
Q ss_pred HHHHHHHHHhcCCCCcEEEec---C--cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 325 ESELRNYVMQKKIQDRVHFVN---K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 325 ~~~l~~~~~~~~l~~~V~~~g---~--~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
..++++++++|+|+| . .+++.++|++||++|+||. .|+||++++||||||+|||+++.||..
T Consensus 193 ------~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~ 259 (335)
T PHA01633 193 ------QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLD 259 (335)
T ss_pred ------HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCce
Confidence 124567788999995 3 3689999999999999999 999999999999999999999998754
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=99.91 E-value=2.4e-23 Score=193.65 Aligned_cols=230 Identities=18% Similarity=0.176 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcEEEEcCchhhHHHHHHHh
Q 016053 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLDAVLK 170 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~ 170 (396)
++-.-+.++|+..|++|+++--.. +... .+.. +.+..+.|+.....+ .-
T Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~---------------~~~~--~~~~~~~~~~~~~~~----~~ 62 (331)
T PHA01630 14 RQKKLLEEHLKMLGHKVTVFEKPT----------LTKY---------------QLPP--GYPIYIYYTIFNSML----FW 62 (331)
T ss_pred HHHHHHHHHHHHhCCeeEEEeccc----------hhhh---------------hcCC--CCceeeehhhhhHHH----HH
Confidence 455666788999999999885211 1110 1111 334444554332221 11
Q ss_pred cCCCccccceeeeeeecccccCchhhhccc--cccccceeeccccHHHHHHHHHhhhccc-CCCEEEEecCCccchhhhh
Q 016053 171 EDVPRVLPNVLWWIHEMRGHYFKLDYVKHL--PLVAGAMIDSHVTAEYWKNRTRERLRIK-MPDTYVVHLGNSKELMEVA 247 (396)
Q Consensus 171 ~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~g~~-~~k~~vI~ngid~~~~~~~ 247 (396)
.+++..+.++++.+|+. ......+..+. ..++.+++.|..+.+.+.+ .+++ ++++.+||||+|.+.|.+.
T Consensus 63 ~~~~~~~~~~v~e~~~~--~~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~-----~g~~~~~~i~vIpNGVd~~~f~~~ 135 (331)
T PHA01630 63 KGIPHVGKNIVFEVADT--DAISHTALYFFRNQPVDEIVVPSQWSKNAFYT-----SGLKIPQPIYVIPHNLNPRMFEYK 135 (331)
T ss_pred hhccccCCceEEEEEee--chhhHHHHHHHhhccCCEEEECCHHHHHHHHH-----cCCCCCCCEEEECCCCCHHHcCCC
Confidence 23444456788888874 23344444444 5789999999988877653 3444 4679999999999887543
Q ss_pred hhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHH
Q 016053 248 EDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE 327 (396)
Q Consensus 248 ~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 327 (396)
.. -..+.++++++|++.++||++.+++|++++.+ +.++++++++|++. ....
T Consensus 136 ~~----------------~~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~-------~~~~~~llivG~~~-----~~~~ 187 (331)
T PHA01630 136 PK----------------EKPHPCVLAILPHSWDRKGGDIVVKIFHELQN-------EGYDFYFLIKSSNM-----LDPR 187 (331)
T ss_pred cc----------------ccCCCEEEEEeccccccCCHHHHHHHHHHHHh-------hCCCEEEEEEeCcc-----cchh
Confidence 11 01345677788899999999999999998865 33799999999764 1121
Q ss_pred HHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 328 LRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 328 l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
+. ++.+ +......+++.++|+.||++|+||. .|+||++++||||||+|||+|+.||.++
T Consensus 188 l~------~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E 246 (331)
T PHA01630 188 LF------GLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSE 246 (331)
T ss_pred hc------cccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchh
Confidence 11 2222 1111223799999999999999999 9999999999999999999999999764
No 65
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.91 E-value=2.1e-23 Score=199.01 Aligned_cols=206 Identities=18% Similarity=0.215 Sum_probs=154.5
Q ss_pred cCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccC--------ch---hhhccccccccceeeccccHHHH
Q 016053 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--------KL---DYVKHLPLVAGAMIDSHVTAEYW 217 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~--------~~---~~~~~~~~~~~~~~~s~~~~~~~ 217 (396)
.++|+++++.+....+........ .+.+.++|+.+.... .. .....+...+.+++.|....+.+
T Consensus 98 ~~~diii~~~~~~~~~~~~~~~~~-----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~l 172 (372)
T cd04949 98 TKPDVFILDRPTLDGQALLNMKKA-----AKVVVVLHSNHVSDNNDPVHSLINNFYEYVFENLDKVDGVIVATEQQKQDL 172 (372)
T ss_pred CCCCEEEECCccccchhHHhccCC-----ceEEEEEChHHhCCcccccccccchhhHHHHhChhhCCEEEEccHHHHHHH
Confidence 789999999876544411111111 235667776431111 10 11123456777888887777666
Q ss_pred HHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHH
Q 016053 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLE 297 (396)
Q Consensus 218 ~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~ 297 (396)
.+ .++.. .++.+||||++.+.+.+.. ....++..++++||+.+.||++.+++|+.++.+
T Consensus 173 ~~----~~~~~-~~v~~ip~g~~~~~~~~~~----------------~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~ 231 (372)
T cd04949 173 QK----QFGNY-NPIYTIPVGSIDPLKLPAQ----------------FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVK 231 (372)
T ss_pred HH----HhCCC-CceEEEcccccChhhcccc----------------hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHH
Confidence 54 33332 3489999999987664321 012456789999999999999999999999876
Q ss_pred HHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHH
Q 016053 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (396)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lE 377 (396)
++|+++|+|+|.|. ....+++.+++++++++|+|.|+.+++.++|+.||++|+||. .|+||++++|
T Consensus 232 -------~~~~~~l~i~G~g~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~--~Eg~~~~~lE 297 (372)
T cd04949 232 -------QVPDATLDIYGYGD-----EEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQ--SEGFGLSLME 297 (372)
T ss_pred -------hCCCcEEEEEEeCc-----hHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEeccc--ccccChHHHH
Confidence 34899999999986 567788888899999999999998999999999999999999 9999999999
Q ss_pred HHhcCCCEEEcCCC-CCC
Q 016053 378 AMAFQLPVLVLSEL-HPS 394 (396)
Q Consensus 378 Ama~G~PVI~t~~g-G~~ 394 (396)
||+||+|||+++.+ |++
T Consensus 298 Ama~G~PvI~~~~~~g~~ 315 (372)
T cd04949 298 ALSHGLPVISYDVNYGPS 315 (372)
T ss_pred HHhCCCCEEEecCCCCcH
Confidence 99999999999987 654
No 66
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.91 E-value=9.5e-24 Score=198.53 Aligned_cols=381 Identities=23% Similarity=0.154 Sum_probs=256.8
Q ss_pred CCCcCCCcccccccchHHHHHHHHHHHHHHHHHHHhhccCCCCC-CccccccccccccCCCcccCCCCCcccccccEEEE
Q 016053 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFFIRAALDPCDR-HLEVSDKKRVQSQSVPRIATKSSPLSFMKSKLVLL 79 (396)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~kIl~ 79 (396)
|.+.+-+-|-+.++.+|..+.....+++|...-.....+.+|+. .--.+++......-.-+...... ++.+....+.+
T Consensus 1 ~~~~~~~~~~~~qk~~~~~m~~~~~~~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s~~~~lg-~~d~G~qV~~l 79 (495)
T KOG0853|consen 1 MTNDSSSNISELQKVLWKAMIEKSLLVSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLSGQDVLG-LPDTGGQVVYL 79 (495)
T ss_pred CcchhhhHHHHhhhhhhhhhhhhhcccccccccchhheeeccccccCchHHHhHHHHHHHHhcccccC-CCCCCceEEEE
Confidence 55656577888999999999888888888877777778888777 22222222110000000011112 44444456666
Q ss_pred EeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcEEEEcCc
Q 016053 80 VSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTA 159 (396)
Q Consensus 80 v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~ 159 (396)
+++....+ ++...+..+..|.-. .++.+++..-|.... ..+.......++.++.......+...++.|.+++...
T Consensus 80 ~~h~~al~-~~~~~~~~~~~l~~~-~~i~vv~~~lP~~~~---~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~ 154 (495)
T KOG0853|consen 80 TSHEDALE-MPLLLRCFAETLDGT-PPILVVGDWLPRAMG---QFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFV 154 (495)
T ss_pred ehhhhhhc-chHHHHHHHHHhcCC-CceEEEEeecCcccc---hhhhhhhccceeEEEEeccchhhhhhhhhceeecchH
Confidence 66666666 666776666665431 555555532221111 1234455566778877766444444478899999988
Q ss_pred hhhHHHHHHHhcCCCccccceeeeeeecccccCchh-h-h------------ccccccccceeeccccHHHHHHHHHhhh
Q 016053 160 VAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-Y-V------------KHLPLVAGAMIDSHVTAEYWKNRTRERL 225 (396)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~-~-~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 225 (396)
.+..++...... |....++.+++|+....+.++. . . ......+..++++..++..+.+.+.
T Consensus 155 ~~~~~l~~~~~~--p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~--- 229 (495)
T KOG0853|consen 155 SACVPLLKQLSG--PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFV--- 229 (495)
T ss_pred HHHHHHHHHhcC--CcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhh---
Confidence 777776655554 8888899999999876655442 1 1 1124677788888888877776644
Q ss_pred cccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccC
Q 016053 226 RIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLE 305 (396)
Q Consensus 226 g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~ 305 (396)
.++..++.+.+.++|.+.+.+.- .....+.+...|...+....+..+..+.++.+.||++.+++++..+...+++. .
T Consensus 230 ~L~~~d~~~~y~ei~~s~~~~~~-~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~--~ 306 (495)
T KOG0853|consen 230 SLSNSDITSTYPEIDGSWFTYGQ-YESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEP--S 306 (495)
T ss_pred hcCCCCcceeeccccchhccccc-cccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCC--C
Confidence 34555589999999988876410 01112334556677788777899999999999999999999999988776542 3
Q ss_pred CCCEEEEEEecC-----CCccchHHHHHHHHHHhcCC-CCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHH
Q 016053 306 VPSVHAVIIGSD-----MNAQTKFESELRNYVMQKKI-QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (396)
Q Consensus 306 ~~~~~l~ivG~g-----~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAm 379 (396)
.++.+++++|+. ..++..+.++++++++++++ .+.|.|+....+...|..++|....-+..-.|+||++++|||
T Consensus 307 ~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAM 386 (495)
T KOG0853|consen 307 ISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAM 386 (495)
T ss_pred CCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHH
Confidence 367899999944 34456688899999999988 577888888766666777776533222222699999999999
Q ss_pred hcCCCEEEcCCCCCCC
Q 016053 380 AFQLPVLVLSELHPSI 395 (396)
Q Consensus 380 a~G~PVI~t~~gG~~~ 395 (396)
+||+|||||+.|||.+
T Consensus 387 a~glPvvAt~~GGP~E 402 (495)
T KOG0853|consen 387 ACGLPVVATNNGGPAE 402 (495)
T ss_pred hcCCCEEEecCCCceE
Confidence 9999999999999964
No 67
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.89 E-value=1e-21 Score=186.38 Aligned_cols=255 Identities=14% Similarity=0.063 Sum_probs=166.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc-------------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG------------- 141 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 141 (396)
|||+++.. ..||.++...+++++|.++||+|++++..... ........|+++.....
T Consensus 2 ~~i~i~~~--g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 71 (357)
T PRK00726 2 KKILLAGG--GTGGHVFPALALAEELKKRGWEVLYLGTARGM--------EARLVPKAGIEFHFIPSGGLRRKGSLANLK 71 (357)
T ss_pred cEEEEEcC--cchHhhhHHHHHHHHHHhCCCEEEEEECCCch--------hhhccccCCCcEEEEeccCcCCCChHHHHH
Confidence 68888873 34788899999999999999999999864321 01111123444432211
Q ss_pred -----------hhhhhhccCCcEEEEcCchhhHHHHH-HHhcCCCccccceeeeeeecccccCchhhhccccccccceee
Q 016053 142 -----------QETINTALKADLIVLNTAVAGKWLDA-VLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (396)
Q Consensus 142 -----------~~~~~~~~~~DiV~~~~~~~~~~~~~-~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (396)
.+.+.+..+||+||+|+......... .+..+ .|++++.|.. +........+...+.+++.
T Consensus 72 ~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~-----~p~v~~~~~~---~~~~~~r~~~~~~d~ii~~ 143 (357)
T PRK00726 72 APFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLG-----IPLVIHEQNA---VPGLANKLLARFAKKVATA 143 (357)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcC-----CCEEEEcCCC---CccHHHHHHHHHhchheEC
Confidence 01233457899999998544333222 22233 3455544432 1111111233455666655
Q ss_pred ccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHH
Q 016053 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (396)
Q Consensus 210 s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li 289 (396)
+... . . . .+..++.+++||+|.+.+.+.. .+++++++++.++|+++|+....|++..++
T Consensus 144 ~~~~---~----~-~--~~~~~i~vi~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l 202 (357)
T PRK00726 144 FPGA---F----P-E--FFKPKAVVTGNPVREEILALAA-----------PPARLAGREGKPTLLVVGGSQGARVLNEAV 202 (357)
T ss_pred chhh---h----h-c--cCCCCEEEECCCCChHhhcccc-----------hhhhccCCCCCeEEEEECCcHhHHHHHHHH
Confidence 4421 1 1 1 4668899999999987654311 123567767788889999888888876655
Q ss_pred -HHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCC
Q 016053 290 -HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (396)
Q Consensus 290 -~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (396)
+|++++.+ . + ..++++|+|. . +.+.+..+ +++. |+|.|+++++.++|++||+++.+|-
T Consensus 203 ~~a~~~~~~-------~-~-~~~~~~G~g~-----~-~~~~~~~~-~~~~--v~~~g~~~~~~~~~~~~d~~i~~~g--- 261 (357)
T PRK00726 203 PEALALLPE-------A-L-QVIHQTGKGD-----L-EEVRAAYA-AGIN--AEVVPFIDDMAAAYAAADLVICRAG--- 261 (357)
T ss_pred HHHHHHhhh-------C-c-EEEEEcCCCc-----H-HHHHHHhh-cCCc--EEEeehHhhHHHHHHhCCEEEECCC---
Confidence 88877642 1 2 5678889885 3 44454455 6664 9999999999999999999997553
Q ss_pred CCccHHHHHHHhcCCCEEEcCCCC
Q 016053 369 ECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 369 E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+++++|||++|+|||++..+|
T Consensus 262 ---~~~~~Ea~~~g~Pvv~~~~~~ 282 (357)
T PRK00726 262 ---ASTVAELAAAGLPAILVPLPH 282 (357)
T ss_pred ---HHHHHHHHHhCCCEEEecCCC
Confidence 689999999999999998764
No 68
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.89 E-value=1.3e-21 Score=185.19 Aligned_cols=254 Identities=15% Similarity=0.133 Sum_probs=166.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEc--Cc------------
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--KG------------ 141 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------ 141 (396)
+|++.+ ...||..+...+++++|.++||+|++++...... .......++++... ..
T Consensus 1 ~~~~~~--~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (350)
T cd03785 1 RILIAG--GGTGGHIFPALALAEELRERGAEVLFLGTKRGLE--------ARLVPKAGIPLHTIPVGGLRRKGSLKKLKA 70 (350)
T ss_pred CEEEEe--cCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch--------hhcccccCCceEEEEecCcCCCChHHHHHH
Confidence 355555 3447888999999999999999999998543311 11111123333211 10
Q ss_pred ----------hhhhhhccCCcEEEEcCchhhHHHH-HHHhcCCCccccceeeeeeecccccCchhhhc-cccccccceee
Q 016053 142 ----------QETINTALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVK-HLPLVAGAMID 209 (396)
Q Consensus 142 ----------~~~~~~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (396)
...+.+..+||+||+|......... .+...++| ++++.|.. +.....+ .....+.+++.
T Consensus 71 ~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p-----~v~~~~~~----~~~~~~~~~~~~~~~vi~~ 141 (350)
T cd03785 71 PFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIP-----LVIHEQNA----VPGLANRLLARFADRVALS 141 (350)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCC-----EEEEcCCC----CccHHHHHHHHhhCEEEEc
Confidence 1122345789999999854433222 23334443 44333322 1111112 23346666666
Q ss_pred ccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHH-
Q 016053 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF- 288 (396)
Q Consensus 210 s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~l- 288 (396)
+....++ .+..++.+|+||+|.+.+.+. . .++++++++++++++++|+....|+.+.+
T Consensus 142 s~~~~~~----------~~~~~~~~i~n~v~~~~~~~~----------~-~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l 200 (350)
T cd03785 142 FPETAKY----------FPKDKAVVTGNPVREEILALD----------R-ERARLGLRPGKPTLLVFGGSQGARAINEAV 200 (350)
T ss_pred chhhhhc----------CCCCcEEEECCCCchHHhhhh----------h-hHHhcCCCCCCeEEEEECCcHhHHHHHHHH
Confidence 6554432 356789999999998766432 1 17788888888888888887777777654
Q ss_pred HHHHHHHHHHHHhhccCCCCEE-EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCC
Q 016053 289 LHSFYESLELIKEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAW 367 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~ 367 (396)
+++++.+.+ ++++ ++++|++ +.+++++.++++ .++|+|.|+++++.++|+.||++|.+|-
T Consensus 201 ~~a~~~l~~---------~~~~~~~i~G~g------~~~~l~~~~~~~--~~~v~~~g~~~~~~~~l~~ad~~v~~sg-- 261 (350)
T cd03785 201 PEALAELLR---------KRLQVIHQTGKG------DLEEVKKAYEEL--GVNYEVFPFIDDMAAAYAAADLVISRAG-- 261 (350)
T ss_pred HHHHHHhhc---------cCeEEEEEcCCc------cHHHHHHHHhcc--CCCeEEeehhhhHHHHHHhcCEEEECCC--
Confidence 577776642 4566 4577876 346677777766 4789999999999999999999997543
Q ss_pred CCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 368 GECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 368 ~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+++++|||++|+|||+++.+|
T Consensus 262 ----~~t~~Eam~~G~Pvv~~~~~~ 282 (350)
T cd03785 262 ----ASTVAELAALGLPAILIPLPY 282 (350)
T ss_pred ----HhHHHHHHHhCCCEEEeecCC
Confidence 689999999999999988654
No 69
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=4.8e-21 Score=183.25 Aligned_cols=275 Identities=10% Similarity=0.052 Sum_probs=174.3
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCc---hhhhh-hh----------hhhhhhcceEEEE
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEE---DEVIY-SL----------EHKMWDRGVQVIS 138 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~---~~~~~-~~----------~~~~~~~~~~~~~ 138 (396)
++||||+++... .+|.......++++|+++|++|.++.+.-.... ..... .+ ........-....
T Consensus 3 ~~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
T PRK13609 3 KNPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYD 81 (380)
T ss_pred CCCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccc
Confidence 557999999654 236679999999999999999777764322110 00000 00 0000000000000
Q ss_pred -----------cCchhhhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccce
Q 016053 139 -----------AKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAM 207 (396)
Q Consensus 139 -----------~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~ 207 (396)
......+.+..+||+||++.+....... ....+.+ .|++..++++ ........+.++.++
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~-~~~~~~~---ip~~~~~td~-----~~~~~~~~~~ad~i~ 152 (380)
T PRK13609 82 KKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPEL-KKQTGIS---IPTYNVLTDF-----CLHKIWVHREVDRYF 152 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHHH-HHhcCCC---CCeEEEeCCC-----CCCcccccCCCCEEE
Confidence 0112344456899999998775443221 1122221 3344333322 111223345788888
Q ss_pred eeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCE-EEEEEecccCCCCHH
Q 016053 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQD 286 (396)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~-~il~vG~l~~~Kg~~ 286 (396)
+.+....+.+. ++|++++++.+++++++....... .+..+++++++++++. ++++.|++...|+++
T Consensus 153 ~~s~~~~~~l~-----~~gi~~~ki~v~G~p~~~~f~~~~--------~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~ 219 (380)
T PRK13609 153 VATDHVKKVLV-----DIGVPPEQVVETGIPIRSSFELKI--------NPDIIYNKYQLCPNKKILLIMAGAHGVLGNVK 219 (380)
T ss_pred ECCHHHHHHHH-----HcCCChhHEEEECcccChHHcCcC--------CHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHH
Confidence 88877766554 457888888888766654322111 1234788899976654 555668888889999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCC
Q 016053 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA 366 (396)
Q Consensus 287 ~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~ 366 (396)
.+++++.+. ++++++++|++. ...++.+++.+++++ ++|+|+|+++++.++|++||++|.
T Consensus 220 ~li~~l~~~-----------~~~~~viv~G~~---~~~~~~l~~~~~~~~--~~v~~~g~~~~~~~l~~~aD~~v~---- 279 (380)
T PRK13609 220 ELCQSLMSV-----------PDLQVVVVCGKN---EALKQSLEDLQETNP--DALKVFGYVENIDELFRVTSCMIT---- 279 (380)
T ss_pred HHHHHHhhC-----------CCcEEEEEeCCC---HHHHHHHHHHHhcCC--CcEEEEechhhHHHHHHhccEEEe----
Confidence 999887531 689988875422 135677888877665 689999999999999999999883
Q ss_pred CCCCccHHHHHHHhcCCCEEEcC-CCC
Q 016053 367 WGECFGRITIEAMAFQLPVLVLS-ELH 392 (396)
Q Consensus 367 ~~E~fg~~~lEAma~G~PVI~t~-~gG 392 (396)
++.|++++|||+||+|||+++ .+|
T Consensus 280 --~~gg~t~~EA~a~g~PvI~~~~~~g 304 (380)
T PRK13609 280 --KPGGITLSEAAALGVPVILYKPVPG 304 (380)
T ss_pred --CCCchHHHHHHHhCCCEEECCCCCC
Confidence 345899999999999999986 555
No 70
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.88 E-value=2e-21 Score=186.51 Aligned_cols=234 Identities=17% Similarity=0.150 Sum_probs=153.9
Q ss_pred cCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecc-ccc--------Cc-------------hh-hh------cc
Q 016053 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR-GHY--------FK-------------LD-YV------KH 199 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~-~~~--------~~-------------~~-~~------~~ 199 (396)
.++|++|+|....+..+..+++...+ .+++++.|... +.+ +. .. .. ..
T Consensus 147 ~~~dViH~HeWm~g~a~~~lK~~~~~---VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~a 223 (590)
T cd03793 147 EPAVVAHFHEWQAGVGLPLLRKRKVD---VSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAA 223 (590)
T ss_pred CCCeEEEEcchhHhHHHHHHHHhCCC---CCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHH
Confidence 67999999998887766666654333 45888888642 111 10 00 01 11
Q ss_pred ccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHH---------HHhHHHHHHHcCCCCCC
Q 016053 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAK---------RVLREHVRESLGVRNED 270 (396)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~---------~~~~~~~r~~~g~~~~~ 270 (396)
...++.++++|..++..... .++.++++ |||||+|.+.|....+..+. +..+..++.++++++++
T Consensus 224 a~~Ad~fttVS~it~~E~~~----Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~ 297 (590)
T cd03793 224 AHCAHVFTTVSEITAYEAEH----LLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLDK 297 (590)
T ss_pred HhhCCEEEECChHHHHHHHH----HhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCCC
Confidence 23567777777777766553 56777665 99999999998765432211 11233467778888788
Q ss_pred EEEEE-EecccC-CCCHHHHHHHHHHHHHHHHhhccCCCC--E-EEEEEecCCCc-------cchHHH------------
Q 016053 271 LLFAI-INSVSR-GKGQDLFLHSFYESLELIKEKKLEVPS--V-HAVIIGSDMNA-------QTKFES------------ 326 (396)
Q Consensus 271 ~~il~-vG~l~~-~Kg~~~li~a~~~l~~~~~~~~~~~~~--~-~l~ivG~g~~~-------~~~~~~------------ 326 (396)
.+++| +||+.. +||+|.+|+|++++...++.. +.+ + -|+|+-....+ .+...+
T Consensus 298 tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~---~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~ 374 (590)
T cd03793 298 TLYFFTAGRYEFSNKGADMFLEALARLNYLLKVE---GSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEK 374 (590)
T ss_pred eEEEEEeeccccccCCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHH
Confidence 88877 799998 999999999999998777653 232 2 23333322110 001111
Q ss_pred -------------------------------------------------------HHHHHHHhcCCCC------cEEEec
Q 016053 327 -------------------------------------------------------ELRNYVMQKKIQD------RVHFVN 345 (396)
Q Consensus 327 -------------------------------------------------------~l~~~~~~~~l~~------~V~~~g 345 (396)
.+.+.+++.++.+ +|+|++
T Consensus 375 i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P 454 (590)
T cd03793 375 IGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHP 454 (590)
T ss_pred hhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcc
Confidence 1122222222332 356666
Q ss_pred Cc---------CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCCC
Q 016053 346 KT---------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSIW 396 (396)
Q Consensus 346 ~~---------~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~~ 396 (396)
.- .+..++++.||++|+||. +|+||++++||||||+|||+|+.+|-..|
T Consensus 455 ~~L~~~~~~~g~~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI~t~~~gf~~~ 512 (590)
T cd03793 455 EFLSSTNPLLGLDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSITTNLSGFGCF 512 (590)
T ss_pred cccCCCCCcCCcchHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEEEccCcchhhh
Confidence 31 458899999999999999 99999999999999999999999987443
No 71
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.88 E-value=3e-21 Score=186.44 Aligned_cols=235 Identities=14% Similarity=0.083 Sum_probs=150.8
Q ss_pred cCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc-------CchhhhccccccccceeeccccHHHHHHHH
Q 016053 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (396)
..-|+|++|+.........+.+. .|. .++.++.|...+.. ......+-+..+|.+-..+....+.+....
T Consensus 126 ~~~d~vwvhDYhl~l~p~~lr~~-~~~--~~igfFlHipfP~~e~f~~lp~r~~il~gll~~dligF~t~~~~~~Fl~~~ 202 (456)
T TIGR02400 126 QPGDIVWVHDYHLMLLPAMLREL-GVQ--NKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVGFQTYDDARNFLSAV 202 (456)
T ss_pred CCCCEEEEecchhhHHHHHHHhh-CCC--CeEEEEEeCCCCChHHHhhCCcHHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 44589999997655444444443 333 45777888542111 111122333345555555544444444433
Q ss_pred Hhhhcc-----------cCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHH
Q 016053 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (396)
Q Consensus 222 ~~~~g~-----------~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~ 290 (396)
.+..|. ...++.++|||||++.|.+.............+|+++ .++++|+++||+.+.||++.+++
T Consensus 203 ~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~vIl~VgRLd~~KGi~~ll~ 279 (456)
T TIGR02400 203 SRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL---KGRKLIIGVDRLDYSKGLPERLL 279 (456)
T ss_pred HHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc---CCCeEEEEccccccccCHHHHHH
Confidence 322332 3346889999999999976532222122234577776 36789999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhc--------CCCC--cEEEecC---cCCHHHHHHHc
Q 016053 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK--------KIQD--RVHFVNK---TLTVAPYLAAI 357 (396)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~--------~l~~--~V~~~g~---~~~~~~~~~~a 357 (396)
|++++.+..++. ..++.|+++|....++.+.+.++++.++++ +..+ .+++++. .+++.++|++|
T Consensus 280 A~~~ll~~~p~~---~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aa 356 (456)
T TIGR02400 280 AFERFLEEHPEW---RGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAA 356 (456)
T ss_pred HHHHHHHhCccc---cCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhC
Confidence 999987633210 013668888632222223455555555543 1111 1555553 38899999999
Q ss_pred CEEEecCCCCCCCccHHHHHHHhcCCC----EEEcCCCCCC
Q 016053 358 DVLVQNSQAWGECFGRITIEAMAFQLP----VLVLSELHPS 394 (396)
Q Consensus 358 Dv~v~pS~~~~E~fg~~~lEAma~G~P----VI~t~~gG~~ 394 (396)
|++|+||. .||||++++||||||+| ||+|+.+|++
T Consensus 357 Dv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~ 395 (456)
T TIGR02400 357 DVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLILSEFAGAA 395 (456)
T ss_pred cEEEECcc--ccccCccHHHHHHhcCCCCceEEEeCCCCCh
Confidence 99999999 99999999999999999 9999988864
No 72
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.88 E-value=3.6e-21 Score=169.89 Aligned_cols=211 Identities=25% Similarity=0.224 Sum_probs=148.9
Q ss_pred EEEEeccCC--CCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcEE
Q 016053 77 VLLVSHELS--LSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (396)
Q Consensus 77 Il~v~~~~~--~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (396)
|+++++... .||.++....+++.|+++||+|+++.. +.. .........+||+|
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~v~~~------------~~~-------------~~~~~~~~~~~D~i 55 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRGHEVEVVAL------------LLL-------------LLLRILRGFKPDVV 55 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcCCeEEEEEe------------chH-------------HHHHHHhhcCCCEE
Confidence 455665544 588889999999999999999999980 000 11122235799999
Q ss_pred EEcCchhhHHHH--HHHhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHHHHHhhhcccCCCE
Q 016053 155 VLNTAVAGKWLD--AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDT 232 (396)
Q Consensus 155 ~~~~~~~~~~~~--~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~ 232 (396)
|+|+........ .....+ .+++++.|+........... ......
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~-----~~~i~~~h~~~~~~~~~~~~-----------------~~~~~~------------ 101 (229)
T cd01635 56 HAHGYYPAPLALLLAARLLG-----IPLVLTVHGVNRSLLEGVPL-----------------SLLALS------------ 101 (229)
T ss_pred EEcCCCcHHHHHHHHHhhCC-----CCEEEEEcCccHhhcccCcH-----------------HHHHHH------------
Confidence 999976555432 222222 55888888763221110000 000000
Q ss_pred EEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEE
Q 016053 233 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAV 312 (396)
Q Consensus 233 ~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ 312 (396)
. ......++|++.+.||++.+++++..+.+ +.++++++
T Consensus 102 ---------------------------~--------~~~~~~~~g~~~~~k~~~~~~~a~~~l~~-------~~~~~~~~ 139 (229)
T cd01635 102 ---------------------------I--------GLADKVFVGRLAPEKGLDDLIEAFALLKE-------RGPDLKLV 139 (229)
T ss_pred ---------------------------H--------hhcceEEEEeecccCCHHHHHHHHHHHHH-------hCCCeEEE
Confidence 0 00011199999999999999999999875 33799999
Q ss_pred EEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc---CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 313 IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 313 ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~---~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
++|.+. .....++.+.+.+..++|.++|.. +++..+++.||+++.||. .|++|++++|||+||+|+|+|+
T Consensus 140 i~G~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~ 212 (229)
T cd01635 140 IAGDGP-----EREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATD 212 (229)
T ss_pred EEeCCC-----ChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcC
Confidence 999986 444445546677788899999983 566667777999999999 9999999999999999999999
Q ss_pred CCCCCC
Q 016053 390 ELHPSI 395 (396)
Q Consensus 390 ~gG~~~ 395 (396)
.++.++
T Consensus 213 ~~~~~e 218 (229)
T cd01635 213 VGGPPE 218 (229)
T ss_pred CCCcce
Confidence 998764
No 73
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.88 E-value=1.4e-21 Score=190.22 Aligned_cols=235 Identities=14% Similarity=0.081 Sum_probs=148.3
Q ss_pred cCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc--Cc-----hhhhccccccccceeeccccHHHHHHHH
Q 016053 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--FK-----LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~--~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (396)
..-|+||+|+.........+.+. .+. .++.++.|...+.. +. ....+.+..+|.+...+......+.+..
T Consensus 130 ~~~d~iwihDyhl~llp~~lr~~-~~~--~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~ 206 (460)
T cd03788 130 RPGDLVWVHDYHLLLLPQMLRER-GPD--ARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCC 206 (460)
T ss_pred CCCCEEEEeChhhhHHHHHHHhh-CCC--CeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHH
Confidence 46799999997655444444433 232 46888888652111 00 0112222234444444433333333322
Q ss_pred Hhhhcc------------cCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHH
Q 016053 222 RERLRI------------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (396)
Q Consensus 222 ~~~~g~------------~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li 289 (396)
....+. ...++.++|||||.+.|.+.... ...++.+++..+..+++++|+++||+.+.||++.++
T Consensus 207 ~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll 283 (460)
T cd03788 207 SRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAAS---PEVQERAAELRERLGGRKLIVGVDRLDYSKGIPERL 283 (460)
T ss_pred HHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcC---chhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHH
Confidence 222221 22468999999999998754321 111233444445557889999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEecCCCccc----hHHHHHHHHHHhcCCC------CcEEEe-cC--cCCHHHHHHH
Q 016053 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT----KFESELRNYVMQKKIQ------DRVHFV-NK--TLTVAPYLAA 356 (396)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~----~~~~~l~~~~~~~~l~------~~V~~~-g~--~~~~~~~~~~ 356 (396)
+|++.+.+..++. ..+++|+++|.+..++. ++.+++++++.+++.. ..|+++ |. .+++.++|+.
T Consensus 284 ~A~~~ll~~~p~~---~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~ 360 (460)
T cd03788 284 LAFERLLERYPEW---RGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRA 360 (460)
T ss_pred HHHHHHHHhChhh---cCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHh
Confidence 9999887643210 01378998976532222 2444555555443221 235555 54 3899999999
Q ss_pred cCEEEecCCCCCCCccHHHHHHHhcCCC----EEEcCCCCCC
Q 016053 357 IDVLVQNSQAWGECFGRITIEAMAFQLP----VLVLSELHPS 394 (396)
Q Consensus 357 aDv~v~pS~~~~E~fg~~~lEAma~G~P----VI~t~~gG~~ 394 (396)
||++|+||. .||||++++||||||+| ||+|+.+|.+
T Consensus 361 aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~ 400 (460)
T cd03788 361 ADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAA 400 (460)
T ss_pred ccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccch
Confidence 999999999 99999999999999999 9999988864
No 74
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.87 E-value=1.4e-20 Score=177.95 Aligned_cols=253 Identities=15% Similarity=0.164 Sum_probs=159.9
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcC--c-----------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--G----------- 141 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------- 141 (396)
|||+++... .||......+|+++|.++||+|++++...... .......|+++.... .
T Consensus 1 ~~i~~~~g~--~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--------~~~~~~~g~~~~~i~~~~~~~~~~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGG--TGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--------KRLVPKAGIEFYFIPVGGLRRKGSFRLIK 70 (348)
T ss_pred CeEEEEeCc--cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--------hcccccCCCceEEEeccCcCCCChHHHHH
Confidence 378888743 35555666799999999999999998533210 011111244332211 0
Q ss_pred -----------hhhhhhccCCcEEEEcCchhhHHHHH-HHhcCCCccccceeeeeeecccccCchhhhccccccccceee
Q 016053 142 -----------QETINTALKADLIVLNTAVAGKWLDA-VLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (396)
Q Consensus 142 -----------~~~~~~~~~~DiV~~~~~~~~~~~~~-~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (396)
...+.+..+||+||+|.......... ....++| ++++.+. ...........+..+.+++.
T Consensus 71 ~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p-----~v~~~~~---~~~~~~~~~~~~~~d~ii~~ 142 (348)
T TIGR01133 71 TPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIP-----LFHHEQN---AVPGLTNKLLSRFAKKVLIS 142 (348)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCC-----EEEECCC---CCccHHHHHHHHHhCeeEEC
Confidence 12233557899999998654433332 2333433 4432221 11111112233467777777
Q ss_pred ccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHH-H
Q 016053 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDL-F 288 (396)
Q Consensus 210 s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~-l 288 (396)
+....+++ +..+|+||+|...+.+.. .++.++++++.++|+++|+....|++.. +
T Consensus 143 ~~~~~~~~-------------~~~~i~n~v~~~~~~~~~-----------~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l 198 (348)
T TIGR01133 143 FPGAKDHF-------------EAVLVGNPVRQEIRSLPV-----------PRERFGLREGKPTILVLGGSQGAKILNELV 198 (348)
T ss_pred chhHhhcC-------------CceEEcCCcCHHHhcccc-----------hhhhcCCCCCCeEEEEECCchhHHHHHHHH
Confidence 66554331 247999999876654221 1335788788899999998777888765 4
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEE-EEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCC
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAV-IIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAW 367 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~-ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~ 367 (396)
++|++.+.+ .+++++ ++|++ ..+.+++.++++++.+.+.|. .. ++.++|++||++|.+|
T Consensus 199 ~~a~~~l~~---------~~~~~~~~~g~~------~~~~l~~~~~~~~l~~~v~~~-~~-~~~~~l~~ad~~v~~~--- 258 (348)
T TIGR01133 199 PKALAKLAE---------KGIQIVHQTGKN------DLEKVKNVYQELGIEAIVTFI-DE-NMAAAYAAADLVISRA--- 258 (348)
T ss_pred HHHHHHHhh---------cCcEEEEECCcc------hHHHHHHHHhhCCceEEecCc-cc-CHHHHHHhCCEEEECC---
Confidence 578776643 345554 44443 346788888888876666666 33 8999999999999743
Q ss_pred CCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 368 GECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 368 ~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+ |++++|||++|+|+|+++.+|
T Consensus 259 --g-~~~l~Ea~~~g~Pvv~~~~~~ 280 (348)
T TIGR01133 259 --G-ASTVAELAAAGVPAILIPYPY 280 (348)
T ss_pred --C-hhHHHHHHHcCCCEEEeeCCC
Confidence 2 789999999999999998865
No 75
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=4e-20 Score=176.85 Aligned_cols=301 Identities=19% Similarity=0.157 Sum_probs=205.4
Q ss_pred cEEEEEeccCCC----CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhh-------------------hhhh
Q 016053 75 KLVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH-------------------KMWD 131 (396)
Q Consensus 75 ~kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~-------------------~~~~ 131 (396)
|||++++.+..+ ||-.-.+..|.++|++.|++|.|+.+.-+.-.......+.. ....
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 589998877433 88889999999999999999999996544211111110000 0001
Q ss_pred cceEEEEcCchhhhh----------------------------hc---cCCcEEEEcCchhhHHHHHHHhcCCCccccce
Q 016053 132 RGVQVISAKGQETIN----------------------------TA---LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNV 180 (396)
Q Consensus 132 ~~~~~~~~~~~~~~~----------------------------~~---~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~v 180 (396)
.+++++-........ .. ..|||||+|+...+.....++.........+.
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~t 160 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPT 160 (487)
T ss_pred CCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcccccccCCe
Confidence 112221111100000 01 36999999997766654544443211223679
Q ss_pred eeeeeecc--cccC---------chh---------------hhccccccccceeeccccHHHHHHHHHhhh--------c
Q 016053 181 LWWIHEMR--GHYF---------KLD---------------YVKHLPLVAGAMIDSHVTAEYWKNRTRERL--------R 226 (396)
Q Consensus 181 v~~~h~~~--~~~~---------~~~---------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--------g 226 (396)
++++|+.. +.+. +.. .+..+..++.+.++|.+.+..+... .+ .
T Consensus 161 VfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptYa~Ei~t~---~~g~gl~g~l~ 237 (487)
T COG0297 161 VFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTYAGEIYTP---EYGEGLEGLLS 237 (487)
T ss_pred EEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHHHHhhccc---cccccchhhhh
Confidence 99999864 1111 000 0112235666777777666554411 11 1
Q ss_pred ccCCCEEEEecCCccchhhhhhhhH-----------HHHHhHHHHHHHcCCCC--CCEEEEEEecccCCCCHHHHHHHHH
Q 016053 227 IKMPDTYVVHLGNSKELMEVAEDNV-----------AKRVLREHVRESLGVRN--EDLLFAIINSVSRGKGQDLFLHSFY 293 (396)
Q Consensus 227 ~~~~k~~vI~ngid~~~~~~~~~~~-----------~~~~~~~~~r~~~g~~~--~~~~il~vG~l~~~Kg~~~li~a~~ 293 (396)
....++.-|.||+|.+.+.|..++. .+..++..+++++|++. +.+++.++||+..+||+|.+++++.
T Consensus 238 ~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~ 317 (487)
T COG0297 238 WRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAID 317 (487)
T ss_pred hccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHH
Confidence 2236689999999999887764421 25677889999999973 5699999999999999999999999
Q ss_pred HHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEe-cCc-CCHHHHHHHcCEEEecCCCCCCCc
Q 016053 294 ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV-NKT-LTVAPYLAAIDVLVQNSQAWGECF 371 (396)
Q Consensus 294 ~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~-g~~-~~~~~~~~~aDv~v~pS~~~~E~f 371 (396)
.+.+ ..+++++.|.| ++.+++.+..+++++.. ++... |+. .-....|+.+|++++||+ .|+|
T Consensus 318 ~~l~---------~~~~~vilG~g---d~~le~~~~~la~~~~~--~~~~~i~~~~~la~~i~agaD~~lmPSr--fEPc 381 (487)
T COG0297 318 ELLE---------QGWQLVLLGTG---DPELEEALRALASRHPG--RVLVVIGYDEPLAHLIYAGADVILMPSR--FEPC 381 (487)
T ss_pred HHHH---------hCceEEEEecC---cHHHHHHHHHHHHhcCc--eEEEEeeecHHHHHHHHhcCCEEEeCCc--CcCC
Confidence 9876 45999999998 35588899999998764 44443 444 346788999999999999 9999
Q ss_pred cHHHHHHHhcCCCEEEcCCCCCC
Q 016053 372 GRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 372 g~~~lEAma~G~PVI~t~~gG~~ 394 (396)
|++-++||+.|+++|+..+||-+
T Consensus 382 GL~ql~amryGtvpIv~~tGGLa 404 (487)
T COG0297 382 GLTQLYAMRYGTLPIVRETGGLA 404 (487)
T ss_pred cHHHHHHHHcCCcceEcccCCcc
Confidence 99999999999999999999964
No 76
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.86 E-value=2.4e-20 Score=181.07 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=166.3
Q ss_pred ChHHHHHHHHHHHHhCCCEEEE--EeccCCCCchhhhhhhhhhhhhcceE--EEEcCch---hhhhhccCCcEEEEcCch
Q 016053 88 GGPLLLMELAFLLRGVGTKVNW--ITIQKPSEEDEVIYSLEHKMWDRGVQ--VISAKGQ---ETINTALKADLIVLNTAV 160 (396)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~v--i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~DiV~~~~~~ 160 (396)
|-...+..|++.|++++.++.+ .+..... .. ........++. .++.... +.+.+..+||++|++...
T Consensus 61 Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~--~~----~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~~~~~ 134 (425)
T PRK05749 61 GETRAAIPLIRALRKRYPDLPILVTTMTPTG--SE----RAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVIIMETE 134 (425)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEeCCCccH--HH----HHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEEEecc
Confidence 4449999999999998755443 3222111 11 11111111233 3343332 355567899999987432
Q ss_pred h-hHHHHHHHhcCCCccccceeeeeeeccccc------CchhhhccccccccceeeccccHHHHHHHHHhhhcccCCCEE
Q 016053 161 A-GKWLDAVLKEDVPRVLPNVLWWIHEMRGHY------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTY 233 (396)
Q Consensus 161 ~-~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~ 233 (396)
. ...+..+...++| ++...|...... +.......++.++.+++.|....+.+. .+|++.+ +.
T Consensus 135 ~~~~~l~~~~~~~ip-----~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~-----~~g~~~~-i~ 203 (425)
T PRK05749 135 LWPNLIAELKRRGIP-----LVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFL-----ALGAKNE-VT 203 (425)
T ss_pred hhHHHHHHHHHCCCC-----EEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCCC-cE
Confidence 1 1223334455554 333333221111 111223345677888888888777655 4577666 88
Q ss_pred EEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEE
Q 016053 234 VVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVI 313 (396)
Q Consensus 234 vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~i 313 (396)
+++|+ +.+.+.+... ......++++++ +++++++++|+ ..|+.+.+++|++++.+ ++|+++|+|
T Consensus 204 vi~n~-~~d~~~~~~~----~~~~~~~r~~~~--~~~~vil~~~~--~~~~~~~ll~A~~~l~~-------~~~~~~lii 267 (425)
T PRK05749 204 VTGNL-KFDIEVPPEL----AARAATLRRQLA--PNRPVWIAAST--HEGEEELVLDAHRALLK-------QFPNLLLIL 267 (425)
T ss_pred ecccc-cccCCCChhh----HHHHHHHHHHhc--CCCcEEEEeCC--CchHHHHHHHHHHHHHH-------hCCCcEEEE
Confidence 88885 3332221111 112455777777 45667777776 36889999999998765 348999999
Q ss_pred EecCCCccchHH-HHHHHHHHhcCCCC-------------cEEEecCcCCHHHHHHHcCEEEe-cCCCCCCCccHHHHHH
Q 016053 314 IGSDMNAQTKFE-SELRNYVMQKKIQD-------------RVHFVNKTLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEA 378 (396)
Q Consensus 314 vG~g~~~~~~~~-~~l~~~~~~~~l~~-------------~V~~~g~~~~~~~~~~~aDv~v~-pS~~~~E~fg~~~lEA 378 (396)
+|+|+ .+ ++++++++++|+.. +|.+.+...|+..+|+.||++++ +|. .|++|.+++||
T Consensus 268 vG~g~-----~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~--~e~~g~~~lEA 340 (425)
T PRK05749 268 VPRHP-----ERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL--VKRGGHNPLEP 340 (425)
T ss_pred cCCCh-----hhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc--CCCCCCCHHHH
Confidence 99986 43 67899999888752 34444455789999999999655 677 89999999999
Q ss_pred HhcCCCEEEcCC
Q 016053 379 MAFQLPVLVLSE 390 (396)
Q Consensus 379 ma~G~PVI~t~~ 390 (396)
||||+|||+++.
T Consensus 341 ma~G~PVI~g~~ 352 (425)
T PRK05749 341 AAFGVPVISGPH 352 (425)
T ss_pred HHhCCCEEECCC
Confidence 999999999765
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.84 E-value=1.7e-19 Score=172.48 Aligned_cols=212 Identities=15% Similarity=0.051 Sum_probs=142.1
Q ss_pred hhhhccCCcEEEEcCchh----hHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHH
Q 016053 144 TINTALKADLIVLNTAVA----GKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKN 219 (396)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~----~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 219 (396)
.+.+..+||+||++.+.. ...+....+.+. ...|++..+.++ ......+..+.++.+++.|....+.+.
T Consensus 94 ~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~--~~~p~~~~~tD~----~~~~~~w~~~~~d~~~~~s~~~~~~l~- 166 (382)
T PLN02605 94 KGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELG--KKIPFTTVVTDL----GTCHPTWFHKGVTRCFCPSEEVAKRAL- 166 (382)
T ss_pred HHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccC--CCCCEEEEECCC----CCcCcccccCCCCEEEECCHHHHHHHH-
Confidence 344557999999987652 222222221111 113444444433 111223334678888877766655544
Q ss_pred HHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHH
Q 016053 220 RTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELI 299 (396)
Q Consensus 220 ~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~ 299 (396)
+.|++++++.+++++++.+.+.+.. .+.++|+++|++++.++|+++|+....|++..+++++..+....
T Consensus 167 ----~~g~~~~ki~v~g~~v~~~f~~~~~-------~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~ 235 (382)
T PLN02605 167 ----KRGLEPSQIRVYGLPIRPSFARAVR-------PKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDK 235 (382)
T ss_pred ----HcCCCHHHEEEECcccCHhhccCCC-------CHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccc
Confidence 4588888999999998876543221 24568999999999999999999999999999999987643100
Q ss_pred HhhccCCCCEE-EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHH
Q 016053 300 KEKKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (396)
Q Consensus 300 ~~~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEA 378 (396)
.. +.++.+ ++++|.+. ..++.+++. ....+|+|+|+++++.++|++||++|.++ .|++++||
T Consensus 236 ~~---~~~~~~~~vi~G~~~----~~~~~L~~~----~~~~~v~~~G~~~~~~~l~~aaDv~V~~~------g~~ti~EA 298 (382)
T PLN02605 236 NL---GKPIGQVVVICGRNK----KLQSKLESR----DWKIPVKVRGFVTNMEEWMGACDCIITKA------GPGTIAEA 298 (382)
T ss_pred cc---cCCCceEEEEECCCH----HHHHHHHhh----cccCCeEEEeccccHHHHHHhCCEEEECC------CcchHHHH
Confidence 00 014565 66777652 234445443 22357999999999999999999999744 37899999
Q ss_pred HhcCCCEEEcCC
Q 016053 379 MAFQLPVLVLSE 390 (396)
Q Consensus 379 ma~G~PVI~t~~ 390 (396)
|+||+|||+++.
T Consensus 299 ma~g~PvI~~~~ 310 (382)
T PLN02605 299 LIRGLPIILNGY 310 (382)
T ss_pred HHcCCCEEEecC
Confidence 999999999984
No 78
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.83 E-value=8.4e-20 Score=154.70 Aligned_cols=125 Identities=24% Similarity=0.409 Sum_probs=110.1
Q ss_pred HHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcC
Q 016053 257 REHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (396)
Q Consensus 257 ~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (396)
++..+...+.++++++|+++|++.+.||++.+++++..+.+.. .++++++|+|.+. +...++..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~------~~~~~l~i~G~~~-----~~~~~~~~~~~~~ 70 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKK------NPNYKLVIVGDGE-----YKKELKNLIEKLN 70 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHH------HTTEEEEEESHCC-----HHHHHHHHHHHTT
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhc------CCCeEEEEEcccc-----ccccccccccccc
Confidence 5678888999999999999999999999999999999987531 1799999999765 7888999999999
Q ss_pred CCCcEEEecCcC--CHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 337 IQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 337 l~~~V~~~g~~~--~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
+.++++|+|..+ ++.++|+.||++|+||. .|+||++++|||+||+|||+++.||+.
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~ 128 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNN 128 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHH
T ss_pred ccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCc
Confidence 999999999975 99999999999999999 999999999999999999999988753
No 79
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.81 E-value=2.1e-18 Score=165.18 Aligned_cols=274 Identities=12% Similarity=0.092 Sum_probs=162.5
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCC---CEEEEEe---ccCCCCchhhhhhhhh----------hhhhcceEEE
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVG---TKVNWIT---IQKPSEEDEVIYSLEH----------KMWDRGVQVI 137 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G---~~V~vi~---~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 137 (396)
+||||+++... .+|.......|.++|.+.| ++|.++- ...+.........+.. .+....-...
T Consensus 5 ~~~vlil~~~~-G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~Y~~~~~~~p~~y~~~y~~~~~~~ 83 (391)
T PRK13608 5 NKKILIITGSF-GNGHMQVTQSIVNQLNDMNLDHLSVIEHDLFMEAHPILTSICKKWYINSFKYFRNMYKGFYYSRPDKL 83 (391)
T ss_pred CceEEEEECCC-CchHHHHHHHHHHHHHhhCCCCceEEEeehHHhcCchHHHHHHHHHHHHHHHhHHHHHHHHHcCchhh
Confidence 46899999432 3455699999999998875 4555443 1112111100000100 0000000000
Q ss_pred --------EcCchhhhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceee
Q 016053 138 --------SAKGQETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (396)
Q Consensus 138 --------~~~~~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (396)
.......+.+..+||+|+++.+.... ..++..+. ...|++....+. .....+..+..+.+++.
T Consensus 84 ~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~~~--~~l~~~~~--~~iP~~~v~td~-----~~~~~w~~~~~d~~~v~ 154 (391)
T PRK13608 84 DKCFYKYYGLNKLINLLIKEKPDLILLTFPTPVM--SVLTEQFN--INIPVATVMTDY-----RLHKNWITPYSTRYYVA 154 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCEEEECCcHHHH--HHHHHhcC--CCCCEEEEeCCC-----CcccccccCCCCEEEEC
Confidence 00122344456899999998775432 22222111 112343222222 11112233567777777
Q ss_pred ccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCE-EEEEEecccCCCCHHHH
Q 016053 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVSRGKGQDLF 288 (396)
Q Consensus 210 s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~-~il~vG~l~~~Kg~~~l 288 (396)
+....+.+. +.|++.+++.+++++++....... .+...++++|++++++ ++++.|++...||++.+
T Consensus 155 s~~~~~~l~-----~~gi~~~ki~v~GiPv~~~f~~~~--------~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~l 221 (391)
T PRK13608 155 TKETKQDFI-----DVGIDPSTVKVTGIPIDNKFETPI--------DQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTM 221 (391)
T ss_pred CHHHHHHHH-----HcCCCHHHEEEECeecChHhcccc--------cHHHHHHHcCCCCCCCEEEEECCCcccchhHHHH
Confidence 777666554 347888889998888764432211 1345678899976655 45668999889999999
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCC
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (396)
++++.+ ..+++++++++++. .+..+++++. .+..++|+++|+++++.++|++||++|.
T Consensus 222 i~~~~~----------~~~~~~~vvv~G~~---~~l~~~l~~~---~~~~~~v~~~G~~~~~~~~~~~aDl~I~------ 279 (391)
T PRK13608 222 ITDILA----------KSANAQVVMICGKS---KELKRSLTAK---FKSNENVLILGYTKHMNEWMASSQLMIT------ 279 (391)
T ss_pred HHHHHh----------cCCCceEEEEcCCC---HHHHHHHHHH---hccCCCeEEEeccchHHHHHHhhhEEEe------
Confidence 998632 12678887665332 1123344433 3444689999999999999999999995
Q ss_pred CCccHHHHHHHhcCCCEEEcC-CCC
Q 016053 369 ECFGRITIEAMAFQLPVLVLS-ELH 392 (396)
Q Consensus 369 E~fg~~~lEAma~G~PVI~t~-~gG 392 (396)
++.|+++.|||++|+|+|+++ .+|
T Consensus 280 k~gg~tl~EA~a~G~PvI~~~~~pg 304 (391)
T PRK13608 280 KPGGITISEGLARCIPMIFLNPAPG 304 (391)
T ss_pred CCchHHHHHHHHhCCCEEECCCCCC
Confidence 235899999999999999996 444
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.80 E-value=1.7e-18 Score=177.40 Aligned_cols=230 Identities=13% Similarity=0.093 Sum_probs=146.9
Q ss_pred CCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc--C-----chhhhccccccccceeeccccHHHHHHHHH
Q 016053 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--F-----KLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (396)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~--~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (396)
.=|+|++|+......-..+.+. .|. .++.++.|...+.. | .....+-+..+|.+-..+...++.+.+...
T Consensus 147 ~~d~vWvhDYhL~llp~~lR~~-~~~--~~igfFlHiPFPs~e~fr~lp~r~~il~gll~aDligF~t~~y~r~Fl~~~~ 223 (797)
T PLN03063 147 EGDVVWCHDYHLMFLPQYLKEY-NNK--MKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTYDFARHFLSACT 223 (797)
T ss_pred CCCEEEEecchhhhHHHHHHHh-CCC--CcEEEEecCCCCCHHHHhhCCCHHHHHHHHhcCCEEEeCCHHHHHHHHHHHH
Confidence 3489999996554444444443 443 46788888653211 1 111222233444444444444444443332
Q ss_pred hhhcc-----------cCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHH
Q 016053 223 ERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (396)
Q Consensus 223 ~~~g~-----------~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a 291 (396)
...+. ...++.++|||||.+.|.+.............+++.++ ++.+|+++||+.+.||++.+++|
T Consensus 224 r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~A 300 (797)
T PLN03063 224 RILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFA---GRKVILGVDRLDMIKGIPQKYLA 300 (797)
T ss_pred HHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcC---CCeEEEEecccccccCHHHHHHH
Confidence 22222 22468899999999988654322111222335566554 56789999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCE----EEEEEecCCCccchHHHHHHHHHHhcC--CCCc--------EEEec-Cc--CCHHHHH
Q 016053 292 FYESLELIKEKKLEVPSV----HAVIIGSDMNAQTKFESELRNYVMQKK--IQDR--------VHFVN-KT--LTVAPYL 354 (396)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~----~l~ivG~g~~~~~~~~~~l~~~~~~~~--l~~~--------V~~~g-~~--~~~~~~~ 354 (396)
++.+.+.. |++ .|+.++....++.+.++++++.++++. ++.+ |++++ .. +++..+|
T Consensus 301 fe~lL~~~-------P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly 373 (797)
T PLN03063 301 FEKFLEEN-------PEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALY 373 (797)
T ss_pred HHHHHHhC-------ccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHH
Confidence 99987633 554 455444322123345566777776653 3222 33443 32 7899999
Q ss_pred HHcCEEEecCCCCCCCccHHHHHHHhcCCC----EEEcCCCCCC
Q 016053 355 AAIDVLVQNSQAWGECFGRITIEAMAFQLP----VLVLSELHPS 394 (396)
Q Consensus 355 ~~aDv~v~pS~~~~E~fg~~~lEAma~G~P----VI~t~~gG~~ 394 (396)
++||++|+||. .||||++++||||||+| +|.|+.+|++
T Consensus 374 ~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~ 415 (797)
T PLN03063 374 AITDVMLVTSL--RDGMNLVSYEFVACQKAKKGVLVLSEFAGAG 415 (797)
T ss_pred HhCCEEEeCcc--ccccCcchhhHheeecCCCCCEEeeCCcCch
Confidence 99999999999 99999999999999999 9999999874
No 81
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.80 E-value=1.1e-18 Score=166.25 Aligned_cols=266 Identities=15% Similarity=0.038 Sum_probs=163.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCC-CCchhhhhhhhhhhhhcceEEEE----------------
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP-SEEDEVIYSLEHKMWDRGVQVIS---------------- 138 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------- 138 (396)
+++++.+....+.....-..++..|.++|+.|..+..... ...... ......+..
T Consensus 5 ~~~~~~~~~~w~~~~~~~qhl~~~~a~~~~~vl~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (373)
T cd04950 5 PDILVFSADDWDFLWQRPQHLAARLAERGNRVLYVEPPGLSRTPQPR--------GRDWVRVVLRLRAALRRPRRLDPLI 76 (373)
T ss_pred CeEEEecccCcCCCCCCHHHHHHHHHhCCCeEEEEeCCCccCCCCCC--------CcccEEeeecccccccCccccCccc
Confidence 3445554455566678888999999989999999985432 100000 000111110
Q ss_pred --cCc---hh----hh-----hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccC--chh----hhc
Q 016053 139 --AKG---QE----TI-----NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYF--KLD----YVK 198 (396)
Q Consensus 139 --~~~---~~----~~-----~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~--~~~----~~~ 198 (396)
... .+ .+ ....+..+++.+.|....+... ..+ .+++|.+++....+. ... ...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~P~~~~~~~~--~~~-----~~~Vyd~~D~~~~~~~~~~~~~~~e~~ 149 (373)
T cd04950 77 PARRRRLLRLLLNALLFWAQLELGFGRPILWYYTPYTLPVAAL--LQA-----SLVVYDCVDDLSAFPGGPPELLEAERR 149 (373)
T ss_pred cchhhhHHHHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHhh--cCC-----CeEEEEcccchhccCCCCHHHHHHHHH
Confidence 000 00 00 1134556777777765554333 111 457887776532221 111 234
Q ss_pred cccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEec
Q 016053 199 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 278 (396)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~ 278 (396)
.++.++.+++.|....+.+. .++ .++.+||||+|.+.|.+...... . .+. + ...++++|+|+|+
T Consensus 150 ~~~~ad~vi~~S~~l~~~~~-----~~~---~~i~~i~ngvd~~~f~~~~~~~~----~--~~~-~-~~~~~~~i~y~G~ 213 (373)
T cd04950 150 LLKRADLVFTTSPSLYEAKR-----RLN---PNVVLVPNGVDYEHFAAARDPPP----P--PAD-L-AALPRPVIGYYGA 213 (373)
T ss_pred HHHhCCEEEECCHHHHHHHh-----hCC---CCEEEcccccCHHHhhcccccCC----C--hhH-H-hcCCCCEEEEEec
Confidence 45677778877777665443 233 67999999999998865421100 0 011 1 1246789999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHH
Q 016053 279 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA 356 (396)
Q Consensus 279 l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~ 356 (396)
+.+.++++.+.++++. .|+++|+++|++... ....+ +...+||+|+|.+ +++..+++.
T Consensus 214 l~~~~d~~ll~~la~~-----------~p~~~~vliG~~~~~-----~~~~~----~~~~~nV~~~G~~~~~~l~~~l~~ 273 (373)
T cd04950 214 IAEWLDLELLEALAKA-----------RPDWSFVLIGPVDVS-----IDPSA----LLRLPNVHYLGPKPYKELPAYLAG 273 (373)
T ss_pred cccccCHHHHHHHHHH-----------CCCCEEEEECCCcCc-----cChhH----hccCCCEEEeCCCCHHHHHHHHHh
Confidence 9998887655544432 289999999987211 11111 1113689999987 789999999
Q ss_pred cCEEEecCCC---CCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 357 IDVLVQNSQA---WGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 357 aDv~v~pS~~---~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+|++++|+.. ..+++|++++||||||+|||+|+.+.
T Consensus 274 ~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~ 312 (373)
T cd04950 274 FDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPE 312 (373)
T ss_pred CCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHH
Confidence 9999999862 13468999999999999999998764
No 82
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.77 E-value=5.7e-17 Score=154.15 Aligned_cols=275 Identities=16% Similarity=0.117 Sum_probs=166.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhC-CCEEEEEeccCCCCchhhhhhhhhhhhhcc--eEEEEcCc-----------
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRG--VQVISAKG----------- 141 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----------- 141 (396)
||++++..-+-- ..+.-+.++|++. |+++.++..+...... ....+.......+ +.......
T Consensus 1 ~i~~~~gtr~~~---~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 76 (363)
T cd03786 1 KILVVTGTRPEY---IKLAPLIRALKKDPGFELVLVVTGQHYDME-MGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGL 76 (363)
T ss_pred CEEEEEecCHHH---HHHHHHHHHHhcCCCCCEEEEEeCCCCChh-hhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHH
Confidence 467777432222 3677888889986 8999987754322111 1000111111111 11111110
Q ss_pred ---hhhhhhccCCcEEEEcCchhhHH--HHHHHhcCCCccccceeeeeeeccc----ccCchhhhccccccccceeeccc
Q 016053 142 ---QETINTALKADLIVLNTAVAGKW--LDAVLKEDVPRVLPNVLWWIHEMRG----HYFKLDYVKHLPLVAGAMIDSHV 212 (396)
Q Consensus 142 ---~~~~~~~~~~DiV~~~~~~~~~~--~~~~~~~~~~~~~~~vv~~~h~~~~----~~~~~~~~~~~~~~~~~~~~s~~ 212 (396)
........+||+||+|......+ ...+...++| ++...++... ...........+..+.+++.+..
T Consensus 77 ~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iP-----vv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~ 151 (363)
T cd03786 77 LIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIP-----VAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEE 151 (363)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCC-----EEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHH
Confidence 01223447999999997432222 2233444544 4543333222 11111111123455666666666
Q ss_pred cHHHHHHHHHhhhcccCCCEEEEecCC-ccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccC---CCCHHHH
Q 016053 213 TAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR---GKGQDLF 288 (396)
Q Consensus 213 ~~~~~~~~~~~~~g~~~~k~~vI~ngi-d~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~---~Kg~~~l 288 (396)
..+.+. +.|++++++.+++|++ |...+.... ......++.++++++.+++++.|+... .||++.+
T Consensus 152 ~~~~l~-----~~G~~~~kI~vign~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l 220 (363)
T cd03786 152 ARRNLL-----QEGEPPERIFVVGNTMIDALLRLLEL------AKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEI 220 (363)
T ss_pred HHHHHH-----HcCCCcccEEEECchHHHHHHHHHHh------hccchhhhhcccCCCCEEEEEeCCccccCChHHHHHH
Confidence 555544 4588889999999996 443322111 011223567888777788888998775 7999999
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCC-CCcEEEecCc--CCHHHHHHHcCEEEecCC
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI-QDRVHFVNKT--LTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l-~~~V~~~g~~--~~~~~~~~~aDv~v~pS~ 365 (396)
++|++++.+ .++.+++.|.+. ..+.+++.+.++++ .++|+|+|.. +++..+|++||++|.+|.
T Consensus 221 ~~al~~l~~---------~~~~vi~~~~~~-----~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg 286 (363)
T cd03786 221 LEALAELAE---------EDVPVVFPNHPR-----TRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG 286 (363)
T ss_pred HHHHHHHHh---------cCCEEEEECCCC-----hHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc
Confidence 999998753 246666666654 56788888888776 6789999864 789999999999999885
Q ss_pred CCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 366 AWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 366 ~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
| +..|||++|+|||+++..
T Consensus 287 ------g-i~~Ea~~~g~PvI~~~~~ 305 (363)
T cd03786 287 ------G-IQEEASFLGVPVLNLRDR 305 (363)
T ss_pred ------c-HHhhhhhcCCCEEeeCCC
Confidence 3 478999999999999754
No 83
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.75 E-value=1.6e-16 Score=152.97 Aligned_cols=156 Identities=17% Similarity=0.113 Sum_probs=121.6
Q ss_pred EEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEE
Q 016053 232 TYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHA 311 (396)
Q Consensus 232 ~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l 311 (396)
+.++|.|||.+.|...............+|++++ ++.+|+.++|+++.||+...++|++++.+..++. ..+++|
T Consensus 250 v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~---~gkv~L 323 (487)
T TIGR02398 250 LGAHPVGTDPERIRSALAAASIREMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPEL---LGKVTL 323 (487)
T ss_pred EEEEECEecHHHHHHHhcCchHHHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccc---cCceEE
Confidence 7899999999999755332222333567888887 6789999999999999999999999987744321 124799
Q ss_pred EEEecCCCcc----chHHHHHHHHHHhc-------CCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHH
Q 016053 312 VIIGSDMNAQ----TKFESELRNYVMQK-------KIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (396)
Q Consensus 312 ~ivG~g~~~~----~~~~~~l~~~~~~~-------~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEA 378 (396)
+++|.....+ .++..++++++.+. +..+-+.|.+.. +++..+|+.|||++.||. .||++++..|+
T Consensus 324 vqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDGmNLVa~Ey 401 (487)
T TIGR02398 324 VTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDGLNLVAKEY 401 (487)
T ss_pred EEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccccCcchhhH
Confidence 9998764222 23455666666554 555666777775 789999999999999999 99999999999
Q ss_pred HhcCC----CEEEcCCCCCCC
Q 016053 379 MAFQL----PVLVLSELHPSI 395 (396)
Q Consensus 379 ma~G~----PVI~t~~gG~~~ 395 (396)
+||+. |+|.|..+|++.
T Consensus 402 va~~~~~~GvLILSefaGaa~ 422 (487)
T TIGR02398 402 VAAQGLLDGVLVLSEFAGAAV 422 (487)
T ss_pred HhhhcCCCCCEEEeccccchh
Confidence 99999 999999999863
No 84
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.75 E-value=2.3e-17 Score=169.31 Aligned_cols=234 Identities=12% Similarity=0.065 Sum_probs=141.9
Q ss_pred cCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc-------CchhhhccccccccceeeccccHHHHHHHH
Q 016053 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (396)
..-|+|++|+.........+... .|. .++-++.|...+.. ......+.+..+|.+-..+....+.+.+..
T Consensus 132 ~~~d~vwvhDYhl~l~p~~lr~~-~~~--~~igfFlH~pfP~~~~f~~lp~~~~ll~~ll~~Dligf~t~~~~r~Fl~~~ 208 (726)
T PRK14501 132 RPGDVVWVHDYQLMLLPAMLRER-LPD--ARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVRHFLSSV 208 (726)
T ss_pred CCCCEEEEeCchhhhHHHHHHhh-CCC--CcEEEEeeCCCCChHHHhhCCChHHHHHHHhcCCeEEeCCHHHHHHHHHHH
Confidence 34499999996655544444443 333 45777788653211 011112222233333333333333333333
Q ss_pred Hhhhcc-----------cCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHH
Q 016053 222 RERLRI-----------KMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLH 290 (396)
Q Consensus 222 ~~~~g~-----------~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~ 290 (396)
.+..+. ...++.++|||||.+.|.+.............+|+.+ +++++|+++||+.+.||+..+++
T Consensus 209 ~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~ 285 (726)
T PRK14501 209 LRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLL 285 (726)
T ss_pred HHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHc---CCCEEEEEecCcccccCHHHHHH
Confidence 222221 1235899999999999976543222122234456654 46779999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCEEEEEEecCCCcc----chHHHHHHHHHHhcC-------CCCcEEEecCc--CCHHHHHHHc
Q 016053 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQKK-------IQDRVHFVNKT--LTVAPYLAAI 357 (396)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~----~~~~~~l~~~~~~~~-------l~~~V~~~g~~--~~~~~~~~~a 357 (396)
|++.+.+..++. ..+++|+++|.+...+ .+++.++.+++.+.+ ..+.+.|.|.. +++..+|+.|
T Consensus 286 A~~~ll~~~p~~---~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~a 362 (726)
T PRK14501 286 AFERFLEKNPEW---RGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAA 362 (726)
T ss_pred HHHHHHHhCccc---cCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhc
Confidence 999987633210 0147899997432111 123334444443322 11234455654 8999999999
Q ss_pred CEEEecCCCCCCCccHHHHHHHhc-----CCCEEEcCCCCC
Q 016053 358 DVLVQNSQAWGECFGRITIEAMAF-----QLPVLVLSELHP 393 (396)
Q Consensus 358 Dv~v~pS~~~~E~fg~~~lEAma~-----G~PVI~t~~gG~ 393 (396)
|++++||. .||||++++||||| |+||++...|++
T Consensus 363 Dv~v~~S~--~EG~~lv~~Eama~~~~~~g~~vls~~~G~~ 401 (726)
T PRK14501 363 DVALVTPL--RDGMNLVAKEYVASRTDGDGVLILSEMAGAA 401 (726)
T ss_pred cEEEeccc--ccccCcccceEEEEcCCCCceEEEecccchh
Confidence 99999999 99999999999999 557777776765
No 85
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.71 E-value=2.3e-15 Score=133.16 Aligned_cols=287 Identities=16% Similarity=0.132 Sum_probs=180.7
Q ss_pred cEEEEEeccCCC-CChHHHHHHHHHHHHhCC--CEEEEEeccCCCCchhhhhh----hhhhhhhcceEEEEcCch-----
Q 016053 75 KLVLLVSHELSL-SGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYS----LEHKMWDRGVQVISAKGQ----- 142 (396)
Q Consensus 75 ~kIl~v~~~~~~-gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----- 142 (396)
+.+.|..++.+- ||||+++..-.+.+++.- +...+.+.+-.-........ +.-.+...++.++.+...
T Consensus 44 ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVea 123 (465)
T KOG1387|consen 44 KTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVEA 123 (465)
T ss_pred eEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeeec
Confidence 578999988665 777899999999888853 33333333322111111111 111222233333322110
Q ss_pred ---h----------------hhhhccCCcEEEEcCc--hhhHHHHHHHhcCCCccccceeeeeeecc-c-c---------
Q 016053 143 ---E----------------TINTALKADLIVLNTA--VAGKWLDAVLKEDVPRVLPNVLWWIHEMR-G-H--------- 190 (396)
Q Consensus 143 ---~----------------~~~~~~~~DiV~~~~~--~~~~~~~~~~~~~~~~~~~~vv~~~h~~~-~-~--------- 190 (396)
. .-.-+.-||+.+-... +....+.. ..+ .|++...|-.. + .
T Consensus 124 ~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~--l~~-----~~V~aYvHYP~iS~DML~~l~qrq 196 (465)
T KOG1387|consen 124 STWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRR--LRR-----IPVVAYVHYPTISTDMLKKLFQRQ 196 (465)
T ss_pred ccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHH--Hcc-----CceEEEEecccccHHHHHHHHhhh
Confidence 0 0012377898887663 33333332 233 34666677431 0 0
Q ss_pred ------cCchhhhccc--------cccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHh
Q 016053 191 ------YFKLDYVKHL--------PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVL 256 (396)
Q Consensus 191 ------~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~ 256 (396)
+-+..|++++ ..++.++++|.-+...+.+ .++. .++.++|++++++....
T Consensus 197 ~s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~q----iW~~--~~~~iVyPPC~~e~lks---------- 260 (465)
T KOG1387|consen 197 KSGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQ----IWQS--NTCSIVYPPCSTEDLKS---------- 260 (465)
T ss_pred hcchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHH----Hhhc--cceeEEcCCCCHHHHHH----------
Confidence 0011122222 2455566666555444333 4443 56889999998874432
Q ss_pred HHHHHHHcCC-CCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ccchHHHHHHHHHHh
Q 016053 257 REHVRESLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN-AQTKFESELRNYVMQ 334 (396)
Q Consensus 257 ~~~~r~~~g~-~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~-~~~~~~~~l~~~~~~ 334 (396)
..+- ..+.+.++++|.+.|+|++. +++.++......+. .+..++++|+++|+.-. +|.+.-..+++.+++
T Consensus 261 ------~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl-~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~ 332 (465)
T KOG1387|consen 261 ------KFGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPL-EASVSPIKLIIVGSCRNEEDEERVKSLKDLAEE 332 (465)
T ss_pred ------HhcccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCch-hhccCCceEEEEeccCChhhHHHHHHHHHHHHh
Confidence 2222 35678999999999999999 55555543322211 01346799999998764 345566789999999
Q ss_pred cCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCC
Q 016053 335 KKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPS 394 (396)
Q Consensus 335 ~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~ 394 (396)
++++++|.|.-.. +++.++|+.|.+-|..-. .|.||+.+.|+||+|+-+|+.+.|||.
T Consensus 333 L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi~h~SgGP~ 392 (465)
T KOG1387|consen 333 LKIPKHVQFEKNVPYEKLVELLGKATIGVHTMW--NEHFGISVVEYMAAGLIPIVHNSGGPL 392 (465)
T ss_pred cCCccceEEEecCCHHHHHHHhccceeehhhhh--hhhcchhHHHHHhcCceEEEeCCCCCc
Confidence 9999999998765 899999999999999888 999999999999999999999999985
No 86
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.70 E-value=1.7e-15 Score=144.91 Aligned_cols=265 Identities=15% Similarity=0.139 Sum_probs=153.5
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEc--------------C
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--------------K 140 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 140 (396)
|||+++.. ..|| ..+...++++|++.++++.++...++.-.... ....+....+.+... .
T Consensus 2 ~ki~i~~G--gt~G-~i~~a~l~~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 75 (380)
T PRK00025 2 LRIAIVAG--EVSG-DLLGAGLIRALKARAPNLEFVGVGGPRMQAAG---CESLFDMEELAVMGLVEVLPRLPRLLKIRR 75 (380)
T ss_pred ceEEEEec--CcCH-HHHHHHHHHHHHhcCCCcEEEEEccHHHHhCC---CccccCHHHhhhccHHHHHHHHHHHHHHHH
Confidence 48888873 3334 44444599999998888888874332100000 000000111111110 0
Q ss_pred chhhhhhccCCcEEEEcCch--hhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHH
Q 016053 141 GQETINTALKADLIVLNTAV--AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218 (396)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~--~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 218 (396)
..+.+.+..+||+||++... .......+...++| ++++.+.....+......+..+..+.+++.+....+.+.
T Consensus 76 ~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip-----~i~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~ 150 (380)
T PRK00025 76 RLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIP-----TIHYVSPSVWAWRQGRAFKIAKATDHVLALFPFEAAFYD 150 (380)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCC-----EEEEeCCchhhcCchHHHHHHHHHhhheeCCccCHHHHH
Confidence 11233456899999998632 22222334445554 444333211011222223345567788888877666544
Q ss_pred HHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEE-EEec-ccCC-CCHHHHHHHHHHH
Q 016053 219 NRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA-IINS-VSRG-KGQDLFLHSFYES 295 (396)
Q Consensus 219 ~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il-~vG~-l~~~-Kg~~~li~a~~~l 295 (396)
..|.+ +.++.|++...... . .++.+.++++++++++++++ +.|+ .... ++++.++++++.+
T Consensus 151 -----~~g~~---~~~~G~p~~~~~~~-~-------~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l 214 (380)
T PRK00025 151 -----KLGVP---VTFVGHPLADAIPL-L-------PDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLL 214 (380)
T ss_pred -----hcCCC---eEEECcCHHHhccc-c-------cChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 23432 55555554322111 0 01356788899977776554 4453 3233 4478899999887
Q ss_pred HHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhc-CCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHH
Q 016053 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (396)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~ 374 (396)
.+ ++++++++++|.+. ..++++++.+++. ++. +.+.. +++..+|++||++|.+| |.+
T Consensus 215 ~~-------~~~~~~~ii~~~~~----~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~~~aDl~v~~s-------G~~ 272 (380)
T PRK00025 215 QQ-------RYPDLRFVLPLVNP----KRREQIEEALAEYAGLE--VTLLD--GQKREAMAAADAALAAS-------GTV 272 (380)
T ss_pred HH-------hCCCeEEEEecCCh----hhHHHHHHHHhhcCCCC--eEEEc--ccHHHHHHhCCEEEECc-------cHH
Confidence 65 23789999998632 3567788888776 554 55543 58999999999999977 578
Q ss_pred HHHHHhcCCCEEEc
Q 016053 375 TIEAMAFQLPVLVL 388 (396)
Q Consensus 375 ~lEAma~G~PVI~t 388 (396)
.+|||++|+|+|++
T Consensus 273 ~lEa~a~G~PvI~~ 286 (380)
T PRK00025 273 TLELALLKVPMVVG 286 (380)
T ss_pred HHHHHHhCCCEEEE
Confidence 88999999999987
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.68 E-value=9.2e-15 Score=139.10 Aligned_cols=273 Identities=15% Similarity=0.123 Sum_probs=156.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhC-CCEEEEEeccCCCCchhhhhhhhhhhhhcceE--E-EEcCc---------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--V-ISAKG--------- 141 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~--------- 141 (396)
|||++++..-+-- ..+..+.++|++. ++++.++...... .. ..+.+...++. + +....
T Consensus 1 ~~i~~~~gtr~~~---~~~~p~~~~l~~~~~~~~~~~~tg~h~---~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 71 (365)
T TIGR00236 1 LKVSIVLGTRPEA---IKMAPLIRALKKYPEIDSYVIVTAQHR---EM---LDQVLDLFHLPPDYDLNIMSPGQTLGEIT 71 (365)
T ss_pred CeEEEEEecCHHH---HHHHHHHHHHhhCCCCCEEEEEeCCCH---HH---HHHHHHhcCCCCCeeeecCCCCCCHHHHH
Confidence 3788887432222 4788888999885 6777766643322 11 12222222221 1 11111
Q ss_pred ------hhhhhhccCCcEEEEcCchh-hH-HHHHHHhcCCCccccceeeeeeeccc--cc--Cchhhhc-cc-cccccce
Q 016053 142 ------QETINTALKADLIVLNTAVA-GK-WLDAVLKEDVPRVLPNVLWWIHEMRG--HY--FKLDYVK-HL-PLVAGAM 207 (396)
Q Consensus 142 ------~~~~~~~~~~DiV~~~~~~~-~~-~~~~~~~~~~~~~~~~vv~~~h~~~~--~~--~~~~~~~-~~-~~~~~~~ 207 (396)
...+....+||+||+|+... .. ....+...++| ++..-+..++ .+ ++....+ .. +.++.++
T Consensus 72 ~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ip-----v~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~ 146 (365)
T TIGR00236 72 SNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIP-----VGHVEAGLRTGDRYSPMPEEINRQLTGHIADLHF 146 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCC-----EEEEeCCCCcCCCCCCCccHHHHHHHHHHHHhcc
Confidence 12334568999999997432 22 22334455655 3322222211 11 1112212 12 2346666
Q ss_pred eeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecc-cCCCCHH
Q 016053 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSV-SRGKGQD 286 (396)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l-~~~Kg~~ 286 (396)
+.+....+.+. +.|++++++.+++|++....+.... ...+..++++++. ++.++++..++. ...||++
T Consensus 147 ~~s~~~~~~l~-----~~G~~~~~I~vign~~~d~~~~~~~-----~~~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~ 215 (365)
T TIGR00236 147 APTEQAKDNLL-----RENVKADSIFVTGNTVIDALLTNVE-----IAYSSPVLSEFGE-DKRYILLTLHRRENVGEPLE 215 (365)
T ss_pred CCCHHHHHHHH-----HcCCCcccEEEeCChHHHHHHHHHh-----hccchhHHHhcCC-CCCEEEEecCchhhhhhHHH
Confidence 66666555543 3588888999999996333222111 0113456677763 334444444454 2468999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecC
Q 016053 287 LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNS 364 (396)
Q Consensus 287 ~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS 364 (396)
.+++|+.++.+ ++++++++++|.+. ....+. +.+.++..++|+|+|.. .++..+++.||+++.+|
T Consensus 216 ~ll~a~~~l~~-------~~~~~~~vi~~~~~---~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S 282 (365)
T TIGR00236 216 NIFKAIREIVE-------EFEDVQIVYPVHLN---PVVREP---LHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS 282 (365)
T ss_pred HHHHHHHHHHH-------HCCCCEEEEECCCC---hHHHHH---HHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC
Confidence 99999998764 23788988886442 112222 33334566789999976 56788999999998766
Q ss_pred CCCCCCccHHHHHHHhcCCCEEEc-CCCC
Q 016053 365 QAWGECFGRITIEAMAFQLPVLVL-SELH 392 (396)
Q Consensus 365 ~~~~E~fg~~~lEAma~G~PVI~t-~~gG 392 (396)
- ..++|||+||+|||++ +.||
T Consensus 283 g-------~~~~EA~a~g~PvI~~~~~~~ 304 (365)
T TIGR00236 283 G-------GVQEEAPSLGKPVLVLRDTTE 304 (365)
T ss_pred h-------hHHHHHHHcCCCEEECCCCCC
Confidence 3 5589999999999996 5555
No 88
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.63 E-value=4e-14 Score=135.04 Aligned_cols=269 Identities=16% Similarity=0.109 Sum_probs=160.1
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEc--------------C
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA--------------K 140 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 140 (396)
.||+++.. . .||..+-..++++|+++|+++.++...++.-... .....+....+.+... .
T Consensus 6 ~ki~i~aG--g-tsGhi~paal~~~l~~~~~~~~~~g~gg~~m~~~---g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~ 79 (385)
T TIGR00215 6 PTIALVAG--E-ASGDILGAGLRQQLKEHYPNARFIGVAGPRMAAE---GCEVLYSMEELSVMGLREVLGRLGRLLKIRK 79 (385)
T ss_pred CeEEEEeC--C-ccHHHHHHHHHHHHHhcCCCcEEEEEccHHHHhC---cCccccChHHhhhccHHHHHHHHHHHHHHHH
Confidence 36777662 2 2334554599999999999999988543210000 0000000001111100 0
Q ss_pred chhhhhhccCCcEEEEcCchhhH--HHHHHHhcCCCccccceeeeeeecccccCchhhh-ccccccccceeeccccHHHH
Q 016053 141 GQETINTALKADLIVLNTAVAGK--WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYV-KHLPLVAGAMIDSHVTAEYW 217 (396)
Q Consensus 141 ~~~~~~~~~~~DiV~~~~~~~~~--~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~ 217 (396)
..+.+.+..+||+|++.+..+.. ....+...++| +++++. ..-+.+..... ...+.++.+++.+....+++
T Consensus 80 ~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip-----~v~~i~-P~~waw~~~~~r~l~~~~d~v~~~~~~e~~~~ 153 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIK-----IIYYIS-PQVWAWRKWRAKKIEKATDFLLAILPFEKAFY 153 (385)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCC-----EEEEeC-CcHhhcCcchHHHHHHHHhHhhccCCCcHHHH
Confidence 11233456899999999854333 22245555654 443321 11122222223 33357788888888776664
Q ss_pred HHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEE-e-cccC-CCCHHHHHHHHHH
Q 016053 218 KNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAII-N-SVSR-GKGQDLFLHSFYE 294 (396)
Q Consensus 218 ~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~v-G-~l~~-~Kg~~~li~a~~~ 294 (396)
.+ .| .+..++.|++-.+..... .++.+.|+++|+++++++|+++ | |..+ .|++..++++++.
T Consensus 154 ~~-----~g---~~~~~vGnPv~~~~~~~~-------~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~ 218 (385)
T TIGR00215 154 QK-----KN---VPCRFVGHPLLDAIPLYK-------PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQL 218 (385)
T ss_pred Hh-----cC---CCEEEECCchhhhccccC-------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHH
Confidence 42 23 246678888733321100 0134568889998887777665 3 5555 6899999999988
Q ss_pred HHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHH
Q 016053 295 SLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (396)
Q Consensus 295 l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~ 374 (396)
+.+ +.|++++++++... ...+.+++..++++...+|.+.+. ++..+|++||++|.+|- .+
T Consensus 219 l~~-------~~p~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~SG-------t~ 278 (385)
T TIGR00215 219 LEQ-------QEPDLRRVLPVVNF----KRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLASG-------TA 278 (385)
T ss_pred HHH-------hCCCeEEEEEeCCc----hhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecCC-------HH
Confidence 765 33788887765332 244556666666665556766653 67889999999999884 67
Q ss_pred HHHHHhcCCCEEEcCC
Q 016053 375 TIEAMAFQLPVLVLSE 390 (396)
Q Consensus 375 ~lEAma~G~PVI~t~~ 390 (396)
.+|+|++|+|+|...-
T Consensus 279 tlEa~a~G~P~Vv~yk 294 (385)
T TIGR00215 279 ALEAALIKTPMVVGYR 294 (385)
T ss_pred HHHHHHcCCCEEEEEc
Confidence 7799999999988743
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.55 E-value=1.4e-13 Score=129.17 Aligned_cols=237 Identities=11% Similarity=0.069 Sum_probs=145.9
Q ss_pred CCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCC-cEEEEcCchhh
Q 016053 84 LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA-DLIVLNTAVAG 162 (396)
Q Consensus 84 ~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-DiV~~~~~~~~ 162 (396)
....|+.+.-.+..+.+.+.|+++.-+..-.... .. ..+... ....+....++ |+||.++|...
T Consensus 12 ~~~~a~~ka~~d~~~~~~~~g~~~~~~~~~~~~~-~~----~~~~~~----------~~~~~~~~~~~~Dvv~~~~P~~~ 76 (333)
T PRK09814 12 SGNSAALKAKNDVTKIAKQLGFEELGIYFYNIKR-DS----LSERSK----------RLDGILASLKPGDIVIFQFPTWN 76 (333)
T ss_pred cccchHHHHHHHHHHHHHHCCCeEeEEEeccccc-ch----HHHHHH----------HHHHHHhcCCCCCEEEEECCCCc
Confidence 3346778999999999999999987665221100 00 000000 00112333455 99999987542
Q ss_pred H-H-----HHHHHhcCCCccccceeeeeeecccccCc------hhhhccccccccceeeccccHHHHHHHHHhhhcccCC
Q 016053 163 K-W-----LDAVLKEDVPRVLPNVLWWIHEMRGHYFK------LDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 230 (396)
Q Consensus 163 ~-~-----~~~~~~~~~~~~~~~vv~~~h~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~ 230 (396)
. . +..+++. ..++++.+|+....... ......++.+|.+++.|..+.+++. ..|++..
T Consensus 77 ~~~~~~~~~~~~k~~-----~~k~i~~ihD~~~~~~~~~~~~~~~~~~~~~~aD~iI~~S~~~~~~l~-----~~g~~~~ 146 (333)
T PRK09814 77 GFEFDRLFVDKLKKK-----QVKIIILIHDIEPLRFDSNYYLMKEEIDMLNLADVLIVHSKKMKDRLV-----EEGLTTD 146 (333)
T ss_pred hHHHHHHHHHHHHHc-----CCEEEEEECCcHHHhccccchhhHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcC
Confidence 2 1 1122222 35689999987532221 1123456788899999988887765 3477667
Q ss_pred CEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEE
Q 016053 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (396)
Q Consensus 231 k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~ 310 (396)
++.++++..+...... +. ..+.++.|+|+|++...+++. . ..++++
T Consensus 147 ~i~~~~~~~~~~~~~~--------------~~---~~~~~~~i~yaG~l~k~~~l~-------~----------~~~~~~ 192 (333)
T PRK09814 147 KIIVQGIFDYLNDIEL--------------VK---TPSFQKKINFAGNLEKSPFLK-------N----------WSQGIK 192 (333)
T ss_pred ceEecccccccccccc--------------cc---cccCCceEEEecChhhchHHH-------h----------cCCCCe
Confidence 7777765543321110 00 113456899999998432111 0 016899
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCC---------CCCCccHHHHHHH
Q 016053 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQA---------WGECFGRITIEAM 379 (396)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~---------~~E~fg~~~lEAm 379 (396)
|+|+|+|+.. + ...++|+|+|++ +++..+|+. |+.+.+... ..-.+|.++.|+|
T Consensus 193 l~i~G~g~~~-----~---------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ym 257 (333)
T PRK09814 193 LTVFGPNPED-----L---------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYL 257 (333)
T ss_pred EEEECCCccc-----c---------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHH
Confidence 9999998621 1 234789999986 789999988 665543320 0135788999999
Q ss_pred hcCCCEEEcCCCCCC
Q 016053 380 AFQLPVLVLSELHPS 394 (396)
Q Consensus 380 a~G~PVI~t~~gG~~ 394 (396)
|||+|||+++.++.+
T Consensus 258 A~G~PVI~~~~~~~~ 272 (333)
T PRK09814 258 AAGLPVIVWSKAAIA 272 (333)
T ss_pred HCCCCEEECCCccHH
Confidence 999999999988754
No 90
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.52 E-value=1.9e-14 Score=116.65 Aligned_cols=101 Identities=26% Similarity=0.301 Sum_probs=76.1
Q ss_pred CEEEEEEecccCCCCHHHHHH-HHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcC
Q 016053 270 DLLFAIINSVSRGKGQDLFLH-SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (396)
Q Consensus 270 ~~~il~vG~l~~~Kg~~~li~-a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (396)
-+.|+++|++.+.|+++.+++ ++.++.+. .|+++|+|+|.++ . ++++. ..++|+++|+.+
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~-------~p~~~l~i~G~~~-----~--~l~~~-----~~~~v~~~g~~~ 62 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEK-------HPDIELIIIGNGP-----D--ELKRL-----RRPNVRFHGFVE 62 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHH-------STTEEEEEECESS--------HHCCH-----HHCTEEEE-S-H
T ss_pred cccccccccccccccccchhhhHHHHHHHH-------CcCEEEEEEeCCH-----H--HHHHh-----cCCCEEEcCCHH
Confidence 367899999999999999999 99988763 4899999999976 2 23333 225899999998
Q ss_pred CHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCC
Q 016053 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSE 390 (396)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~ 390 (396)
++.++++.||+++.|+.. .++++.+++|||++|+|||+++.
T Consensus 63 e~~~~l~~~dv~l~p~~~-~~~~~~k~~e~~~~G~pvi~~~~ 103 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRF-NEGFPNKLLEAMAAGKPVIASDN 103 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS--SCC-HHHHHHHCTT--EEEEHH
T ss_pred HHHHHHHhCCEEEEEeeC-CCcCcHHHHHHHHhCCCEEECCc
Confidence 999999999999999863 67999999999999999999987
No 91
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=2.4e-13 Score=126.91 Aligned_cols=136 Identities=26% Similarity=0.344 Sum_probs=112.0
Q ss_pred CEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCC--CEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 016053 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNE--DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (396)
Q Consensus 231 k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~--~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~ 308 (396)
+..+++++++.+.+... ...+..+ ...++++|++.+.||++.+++++..+... .++
T Consensus 173 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~-------~~~ 230 (381)
T COG0438 173 KIVVIPNGIDTEKFAPA---------------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKR-------GPD 230 (381)
T ss_pred CceEecCCcCHHHcCcc---------------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhhh-------cCC
Confidence 68999999998877531 1222233 37999999999999999999999998652 245
Q ss_pred EEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcC--CHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEE
Q 016053 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (396)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~--~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI 386 (396)
.+++++|.+... .+.+.+.+.+.+..+++.|+|... ++..+++.+|++++||. .|+||++++|||++|+|||
T Consensus 231 ~~~~~~g~~~~~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~~~~~Ea~a~g~pvi 304 (381)
T COG0438 231 IKLVIVGDGPER----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFGLVLLEAMAAGTPVI 304 (381)
T ss_pred eEEEEEcCCCcc----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccchHHHHHHHhcCCcEE
Confidence 899999998622 356666888888888999999874 78889999999999999 8999999999999999999
Q ss_pred EcCCCCCC
Q 016053 387 VLSELHPS 394 (396)
Q Consensus 387 ~t~~gG~~ 394 (396)
+++.+|..
T Consensus 305 ~~~~~~~~ 312 (381)
T COG0438 305 ASDVGGIP 312 (381)
T ss_pred ECCCCChH
Confidence 99998754
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.48 E-value=1.3e-12 Score=134.06 Aligned_cols=234 Identities=11% Similarity=0.063 Sum_probs=138.2
Q ss_pred CCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc--C-----chhhhccccccccceeeccccHHHHHHHHH
Q 016053 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--F-----KLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (396)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~--~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (396)
.=|+|++|+......-..+.+ ..|. .++-++.|...+.. | .....+-+..+|.+-..+......+.....
T Consensus 231 ~gD~VWVHDYHL~LlP~~LR~-~~p~--~~IGfFlHiPFPs~Eifr~LP~r~elL~glL~aDlIGFqT~~y~rhFl~~c~ 307 (934)
T PLN03064 231 EGDVVWCHDYHLMFLPKCLKE-YNSN--MKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACT 307 (934)
T ss_pred CCCEEEEecchhhHHHHHHHH-hCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEeCCHHHHHHHHHHHH
Confidence 348999999655444444444 3443 45777788652111 0 111222222334333333333333333332
Q ss_pred hhhccc-----------CCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHH
Q 016053 223 ERLRIK-----------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHS 291 (396)
Q Consensus 223 ~~~g~~-----------~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a 291 (396)
+..|.+ .-++.+.|.|||.+.|........-....++++++++ ++.+|+.++|+++.||+...++|
T Consensus 308 rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~A 384 (934)
T PLN03064 308 RILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFA---GRKVMLGVDRLDMIKGIPQKILA 384 (934)
T ss_pred HHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhC---CceEEEEeeccccccCHHHHHHH
Confidence 222321 1236678999999999765333222333467788775 56799999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHH----HHHHHHhcC----CC--CcEEEecC---cCCHHHHHHHcC
Q 016053 292 FYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESE----LRNYVMQKK----IQ--DRVHFVNK---TLTVAPYLAAID 358 (396)
Q Consensus 292 ~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~----l~~~~~~~~----l~--~~V~~~g~---~~~~~~~~~~aD 358 (396)
|+.+.+..++. ..++.|+-+....-.+.+.+++ +.+++.+.+ -. .-|+++.. .+++..+|+.||
T Consensus 385 fE~fL~~~Pe~---r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~AD 461 (934)
T PLN03064 385 FEKFLEENPEW---RDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTD 461 (934)
T ss_pred HHHHHHhCccc---cCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCC
Confidence 99987644321 0123344333221111123333 444333322 11 12455443 278999999999
Q ss_pred EEEecCCCCCCCccHHHHHHHhcCC----CEEEcCCCCCC
Q 016053 359 VLVQNSQAWGECFGRITIEAMAFQL----PVLVLSELHPS 394 (396)
Q Consensus 359 v~v~pS~~~~E~fg~~~lEAma~G~----PVI~t~~gG~~ 394 (396)
|++.||. .|||+++..|+|+|+. ++|.|...|++
T Consensus 462 V~lvTsl--rDGmNLva~Eyva~~~~~~GvLILSEfaGaa 499 (934)
T PLN03064 462 VALVTSL--RDGMNLVSYEFVACQDSKKGVLILSEFAGAA 499 (934)
T ss_pred EEEeCcc--ccccCchHHHHHHhhcCCCCCeEEeCCCchH
Confidence 9999999 9999999999999944 44448888875
No 93
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.40 E-value=1.6e-13 Score=116.00 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=81.3
Q ss_pred EEEEecc-CCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhh-hhhhhhhh-hhcceEE---EEcCchhhhhhccC
Q 016053 77 VLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEV-IYSLEHKM-WDRGVQV---ISAKGQETINTALK 150 (396)
Q Consensus 77 Il~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~-~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~ 150 (396)
|+++... ...||+++++.+++++|+++||+|++++.......... ........ ....... ..........+..+
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEELVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEK 80 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTEEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhccceeeeeecccccccchhHHHHHHHHHHHHHcC
Confidence 4455544 45599999999999999999999999995544321111 00000000 0000000 00011223445579
Q ss_pred CcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccc-------ccCchh------hhccccccccceeeccccHHHH
Q 016053 151 ADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG-------HYFKLD------YVKHLPLVAGAMIDSHVTAEYW 217 (396)
Q Consensus 151 ~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~-------~~~~~~------~~~~~~~~~~~~~~s~~~~~~~ 217 (396)
+|+||+|......+...... . .+.+++.|+... ...... .....+..+.++++|..+++.+
T Consensus 81 ~DiVh~~~~~~~~~~~~~~~-~-----~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l 154 (177)
T PF13439_consen 81 PDIVHIHGPPAFWIALLACR-K-----VPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDEL 154 (177)
T ss_dssp -SEEECCTTHCCCHHHHHHH-C-----SCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHH
T ss_pred CCeEEecccchhHHHHHhcc-C-----CCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHH
Confidence 99999999655443333333 3 458888998641 000000 1122356788888888877765
Q ss_pred HHHHHhhhcccCCCEEEEecCCccchh
Q 016053 218 KNRTRERLRIKMPDTYVVHLGNSKELM 244 (396)
Q Consensus 218 ~~~~~~~~g~~~~k~~vI~ngid~~~~ 244 (396)
.+ +|++++++.|||||+|.+.|
T Consensus 155 ~~-----~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 155 IK-----FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp HH-----HT--SS-EEE----B-CCCH
T ss_pred HH-----hCCcccCCEEEECCccHHHc
Confidence 53 67888999999999999987
No 94
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.40 E-value=1.7e-10 Score=108.80 Aligned_cols=253 Identities=15% Similarity=0.112 Sum_probs=143.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEc-----Cc--------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISA-----KG-------- 141 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------- 141 (396)
+||++.+ ...||.-.-...+++.|+++||+|.+++.....+.. .+...|+.+..+ ..
T Consensus 2 ~~i~~~~--GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~--------l~~~~g~~~~~~~~~~l~~~~~~~~~~ 71 (352)
T PRK12446 2 KKIVFTG--GGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKT--------IIEKENIPYYSISSGKLRRYFDLKNIK 71 (352)
T ss_pred CeEEEEc--CCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccc--------cCcccCCcEEEEeccCcCCCchHHHHH
Confidence 4677776 344666688889999999999999999855542211 111223322111 11
Q ss_pred -----------hhhhhhccCCcEEEEcCchhh-HHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceee
Q 016053 142 -----------QETINTALKADLIVLNTAVAG-KWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (396)
Q Consensus 142 -----------~~~~~~~~~~DiV~~~~~~~~-~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (396)
...+.+..+||+||.+..... .....+...++|. .+|+... ....-.+.+......++.
T Consensus 72 ~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~-------~i~e~n~--~~g~~nr~~~~~a~~v~~ 142 (352)
T PRK12446 72 DPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPV-------LLHESDM--TPGLANKIALRFASKIFV 142 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCE-------EEECCCC--CccHHHHHHHHhhCEEEE
Confidence 012345689999999885432 3334445555542 3566532 222222333333333333
Q ss_pred ccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHH
Q 016053 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (396)
Q Consensus 210 s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li 289 (396)
+.... ..+++.+++.+..|++..+..... ++..++.+++++++++|+.+|.= .|-..+-
T Consensus 143 ~f~~~---------~~~~~~~k~~~tG~Pvr~~~~~~~---------~~~~~~~~~l~~~~~~iLv~GGS---~Ga~~in 201 (352)
T PRK12446 143 TFEEA---------AKHLPKEKVIYTGSPVREEVLKGN---------REKGLAFLGFSRKKPVITIMGGS---LGAKKIN 201 (352)
T ss_pred Eccch---------hhhCCCCCeEEECCcCCccccccc---------chHHHHhcCCCCCCcEEEEECCc---cchHHHH
Confidence 32111 112445678888888876553211 34456778888777777777652 2333344
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEE-EecCCCccchHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHHcCEEEecCCCC
Q 016053 290 HSFYESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAW 367 (396)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~v~pS~~~ 367 (396)
+++..+.+.+. .++++++ .|... +.+...+ . +++...++. +++.++|++||++|.-
T Consensus 202 ~~~~~~l~~l~------~~~~vv~~~G~~~-----~~~~~~~----~---~~~~~~~f~~~~m~~~~~~adlvIsr---- 259 (352)
T PRK12446 202 ETVREALPELL------LKYQIVHLCGKGN-----LDDSLQN----K---EGYRQFEYVHGELPDILAITDFVISR---- 259 (352)
T ss_pred HHHHHHHHhhc------cCcEEEEEeCCch-----HHHHHhh----c---CCcEEecchhhhHHHHHHhCCEEEEC----
Confidence 44443332221 2466555 45431 2222221 1 234556877 7899999999999943
Q ss_pred CCCccHHHHHHHhcCCCEEEcCCC
Q 016053 368 GECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 368 ~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+-+.++.|++++|+|.|.....
T Consensus 260 --~G~~t~~E~~~~g~P~I~iP~~ 281 (352)
T PRK12446 260 --AGSNAIFEFLTLQKPMLLIPLS 281 (352)
T ss_pred --CChhHHHHHHHcCCCEEEEcCC
Confidence 4478999999999999988553
No 95
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.32 E-value=1.3e-09 Score=99.35 Aligned_cols=253 Identities=15% Similarity=0.157 Sum_probs=147.7
Q ss_pred EEEEEeccCCC--CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc----------hh
Q 016053 76 LVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----------QE 143 (396)
Q Consensus 76 kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 143 (396)
||+|....... .|.-.+...||++|+++|++|.+++...+. .+.+.+...|++++.... ..
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~-------~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~ 73 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPG-------DLIDLLLSAGFPVYELPDESSRYDDALELI 73 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH-------HHHHHHHHcCCeEEEecCCCchhhhHHHHH
Confidence 46666654333 444599999999999999999999965432 134456667777765533 22
Q ss_pred hhhhccCCcEEEEcCc-hhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHHHHH
Q 016053 144 TINTALKADLIVLNTA-VAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTR 222 (396)
Q Consensus 144 ~~~~~~~~DiV~~~~~-~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 222 (396)
.+.+..+||+|++... ....|...++..+ ++++ .+.+.....+ .+|.++..... .+...
T Consensus 74 ~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~-----~~l~-~iDD~~~~~~---------~~D~vin~~~~-~~~~~---- 133 (279)
T TIGR03590 74 NLLEEEKFDILIVDHYGLDADWEKLIKEFG-----RKIL-VIDDLADRPH---------DCDLLLDQNLG-ADASD---- 133 (279)
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHHHHHHhC-----CeEE-EEecCCCCCc---------CCCEEEeCCCC-cCHhH----
Confidence 3344568999988874 3344544444332 2222 2333311111 23333333222 11111
Q ss_pred hhhc-ccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHh
Q 016053 223 ERLR-IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (396)
Q Consensus 223 ~~~g-~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~ 301 (396)
..+ .+... ....|++.-...+..... ......+ ++.+.+++++|...+.+....+++++.++.
T Consensus 134 -y~~~~~~~~--~~l~G~~Y~~lr~eF~~~----~~~~~~~----~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~----- 197 (279)
T TIGR03590 134 -YQGLVPANC--RLLLGPSYALLREEFYQL----ATANKRR----KPLRRVLVSFGGADPDNLTLKLLSALAESQ----- 197 (279)
T ss_pred -hcccCcCCC--eEEecchHHhhhHHHHHh----hHhhhcc----cccCeEEEEeCCcCCcCHHHHHHHHHhccc-----
Confidence 112 22232 334465433332211000 0000111 123457788888777776778888887642
Q ss_pred hccCCCCEE-EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHh
Q 016053 302 KKLEVPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (396)
Q Consensus 302 ~~~~~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma 380 (396)
.+++ .+|+|.+. +..+++++.++.. +++++.++++++.++|++||++|.+ .|.++.|+++
T Consensus 198 -----~~~~i~vv~G~~~----~~~~~l~~~~~~~---~~i~~~~~~~~m~~lm~~aDl~Is~-------~G~T~~E~~a 258 (279)
T TIGR03590 198 -----INISITLVTGSSN----PNLDELKKFAKEY---PNIILFIDVENMAELMNEADLAIGA-------AGSTSWERCC 258 (279)
T ss_pred -----cCceEEEEECCCC----cCHHHHHHHHHhC---CCEEEEeCHHHHHHHHHHCCEEEEC-------CchHHHHHHH
Confidence 2333 33777764 2456777777653 4799999999999999999999963 3589999999
Q ss_pred cCCCEEEcCC
Q 016053 381 FQLPVLVLSE 390 (396)
Q Consensus 381 ~G~PVI~t~~ 390 (396)
+|+|+|+...
T Consensus 259 ~g~P~i~i~~ 268 (279)
T TIGR03590 259 LGLPSLAICL 268 (279)
T ss_pred cCCCEEEEEe
Confidence 9999998654
No 96
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8e-09 Score=92.23 Aligned_cols=283 Identities=15% Similarity=0.127 Sum_probs=171.9
Q ss_pred ChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhh-----------------------
Q 016053 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQET----------------------- 144 (396)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 144 (396)
|-.-++..-|..|++.|++|+++.-.++. +.++.+....++++.......
T Consensus 24 GRSPRMqYHA~Sla~~gf~VdliGy~~s~-------p~e~l~~hprI~ih~m~~l~~~~~~p~~~~l~lKvf~Qfl~Ll~ 96 (444)
T KOG2941|consen 24 GRSPRMQYHALSLAKLGFQVDLIGYVESI-------PLEELLNHPRIRIHGMPNLPFLQGGPRVLFLPLKVFWQFLSLLW 96 (444)
T ss_pred CCChHHHHHHHHHHHcCCeEEEEEecCCC-------ChHHHhcCCceEEEeCCCCcccCCCchhhhhHHHHHHHHHHHHH
Confidence 33456777788999999999999833321 144445555677766543321
Q ss_pred -hhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccc-c--Cchh-------hhccc-----ccccccee
Q 016053 145 -INTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGH-Y--FKLD-------YVKHL-----PLVAGAMI 208 (396)
Q Consensus 145 -~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~-~--~~~~-------~~~~~-----~~~~~~~~ 208 (396)
+.-...+|++...+|.+...+..+.-... ..+++.+..-|++... . ++.. ..+++ +.++...|
T Consensus 97 aL~~~~~~~~ilvQNPP~iPtliv~~~~~~-l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLc 175 (444)
T KOG2941|consen 97 ALFVLRPPDIILVQNPPSIPTLIVCVLYSI-LTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKLADYNLC 175 (444)
T ss_pred HHHhccCCcEEEEeCCCCCchHHHHHHHHH-HhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcccccchh
Confidence 11238899999998654433222221100 1125567677776211 0 0000 11111 24445555
Q ss_pred eccccHHHHHHHHHhhhcccCCCEEEEecCC-----ccch----hhhhhh---------hHHHHHhHHHHHHHcC-----
Q 016053 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-----SKEL----MEVAED---------NVAKRVLREHVRESLG----- 265 (396)
Q Consensus 209 ~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngi-----d~~~----~~~~~~---------~~~~~~~~~~~r~~~g----- 265 (396)
++.++++ .+.+.+|+. +..|+|.-. +.+. |.+... +.++..++..+-++..
T Consensus 176 VT~AMr~----dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~ 249 (444)
T KOG2941|consen 176 VTKAMRE----DLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQ 249 (444)
T ss_pred hHHHHHH----HHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhh
Confidence 5555544 444477764 355555221 1111 322211 1111222222333332
Q ss_pred -CCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEe
Q 016053 266 -VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV 344 (396)
Q Consensus 266 -~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~ 344 (396)
.++...+++..-+..+..++..+++|+...-+.....+...|++-++|-|.|+ ..+...+.++++.++ +|.+.
T Consensus 250 ~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP-----lkE~Y~~~I~~~~~~-~v~~~ 323 (444)
T KOG2941|consen 250 LLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP-----LKEKYSQEIHEKNLQ-HVQVC 323 (444)
T ss_pred hccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc-----hhHHHHHHHHHhccc-ceeee
Confidence 23445667777788899999999999986655555545567999999999998 889999999999887 56665
Q ss_pred c-C--cCCHHHHHHHcCEE--EecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 345 N-K--TLTVAPYLAAIDVL--VQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 345 g-~--~~~~~~~~~~aDv~--v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
- + .+|.+.+++.||+. +.+|.. +=..|++++....||+||+|-+..
T Consensus 324 tpWL~aEDYP~ll~saDlGVcLHtSSS-GLDLPMKVVDMFGcglPvcA~~fk 374 (444)
T KOG2941|consen 324 TPWLEAEDYPKLLASADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVNFK 374 (444)
T ss_pred ecccccccchhHhhccccceEeeecCc-ccCcchhHHHhhcCCCceeeecch
Confidence 4 3 48999999999975 455553 567899999999999999997753
No 97
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=6.9e-09 Score=97.02 Aligned_cols=256 Identities=18% Similarity=0.138 Sum_probs=151.1
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCE-EEEEeccCCCCchhhhhhhhhhhhhcceEE--EEcCch----------
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTK-VNWITIQKPSEEDEVIYSLEHKMWDRGVQV--ISAKGQ---------- 142 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~-V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------- 142 (396)
+|++.. ...||.-.-...++++|.++|++ |.++......+.. .....++.+ ++....
T Consensus 2 ~ivl~~--gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~--------l~~~~~~~~~~I~~~~~~~~~~~~~~~ 71 (357)
T COG0707 2 KIVLTA--GGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAF--------LVKQYGIEFELIPSGGLRRKGSLKLLK 71 (357)
T ss_pred eEEEEe--CCCccchhHHHHHHHHHHhhCccEEEEecccccceee--------eccccCceEEEEecccccccCcHHHHH
Confidence 344444 34466678999999999999995 6666432221111 011112222 222111
Q ss_pred ------------hhhhhccCCcEEEEcCc-hhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceee
Q 016053 143 ------------ETINTALKADLIVLNTA-VAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMID 209 (396)
Q Consensus 143 ------------~~~~~~~~~DiV~~~~~-~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 209 (396)
+.+.+..+||+|+.... .+......+...++| + .+|+. ......-.++.......+..
T Consensus 72 ~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iP-----v--~ihEq--n~~~G~ank~~~~~a~~V~~ 142 (357)
T COG0707 72 APFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIP-----V--IIHEQ--NAVPGLANKILSKFAKKVAS 142 (357)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCC-----E--EEEec--CCCcchhHHHhHHhhceeee
Confidence 23445699999999764 334444455566655 3 36765 33444433444333334433
Q ss_pred ccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHH
Q 016053 210 SHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (396)
Q Consensus 210 s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li 289 (396)
+.... .-+.+.+++.+..|++..+.+. .+. ...+.... .++++|+++|. ..|...+-
T Consensus 143 ~f~~~---------~~~~~~~~~~~tG~Pvr~~~~~-~~~--------~~~~~~~~--~~~~~ilV~GG---S~Ga~~ln 199 (357)
T COG0707 143 AFPKL---------EAGVKPENVVVTGIPVRPEFEE-LPA--------AEVRKDGR--LDKKTILVTGG---SQGAKALN 199 (357)
T ss_pred ccccc---------cccCCCCceEEecCcccHHhhc-cch--------hhhhhhcc--CCCcEEEEECC---cchhHHHH
Confidence 33321 1234566789999998877764 211 11222222 26677777765 34555566
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCC
Q 016053 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGE 369 (396)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E 369 (396)
+++.++...+.+ +++++...+.. ..+++++...+++. +...++.+||.++|++||++|.=
T Consensus 200 ~~v~~~~~~l~~------~~~v~~~~G~~-----~~~~~~~~~~~~~~---~~v~~f~~dm~~~~~~ADLvIsR------ 259 (357)
T COG0707 200 DLVPEALAKLAN------RIQVIHQTGKN-----DLEELKSAYNELGV---VRVLPFIDDMAALLAAADLVISR------ 259 (357)
T ss_pred HHHHHHHHHhhh------CeEEEEEcCcc-----hHHHHHHHHhhcCc---EEEeeHHhhHHHHHHhccEEEeC------
Confidence 666655544421 46665555432 35566666666554 88899999999999999999943
Q ss_pred CccHHHHHHHhcCCCEEEcCCCCC
Q 016053 370 CFGRITIEAMAFQLPVLVLSELHP 393 (396)
Q Consensus 370 ~fg~~~lEAma~G~PVI~t~~gG~ 393 (396)
+-++++.|..++|+|+|--..+..
T Consensus 260 aGa~Ti~E~~a~g~P~IliP~p~~ 283 (357)
T COG0707 260 AGALTIAELLALGVPAILVPYPPG 283 (357)
T ss_pred CcccHHHHHHHhCCCEEEeCCCCC
Confidence 347999999999999998776654
No 98
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.22 E-value=5.2e-10 Score=109.91 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=113.4
Q ss_pred cccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEe-
Q 016053 199 HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIIN- 277 (396)
Q Consensus 199 ~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG- 277 (396)
.+...+.+++.+....+.+.+++.+. . ...++..||.+.- ....... ......+++++
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~~-~-~~~~v~~Ip~~~~-~~~~~~s------------------~r~~~~~I~v~i 327 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYREN-Y-VEFDISRITPFDT-RLRLGQS------------------QQLYETEIGFWI 327 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhhc-c-cCCcceeeCccce-EEecChh------------------hcccceEEEEEc
Confidence 44566777776666555555544321 0 1234667775533 2111000 12334677788
Q ss_pred -cccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCC------------------
Q 016053 278 -SVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ------------------ 338 (396)
Q Consensus 278 -~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~------------------ 338 (396)
|+ +.|.++.+|+|+.++.+ ++|+++|.+.|.+.+ .+..+.+++.+++++++
T Consensus 328 drL-~ek~~~~~I~av~~~~~-------~~p~~~L~~~gy~~~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 328 DGL-SDEELQQILQQLLQYIL-------KNPDYELKILTYNND--NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred CCC-ChHHHHHHHHHHHHHHh-------hCCCeEEEEEEecCc--hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 99 99999999999999876 459999999998742 23567777887877766
Q ss_pred -----------CcEEEecCcC--CHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEE
Q 016053 339 -----------DRVHFVNKTL--TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (396)
Q Consensus 339 -----------~~V~~~g~~~--~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI 386 (396)
++|.|.|... ++.+.|..+.++|.+|. .|+|+ +.+||++.|+|+|
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI 455 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI 455 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee
Confidence 7999999886 99999999999999999 99999 9999999999999
No 99
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.20 E-value=1.4e-09 Score=108.28 Aligned_cols=123 Identities=13% Similarity=0.184 Sum_probs=96.7
Q ss_pred CCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCcc---chHHHHHHHHHHhcCCCCcEE
Q 016053 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---TKFESELRNYVMQKKIQDRVH 342 (396)
Q Consensus 266 ~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~---~~~~~~l~~~~~~~~l~~~V~ 342 (396)
++++.+++++++|+..+||++.++.++.++.+.+.. ...++++++.|.+.+.+ .++.+.+.+++++...+++|.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~---~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~ 461 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNN---PERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIV 461 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhC---CCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEE
Confidence 457788999999999999999999999988753321 01379999999997543 225666777777655667898
Q ss_pred EecC-c-CCHHHHHHHcCEEEe-cCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 343 FVNK-T-LTVAPYLAAIDVLVQ-NSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 343 ~~g~-~-~~~~~~~~~aDv~v~-pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
|+-. - .-...+++.||++++ ||+. .|.+|++-+-||..|.+.+++--|.
T Consensus 462 f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL~~sv~DG~ 513 (601)
T TIGR02094 462 FLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVLNLSILDGW 513 (601)
T ss_pred EEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCceeecccCc
Confidence 8754 3 335667899999999 9986 8999999999999999999987644
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.07 E-value=7.6e-09 Score=99.97 Aligned_cols=231 Identities=19% Similarity=0.221 Sum_probs=119.1
Q ss_pred CCcEE-EEcCchhhHHHHHHHhcCCCccccceeeeeeecc-ccc--------Cch------h--------hhcc------
Q 016053 150 KADLI-VLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMR-GHY--------FKL------D--------YVKH------ 199 (396)
Q Consensus 150 ~~DiV-~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~-~~~--------~~~------~--------~~~~------ 199 (396)
+..+| |+|...++..+..+++...+ ...+++.|--. +.+ +.. . +.++
T Consensus 142 ~~~ViaHfHEWmaG~gll~lr~~~~~---VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraa 218 (633)
T PF05693_consen 142 KPKVIAHFHEWMAGVGLLYLRKRKPD---VATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAA 218 (633)
T ss_dssp SEEEEEEEESGGGTTHHHHHHHTT-S---CEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHH
T ss_pred CCcEEEEechHhHhHHHHHHhccCCC---eeEEEEecccchhhHhhcCCCcHHHHhhccCccccccCccchHHHHHHHHH
Confidence 34444 88888877776766665543 45788888521 111 100 0 0011
Q ss_pred ccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHH-HHHhHHH----HHHHc----CCC-CC
Q 016053 200 LPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVA-KRVLREH----VRESL----GVR-NE 269 (396)
Q Consensus 200 ~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~-~~~~~~~----~r~~~----g~~-~~ 269 (396)
...++-..++|..++..... .++ ...-.|+|||++.+.|.......+ ....|++ ++..+ .++ ++
T Consensus 219 A~~AdvFTTVSeITa~Ea~~----LL~--r~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d~ 292 (633)
T PF05693_consen 219 AHYADVFTTVSEITAKEAEH----LLK--RKPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLDK 292 (633)
T ss_dssp HHHSSEEEESSHHHHHHHHH----HHS--S--SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GGG
T ss_pred HHhcCeeeehhhhHHHHHHH----HhC--CCCCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCccc
Confidence 12444455556666544332 222 222478999999988765432221 1122222 33332 233 34
Q ss_pred CEEEEEEecccC-CCCHHHHHHHHHHHHHHHHhhccCCCCE-EEEEEecCCC----------------------------
Q 016053 270 DLLFAIINSVSR-GKGQDLFLHSFYESLELIKEKKLEVPSV-HAVIIGSDMN---------------------------- 319 (396)
Q Consensus 270 ~~~il~vG~l~~-~Kg~~~li~a~~~l~~~~~~~~~~~~~~-~l~ivG~g~~---------------------------- 319 (396)
.+.|...||..- .||+|.+|+|+..|...++..+.+ ..+ -|+|+-....
T Consensus 293 tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~-~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g 371 (633)
T PF05693_consen 293 TLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSD-KTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIG 371 (633)
T ss_dssp EEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S--EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCC-CeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 566777799874 899999999999997766653211 122 2334332210
Q ss_pred ----------------------------------------------ccchHHHHHHHHHHhcCCCC------cEEEecCc
Q 016053 320 ----------------------------------------------AQTKFESELRNYVMQKKIQD------RVHFVNKT 347 (396)
Q Consensus 320 ----------------------------------------------~~~~~~~~l~~~~~~~~l~~------~V~~~g~~ 347 (396)
-.++..+.+.+.++++++.+ +|+|++.-
T Consensus 372 ~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~y 451 (633)
T PF05693_consen 372 KRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEY 451 (633)
T ss_dssp HHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S-
T ss_pred HHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeecc
Confidence 00011222333444444331 56776631
Q ss_pred ---------CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 348 ---------LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 348 ---------~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
-+..+++..||+.|+||+ +|+||.+.+|+.++|+|.|+||..|
T Consensus 452 L~~~dgif~l~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsITTnLsG 503 (633)
T PF05693_consen 452 LSGTDGIFNLDYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSITTNLSG 503 (633)
T ss_dssp --TTSSSS-S-HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EEEETTBH
T ss_pred ccCCCCCCCCCHHHHhccCceeeeccc--cccccCChHHHhhcCCceeeccchh
Confidence 468899999999999999 9999999999999999999999876
No 101
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.05 E-value=2.8e-10 Score=94.37 Aligned_cols=134 Identities=17% Similarity=0.139 Sum_probs=72.1
Q ss_pred CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch---------------hhhh--hcc
Q 016053 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---------------ETIN--TAL 149 (396)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~--~~~ 149 (396)
||+++++.+++++|.++||+|++++...... .......++.+..+... ..+. ...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 72 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPE--------DDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRE 72 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GG--------G-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT-
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCc--------ccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhcc
Confidence 7899999999999999999999999654421 11122345555332211 1223 458
Q ss_pred CCcEEEEcCchhhHHHHHHH-hcCCCccccceeeeeeeccccc---Cchh-----hhccccccccceeeccccHHHHHHH
Q 016053 150 KADLIVLNTAVAGKWLDAVL-KEDVPRVLPNVLWWIHEMRGHY---FKLD-----YVKHLPLVAGAMIDSHVTAEYWKNR 220 (396)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~-~~~~~~~~~~vv~~~h~~~~~~---~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (396)
+||+||+|.+........+. ..+ .|++.++|+..... +... ....+..++.+++.|....+.+.+
T Consensus 73 ~~Dvv~~~~~~~~~~~~~~~~~~~-----~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~- 146 (160)
T PF13579_consen 73 RPDVVHAHSPTAGLVAALARRRRG-----IPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLRR- 146 (160)
T ss_dssp --SEEEEEHHHHHHHHHHHHHHHT-------EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHHH-
T ss_pred CCeEEEecccchhHHHHHHHHccC-----CcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHHH-
Confidence 99999999965444444343 334 45888888753111 1111 123456788888888887776553
Q ss_pred HHhhhcccCCCEEEEecC
Q 016053 221 TRERLRIKMPDTYVVHLG 238 (396)
Q Consensus 221 ~~~~~g~~~~k~~vI~ng 238 (396)
+|++++|+.|||||
T Consensus 147 ----~g~~~~ri~vipnG 160 (160)
T PF13579_consen 147 ----YGVPPDRIHVIPNG 160 (160)
T ss_dssp ----H---GGGEEE----
T ss_pred ----hCCCCCcEEEeCcC
Confidence 57888999999998
No 102
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.98 E-value=5.4e-08 Score=98.99 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=97.4
Q ss_pred CCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccch---HHHHHHHHHHhcCCCCcEE
Q 016053 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 342 (396)
Q Consensus 266 ~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~---~~~~l~~~~~~~~l~~~V~ 342 (396)
++++.++|+++.|+..+|+.+.++..+..+.+.+.+ ...+++|++.|.+.+.+.. +.+.+.+++++....++|.
T Consensus 474 ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~---~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVv 550 (778)
T cd04299 474 LDPNVLTIGFARRFATYKRATLLLRDPERLKRLLND---PERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIV 550 (778)
T ss_pred cCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhC---CCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEE
Confidence 457778999999999999999999999888764432 1136999999999866532 3445666666556677899
Q ss_pred EecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 343 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 343 ~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
|+..- .-...+++.||+.++||+.-.|.+|.+-+-||.-|.+-+++--|-
T Consensus 551 fle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGw 602 (778)
T cd04299 551 FLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGW 602 (778)
T ss_pred EEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCc
Confidence 98653 335567899999999999657999999999999999999887654
No 103
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.97 E-value=6.9e-08 Score=92.69 Aligned_cols=235 Identities=9% Similarity=0.006 Sum_probs=146.3
Q ss_pred cCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc-------CchhhhccccccccceeeccccHHHHHHHH
Q 016053 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (396)
..-|+|++|+......-..+.+.+ |. .++-++.|...+.. ......+.+..+|.+-..+......+.+..
T Consensus 122 ~~~D~VWVHDYhL~llp~~LR~~~-~~--~~IgFFlHiPFPs~eifr~LP~r~eil~glL~aDlIGFqt~~y~rnFl~~~ 198 (474)
T PRK10117 122 KDDDIIWIHDYHLLPFASELRKRG-VN--NRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLAFLDCL 198 (474)
T ss_pred CCCCEEEEeccHhhHHHHHHHHhC-CC--CcEEEEEeCCCCChHHHhhCCChHHHHHHHHhCccceeCCHHHHHHHHHHH
Confidence 344899999976555444444443 32 45777888652111 111122222233333333333333333332
Q ss_pred Hhhhccc------------CCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHH
Q 016053 222 RERLRIK------------MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (396)
Q Consensus 222 ~~~~g~~------------~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li 289 (396)
.+..|.. .-++.+.|-|||.+.|........ .....+++++++ ++.+|+-+.|++..||+..=+
T Consensus 199 ~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~-~~~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl 274 (474)
T PRK10117 199 SNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPL-PPKLAQLKAELK---NVQNIFSVERLDYSKGLPERF 274 (474)
T ss_pred HHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchH-HHHHHHHHHHcC---CCeEEEEecccccccCHHHHH
Confidence 2222221 123677899999998865433221 223466777775 467888899999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEecCCCcc----chHHHHHHHHHHhc----CCCC--cEEEecC---cCCHHHHHHH
Q 016053 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQK----KIQD--RVHFVNK---TLTVAPYLAA 356 (396)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~----~~~~~~l~~~~~~~----~l~~--~V~~~g~---~~~~~~~~~~ 356 (396)
+||+.+.+..++. ..++.|+-+....-.+ .+++.++++++.+. |-.+ -|+++.. .+++..+|+.
T Consensus 275 ~Afe~fL~~~Pe~---~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ 351 (474)
T PRK10117 275 LAYEALLEKYPQH---HGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRY 351 (474)
T ss_pred HHHHHHHHhChhh---cCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHh
Confidence 9999998877664 2467788776432122 12344555555442 2211 2555543 2788999999
Q ss_pred cCEEEecCCCCCCCccHHHHHHHhcCC-----CEEEcCCCCCCC
Q 016053 357 IDVLVQNSQAWGECFGRITIEAMAFQL-----PVLVLSELHPSI 395 (396)
Q Consensus 357 aDv~v~pS~~~~E~fg~~~lEAma~G~-----PVI~t~~gG~~~ 395 (396)
|||++.+|. .+|+-++..|+.||.. .+|.|...|++.
T Consensus 352 ADv~lVTpl--RDGMNLVAkEyva~q~~~~~GvLILSefAGaA~ 393 (474)
T PRK10117 352 SDVGLVTPL--RDGMNLVAKEYVAAQDPANPGVLVLSQFAGAAN 393 (474)
T ss_pred ccEEEeccc--ccccccccchheeeecCCCCccEEEecccchHH
Confidence 999999999 9999999999999976 388888888763
No 104
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.95 E-value=2.5e-08 Score=95.92 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=102.1
Q ss_pred cccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEeccc
Q 016053 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (396)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~ 280 (396)
.+.+.++.......+.+.++ ++ +..++.++|-|+-.+ +... ......+++++.
T Consensus 238 ~~~~~iIv~T~~q~~di~~r----~~-~~~~~~~ip~g~i~~-~~~~-------------------~r~~~~~l~~t~-- 290 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKEL----LD-NEYQEQISQLGYLYP-FKKD-------------------NKYRKQALILTN-- 290 (438)
T ss_pred cccCeEEeCCHHHHHHHHHH----hC-cccCceEEEEEEEEe-eccc-------------------cCCcccEEEECC--
Confidence 56666776665555555543 32 245677888776522 1100 012334555662
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcC-CHHHHHHHcCE
Q 016053 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL-TVAPYLAAIDV 359 (396)
Q Consensus 281 ~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~-~~~~~~~~aDv 359 (396)
+..|++++++.+.+ |+++|.| |.+. +..+.|.++ .++ ++.+.+-|... ++.++|..||+
T Consensus 291 -----s~~I~~i~~Lv~~l-------Pd~~f~I-ga~t----e~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dl 350 (438)
T TIGR02919 291 -----SDQIEHLEEIVQAL-------PDYHFHI-AALT----EMSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDI 350 (438)
T ss_pred -----HHHHHHHHHHHHhC-------CCcEEEE-EecC----cccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccE
Confidence 99999999998755 9999999 7765 224777777 655 46666667665 89999999999
Q ss_pred EEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 360 LVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 360 ~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
++..|. .|++++++.||+..|+|+++.+.-
T Consensus 351 yLdin~--~e~~~~al~eA~~~G~pI~afd~t 380 (438)
T TIGR02919 351 YLDINH--GNEILNAVRRAFEYNLLILGFEET 380 (438)
T ss_pred EEEccc--cccHHHHHHHHHHcCCcEEEEecc
Confidence 999999 999999999999999999999875
No 105
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.94 E-value=3e-08 Score=96.23 Aligned_cols=236 Identities=13% Similarity=0.098 Sum_probs=128.9
Q ss_pred cCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc-------CchhhhccccccccceeeccccHHHHHHHH
Q 016053 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (396)
..-|+|++|+......-..+.+ ..|. .++.++.|...+.. ......+-+..+|.+-..+....+.+....
T Consensus 140 ~~~D~VWVhDYhL~llP~~LR~-~~~~--~~IgfFlHiPFPs~e~fr~lP~r~eiL~glL~aDlIgFqt~~~~~nFl~~~ 216 (474)
T PF00982_consen 140 RPGDLVWVHDYHLMLLPQMLRE-RGPD--ARIGFFLHIPFPSSEIFRCLPWREEILRGLLGADLIGFQTFEYARNFLSCC 216 (474)
T ss_dssp -TT-EEEEESGGGTTHHHHHHH-TT----SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcHHHHHHHHHh-hcCC--ceEeeEEecCCCCHHHHhhCCcHHHHHHHhhcCCEEEEecHHHHHHHHHHH
Confidence 5669999999655444444444 3444 56777888652111 111122223344444444444444444444
Q ss_pred Hhhhccc--C-----------CCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHH
Q 016053 222 RERLRIK--M-----------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLF 288 (396)
Q Consensus 222 ~~~~g~~--~-----------~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~l 288 (396)
.+..|.+ . -++.+.|.|||.+.+.......+-....++++++++ .+..+|+-+.|++..||+..=
T Consensus 217 ~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~k 294 (474)
T PF00982_consen 217 KRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFK--GKRKIIVGVDRLDYTKGIPEK 294 (474)
T ss_dssp HHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHH
T ss_pred HHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHH
Confidence 4344332 1 237788899999988654332222333567788775 335889999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEecCCCccc----hHHHHHHHHHHh----cCCCC--cEEEecC---cCCHHHHHH
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQT----KFESELRNYVMQ----KKIQD--RVHFVNK---TLTVAPYLA 355 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~----~~~~~l~~~~~~----~~l~~--~V~~~g~---~~~~~~~~~ 355 (396)
++|++++.++.++. ..++.|+-++.....+. ++..++.+++.+ +|-.+ -|.++.. .+++..+|+
T Consensus 295 l~Afe~fL~~~P~~---~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~ 371 (474)
T PF00982_consen 295 LRAFERFLERYPEY---RGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYR 371 (474)
T ss_dssp HHHHHHHHHH-GGG---TTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHH
T ss_pred HHHHHHHHHhCcCc---cCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHH
Confidence 99999999988774 25688888876433322 244555555543 33222 2555554 278999999
Q ss_pred HcCEEEecCCCCCCCccHHHHHHHhcCCC----EEEcCCCCCC
Q 016053 356 AIDVLVQNSQAWGECFGRITIEAMAFQLP----VLVLSELHPS 394 (396)
Q Consensus 356 ~aDv~v~pS~~~~E~fg~~~lEAma~G~P----VI~t~~gG~~ 394 (396)
.||+++.+|. .+|+-++..|+.+|..+ +|.|...|++
T Consensus 372 ~aDv~lvTsl--rDGmNLva~Eyva~q~~~~GvLiLSefaGaa 412 (474)
T PF00982_consen 372 AADVALVTSL--RDGMNLVAKEYVACQDDNPGVLILSEFAGAA 412 (474)
T ss_dssp H-SEEEE--S--SBS--HHHHHHHHHS-TS--EEEEETTBGGG
T ss_pred hhhhEEecch--hhccCCcceEEEEEecCCCCceEeeccCCHH
Confidence 9999999999 99999999999999876 7777777765
No 106
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.91 E-value=1.4e-07 Score=88.09 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=69.0
Q ss_pred CCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc
Q 016053 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (396)
Q Consensus 268 ~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (396)
+++.+++++|..... .++++++++ ++..++++|... .+ ...++|++.++.
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~-----------~~~~~~v~g~~~-------~~--------~~~~ni~~~~~~ 240 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL-----------PDYQFIVFGPNA-------AD--------PRPGNIHVRPFS 240 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC-----------CCCeEEEEcCCc-------cc--------ccCCCEEEeecC
Confidence 466788899987555 556666653 678999998652 00 014789999987
Q ss_pred -CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCC
Q 016053 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSI 395 (396)
Q Consensus 348 -~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~ 395 (396)
+++.+++++||++|..+- -.++.||+++|+|+|.-...|..+
T Consensus 241 ~~~~~~~m~~ad~vIs~~G------~~t~~Ea~~~g~P~l~ip~~~~~E 283 (318)
T PF13528_consen 241 TPDFAELMAAADLVISKGG------YTTISEALALGKPALVIPRPGQDE 283 (318)
T ss_pred hHHHHHHHHhCCEEEECCC------HHHHHHHHHcCCCEEEEeCCCCch
Confidence 899999999999995332 255899999999999998877543
No 107
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.86 E-value=1.1e-06 Score=81.27 Aligned_cols=250 Identities=14% Similarity=0.106 Sum_probs=141.7
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch------------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------ 142 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 142 (396)
|||++-..... .-.++..+++.|.++||+|.+.+.+... ..+.+...|++.......
T Consensus 1 MkIwiDi~~p~---hvhfFk~~I~eL~~~GheV~it~R~~~~--------~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~ 69 (335)
T PF04007_consen 1 MKIWIDITHPA---HVHFFKNIIRELEKRGHEVLITARDKDE--------TEELLDLYGIDYIVIGKHGDSLYGKLLESI 69 (335)
T ss_pred CeEEEECCCch---HHHHHHHHHHHHHhCCCEEEEEEeccch--------HHHHHHHcCCCeEEEcCCCCCHHHHHHHHH
Confidence 46665542222 2378999999999999999999965542 445555666666544321
Q ss_pred ------hhhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHH
Q 016053 143 ------ETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEY 216 (396)
Q Consensus 143 ------~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 216 (396)
..+....+||++++....... ..+...++| .+....+.+.. ......++.++.+++........
T Consensus 70 ~R~~~l~~~~~~~~pDv~is~~s~~a~--~va~~lgiP-----~I~f~D~e~a~---~~~~Lt~Pla~~i~~P~~~~~~~ 139 (335)
T PF04007_consen 70 ERQYKLLKLIKKFKPDVAISFGSPEAA--RVAFGLGIP-----SIVFNDTEHAI---AQNRLTLPLADVIITPEAIPKEF 139 (335)
T ss_pred HHHHHHHHHHHhhCCCEEEecCcHHHH--HHHHHhCCC-----eEEEecCchhh---ccceeehhcCCeeECCcccCHHH
Confidence 122234799999988765443 233445555 33333332111 11223345667777666665544
Q ss_pred HHHHHHhhhcccCCCEEEE-ecCCccch----hhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEeccc--CCCCHHH-H
Q 016053 217 WKNRTRERLRIKMPDTYVV-HLGNSKEL----MEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS--RGKGQDL-F 288 (396)
Q Consensus 217 ~~~~~~~~~g~~~~k~~vI-~ngid~~~----~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~--~~Kg~~~-l 288 (396)
+. ++|.. + .+. +||++.-- |.|. .++.+++|+++++++++=..... ..+|-.. +
T Consensus 140 ~~-----~~G~~-~--~i~~y~G~~E~ayl~~F~Pd----------~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~ 201 (335)
T PF04007_consen 140 LK-----RFGAK-N--QIRTYNGYKELAYLHPFKPD----------PEVLKELGLDDEPYIVVRPEAWKASYDNGKKSIL 201 (335)
T ss_pred HH-----hcCCc-C--CEEEECCeeeEEeecCCCCC----------hhHHHHcCCCCCCEEEEEeccccCeeecCccchH
Confidence 33 45544 2 344 78877532 3332 45788999877766654332221 1222222 3
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCC
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWG 368 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~ 368 (396)
-+.++. ++++ .+. ++++.... .. ....++.+ +.+....-+...++..||++|-
T Consensus 202 ~~ii~~----L~~~----~~~-vV~ipr~~-----~~---~~~~~~~~----~~i~~~~vd~~~Ll~~a~l~Ig------ 254 (335)
T PF04007_consen 202 PEIIEE----LEKY----GRN-VVIIPRYE-----DQ---RELFEKYG----VIIPPEPVDGLDLLYYADLVIG------ 254 (335)
T ss_pred HHHHHH----HHhh----Cce-EEEecCCc-----ch---hhHHhccC----ccccCCCCCHHHHHHhcCEEEe------
Confidence 333333 3332 233 55565432 11 12233322 4444444566789999999994
Q ss_pred CCccHHHHHHHhcCCCEEEcCCC
Q 016053 369 ECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 369 E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+| |....||...|+|.|++..|
T Consensus 255 ~g-gTMa~EAA~LGtPaIs~~~g 276 (335)
T PF04007_consen 255 GG-GTMAREAALLGTPAISCFPG 276 (335)
T ss_pred CC-cHHHHHHHHhCCCEEEecCC
Confidence 33 36679999999999998644
No 108
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.76 E-value=1.6e-07 Score=78.88 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=92.7
Q ss_pred ccEEEEEecc---CCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchh-----h-
Q 016053 74 SKLVLLVSHE---LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-----T- 144 (396)
Q Consensus 74 ~~kIl~v~~~---~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~- 144 (396)
|++|+++.+. ...||.|+++.+|+..|.++|++|+|.|...... .......|++++..+..+ .
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~--------~~~~~y~gv~l~~i~~~~~g~~~si 72 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYP--------YKEFEYNGVRLVYIPAPKNGSAESI 72 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCC--------CCCcccCCeEEEEeCCCCCCchHHH
Confidence 4689999876 3349999999999999999999999999543321 112334566665543221 1
Q ss_pred ------------hhh--ccCCcEEEEcCch-hhHHHHHHHhcCCCccccceeeeeeecccccCchhh-------hc----
Q 016053 145 ------------INT--ALKADLIVLNTAV-AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDY-------VK---- 198 (396)
Q Consensus 145 ------------~~~--~~~~DiV~~~~~~-~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~-------~~---- 198 (396)
+.+ ..+.|+++++... ++.++..... ++..+.+++...|+.. |...+| .+
T Consensus 73 ~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~--~~~~g~~v~vN~DGlE--WkR~KW~~~~k~~lk~~E~ 148 (185)
T PF09314_consen 73 IYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRK--LRKKGGKVVVNMDGLE--WKRAKWGRPAKKYLKFSEK 148 (185)
T ss_pred HHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHh--hhhcCCcEEECCCcch--hhhhhcCHHHHHHHHHHHH
Confidence 011 1357899888754 2222222221 1111234676677652 222221 11
Q ss_pred -cccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCc
Q 016053 199 -HLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNS 240 (396)
Q Consensus 199 -~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid 240 (396)
..+..+.++++|....+++.+ +++ ..+..+|++|.|
T Consensus 149 ~avk~ad~lIaDs~~I~~y~~~----~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 149 LAVKYADRLIADSKGIQDYIKE----RYG--RKKSTFIAYGAD 185 (185)
T ss_pred HHHHhCCEEEEcCHHHHHHHHH----HcC--CCCcEEecCCCC
Confidence 235788899999999888877 444 456899999976
No 109
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.76 E-value=1.4e-06 Score=81.91 Aligned_cols=249 Identities=17% Similarity=0.173 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEE-cC-----c-----------------hhhh
Q 016053 89 GPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-AK-----G-----------------QETI 145 (396)
Q Consensus 89 ~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~-----------------~~~~ 145 (396)
|..+..+|+++|++++-++.++.-.++. +...|++.+. .. + ....
T Consensus 10 GD~~ga~Li~~Lk~~~p~~~~~GvGG~~------------M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~ 77 (373)
T PF02684_consen 10 GDLHGARLIRALKARDPDIEFYGVGGPR------------MQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVER 77 (373)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEechH------------HHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999988778777744431 1222333211 10 0 0122
Q ss_pred hhccCCcEEEEcC-chhhH-HHHHHHhcCCCccccceeeeeeecccccCchhhhcc-ccccccceeeccccHHHHHHHHH
Q 016053 146 NTALKADLIVLNT-AVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKH-LPLVAGAMIDSHVTAEYWKNRTR 222 (396)
Q Consensus 146 ~~~~~~DiV~~~~-~~~~~-~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~ 222 (396)
....+||+++.-+ |..+. ....+++.+.+ .+++|++--. -+.+.....+. -+.+|...+...+-.+++.+
T Consensus 78 ~~~~~pd~vIlID~pgFNlrlak~lk~~~~~---~~viyYI~Pq-vWAWr~~R~~~i~~~~D~ll~ifPFE~~~y~~--- 150 (373)
T PF02684_consen 78 IKEEKPDVVILIDYPGFNLRLAKKLKKRGIP---IKVIYYISPQ-VWAWRPGRAKKIKKYVDHLLVIFPFEPEFYKK--- 150 (373)
T ss_pred HHHcCCCEEEEeCCCCccHHHHHHHHHhCCC---ceEEEEECCc-eeeeCccHHHHHHHHHhheeECCcccHHHHhc---
Confidence 2458999998766 43333 44455555543 2355544421 12233333333 35678888888887777663
Q ss_pred hhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEE-EEeccc-C-CCCHHHHHHHHHHHHHHH
Q 016053 223 ERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA-IINSVS-R-GKGQDLFLHSFYESLELI 299 (396)
Q Consensus 223 ~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il-~vG~l~-~-~Kg~~~li~a~~~l~~~~ 299 (396)
.|+ ++..+.|++=. ..... ..+...++.+ +++++++|+ ..|+=. . .+....++++++++.+
T Consensus 151 --~g~---~~~~VGHPl~d-~~~~~-------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~-- 214 (373)
T PF02684_consen 151 --HGV---PVTYVGHPLLD-EVKPE-------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK-- 214 (373)
T ss_pred --cCC---CeEEECCcchh-hhccC-------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH--
Confidence 453 36677766421 11111 1134556666 766665444 446522 2 4556888888888776
Q ss_pred HhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHH
Q 016053 300 KEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM 379 (396)
Q Consensus 300 ~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAm 379 (396)
++|++++++..... ...+.+++...+.+....+.. ...+-.+.+++||+.+..| |.+.+|++
T Consensus 215 -----~~p~l~fvvp~a~~----~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~m~~ad~al~~S-------GTaTLE~A 276 (373)
T PF02684_consen 215 -----QRPDLQFVVPVAPE----VHEELIEEILAEYPPDVSIVI--IEGESYDAMAAADAALAAS-------GTATLEAA 276 (373)
T ss_pred -----hCCCeEEEEecCCH----HHHHHHHHHHHhhCCCCeEEE--cCCchHHHHHhCcchhhcC-------CHHHHHHH
Confidence 45899999887542 233445666665543322222 2356788999999999877 49999999
Q ss_pred hcCCCEEEcCC
Q 016053 380 AFQLPVLVLSE 390 (396)
Q Consensus 380 a~G~PVI~t~~ 390 (396)
.+|+|.|..--
T Consensus 277 l~g~P~Vv~Yk 287 (373)
T PF02684_consen 277 LLGVPMVVAYK 287 (373)
T ss_pred HhCCCEEEEEc
Confidence 99999987543
No 110
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.76 E-value=4.5e-07 Score=94.07 Aligned_cols=223 Identities=10% Similarity=0.060 Sum_probs=136.9
Q ss_pred cEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc-------CchhhhccccccccceeeccccHHHHHHHHHhh
Q 016053 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-------FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (396)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (396)
|+|++|+......-..+++ ..|. .++-++.|...+.. +.....+-+..+|-+=..+...++.+.....+.
T Consensus 203 d~VWVhDYhL~llP~~LR~-~~~~--~~IgfFlHiPFPs~eifr~LP~r~eiL~glL~aDlIGFht~~yar~Fl~~~~r~ 279 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRK-RFNR--VKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRM 279 (854)
T ss_pred CEEEEeCchhhHHHHHHHh-hCCC--CcEEEEecCCCCChHHHhhCCcHHHHHHHHhcCCeEEecCHHHHHHHHHHHHHH
Confidence 8999999655444333433 3444 45777788652111 111122222344444444444444444333333
Q ss_pred hcccC---------------CCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHH
Q 016053 225 LRIKM---------------PDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFL 289 (396)
Q Consensus 225 ~g~~~---------------~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li 289 (396)
.|++. -++.+.|-|||.+.|..............+++++++- +++.+|+-+.|++..||+..=+
T Consensus 280 lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl 358 (854)
T PLN02205 280 LGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKL 358 (854)
T ss_pred hCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhcc-CCCEEEEEccCcccccCHHHHH
Confidence 33321 2366789999999886543322223334567777753 3567899999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEEecCCCcc----chHHHHHHHHHHh----cCCC--CcEEEecC---cCCHHHHHHH
Q 016053 290 HSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ----TKFESELRNYVMQ----KKIQ--DRVHFVNK---TLTVAPYLAA 356 (396)
Q Consensus 290 ~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~----~~~~~~l~~~~~~----~~l~--~~V~~~g~---~~~~~~~~~~ 356 (396)
+|++++.+..++. ..++.|+-+..-.-.+ .+++.++.+.+.+ +|-. ..|+++.. .+++.++|+.
T Consensus 359 ~A~e~~L~~~P~~---~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ 435 (854)
T PLN02205 359 LAMEQLLMQHPEW---QGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVV 435 (854)
T ss_pred HHHHHHHHhCccc---cCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHh
Confidence 9999998755442 1245677666432111 1233344455543 2221 13666654 2789999999
Q ss_pred cCEEEecCCCCCCCccHHHHHHHhcCC
Q 016053 357 IDVLVQNSQAWGECFGRITIEAMAFQL 383 (396)
Q Consensus 357 aDv~v~pS~~~~E~fg~~~lEAma~G~ 383 (396)
||+++.++. .+|+-++..|+.+|..
T Consensus 436 ADv~lVT~l--RDGMNLva~Eyia~~~ 460 (854)
T PLN02205 436 AECCLVTAV--RDGMNLIPYEYIISRQ 460 (854)
T ss_pred ccEEEeccc--cccccccchheeEEcc
Confidence 999999999 9999999999999865
No 111
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.4e-06 Score=83.44 Aligned_cols=233 Identities=14% Similarity=0.094 Sum_probs=144.7
Q ss_pred cCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccc----------cccccceeeccccHHHHH
Q 016053 149 LKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHL----------PLVAGAMIDSHVTAEYWK 218 (396)
Q Consensus 149 ~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~~~ 218 (396)
..=|+|++|+....+.-..+.. ..|. .++.++.|... -.....+.+ ..++.+-..+...+..+.
T Consensus 146 ~~gDiIWVhDYhL~L~P~mlR~-~~~~--~~IgfFlHiPf---PssEvfr~lP~r~eIl~gll~~dligFqt~~y~~nF~ 219 (486)
T COG0380 146 EPGDIIWVHDYHLLLVPQMLRE-RIPD--AKIGFFLHIPF---PSSEVFRCLPWREEILEGLLGADLIGFQTESYARNFL 219 (486)
T ss_pred CCCCEEEEEechhhhhHHHHHH-hCCC--ceEEEEEeCCC---CCHHHHhhCchHHHHHHHhhcCCeeEecCHHHHHHHH
Confidence 4449999999655444344443 4554 35777777542 112222222 223323233333333333
Q ss_pred HHHHhhhc-------------ccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCH
Q 016053 219 NRTRERLR-------------IKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ 285 (396)
Q Consensus 219 ~~~~~~~g-------------~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~ 285 (396)
....+..+ -...++...|-|||...|.........+..-.++++.++ .+..+|+.+.|++.-||+
T Consensus 220 ~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~--~~~kiivgvDRlDy~kGi 297 (486)
T COG0380 220 DLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELG--RNKKLIVGVDRLDYSKGI 297 (486)
T ss_pred HHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhc--CCceEEEEehhcccccCc
Confidence 22222111 122457789999999988755322221122345666654 347889899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccch----HHHHHHHHHHhc----CCC--CcEEEecC---cCCHHH
Q 016053 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK----FESELRNYVMQK----KIQ--DRVHFVNK---TLTVAP 352 (396)
Q Consensus 286 ~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~----~~~~l~~~~~~~----~l~--~~V~~~g~---~~~~~~ 352 (396)
..=+.||+++.+..++. ..++.|+-++....++-+ ++.++++.+.+. |-. .-|+|+-. .+++..
T Consensus 298 ~~rl~Afe~lL~~~Pe~---~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~a 374 (486)
T COG0380 298 PQRLLAFERLLEEYPEW---RGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLA 374 (486)
T ss_pred HHHHHHHHHHHHhChhh---hCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHH
Confidence 99999999999877764 246788888876644433 333444444432 211 13455544 278999
Q ss_pred HHHHcCEEEecCCCCCCCccHHHHHHHhcCC----CEEEcCCCCCC
Q 016053 353 YLAAIDVLVQNSQAWGECFGRITIEAMAFQL----PVLVLSELHPS 394 (396)
Q Consensus 353 ~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~----PVI~t~~gG~~ 394 (396)
+|..||+++.+|. .+|+-++..|+.||-- +.|-|..-|++
T Consensus 375 l~~~aDv~lVtpl--rDGMNLvakEyVa~q~~~~G~LiLSeFaGaa 418 (486)
T COG0380 375 LYRAADVMLVTPL--RDGMNLVAKEYVAAQRDKPGVLILSEFAGAA 418 (486)
T ss_pred HHhhhceeeeccc--cccccHHHHHHHHhhcCCCCcEEEeccccch
Confidence 9999999999999 9999999999999854 77777777765
No 112
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.74 E-value=1.1e-06 Score=84.70 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=61.3
Q ss_pred CCCEEEEEEecccCC---CCHHHHHHHHHHHHHHHHhhccCCCCEEE-EEEecCCCccchHHHHHHHHHHhcCCCCcEEE
Q 016053 268 NEDLLFAIINSVSRG---KGQDLFLHSFYESLELIKEKKLEVPSVHA-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHF 343 (396)
Q Consensus 268 ~~~~~il~vG~l~~~---Kg~~~li~a~~~l~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~ 343 (396)
.+..+++..|+.... +-...++++++. .+.++ +.+|... ... ..++++|.+
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~------------~~~~~i~~~g~~~-----~~~--------~~~~~~v~~ 292 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVAT------------LGQRAILSLGWGG-----LGA--------EDLPDNVRV 292 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHH------------cCCeEEEEccCcc-----ccc--------cCCCCceEE
Confidence 455677778887542 233344444443 24454 4455432 111 245679999
Q ss_pred ecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 344 VNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 344 ~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
.++. +...+|..||++|. .|-..++.||+++|+|+|.....+
T Consensus 293 ~~~~-p~~~ll~~~d~~I~------hgG~~t~~eal~~GvP~v~~P~~~ 334 (401)
T cd03784 293 VDFV-PHDWLLPRCAAVVH------HGGAGTTAAALRAGVPQLVVPFFG 334 (401)
T ss_pred eCCC-CHHHHhhhhheeee------cCCchhHHHHHHcCCCEEeeCCCC
Confidence 9997 47789999999993 334588999999999999987654
No 113
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.72 E-value=2.5e-06 Score=81.01 Aligned_cols=272 Identities=15% Similarity=0.146 Sum_probs=135.2
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHh-CCCEEEEEeccCCCCchhhhhhhhhhhhhcceEE-----EEcC---c----
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQV-----ISAK---G---- 141 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~---- 141 (396)
|||+++...-+-- ..+.-+.++|++ .++++.++........ .... ........++.+ +.+. .
T Consensus 1 ~ki~~v~GtRpe~---iklapv~~~l~~~~~~~~~lv~tGqH~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (365)
T TIGR03568 1 KKICVVTGTRADY---GLLRPLLKALQDDPDLELQLIVTGMHLSP-EYGN-TVNEIEKDGFDIDEKIEILLDSDSNAGMA 75 (365)
T ss_pred CeEEEEEecChhH---HHHHHHHHHHhcCCCCcEEEEEeCCCCCh-hhcc-HHHHHHHcCCCCCCccccccCCCCCCCHH
Confidence 4788887432222 367788888887 4789888874433211 0000 001111112211 1111 1
Q ss_pred ---------hhhhhhccCCcEEEEcCch-h-hHHHHHHHhcCCCccccceeeeeeecc-cccCchhhhc-ccccc-ccce
Q 016053 142 ---------QETINTALKADLIVLNTAV-A-GKWLDAVLKEDVPRVLPNVLWWIHEMR-GHYFKLDYVK-HLPLV-AGAM 207 (396)
Q Consensus 142 ---------~~~~~~~~~~DiV~~~~~~-~-~~~~~~~~~~~~~~~~~~vv~~~h~~~-~~~~~~~~~~-~~~~~-~~~~ 207 (396)
...+....+||+|++++-. . ......+...++| ++ ++|... ..-......+ ...+. +..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IP-----v~-HveaG~rs~~~~eE~~r~~i~~la~l~f 149 (365)
T TIGR03568 76 KSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIP-----IA-HIHGGEVTEGAIDESIRHAITKLSHLHF 149 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCc-----EE-EEECCccCCCCchHHHHHHHHHHHhhcc
Confidence 1233456899999999832 2 2223345566666 22 344331 1111111111 11121 2222
Q ss_pred eeccccHHHHHHHHHhhhcccCCCEEEEecCC-ccchhhhhhhhHHHHHhHHHHHHHcCCCCC-CEEEEEEeccc--CCC
Q 016053 208 IDSHVTAEYWKNRTRERLRIKMPDTYVVHLGN-SKELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINSVS--RGK 283 (396)
Q Consensus 208 ~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngi-d~~~~~~~~~~~~~~~~~~~~r~~~g~~~~-~~~il~vG~l~--~~K 283 (396)
+..... .+++. +.|.++.++.++.|.. |.-.. ... ..++++.+++|++.+ +++++.+-+-. ...
T Consensus 150 ~~t~~~----~~~L~-~eg~~~~~i~~tG~~~iD~l~~-~~~------~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~ 217 (365)
T TIGR03568 150 VATEEY----RQRVI-QMGEDPDRVFNVGSPGLDNILS-LDL------LSKEELEEKLGIDLDKPYALVTFHPVTLEKES 217 (365)
T ss_pred CCCHHH----HHHHH-HcCCCCCcEEEECCcHHHHHHh-hhc------cCHHHHHHHhCCCCCCCEEEEEeCCCcccccC
Confidence 222222 22222 4577778888887643 33211 110 124567888998643 55555554432 333
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCC-CccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEE
Q 016053 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM-NAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVL 360 (396)
Q Consensus 284 g~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~-~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~ 360 (396)
..+.+.+.++.+.+. ..++ +++.+.. +.+....+.+++...+ .++|.+++.. .++..+++.||++
T Consensus 218 ~~~~l~~li~~L~~~-------~~~~--~vi~P~~~p~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~~a~~v 285 (365)
T TIGR03568 218 AEEQIKELLKALDEL-------NKNY--IFTYPNADAGSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLKNADAV 285 (365)
T ss_pred chHHHHHHHHHHHHh-------ccCC--EEEEeCCCCCchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHHhCCEE
Confidence 333444444443321 0234 3343221 1222233444444221 3579999975 7899999999999
Q ss_pred EecCCCCCCCccHHHHHHHhcCCCEEEc
Q 016053 361 VQNSQAWGECFGRITIEAMAFQLPVLVL 388 (396)
Q Consensus 361 v~pS~~~~E~fg~~~lEAma~G~PVI~t 388 (396)
|-.|. |.. .||.++|+|||+-
T Consensus 286 itdSS------ggi-~EA~~lg~Pvv~l 306 (365)
T TIGR03568 286 IGNSS------SGI-IEAPSFGVPTINI 306 (365)
T ss_pred EEcCh------hHH-HhhhhcCCCEEee
Confidence 95553 333 8999999999964
No 114
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.70 E-value=2.3e-06 Score=78.78 Aligned_cols=269 Identities=17% Similarity=0.127 Sum_probs=144.5
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhh--hhhhcce-EEEE-cCc-------hh
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEH--KMWDRGV-QVIS-AKG-------QE 143 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~-~~~-------~~ 143 (396)
+||.++..+.+. ...-..|.++|+++=-++.++.-.++.-.......+.+ .+.-.|+ .++. +.. ..
T Consensus 2 ~ki~i~AGE~SG---DllGa~LikaLk~~~~~~efvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~ 78 (381)
T COG0763 2 LKIALSAGEASG---DLLGAGLIKALKARYPDVEFVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELV 78 (381)
T ss_pred ceEEEEecccch---hhHHHHHHHHHHhhCCCeEEEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 588888855432 47778899999987226666653332100000000000 0010110 0000 000 01
Q ss_pred hhhhccCCcEEEEcC-chhhH-HHHHHHhcCCCccccceeeeeeecccccCchh-hhccccccccceeeccccHHHHHHH
Q 016053 144 TINTALKADLIVLNT-AVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-YVKHLPLVAGAMIDSHVTAEYWKNR 220 (396)
Q Consensus 144 ~~~~~~~~DiV~~~~-~~~~~-~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~ 220 (396)
......+||++++-+ |-... ....+++.+ |. .|+++++--. -+.|+.. .....+..|.+.+...+-..++.
T Consensus 79 ~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~-p~--i~iihYV~Ps-VWAWr~~Ra~~i~~~~D~lLailPFE~~~y~-- 152 (381)
T COG0763 79 RYILANKPDVLILIDSPDFNLRVAKKLRKAG-PK--IKIIHYVSPS-VWAWRPKRAVKIAKYVDHLLAILPFEPAFYD-- 152 (381)
T ss_pred HHHHhcCCCEEEEeCCCCCchHHHHHHHHhC-CC--CCeEEEECcc-eeeechhhHHHHHHHhhHeeeecCCCHHHHH--
Confidence 112358999998776 43333 333344443 32 2233333211 1223322 34455678888888888777765
Q ss_pred HHhhhcccCCCEEEEecCCc-cchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEE-EEecccC--CCCHHHHHHHHHHHH
Q 016053 221 TRERLRIKMPDTYVVHLGNS-KELMEVAEDNVAKRVLREHVRESLGVRNEDLLFA-IINSVSR--GKGQDLFLHSFYESL 296 (396)
Q Consensus 221 ~~~~~g~~~~k~~vI~ngid-~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il-~vG~l~~--~Kg~~~li~a~~~l~ 296 (396)
++|.+ ...|.|..- ...+. .+++.+|+++|++.+..+++ ..|+=.. .+....+++|+.++.
T Consensus 153 ---k~g~~---~~yVGHpl~d~i~~~---------~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~ 217 (381)
T COG0763 153 ---KFGLP---CTYVGHPLADEIPLL---------PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELK 217 (381)
T ss_pred ---hcCCC---eEEeCChhhhhcccc---------ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 45544 556666542 22222 23667999999987665444 4454211 344455555555554
Q ss_pred HHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhc-CCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHH
Q 016053 297 ELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRIT 375 (396)
Q Consensus 297 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~ 375 (396)
+ ++|+.++++--... ..+.++....+. .....+++.+ .+-.+.+.+||+.+..| |.+.
T Consensus 218 ~-------~~~~~~~vlp~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~aD~al~aS-------GT~t 276 (381)
T COG0763 218 A-------RYPDLKFVLPLVNA-----KYRRIIEEALKWEVAGLSLILID--GEKRKAFAAADAALAAS-------GTAT 276 (381)
T ss_pred h-------hCCCceEEEecCcH-----HHHHHHHHHhhccccCceEEecC--chHHHHHHHhhHHHHhc-------cHHH
Confidence 4 45899999987653 333333333322 2112222222 34578999999998766 4999
Q ss_pred HHHHhcCCCEEEc
Q 016053 376 IEAMAFQLPVLVL 388 (396)
Q Consensus 376 lEAma~G~PVI~t 388 (396)
+|+|.+|+|.|++
T Consensus 277 LE~aL~g~P~Vv~ 289 (381)
T COG0763 277 LEAALAGTPMVVA 289 (381)
T ss_pred HHHHHhCCCEEEE
Confidence 9999999999875
No 115
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.2e-06 Score=83.72 Aligned_cols=270 Identities=14% Similarity=0.093 Sum_probs=157.2
Q ss_pred cccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc--h---hhh
Q 016053 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG--Q---ETI 145 (396)
Q Consensus 71 ~m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~ 145 (396)
..++.||.++++.+..-........+.+++.+..+||..+....+..+ . +.+.+.-.--..++... . ..-
T Consensus 256 ~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~d-a----l~~rI~a~~~~~~~~~~~dd~e~a~~ 330 (620)
T COG3914 256 NGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTD-A----LQERISAAVEKWYPIGRMDDAEIANA 330 (620)
T ss_pred cccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCch-h----HHHHHHHhhhheeccCCcCHHHHHHH
Confidence 345679999999877765568888888988888899999885533221 1 22222222223344332 1 112
Q ss_pred hhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceeec----cccHHHHHHHH
Q 016053 146 NTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDS----HVTAEYWKNRT 221 (396)
Q Consensus 146 ~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~~~~~ 221 (396)
....++||.+--+....--.......+ | .|+..+.-++.+.. ..+..+.++..- .....++.+++
T Consensus 331 I~~d~IdILvDl~g~T~d~r~~v~A~R-p---APiqvswlGy~aT~-------g~p~~DY~I~D~y~vPp~ae~yysEkl 399 (620)
T COG3914 331 IRTDGIDILVDLDGHTVDTRCQVFAHR-P---APIQVSWLGYPATT-------GSPNMDYFISDPYTVPPTAEEYYSEKL 399 (620)
T ss_pred HHhcCCeEEEeccCceeccchhhhhcC-C---CceEEeeccccccc-------CCCcceEEeeCceecCchHHHHHHHHH
Confidence 234677877543321110001111111 1 22222111111000 112233333322 34445555543
Q ss_pred HhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHh
Q 016053 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKE 301 (396)
Q Consensus 222 ~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~ 301 (396)
. .++ -.+-++| .+.+...+ --|.++|++++.+++++.++ ..|-...+.+.-.++.+
T Consensus 400 ~---RLp-----~cy~p~d--~~~~v~p~--------~sR~~lglp~~avVf~c~~n--~~K~~pev~~~wmqIL~---- 455 (620)
T COG3914 400 W---RLP-----QCYQPVD--GFEPVTPP--------PSRAQLGLPEDAVVFCCFNN--YFKITPEVFALWMQILS---- 455 (620)
T ss_pred H---hcc-----cccCCCC--CcccCCCC--------cchhhcCCCCCeEEEEecCC--cccCCHHHHHHHHHHHH----
Confidence 3 122 1122222 22221111 13788999888777766655 57777777766666555
Q ss_pred hccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCC-CcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHH
Q 016053 302 KKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (396)
Q Consensus 302 ~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEA 378 (396)
..|+-.|++.|.|+ +.+....+++.+++.|+. ++..|.+.. ++..+.|..||+++-+. .-+-..+.+||
T Consensus 456 ---~vP~Svl~L~~~~~--~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTy---PY~g~TTa~da 527 (620)
T COG3914 456 ---AVPNSVLLLKAGGD--DAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTY---PYGGHTTASDA 527 (620)
T ss_pred ---hCCCcEEEEecCCC--cHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecc---cCCCccchHHH
Confidence 34899999999874 335788999999999987 799999985 67889999999999754 35667889999
Q ss_pred HhcCCCEEEc
Q 016053 379 MAFQLPVLVL 388 (396)
Q Consensus 379 ma~G~PVI~t 388 (396)
+-+|+|||+-
T Consensus 528 Lwm~vPVlT~ 537 (620)
T COG3914 528 LWMGVPVLTR 537 (620)
T ss_pred HHhcCceeee
Confidence 9999999963
No 116
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.63 E-value=4.9e-06 Score=79.79 Aligned_cols=194 Identities=13% Similarity=0.029 Sum_probs=112.5
Q ss_pred CCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc--------------Cchhh------hccc-ccccccee
Q 016053 150 KADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY--------------FKLDY------VKHL-PLVAGAMI 208 (396)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~--------------~~~~~------~~~~-~~~~~~~~ 208 (396)
+||+|+...... .+..+...++|. +++-.|+....+ +.... .+.. +.++.+.+
T Consensus 93 ~p~~v~~~Gg~v--~~~aA~~~~~p~----~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~~v~~ 166 (396)
T TIGR03492 93 KGDLIVAVGDIV--PLLFAWLSGKPY----AFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCLAVFV 166 (396)
T ss_pred cCCEEEEECcHH--HHHHHHHcCCCc----eEEEeeccceeecCCCCCccchhhhccCCCccCHHHHHHhhchhhCEEeC
Confidence 999999988655 334455567664 343446542110 01111 2222 23333444
Q ss_pred eccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCC-EEEEEEeccc--CCCCH
Q 016053 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNED-LLFAIINSVS--RGKGQ 285 (396)
Q Consensus 209 ~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~-~~il~vG~l~--~~Kg~ 285 (396)
....+.+++. +.|. ++.++.|++-....... + . +++++. .+++.-|+-. ..+++
T Consensus 167 ~~~~t~~~l~-----~~g~---k~~~vGnPv~d~l~~~~---------~----~--~l~~~~~~lllLpGSR~ae~~~~l 223 (396)
T TIGR03492 167 RDRLTARDLR-----RQGV---RASYLGNPMMDGLEPPE---------R----K--PLLTGRFRIALLPGSRPPEAYRNL 223 (396)
T ss_pred CCHHHHHHHH-----HCCC---eEEEeCcCHHhcCcccc---------c----c--ccCCCCCEEEEECCCCHHHHHccH
Confidence 4444444433 3333 57777777633221100 0 1 444443 3444445542 25678
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEEEe-cCCCccchHHHHHHHHHHhcCCC--------------CcEEEecCcCCH
Q 016053 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIG-SDMNAQTKFESELRNYVMQKKIQ--------------DRVHFVNKTLTV 350 (396)
Q Consensus 286 ~~li~a~~~l~~~~~~~~~~~~~~~l~ivG-~g~~~~~~~~~~l~~~~~~~~l~--------------~~V~~~g~~~~~ 350 (396)
..++++++.+.+ + +++.+++.- ++. ..+.+++...+.+.. +++.+..+.+++
T Consensus 224 p~~l~al~~L~~-------~-~~~~~v~~~~~~~-----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (396)
T TIGR03492 224 KLLLRALEALPD-------S-QPFVFLAAIVPSL-----SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAF 290 (396)
T ss_pred HHHHHHHHHHhh-------C-CCeEEEEEeCCCC-----CHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhH
Confidence 899999988753 2 577776654 222 446666666654543 236666777889
Q ss_pred HHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 351 APYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 351 ~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
.++|++||++|..|- .+..|++++|+|+|....++
T Consensus 291 ~~~l~~ADlvI~rSG-------t~T~E~a~lg~P~Ilip~~~ 325 (396)
T TIGR03492 291 AEILHWADLGIAMAG-------TATEQAVGLGKPVIQLPGKG 325 (396)
T ss_pred HHHHHhCCEEEECcC-------HHHHHHHHhCCCEEEEeCCC
Confidence 999999999997553 55699999999999987443
No 117
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=1.5e-05 Score=74.23 Aligned_cols=263 Identities=14% Similarity=0.129 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHHHhC--CCEEEEEeccCCCCchhhhhhhhhhhhhc-ceEEEEcCc---hhhhhhccCCcEEEEcCc-h
Q 016053 88 GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISAKG---QETINTALKADLIVLNTA-V 160 (396)
Q Consensus 88 G~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~DiV~~~~~-~ 160 (396)
|--+.+.-|.+.|+++ ++.+.+-+..... .+. ....+... -..+++... .+++....+||+++.-.. .
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg--~e~---a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtEl 134 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTG--AER---AAALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIMETEL 134 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccH--HHH---HHHHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEEeccc
Confidence 4448899999999998 6676666522211 000 11112111 122233332 345556789999865542 2
Q ss_pred hhHHHHHHHhcCCCccccceeeeeeecccc---c--CchhhhccccccccceeeccccHHHHHHHHHhhhcccCCCEEEE
Q 016053 161 AGKWLDAVLKEDVPRVLPNVLWWIHEMRGH---Y--FKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 235 (396)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~---~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI 235 (396)
-...+..+.+.++|.+ +....-.... | .+......+...+.+++.+....+.+. ..|..+ +.+.
T Consensus 135 WPnli~e~~~~~~p~~----LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~-----~LGa~~--v~v~ 203 (419)
T COG1519 135 WPNLINELKRRGIPLV----LVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFR-----SLGAKP--VVVT 203 (419)
T ss_pred cHHHHHHHHHcCCCEE----EEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHH-----hcCCcc--eEEe
Confidence 2233445566677643 2112111101 1 122234455677777777776665544 456554 5554
Q ss_pred ecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEe
Q 016053 236 HLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIG 315 (396)
Q Consensus 236 ~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG 315 (396)
.|= .|...+.+ ......+.+|.+++.. +.+++..+. +..--..++++++.+++ ++|+..+++|-
T Consensus 204 GNl----Kfd~~~~~-~~~~~~~~~r~~l~~~--r~v~iaaST--H~GEeei~l~~~~~l~~-------~~~~~llIlVP 267 (419)
T COG1519 204 GNL----KFDIEPPP-QLAAELAALRRQLGGH--RPVWVAAST--HEGEEEIILDAHQALKK-------QFPNLLLILVP 267 (419)
T ss_pred cce----eecCCCCh-hhHHHHHHHHHhcCCC--CceEEEecC--CCchHHHHHHHHHHHHh-------hCCCceEEEec
Confidence 432 11111111 1133467788888764 566666666 33334558888888876 45899999997
Q ss_pred cCCCccchHHHHHHHHHHhcCCC------------C-cEEEecCcCCHHHHHHHcCEEEe-cCCCCCCCccHHHHHHHhc
Q 016053 316 SDMNAQTKFESELRNYVMQKKIQ------------D-RVHFVNKTLTVAPYLAAIDVLVQ-NSQAWGECFGRITIEAMAF 381 (396)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~~~~l~------------~-~V~~~g~~~~~~~~~~~aDv~v~-pS~~~~E~fg~~~lEAma~ 381 (396)
.=+ +-.+.+++++++.|+. + +|.+....-||..+|+.+|+.+. -|. .+--|--++|+.++
T Consensus 268 RHp----ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSl--v~~GGHN~LEpa~~ 341 (419)
T COG1519 268 RHP----ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSL--VPIGGHNPLEPAAF 341 (419)
T ss_pred CCh----hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcc--cCCCCCChhhHHHc
Confidence 654 4567788888888765 1 23222223689999999999554 566 66777889999999
Q ss_pred CCCEEEc
Q 016053 382 QLPVLVL 388 (396)
Q Consensus 382 G~PVI~t 388 (396)
|+|||.-
T Consensus 342 ~~pvi~G 348 (419)
T COG1519 342 GTPVIFG 348 (419)
T ss_pred CCCEEeC
Confidence 9999974
No 118
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.49 E-value=2.6e-05 Score=76.71 Aligned_cols=256 Identities=10% Similarity=0.067 Sum_probs=147.1
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEE-c--------------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVIS-A-------------- 139 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------- 139 (396)
.||.++..+. .|..+-.+|+++|+++.-++.+..-.++. +...|++.+. .
T Consensus 227 ~kIfI~AGE~---SGDlhgA~Li~aLk~~~P~i~~~GvGG~~------------M~aaG~e~l~d~~eLsVmG~~EVL~~ 291 (608)
T PRK01021 227 TSCFISAGEH---SGDTLGGNLLKEIKALYPDIHCFGVGGPQ------------MRAEGFHPLFNMEEFQVSGFWEVLLA 291 (608)
T ss_pred CeEEEEeccc---cHHHHHHHHHHHHHhcCCCcEEEEEccHH------------HHhCcCcccCChHHhhhhhHHHHHHH
Confidence 3788888544 23588889999999987777777644331 1122222210 0
Q ss_pred -C-------chhhhhhccCCcEEEEcC-chhhH-HHHHHHhcCCCccccceeeeeeecccccCchh-hhcccccccccee
Q 016053 140 -K-------GQETINTALKADLIVLNT-AVAGK-WLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLD-YVKHLPLVAGAMI 208 (396)
Q Consensus 140 -~-------~~~~~~~~~~~DiV~~~~-~~~~~-~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~-~~~~~~~~~~~~~ 208 (396)
+ ........++||++++-+ |..+. ....+++.++. .|+++.+--. -+.+... ..+..+.+|..++
T Consensus 292 l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~---ipviyYVsPq-VWAWR~~Rikki~k~vD~ll~ 367 (608)
T PRK01021 292 LFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYK---GKIVHYVCPS-IWAWRPKRKTILEKYLDLLLL 367 (608)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCC---CCEEEEECcc-ceeeCcchHHHHHHHhhhhee
Confidence 0 001222358999998765 44344 44455555531 1344443321 1223333 3334457788888
Q ss_pred eccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCE-EEEEEeccc--CCCCH
Q 016053 209 DSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDL-LFAIINSVS--RGKGQ 285 (396)
Q Consensus 209 ~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~-~il~vG~l~--~~Kg~ 285 (396)
...+-.+++.+ .|++ +..+.|+.=.. ... ..++++.|+++|+++++. +-+..|+=. -.+..
T Consensus 368 IfPFE~~~y~~-----~gv~---v~yVGHPL~d~-i~~-------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rll 431 (608)
T PRK01021 368 ILPFEQNLFKD-----SPLR---TVYLGHPLVET-ISS-------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNL 431 (608)
T ss_pred cCccCHHHHHh-----cCCC---eEEECCcHHhh-ccc-------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHH
Confidence 88887777653 4543 66666665211 111 112455788999975544 445556522 14566
Q ss_pred HHHHHHHH--HHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEec
Q 016053 286 DLFLHSFY--ESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 363 (396)
Q Consensus 286 ~~li~a~~--~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~p 363 (396)
..+++|++ .+. ++.++++..... .+.+.+++..++.++. .+.++... +-.+++++||+.+..
T Consensus 432 Pv~l~aa~~~~l~----------~~l~fvvp~a~~----~~~~~i~~~~~~~~~~-~~~ii~~~-~~~~~m~aaD~aLaa 495 (608)
T PRK01021 432 TIQVQAFLASSLA----------STHQLLVSSANP----KYDHLILEVLQQEGCL-HSHIVPSQ-FRYELMRECDCALAK 495 (608)
T ss_pred HHHHHHHHHHHhc----------cCeEEEEecCch----hhHHHHHHHHhhcCCC-CeEEecCc-chHHHHHhcCeeeec
Confidence 77777776 332 367887754321 2456666666543310 23333221 247899999999987
Q ss_pred CCCCCCCccHHHHHHHhcCCCEEEc
Q 016053 364 SQAWGECFGRITIEAMAFQLPVLVL 388 (396)
Q Consensus 364 S~~~~E~fg~~~lEAma~G~PVI~t 388 (396)
|- .+.+|++.+|+|.|..
T Consensus 496 SG-------TaTLEaAL~g~PmVV~ 513 (608)
T PRK01021 496 CG-------TIVLETALNQTPTIVT 513 (608)
T ss_pred CC-------HHHHHHHHhCCCEEEE
Confidence 74 9999999999999875
No 119
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.48 E-value=4.6e-05 Score=71.15 Aligned_cols=50 Identities=14% Similarity=0.281 Sum_probs=41.9
Q ss_pred CCcEEEecCc-CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCC
Q 016053 338 QDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHP 393 (396)
Q Consensus 338 ~~~V~~~g~~-~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~ 393 (396)
++++.+.++. +++.++|.+||++|.-+- ..++.||+++|+|+|.....|.
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~vI~~~G------~~t~~Ea~~~g~P~l~ip~~~~ 278 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAELVITHGG------FSLISEALSLGKPLIVIPDLGQ 278 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCEEEECCC------hHHHHHHHHcCCCEEEEcCCCc
Confidence 4689999887 589999999999996443 2468999999999999888764
No 120
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.41 E-value=1.8e-06 Score=82.77 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=77.1
Q ss_pred HHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCC-
Q 016053 260 VRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ- 338 (396)
Q Consensus 260 ~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~- 338 (396)
.|+.+|++++.+++++++++ .|=-+..+++..++.+.. |+.+|++..... ..++.+++.+++.|+.
T Consensus 275 ~R~~~gLp~d~vvF~~fn~~--~KI~p~~l~~W~~IL~~v-------P~S~L~L~~~~~----~~~~~l~~~~~~~Gv~~ 341 (468)
T PF13844_consen 275 TRAQYGLPEDAVVFGSFNNL--FKISPETLDLWARILKAV-------PNSRLWLLRFPA----SGEARLRRRFAAHGVDP 341 (468)
T ss_dssp ETGGGT--SSSEEEEE-S-G--GG--HHHHHHHHHHHHHS-------TTEEEEEEETST----THHHHHHHHHHHTTS-G
T ss_pred CHHHcCCCCCceEEEecCcc--ccCCHHHHHHHHHHHHhC-------CCcEEEEeeCCH----HHHHHHHHHHHHcCCCh
Confidence 58899999998877777765 777888888888887744 899998876543 2457888899999987
Q ss_pred CcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCC
Q 016053 339 DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSE 390 (396)
Q Consensus 339 ~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~ 390 (396)
++++|.+.. ++-...+..+||++-+. .-+-+.+.+||+.+|+|||+-..
T Consensus 342 ~Ri~f~~~~~~~ehl~~~~~~DI~LDT~---p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 342 DRIIFSPVAPREEHLRRYQLADICLDTF---PYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp GGEEEEE---HHHHHHHGGG-SEEE--S---SS--SHHHHHHHHHT--EEB---
T ss_pred hhEEEcCCCCHHHHHHHhhhCCEEeeCC---CCCCcHHHHHHHHcCCCEEeccC
Confidence 789999864 44455678899999874 45668999999999999998653
No 121
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=0.00032 Score=65.08 Aligned_cols=274 Identities=17% Similarity=0.185 Sum_probs=149.7
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCC-CEEEEEeccCCCCchhhhhhhhhhhhhcceE--EEEc---------
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVG-TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ--VISA--------- 139 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G-~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------- 139 (396)
|+++||++|...-+- ..-+..++.++.+.+ .+..|+....... .+. ....+...++. .+.+
T Consensus 1 m~~~Kv~~I~GTRPE---~iKmapli~~~~~~~~~~~~vi~TGQH~d-~em---~~~~le~~~i~~pdy~L~i~~~~~tl 73 (383)
T COG0381 1 MKMLKVLTIFGTRPE---AIKMAPLVKALEKDPDFELIVIHTGQHRD-YEM---LDQVLELFGIRKPDYDLNIMKPGQTL 73 (383)
T ss_pred CCceEEEEEEecCHH---HHHHhHHHHHHHhCCCCceEEEEeccccc-HHH---HHHHHHHhCCCCCCcchhccccCCCH
Confidence 567899999832111 156778888999876 8887776433221 011 11112222222 1111
Q ss_pred --------CchhhhhhccCCcEEEEcCchhhHH--HHHHHhcCCCccccceeeeeeecccc-----cCchhhhcccc--c
Q 016053 140 --------KGQETINTALKADLIVLNTAVAGKW--LDAVLKEDVPRVLPNVLWWIHEMRGH-----YFKLDYVKHLP--L 202 (396)
Q Consensus 140 --------~~~~~~~~~~~~DiV~~~~~~~~~~--~~~~~~~~~~~~~~~vv~~~h~~~~~-----~~~~~~~~~~~--~ 202 (396)
.....+....+||+|.+|+-..... ...+....+| + .|--.+. +++....+.+- .
T Consensus 74 ~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~Ip-----V---~HvEAGlRt~~~~~PEE~NR~l~~~~ 145 (383)
T COG0381 74 GEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIP-----V---GHVEAGLRTGDLYFPEEINRRLTSHL 145 (383)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCc-----e---EEEecccccCCCCCcHHHHHHHHHHh
Confidence 0113444569999999997332221 2334445554 2 3332211 23333222221 2
Q ss_pred cccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHH-cCCCCCCEEEEEEecccC
Q 016053 203 VAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRES-LGVRNEDLLFAIINSVSR 281 (396)
Q Consensus 203 ~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~-~g~~~~~~~il~vG~l~~ 281 (396)
.+..++.+...++.+. +-|.+++++.++.|.+-......... -.+....... ++.+.++++++..=|-..
T Consensus 146 S~~hfapte~ar~nLl-----~EG~~~~~IfvtGnt~iDal~~~~~~----~~~~~~~~~~~~~~~~~~~iLvT~HRreN 216 (383)
T COG0381 146 SDLHFAPTEIARKNLL-----REGVPEKRIFVTGNTVIDALLNTRDR----VLEDSKILAKGLDDKDKKYILVTAHRREN 216 (383)
T ss_pred hhhhcCChHHHHHHHH-----HcCCCccceEEeCChHHHHHHHHHhh----hccchhhHHhhhccccCcEEEEEcchhhc
Confidence 2333333333333333 56889889999998753222111000 0001112222 555555677766666554
Q ss_pred C-CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHH-HhcCCCCcEEEecCc--CCHHHHHHHc
Q 016053 282 G-KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV-MQKKIQDRVHFVNKT--LTVAPYLAAI 357 (396)
Q Consensus 282 ~-Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~-~~~~l~~~V~~~g~~--~~~~~~~~~a 357 (396)
. +++..+++++.++.++ ++++.++.--.. +..+++.. ..++-.++|+++.+. .+...++..|
T Consensus 217 ~~~~~~~i~~al~~i~~~-------~~~~~viyp~H~-------~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a 282 (383)
T COG0381 217 VGEPLEEICEALREIAEE-------YPDVIVIYPVHP-------RPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNA 282 (383)
T ss_pred ccccHHHHHHHHHHHHHh-------CCCceEEEeCCC-------ChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhc
Confidence 3 8889999999888763 367766654432 24444444 456666789999886 6788888888
Q ss_pred CEEEecCCCCCCCccHHHHHHHhcCCCEEEcCC
Q 016053 358 DVLVQNSQAWGECFGRITIEAMAFQLPVLVLSE 390 (396)
Q Consensus 358 Dv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~ 390 (396)
-+.+--| |...=||-..|+||++-+.
T Consensus 283 ~~iltDS-------GgiqEEAp~lg~Pvl~lR~ 308 (383)
T COG0381 283 FLILTDS-------GGIQEEAPSLGKPVLVLRD 308 (383)
T ss_pred eEEEecC-------CchhhhHHhcCCcEEeecc
Confidence 6666433 3455799999999998654
No 122
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=0.00034 Score=61.66 Aligned_cols=244 Identities=18% Similarity=0.186 Sum_probs=130.5
Q ss_pred cEEEEEeccCCC-CCh-HHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 75 KLVLLVSHELSL-SGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 75 ~kIl~v~~~~~~-gG~-~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
|||+|++..... |+| -.+...|++.|.++|..+..++.+.... .+.. ...++.+.-.+.- ...+..++|
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~------~~~~--~~~~f~~~~~~~~-n~ik~~k~d 71 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA------IIHK--VYEGFKVLEGRGN-NLIKEEKFD 71 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh------hhhh--hhhhccceeeecc-cccccccCC
Confidence 589999876433 444 4999999999999998888887443110 0111 1122222211111 155678999
Q ss_pred EEEEcCc-hhhHHHHHHH-hcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHHHHHhhhcccCC
Q 016053 153 LIVLNTA-VAGKWLDAVL-KEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 230 (396)
Q Consensus 153 iV~~~~~-~~~~~~~~~~-~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~ 230 (396)
+++..+. ...-.+.... ..+ .+.++. .+.....+. ..+.++ ..... ....++.-+.
T Consensus 72 ~lI~Dsygl~~dd~k~ik~e~~-----~k~l~f-Dd~~~~~~~--------d~d~iv---N~~~~-----a~~~y~~v~~ 129 (318)
T COG3980 72 LLIFDSYGLNADDFKLIKEEAG-----SKILIF-DDENAKSFK--------DNDLIV---NAILN-----ANDYYGLVPN 129 (318)
T ss_pred EEEEeccCCCHHHHHHHHHHhC-----CcEEEe-cCCCccchh--------hhHhhh---hhhhc-----chhhccccCc
Confidence 9988763 2222333333 233 223432 222111111 111111 01111 1113444444
Q ss_pred CEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEE
Q 016053 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (396)
Q Consensus 231 k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~ 310 (396)
+. -++.|.+.-...+.. ...|++.+++ +.+-+++..|. ...|| ..++.++.+.+ .++.
T Consensus 130 k~-~~~lGp~y~~lr~eF-----~~~r~~~~~r----~~r~ilI~lGG-sDpk~--lt~kvl~~L~~---------~~~n 187 (318)
T COG3980 130 KT-RYYLGPGYAPLRPEF-----YALREENTER----PKRDILITLGG-SDPKN--LTLKVLAELEQ---------KNVN 187 (318)
T ss_pred ce-EEEecCCceeccHHH-----HHhHHHHhhc----chheEEEEccC-CChhh--hHHHHHHHhhc---------cCee
Confidence 43 345576655444332 1123333332 23334445555 34454 34555555543 3444
Q ss_pred EEE-EecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCE
Q 016053 311 AVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPV 385 (396)
Q Consensus 311 l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PV 385 (396)
+.| +|++. +..+.+++.++++ +++.++-..+||++++..||..+.. -|.++.||...|+|.
T Consensus 188 l~iV~gs~~----p~l~~l~k~~~~~---~~i~~~~~~~dma~LMke~d~aI~A-------aGstlyEa~~lgvP~ 249 (318)
T COG3980 188 LHIVVGSSN----PTLKNLRKRAEKY---PNINLYIDTNDMAELMKEADLAISA-------AGSTLYEALLLGVPS 249 (318)
T ss_pred EEEEecCCC----cchhHHHHHHhhC---CCeeeEecchhHHHHHHhcchheec-------cchHHHHHHHhcCCc
Confidence 444 34332 2456667777665 6898988889999999999999852 368999999999993
No 123
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.23 E-value=0.00014 Score=65.93 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc
Q 016053 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (396)
Q Consensus 268 ~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (396)
++..+++.+|.= .-| .+|++++.+....+.+. ...-++|.|+..+. +.++.+.+.+. -.++|...-+.
T Consensus 218 E~~~Ilvs~GGG--~dG-~eLi~~~l~A~~~l~~l----~~~~~ivtGP~MP~--~~r~~l~~~A~---~~p~i~I~~f~ 285 (400)
T COG4671 218 EGFDILVSVGGG--ADG-AELIETALAAAQLLAGL----NHKWLIVTGPFMPE--AQRQKLLASAP---KRPHISIFEFR 285 (400)
T ss_pred ccceEEEecCCC--hhh-HHHHHHHHHHhhhCCCC----CcceEEEeCCCCCH--HHHHHHHHhcc---cCCCeEEEEhh
Confidence 456677777652 233 44555554443333221 22247777877633 23344444443 34689999999
Q ss_pred CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCC
Q 016053 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHP 393 (396)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~ 393 (396)
+++..++..||..|.-+-+ +++-|-+++|+|.+.-...-+
T Consensus 286 ~~~~~ll~gA~~vVSm~GY------NTvCeILs~~k~aLivPr~~p 325 (400)
T COG4671 286 NDFESLLAGARLVVSMGGY------NTVCEILSFGKPALIVPRAAP 325 (400)
T ss_pred hhHHHHHHhhheeeecccc------hhhhHHHhCCCceEEeccCCC
Confidence 9999999999999853331 788999999999887655443
No 124
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.21 E-value=1.5e-05 Score=64.47 Aligned_cols=94 Identities=21% Similarity=0.180 Sum_probs=59.3
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcC-------------ch
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-------------GQ 142 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 142 (396)
|||+++... +.+..++++.|.++||||++++..... .......++.++... ..
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~~~~---------~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l 66 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPRNDY---------EKYEIIEGIKVIRLPSPRKSPLNYIKYFRL 66 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcCCCc---------hhhhHhCCeEEEEecCCCCccHHHHHHHHH
Confidence 578887533 468899999999999999999975432 112223344444332 12
Q ss_pred hhhhhccCCcEEEEcCchhh-HHHHHHH-hcCCCccccceeeeeeec
Q 016053 143 ETINTALKADLIVLNTAVAG-KWLDAVL-KEDVPRVLPNVLWWIHEM 187 (396)
Q Consensus 143 ~~~~~~~~~DiV~~~~~~~~-~~~~~~~-~~~~~~~~~~vv~~~h~~ 187 (396)
..+.+..+||+||+|.+.+. .....+. ..+. .+++++.|+.
T Consensus 67 ~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~----~~~i~~~hg~ 109 (139)
T PF13477_consen 67 RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKN----KKVIYTVHGS 109 (139)
T ss_pred HHHhccCCCCEEEEecCChHHHHHHHHHHHcCC----CCEEEEecCC
Confidence 33445689999999997653 3332222 2221 3588889975
No 125
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.12 E-value=0.00038 Score=66.92 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=38.6
Q ss_pred CCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 337 IQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 337 l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
++++|.+.++... .+++.+||++|..+- ..++.||+++|+|+|+....+
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hgG------~~t~~Eal~~G~P~v~~p~~~ 321 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHGG------MNSTMEALFNGVPMVAVPQGA 321 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECCC------chHHHHHHHhCCCEEecCCcc
Confidence 4578999998754 589999999996333 357899999999999976543
No 126
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.04 E-value=0.00036 Score=66.56 Aligned_cols=265 Identities=14% Similarity=0.200 Sum_probs=129.0
Q ss_pred cccEEEEEecc-CCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCC
Q 016053 73 KSKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (396)
Q Consensus 73 ~~~kIl~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (396)
++++|++.+.. ...++-.+.+.+.+.. ...++++.+++.... . .....+..++.....+.+....+.
T Consensus 12 ~~~~Ivf~~~~g~~~~dN~~~l~~~l~~-~~~~~~~~~~~~~~~---------~--~~~~~~~~~v~~~s~~~~~~~~~A 79 (369)
T PF04464_consen 12 KKKKIVFESESGNKFSDNPKALFEYLIK-NYPDYKIYWIINKKS---------P--ELKPKGIKVVKFGSLKHIYYLARA 79 (369)
T ss_dssp EEEEEEEEBTTTTBS-HHHHHHHHHHHH-H-TTSEEEEEESSGG---------G------SS-EEEETTSHHHHHHHHHE
T ss_pred cCCEEEEEECCCCCCCCCHHHHHHHHHh-hCCCcEEEEEEcCch---------H--hhccCCceEEeecHHHHHHHHHhC
Confidence 44578888753 3335545666665552 346689988885432 1 334557778877777777777788
Q ss_pred cEEEEcCchhhHHHHHHHhcCCCccccceeeeeeecccccCc----------hhhhccccccccceeeccccHHHHHHHH
Q 016053 152 DLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFK----------LDYVKHLPLVAGAMIDSHVTAEYWKNRT 221 (396)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~----------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 221 (396)
+++++++........ .... ..+++..-|+..-.... ..........+.+++.|....+.+.+
T Consensus 80 k~~i~~~~~~~~~~~-~~~~-----~~~~i~lwHG~~~K~~g~~~~~~~~~~~~~~~~~~~~d~~~~~s~~~~~~~~~-- 151 (369)
T PF04464_consen 80 KYIISDSYFPDLIYF-KKRK-----NQKYIQLWHGIPLKKIGYDSPDNKNYRKNYKRNYRNYDYFIVSSEFEKEIFKK-- 151 (369)
T ss_dssp EEEEESS---T--TS----T-----TSEEEE--SS--SB--GGG-S---TS-HHHHHHHTT-SEEEESSHHHHHHHHH--
T ss_pred cEEEECCCCCccccc-ccCC-----CcEEEEecCCCcccccchhccccccchhhhhhhccCCcEEEECCHHHHHHHHH--
Confidence 999988543331100 0111 14466666765200000 01223445677777777766655443
Q ss_pred HhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCH------HHHHHHHHHH
Q 016053 222 RERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQ------DLFLHSFYES 295 (396)
Q Consensus 222 ~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~------~~li~a~~~l 295 (396)
.++.+.+++. ..|..- ++...+.. ...++.+++.++++.++.+|+|+=........ ...++ +..+
T Consensus 152 --~f~~~~~~i~--~~G~PR--~D~l~~~~--~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~-~~~l 222 (369)
T PF04464_consen 152 --AFGYPEDKIL--VTGYPR--NDYLFNKS--KENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLD-FEKL 222 (369)
T ss_dssp --HTT--GGGEE--ES--GG--GHHHHHST--T-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT--HHHH
T ss_pred --HhccCcceEE--EeCCCe--EhHHhccC--HHHHHHHHHHhccCCCCcEEEEeeccccccccccccccccccC-HHHH
Confidence 6677766544 456432 22111111 11156789999999999999999654332221 22222 2222
Q ss_pred HHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHh-cCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHH
Q 016053 296 LELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRI 374 (396)
Q Consensus 296 ~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~ 374 (396)
. .+.+ .++.+++-.-- ........ ....++|.++..-+++.+++..||++|- - ++-+
T Consensus 223 ~-~~~~-----~~~~li~k~Hp---------~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~~aDiLIT--D-----ySSi 280 (369)
T PF04464_consen 223 N-FLLK-----NNYVLIIKPHP---------NMKKKFKDFKEDNSNIIFVSDNEDIYDLLAAADILIT--D-----YSSI 280 (369)
T ss_dssp H-HHHT-----TTEEEEE--SH---------HHHTT----TT-TTTEEE-TT-S-HHHHHHT-SEEEE--S-----S-TH
T ss_pred H-HHhC-----CCcEEEEEeCc---------hhhhchhhhhccCCcEEECCCCCCHHHHHHhcCEEEE--e-----chhH
Confidence 1 1211 68888877752 11222211 3344789888887899999999999993 2 3467
Q ss_pred HHHHHhcCCCEEEc
Q 016053 375 TIEAMAFQLPVLVL 388 (396)
Q Consensus 375 ~lEAma~G~PVI~t 388 (396)
+.|++.+++|||-.
T Consensus 281 ~fD~~~l~KPiify 294 (369)
T PF04464_consen 281 IFDFLLLNKPIIFY 294 (369)
T ss_dssp HHHHGGGT--EEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 89999999999954
No 127
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.99 E-value=0.0039 Score=57.04 Aligned_cols=112 Identities=11% Similarity=0.035 Sum_probs=83.2
Q ss_pred CCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEec-C
Q 016053 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN-K 346 (396)
Q Consensus 268 ~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g-~ 346 (396)
.++..|+.-.+-++.-++.++++++++.. ..+.++++-=+-+.++.+|.+++.+..+++--.+++..+- +
T Consensus 183 ~~~ltILvGNSgd~sNnHieaL~~L~~~~---------~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~ 253 (360)
T PF07429_consen 183 KGKLTILVGNSGDPSNNHIEALEALKQQF---------GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEF 253 (360)
T ss_pred CCceEEEEcCCCCCCccHHHHHHHHHHhc---------CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhh
Confidence 45677775556677888988888887632 2578877754444344568899999999875556787765 3
Q ss_pred c--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCC
Q 016053 347 T--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSE 390 (396)
Q Consensus 347 ~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~ 390 (396)
. +|..++++.||+.+++.. +-++.|+. .=.+.+|+||+-+..
T Consensus 254 mpf~eYl~lL~~cDl~if~~~-RQQgiGnI-~lLl~~G~~v~L~~~ 297 (360)
T PF07429_consen 254 MPFDEYLALLSRCDLGIFNHN-RQQGIGNI-CLLLQLGKKVFLSRD 297 (360)
T ss_pred CCHHHHHHHHHhCCEEEEeec-hhhhHhHH-HHHHHcCCeEEEecC
Confidence 3 889999999999999877 36788875 558999999998754
No 128
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.82 E-value=0.00085 Score=62.83 Aligned_cols=247 Identities=15% Similarity=0.056 Sum_probs=123.2
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcce-EEEE-cCch-----hhhhh
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGV-QVIS-AKGQ-----ETINT 147 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-----~~~~~ 147 (396)
|||.++..+. .|..+-..|+++|++ ++.++.-.++.- ........ .+.--|+ +++. .+.. .....
T Consensus 2 ~~i~i~aGE~---SGD~~ga~l~~~l~~---~~~~~G~GG~~m-~~~~~~~~-~lsv~G~~evl~~~~~~~~~~~~~~~~ 73 (347)
T PRK14089 2 MKILVSALEP---SANLHLKELLKNLPK---DYELIGIFDKSL-GNPLYDSR-EFSIMGFVDVLPKLFFAKKAIKEMVEL 73 (347)
T ss_pred cEEEEEeccc---cHHHHHHHHHHHHhc---CCEEEEEechHH-HHhcCChH-HhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888544 235788889999987 455544333210 00000000 0000010 0000 0000 01112
Q ss_pred ccCCcEEEEcC-chhhHHHH-HHHhcCCCccccceeeeeeecccccCchh-hhccccccccceeeccccHHHHHHHHHhh
Q 016053 148 ALKADLIVLNT-AVAGKWLD-AVLKEDVPRVLPNVLWWIHEMRGHYFKLD-YVKHLPLVAGAMIDSHVTAEYWKNRTRER 224 (396)
Q Consensus 148 ~~~~DiV~~~~-~~~~~~~~-~~~~~~~~~~~~~vv~~~h~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 224 (396)
.++||+++.-+ |.....+. .+++.+ |. .|++|++--.. +.+... .....+.+|...+...+-.++
T Consensus 74 ~~~pd~~i~iD~p~Fnl~lak~~k~~~-~~--i~viyyi~Pqv-WAWr~~R~~~i~k~~d~vl~ifPFE~~~-------- 141 (347)
T PRK14089 74 AKQADKVLLMDSSSFNIPLAKKIKKAY-PK--KEIIYYILPQV-WAWKKGRAKILEKYCDFLASILPFEVQF-------- 141 (347)
T ss_pred hcCCCEEEEeCCCCCCHHHHHHHHhcC-CC--CCEEEEECccc-eeeCcchHHHHHHHHhhhhccCCCCHHH--------
Confidence 37999998765 44444333 444441 11 23554443221 222322 233334566666555544333
Q ss_pred hcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccC--CCCHHHHHHHHHHHHHHHHhh
Q 016053 225 LRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEK 302 (396)
Q Consensus 225 ~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~--~Kg~~~li~a~~~l~~~~~~~ 302 (396)
||. +..++.|++-.. .... +.. ++++..+.+.-|+-.. .+.+..+++++.++.+
T Consensus 142 yg~---~~~~VGhPl~d~-~~~~-------------~~~--~~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~----- 197 (347)
T PRK14089 142 YQS---KATYVGHPLLDE-IKEF-------------KKD--LDKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEG----- 197 (347)
T ss_pred hCC---CCEEECCcHHHh-hhhh-------------hhh--cCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhh-----
Confidence 232 355666664221 1100 111 2334455555565321 2445556677666543
Q ss_pred ccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcC
Q 016053 303 KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ 382 (396)
Q Consensus 303 ~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G 382 (396)
...++++.|... . +.+++...+. ..+.+.+ +..+++++||+.+..|- .+.+|++.+|
T Consensus 198 ----~~~~~~i~~a~~-----~-~~i~~~~~~~---~~~~~~~---~~~~~m~~aDlal~~SG-------T~TLE~al~g 254 (347)
T PRK14089 198 ----KEKILVVPSFFK-----G-KDLKEIYGDI---SEFEISY---DTHKALLEAEFAFICSG-------TATLEAALIG 254 (347)
T ss_pred ----cCcEEEEeCCCc-----H-HHHHHHHhcC---CCcEEec---cHHHHHHhhhHHHhcCc-------HHHHHHHHhC
Confidence 236788887642 2 5555555432 2344553 67889999999997664 7778999999
Q ss_pred CCEEEc
Q 016053 383 LPVLVL 388 (396)
Q Consensus 383 ~PVI~t 388 (396)
+|.|..
T Consensus 255 ~P~Vv~ 260 (347)
T PRK14089 255 TPFVLA 260 (347)
T ss_pred CCEEEE
Confidence 999874
No 129
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.75 E-value=0.00081 Score=63.30 Aligned_cols=210 Identities=14% Similarity=0.140 Sum_probs=98.1
Q ss_pred hhhccCCcEEEEcCchhh--HHHHHHHhcCCCccccceeeeeee-cccc-c---Cchhhhcc-cc-ccccceeeccccHH
Q 016053 145 INTALKADLIVLNTAVAG--KWLDAVLKEDVPRVLPNVLWWIHE-MRGH-Y---FKLDYVKH-LP-LVAGAMIDSHVTAE 215 (396)
Q Consensus 145 ~~~~~~~DiV~~~~~~~~--~~~~~~~~~~~~~~~~~vv~~~h~-~~~~-~---~~~~~~~~-~~-~~~~~~~~s~~~~~ 215 (396)
+....+||+|++++-... .....+...++| ++ +++. .++. . ......+. .. ..+..++.+....+
T Consensus 62 ~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ip-----v~-HieaGlRs~d~~~g~~de~~R~~i~~la~lhf~~t~~~~~ 135 (346)
T PF02350_consen 62 VLEREKPDAVLVLGDRNEALAAALAAFYLNIP-----VA-HIEAGLRSGDRTEGMPDEINRHAIDKLAHLHFAPTEEARE 135 (346)
T ss_dssp HHHHHT-SEEEEETTSHHHHHHHHHHHHTT-E-----EE-EES-----S-TTSSTTHHHHHHHHHHH-SEEEESSHHHHH
T ss_pred HHHhcCCCEEEEEcCCchHHHHHHHHHHhCCC-----EE-EecCCCCccccCCCCchhhhhhhhhhhhhhhccCCHHHHH
Confidence 345689999999883222 222334455554 22 2332 1111 1 11122222 22 23333333333333
Q ss_pred HHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHH-HHHc-CCCCCCEEEEEEecccCC---CCHHHHHH
Q 016053 216 YWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHV-RESL-GVRNEDLLFAIINSVSRG---KGQDLFLH 290 (396)
Q Consensus 216 ~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~-r~~~-g~~~~~~~il~vG~l~~~---Kg~~~li~ 290 (396)
++. +.|.++.++.++.|..-.......+. ..+.. ...+ ...+++++++..=+.... .....+.+
T Consensus 136 ----~L~-~~G~~~~rI~~vG~~~~D~l~~~~~~------~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~ 204 (346)
T PF02350_consen 136 ----RLL-QEGEPPERIFVVGNPGIDALLQNKEE------IEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILE 204 (346)
T ss_dssp ----HHH-HTT--GGGEEE---HHHHHHHHHHHT------TCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHH
T ss_pred ----HHH-hcCCCCCeEEEEChHHHHHHHHhHHH------HhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHH
Confidence 333 56888899999986532222111100 00011 1111 114556666555443332 33456666
Q ss_pred HHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCC
Q 016053 291 SFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWG 368 (396)
Q Consensus 291 a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~ 368 (396)
+++.+.+. .++.+++..... +.....+.+...++ ++++++... .+...+++.|+++|--|
T Consensus 205 ~l~~L~~~--------~~~~vi~~~hn~---p~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdS---- 266 (346)
T PF02350_consen 205 ALKALAER--------QNVPVIFPLHNN---PRGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDS---- 266 (346)
T ss_dssp HHHHHHHH--------TTEEEEEE--S----HHHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESS----
T ss_pred HHHHHHhc--------CCCcEEEEecCC---chHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcC----
Confidence 66665542 578888888743 12456666666655 389999875 78999999999999533
Q ss_pred CCccHHHH-HHHhcCCCEEEcCCCCC
Q 016053 369 ECFGRITI-EAMAFQLPVLVLSELHP 393 (396)
Q Consensus 369 E~fg~~~l-EAma~G~PVI~t~~gG~ 393 (396)
| .+. ||..+|+|+|.-+.-|.
T Consensus 267 ---s-GI~eEa~~lg~P~v~iR~~ge 288 (346)
T PF02350_consen 267 ---S-GIQEEAPSLGKPVVNIRDSGE 288 (346)
T ss_dssp ---H-HHHHHGGGGT--EEECSSS-S
T ss_pred ---c-cHHHHHHHhCCeEEEecCCCC
Confidence 2 355 99999999999865554
No 130
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.75 E-value=0.0084 Score=53.85 Aligned_cols=237 Identities=12% Similarity=0.094 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch-------------------hhhhhccCC
Q 016053 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------------------ETINTALKA 151 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 151 (396)
.++.++...|+++||+|.+-+.+... +.+.+.-.|++....... ..+....+|
T Consensus 14 hfFk~lI~elekkG~ev~iT~rd~~~--------v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~kp 85 (346)
T COG1817 14 HFFKNLIWELEKKGHEVLITCRDFGV--------VTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFKP 85 (346)
T ss_pred hHHHHHHHHHHhCCeEEEEEEeecCc--------HHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 78999999999999999999865543 555566667666444322 123345899
Q ss_pred cEEEE-cCchhhHHHHHHHhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHHHHHhhhcccCC
Q 016053 152 DLIVL-NTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMP 230 (396)
Q Consensus 152 DiV~~-~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~ 230 (396)
|+.+. |++... ..+...++| .+....+-+... .....++.++.++.....-...+. .+|-++.
T Consensus 86 dv~i~~~s~~l~---rvafgLg~p-----sIi~~D~ehA~~---qnkl~~Pla~~ii~P~~~~~~~~~-----~~G~~p~ 149 (346)
T COG1817 86 DVAIGKHSPELP---RVAFGLGIP-----SIIFVDNEHAEA---QNKLTLPLADVIITPEAIDEEELL-----DFGADPN 149 (346)
T ss_pred ceEeecCCcchh---hHHhhcCCc-----eEEecCChhHHH---HhhcchhhhhheecccccchHHHH-----HhCCCcc
Confidence 99876 333222 233444544 333333322111 123334455556655555444333 5576655
Q ss_pred CEEEEecCCcc----chhhhhhhhHHHHHhHHHHHHHcCCCCC-CEEEEEEec-----ccCCCCHHHHHHHHHHHHHHHH
Q 016053 231 DTYVVHLGNSK----ELMEVAEDNVAKRVLREHVRESLGVRNE-DLLFAIINS-----VSRGKGQDLFLHSFYESLELIK 300 (396)
Q Consensus 231 k~~vI~ngid~----~~~~~~~~~~~~~~~~~~~r~~~g~~~~-~~~il~vG~-----l~~~Kg~~~li~a~~~l~~~~~ 300 (396)
++ +=+||+-. ..|.|. .++-+++|+.++ .++++=.-. ....++.+.+.++++.+.+
T Consensus 150 ~i-~~~~giae~~~v~~f~pd----------~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k--- 215 (346)
T COG1817 150 KI-SGYNGIAELANVYGFVPD----------PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKK--- 215 (346)
T ss_pred ce-ecccceeEEeecccCCCC----------HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHh---
Confidence 43 34456421 223332 457788999875 444442222 1234555556666665532
Q ss_pred hhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHh
Q 016053 301 EKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA 380 (396)
Q Consensus 301 ~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma 380 (396)
.-.+++-.. ++.++..+... +++.--..-|--.++--|++++-.+ |...-||..
T Consensus 216 --------~giV~ipr~--------~~~~eife~~~---n~i~pk~~vD~l~Llyya~lvig~g-------gTMarEaAl 269 (346)
T COG1817 216 --------YGIVLIPRE--------KEQAEIFEGYR---NIIIPKKAVDTLSLLYYATLVIGAG-------GTMAREAAL 269 (346)
T ss_pred --------CcEEEecCc--------hhHHHHHhhhc---cccCCcccccHHHHHhhhheeecCC-------chHHHHHHH
Confidence 224444432 22333444321 2222222234445777888888322 355689999
Q ss_pred cCCCEEEcCCC
Q 016053 381 FQLPVLVLSEL 391 (396)
Q Consensus 381 ~G~PVI~t~~g 391 (396)
.|+|.|++.-|
T Consensus 270 LGtpaIs~~pG 280 (346)
T COG1817 270 LGTPAISCYPG 280 (346)
T ss_pred hCCceEEecCC
Confidence 99999999843
No 131
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.72 E-value=0.00016 Score=64.66 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=31.1
Q ss_pred EEEEEeccCCC----CChHHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 76 LVLLVSHELSL----SGGPLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 76 kIl~v~~~~~~----gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
|||+++.+..+ ||-..++..|.++|+++|++|.|+++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 69999987444 8888999999999999999999999754
No 132
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.62 E-value=0.0044 Score=55.92 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=86.6
Q ss_pred CCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc
Q 016053 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (396)
Q Consensus 268 ~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (396)
.+..+|+.-.+-++..++.++++++.+.. ..++++++.=+-+.++.+|.+++++..+++--++++..+-..
T Consensus 144 ~~~~tIlvGNSgd~SN~Hie~L~~l~~~~---------~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~ 214 (322)
T PRK02797 144 AGKMTILVGNSGDRSNRHIEALRALHQQF---------GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEK 214 (322)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHh---------CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhh
Confidence 34567765556677888999998887753 268998887766666778999999999998765788887753
Q ss_pred ---CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 348 ---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 348 ---~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
+|..++++.||+.++.-. +-+|+|+. .=.+.+|+||+-+.
T Consensus 215 l~f~eYl~lL~~~Dl~~f~~~-RQQgiGnl-~lLi~~G~~v~l~r 257 (322)
T PRK02797 215 LPFDDYLALLRQCDLGYFIFA-RQQGIGTL-CLLIQLGKPVVLSR 257 (322)
T ss_pred CCHHHHHHHHHhCCEEEEeec-hhhHHhHH-HHHHHCCCcEEEec
Confidence 788999999999888655 37788876 44789999998775
No 133
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.47 E-value=0.074 Score=51.45 Aligned_cols=287 Identities=13% Similarity=0.085 Sum_probs=135.5
Q ss_pred cEEEEEecc-CCCCChHHHHHHHHHHHHhCC--CEEEEEeccCCCCchhhhhh-------h---------------hhhh
Q 016053 75 KLVLLVSHE-LSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYS-------L---------------EHKM 129 (396)
Q Consensus 75 ~kIl~v~~~-~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~-------~---------------~~~~ 129 (396)
|||+++..+ ....|-+-.+..+++.|++.. .+++|++..+.......... + ....
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 80 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVL 80 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHH
Confidence 589988765 445888999999999999965 78888884433211000000 0 0000
Q ss_pred -------------hhcceEE-EEc--CchhhhhhccCCcEEEEcCc---------hhhHHHHHHHhcCCCccccceeeee
Q 016053 130 -------------WDRGVQV-ISA--KGQETINTALKADLIVLNTA---------VAGKWLDAVLKEDVPRVLPNVLWWI 184 (396)
Q Consensus 130 -------------~~~~~~~-~~~--~~~~~~~~~~~~DiV~~~~~---------~~~~~~~~~~~~~~~~~~~~vv~~~ 184 (396)
..+|... +.. .....+....+.|+++.-+. ....+...+...+ +|++.+-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~g-----kpv~l~g 155 (426)
T PRK10017 81 RRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAK-----KPLYMIG 155 (426)
T ss_pred HhhhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcC-----CCEEEEC
Confidence 0000000 000 00011223467899986551 1112222333334 4466666
Q ss_pred eecccccCchhhh----ccccccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHH
Q 016053 185 HEMRGHYFKLDYV----KHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHV 260 (396)
Q Consensus 185 h~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~ 260 (396)
+.. +.+...... ..+++++.+. .++....+..+..|++.+++.+.+ |+.+.-+....... ....+
T Consensus 156 qsi-GPf~~~~~r~l~r~vl~~~~~It-----vRD~~S~~~Lk~lGv~~~~v~~~a---DpAF~L~~~~~~~~--~~~~~ 224 (426)
T PRK10017 156 HSV-GPFQDEQFNQLANYVFGHCDALI-----LRESVSLDLMKRSNITTAKVEHGV---DTAWLVDHHTEDFT--ASYAV 224 (426)
T ss_pred CcC-CCcCCHHHHHHHHHHHhcCCEEE-----EccHHHHHHHHHhCCCccceEEec---ChhhhCCccccccc--cchhh
Confidence 655 333222222 2223333322 333333333346788877777655 33322111000000 00011
Q ss_pred HHHcCCCCCCEEEEEE-ecccCC-C----CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEec--CCCc-cchHHHHHHHH
Q 016053 261 RESLGVRNEDLLFAII-NSVSRG-K----GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS--DMNA-QTKFESELRNY 331 (396)
Q Consensus 261 r~~~g~~~~~~~il~v-G~l~~~-K----g~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~--g~~~-~~~~~~~l~~~ 331 (396)
...++...++..|++. ..+.+. | ..+...+.++++.+.+.+. +.+++++-. +.+. .+++....++.
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~-----g~~Vv~lp~~~~~~~~~~dD~~~~~~l 299 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDE-----GYQVIALSTCTGIDSYNKDDRMVALNL 299 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHC-----CCeEEEEecccCccCCCCchHHHHHHH
Confidence 1222222233344443 333211 2 2244556666655555442 444444432 1110 12344445555
Q ss_pred HHhcCCCCcEEEec-C--cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 332 VMQKKIQDRVHFVN-K--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 332 ~~~~~l~~~V~~~g-~--~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
.+.++-+.+++++. . ..++..+++.||++|-.=. -.++=|++.|+|+|+-.
T Consensus 300 ~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl-------Ha~I~a~~~gvP~i~i~ 353 (426)
T PRK10017 300 RQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRL-------HSAIISMNFGTPAIAIN 353 (426)
T ss_pred HHhcccccceeEecCCCChHHHHHHHhhCCEEEEecc-------hHHHHHHHcCCCEEEee
Confidence 55554444455433 2 2467799999999886444 46788999999999754
No 134
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.92 E-value=0.032 Score=53.72 Aligned_cols=93 Identities=15% Similarity=0.232 Sum_probs=59.8
Q ss_pred CCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcC
Q 016053 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (396)
Q Consensus 269 ~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (396)
.+++.+..|..... ..+++.+-.... + -+.++++...+. + . ...++++|+...++..
T Consensus 237 ~~~vyvslGt~~~~---~~l~~~~~~a~~---~-----l~~~vi~~~~~~-~-----~------~~~~~p~n~~v~~~~p 293 (406)
T COG1819 237 RPIVYVSLGTVGNA---VELLAIVLEALA---D-----LDVRVIVSLGGA-R-----D------TLVNVPDNVIVADYVP 293 (406)
T ss_pred CCeEEEEcCCcccH---HHHHHHHHHHHh---c-----CCcEEEEecccc-c-----c------ccccCCCceEEecCCC
Confidence 44555555665444 333333333222 1 577888877541 0 0 1225678898888874
Q ss_pred CHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
..+++..||++|...- -.++.||+.+|+|+|+-..+
T Consensus 294 -~~~~l~~ad~vI~hGG------~gtt~eaL~~gvP~vv~P~~ 329 (406)
T COG1819 294 -QLELLPRADAVIHHGG------AGTTSEALYAGVPLVVIPDG 329 (406)
T ss_pred -HHHHhhhcCEEEecCC------cchHHHHHHcCCCEEEecCC
Confidence 3469999999996433 46779999999999987665
No 135
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.83 E-value=0.4 Score=44.32 Aligned_cols=249 Identities=15% Similarity=0.042 Sum_probs=130.7
Q ss_pred ChHHHHHHHHHHHHh-CCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcEEEEcCchhhHHHH
Q 016053 88 GGPLLLMELAFLLRG-VGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAGKWLD 166 (396)
Q Consensus 88 G~~~~~~~l~~~L~~-~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~~~~~ 166 (396)
|.+....-|+++|.. .++++..+....+..+.+.. +..... .+.. ..........||+|+...........
T Consensus 2 Gh~~Q~~GLa~aL~~~~~~~~~~v~~~~~~~~lp~~--~~~~~~-----~~~~-~~~~~~~~~~pdLiIsaGr~t~~~~~ 73 (311)
T PF06258_consen 2 GHENQSLGLAEALGRLTPYEIKRVDVRRPWRWLPRL--LPAPLR-----ALLK-PFSPALEPPWPDLIISAGRRTAPAAL 73 (311)
T ss_pred chHHHHHHHHHHhcCccCcceeEeccccchhhcccc--ccchHH-----Hhhh-cccccccCCCCcEEEECCCchHHHHH
Confidence 677888999999987 37888877744321100000 000000 0000 01111223679999999865555444
Q ss_pred HHHhcCCCccccceeeeeeecccccCchhhhccccccccceeeccccHHHHHHHHHhhhcc-cCCCEEE---EecCCccc
Q 016053 167 AVLKEDVPRVLPNVLWWIHEMRGHYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRI-KMPDTYV---VHLGNSKE 242 (396)
Q Consensus 167 ~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~-~~~k~~v---I~ngid~~ 242 (396)
.+.+.. . . -...+|.+..... ...+|.+++..+. +. ..+++.. .+|.++.+
T Consensus 74 ~l~r~~-g---g-~~~~V~i~~P~~~-------~~~FDlvi~p~HD-------------~~~~~~Nvl~t~ga~~~i~~~ 128 (311)
T PF06258_consen 74 ALRRAS-G---G-RTKTVQIMDPRLP-------PRPFDLVIVPEHD-------------RLPRGPNVLPTLGAPNRITPE 128 (311)
T ss_pred HHHHHc-C---C-CceEEEEcCCCCC-------ccccCEEEECccc-------------CcCCCCceEecccCCCcCCHH
Confidence 444421 0 0 1113343321111 2355555655544 12 1222322 23555544
Q ss_pred hhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCC--CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc
Q 016053 243 LMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRG--KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA 320 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~--Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~ 320 (396)
... ..+..+..+++-.+...+.+.+|.-+.. =+.+..-+.+.++.+..++ ....+.|..+--..
T Consensus 129 ~l~---------~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~vttSRRTp 194 (311)
T PF06258_consen 129 RLA---------EAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAA-----YGGSLLVTTSRRTP 194 (311)
T ss_pred HHH---------HHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHh-----CCCeEEEEcCCCCc
Confidence 332 2245555666655666677778764433 2334333444444444433 34788888875322
Q ss_pred cchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 321 QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 321 ~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
.+..+.+++..+ -.+.+.+.... .-+..+|+.||.++.+.- .-..+.||.+.|+||......+
T Consensus 195 -~~~~~~L~~~~~---~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D-----SvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 195 -PEAEAALRELLK---DNPGVYIWDGTGENPYLGFLAAADAIVVTED-----SVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred -HHHHHHHHHhhc---CCCceEEecCCCCCcHHHHHHhCCEEEEcCc-----cHHHHHHHHHcCCCEEEecCCC
Confidence 113333444443 33566455433 348899999999998644 2344689999999999988876
No 136
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.016 Score=54.50 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=40.8
Q ss_pred CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
-|..++.+.|++.|+||+ +|++|.+..|.-.+|+|-|+|+..|
T Consensus 492 lDYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSvtTNlSG 534 (692)
T KOG3742|consen 492 LDYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSVTTNLSG 534 (692)
T ss_pred CCHHHHhccccccccccc--cCCCCCCchheEEeccccccccccc
Confidence 478899999999999999 9999999999999999999999987
No 137
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.78 E-value=0.29 Score=45.95 Aligned_cols=101 Identities=16% Similarity=0.105 Sum_probs=69.8
Q ss_pred CCEEEEEEe-cccCCCCHH--HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEec
Q 016053 269 EDLLFAIIN-SVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (396)
Q Consensus 269 ~~~~il~vG-~l~~~Kg~~--~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (396)
...+++..| +-...|++. .+.+.++.+.+ ...+++++|+.. +.+..+++...++ +.+.+.|
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~---------~~~~Vvl~g~~~-----e~e~~~~i~~~~~--~~~~l~~ 238 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIA---------KGYQVVLFGGPD-----EEERAEEIAKGLP--NAVILAG 238 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHH---------CCCEEEEecChH-----HHHHHHHHHHhcC--CccccCC
Confidence 467777788 665777765 45555554443 348899999762 5666666666554 2233777
Q ss_pred Cc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
.. +++..+++.||++|-+.. ..+-=|.|.|+|+|+--...
T Consensus 239 k~sL~e~~~li~~a~l~I~~DS-------g~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 239 KTSLEELAALIAGADLVIGNDS-------GPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred CCCHHHHHHHHhcCCEEEccCC-------hHHHHHHHcCCCEEEEECCC
Confidence 64 899999999999997655 34566889999999865443
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.71 E-value=0.0012 Score=49.06 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=29.0
Q ss_pred EEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCC
Q 016053 359 VLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHP 393 (396)
Q Consensus 359 v~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~ 393 (396)
+.+.|+. .++++..++|+||||+|||+++.++.
T Consensus 1 i~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~ 33 (92)
T PF13524_consen 1 INLNPSR--SDGPNMRIFEAMACGTPVISDDSPGL 33 (92)
T ss_pred CEeeCCC--CCCCchHHHHHHHCCCeEEECChHHH
Confidence 4677888 89999999999999999999987653
No 139
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.48 E-value=0.0051 Score=51.43 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=37.6
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
.+|.+.++.+++.++++.||++|. -+-+.++.|++++|+|.|.-...+
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvIs------~aG~~Ti~E~l~~g~P~I~ip~~~ 102 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVIS------HAGAGTIAEALALGKPAIVIPLPG 102 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEEE------CS-CHHHHHHHHCT--EEEE--TT
T ss_pred CcEEEEechhhHHHHHHHcCEEEe------CCCccHHHHHHHcCCCeeccCCCC
Confidence 689999999999999999999984 344588999999999998876655
No 140
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=96.37 E-value=0.81 Score=42.09 Aligned_cols=87 Identities=13% Similarity=-0.036 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecC
Q 016053 285 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (396)
Q Consensus 285 ~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS 364 (396)
++.+.+++..+.++ .+.+++++.-..+. +.+..++...++.-+.++......+++..+++.||++|-..
T Consensus 190 ~~~l~~~l~~l~~~--------~g~~v~~i~~~~~~---D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~R 258 (298)
T TIGR03609 190 LLRLLRALDRLQRD--------TGAFVLFLPFQQPQ---DLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMR 258 (298)
T ss_pred HHHHHHHHHHHHHh--------hCCeEEEEeCCcch---hHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEec
Confidence 44555555554331 25556555533222 34444445444433334432222368888999999888765
Q ss_pred CCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 365 QAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 365 ~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
. -.++=|+.+|+|+|+-.
T Consensus 259 l-------H~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 259 L-------HALILAAAAGVPFVALS 276 (298)
T ss_pred h-------HHHHHHHHcCCCEEEee
Confidence 5 56889999999999763
No 141
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.07 E-value=0.097 Score=49.10 Aligned_cols=111 Identities=12% Similarity=0.103 Sum_probs=69.8
Q ss_pred HHHHHHHcCCCC-CCEEEEEEecc-cCCCCHH--HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHH
Q 016053 257 REHVRESLGVRN-EDLLFAIINSV-SRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYV 332 (396)
Q Consensus 257 ~~~~r~~~g~~~-~~~~il~vG~l-~~~Kg~~--~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~ 332 (396)
.+.+...++++. +.++++..|.- .+.|.+. .+.+.++.+.+ .+.++++.|+.. +++..++..
T Consensus 161 ~~~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~---------~~~~ivl~G~~~-----e~~~~~~i~ 226 (334)
T TIGR02195 161 QAAALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID---------QGYQVVLFGSAK-----DHPAGNEIE 226 (334)
T ss_pred HHHHHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH---------CCCEEEEEEChh-----hHHHHHHHH
Confidence 344566677654 45666666653 4677755 55555555432 357888888653 334444444
Q ss_pred HhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 333 MQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 333 ~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
+..+ ...+.+.|.. .++..+++.||++|-+-. ..+-=|.|.|+|+|+--
T Consensus 227 ~~~~-~~~~~l~g~~sL~el~ali~~a~l~I~~DS-------Gp~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 227 ALLP-GELRNLAGETSLDEAVDLIALAKAVVTNDS-------GLMHVAAALNRPLVALY 277 (334)
T ss_pred HhCC-cccccCCCCCCHHHHHHHHHhCCEEEeeCC-------HHHHHHHHcCCCEEEEE
Confidence 4332 1224466753 789999999999997544 34556789999999743
No 142
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.73 E-value=0.14 Score=48.34 Aligned_cols=107 Identities=12% Similarity=0.055 Sum_probs=66.6
Q ss_pred cCCCCCCEEEEEEecccCCCCHH--HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcE
Q 016053 264 LGVRNEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRV 341 (396)
Q Consensus 264 ~g~~~~~~~il~vG~l~~~Kg~~--~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V 341 (396)
.+. ++.++++..|.-.+.|.+. .+.+.++.+.+ .++++++.|+..+. +.+..++..+.......+
T Consensus 179 ~~~-~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~---------~~~~vvl~ggp~e~---e~~~~~~i~~~~~~~~~~ 245 (352)
T PRK10422 179 LGV-TQNYVVIQPTARQIFKCWDNDKFSAVIDALQA---------RGYEVVLTSGPDKD---DLACVNEIAQGCQTPPVT 245 (352)
T ss_pred cCC-CCCeEEEecCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEcCCChH---HHHHHHHHHHhcCCCccc
Confidence 344 3567777888766778765 45555554432 36788888753211 222234444332222345
Q ss_pred EEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCC
Q 016053 342 HFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSE 390 (396)
Q Consensus 342 ~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~ 390 (396)
.+.|.. .++..+++.||++|-.-. ..+-=|.|+|+|+|+-=.
T Consensus 246 ~l~g~~sL~el~ali~~a~l~v~nDS-------Gp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 246 ALAGKTTFPELGALIDHAQLFIGVDS-------APAHIAAAVNTPLICLFG 289 (352)
T ss_pred cccCCCCHHHHHHHHHhCCEEEecCC-------HHHHHHHHcCCCEEEEEC
Confidence 677764 789999999999996444 345567789999997543
No 143
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=95.67 E-value=0.19 Score=45.58 Aligned_cols=104 Identities=16% Similarity=0.187 Sum_probs=64.3
Q ss_pred CCCEEEEEEecccCC-------CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCc
Q 016053 268 NEDLLFAIINSVSRG-------KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (396)
Q Consensus 268 ~~~~~il~vG~l~~~-------Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (396)
.++..|++....... .....+++.+..+.+ +.|+++++|-=--........ +...+..-..+
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~-------~~p~~~lvvK~HP~~~~~~~~----~~~~~~~~~~~ 183 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAK-------ENPDAKLVVKPHPDERGGNKY----SYLEELPNLPN 183 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHH-------HCCCCEEEEEECchhhCCCCh----hHhhhhhcCCC
Confidence 455566677766543 245556666666544 237788776543210000011 22222211245
Q ss_pred EEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
+.++...-++.+++..||.++--+. .+-+||+.+|+||++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~VvtinS-------tvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDAVVTINS-------TVGLEALLHGKPVIVFG 225 (269)
T ss_pred eEEECCCCCHHHHHHhCCEEEEECC-------HHHHHHHHcCCceEEec
Confidence 6676666789999999999886555 68899999999999853
No 144
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.62 E-value=0.13 Score=46.88 Aligned_cols=101 Identities=18% Similarity=0.101 Sum_probs=61.9
Q ss_pred EEEEEEecccCCCCH--HHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc-
Q 016053 271 LLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (396)
Q Consensus 271 ~~il~vG~l~~~Kg~--~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~- 347 (396)
.+++..|.-.+.|.+ +.+.+.++.+.+ .+++++++|... +.+..++..+..+..+.+.+.|..
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~---------~~~~ivl~g~~~-----e~~~~~~i~~~~~~~~~~~~~~~~~ 188 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLA---------RGARVVLTGGPA-----ERELAEEIAAALGGPRVVNLAGKTS 188 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHH---------CCCEEEEEechh-----hHHHHHHHHHhcCCCccccCcCCCC
Confidence 344444444444443 455566655543 368888998643 444455555444322345566653
Q ss_pred -CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 348 -LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 348 -~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
.|+..+++.||++|-+.. ..+.-|.+.|+|+|+--.+.
T Consensus 189 l~e~~~li~~~~l~I~~Ds-------g~~HlA~a~~~p~i~l~g~~ 227 (279)
T cd03789 189 LRELAALLARADLVVTNDS-------GPMHLAAALGTPTVALFGPT 227 (279)
T ss_pred HHHHHHHHHhCCEEEeeCC-------HHHHHHHHcCCCEEEEECCC
Confidence 789999999999997543 33445579999999865443
No 145
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.43 E-value=0.24 Score=46.74 Aligned_cols=109 Identities=12% Similarity=0.120 Sum_probs=66.7
Q ss_pred HHHHHcCCC-CCCEEEEEEecc-cCCCCHH--HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHh
Q 016053 259 HVRESLGVR-NEDLLFAIINSV-SRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (396)
Q Consensus 259 ~~r~~~g~~-~~~~~il~vG~l-~~~Kg~~--~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (396)
...+.+++. ++.++.+..|.- .+.|.+. .+.+.++.+.+ .++++++.|+.. +++..++..+.
T Consensus 169 ~~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~---------~~~~vvl~Gg~~-----e~~~~~~i~~~ 234 (348)
T PRK10916 169 ETCAAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLID---------EGYQVVLFGSAK-----DHEAGNEILAA 234 (348)
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHH---------CCCeEEEEeCHH-----hHHHHHHHHHh
Confidence 345555553 345666666663 3567654 34555544432 467888888643 44444444443
Q ss_pred cCCC--Cc-EEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEc
Q 016053 335 KKIQ--DR-VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVL 388 (396)
Q Consensus 335 ~~l~--~~-V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t 388 (396)
.+-+ .+ +.+.|.. .++..+++.||++|-+-. ..+-=|.|.|+|+|+-
T Consensus 235 ~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDT-------Gp~HlAaA~g~P~val 286 (348)
T PRK10916 235 LNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDS-------GLMHVAAALNRPLVAL 286 (348)
T ss_pred cccccccceeeccCCCCHHHHHHHHHhCCEEEecCC-------hHHHHHHHhCCCEEEE
Confidence 3211 12 4566754 789999999999996544 3456688999999974
No 146
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=95.41 E-value=0.61 Score=47.54 Aligned_cols=130 Identities=16% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHcC--CCCCCEEEEEEecccCCCCHHH-HHHHHHHHHHHHHhh-ccCCCCEEEEEEecCCCccchHHHHHHHHHHh-
Q 016053 260 VRESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEK-KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ- 334 (396)
Q Consensus 260 ~r~~~g--~~~~~~~il~vG~l~~~Kg~~~-li~a~~~l~~~~~~~-~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~- 334 (396)
+++..| ++++...++++-|+..+|.+.. ++..+..+.+ +++. ..+..+..+++.|...+.+..- +++.+++.+
T Consensus 432 i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~r-ik~~p~~~~~Pv~~IFaGKAhP~d~~g-K~iIk~I~~v 509 (713)
T PF00343_consen 432 IKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNR-IKNNPNKKIRPVQFIFAGKAHPGDYMG-KEIIKLINNV 509 (713)
T ss_dssp HHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHH-HHHSTTSCCS-EEEEEE----TT-HHH-HHHHHHHHHH
T ss_pred HHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHH-HHhcccCCCCCeEEEEeccCCCCcHHH-HHHHHHHHHH
Confidence 344445 5788899999999999999988 4444444433 3332 1122468899999887665422 333333322
Q ss_pred -------cCCCC--cEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 335 -------KKIQD--RVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 335 -------~~l~~--~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
-.+.+ +|.|+..- .-...++.++||-...|..-.|..|..-+-+|.-|.+-++|--|
T Consensus 510 a~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG 577 (713)
T PF00343_consen 510 AEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDG 577 (713)
T ss_dssp HHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESST
T ss_pred HHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccc
Confidence 22334 78898753 45667889999999988866899999999999999999998655
No 147
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.23 E-value=0.4 Score=45.16 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=65.3
Q ss_pred HcCCCCCCEEEEEEecccCCCCHH--HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCc
Q 016053 263 SLGVRNEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDR 340 (396)
Q Consensus 263 ~~g~~~~~~~il~vG~l~~~Kg~~--~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~ 340 (396)
..+. ++.++++..|.-.+.|.+. .+.+.++.+. + .+.+++++|...+ .+.+..++..+..+-+..
T Consensus 176 ~~~~-~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~----~-----~~~~ivl~g~p~~---~e~~~~~~i~~~~~~~~~ 242 (344)
T TIGR02201 176 EAGV-GQNYIVIQPTSRWFFKCWDNDRFSALIDALH----A-----RGYEVVLTSGPDK---DELAMVNEIAQGCQTPRV 242 (344)
T ss_pred hcCC-CCCEEEEeCCCCccccCCCHHHHHHHHHHHH----h-----CCCeEEEecCCCH---HHHHHHHHHHhhCCCCcc
Confidence 3344 4456667777666667654 4444444432 2 3678888885321 122233443333332233
Q ss_pred EEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 341 VHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 341 V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
+.+.|.. .++..+++.||++|-+-. ..+-=|.|+|+|+|+-=
T Consensus 243 ~~l~g~~sL~el~ali~~a~l~Vs~DS-------Gp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 243 TSLAGKLTLPQLAALIDHARLFIGVDS-------VPMHMAAALGTPLVALF 286 (344)
T ss_pred cccCCCCCHHHHHHHHHhCCEEEecCC-------HHHHHHHHcCCCEEEEE
Confidence 5567764 789999999999997544 44566889999999753
No 148
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=95.12 E-value=0.28 Score=49.99 Aligned_cols=125 Identities=19% Similarity=0.094 Sum_probs=94.7
Q ss_pred CCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccch---HHHHHHHHHHhcCCCCcEE
Q 016053 266 VRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK---FESELRNYVMQKKIQDRVH 342 (396)
Q Consensus 266 ~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~---~~~~l~~~~~~~~l~~~V~ 342 (396)
++++.+.++++=|+..+|.+...+.-+..+.+.++++ ..|.+.+++.|...+.+.. ....+...++..+...+|.
T Consensus 483 ~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d--~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVv 560 (750)
T COG0058 483 VDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKED--WVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVV 560 (750)
T ss_pred cCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcC--CCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEE
Confidence 4577899999999999999999988888887777632 3477888888987766532 2223444444444456788
Q ss_pred EecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 343 FVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 343 ~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
|+..- .-...++.+|||=.+.|..-.|..|..-+-+|.-|.+-|+|--|-
T Consensus 561 Fl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGa 612 (750)
T COG0058 561 FLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGA 612 (750)
T ss_pred EeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccH
Confidence 98753 445667899999998887658999999999999999999986653
No 149
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=95.03 E-value=0.14 Score=45.57 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=59.1
Q ss_pred CCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccch-HHHHHHHHHHhcCCCCcEEEec
Q 016053 267 RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTK-FESELRNYVMQKKIQDRVHFVN 345 (396)
Q Consensus 267 ~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~-~~~~l~~~~~~~~l~~~V~~~g 345 (396)
.++.++++..|.-.+.|.+.. +-+.++.+.+.+ ...+++++|+.. + +.+...+..+...- +.+.+.|
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~--e~~~~l~~~l~~-----~~~~vvl~g~~~----~~~~~~~~~~~~~~~~-~~~~~~~ 170 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPA--EKWAELIERLKE-----RGYRVVLLGGPE----EQEKEIADQIAAGLQN-PVINLAG 170 (247)
T ss_dssp TTSSEEEEE---SSGGGS--H--HHHHHHHHHHCC-----CT-EEEE--SSH----HHHHHHHHHHHTTHTT-TTEEETT
T ss_pred ccCCeEEEeecCCCccccCCH--HHHHHHHHHHHh-----hCceEEEEccch----HHHHHHHHHHHHhccc-ceEeecC
Confidence 356778888888778888665 333444444433 247888889763 1 12333334433221 2577777
Q ss_pred Cc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEc
Q 016053 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVL 388 (396)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t 388 (396)
.. .++..+++.||++|-+-. -.+-=|.|.|+|+|+-
T Consensus 171 ~~~l~e~~ali~~a~~~I~~Dt-------g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 171 KTSLRELAALISRADLVIGNDT-------GPMHLAAALGTPTVAL 208 (247)
T ss_dssp TS-HHHHHHHHHTSSEEEEESS-------HHHHHHHHTT--EEEE
T ss_pred CCCHHHHHHHHhcCCEEEecCC-------hHHHHHHHHhCCEEEE
Confidence 64 789999999999997554 4456688999999985
No 150
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.80 E-value=0.84 Score=45.24 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=100.1
Q ss_pred cccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCcc--chhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEec
Q 016053 201 PLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSK--ELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINS 278 (396)
Q Consensus 201 ~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~--~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~ 278 (396)
...|.+++.+...--.+.+...++.-. .+....|+..-.. +..+|... -.|..+|++++.+++..+..
T Consensus 698 ~~mDYiITDs~tsPl~~a~~ysEkLv~-lPh~ffi~d~~qk~~~~~dpn~k---------P~r~~y~Lp~d~vvf~~FNq 767 (966)
T KOG4626|consen 698 TFMDYIITDSVTSPLELAQQYSEKLVY-LPHCFFIGDHKQKNQDVLDPNNK---------PTRSQYGLPEDAVVFCNFNQ 767 (966)
T ss_pred ceeeEEeecccCChHHHHHHHHHHHhh-CCceEEecCcccccccccCCCCC---------CCCCCCCCCCCeEEEeechh
Confidence 467888888877665555544444321 2234555432211 11122211 15788999888877776666
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCC-CcEEEecCc--CCHHHHHH
Q 016053 279 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNKT--LTVAPYLA 355 (396)
Q Consensus 279 l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~~--~~~~~~~~ 355 (396)
+ .|=-...++....+.. ..|+-.|++.-.-.- -++.++..+++.|++ ++|+|..-. +|=..-..
T Consensus 768 L--yKidP~~l~~W~~ILk-------~VPnS~LwllrfPa~----ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~ 834 (966)
T KOG4626|consen 768 L--YKIDPSTLQMWANILK-------RVPNSVLWLLRFPAV----GEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQ 834 (966)
T ss_pred h--hcCCHHHHHHHHHHHH-------hCCcceeEEEecccc----chHHHHHHHHHhCCCccceeeccccchHHHHHhhh
Confidence 5 4444555666555544 237777777654221 237889999999987 678887743 55556678
Q ss_pred HcCEEEecCCCCCCCccHHHHHHHhcCCCEEEc
Q 016053 356 AIDVLVQNSQAWGECFGRITIEAMAFQLPVLVL 388 (396)
Q Consensus 356 ~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t 388 (396)
-+||.+-+.. .-|- .+-.|.+-+|+|+|+-
T Consensus 835 LaDv~LDTpl--cnGh-TTg~dvLw~GvPmVTm 864 (966)
T KOG4626|consen 835 LADVCLDTPL--CNGH-TTGMDVLWAGVPMVTM 864 (966)
T ss_pred hhhhcccCcC--cCCc-ccchhhhccCCceeec
Confidence 8899987655 3322 3457899999999974
No 151
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.70 E-value=0.21 Score=46.35 Aligned_cols=259 Identities=12% Similarity=0.042 Sum_probs=125.0
Q ss_pred CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceE-EEEcCch----hhhhhccCCcEEEEcCch-
Q 016053 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQ-VISAKGQ----ETINTALKADLIVLNTAV- 160 (396)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~DiV~~~~~~- 160 (396)
+|...+..-+.++|...||+++.+=........ ..+.....+.. ++.-... ....+..++|+|.+-...
T Consensus 14 ~~~~~~~~~~~~~l~~~g~kvlflE~~~~~~~k-----~rd~~~~~~~~~~~~~~~~e~~~~~~i~~fk~d~iv~~~~~~ 88 (373)
T COG4641 14 NGSAEYYRGLLRALKMDGMKVLFLESGDFWDYK-----NRDIDAEDGCTEAFYKDQPELESLLYIREFKPDIIVNMSGDD 88 (373)
T ss_pred CCchhhHHHHHHHHHhccceEEEEecccHHhhh-----cccccCccchhheeecCcHHHHHHHHHHhcCCcEEEEecccc
Confidence 566688888999999999999988744331000 00111111211 1222221 233456899999765421
Q ss_pred ------hhHHHHHHHhcCCCccccceeeeeeecccccCchhhh----ccc-cccccceee-ccccHHHHHHHHHhhhccc
Q 016053 161 ------AGKWLDAVLKEDVPRVLPNVLWWIHEMRGHYFKLDYV----KHL-PLVAGAMID-SHVTAEYWKNRTRERLRIK 228 (396)
Q Consensus 161 ------~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~~~~~~~----~~~-~~~~~~~~~-s~~~~~~~~~~~~~~~g~~ 228 (396)
...+...+....+| ++++.-+.. +...... ..+ .+.+..... +.+.......++.+..+
T Consensus 89 ~~~~~~~~~~~a~l~~~~l~-----~~~w~te~p--~~~~~~~~~~~~~~~~~~l~~fd~v~~~g~~l~~~~yyq~~~-- 159 (373)
T COG4641 89 QPDEESTIDLWAWLKRKCLP-----VIVWYTEDP--YDTDIFSQVAEEQLARRPLFIFDNVLSFGGGLVANKYYQEGG-- 159 (373)
T ss_pred cccceehHHHHHHhhcCCcc-----eEEEEeccc--hhhhhhhhhhHHHhhccccchhhhhhhccchHHHHHHHHhhc--
Confidence 22232333334433 444444331 1111100 001 111111111 11111112233322222
Q ss_pred CCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 016053 229 MPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPS 308 (396)
Q Consensus 229 ~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~ 308 (396)
..+...+++++|.+.|.+.+... .-+-.+.++|+..+. .+..+-+.+..-...+. .+
T Consensus 160 ~~~~~~~~~a~d~~~~~~i~~da----------------~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~------v~ 216 (373)
T COG4641 160 ARNCYYLPWAVDDSLFHPIPPDA----------------SYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKLM------VD 216 (373)
T ss_pred ccceeccCccCCchhcccCCccc----------------cceeeeEEecCCCcc-HHHHHHHHhhccchhhh------cc
Confidence 34578899999999887654211 122367788886554 22222222221100000 12
Q ss_pred EEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC---cCCHHHHHHHcCEEEecCCC-CCC-C--ccHHHHHHHhc
Q 016053 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQA-WGE-C--FGRITIEAMAF 381 (396)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~---~~~~~~~~~~aDv~v~pS~~-~~E-~--fg~~~lEAma~ 381 (396)
-++...|... -..+.... -.+++...|+ ...+..+++..|+.+.-++. ..+ + +.+-+.|+|+|
T Consensus 217 rr~~~~g~~y------~~~~~~~~----~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc 286 (373)
T COG4641 217 RRFYVLGPRY------PDDIWGRT----WEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGC 286 (373)
T ss_pred ceeeecCCcc------chhhhccc----ccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhc
Confidence 4566666642 11111111 1134455554 36788899999998765442 011 2 37889999999
Q ss_pred CCCEEEcCCCC
Q 016053 382 QLPVLVLSELH 392 (396)
Q Consensus 382 G~PVI~t~~gG 392 (396)
|.|.|+....|
T Consensus 287 ~~~liT~~~~~ 297 (373)
T COG4641 287 GGFLITDYWKD 297 (373)
T ss_pred CCccccccHHH
Confidence 99999876543
No 152
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.62 E-value=0.27 Score=50.63 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=93.0
Q ss_pred HHHHcC--CCCCCEEEEEEecccCCCCHHH-HHHHHHHHHHHHHhh-ccCCCCEEEEEEecCCCccchHHHHHHHHHHhc
Q 016053 260 VRESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEK-KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (396)
Q Consensus 260 ~r~~~g--~~~~~~~il~vG~l~~~Kg~~~-li~a~~~l~~~~~~~-~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (396)
++++.| ++++.+.++++-|+..+|.+.. ++..+..+.+. +++ .....+..+++.|...+++. .-+.+.+++...
T Consensus 515 i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i-~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~v 592 (794)
T TIGR02093 515 IKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRI-KEDPPKDIVPRTVIFGGKAAPGYH-MAKLIIKLINSV 592 (794)
T ss_pred HHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHHHH-HhCCCcCCCCeEEEEEecCCCCcH-HHHHHHHHHHHH
Confidence 444555 4678888999999999999999 77777766543 322 00112568889998776653 334444444443
Q ss_pred C--------CCC--cEEEecC--cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 336 K--------IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 336 ~--------l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
. +.+ +|.|+.. +.-...++.+|||-.+.|.+-.|..|..-+-+|.-|.+.++|--|
T Consensus 593 a~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDG 660 (794)
T TIGR02093 593 AEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDG 660 (794)
T ss_pred HHHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccc
Confidence 3 444 7888875 355677899999999888866899999999999999999998544
No 153
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.55 E-value=0.41 Score=44.48 Aligned_cols=99 Identities=15% Similarity=0.052 Sum_probs=63.7
Q ss_pred CCCEEEEEEecccCCCCHH--HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEec
Q 016053 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (396)
Q Consensus 268 ~~~~~il~vG~l~~~Kg~~--~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (396)
+++++++..|.-.+.|.+. .+.+.++.+.+ .+.++++.|+++ ++.+..++..+..+ +..+.|
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~---------~~~~~vl~~g~~----~e~~~~~~i~~~~~---~~~l~g 241 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA---------RGLQIVLPWGND----AEKQRAERIAEALP---GAVVLP 241 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHhhCC---CCeecC
Confidence 4566777777656777763 55555555532 367778875443 23344455444332 235667
Q ss_pred Cc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
.. .++..+++.||++|-+-. ..+-=|.|+|+|+|+-=
T Consensus 242 ~~sL~el~ali~~a~l~I~~DS-------gp~HlAaa~g~P~i~lf 280 (319)
T TIGR02193 242 KMSLAEVAALLAGADAVVGVDT-------GLTHLAAALDKPTVTLY 280 (319)
T ss_pred CCCHHHHHHHHHcCCEEEeCCC-------hHHHHHHHcCCCEEEEE
Confidence 54 789999999999997544 34556778899999854
No 154
>PRK14986 glycogen phosphorylase; Provisional
Probab=94.54 E-value=0.5 Score=48.86 Aligned_cols=131 Identities=17% Similarity=0.121 Sum_probs=92.7
Q ss_pred HHHHcC--CCCCCEEEEEEecccCCCCHHH-HHHHHHHHHHHHHhh-ccCCCCEEEEEEecCCCccchHHHHHHHHHHh-
Q 016053 260 VRESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEK-KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ- 334 (396)
Q Consensus 260 ~r~~~g--~~~~~~~il~vG~l~~~Kg~~~-li~a~~~l~~~~~~~-~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~- 334 (396)
++++.| ++++.+.++++-|+..+|.+.. ++..+..+.+. +++ ..+..+..+++.|...+++.. -..+.+++.+
T Consensus 531 i~~~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i-~~~p~~~~~P~~~IFaGKAaP~y~~-aK~iIk~I~~v 608 (815)
T PRK14986 531 IAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRI-KADPDAKWVPRVNIFAGKAASAYYM-AKHIIHLINDV 608 (815)
T ss_pred HHHHhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHH-HhCCCcCCCCeEEEEeecCCCCcHH-HHHHHHHHHHH
Confidence 344445 5778899999999999999999 88777776543 322 001135789999987766542 2333333322
Q ss_pred -------cCCCC--cEEEecC--cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 335 -------KKIQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 335 -------~~l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
-.+.+ +|.|+.. ++-...++.+|||-.+.|..-.|..|..-+-+|.-|.+.++|--|-
T Consensus 609 a~~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~ 677 (815)
T PRK14986 609 AKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGA 677 (815)
T ss_pred HHHhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCc
Confidence 22334 6888875 3556678999999999888668999999999999999999987663
No 155
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.44 E-value=0.44 Score=44.44 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=61.9
Q ss_pred CCCEEEEEEecccCCCCHH--HHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEec
Q 016053 268 NEDLLFAIINSVSRGKGQD--LFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (396)
Q Consensus 268 ~~~~~il~vG~l~~~Kg~~--~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (396)
+++++++..|.-...|.+. .+.+.+..+.+ .+.++++.|+++ ++.+..++..+.. +.+.+.|
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~---------~~~~ivl~~G~~----~e~~~~~~i~~~~---~~~~l~g 240 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLAP---------SGLRIKLPWGAE----HEEQRAKRLAEGF---PYVEVLP 240 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHHH---------CCCeEEEeCCCH----HHHHHHHHHHccC---CcceecC
Confidence 4455555555544556654 45555555432 356777763332 2334444443322 3467777
Q ss_pred Cc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 346 KT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 346 ~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
.. .++..+++.||++|-+.. ..+-=|.|+|+|+|+-=.+
T Consensus 241 ~~sL~elaali~~a~l~I~nDS-------Gp~HlA~A~g~p~valfGp 281 (322)
T PRK10964 241 KLSLEQVARVLAGAKAVVSVDT-------GLSHLTAALDRPNITLYGP 281 (322)
T ss_pred CCCHHHHHHHHHhCCEEEecCC-------cHHHHHHHhCCCEEEEECC
Confidence 64 789999999999997554 4456788999999985443
No 156
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.26 E-value=0.63 Score=48.16 Aligned_cols=130 Identities=17% Similarity=0.140 Sum_probs=91.9
Q ss_pred HHHHcC--CCCCCEEEEEEecccCCCCHHH-HHHHHHHHHHHHHhh-ccCCCCEEEEEEecCCCccchHHHHHHHHHHhc
Q 016053 260 VRESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEK-KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (396)
Q Consensus 260 ~r~~~g--~~~~~~~il~vG~l~~~Kg~~~-li~a~~~l~~~~~~~-~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (396)
+++..| ++++.+.++++=|+..+|.+.. ++..+..+.+. +++ .....+..+++.|...+++. .-+.+.+++...
T Consensus 518 i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i-~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~v 595 (797)
T cd04300 518 IKKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRI-KENPNADIVPRTFIFGGKAAPGYY-MAKLIIKLINAV 595 (797)
T ss_pred HHHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHH-HhCCCcCCCCeEEEEeccCCCCcH-HHHHHHHHHHHH
Confidence 344445 4788899999999999999999 77777766543 322 00113478888888776653 333333333322
Q ss_pred --------CCCC--cEEEecC--cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 336 --------KIQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 336 --------~l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
.+.+ +|.|+.. +.-...++.+|||-.+.|.+-.|..|..-+-+|.-|.+.++|--|
T Consensus 596 a~~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDG 663 (797)
T cd04300 596 ADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDG 663 (797)
T ss_pred HHHhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccc
Confidence 1334 6888875 355677899999999888866899999999999999999999554
No 157
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.87 E-value=0.35 Score=40.32 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=22.3
Q ss_pred ccccceeeccccHHHHHHHHHhhhcccCCCEEEEecCCccchh
Q 016053 202 LVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVVHLGNSKELM 244 (396)
Q Consensus 202 ~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~ 244 (396)
.+|..++.+...++.+-..+ .+|+.||+-|||++.+
T Consensus 135 ~~D~~isPT~wQ~~~fP~~~-------r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 135 QADAGISPTRWQRSQFPAEF-------RSKISVIHDGIDTDRF 170 (171)
T ss_pred hCCcCcCCCHHHHHhCCHHH-------HcCcEEeecccchhhc
Confidence 45555555555443332222 2679999999998764
No 158
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=93.59 E-value=1.9 Score=42.55 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=58.5
Q ss_pred EEeccc-CCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHH
Q 016053 275 IINSVS-RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 353 (396)
Q Consensus 275 ~vG~l~-~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~ 353 (396)
.-|.-. -.||-...++++.+. -.++..|.+... ....+-..++.+|+-. .+|...+
T Consensus 282 VyGK~~~~w~~k~~~l~~l~~~-----------~eih~tV~~~~~-----~~~~~P~~V~NHG~l~-------~~ef~~l 338 (559)
T PF15024_consen 282 VYGKERYMWKGKEKYLDVLHKY-----------MEIHGTVYDEPQ-----RPPNVPSFVKNHGILS-------GDEFQQL 338 (559)
T ss_pred EEccchhhhcCcHHHHHHHHhh-----------cEEEEEeccCCC-----CCcccchhhhhcCcCC-------HHHHHHH
Confidence 345433 367777777777653 467777765432 1223333344444321 3789999
Q ss_pred HHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCC
Q 016053 354 LAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHP 393 (396)
Q Consensus 354 ~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~ 393 (396)
++.+.|+|=-... .| |-+.+||+|.|+|-|-.....|
T Consensus 339 L~~akvfiGlGfP-~E--gPaPlEAia~G~vFlNp~~~pp 375 (559)
T PF15024_consen 339 LRKAKVFIGLGFP-YE--GPAPLEAIANGCVFLNPRFNPP 375 (559)
T ss_pred HHhhhEeeecCCC-CC--CCChHHHHHcCCccccccCCCC
Confidence 9999999944332 33 4568999999999987765433
No 159
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=93.15 E-value=6 Score=35.21 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=69.2
Q ss_pred HHHHHHHcCCCCCCEEEEEEecccCCCCH--HHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHh
Q 016053 257 REHVRESLGVRNEDLLFAIINSVSRGKGQ--DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (396)
Q Consensus 257 ~~~~r~~~g~~~~~~~il~vG~l~~~Kg~--~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (396)
++..++.+. .+..++-+++|.-.+.=.+ |.+.+....+.+.+.+ ....+++--+-- -.+..++.++.
T Consensus 150 ~e~~~~~~p-~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-----~g~~~lisfSRR-----Tp~~~~s~l~~ 218 (329)
T COG3660 150 REAFKHLLP-LPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-----QGGSFLISFSRR-----TPDTVKSILKN 218 (329)
T ss_pred HHHHHhhCC-CCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-----CCceEEEEeecC-----CcHHHHHHHHh
Confidence 344444433 3566777788876654443 4444444444444433 356666655432 23556666654
Q ss_pred -cCCCCcEEEecCc----CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 335 -KKIQDRVHFVNKT----LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 335 -~~l~~~V~~~g~~----~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+.-.. +.+.... .-..+++++||.+|.+-. .=...-||.+.|+||-+....+
T Consensus 219 ~l~s~~-~i~w~~~d~g~NPY~~~La~Adyii~TaD-----SinM~sEAasTgkPv~~~~~~~ 275 (329)
T COG3660 219 NLNSSP-GIVWNNEDTGYNPYIDMLAAADYIISTAD-----SINMCSEAASTGKPVFILEPPN 275 (329)
T ss_pred ccccCc-eeEeCCCCCCCCchHHHHhhcceEEEecc-----hhhhhHHHhccCCCeEEEecCC
Confidence 43333 3444332 346789999999997533 2244689999999998866554
No 160
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=93.04 E-value=0.5 Score=48.69 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=91.7
Q ss_pred HHHHcC--CCCCCEEEEEEecccCCCCHHH-HHHHHHHHHHHHHhh-ccCCCCEEEEEEecCCCccchHHHHHHHHHHhc
Q 016053 260 VRESLG--VRNEDLLFAIINSVSRGKGQDL-FLHSFYESLELIKEK-KLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (396)
Q Consensus 260 ~r~~~g--~~~~~~~il~vG~l~~~Kg~~~-li~a~~~l~~~~~~~-~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (396)
++++.| ++++.+.++++-|+..+|.+.. ++..+..+.+. +++ .....+..+++.|...+++. .-+.+.+++...
T Consensus 517 i~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i-~~~p~~~~~P~~~IFaGKAaP~y~-~aK~iIklI~~v 594 (798)
T PRK14985 517 VKQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEI-RENPQADRVPRVFLFGAKAAPGYY-LAKNIIFAINKV 594 (798)
T ss_pred HHHHhCCccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHH-HhCCCcCCCCeEEEEeecCCCCcH-HHHHHHHHHHHH
Confidence 334445 5678889999999999999999 87777766543 332 00113478999998776653 233333333332
Q ss_pred C--------CCC--cEEEecC--cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 336 K--------IQD--RVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 336 ~--------l~~--~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
. +.+ +|.|+.. +.-...++.+|||-.+.|.+-.|..|..-+-+|.-|.+.++|--|
T Consensus 595 a~~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDG 662 (798)
T PRK14985 595 AEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG 662 (798)
T ss_pred HHHhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccc
Confidence 1 223 6888875 355677899999999888866899999999999999999988655
No 161
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=92.97 E-value=0.65 Score=46.22 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=59.7
Q ss_pred CCCEEEEEEecccCC-CC----HHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEE
Q 016053 268 NEDLLFAIINSVSRG-KG----QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVH 342 (396)
Q Consensus 268 ~~~~~il~vG~l~~~-Kg----~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~ 342 (396)
++..+++..|..... +. ...+++|++.+ +.++++..++. ..+ .++++||.
T Consensus 295 ~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l------------~~~viw~~~~~-----~~~--------~~~p~Nv~ 349 (507)
T PHA03392 295 TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL------------PYNVLWKYDGE-----VEA--------INLPANVL 349 (507)
T ss_pred CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC------------CCeEEEEECCC-----cCc--------ccCCCceE
Confidence 335777788886532 22 34445555432 35766665432 111 24568999
Q ss_pred EecCcCCHHHHH--HHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 343 FVNKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 343 ~~g~~~~~~~~~--~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+.++... .+++ ..++++| .-|-..++.||+.+|+|+|+-...+
T Consensus 350 i~~w~Pq-~~lL~hp~v~~fI------tHGG~~s~~Eal~~GvP~v~iP~~~ 394 (507)
T PHA03392 350 TQKWFPQ-RAVLKHKNVKAFV------TQGGVQSTDEAIDALVPMVGLPMMG 394 (507)
T ss_pred EecCCCH-HHHhcCCCCCEEE------ecCCcccHHHHHHcCCCEEECCCCc
Confidence 9998643 5677 4588888 3455678899999999999976643
No 162
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=92.82 E-value=1.4 Score=36.31 Aligned_cols=129 Identities=13% Similarity=0.076 Sum_probs=69.7
Q ss_pred cEEEEEeccCCCCChH-HHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcE
Q 016053 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (396)
|+||++.+.. ||.- .....|++.+ .|+++++|-......+ ..+ |-.+ ...+.+.....+|+
T Consensus 1 M~ILlle~y~--ggSHk~~~~~L~~~~---~~~~~lltLP~r~w~W--------RmR--g~AL---~~a~~~~~~~~~dl 62 (168)
T PF12038_consen 1 MRILLLEPYY--GGSHKQWADGLAAHS---EHEWTLLTLPARKWHW--------RMR--GAAL---YFAQQIPLSHSYDL 62 (168)
T ss_pred CeEEEEcccc--ccCHHHHHHHHHHhc---cCCEEEEEcCCCcccc--------ccC--CCHH---HHhhccccccCCCE
Confidence 5899998533 5544 4455555554 4899999843222111 111 1111 01134455577899
Q ss_pred EEEcCchhhHHHHHHHhcCCCccccceeeeeeeccccc-Cch--------hhhc--cccccccceeeccccHHHHHHHHH
Q 016053 154 IVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRGHY-FKL--------DYVK--HLPLVAGAMIDSHVTAEYWKNRTR 222 (396)
Q Consensus 154 V~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~~~-~~~--------~~~~--~~~~~~~~~~~s~~~~~~~~~~~~ 222 (396)
|++.+...-.-+..+.. .+. .++.+..+|+-.-.| ... .+.. ....+|.++.+|.+..+.+.+.+.
T Consensus 63 l~aTsmldLa~l~gL~p-~l~--~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~~~ 139 (168)
T PF12038_consen 63 LFATSMLDLATLRGLRP-DLA--NVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDGIP 139 (168)
T ss_pred EEeeccccHHHHHhhcc-CCC--CCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHHHH
Confidence 99998654433333332 221 245666788854221 111 1122 224688899999998887776655
Q ss_pred hh
Q 016053 223 ER 224 (396)
Q Consensus 223 ~~ 224 (396)
..
T Consensus 140 ~f 141 (168)
T PF12038_consen 140 SF 141 (168)
T ss_pred HH
Confidence 33
No 163
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=92.76 E-value=1.1 Score=46.14 Aligned_cols=155 Identities=16% Similarity=0.089 Sum_probs=101.9
Q ss_pred CEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEE
Q 016053 231 DTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVH 310 (396)
Q Consensus 231 k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~ 310 (396)
.+..+|-|+|...|....+......-..+++..+ .++.+|+-+-++...||+..=+.++.++.+..++. ...+.
T Consensus 240 ~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~---~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~---~~kVv 313 (732)
T KOG1050|consen 240 SVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPF---KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEW---IDKVV 313 (732)
T ss_pred eeeecccccchHHhhccccchhHHHHHHHHhhhc---cCCceEecccccccccCchHHHHHHHHHHHhChhh---hceEE
Confidence 3566788888888765433222233345565554 46778888999999999999999999988876653 24567
Q ss_pred EEEEecCCCccchHHHHHHHH----HHh----cCCC--CcEEEecC---cCCHHHHHHHcCEEEecCCCCCCCccHHHHH
Q 016053 311 AVIIGSDMNAQTKFESELRNY----VMQ----KKIQ--DRVHFVNK---TLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (396)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~----~~~----~~l~--~~V~~~g~---~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lE 377 (396)
++.+..+...+.+..++++.. +++ .+-. ..|+++-. ..++.+++..+|+.+..+. .+|..++.+|
T Consensus 314 liqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~--rdGmnl~~~e 391 (732)
T KOG1050|consen 314 LIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW--RDGMNLVFLE 391 (732)
T ss_pred EEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc--ccccchhhhH
Confidence 777776554443322222222 221 1111 23443332 2678999999999999998 9999999999
Q ss_pred HHhcC----CCEEEcCCCCC
Q 016053 378 AMAFQ----LPVLVLSELHP 393 (396)
Q Consensus 378 Ama~G----~PVI~t~~gG~ 393 (396)
..+|. .+.|.+..-|.
T Consensus 392 ~i~~~~~~~~~lVlsef~G~ 411 (732)
T KOG1050|consen 392 YILCQENKKSVLVLSEFIGD 411 (732)
T ss_pred HHHhhcccCCceEEeeeccc
Confidence 99885 44555554443
No 164
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=92.18 E-value=0.36 Score=40.32 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=49.1
Q ss_pred hhhhccCCcEEEEcCchhhHH-HHHHHhcC-CCccccceeeeeeec---ccccCchhhhccccccccceeeccccHHHHH
Q 016053 144 TINTALKADLIVLNTAVAGKW-LDAVLKED-VPRVLPNVLWWIHEM---RGHYFKLDYVKHLPLVAGAMIDSHVTAEYWK 218 (396)
Q Consensus 144 ~~~~~~~~DiV~~~~~~~~~~-~~~~~~~~-~~~~~~~vv~~~h~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 218 (396)
.+.+..+||+|+|..+.+... +..++..+ .+. .+++..+-++ +..| ..+..|..++.+..+++.+.
T Consensus 83 ~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~--~p~~tvvTD~~~~H~~W-------~~~~~D~y~Vase~~~~~l~ 153 (169)
T PF06925_consen 83 RLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPN--IPVVTVVTDFDTVHPFW-------IHPGVDRYFVASEEVKEELI 153 (169)
T ss_pred HHHhhcCCCEEEECCcchhhhHHHHHHHhhcccC--CcEEEEEcCCCCCCcCe-------ecCCCCEEEECCHHHHHHHH
Confidence 344569999999999986665 55555443 222 2333323322 2222 22577888888887777665
Q ss_pred HHHHhhhcccCCCEEEEe
Q 016053 219 NRTRERLRIKMPDTYVVH 236 (396)
Q Consensus 219 ~~~~~~~g~~~~k~~vI~ 236 (396)
..|++++++.+..
T Consensus 154 -----~~Gi~~~~I~vtG 166 (169)
T PF06925_consen 154 -----ERGIPPERIHVTG 166 (169)
T ss_pred -----HcCCChhHEEEeC
Confidence 4689998887754
No 165
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=92.03 E-value=2.9 Score=33.70 Aligned_cols=100 Identities=13% Similarity=0.222 Sum_probs=61.8
Q ss_pred CEEEEEEecccCCCCHHHHHHHHH--HHHHHHHhhccCCCCEEEEE-EecCCCccchHHHHHHHHHHhcCCCCcEEEecC
Q 016053 270 DLLFAIINSVSRGKGQDLFLHSFY--ESLELIKEKKLEVPSVHAVI-IGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK 346 (396)
Q Consensus 270 ~~~il~vG~l~~~Kg~~~li~a~~--~l~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (396)
.-+++.+|.-. .|.|+.++. ...+.++++| =.+|+| .|.|... ..+......+..++. |....+
T Consensus 4 ~~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G----~~kLiiQ~Grg~~~---~~d~~~~~~k~~gl~--id~y~f 70 (170)
T KOG3349|consen 4 MTVFVTVGTTS----FDDLISCVLSEEFLQELQKRG----FTKLIIQIGRGQPF---FGDPIDLIRKNGGLT--IDGYDF 70 (170)
T ss_pred eEEEEEecccc----HHHHHHHHcCHHHHHHHHHcC----ccEEEEEecCCccC---CCCHHHhhcccCCeE--EEEEec
Confidence 34677777732 788888763 4445566543 234444 6776321 112222222333432 555555
Q ss_pred cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEc
Q 016053 347 TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVL 388 (396)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t 388 (396)
..++.++++.||+++. -+-.-+++|-+..|+|.|+-
T Consensus 71 ~psl~e~I~~AdlVIs------HAGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 71 SPSLTEDIRSADLVIS------HAGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred CccHHHHHhhccEEEe------cCCcchHHHHHHcCCCEEEE
Confidence 6899999999999993 23345789999999998864
No 166
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=91.80 E-value=8.9 Score=34.06 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=35.3
Q ss_pred CcEEEecC---cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCC
Q 016053 339 DRVHFVNK---TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSE 390 (396)
Q Consensus 339 ~~V~~~g~---~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~ 390 (396)
.++..... .+++.++++.+|++|-... -..+=|+++|+|+|+-+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~Is~Rl-------H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 237 FNVIIIDYSLSPDELLELISQADLVISMRL-------HGAILALSLGVPVIAISY 284 (286)
T ss_pred cceeEecCCCCHHHHHHHHhcCCEEEecCC-------HHHHHHHHcCCCEEEEec
Confidence 34444443 3789999999999998777 678889999999998654
No 167
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=91.49 E-value=13 Score=35.29 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=46.8
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCC
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~P 384 (396)
..+++...-.+.++ +....+.++....-..++++.... +++...++++|+.|-.=. -.++=||+.|+|
T Consensus 237 ~~~~i~~~~~~~s~---d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-------HsaI~al~~g~p 306 (385)
T COG2327 237 ALWRITLIDYGASD---DLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-------HSAIMALAFGVP 306 (385)
T ss_pred cceEEEeeeccccc---hhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh-------HHHHHHHhcCCC
Confidence 45555444433322 444455555544433677776543 567779999999886444 567889999999
Q ss_pred EEEcC
Q 016053 385 VLVLS 389 (396)
Q Consensus 385 VI~t~ 389 (396)
+|+-.
T Consensus 307 ~i~i~ 311 (385)
T COG2327 307 AIAIA 311 (385)
T ss_pred eEEEe
Confidence 99854
No 168
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.86 E-value=0.78 Score=34.33 Aligned_cols=75 Identities=8% Similarity=0.132 Sum_probs=51.7
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC----c-C--CHHHHHHHcCEEEecCCCCCCC---ccHHHHHHHh
Q 016053 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK----T-L--TVAPYLAAIDVLVQNSQAWGEC---FGRITIEAMA 380 (396)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~----~-~--~~~~~~~~aDv~v~pS~~~~E~---fg~~~lEAma 380 (396)
++|+|+-. .....+++.++++|.. ..++|. . . .++..+..+|++|++.. .=+ .-.+--+|-.
T Consensus 2 vliVGG~~----~~~~~~~~~~~~~G~~--~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~--~vsH~~~~~vk~~akk 73 (97)
T PF10087_consen 2 VLIVGGRE----DRERRYKRILEKYGGK--LIHHGRDGGDEKKASRLPSKIKKADLVIVFTD--YVSHNAMWKVKKAAKK 73 (97)
T ss_pred EEEEcCCc----ccHHHHHHHHHHcCCE--EEEEecCCCCccchhHHHHhcCCCCEEEEEeC--CcChHHHHHHHHHHHH
Confidence 56777622 2678899999999865 333332 2 2 38889999999988766 222 2234457788
Q ss_pred cCCCEEEcCCCCC
Q 016053 381 FQLPVLVLSELHP 393 (396)
Q Consensus 381 ~G~PVI~t~~gG~ 393 (396)
.|+|++-++..|.
T Consensus 74 ~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 74 YGIPIIYSRSRGV 86 (97)
T ss_pred cCCcEEEECCCCH
Confidence 8999999986664
No 169
>PLN02448 UDP-glycosyltransferase family protein
Probab=90.36 E-value=2.2 Score=41.97 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=56.5
Q ss_pred CCCEEEEEEecccCC--CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEec
Q 016053 268 NEDLLFAIINSVSRG--KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN 345 (396)
Q Consensus 268 ~~~~~il~vG~l~~~--Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g 345 (396)
++..+++..|..... +-+..++++++. .+..++++..+. ...+.+.. .+++.+.+
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~------------~~~~~lw~~~~~------~~~~~~~~-----~~~~~v~~ 329 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRD------------SGVRFLWVARGE------ASRLKEIC-----GDMGLVVP 329 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHh------------CCCCEEEEEcCc------hhhHhHhc-----cCCEEEec
Confidence 345777788886432 123333333332 466777765432 11122221 24677777
Q ss_pred CcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 346 KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 346 ~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+..+ .++++..++-.+-+ -|--++++||+++|+|+|+-...+
T Consensus 330 w~pQ-~~iL~h~~v~~fvt----HgG~nS~~eal~~GvP~l~~P~~~ 371 (459)
T PLN02448 330 WCDQ-LKVLCHSSVGGFWT----HCGWNSTLEAVFAGVPMLTFPLFW 371 (459)
T ss_pred cCCH-HHHhccCccceEEe----cCchhHHHHHHHcCCCEEeccccc
Confidence 7643 46888888732222 344478899999999999976543
No 170
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=90.04 E-value=14 Score=33.24 Aligned_cols=269 Identities=13% Similarity=0.072 Sum_probs=121.2
Q ss_pred ChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch-hhhhhccCCcEEEEcCchhhH---
Q 016053 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-ETINTALKADLIVLNTAVAGK--- 163 (396)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~DiV~~~~~~~~~--- 163 (396)
|+.+...+.-....+.|+++++++........+ -........+..+..... ..+.+-.++||+..++..+..
T Consensus 2 GVTr~a~e~~~wf~KNg~~~~i~~a~e~sftR~----dsH~~~~~si~k~~~~e~de~v~~vN~yDI~m~nSvPa~~vqE 77 (355)
T PF11440_consen 2 GVTRNALEMRDWFDKNGVEFTIVSADEKSFTRP----DSHDSKSFSIPKYLAKEYDETVKKVNDYDIVMFNSVPATKVQE 77 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEETSS--TTT----TSSS-TTTEEEE-TTTHHHHHHHHHTSSSEEEEEE--BTTS-H
T ss_pred CccccHHHHHHHHHhcCCeeEEEEecccccCCc----cccccceeeeehhhHHHHHHHHHHhhccCEEEEecccCchHHH
Confidence 677888889999999999999999543321110 111122233444433322 334455799999988732211
Q ss_pred -HH---HHHHhcCCCccccceeeeeeecccccCc--hhhhccccccccceeeccccH---HHHHHHHHhhhcc--cCCCE
Q 016053 164 -WL---DAVLKEDVPRVLPNVLWWIHEMRGHYFK--LDYVKHLPLVAGAMIDSHVTA---EYWKNRTRERLRI--KMPDT 232 (396)
Q Consensus 164 -~~---~~~~~~~~~~~~~~vv~~~h~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~g~--~~~k~ 232 (396)
.. ....+ +++.. .+++...|+....... ......++.+|.+.+.+...- ..+.+.+.+...+ +-+++
T Consensus 78 ~~iNnY~kii~-~Ik~~-ik~V~~~Hdh~~lsI~rn~~le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~ 155 (355)
T PF11440_consen 78 AIINNYEKIIK-KIKPS-IKVVGFMHDHNKLSIDRNPYLEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKF 155 (355)
T ss_dssp HHHHHHHHHHH-CS-TT-SEEEEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-----
T ss_pred HHHHHHHHHHH-hcccc-ceeEEEeeccceeeccccccHHHHHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhc
Confidence 11 11222 23211 2456677776322111 123345567777777665432 1111222211110 11222
Q ss_pred EEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEE---EEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCE
Q 016053 233 YVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLF---AIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSV 309 (396)
Q Consensus 233 ~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~i---l~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~ 309 (396)
..++|.=++. +-++.|..+-.+..++.. +|+||..-.||+..+++.-++.. +-+++
T Consensus 156 p~v~nfqpp~-------------~i~~~Rstywkd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~l--------K~~~~ 214 (355)
T PF11440_consen 156 PMVFNFQPPM-------------DINKYRSTYWKDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKIL--------KPAGF 214 (355)
T ss_dssp --EEE----B--------------HHHHHHHH---GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTT--------TTTT-
T ss_pred ceeeecCCcc-------------cHHHHHHHHhhhhHhhhcccceeeeeeeeecCcHHHhhhHHHhc--------CCcch
Confidence 3333321111 123345555544455555 89999999999999999988753 23788
Q ss_pred EEEEEecCCCccchHHHHHHHH-----------HHhcCC--CCcEEEecC-c-CCHHHHHHHcCEEEecCCC----CCCC
Q 016053 310 HAVIIGSDMNAQTKFESELRNY-----------VMQKKI--QDRVHFVNK-T-LTVAPYLAAIDVLVQNSQA----WGEC 370 (396)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~-----------~~~~~l--~~~V~~~g~-~-~~~~~~~~~aDv~v~pS~~----~~E~ 370 (396)
+-++-|-.. ++.... +.+. +.+..+ ..-+-.+|. + +|+.+.++.+-..+.-+.. =.+.
T Consensus 215 ~t~~~Gier--S~A~~~-i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~ 291 (355)
T PF11440_consen 215 KTIMEGIER--SPAKIS-IKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRS 291 (355)
T ss_dssp EEEEE---S--STHHHH-HHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS-
T ss_pred hHHhhhhhc--CCceee-eecCCcccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhh
Confidence 888888532 121111 1111 001111 123555665 2 7888888888777655442 1335
Q ss_pred ccHHHHHHHhcCC-CEE
Q 016053 371 FGRITIEAMAFQL-PVL 386 (396)
Q Consensus 371 fg~~~lEAma~G~-PVI 386 (396)
+-.+-+|..|||. ||.
T Consensus 292 mEYt~iE~~A~GtIPVF 308 (355)
T PF11440_consen 292 MEYTQIELIAVGTIPVF 308 (355)
T ss_dssp --HHHHHHHHCTSEEEE
T ss_pred hhhheeeeeeeceeeee
Confidence 6678999999995 444
No 171
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=89.83 E-value=1.3 Score=37.99 Aligned_cols=38 Identities=18% Similarity=0.099 Sum_probs=27.4
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCC
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 115 (396)
||||+.+..... ..-+..|.++|++.||+|+|+++...
T Consensus 1 M~ILlTNDDGi~---a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGID---APGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-TT---SHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCCCCC---CHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 589987753221 26788899999888899999996543
No 172
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=89.49 E-value=0.8 Score=33.18 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=30.4
Q ss_pred hhhhhhccCCcEEEEcCchhhHHHHHHHhcCCCccccceeeeeeeccc
Q 016053 142 QETINTALKADLIVLNTAVAGKWLDAVLKEDVPRVLPNVLWWIHEMRG 189 (396)
Q Consensus 142 ~~~~~~~~~~DiV~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~h~~~~ 189 (396)
.|.+..++++||||.|+..+..........+ ..+.+.+++.|...+
T Consensus 42 ~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~--~mGlktVfTDHSLfg 87 (90)
T PF08288_consen 42 LRNILIRERIDIVHGHQAFSTLCHEAILHAR--TMGLKTVFTDHSLFG 87 (90)
T ss_pred HHHHHHHcCeeEEEeehhhhHHHHHHHHHHH--hCCCcEEeecccccc
Confidence 3566678999999999977665444433322 112458899997643
No 173
>PRK09739 hypothetical protein; Provisional
Probab=88.96 E-value=0.96 Score=38.90 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=30.9
Q ss_pred ccccEEEEEeccCCCCChH-HHHHHHHHHHHhCCCEEEEEe
Q 016053 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|+|||||+|......+|.. .....+++.+.+.|++|.++-
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5567999998655555543 777888889999999999886
No 174
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=88.27 E-value=1.7 Score=36.23 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=45.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhh-hccCCcE
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-TALKADL 153 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Di 153 (396)
++|++++...+.|| --.-+++.|.+.|++|+++.........+......+.+...++.+.......... ....+|+
T Consensus 26 ~~v~il~G~GnNGg---Dgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dl 102 (169)
T PF03853_consen 26 PRVLILCGPGNNGG---DGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADL 102 (169)
T ss_dssp -EEEEEE-SSHHHH---HHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESE
T ss_pred CeEEEEECCCCChH---HHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccE
Confidence 47888886555555 5566789999999999996643332222333233345566677776654443322 2236777
Q ss_pred EEE
Q 016053 154 IVL 156 (396)
Q Consensus 154 V~~ 156 (396)
|+-
T Consensus 103 IID 105 (169)
T PF03853_consen 103 IID 105 (169)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 175
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=88.25 E-value=1.3 Score=35.31 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch
Q 016053 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ 142 (396)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (396)
+|--.=...++++|+++||||.+.+... +.+.....|++.......
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~~----------~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPPD----------FRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETGG----------GHHHHHHTT-EEEESSSC
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeeccc----------ceecccccCceEEEecCC
Confidence 4444778899999999999999888543 555667788888776554
No 176
>PLN03007 UDP-glucosyltransferase family protein
Probab=88.03 E-value=3.7 Score=40.68 Aligned_cols=48 Identities=13% Similarity=-0.020 Sum_probs=34.7
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
.+++..++..+ .++++.+++-.+-+. |--++++||+++|+|+|+....
T Consensus 345 ~g~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GVP~v~~P~~ 392 (482)
T PLN03007 345 KGLIIRGWAPQ-VLILDHQATGGFVTH----CGWNSLLEGVAAGLPMVTWPVG 392 (482)
T ss_pred CCEEEecCCCH-HHHhccCccceeeec----CcchHHHHHHHcCCCeeeccch
Confidence 57888888754 578888887333233 3347889999999999987653
No 177
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=87.37 E-value=4.5 Score=39.94 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.2
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
++|+++- +..-|.-.-+.+|++.|..+|+.|++++..
T Consensus 10 ~HVvl~P--fpaqGHi~P~l~LAk~La~~G~~VTfv~T~ 46 (477)
T PLN02863 10 THVLVFP--FPAQGHMIPLLDLTHRLALRGLTITVLVTP 46 (477)
T ss_pred CEEEEec--CcccchHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4677665 334567788999999999999999999854
No 178
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=86.46 E-value=8.7 Score=32.61 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHhC--CCEEEEEeccCCCCchhhhhhhhhhhh-hcceEEEEcCc---hhhhhhccCCcEEEEcCc-h
Q 016053 88 GGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMW-DRGVQVISAKG---QETINTALKADLIVLNTA-V 160 (396)
Q Consensus 88 G~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~DiV~~~~~-~ 160 (396)
|--..+..|++.|.++ |+.+.+-+...... . ...+.+. .....+++... .+.+....+||+++.... .
T Consensus 32 GE~~a~~~Li~~l~~~~p~~~illT~~T~tg~--~---~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~~EtEl 106 (186)
T PF04413_consen 32 GEVNAARPLIKRLRKQRPDLRILLTTTTPTGR--E---MARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIWVETEL 106 (186)
T ss_dssp HHHHHHHHHHHHHTT---TS-EEEEES-CCHH--H---HHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEEES---
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCCchH--H---HHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEEEcccc
Confidence 4349999999999997 77777766432210 0 0111111 12234444443 255666789999976652 2
Q ss_pred hhHHHHHHHhcCCCccccceeeeeeeccc-----ccCchhhhccccccccceeeccccHHHHHHHHHhhhcccCCCEEEE
Q 016053 161 AGKWLDAVLKEDVPRVLPNVLWWIHEMRG-----HYFKLDYVKHLPLVAGAMIDSHVTAEYWKNRTRERLRIKMPDTYVV 235 (396)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~vv~~~h~~~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~k~~vI 235 (396)
-.-.+..+.+.++|.. +........ .++.......+...+.+.+.+....+.+. ..|.+++++.+.
T Consensus 107 WPnll~~a~~~~ip~~----LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~-----~lG~~~~~v~v~ 177 (186)
T PF04413_consen 107 WPNLLREAKRRGIPVV----LVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFR-----KLGAPPERVHVT 177 (186)
T ss_dssp -HHHHHH-----S-EE----EEEE--------------HHHHHHGGG-SEEEESSHHHHHHHH-----TTT-S--SEEE-
T ss_pred CHHHHHHHhhcCCCEE----EEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHH-----HcCCCcceEEEe
Confidence 2334455666676642 211221111 11222344455677888888877776655 678888899987
Q ss_pred ec
Q 016053 236 HL 237 (396)
Q Consensus 236 ~n 237 (396)
.|
T Consensus 178 Gn 179 (186)
T PF04413_consen 178 GN 179 (186)
T ss_dssp --
T ss_pred Cc
Confidence 75
No 179
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=85.89 E-value=8 Score=33.59 Aligned_cols=85 Identities=11% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhc-CCCCcEEEecCcCCHHHHHHHcCEEEecCCC-------CCC-CccHHHHH
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQK-KIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------WGE-CFGRITIE 377 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~-~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~-------~~E-~fg~~~lE 377 (396)
.+.++.++........++...+.+..+++ |....+...-..++..+.+..||++++|--. |.+ ++--.+-|
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~ 109 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKA 109 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHH
Confidence 46788888877654455677777777878 7643222222235678899999999998531 222 22333456
Q ss_pred HHhcCCCEEEcCCC
Q 016053 378 AMAFQLPVLVLSEL 391 (396)
Q Consensus 378 Ama~G~PVI~t~~g 391 (396)
+...|+|++.+..|
T Consensus 110 ~~~~g~~i~G~SAG 123 (212)
T cd03146 110 ALERGVVYIGWSAG 123 (212)
T ss_pred HHHCCCEEEEECHh
Confidence 66789999988765
No 180
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=83.30 E-value=13 Score=36.80 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=56.7
Q ss_pred HHHHHcCC-CCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCC
Q 016053 259 HVRESLGV-RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (396)
Q Consensus 259 ~~r~~~g~-~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (396)
++.+-+.- .++..+++..|.+.. ...+..++++.+..+. .|+ ++++.-++. .... +
T Consensus 265 ~~~~~~~~~~~~~vv~vsfGs~~~-~~~~~~~~~~~~~~~~-------~~~-~~iW~~~~~-----~~~~---------l 321 (500)
T PF00201_consen 265 ELWNFLDSSGKKGVVYVSFGSIVS-SMPEEKLKEIAEAFEN-------LPQ-RFIWKYEGE-----PPEN---------L 321 (500)
T ss_dssp HHHHHTSTTTTTEEEEEE-TSSST-T-HHHHHHHHHHHHHC-------STT-EEEEEETCS-----HGCH---------H
T ss_pred ccchhhhccCCCCEEEEecCcccc-hhHHHHHHHHHHHHhh-------CCC-ccccccccc-----cccc---------c
Confidence 34444433 245677777888753 2344444444443331 255 777765542 1111 2
Q ss_pred CCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
++|+....+..+ .++++...+-++-+. |--++++||+.+|+|+|+-..-|
T Consensus 322 ~~n~~~~~W~PQ-~~lL~hp~v~~fitH----gG~~s~~Ea~~~gvP~l~~P~~~ 371 (500)
T PF00201_consen 322 PKNVLIVKWLPQ-NDLLAHPRVKLFITH----GGLNSTQEALYHGVPMLGIPLFG 371 (500)
T ss_dssp HTTEEEESS--H-HHHHTSTTEEEEEES------HHHHHHHHHCT--EEE-GCST
T ss_pred cceEEEeccccc-hhhhhcccceeeeec----cccchhhhhhhccCCccCCCCcc
Confidence 267888887654 478877666444343 45578999999999999976543
No 181
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=83.16 E-value=3.2 Score=32.63 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=32.2
Q ss_pred CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+++.+++..+|++|--|. .+..--.+-.++.+|+|+|...+|.
T Consensus 59 ~~l~~~~~~~DVvIDfT~--p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTN--PDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp S-HHHHTTH-SEEEEES---HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred hhHHHhcccCCEEEEcCC--hHHhHHHHHHHHhCCCCEEEECCCC
Confidence 678999999999998888 7777677778899999999977764
No 182
>PLN03004 UDP-glycosyltransferase
Probab=82.72 E-value=11 Score=37.03 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=34.6
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
.++...++..+ .++++.+++-.+-+. +--++++||+++|+|+|+....
T Consensus 334 ~g~~v~~W~PQ-~~iL~H~~v~~FvTH----~G~nS~lEal~~GVP~v~~P~~ 381 (451)
T PLN03004 334 KGMVVKSWAPQ-VPVLNHKAVGGFVTH----CGWNSILEAVCAGVPMVAWPLY 381 (451)
T ss_pred CcEEEEeeCCH-HHHhCCCccceEecc----CcchHHHHHHHcCCCEEecccc
Confidence 46777777644 468999998333233 3447899999999999987653
No 183
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=82.05 E-value=47 Score=31.50 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=64.7
Q ss_pred HhHHHHHHHcCCC---CCCEEEEEEecccCCCC-HHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHH
Q 016053 255 VLREHVRESLGVR---NEDLLFAIINSVSRGKG-QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330 (396)
Q Consensus 255 ~~~~~~r~~~g~~---~~~~~il~vG~l~~~Kg-~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~ 330 (396)
..+..+.+++|++ ++...|. -+.+.+. +..++++.+.. ...+.++|.++- -...+.+
T Consensus 166 ~~~~~~~~~lg~~~~~~~~~~vs---lF~Ye~~~l~~ll~~~~~~----------~~pv~llvp~g~------~~~~~~~ 226 (374)
T PF10093_consen 166 AARAAFLRRLGLPEPEPGALRVS---LFCYENAALASLLDAWAAS----------PKPVHLLVPEGR------ALNSLAA 226 (374)
T ss_pred HHHHHHHHHcCCCCCCCCCeEEE---EEeCCchHHHHHHHHHhcC----------CCCeEEEecCCc------cHHHHHH
Confidence 3467788899985 3444433 3344555 78888887752 256777777753 2333332
Q ss_pred HHH----------hcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEE
Q 016053 331 YVM----------QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (396)
Q Consensus 331 ~~~----------~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI 386 (396)
... +.| .-.++.++++ ++..+++-.||+-+.- +|- +.+=|.-+|+|.|
T Consensus 227 ~~~~~~~~~g~~~~~g-~l~l~~lPF~~Q~~yD~LLw~cD~NfVR----GED---SfVRAqwAgkPFv 286 (374)
T PF10093_consen 227 WLGDALLQAGDSWQRG-NLTLHVLPFVPQDDYDRLLWACDFNFVR----GED---SFVRAQWAGKPFV 286 (374)
T ss_pred HhccccccCccccccC-CeEEEECCCCCHHHHHHHHHhCccceEe----cch---HHHHHHHhCCCce
Confidence 222 111 1256777775 7899999999997753 332 3566778888876
No 184
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=81.26 E-value=16 Score=31.59 Aligned_cols=85 Identities=11% Similarity=0.041 Sum_probs=57.6
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC---cCCHHHHHHHcCEEEecCCC-------CCCC-ccHHH
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---TLTVAPYLAAIDVLVQNSQA-------WGEC-FGRIT 375 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~---~~~~~~~~~~aDv~v~pS~~-------~~E~-fg~~~ 375 (396)
.+.++.++........++.+.+.+..+++|........-. .+++.+.+..||+++++--. |.+. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 4677788876654444567778888888887643333321 26788899999999886431 3333 33357
Q ss_pred HHHHhcCCCEEEcCCC
Q 016053 376 IEAMAFQLPVLVLSEL 391 (396)
Q Consensus 376 lEAma~G~PVI~t~~g 391 (396)
.|....|+|++.+..|
T Consensus 108 ~~~~~~G~v~~G~SAG 123 (210)
T cd03129 108 LKRVARGVVIGGTSAG 123 (210)
T ss_pred HHHHHcCCeEEEcCHH
Confidence 8888889999988765
No 185
>PLN02534 UDP-glycosyltransferase
Probab=80.20 E-value=17 Score=36.13 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=34.0
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
.++...|+..+ .+++...++-.+- ..+-.++++||+++|+|+|+-...
T Consensus 344 ~g~~v~~w~pq-~~iL~h~~v~~fv----tH~G~ns~~ea~~~GvP~v~~P~~ 391 (491)
T PLN02534 344 RGLLIKGWAPQ-VLILSHPAIGGFL----THCGWNSTIEGICSGVPMITWPLF 391 (491)
T ss_pred CCeeccCCCCH-HHHhcCCccceEE----ecCccHHHHHHHHcCCCEEecccc
Confidence 45666777654 5688888883222 334457899999999999987653
No 186
>PLN02167 UDP-glycosyltransferase family protein
Probab=79.39 E-value=16 Score=36.10 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=30.4
Q ss_pred CcEEEecCcCCHHHHHHHcC--EEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAID--VLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aD--v~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
++..+.++..+ .++++... .||. . |--++++||+++|+|+|+-...
T Consensus 340 ~rg~v~~w~PQ-~~iL~h~~vg~fvt--H----~G~nS~~Eal~~GvP~l~~P~~ 387 (475)
T PLN02167 340 GRGLVCGWAPQ-VEILAHKAIGGFVS--H----CGWNSVLESLWFGVPIATWPMY 387 (475)
T ss_pred cCeeeeccCCH-HHHhcCcccCeEEe--e----CCcccHHHHHHcCCCEEecccc
Confidence 34556676533 46787755 4653 2 2236789999999999986543
No 187
>PRK05380 pyrG CTP synthetase; Validated
Probab=79.07 E-value=73 Score=31.83 Aligned_cols=168 Identities=11% Similarity=0.018 Sum_probs=90.7
Q ss_pred ccccceeecccc-HHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEeccc
Q 016053 202 LVAGAMIDSHVT-AEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (396)
Q Consensus 202 ~~~~~~~~s~~~-~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~ 280 (396)
.-|-++|.|... .+..++++....+++.+.+...+ |.+.....|-...++.-.+.+.+.++++.
T Consensus 203 ~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~vi~~~---d~~~iy~vPl~l~~q~~~~~i~~~l~l~~------------ 267 (533)
T PRK05380 203 QPDILVCRSERPLPEEEKRKIALFCNVPEEAVISAP---DVDSIYEVPLLLHEQGLDDIVLERLGLEA------------ 267 (533)
T ss_pred CCCEEEEecCCCCCHHHHHHHHhccCCCHHHEEEcC---CCccHHhhhHHHHHCCCHHHHHHHcCCCC------------
Confidence 455666666433 34445555545566665554444 34433333333333444466778888752
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHH---HHHHhcCCCCcEEEecCc--C--CHHHH
Q 016053 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELR---NYVMQKKIQDRVHFVNKT--L--TVAPY 353 (396)
Q Consensus 281 ~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~---~~~~~~~l~~~V~~~g~~--~--~~~~~ 353 (396)
+..+++.-.+.+..+.. ....+++-+||.-.+....|..-.+ ......+..-++.++... + +..+.
T Consensus 268 ~~~~~~~w~~~~~~~~~-------~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~ 340 (533)
T PRK05380 268 PEPDLSEWEELVERLKN-------PKGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAEL 340 (533)
T ss_pred CCCCHHHHHHHHHHHhC-------CCCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhH
Confidence 12222332222322211 1146899999987644333444333 333334444456666653 2 36788
Q ss_pred HHHcCEEEecCCC---CCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 354 LAAIDVLVQNSQA---WGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 354 ~~~aDv~v~pS~~---~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+..+|-+++|.-+ +.++.-..+-+|...|+|+++.-.|
T Consensus 341 L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 341 LKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred hhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999987642 1223233456777889999986544
No 188
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=78.89 E-value=61 Score=32.40 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=53.1
Q ss_pred CEEEEEEecCCC--ccchHHHHHHHHHHhcCCCCcEEEecC--cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHH--hc
Q 016053 308 SVHAVIIGSDMN--AQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AF 381 (396)
Q Consensus 308 ~~~l~ivG~g~~--~~~~~~~~l~~~~~~~~l~~~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAm--a~ 381 (396)
+-.+.|+|.... ..+.+..+++++.+++|++-++.|.+. .+|+.. +..|++-|.++. . +|..+.+.| -+
T Consensus 158 ~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~-l~~A~~NIv~~~--~--~g~~~A~~Le~~f 232 (511)
T TIGR01278 158 KPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLAR-LPAAWLNICPYR--E--IGLMAAEYLKEKF 232 (511)
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHh-cccCcEEEEech--H--HHHHHHHHHHHHh
Confidence 345788886532 124567899999999999987777654 356544 477788777665 2 566677777 67
Q ss_pred CCCEEEc
Q 016053 382 QLPVLVL 388 (396)
Q Consensus 382 G~PVI~t 388 (396)
|+|.+.+
T Consensus 233 GiP~i~~ 239 (511)
T TIGR01278 233 GQPYITT 239 (511)
T ss_pred CCCcccc
Confidence 9998854
No 189
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=78.34 E-value=5.2 Score=30.07 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=43.9
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe-ccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcE
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (396)
||||++.+ |+ +-..|+..|.+.----.+++ +.++. .........+..-.......+.+..++|+
T Consensus 1 MkVLviGs-----Gg--REHAia~~l~~s~~v~~v~~aPGN~G--------~~~~~~~~~~~~~d~~~l~~~a~~~~idl 65 (100)
T PF02844_consen 1 MKVLVIGS-----GG--REHAIAWKLSQSPSVEEVYVAPGNPG--------TAELGKNVPIDITDPEELADFAKENKIDL 65 (100)
T ss_dssp EEEEEEES-----SH--HHHHHHHHHTTCTTEEEEEEEE--TT--------GGGTSEEE-S-TT-HHHHHHHHHHTTESE
T ss_pred CEEEEECC-----CH--HHHHHHHHHhcCCCCCEEEEeCCCHH--------HHhhceecCCCCCCHHHHHHHHHHcCCCE
Confidence 58999984 43 55566777776432223333 44442 11111110011111112334556799999
Q ss_pred EEEcC--chhhHHHHHHHhcCCCcc
Q 016053 154 IVLNT--AVAGKWLDAVLKEDVPRV 176 (396)
Q Consensus 154 V~~~~--~~~~~~~~~~~~~~~~~~ 176 (396)
|++-. |........+...+++..
T Consensus 66 vvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 66 VVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp EEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred EEECChHHHHHHHHHHHHHCCCcEE
Confidence 99876 455556667777777643
No 190
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=77.41 E-value=81 Score=31.47 Aligned_cols=167 Identities=10% Similarity=-0.027 Sum_probs=84.7
Q ss_pred ccccceeeccc-cHHHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEeccc
Q 016053 202 LVAGAMIDSHV-TAEYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (396)
Q Consensus 202 ~~~~~~~~s~~-~~~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~ 280 (396)
.-|-++|.|.. .....++++....+++.+.+.-.+ |.+.....|-...++.-.+.+.++++++..
T Consensus 204 ~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~vi~~~---d~~~iY~vPl~l~~q~~~~~i~~~l~l~~~----------- 269 (525)
T TIGR00337 204 QPDIIICRSSEPLDPSTKDKIALFCDVEEEAVINAH---DVSSIYEVPLLLLKQGLDDYLCRRLNLNCD----------- 269 (525)
T ss_pred CCCEEEEecCCCCCHHHHHHHHhccCCCHHHEEEcC---CCccHhhhhHHHHHCChHHHHHHHhCCCCC-----------
Confidence 44556666543 334445555544566665544443 444443334333334445667788887531
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC-c--CCH----HHH
Q 016053 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-T--LTV----APY 353 (396)
Q Consensus 281 ~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-~--~~~----~~~ 353 (396)
..+++.--+.... +.. ....+++-++|+-.+....| ..+.+.....+...++.+... . +++ .+.
T Consensus 270 -~~~~~~W~~~~~~----~~~---~~~~v~IalVGKY~~~~daY-~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~ 340 (525)
T TIGR00337 270 -EADLSEWEELVEK----FIN---PKHEVTIGIVGKYVELKDSY-LSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEF 340 (525)
T ss_pred -CCcHHHHHHHHHH----hhC---CCCCcEEEEEeCCcCCHHHH-HHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhh
Confidence 2222222222222 211 11358999999875443444 344445444454323332221 1 121 245
Q ss_pred HHHcCEEEecCCC---CCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 354 LAAIDVLVQNSQA---WGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 354 ~~~aDv~v~pS~~---~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+..+|.+++|.-+ ..++.-..+-+|...++|+++.-.|
T Consensus 341 L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 341 LKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred hcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 7789999987652 0123223455667789999976543
No 191
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=76.59 E-value=15 Score=33.84 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCEE-E-EEEecCCCccchHHHHHHHHHHhcCCCCcEEEec--CcCCH----HHHHHH
Q 016053 285 QDLFLHSFYESLELIKEKKLEVPSVH-A-VIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN--KTLTV----APYLAA 356 (396)
Q Consensus 285 ~~~li~a~~~l~~~~~~~~~~~~~~~-l-~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g--~~~~~----~~~~~~ 356 (396)
++.-+++++++. |+++ + ++..++.+.+....++++..+++.|++ |.-.. ...|+ ..+...
T Consensus 145 v~q~i~lik~~~----------Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~--vve~~v~~~ndi~~a~~~l~g~ 212 (322)
T COG2984 145 VAQQIELIKALL----------PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLE--VVEAAVTSVNDIPRAVQALLGK 212 (322)
T ss_pred HHHHHHHHHHhC----------CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCE--EEEEecCcccccHHHHHHhcCC
Confidence 344555555543 6665 3 577777766677888899999998886 33333 23443 344466
Q ss_pred cCEEEecCCC-CCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 357 IDVLVQNSQA-WGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 357 aDv~v~pS~~-~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
.|++..|-.. -..++...+.+|...++|+++++.+
T Consensus 213 ~d~i~~p~dn~i~s~~~~l~~~a~~~kiPli~sd~~ 248 (322)
T COG2984 213 VDVIYIPTDNLIVSAIESLLQVANKAKIPLIASDTS 248 (322)
T ss_pred CcEEEEecchHHHHHHHHHHHHHHHhCCCeecCCHH
Confidence 7888777542 1224456678999999999999864
No 192
>PLN02555 limonoid glucosyltransferase
Probab=75.89 E-value=28 Score=34.50 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCcEEEecCcCCHHHHHHH--cCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 338 QDRVHFVNKTLTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~--aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
.+++.+.++..+ .++++. +..||. -|--++++||+.+|+|+|+...-
T Consensus 336 ~~~g~v~~W~PQ-~~iL~H~~v~~Fvt------H~G~nS~~Eai~~GVP~l~~P~~ 384 (480)
T PLN02555 336 GDKGKIVQWCPQ-EKVLAHPSVACFVT------HCGWNSTMEALSSGVPVVCFPQW 384 (480)
T ss_pred CCceEEEecCCH-HHHhCCCccCeEEe------cCCcchHHHHHHcCCCEEeCCCc
Confidence 367777777644 457744 555662 33347889999999999987653
No 193
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=75.47 E-value=13 Score=30.54 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=25.5
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
+.++|+++. || ......++.|.+.|++|+|+.+
T Consensus 12 ~~~~vlVvG-----GG--~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIG-----GG--KIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEEC-----CC--HHHHHHHHHHHhCCCEEEEEcC
Confidence 446777765 33 6778888999999999999963
No 194
>PLN02554 UDP-glycosyltransferase family protein
Probab=75.37 E-value=21 Score=35.45 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=31.5
Q ss_pred CcEEEecCcCCHHHHHHHcCE--EEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv--~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+++.+.++..+ .++++...+ || + -|--++++||+.+|+|+|+-...+
T Consensus 342 ~~g~v~~W~PQ-~~iL~H~~v~~Fv--t----H~G~nS~~Ea~~~GVP~l~~P~~~ 390 (481)
T PLN02554 342 DIGKVIGWAPQ-VAVLAKPAIGGFV--T----HCGWNSILESLWFGVPMAAWPLYA 390 (481)
T ss_pred cCceEEeeCCH-HHHhCCcccCccc--c----cCccchHHHHHHcCCCEEecCccc
Confidence 56666777543 467744444 55 2 233468899999999999876543
No 195
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=75.31 E-value=20 Score=27.12 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEec
Q 016053 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQN 363 (396)
Q Consensus 284 g~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~p 363 (396)
|.+.++++++. ...+|+|+-...+. ...+.+.+.++.++++ +...+..+|+...+....+.+..
T Consensus 21 G~~~v~~aik~------------gk~~lVI~A~D~s~--~~kkki~~~~~~~~vp--~~~~~t~~eLg~a~Gk~~~~~ia 84 (104)
T PRK05583 21 GYNKCEEAIKK------------KKVYLIIISNDISE--NSKNKFKNYCNKYNIP--YIEGYSKEELGNAIGRDEIKILG 84 (104)
T ss_pred cHHHHHHHHHc------------CCceEEEEeCCCCH--hHHHHHHHHHHHcCCC--EEEecCHHHHHHHhCCCCeEEEE
Confidence 34566666654 57888888875533 3577888888877776 44446678999999988777766
Q ss_pred CCCCCCCccHHHHHHH
Q 016053 364 SQAWGECFGRITIEAM 379 (396)
Q Consensus 364 S~~~~E~fg~~~lEAm 379 (396)
-. .++|.-.+++.+
T Consensus 85 i~--d~g~a~~l~~~~ 98 (104)
T PRK05583 85 VK--DKNMAKKLLKLW 98 (104)
T ss_pred Ee--ChHHHHHHHHHH
Confidence 66 788888887765
No 196
>PLN02562 UDP-glycosyltransferase
Probab=75.30 E-value=27 Score=34.19 Aligned_cols=49 Identities=18% Similarity=0.057 Sum_probs=34.0
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+|+.+.++..+ .++++..++-.+-+. |--++++||+.+|+|+|+....+
T Consensus 328 ~~~~v~~w~PQ-~~iL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~ 376 (448)
T PLN02562 328 KQGKVVSWAPQ-LEVLKHQAVGCYLTH----CGWNSTMEAIQCQKRLLCYPVAG 376 (448)
T ss_pred cCEEEEecCCH-HHHhCCCccceEEec----CcchhHHHHHHcCCCEEeCCccc
Confidence 57777777633 568888776333333 33477899999999999876543
No 197
>PLN02670 transferase, transferring glycosyl groups
Probab=75.21 E-value=26 Score=34.63 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=32.1
Q ss_pred EEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+.+.++..+ .++++..++-.+-+. |--++++||+++|+|+|+-...
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLTH----CGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeeec----CCcchHHHHHHcCCCEEeCcch
Confidence 566677644 468888777333333 3447889999999999997654
No 198
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=75.05 E-value=49 Score=29.20 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=52.5
Q ss_pred EEEEEEecCC--CccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCC-------C-CCCccHHHHHH
Q 016053 309 VHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQA-------W-GECFGRITIEA 378 (396)
Q Consensus 309 ~~l~ivG~g~--~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~-------~-~E~fg~~~lEA 378 (396)
-++.++.... ....+|.+..++..+++|.+ +..+-..++..+.+..+|++.++--. | .-++--.+-|+
T Consensus 32 ~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~--v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~ 109 (233)
T PRK05282 32 RKAVFIPYAGVTQSWDDYTAKVAEALAPLGIE--VTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREA 109 (233)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHHHCCCE--EEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHH
Confidence 4455555433 22244667788888888875 55554446677889999987775320 0 11223346689
Q ss_pred HhcCCCEEEcCCCC
Q 016053 379 MAFQLPVLVLSELH 392 (396)
Q Consensus 379 ma~G~PVI~t~~gG 392 (396)
...|+|++.+..|-
T Consensus 110 ~~~G~~~~G~SAGA 123 (233)
T PRK05282 110 VKNGTPYIGWSAGA 123 (233)
T ss_pred HHCCCEEEEECHHH
Confidence 99999999887663
No 199
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=73.86 E-value=4.9 Score=29.92 Aligned_cols=75 Identities=11% Similarity=0.120 Sum_probs=46.7
Q ss_pred EEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHH--hcCCCEEE
Q 016053 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AFQLPVLV 387 (396)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAm--a~G~PVI~ 387 (396)
-|+++|.|...+ -....+++.+++.|++-.|.-.+. .++.+....+|+++..... .+-..-++.. ..|+||..
T Consensus 6 ILl~C~~G~sSS-~l~~k~~~~~~~~gi~~~v~a~~~-~~~~~~~~~~Dvill~pqi---~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 6 ILLLCAAGMSTS-LLVNKMNKAAEEYGVPVKIAAGSY-GAAGEKLDDADVVLLAPQV---AYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred EEEECCCchhHH-HHHHHHHHHHHHCCCcEEEEEecH-HHHHhhcCCCCEEEECchH---HHHHHHHHHHhhhcCCCEEE
Confidence 367778776543 356788888888888744433332 4566677788998887651 1222234433 34679987
Q ss_pred cC
Q 016053 388 LS 389 (396)
Q Consensus 388 t~ 389 (396)
-+
T Consensus 81 I~ 82 (95)
T TIGR00853 81 IN 82 (95)
T ss_pred eC
Confidence 55
No 200
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=73.47 E-value=9.1 Score=30.96 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=30.4
Q ss_pred cEEEEEeccCCCCCh-HHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|||+++.......|. ...+..+++.+.+.|+++.++-..
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 589999877655454 488888889999999999999743
No 201
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=73.45 E-value=9.8 Score=28.56 Aligned_cols=75 Identities=5% Similarity=0.108 Sum_probs=46.3
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC-cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
++++|.|. .+.-..+.+++.+++.|++ +.+.-. ..++.+....+|+++..... .--+.-.--.+-..|+||..-+
T Consensus 4 ll~C~~Ga-SSs~la~km~~~a~~~gi~--~~i~a~~~~e~~~~~~~~Dvill~PQv-~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 4 LVLCAGGG-TSGLLANALNKGAKERGVP--LEAAAGAYGSHYDMIPDYDLVILAPQM-ASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEECCCCC-CHHHHHHHHHHHHHHCCCc--EEEEEeeHHHHHHhccCCCEEEEcChH-HHHHHHHHHHhhhcCCCEEEeC
Confidence 56667774 3334678899999998886 444433 36788888999998876651 1111111122334578887765
No 202
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=73.17 E-value=20 Score=28.08 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHc-CEEE
Q 016053 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI-DVLV 361 (396)
Q Consensus 283 Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~a-Dv~v 361 (396)
.|....++++++ ...+|+|+....+. .+....+..++++.+++ +.+.+..+++-...... .+-+
T Consensus 33 ~G~~~v~kaikk------------gkakLVilA~D~s~-~~i~~~~~~lc~~~~Vp--~~~~~tk~eLG~a~Gk~~~~sv 97 (122)
T PRK04175 33 KGTNETTKAVER------------GIAKLVVIAEDVDP-EEIVAHLPLLCEEKKIP--YVYVPSKKDLGKAAGLEVGAAA 97 (122)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCCh-HHHHHHHHHHHHHcCCC--EEEECCHHHHHHHhCCCCCeEE
Confidence 466888888875 57888888876522 12457889999999987 78888888899998876 4544
Q ss_pred ecCCCCCCCccHHHHHHH
Q 016053 362 QNSQAWGECFGRITIEAM 379 (396)
Q Consensus 362 ~pS~~~~E~fg~~~lEAm 379 (396)
..-. .+||.-.+++-|
T Consensus 98 vaI~--d~g~a~~~~~~~ 113 (122)
T PRK04175 98 AAIV--DAGKAKELVEDI 113 (122)
T ss_pred EEEe--chhhhHHHHHHH
Confidence 4444 667766655443
No 203
>PRK06988 putative formyltransferase; Provisional
Probab=73.00 E-value=15 Score=34.13 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=45.0
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCch-hhhhhhhhhhhhcceEEEEcCch-----hhhhh
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEED-EVIYSLEHKMWDRGVQVISAKGQ-----ETINT 147 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 147 (396)
||||+|+.. + .+.....+.|.+.|++|..+....+.... ....++.+.....|++++..... ....+
T Consensus 2 ~mkIvf~Gs-----~--~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~ 74 (312)
T PRK06988 2 KPRAVVFAY-----H--NVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVA 74 (312)
T ss_pred CcEEEEEeC-----c--HHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHH
Confidence 368888863 1 35555666677788998766543222111 11123555666778888653221 22345
Q ss_pred ccCCcEEEEcC
Q 016053 148 ALKADLIVLNT 158 (396)
Q Consensus 148 ~~~~DiV~~~~ 158 (396)
..+||++++-.
T Consensus 75 ~~~~Dliv~~~ 85 (312)
T PRK06988 75 AAAPDFIFSFY 85 (312)
T ss_pred hcCCCEEEEeh
Confidence 67899997654
No 204
>PRK07714 hypothetical protein; Provisional
Probab=72.87 E-value=25 Score=26.39 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEe
Q 016053 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQ 362 (396)
Q Consensus 283 Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~ 362 (396)
-|.+..+++++. ...+++|+....+. ...+.+.+.++..+++ +.+.+..+|+-..+......+.
T Consensus 21 ~G~~~v~~al~~------------g~~~lViiA~D~s~--~~~~ki~~~~~~~~vp--~~~~~sk~eLG~a~Gk~~~~~v 84 (100)
T PRK07714 21 SGEELVLKEVRS------------GKAKLVLLSEDASV--NTTKKITDKCTYYNVP--MRKVENRQQLGHAIGKDERVVV 84 (100)
T ss_pred ecHHHHHHHHHh------------CCceEEEEeCCCCH--HHHHHHHHHHHhcCCC--EEEeCCHHHHHHHhCCCcceEE
Confidence 355777777764 46788888765433 3567788888877776 5566767888888887644444
Q ss_pred cCCCCCCCccHHHHHH
Q 016053 363 NSQAWGECFGRITIEA 378 (396)
Q Consensus 363 pS~~~~E~fg~~~lEA 378 (396)
.-. .++|.-.+++.
T Consensus 85 ai~--d~g~a~~l~~~ 98 (100)
T PRK07714 85 AVL--DEGFAKKLRSM 98 (100)
T ss_pred EEe--CchhHHHHHHH
Confidence 444 67777766664
No 205
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.53 E-value=30 Score=33.81 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=48.8
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCC
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (396)
|+.++|+++. +| . .-..+++.|.+.|++|+++...... .. ....+.+...++.++....... ...++
T Consensus 3 ~~~k~v~iiG-----~g-~-~G~~~A~~l~~~G~~V~~~d~~~~~---~~-~~~~~~l~~~~~~~~~~~~~~~--~~~~~ 69 (450)
T PRK14106 3 LKGKKVLVVG-----AG-V-SGLALAKFLKKLGAKVILTDEKEED---QL-KEALEELGELGIELVLGEYPEE--FLEGV 69 (450)
T ss_pred cCCCEEEEEC-----CC-H-HHHHHHHHHHHCCCEEEEEeCCchH---HH-HHHHHHHHhcCCEEEeCCcchh--HhhcC
Confidence 3456776664 23 2 4458999999999999988643211 11 1111233344666554433322 22468
Q ss_pred cEEEEcCc--hhhHHHHHHHhcCCC
Q 016053 152 DLIVLNTA--VAGKWLDAVLKEDVP 174 (396)
Q Consensus 152 DiV~~~~~--~~~~~~~~~~~~~~~ 174 (396)
|+|+.... .....+..+...+++
T Consensus 70 d~vv~~~g~~~~~~~~~~a~~~~i~ 94 (450)
T PRK14106 70 DLVVVSPGVPLDSPPVVQAHKKGIE 94 (450)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCc
Confidence 98876652 333444455554543
No 206
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=72.51 E-value=3.3 Score=37.95 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcC-CCEEEcC
Q 016053 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ-LPVLVLS 389 (396)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G-~PVI~t~ 389 (396)
.+..+.|+.+..++.|.- ...+..-+.|||++| +|||.++
T Consensus 228 ~~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVii~d 268 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVIISD 268 (302)
T ss_pred hHHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEEecC
Confidence 357889999999999877 556889999999999 6777765
No 207
>PLN02173 UDP-glucosyl transferase family protein
Probab=72.46 E-value=22 Score=34.87 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=35.1
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+++.+.++..+ .++++..++-.+-+. |-.++++||+++|+|+|+-..-
T Consensus 317 ~~~~i~~W~PQ-~~iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~~P~~ 364 (449)
T PLN02173 317 DKSLVLKWSPQ-LQVLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVAMPQW 364 (449)
T ss_pred CceEEeCCCCH-HHHhCCCccceEEec----CccchHHHHHHcCCCEEecCch
Confidence 56888888654 468888885444343 4458899999999999987643
No 208
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.24 E-value=18 Score=34.22 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=51.5
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch----h------hh
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----E------TI 145 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~ 145 (396)
-|+|+. +..+|-.+.+..+|.+++++||.+.++|.+... ......+.......+++++-.... . ..
T Consensus 103 VimfVG--LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR--agAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 103 VIMFVG--LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR--AGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred EEEEEe--ccCCCcceeHHHHHHHHHhcCCceeEEeecccc--cchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 466665 444566699999999999999999999965432 122223444445556777654221 0 11
Q ss_pred hhccCCcEEEEcCc
Q 016053 146 NTALKADLIVLNTA 159 (396)
Q Consensus 146 ~~~~~~DiV~~~~~ 159 (396)
.+.+++|+|++.+.
T Consensus 179 fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 179 FKKENFDVIIVDTS 192 (483)
T ss_pred HHhcCCcEEEEeCC
Confidence 24589999998873
No 209
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=72.17 E-value=25 Score=28.93 Aligned_cols=78 Identities=9% Similarity=0.152 Sum_probs=47.3
Q ss_pred CEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCC---ccchHHHHHHHHHHhcCCCCcEEEecC
Q 016053 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN---AQTKFESELRNYVMQKKIQDRVHFVNK 346 (396)
Q Consensus 270 ~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~---~~~~~~~~l~~~~~~~~l~~~V~~~g~ 346 (396)
...|+++|- .+..=...++.+++++ +..+.++++..- .+.+..+..++.+.+.| ..+.+.
T Consensus 2 gl~i~~vGD-~~~rv~~Sl~~~~~~~------------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~-- 64 (158)
T PF00185_consen 2 GLKIAYVGD-GHNRVAHSLIELLAKF------------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITIT-- 64 (158)
T ss_dssp TEEEEEESS-TTSHHHHHHHHHHHHT------------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEE--
T ss_pred CCEEEEECC-CCChHHHHHHHHHHHc------------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEE--
Confidence 467889994 3333344555555543 566899987541 11123444455555554 456665
Q ss_pred cCCHHHHHHHcCEEEecCC
Q 016053 347 TLTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~ 365 (396)
+++.+.+..+||+.....
T Consensus 65 -~~~~e~l~~aDvvy~~~~ 82 (158)
T PF00185_consen 65 -DDIEEALKGADVVYTDRW 82 (158)
T ss_dssp -SSHHHHHTT-SEEEEESS
T ss_pred -eCHHHhcCCCCEEEEcCc
Confidence 788999999999887665
No 210
>PLN02207 UDP-glycosyltransferase
Probab=71.96 E-value=30 Score=34.13 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=32.4
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
++....++..+ .++++...+-.+-+. |--++++||+.+|+|+|+-...+
T Consensus 332 ~~g~i~~W~PQ-~~IL~H~~vg~FvTH----~GwnS~~Eai~~GVP~l~~P~~~ 380 (468)
T PLN02207 332 GRGMICGWSPQ-VEILAHKAVGGFVSH----CGWNSIVESLWFGVPIVTWPMYA 380 (468)
T ss_pred CCeEEEEeCCH-HHHhcccccceeeec----CccccHHHHHHcCCCEEecCccc
Confidence 56666677543 357777766333233 33367899999999999876543
No 211
>PLN00414 glycosyltransferase family protein
Probab=71.28 E-value=37 Score=33.29 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=29.1
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.+|+++- +..-|.-.-+.+|++.|.++|++|++++..
T Consensus 5 ~HVvlvP--fpaqGHi~PmL~LAk~Las~G~~VT~vtt~ 41 (446)
T PLN00414 5 FHAFMYP--WFGFGHMIPYLHLANKLAEKGHRVTFFLPK 41 (446)
T ss_pred CEEEEec--CcccchHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3666665 333577789999999999999999999843
No 212
>PLN02210 UDP-glucosyl transferase
Probab=71.07 E-value=27 Score=34.38 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=28.9
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHH--HHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFL--LRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~--L~~~G~~V~vi~~~ 113 (396)
.+|+++. ...-|.-.-+.+|++. |.++|+.|++++..
T Consensus 9 ~hvv~~P--~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~ 47 (456)
T PLN02210 9 THVLMVT--LAFQGHINPMLKLAKHLSLSSKNLHFTLATTE 47 (456)
T ss_pred CEEEEeC--CcccccHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 3677776 3445777899999999 55899999999954
No 213
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=70.03 E-value=47 Score=32.64 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=32.0
Q ss_pred CcEEEecCcCCHHHHHHHcCE--EEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDV--LVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv--~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+|....++..+ .++++..++ ||. . |--++++||+++|+|+|+....
T Consensus 324 ~~g~v~~w~PQ-~~iL~h~~v~~fvt--H----~G~nS~~Ea~~~GvP~l~~P~~ 371 (451)
T PLN02410 324 GRGYIVKWAPQ-KEVLSHPAVGGFWS--H----CGWNSTLESIGEGVPMICKPFS 371 (451)
T ss_pred CCeEEEccCCH-HHHhCCCccCeeee--c----CchhHHHHHHHcCCCEEecccc
Confidence 56666777643 457877666 552 2 3336889999999999987653
No 214
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=68.81 E-value=13 Score=29.36 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=29.3
Q ss_pred cEEEEEeccCCCCChH-HHHHHHHHHHHhCCCE-EEEEe
Q 016053 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTK-VNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~-V~vi~ 111 (396)
||++++....+.|+.. +...++++++.+.||+ +.|+.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 4788888766665544 8999999999999999 47766
No 215
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=68.79 E-value=22 Score=29.65 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=20.8
Q ss_pred CCCChHHHHHHHHHHH--HhCCCEEEEEeccCC
Q 016053 85 SLSGGPLLLMELAFLL--RGVGTKVNWITIQKP 115 (396)
Q Consensus 85 ~~gG~~~~~~~l~~~L--~~~G~~V~vi~~~~~ 115 (396)
+.||.-..+..|.+.+ ....++..+++....
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~ 38 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDK 38 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCc
Confidence 4477778888888888 224577777774433
No 216
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=68.47 E-value=92 Score=28.14 Aligned_cols=108 Identities=14% Similarity=0.061 Sum_probs=67.0
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCC-------c--cchHHHHHHHHHHhcCCCCcEE
Q 016053 272 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN-------A--QTKFESELRNYVMQKKIQDRVH 342 (396)
Q Consensus 272 ~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~-------~--~~~~~~~l~~~~~~~~l~~~V~ 342 (396)
.++++|- ..-...+.+++.++.+++ -..+++..|.-.+ . ..+....+++..++.|++--..
T Consensus 28 ~~~iaGP-Csie~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te 97 (266)
T PRK13398 28 KIIIAGP-CAVESEEQMVKVAEKLKE---------LGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTE 97 (266)
T ss_pred EEEEEeC-CcCCCHHHHHHHHHHHHH---------cCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEe
Confidence 3444554 566678888888888875 3556777772211 1 1234566888888888872222
Q ss_pred EecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 343 FVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 343 ~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
+.. ..++..+...+|++-.+|.. -+.++ -+-++-..|+||+.++.-.
T Consensus 98 ~~d-~~~~~~l~~~vd~~kIga~~-~~n~~-LL~~~a~~gkPV~lk~G~~ 144 (266)
T PRK13398 98 VMD-TRDVEEVADYADMLQIGSRN-MQNFE-LLKEVGKTKKPILLKRGMS 144 (266)
T ss_pred eCC-hhhHHHHHHhCCEEEECccc-ccCHH-HHHHHhcCCCcEEEeCCCC
Confidence 222 24555555668999999983 33333 2345566799999988744
No 217
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=68.36 E-value=18 Score=32.24 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=25.9
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCC
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 115 (396)
||||+.+...-.. .-+.-|+++|+ .+++|+|+++...
T Consensus 1 mrILlTNDDGi~a---~Gi~aL~~al~-~~~dV~VVAP~~~ 37 (252)
T COG0496 1 MRILLTNDDGIHA---PGIRALARALR-EGADVTVVAPDRE 37 (252)
T ss_pred CeEEEecCCccCC---HHHHHHHHHHh-hCCCEEEEccCCC
Confidence 5888776532221 55777888888 8899999996544
No 218
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=68.34 E-value=31 Score=29.70 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.3
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCC
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 115 (396)
..+|++++...+.||=. +-.++.|...|++|+|+...++
T Consensus 49 ~~~v~vlcG~GnNGGDG---~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 49 ARRVLVLCGPGNNGGDG---LVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred CCEEEEEECCCCccHHH---HHHHHHHHhCCCceEEEEeCCC
Confidence 34799999877777633 3457889999999999985433
No 219
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=68.06 E-value=41 Score=28.98 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=47.5
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+.++|+++. || .....-++.|.+.|.+|+|+++.... .+........+..+.-.... ....++|
T Consensus 8 ~gk~vlVvG-----gG--~va~rk~~~Ll~~ga~VtVvsp~~~~-------~l~~l~~~~~i~~~~~~~~~--~dl~~~~ 71 (205)
T TIGR01470 8 EGRAVLVVG-----GG--DVALRKARLLLKAGAQLRVIAEELES-------ELTLLAEQGGITWLARCFDA--DILEGAF 71 (205)
T ss_pred CCCeEEEEC-----cC--HHHHHHHHHHHHCCCEEEEEcCCCCH-------HHHHHHHcCCEEEEeCCCCH--HHhCCcE
Confidence 446788775 34 56677778888999999999854321 12222222244444332221 2235789
Q ss_pred EEEEcCchh---hHHHHHHHhcCC
Q 016053 153 LIVLNTAVA---GKWLDAVLKEDV 173 (396)
Q Consensus 153 iV~~~~~~~---~~~~~~~~~~~~ 173 (396)
+|++.+... ......+...++
T Consensus 72 lVi~at~d~~ln~~i~~~a~~~~i 95 (205)
T TIGR01470 72 LVIAATDDEELNRRVAHAARARGV 95 (205)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCC
Confidence 998876432 233344444554
No 220
>PRK10494 hypothetical protein; Provisional
Probab=67.78 E-value=49 Score=29.77 Aligned_cols=95 Identities=9% Similarity=-0.009 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc-cchHHHHHHHHHHhcCCCCc-EEEecCc----C---CHHHHHHH
Q 016053 286 DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDR-VHFVNKT----L---TVAPYLAA 356 (396)
Q Consensus 286 ~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~~~l~~~~~~~~l~~~-V~~~g~~----~---~~~~~~~~ 356 (396)
+.+.++++..+ +++..++++-|..... ...+.+.+++.+.++|++.. +..-+.. + ...+++..
T Consensus 107 ~Rl~~a~~L~r--------~~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~ 178 (259)
T PRK10494 107 PRLTEGIRLWR--------ANPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGD 178 (259)
T ss_pred HHHHHHHHHHH--------hCCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCC
Confidence 45555555443 2367888888854322 23355667888889999865 4443431 2 24455555
Q ss_pred cCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 357 IDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 357 aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
.++++.+|. -+++.+...+-..|..|+...++
T Consensus 179 ~~iiLVTsa---~Hm~RA~~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 179 APFLLVTSA---SHLPRAMIFFQQEGLNPLPAPAN 210 (259)
T ss_pred CCEEEECCH---HHHHHHHHHHHHcCCceeecCCc
Confidence 568888875 68888888888899998877653
No 221
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=67.54 E-value=21 Score=31.98 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=33.5
Q ss_pred CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+++.+++..+|+++.-+. .+...-.+..|+..|+|||....|
T Consensus 52 ~dl~~ll~~~DvVid~t~--p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 52 DDLEAVLADADVLIDFTT--PEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CCHHHhccCCCEEEECCC--HHHHHHHHHHHHHcCCCEEEECCC
Confidence 677777878999997777 666666778999999999987544
No 222
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=67.47 E-value=92 Score=27.81 Aligned_cols=85 Identities=8% Similarity=-0.071 Sum_probs=53.6
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC--c-----CCHHHHHHHcCEEEecCCC------CCCCcc-
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--T-----LTVAPYLAAIDVLVQNSQA------WGECFG- 372 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--~-----~~~~~~~~~aDv~v~pS~~------~~E~fg- 372 (396)
++.++.++.........+.+...+..+++|.. .|..+.- . ++..+.+..||++++..-. +...-+
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l 105 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVK-EVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPL 105 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCc-eeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcH
Confidence 56688888754432234556677777888875 3443332 1 3467889999998875321 022333
Q ss_pred -HHHHHHHhcCCCEEEcCCCC
Q 016053 373 -RITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 373 -~~~lEAma~G~PVI~t~~gG 392 (396)
-.+.|+...|+|++.+..|-
T Consensus 106 ~~~l~~~~~~G~vi~G~SAGA 126 (250)
T TIGR02069 106 LDRLRKRVHEGIILGGTSAGA 126 (250)
T ss_pred HHHHHHHHHcCCeEEEccHHH
Confidence 34668899999988887664
No 223
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=67.34 E-value=31 Score=34.17 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=33.7
Q ss_pred cEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 340 RVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 340 ~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
++.+.++..+ .++++...+-.+-+ -|--++++||+.+|+|+|+-...+
T Consensus 339 g~vv~~W~PQ-~~iL~h~~vg~Fit----H~G~nS~~Eal~~GVP~l~~P~~~ 386 (481)
T PLN02992 339 GFVVPSWAPQ-AEILAHQAVGGFLT----HCGWSSTLESVVGGVPMIAWPLFA 386 (481)
T ss_pred CEEEeecCCH-HHHhCCcccCeeEe----cCchhHHHHHHHcCCCEEecCccc
Confidence 5777777644 46888888733323 344478899999999999976543
No 224
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.14 E-value=1.1e+02 Score=29.00 Aligned_cols=112 Identities=8% Similarity=0.017 Sum_probs=69.1
Q ss_pred CCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHhcCCC
Q 016053 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQ 338 (396)
Q Consensus 268 ~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~---------~~~~~~~l~~~~~~~~l~ 338 (396)
.++..++++| -..-.+-+.+++.++.+++ ...+++--|.-.++ ..+-.+.+.+..++.|++
T Consensus 98 g~~~l~vIAG-PCsIEs~eq~l~~A~~lk~---------~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~ 167 (352)
T PRK13396 98 ENHPVVVVAG-PCSVENEEMIVETAKRVKA---------AGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG 167 (352)
T ss_pred CCCeEEEEEe-CCcccCHHHHHHHHHHHHH---------cCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc
Confidence 3444556666 3667777888888888765 35555555533221 123355666777788876
Q ss_pred CcEEEec-CcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCC
Q 016053 339 DRVHFVN-KTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHP 393 (396)
Q Consensus 339 ~~V~~~g-~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~ 393 (396)
+.--. ..+++..+...+|++=.+|+. -..|++ +-++...|+||+.++.-.+
T Consensus 168 --~~tev~d~~~v~~~~~~~d~lqIga~~-~~n~~L-L~~va~t~kPVllk~G~~~ 219 (352)
T PRK13396 168 --IITEVMDAADLEKIAEVADVIQVGARN-MQNFSL-LKKVGAQDKPVLLKRGMAA 219 (352)
T ss_pred --EEEeeCCHHHHHHHHhhCCeEEECccc-ccCHHH-HHHHHccCCeEEEeCCCCC
Confidence 22222 235566666669999999983 444443 3344578999999876554
No 225
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=66.92 E-value=21 Score=35.51 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=27.4
Q ss_pred EEEEEeccCCCCCh-------HHHHHHHHHHHHhCC-CEEEEEe
Q 016053 76 LVLLVSHELSLSGG-------PLLLMELAFLLRGVG-TKVNWIT 111 (396)
Q Consensus 76 kIl~v~~~~~~gG~-------~~~~~~l~~~L~~~G-~~V~vi~ 111 (396)
||++|++....+|. +.-+..++..|++.| |+|.++-
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD 44 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLD 44 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEec
Confidence 58888876654443 245778888899999 8999985
No 226
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=66.69 E-value=24 Score=24.85 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccCC---CCchhhhhhhhhhhhhcceEEEEcCchh
Q 016053 90 PLLLMELAFLLRGVGTKVNWITIQKP---SEEDEVIYSLEHKMWDRGVQVISAKGQE 143 (396)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~vi~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (396)
...-.+++..|.+.|.+|+++...+. ..+......+.+.+...|+++.......
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~ 64 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVK 64 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEE
T ss_pred CHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 37888999999999999999984432 1233344445566777788886554433
No 227
>PLN02208 glycosyltransferase family protein
Probab=66.32 E-value=47 Score=32.51 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=29.5
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.+|+++- +..-|.-.-+.++++.|.++|++|++++..
T Consensus 5 ~hvv~~P--~paqGHi~P~l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 5 FHAFMFP--WFAFGHMIPFLHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred CEEEEec--CccccHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 3666665 334677899999999999999999999943
No 228
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=66.17 E-value=12 Score=27.79 Aligned_cols=74 Identities=15% Similarity=0.321 Sum_probs=46.6
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHH--HHhcCCCEEEc
Q 016053 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE--AMAFQLPVLVL 388 (396)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lE--Ama~G~PVI~t 388 (396)
++++|.|...+- ..+.+++.+++.|++-.|...+. .++......+|+++..... .+-..-++ +.-.++||..-
T Consensus 3 l~~Cg~G~sTS~-~~~ki~~~~~~~~~~~~v~~~~~-~~~~~~~~~~Diil~~Pqv---~~~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 3 LLVCSAGMSTSI-LVKKMKKAAEKRGIDAEIEAVPE-SELEEYIDDADVVLLGPQV---RYMLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred EEEcCCCchHHH-HHHHHHHHHHHCCCceEEEEecH-HHHHHhcCCCCEEEEChhH---HHHHHHHHHHhccCCCcEEEc
Confidence 677888875543 56688888888888744444432 4566677888988876651 11222233 34567888765
Q ss_pred C
Q 016053 389 S 389 (396)
Q Consensus 389 ~ 389 (396)
+
T Consensus 78 ~ 78 (96)
T cd05564 78 D 78 (96)
T ss_pred C
Confidence 4
No 229
>PLN02764 glycosyltransferase family protein
Probab=66.08 E-value=44 Score=32.79 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=28.1
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
++|+++- +..-|.-.-+.+|++.|..+|+.|++++..
T Consensus 6 ~Hvvl~P--~paqGHi~P~l~LAk~La~~g~~vT~~tt~ 42 (453)
T PLN02764 6 FHVLMYP--WFATGHMTPFLFLANKLAEKGHTVTFLLPK 42 (453)
T ss_pred cEEEEEC--CcccccHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 3666655 233477788999999999999999999844
No 230
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=66.02 E-value=13 Score=26.94 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=37.6
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCC
Q 016053 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (396)
++++|.|...+.-....+++.+++.|++-.+.... ..+...+...+|+++....
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~-~~~~~~~~~~~D~il~~~~ 56 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS-ILEVEEIADDADLILLTPQ 56 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE-TTTHHHHHTT-SEEEEEES
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEec-ccccccccCCCcEEEEcCc
Confidence 57788886444434478999999998764444444 5677778888999988766
No 231
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=65.50 E-value=25 Score=28.92 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=29.1
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
.++|+++.. +-.+....++..+...|.++.++++.+
T Consensus 2 gl~i~~vGD-----~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVGD-----GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEESS-----TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEECC-----CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 457888872 224899999999999999999998765
No 232
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=65.40 E-value=55 Score=27.71 Aligned_cols=58 Identities=28% Similarity=0.255 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhh-----ccCCcEEEEcCch
Q 016053 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT-----ALKADLIVLNTAV 160 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~DiV~~~~~~ 160 (396)
+.-..+++++..+|++|++++.... +. ...++.++.......+.. ..+.|+++.....
T Consensus 30 ~~G~~lA~~~~~~Ga~V~li~g~~~---------~~---~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAV 92 (185)
T PF04127_consen 30 KMGAALAEEAARRGAEVTLIHGPSS---------LP---PPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAV 92 (185)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB-
T ss_pred HHHHHHHHHHHHCCCEEEEEecCcc---------cc---ccccceEEEecchhhhhhhhccccCcceeEEEecch
Confidence 8889999999999999999995532 11 123666766665543332 2445887766443
No 233
>PLN02327 CTP synthase
Probab=65.00 E-value=1.6e+02 Score=29.66 Aligned_cols=170 Identities=11% Similarity=-0.012 Sum_probs=93.1
Q ss_pred ccccceeeccccH-HHHHHHHHhhhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEeccc
Q 016053 202 LVAGAMIDSHVTA-EYWKNRTRERLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVS 280 (396)
Q Consensus 202 ~~~~~~~~s~~~~-~~~~~~~~~~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~ 280 (396)
..|-++|.|...- +..++++....+++.+.+.-.+ |.+.....|....++.-.+.+.++++++. +.
T Consensus 210 ~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~Vi~~~---d~~~iY~vPl~l~~q~l~~~i~~~l~l~~----------~~ 276 (557)
T PLN02327 210 TPHILACRSTKPLEENVKEKLSQFCHVPAENILNLH---DVSNIWHVPLLLRDQKAHEAILKVLNLLS----------VA 276 (557)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHhcCCCHHHEEEcC---CCchHhhhhHHHHHCCcHHHHHHHcCCCC----------CC
Confidence 4566666665433 4455555544566665544444 44444333433333444566788888752 01
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHH---HHhcCCCCcEEEecCc--CC------
Q 016053 281 RGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNY---VMQKKIQDRVHFVNKT--LT------ 349 (396)
Q Consensus 281 ~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~---~~~~~l~~~V~~~g~~--~~------ 349 (396)
+..++....+.+..+.+ -...+++-+||+-.+....|..-.+.+ ...++..-++.++... ++
T Consensus 277 ~~~~~~~W~~~~~~~~~-------~~~~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~ 349 (557)
T PLN02327 277 REPDLEEWTARAESCDN-------LTEPVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKET 349 (557)
T ss_pred CCCChHHHHHHHHHHhC-------CCCceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccc
Confidence 22333333333333221 113689999998765444455444433 4456666677777652 21
Q ss_pred ------HHHHHHHcCEEEecCCC---CCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 350 ------VAPYLAAIDVLVQNSQA---WGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 350 ------~~~~~~~aDv~v~pS~~---~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+.+.+..+|-+++|.-+ -.|+.-..+-.|...|+|+++.-.|
T Consensus 350 ~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 350 PDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred cchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 33678999999988652 0133333445566679999876543
No 234
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=64.82 E-value=60 Score=24.68 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=48.8
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH--HcCEEEecCCCCCCCccHHHHHHHhcCCC
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLP 384 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~--~aDv~v~pS~~~~E~fg~~~lEAma~G~P 384 (396)
++++++-+=+. ..+..++..++++.+ ..+++.++++ ..|+++..+. .+.-.-.+.+++..|++
T Consensus 24 ~~~~v~~v~d~------~~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~D~V~I~tp--~~~h~~~~~~~l~~g~~ 88 (120)
T PF01408_consen 24 PDFEVVAVCDP------DPERAEAFAEKYGIP-------VYTDLEELLADEDVDAVIIATP--PSSHAEIAKKALEAGKH 88 (120)
T ss_dssp TTEEEEEEECS------SHHHHHHHHHHTTSE-------EESSHHHHHHHTTESEEEEESS--GGGHHHHHHHHHHTTSE
T ss_pred CCcEEEEEEeC------CHHHHHHHHHHhccc-------chhHHHHHHHhhcCCEEEEecC--CcchHHHHHHHHHcCCE
Confidence 57776633332 345566667777765 2356888888 6788888777 66666778999999999
Q ss_pred EEEcCCC
Q 016053 385 VLVLSEL 391 (396)
Q Consensus 385 VI~t~~g 391 (396)
|++-.-.
T Consensus 89 v~~EKP~ 95 (120)
T PF01408_consen 89 VLVEKPL 95 (120)
T ss_dssp EEEESSS
T ss_pred EEEEcCC
Confidence 9875433
No 235
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=64.50 E-value=44 Score=32.85 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=34.4
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
++..+.++..+ .++++..++-.+-+. +-.++++||+.+|+|+|+-...
T Consensus 327 ~~g~v~~W~PQ-~~iL~h~~vg~fvtH----~G~nS~~Ea~~~GvP~l~~P~~ 374 (455)
T PLN02152 327 EVGMIVSWCSQ-IEVLRHRAVGCFVTH----CGWSSSLESLVLGVPVVAFPMW 374 (455)
T ss_pred CCeEEEeeCCH-HHHhCCcccceEEee----CCcccHHHHHHcCCCEEecccc
Confidence 56677777654 468888887444343 3447889999999999987654
No 236
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=64.25 E-value=23 Score=30.43 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=43.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCC--CEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcC--ch--------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVG--TKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--GQ-------- 142 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G--~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------- 142 (396)
|||+++.+ |....+..+.+++.+.+ ++|.++....+.. .........|++++... ..
T Consensus 2 ~ki~vl~s-----g~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~------~~~~~a~~~gIp~~~~~~~~~~~~~~~~~ 70 (200)
T PRK05647 2 KRIVVLAS-----GNGSNLQAIIDACAAGQLPAEIVAVISDRPDA------YGLERAEAAGIPTFVLDHKDFPSREAFDA 70 (200)
T ss_pred ceEEEEEc-----CCChhHHHHHHHHHcCCCCcEEEEEEecCccc------hHHHHHHHcCCCEEEECccccCchhHhHH
Confidence 68888883 33467778888888865 6666544332211 13345566788776522 11
Q ss_pred --hhhhhccCCcEEEEcC
Q 016053 143 --ETINTALKADLIVLNT 158 (396)
Q Consensus 143 --~~~~~~~~~DiV~~~~ 158 (396)
....+..++|++++..
T Consensus 71 ~~~~~l~~~~~D~iv~~~ 88 (200)
T PRK05647 71 ALVEALDAYQPDLVVLAG 88 (200)
T ss_pred HHHHHHHHhCcCEEEhHH
Confidence 1223457899998754
No 237
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=64.01 E-value=89 Score=27.69 Aligned_cols=82 Identities=6% Similarity=0.026 Sum_probs=56.5
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc-----CC---HHHHHHHcCEEEecCCCCCCCccHHHHHH
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----LT---VAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-----~~---~~~~~~~aDv~v~pS~~~~E~fg~~~lEA 378 (396)
+.-++++-|+....+.++.+.+++...+.|+++.-+++.+. ++ ..+++..-++.|.+|. -+.+.++.-|
T Consensus 81 k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~~~~~~iIVTq~---fHm~RA~~ia 157 (239)
T PRK10834 81 KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQR---FHCERALFIA 157 (239)
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHhCCCCEEEECCH---HHHHHHHHHH
Confidence 45567777765433445666788899999999877777653 22 3344444456676664 6788999989
Q ss_pred HhcCCCEEEcCCC
Q 016053 379 MAFQLPVLVLSEL 391 (396)
Q Consensus 379 ma~G~PVI~t~~g 391 (396)
-..|..+++....
T Consensus 158 ~~~Gi~~~~~~a~ 170 (239)
T PRK10834 158 LHMGIQAQCYAVP 170 (239)
T ss_pred HHcCCceEEEeCC
Confidence 9999998876544
No 238
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=63.95 E-value=64 Score=27.74 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=60.6
Q ss_pred EEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHH------HHHHcCEEEecCCCCCCCccHHHHHHHhc
Q 016053 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAP------YLAAIDVLVQNSQAWGECFGRITIEAMAF 381 (396)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~------~~~~aDv~v~pS~~~~E~fg~~~lEAma~ 381 (396)
.|++-|+....+..+...+++...+.|++...+++.+- ..+.. .+..-++.+. |. .-+...++.=|+..
T Consensus 96 ~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftII-tQ--~FHceRAlfiA~~~ 172 (235)
T COG2949 96 YLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTII-TQ--RFHCERALFIARQM 172 (235)
T ss_pred EEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEE-ec--ccccHHHHHHHHHh
Confidence 46677777666655667788888899999877777652 33344 4444455554 55 56788999999999
Q ss_pred CCCEEEcCCCCCCC
Q 016053 382 QLPVLVLSELHPSI 395 (396)
Q Consensus 382 G~PVI~t~~gG~~~ 395 (396)
|+--++.+.+++..
T Consensus 173 gIdAic~~ap~p~~ 186 (235)
T COG2949 173 GIDAICFAAPDPEG 186 (235)
T ss_pred CCceEEecCCCccc
Confidence 99999999988763
No 239
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=63.76 E-value=17 Score=33.29 Aligned_cols=42 Identities=14% Similarity=-0.108 Sum_probs=30.2
Q ss_pred ccccEEEEEeccCCC-CChH-HHHHHHHHHHHhCCCEEEEEecc
Q 016053 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 72 m~~~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
||+++|++++...+. -... .....+.++|++.||+|.++...
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 455689988854333 2222 46689999999999999998633
No 240
>PRK06849 hypothetical protein; Provisional
Probab=63.39 E-value=25 Score=33.71 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=27.3
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
++|+||++. |.......+++.|.+.|++|+++...
T Consensus 3 ~~~~VLI~G------~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITG------ARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeC------CCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456888775 33346889999999999999998754
No 241
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=63.07 E-value=1.3e+02 Score=29.02 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=65.7
Q ss_pred HHHHHHHcC-C-----CCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHH
Q 016053 257 REHVRESLG-V-----RNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRN 330 (396)
Q Consensus 257 ~~~~r~~~g-~-----~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~ 330 (396)
+..+.+++| . ++...+-+...++....-..-+++++++ ++|++.+++--..+. -.+..+
T Consensus 31 ~~r~~eRfg~~~~~~~~~~p~vWiHaaSVGEv~a~~pLv~~l~~----------~~P~~~ilvTt~T~T----g~e~a~- 95 (419)
T COG1519 31 RKRLGERFGFYKPPVKPEGPLVWIHAASVGEVLAALPLVRALRE----------RFPDLRILVTTMTPT----GAERAA- 95 (419)
T ss_pred HHHHHHHhcccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHHH----------hCCCCCEEEEecCcc----HHHHHH-
Confidence 444555555 2 1234566666776555555555555544 458999888775541 223323
Q ss_pred HHHhcCCCCcEEEecCc--CCHHHHHH--HcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 331 YVMQKKIQDRVHFVNKT--LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 331 ~~~~~~l~~~V~~~g~~--~~~~~~~~--~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
+.++-.-.+.+++.- .-+..+++ +-|++|+ .- .|-||+.+.|+-..|+|.+--|
T Consensus 96 --~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii-~E--tElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 96 --ALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLII-ME--TELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred --HHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEE-Ee--ccccHHHHHHHHHcCCCEEEEe
Confidence 223322233444431 23444543 4567766 34 7999999999999999998765
No 242
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=62.97 E-value=17 Score=29.21 Aligned_cols=82 Identities=12% Similarity=0.021 Sum_probs=41.5
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhh--ccCC
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINT--ALKA 151 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 151 (396)
++|||||+....- -......+++.+...+++|.-..... ...........+.+.+.|+++-. ...+.+.. ..++
T Consensus 2 ~~kVLFVC~gN~c--RSpmAE~l~~~~~~~~~~v~SAGt~~-~~g~~~~~~a~~vl~e~Gid~~~-~~~k~i~~~~~~~~ 77 (139)
T COG0394 2 MMKVLFVCTGNIC--RSPMAEALLRHLAPDNVEVDSAGTGG-HPGEPPDPRAVEVLAEHGIDISG-HRSKQLTEEDFDEF 77 (139)
T ss_pred CceEEEEcCCCcc--cCHHHHHHHHHhccCCeEEECCccCC-CCCCCCCHHHHHHHHHcCCCcCC-ccCccCchhhhhhC
Confidence 5699999964332 22566666666665444444333211 11111222233445566766643 22223332 2579
Q ss_pred cEEEEcCc
Q 016053 152 DLIVLNTA 159 (396)
Q Consensus 152 DiV~~~~~ 159 (396)
|+|++-+.
T Consensus 78 DlIitmd~ 85 (139)
T COG0394 78 DLIITMDE 85 (139)
T ss_pred CEEEEeCh
Confidence 99988663
No 243
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=62.93 E-value=13 Score=37.08 Aligned_cols=37 Identities=16% Similarity=-0.002 Sum_probs=28.2
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
||+.+.+.. ....-..+..+++.|.++||+|+++++.
T Consensus 22 kIl~~~P~~-~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 22 RILAVFPTP-AYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred cEEEEcCCC-CCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 577776532 1233489999999999999999999853
No 244
>PLN00164 glucosyltransferase; Provisional
Probab=62.48 E-value=57 Score=32.32 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=30.3
Q ss_pred EEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCC
Q 016053 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSE 390 (396)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~ 390 (396)
+...++..+ .++++..++-.+-+. |--++++||+++|+|+|+-..
T Consensus 341 ~~v~~w~PQ-~~iL~h~~vg~fvtH----~GwnS~~Eai~~GVP~l~~P~ 385 (480)
T PLN00164 341 LVWPTWAPQ-KEILAHAAVGGFVTH----CGWNSVLESLWHGVPMAPWPL 385 (480)
T ss_pred eEEeecCCH-HHHhcCcccCeEEee----cccchHHHHHHcCCCEEeCCc
Confidence 555566533 468888886333233 233688999999999998654
No 245
>PRK13054 lipid kinase; Reviewed
Probab=62.15 E-value=22 Score=32.63 Aligned_cols=42 Identities=26% Similarity=0.165 Sum_probs=30.0
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCC
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 115 (396)
|+||++++|.+ ..+|+.+.+.++...|.+.|+++.+.....+
T Consensus 1 ~~~~~~~~i~N--~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~ 42 (300)
T PRK13054 1 MTFPKSLLILN--GKSAGNEELREAVGLLREEGHTLHVRVTWEK 42 (300)
T ss_pred CCCceEEEEEC--CCccchHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 45677777765 2244557788888899999999888665443
No 246
>PRK07283 hypothetical protein; Provisional
Probab=62.00 E-value=36 Score=25.38 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=43.9
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHH
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEA 378 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEA 378 (396)
...+++|+....+. ...+.+.+.++.++++ +......+|+-..+..- ..|+.-. .+||.-.+++.
T Consensus 33 gk~~lVi~A~Das~--~~~kk~~~~~~~~~Vp--~~~~~t~~eLG~a~Gk~-~~vvai~--d~g~a~~l~~~ 97 (98)
T PRK07283 33 GQAKLVFLANDAGP--NLTKKVTDKSNYYQVE--VSTVFSTLELSAAVGKP-RKVLAVT--DAGFSKKMRSL 97 (98)
T ss_pred CCccEEEEeCCCCH--HHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCC-ceEEEEe--ChhHHHHHHHh
Confidence 46788888875422 3566777888877766 44444557888888874 4444445 78888887764
No 247
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=61.33 E-value=18 Score=28.55 Aligned_cols=36 Identities=22% Similarity=0.100 Sum_probs=24.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|||++.... +++.....++++.|++.|++|.++..+
T Consensus 1 k~i~l~vtG---s~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTG---SIAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-S---SGGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEEC---HHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 466666531 122244899999999999999998854
No 248
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=61.10 E-value=21 Score=30.60 Aligned_cols=38 Identities=18% Similarity=-0.032 Sum_probs=27.1
Q ss_pred cccEEEEEeccCCCCChH-HH-HHHHHHHHHhCCCEEEEEeccC
Q 016053 73 KSKLVLLVSHELSLSGGP-LL-LMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~-~~-~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
+.|||++... ||.. .. ..++++.|.+.|++|.++..+.
T Consensus 4 ~~k~IllgVT----Gsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLT----GSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEc----CHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 4567766542 3333 44 5899999999999999988543
No 249
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=61.03 E-value=52 Score=25.51 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHc-CEEE
Q 016053 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI-DVLV 361 (396)
Q Consensus 283 Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~a-Dv~v 361 (396)
.|....+++++. ...+|+|+....+. .+....+..++++.+++ +.+.+..+++-...... .+-+
T Consensus 29 ~G~~~v~kaikk------------gka~LVilA~D~s~-~~~~~~i~~lc~~~~Ip--~~~~~sk~eLG~a~Gk~~~~sv 93 (117)
T TIGR03677 29 KGTNEVTKAVER------------GIAKLVVIAEDVEP-PEIVAHLPALCEEKGIP--YVYVKKKEDLGAAAGLEVGAAS 93 (117)
T ss_pred EcHHHHHHHHHc------------CCccEEEEeCCCCc-HHHHHHHHHHHHHcCCC--EEEeCCHHHHHHHhCCCCCeEE
Confidence 466777877764 56888888765422 12468899999999987 78888888898888873 4544
Q ss_pred ecCCCCCCCccHHHHHH
Q 016053 362 QNSQAWGECFGRITIEA 378 (396)
Q Consensus 362 ~pS~~~~E~fg~~~lEA 378 (396)
+.-. .+||.-.++.-
T Consensus 94 vaI~--d~g~a~~~~~~ 108 (117)
T TIGR03677 94 AAIV--DEGKAEELLKE 108 (117)
T ss_pred EEEE--chhhhHHHHHH
Confidence 4445 67777665543
No 250
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=61.00 E-value=55 Score=28.52 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=51.9
Q ss_pred CCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcC
Q 016053 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (396)
Q Consensus 269 ~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (396)
..-+|+|+|+ ..+.+.+++..++ +..+ +...+-. .|+-..........+.. +.+.+++...|..-..
T Consensus 107 r~GiILFv~t---n~~~~~~ve~aA~---r~~g----y~~~~~w-~~G~lTN~~~l~g~~~~--~~~~~pd~~~f~~t~~ 173 (251)
T KOG0832|consen 107 RGGIILFVGT---NNGFKDLVERAAR---RAGG----YSHNRKW-LGGLLTNARELFGALVR--KFLSLPDALCFLPTLT 173 (251)
T ss_pred cCCeEEEEec---CcchHHHHHHHHH---HhcC----ceeeeee-ccceeecchhhcccccc--cccCCCcceeecccCC
Confidence 4457889998 4566666666654 2222 1233333 34332111111111111 2233556666655432
Q ss_pred CHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEE
Q 016053 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLV 387 (396)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~ 387 (396)
. |++|.-.. .|.. .+++||.-+++|+|+
T Consensus 174 ~--------D~vvvln~--~e~~-sAilEA~K~~IPTIg 201 (251)
T KOG0832|consen 174 P--------DLVVVLNP--EENH-SAILEAAKMAIPTIG 201 (251)
T ss_pred c--------ceeEecCc--cccc-HHHHHHHHhCCCeEE
Confidence 2 88887666 4544 568999999999987
No 251
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=60.86 E-value=15 Score=30.18 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=26.1
Q ss_pred HHHHHHH-cCEEEecCCC--CCC--CccHHHHHHHhcCCCEEEc
Q 016053 350 VAPYLAA-IDVLVQNSQA--WGE--CFGRITIEAMAFQLPVLVL 388 (396)
Q Consensus 350 ~~~~~~~-aDv~v~pS~~--~~E--~fg~~~lEAma~G~PVI~t 388 (396)
+...+.. +|++|+.-.. ..| ||--.+.||++.|+||++.
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 3334444 7999886332 233 4445688999999999986
No 252
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=60.55 E-value=29 Score=28.91 Aligned_cols=52 Identities=10% Similarity=0.211 Sum_probs=38.3
Q ss_pred CCEEEEEEecCCCccchH-HHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHHcCEEEecCC
Q 016053 307 PSVHAVIIGSDMNAQTKF-ESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~-~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~v~pS~ 365 (396)
.+-+.+|+|.|. . ...+.+...+.|. +|...... +++.+.+..||++|....
T Consensus 43 ~gk~vlViG~G~-----~~G~~~a~~L~~~g~--~V~v~~r~~~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGRSN-----IVGKPLAALLLNRNA--TVTVCHSKTKNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECCcH-----HHHHHHHHHHhhCCC--EEEEEECCchhHHHHHhhCCEEEEcCC
Confidence 567999999983 3 3335555555553 57777775 789999999999998766
No 253
>PF14118 YfzA: YfzA-like protein
Probab=60.12 E-value=15 Score=26.98 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=21.3
Q ss_pred CCCcCCCcccccccchHHHHHHHHHHHHHHHHHH
Q 016053 1 MGKHSATGWWVPLTKRWILALLIMLSISTAIAFF 34 (396)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (396)
|++..-|-| +++|...++.|+++=+++..+
T Consensus 1 ~~~~~~P~~----kk~W~~~L~iF~i~QLlFi~~ 30 (94)
T PF14118_consen 1 MTNKKQPIR----KKRWFITLGIFLIVQLLFIIF 30 (94)
T ss_pred CCcccCchh----hhhHHHHHHHHHHHHHHHHHh
Confidence 666554554 788999998888876665544
No 254
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=60.10 E-value=1.7e+02 Score=28.19 Aligned_cols=141 Identities=11% Similarity=0.184 Sum_probs=76.4
Q ss_pred hhcccCCCEEEEecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCC---C---HHHHHHHHHHHHH
Q 016053 224 RLRIKMPDTYVVHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGK---G---QDLFLHSFYESLE 297 (396)
Q Consensus 224 ~~g~~~~k~~vI~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~K---g---~~~li~a~~~l~~ 297 (396)
.+++...++.....+-....+..... ..........++++.++.+|+|.-.+.+.. | ....+ ...++.+
T Consensus 166 ~f~~~~~~i~~~G~Pr~D~~~~~~~~----~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~-~~~~~~~ 240 (388)
T COG1887 166 AFNIDKENILETGYPRNDKLFDEAGK----TEDILLIQLALPLPQDKKVILYAPTFRDNDVLIGTQFFNLDI-DIEKLKE 240 (388)
T ss_pred HhcccccceeecCcccchhhhhhccc----hhhhHHHhhhcCCcccCceEEecCCccCCccccchhhhhhhh-hHHHHHH
Confidence 56776665555444433223322111 111222455667777899999998877765 2 22222 2222223
Q ss_pred HHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHH
Q 016053 298 LIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (396)
Q Consensus 298 ~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lE 377 (396)
.+.+ .++.+++-=.-. ....+...- ...+.+..+-.-.++.++|..+|++|-= ++.+..|
T Consensus 241 ~l~~-----~~~~ii~k~Hp~-----is~~~~~~~---~~~~~~~~vs~~~di~dll~~sDiLITD-------ySSv~fd 300 (388)
T COG1887 241 KLGE-----NEYVIIVKPHPL-----ISDKIDKRY---ALDDFVLDVSDNADINDLLLVSDILITD-------YSSVIFD 300 (388)
T ss_pred hhcc-----CCeEEEEecChh-----hhhhhhhhh---hccceeEecccchhHHHHHhhhCEEEee-------chHHHHH
Confidence 3322 355555544321 111111110 1123344444456899999999999942 4578999
Q ss_pred HHhcCCCEEEcC
Q 016053 378 AMAFQLPVLVLS 389 (396)
Q Consensus 378 Ama~G~PVI~t~ 389 (396)
+|...+|||-.-
T Consensus 301 f~~l~KPiify~ 312 (388)
T COG1887 301 FMLLDKPIIFYT 312 (388)
T ss_pred HHHhcCcEEEEe
Confidence 999999999753
No 255
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=60.04 E-value=18 Score=28.18 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=23.5
Q ss_pred cEEEEEeccCC---CCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELS---LSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~---~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|||+|+..... +.+ -....|+.+.+++||+|.++..+
T Consensus 1 Mki~fvmDpi~~i~~~k--DTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYK--DTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT---HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCC--ChHHHHHHHHHHCCCEEEEEEcC
Confidence 58999986532 222 35666777888999999999854
No 256
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=59.80 E-value=26 Score=34.13 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=43.7
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe-ccCCCCchhhhhhhhhhhhh--cceEEEEcCchhhhhhccC
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWD--RGVQVISAKGQETINTALK 150 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 150 (396)
+||||++.. || +-..|+..|++.++-..+++ +..+. ....... ..+..........+.+..+
T Consensus 4 ~~kvLviG~----g~---rehal~~~~~~~~~~~~~~~~pgn~g--------~~~~~~~~~~~~~~~d~~~l~~~a~~~~ 68 (426)
T PRK13789 4 KLKVLLIGS----GG---RESAIAFALRKSNLLSELKVFPGNGG--------FPDDELLPADSFSILDKSSVQSFLKSNP 68 (426)
T ss_pred CcEEEEECC----CH---HHHHHHHHHHhCCCCCEEEEECCchH--------HhccccccccCcCcCCHHHHHHHHHHcC
Confidence 479999983 33 56677888888875555555 33221 1100000 0112222223334556678
Q ss_pred CcEEEEcC--chhhHHHHHHHhcCCCc
Q 016053 151 ADLIVLNT--AVAGKWLDAVLKEDVPR 175 (396)
Q Consensus 151 ~DiV~~~~--~~~~~~~~~~~~~~~~~ 175 (396)
+|+|++.. +........+.+.++|.
T Consensus 69 iD~Vv~g~E~~l~~glad~~~~~Gip~ 95 (426)
T PRK13789 69 FDLIVVGPEDPLVAGFADWAAELGIPC 95 (426)
T ss_pred CCEEEECCchHHHHHHHHHHHHcCCCc
Confidence 99998753 22222333344456554
No 257
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=59.64 E-value=56 Score=26.10 Aligned_cols=62 Identities=21% Similarity=0.127 Sum_probs=0.0
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCC
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (396)
|++++|++.+ ....+.+.=..-++..|+..||+|+.+-..-+ .++... .....++
T Consensus 1 ~~~~~vl~~~--~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp---------~e~i~~--------------~a~~~~~ 55 (137)
T PRK02261 1 MKKKTVVLGV--IGADCHAVGNKILDRALTEAGFEVINLGVMTS---------QEEFID--------------AAIETDA 55 (137)
T ss_pred CCCCEEEEEe--CCCChhHHHHHHHHHHHHHCCCEEEECCCCCC---------HHHHHH--------------HHHHcCC
Q ss_pred cEEEEcC
Q 016053 152 DLIVLNT 158 (396)
Q Consensus 152 DiV~~~~ 158 (396)
|+|-...
T Consensus 56 d~V~lS~ 62 (137)
T PRK02261 56 DAILVSS 62 (137)
T ss_pred CEEEEcC
No 258
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=58.93 E-value=23 Score=30.26 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=29.5
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
+|++.+++.-...|-.....+|+.+|++.|++|.++-.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 46666665554556668999999999999999988863
No 259
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=58.42 E-value=63 Score=28.57 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=23.0
Q ss_pred cccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 71 ~m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
++..++||+|..-.. -.+...--.+..+.++|++|.+++.
T Consensus 7 ~~~~~~vL~v~aHPD--De~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 7 MLDPLRVLVVFAHPD--DEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cccCCcEEEEecCCc--chhhccHHHHHHHHHCCCeEEEEEc
Confidence 444568888874211 1111112224445889999999983
No 260
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=57.92 E-value=59 Score=29.15 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=46.0
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhc-ceEEEEc----Cchhhhhhcc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDR-GVQVISA----KGQETINTAL 149 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~ 149 (396)
|+|+++. |.. .-..+++.|.+.||+|.+.+..... ...+... +..+..- .....+....
T Consensus 1 m~ILvlG------GT~-egr~la~~L~~~g~~v~~s~~t~~~---------~~~~~~~g~~~v~~g~l~~~~l~~~l~~~ 64 (256)
T TIGR00715 1 MTVLLMG------GTV-DSRAIAKGLIAQGIEILVTVTTSEG---------KHLYPIHQALTVHTGALDPQELREFLKRH 64 (256)
T ss_pred CeEEEEe------chH-HHHHHHHHHHhCCCeEEEEEccCCc---------cccccccCCceEEECCCCHHHHHHHHHhc
Confidence 3666654 433 3788999999999999988744321 0111111 2223211 1223455668
Q ss_pred CCcEEEEcC-chhhH----HHHHHHhcCCCc
Q 016053 150 KADLIVLNT-AVAGK----WLDAVLKEDVPR 175 (396)
Q Consensus 150 ~~DiV~~~~-~~~~~----~~~~~~~~~~~~ 175 (396)
++|+|+--+ |.+.. ....+...++|+
T Consensus 65 ~i~~VIDAtHPfA~~is~~a~~a~~~~~ipy 95 (256)
T TIGR00715 65 SIDILVDATHPFAAQITTNATAVCKELGIPY 95 (256)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcE
Confidence 899886444 44322 333445566664
No 261
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.28 E-value=69 Score=29.84 Aligned_cols=80 Identities=28% Similarity=0.266 Sum_probs=52.1
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcC-ch---------hhh
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK-GQ---------ETI 145 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~ 145 (396)
-||++. .+..|=.+.+-.||..|.++|+.|.+...+.. ......++..+-.+.|++++.-. +. -..
T Consensus 141 Vil~vG--VNG~GKTTTIaKLA~~l~~~g~~VllaA~DTF--RAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 141 VILFVG--VNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF--RAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred EEEEEe--cCCCchHhHHHHHHHHHHHCCCeEEEEecchH--HHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 466665 44456669999999999999999999986543 12233345556667788877632 11 012
Q ss_pred hhccCCcEEEEcCc
Q 016053 146 NTALKADLIVLNTA 159 (396)
Q Consensus 146 ~~~~~~DiV~~~~~ 159 (396)
.+..++|+|++.+.
T Consensus 217 Akar~~DvvliDTA 230 (340)
T COG0552 217 AKARGIDVVLIDTA 230 (340)
T ss_pred HHHcCCCEEEEeCc
Confidence 23477888877653
No 262
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=57.04 E-value=85 Score=25.89 Aligned_cols=67 Identities=4% Similarity=-0.080 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHHcCEE
Q 016053 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVL 360 (396)
Q Consensus 282 ~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~ 360 (396)
.=.+...++|+..+.+ +..+.-+++-|++ +...+.+.+++.| .+|.-+|.. .--.++.++||-|
T Consensus 88 ~~Dv~laIDame~~~~-------~~iD~~vLvSgD~------DF~~Lv~~lre~G--~~V~v~g~~~~ts~~L~~acd~F 152 (160)
T TIGR00288 88 DVDVRMAVEAMELIYN-------PNIDAVALVTRDA------DFLPVINKAKENG--KETIVIGAEPGFSTALQNSADIA 152 (160)
T ss_pred cccHHHHHHHHHHhcc-------CCCCEEEEEeccH------hHHHHHHHHHHCC--CEEEEEeCCCCChHHHHHhcCeE
Confidence 3457788888887632 1145555555655 5566666677777 468889943 4566899999988
Q ss_pred Eec
Q 016053 361 VQN 363 (396)
Q Consensus 361 v~p 363 (396)
+.-
T Consensus 153 I~L 155 (160)
T TIGR00288 153 IIL 155 (160)
T ss_pred EeC
Confidence 853
No 263
>PRK06756 flavodoxin; Provisional
Probab=56.51 E-value=26 Score=28.18 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=28.2
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|||+++... ..|..+.....+++.|.+.|++|.++.
T Consensus 2 mkv~IiY~S-~tGnTe~vA~~ia~~l~~~g~~v~~~~ 37 (148)
T PRK06756 2 SKLVMIFAS-MSGNTEEMADHIAGVIRETENEIEVID 37 (148)
T ss_pred ceEEEEEEC-CCchHHHHHHHHHHHHhhcCCeEEEee
Confidence 477777643 346667899999999999999998775
No 264
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=56.08 E-value=43 Score=33.03 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=29.6
Q ss_pred ccccEEEEEeccCCCCChH-HHHHHHHHHHHhCCCEEEEEeccC
Q 016053 72 MKSKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
.+.++|++... ||.. ....++++.|++.|++|.++....
T Consensus 68 l~~k~IllgVt----GsIAayka~~lvr~L~k~G~~V~VvmT~s 107 (475)
T PRK13982 68 LASKRVTLIIG----GGIAAYKALDLIRRLKERGAHVRCVLTKA 107 (475)
T ss_pred cCCCEEEEEEc----cHHHHHHHHHHHHHHHhCcCEEEEEECcC
Confidence 44567776653 4444 788999999999999999988543
No 265
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=55.88 E-value=24 Score=32.38 Aligned_cols=40 Identities=13% Similarity=-0.085 Sum_probs=30.6
Q ss_pred ccccEEEEEeccCCC--CChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 72 MKSKLVLLVSHELSL--SGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 72 m~~~kIl~v~~~~~~--gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|.++||+++....+. .-.-+....++++|.+.||+|..+.
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEc
Confidence 456799999865444 2223788899999999999998875
No 266
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=55.73 E-value=1.9e+02 Score=28.08 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCcc---chHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHH
Q 016053 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQ---TKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAA 356 (396)
Q Consensus 282 ~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~---~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~ 356 (396)
..|.+..++++.+....-++. +..+-.+-|+|.....+ ..+..+++++.++.|++.+..+.|.. +|+.. +..
T Consensus 137 ~~G~~~a~~al~~~~~~~~~~--~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~-~~~ 213 (426)
T cd01972 137 RSGFDAAFHGILRHLVPPQDP--TKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELER-ASE 213 (426)
T ss_pred hHHHHHHHHHHHHHhcCCCCC--CCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-ccc
Confidence 477888877776532110000 01223578888664311 24678899999999999777777632 44433 444
Q ss_pred cCEEEecCCCCCCCccHHHHHHH--hcCCCEEEcC
Q 016053 357 IDVLVQNSQAWGECFGRITIEAM--AFQLPVLVLS 389 (396)
Q Consensus 357 aDv~v~pS~~~~E~fg~~~lEAm--a~G~PVI~t~ 389 (396)
|.+-|..+. .+|..+.|.| -+|+|.+...
T Consensus 214 A~lniv~~~----~~g~~~a~~Lee~~GiP~~~~~ 244 (426)
T cd01972 214 AAANVTLCL----DLGYYLGAALEQRFGVPEIKAP 244 (426)
T ss_pred CCEEEEECh----hHHHHHHHHHHHHhCCCeEecC
Confidence 455444333 2567778887 4899999654
No 267
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.61 E-value=97 Score=30.58 Aligned_cols=88 Identities=19% Similarity=0.164 Sum_probs=47.9
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+.++|+++. +|. .-...++.|.++|++|+++-.... .......+.+...|+.++.-.... ....+|
T Consensus 15 ~~~~v~viG-----~G~--~G~~~A~~L~~~G~~V~~~d~~~~----~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D 80 (480)
T PRK01438 15 QGLRVVVAG-----LGV--SGFAAADALLELGARVTVVDDGDD----ERHRALAAILEALGATVRLGPGPT---LPEDTD 80 (480)
T ss_pred CCCEEEEEC-----CCH--HHHHHHHHHHHCCCEEEEEeCCch----hhhHHHHHHHHHcCCEEEECCCcc---ccCCCC
Confidence 445788775 232 333468999999999998753321 111123344556677775433222 235689
Q ss_pred EEEEcCc--hhhHHHHHHHhcCCC
Q 016053 153 LIVLNTA--VAGKWLDAVLKEDVP 174 (396)
Q Consensus 153 iV~~~~~--~~~~~~~~~~~~~~~ 174 (396)
+|+.... .....+..+...+++
T Consensus 81 ~Vv~s~Gi~~~~~~~~~a~~~gi~ 104 (480)
T PRK01438 81 LVVTSPGWRPDAPLLAAAADAGIP 104 (480)
T ss_pred EEEECCCcCCCCHHHHHHHHCCCe
Confidence 8877652 222333344444443
No 268
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=55.38 E-value=28 Score=32.20 Aligned_cols=37 Identities=5% Similarity=-0.079 Sum_probs=21.2
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHh-CCCEEEEEec
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITI 112 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~ 112 (396)
+||++=.-.... |-+..+.-..+++++ .+.++.++-+
T Consensus 2 ~~IAiDaMGGD~-~P~~vv~g~~~al~~~~~~~~iLvGd 39 (338)
T COG0416 2 IKIAIDAMGGDH-GPEVVVPGALQALEEHPDLEIILVGD 39 (338)
T ss_pred ceEEEeccCCCC-CcHHHHHHHHHHHHhCCCcEEEEECC
Confidence 456655532222 223566667778877 6677766653
No 269
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=55.33 E-value=1.3e+02 Score=27.00 Aligned_cols=110 Identities=12% Similarity=-0.025 Sum_probs=63.8
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHHHHhhccC---CCCEE-EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC-cC
Q 016053 274 AIINSVSRGKGQDLFLHSFYESLELIKEKKLE---VPSVH-AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-TL 348 (396)
Q Consensus 274 l~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~---~~~~~-l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-~~ 348 (396)
+++| ...-...+.+++.++++.+.-.+.... .|... .-.-|.| .+....+++..++.|++ +.-..+ .+
T Consensus 28 ~IAG-pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g----~~gl~~l~~~~~~~Gl~--~~t~~~d~~ 100 (260)
T TIGR01361 28 VIAG-PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLG----EEGLKLLRRAADEHGLP--VVTEVMDPR 100 (260)
T ss_pred EEEe-CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccH----HHHHHHHHHHHHHhCCC--EEEeeCChh
Confidence 3444 566667788888888776532221000 00000 0011212 23456788888899876 322222 35
Q ss_pred CHHHHHHHcCEEEecCCCCCCCccHHHHHH-HhcCCCEEEcCCCCC
Q 016053 349 TVAPYLAAIDVLVQNSQAWGECFGRITIEA-MAFQLPVLVLSELHP 393 (396)
Q Consensus 349 ~~~~~~~~aDv~v~pS~~~~E~fg~~~lEA-ma~G~PVI~t~~gG~ 393 (396)
++..+...+|++-.+|. +..-..++++ ...|+||+.++.-.+
T Consensus 101 ~~~~l~~~~d~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G~~~ 143 (260)
T TIGR01361 101 DVEIVAEYADILQIGAR---NMQNFELLKEVGKQGKPVLLKRGMGN 143 (260)
T ss_pred hHHHHHhhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCCCCC
Confidence 66666677899999997 4444455554 557999999887553
No 270
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=55.32 E-value=29 Score=30.28 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=29.1
Q ss_pred cEEEEEeccCCC-CChH-HHHHHHHHHHHhCCCEEEEEeccC
Q 016053 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 75 ~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
+||+++...... +|.+ .=+..-...|++.|++|+++++.+
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 578888764333 4655 555566788999999999999654
No 271
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=55.05 E-value=78 Score=27.57 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEE
Q 016053 283 KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVL 360 (396)
Q Consensus 283 Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~ 360 (396)
.+.+..++.|.+.. +++-.+-+=.. ....+..+++++.|...-+.+-+.. +.+..++...|++
T Consensus 71 ~~p~~~i~~fa~ag----------ad~It~H~E~~-----~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~V 135 (220)
T COG0036 71 ENPDRYIEAFAKAG----------ADIITFHAEAT-----EHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLV 135 (220)
T ss_pred CCHHHHHHHHHHhC----------CCEEEEEeccC-----cCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEE
Confidence 45688888888742 33322222222 2667888999999998888888764 7899999999999
Q ss_pred EecCCCCCCCccH
Q 016053 361 VQNSQAWGECFGR 373 (396)
Q Consensus 361 v~pS~~~~E~fg~ 373 (396)
++-|. ..|||.
T Consensus 136 llMsV--nPGfgG 146 (220)
T COG0036 136 LLMSV--NPGFGG 146 (220)
T ss_pred EEEeE--CCCCcc
Confidence 88888 888873
No 272
>PRK11914 diacylglycerol kinase; Reviewed
Probab=54.94 E-value=36 Score=31.35 Aligned_cols=45 Identities=18% Similarity=0.025 Sum_probs=32.7
Q ss_pred ccccccEEEEEeccCCC-CChHHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 70 SFMKSKLVLLVSHELSL-SGGPLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 70 ~~m~~~kIl~v~~~~~~-gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
+.|.++|+++|.+..+. |.+.+...++.+.|.+.|+++.++....
T Consensus 4 ~~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 4 RRHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 34556788888766554 3345778889999999999998776443
No 273
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=54.80 E-value=53 Score=32.43 Aligned_cols=36 Identities=19% Similarity=0.080 Sum_probs=28.9
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.+|++..+ ..|.-..+.++++.|.++||+|++++..
T Consensus 7 ~~il~~~p---~~sH~~~~~~la~~L~~~gh~vt~~~~~ 42 (496)
T KOG1192|consen 7 HNILVPFP---GQSHLNPMLQLAKRLAERGHNVTVVTPS 42 (496)
T ss_pred eeEEEECC---cccHHHHHHHHHHHHHHcCCceEEEEee
Confidence 35666665 4455699999999999999999999843
No 274
>PLN03015 UDP-glucosyl transferase
Probab=54.60 E-value=97 Score=30.63 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=29.7
Q ss_pred EEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 341 VHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 341 V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
+.+.++..+ .++++...+-.+-+. +--++++||+.+|+|+|+-..-
T Consensus 337 l~v~~W~PQ-~~vL~h~~vg~fvtH----~GwnS~~Eai~~GvP~v~~P~~ 382 (470)
T PLN03015 337 LVVTQWAPQ-VEILSHRSIGGFLSH----CGWSSVLESLTKGVPIVAWPLY 382 (470)
T ss_pred eEEEecCCH-HHHhccCccCeEEec----CCchhHHHHHHcCCCEEecccc
Confidence 445566543 356777666333232 3336889999999999987653
No 275
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=54.13 E-value=1.3e+02 Score=25.62 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=49.7
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchh--------hhh-
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--------TIN- 146 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~- 146 (396)
.|+++.+ ...|=.+.+..||..+..+|..|.+++.+... .....++.......+++++...... .+.
T Consensus 3 vi~lvGp--tGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R--~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 3 VIALVGP--TGVGKTTTIAKLAARLKLKGKKVALISADTYR--IGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEESTSS--THHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEECC--CCCchHhHHHHHHHHHhhccccceeecCCCCC--ccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4666663 33455689999999999999999999965332 2333345556666788887665221 111
Q ss_pred -hccCCcEEEEcCc
Q 016053 147 -TALKADLIVLNTA 159 (396)
Q Consensus 147 -~~~~~DiV~~~~~ 159 (396)
...++|+|++.++
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 2356889988764
No 276
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=54.00 E-value=46 Score=26.90 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=32.4
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCC---EEEEEeccC
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGT---KVNWITIQK 114 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~---~V~vi~~~~ 114 (396)
|+..||+++.+.++..=.+..+..-.+.|.+.|. ++.++.-.+
T Consensus 1 ~~~~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPG 46 (144)
T PF00885_consen 1 MSGLRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPG 46 (144)
T ss_dssp -TTEEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESS
T ss_pred CCCCEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCC
Confidence 6678999999887765445777778888999987 778777443
No 277
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=53.83 E-value=57 Score=31.93 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=26.0
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
+||||++. +| .....+++++++.|++|.+++..
T Consensus 2 ~k~iLi~g-----~g--~~a~~i~~aa~~~G~~vv~~~~~ 34 (451)
T PRK08591 2 FDKILIAN-----RG--EIALRIIRACKELGIKTVAVHST 34 (451)
T ss_pred cceEEEEC-----CC--HHHHHHHHHHHHcCCeEEEEcCh
Confidence 46899886 33 45788889999999999998743
No 278
>PRK00170 azoreductase; Reviewed
Probab=53.75 E-value=30 Score=29.47 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=27.5
Q ss_pred cEEEEEeccCCCC-ChH-HHHHHHHHHHHhC--CCEEEEEe
Q 016053 75 KLVLLVSHELSLS-GGP-LLLMELAFLLRGV--GTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~g-G~~-~~~~~l~~~L~~~--G~~V~vi~ 111 (396)
|||++|....... |.. ..+..+.+.+.+. |++|.++-
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~d 42 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRD 42 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5888887655444 544 5666778888888 99999886
No 279
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=53.52 E-value=34 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=33.6
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCC
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (396)
...-.+++|+...-..+..+++.+.+++..++ -|.|.|..+. +-..+|.+++||.
T Consensus 26 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~~~~---i~~~aDa~l~~sv 80 (223)
T TIGR01768 26 SGTDAILIGGSQGVTYEKTDTLIEALRRYGLP-IILFPSNPTN---VSRDADALFFPSV 80 (223)
T ss_pred cCCCEEEEcCCCcccHHHHHHHHHHHhccCCC-EEEeCCCccc---cCcCCCEEEEEEe
Confidence 35667788864422223445556667777765 4556665543 3456999998885
No 280
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=52.98 E-value=42 Score=29.69 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcC
Q 016053 289 LHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAID 358 (396)
Q Consensus 289 i~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aD 358 (396)
...|+.+.+++.+ |+..++++|+|. ++ ++.++.++.+ +.-+....++..++.+-+
T Consensus 216 ~~cFe~I~~Rfg~-----p~~~f~~IGDG~-----eE---e~aAk~l~wP--Fw~I~~h~Dl~~l~~aL~ 270 (274)
T TIGR01658 216 LQCFKWIKERFGH-----PKVRFCAIGDGW-----EE---CTAAQAMNWP--FVKIDLHPDSSHRFPGLT 270 (274)
T ss_pred HHHHHHHHHHhCC-----CCceEEEeCCCh-----hH---HHHHHhcCCC--eEEeecCCCHHHhCccCC
Confidence 4677777777644 899999999995 22 2455556654 444444456666555433
No 281
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=52.94 E-value=60 Score=28.40 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.2
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
+|..+++.-..-|-.+...++..+|++.|.+|.++-.+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 67778754433344488899999999999999999743
No 282
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=52.62 E-value=83 Score=33.55 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=48.0
Q ss_pred cccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccC
Q 016053 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (396)
Q Consensus 71 ~m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (396)
||++++|+++.- || .=+.-|++.|.++|++|++.- ..... ....+...|+.++.-.... ....
T Consensus 1 ~~~~~~i~viG~----G~--sG~salA~~L~~~G~~V~~sD-~~~~~-------~~~~L~~~gi~~~~g~~~~---~~~~ 63 (809)
T PRK14573 1 MMKSLFYHFIGI----GG--IGMSALAHILLDRGYSVSGSD-LSEGK-------TVEKLKAKGARFFLGHQEE---HVPE 63 (809)
T ss_pred CCCcceEEEEEe----cH--HhHHHHHHHHHHCCCeEEEEC-CCCCh-------HHHHHHHCCCEEeCCCCHH---HcCC
Confidence 455667877762 33 224445788999999998743 22211 1123445577765333221 1236
Q ss_pred CcEEEEcCc--hhhHHHHHHHhcCCCc
Q 016053 151 ADLIVLNTA--VAGKWLDAVLKEDVPR 175 (396)
Q Consensus 151 ~DiV~~~~~--~~~~~~~~~~~~~~~~ 175 (396)
+|+|+.... .....+..+...++|.
T Consensus 64 ~d~vV~SpgI~~~~p~~~~a~~~gi~v 90 (809)
T PRK14573 64 DAVVVYSSSISKDNVEYLSAKSRGNRL 90 (809)
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCCcE
Confidence 898887663 2334455555555553
No 283
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=52.62 E-value=59 Score=30.15 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=44.7
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc--CCCC--chhhhhhhhhhhhhcceEEEEcCchh-----hh
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ--KPSE--EDEVIYSLEHKMWDRGVQVISAKGQE-----TI 145 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 145 (396)
|||+|+.+ ..+.....++|.+.||++..+... .+.. ......++.+.....+++++...... ..
T Consensus 1 mkIvf~Gs-------~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~ 73 (313)
T TIGR00460 1 LRIVFFGT-------PTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPL 73 (313)
T ss_pred CEEEEECC-------CHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHH
Confidence 47777752 245566677778888998754422 2111 11122335556667788887654432 22
Q ss_pred hhccCCcEEEEcC
Q 016053 146 NTALKADLIVLNT 158 (396)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (396)
....++|++++..
T Consensus 74 l~~~~~Dliv~~~ 86 (313)
T TIGR00460 74 VRELKPDVIVVVS 86 (313)
T ss_pred HHhhCCCEEEEcc
Confidence 3457999998765
No 284
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=52.36 E-value=33 Score=28.94 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=25.5
Q ss_pred cEEEEEeccCCCCCh-HHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|||++... |+. .....++++.|++.|++|.++...
T Consensus 2 k~Ill~vt----Gsiaa~~~~~li~~L~~~g~~V~vv~T~ 37 (182)
T PRK07313 2 KNILLAVS----GSIAAYKAADLTSQLTKRGYQVTVLMTK 37 (182)
T ss_pred CEEEEEEe----ChHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 45655542 332 366889999999999999998854
No 285
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=52.19 E-value=1e+02 Score=29.09 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=54.7
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCC-------CchhhhhhhhhhhhhcceEEEEcCchhh
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPS-------EEDEVIYSLEHKMWDRGVQVISAKGQET 144 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (396)
|++|||+...+ ||....+. |..|+++||+|.-++-.... ...+............|++.+.......
T Consensus 1 ~~~~kV~v~mS----GGVDSSVa--A~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~ 74 (356)
T COG0482 1 MKKKKVLVGMS----GGVDSSVA--AYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKE 74 (356)
T ss_pred CCCcEEEEEcc----CCHHHHHH--HHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHH
Confidence 35567776553 67653333 45577899999988722111 1111112233344556888876665544
Q ss_pred hhh--------------ccCCcEEEEcCchhhHHHHHHHhcCCC
Q 016053 145 INT--------------ALKADLIVLNTAVAGKWLDAVLKEDVP 174 (396)
Q Consensus 145 ~~~--------------~~~~DiV~~~~~~~~~~~~~~~~~~~~ 174 (396)
+.. .-+||+.-.+.......+..+...+.-
T Consensus 75 y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad 118 (356)
T COG0482 75 FWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGAD 118 (356)
T ss_pred HHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCC
Confidence 432 267887655656666666666665533
No 286
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=51.96 E-value=49 Score=32.30 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=22.8
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|+||||++. +| .+-..++..|++.|++|.++.
T Consensus 1 ~~~kVLvlG-----~G--~re~al~~~l~~~g~~v~~~~ 32 (435)
T PRK06395 1 MTMKVMLVG-----SG--GREDAIARAIKRSGAILFSVI 32 (435)
T ss_pred CceEEEEEC-----Cc--HHHHHHHHHHHhCCCeEEEEE
Confidence 357999976 33 356667777888898777774
No 287
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=51.74 E-value=1.6e+02 Score=26.58 Aligned_cols=81 Identities=26% Similarity=0.237 Sum_probs=45.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch----h----hh--
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ----E----TI-- 145 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~-- 145 (396)
++..+.. ....|=.+...+|+..+++.|+.|.++..+... ......+..+....++.++..... . .+
T Consensus 73 ~vi~l~G-~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r--~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 73 NVILFVG-VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR--AAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred eEEEEEC-CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC--HHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 4444442 333444588999999999999999999855321 111222344445556666543211 1 11
Q ss_pred hhccCCcEEEEcCc
Q 016053 146 NTALKADLIVLNTA 159 (396)
Q Consensus 146 ~~~~~~DiV~~~~~ 159 (396)
....++|+|++.++
T Consensus 150 ~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 150 AKARNIDVVLIDTA 163 (272)
T ss_pred HHHCCCCEEEEeCC
Confidence 12356788877765
No 288
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=51.67 E-value=50 Score=25.51 Aligned_cols=42 Identities=17% Similarity=-0.126 Sum_probs=29.3
Q ss_pred cEEEEEeccCCC-CChH-HHHHHHHHHHHhCCCEEEEEeccCCC
Q 016053 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQKPS 116 (396)
Q Consensus 75 ~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~vi~~~~~~ 116 (396)
|||.++....+. --.. ....+++++|.+.+|+|..+.-.+..
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g 44 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVIPIYIDKDG 44 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEEEEEETTTS
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEEEEeecCCC
Confidence 588888854433 1112 67788899999999999988844333
No 289
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=51.04 E-value=82 Score=29.50 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=45.1
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+.++|+++... ..+....++..+...|.+|.++++..-...........+.....|..+........ ...+.|
T Consensus 154 ~g~kia~vGD~-----~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e--a~~~aD 226 (332)
T PRK04284 154 KDIKFTYVGDG-----RNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDE--GVKGSD 226 (332)
T ss_pred CCcEEEEecCC-----CcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHH--HhCCCC
Confidence 34689988642 12578888888999999999999764432222211111222234544432222222 225788
Q ss_pred EEEEcC
Q 016053 153 LIVLNT 158 (396)
Q Consensus 153 iV~~~~ 158 (396)
+|++..
T Consensus 227 vvy~~~ 232 (332)
T PRK04284 227 VIYTDV 232 (332)
T ss_pred EEEECC
Confidence 888854
No 290
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=50.94 E-value=1.3e+02 Score=24.17 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=45.3
Q ss_pred CCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCC
Q 016053 305 EVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (396)
Q Consensus 305 ~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~ 383 (396)
+...-+.+|+|.+. .-.+-+..+..+.+ -.|...... .++.++.+.||+++...- .. ++.--|-+.-|.
T Consensus 25 ~~~gk~v~VvGrs~----~vG~pla~lL~~~g--atV~~~~~~t~~l~~~v~~ADIVvsAtg--~~--~~i~~~~ikpGa 94 (140)
T cd05212 25 RLDGKKVLVVGRSG----IVGAPLQCLLQRDG--ATVYSCDWKTIQLQSKVHDADVVVVGSP--KP--EKVPTEWIKPGA 94 (140)
T ss_pred CCCCCEEEEECCCc----hHHHHHHHHHHHCC--CEEEEeCCCCcCHHHHHhhCCEEEEecC--CC--CccCHHHcCCCC
Confidence 44677899999875 23444555555544 346666643 589999999999987654 22 333345555554
Q ss_pred CEE
Q 016053 384 PVL 386 (396)
Q Consensus 384 PVI 386 (396)
-|+
T Consensus 95 ~Vi 97 (140)
T cd05212 95 TVI 97 (140)
T ss_pred EEE
Confidence 444
No 291
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=50.74 E-value=21 Score=26.40 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=36.6
Q ss_pred EEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCC
Q 016053 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (396)
-|+++|.|...+.-....+++..++.|++-+|.- ....++..+...+|+++.+..
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~-~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ-CRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEE-ecHHHHhhhcCCCCEEEECCc
Confidence 4678888864443336778888888888633333 133456666678899988765
No 292
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=50.47 E-value=2.8e+02 Score=27.87 Aligned_cols=76 Identities=17% Similarity=0.098 Sum_probs=51.6
Q ss_pred CEEEEEEecCC--CccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHh--c
Q 016053 308 SVHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--F 381 (396)
Q Consensus 308 ~~~l~ivG~g~--~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma--~ 381 (396)
+-.+.|+|... ...+.+..+++++.+++|++.++.+.+.. +|+.. +..|++-|..+. | +|..+.|.|. +
T Consensus 158 ~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~-l~~A~~nivl~~---~-~g~~~A~~Lee~f 232 (519)
T PRK02910 158 RPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKR-LPAAWFNVVLYR---E-IGESAARYLEREF 232 (519)
T ss_pred CCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCcEEEEeCH---H-HHHHHHHHHHHHh
Confidence 34688888743 22345778899999999999888776532 55533 456666655443 2 5677777755 7
Q ss_pred CCCEEEc
Q 016053 382 QLPVLVL 388 (396)
Q Consensus 382 G~PVI~t 388 (396)
|+|.+.+
T Consensus 233 GiP~i~~ 239 (519)
T PRK02910 233 GQPYVKT 239 (519)
T ss_pred CCccccc
Confidence 8998864
No 293
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=50.43 E-value=2e+02 Score=27.81 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=47.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe-ccCCCCchhhhhhhhhhhhhcceEE-EEcCchhhhhhccCCc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQV-ISAKGQETINTALKAD 152 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D 152 (396)
||||+|.+ || +=..|+..|.+.+.--.+++ +.++.... ...+. ++.+ -.......+.+..++|
T Consensus 1 mkVLviGs----Gg---REHAiA~~la~s~~v~~~~~apgN~G~a~------~~~~~--~~~~~~~~~~lv~fA~~~~id 65 (428)
T COG0151 1 MKVLVIGS----GG---REHALAWKLAQSPLVLYVYVAPGNPGTAL------EAYLV--NIEIDTDHEALVAFAKEKNVD 65 (428)
T ss_pred CeEEEEcC----Cc---hHHHHHHHHhcCCceeEEEEeCCCCccch------hhhhc--cCccccCHHHHHHHHHHcCCC
Confidence 58998874 44 44566777777664445554 44443111 11111 1112 1223344566778999
Q ss_pred EEEEcC--chhhHHHHHHHhcCCCc
Q 016053 153 LIVLNT--AVAGKWLDAVLKEDVPR 175 (396)
Q Consensus 153 iV~~~~--~~~~~~~~~~~~~~~~~ 175 (396)
++++-- |+.......+...+++.
T Consensus 66 l~vVGPE~pL~~GvvD~l~~~Gi~v 90 (428)
T COG0151 66 LVVVGPEAPLVAGVVDALRAAGIPV 90 (428)
T ss_pred EEEECCcHHHhhhhHHHHHHCCCce
Confidence 998865 44455556677777663
No 294
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.35 E-value=1e+02 Score=29.92 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=53.1
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch---h-------hh
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ---E-------TI 145 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~ 145 (396)
.|+++. +..+|=.+.+-.||.+|+++|+.|-+++.+...+ ....++.......+++++..... - ..
T Consensus 102 vImmvG--LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp--AA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 102 VILMVG--LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP--AAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred EEEEEe--ccCCChHhHHHHHHHHHHHcCCceEEEecccCCh--HHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 577766 4446666999999999999999999999553321 22233555555667888776311 1 11
Q ss_pred hhccCCcEEEEcCc
Q 016053 146 NTALKADLIVLNTA 159 (396)
Q Consensus 146 ~~~~~~DiV~~~~~ 159 (396)
.+...+|+|++.+.
T Consensus 178 ak~~~~DvvIvDTA 191 (451)
T COG0541 178 AKEEGYDVVIVDTA 191 (451)
T ss_pred HHHcCCCEEEEeCC
Confidence 23467899998873
No 295
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=50.12 E-value=77 Score=29.76 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.2
Q ss_pred EEEEeccCCCCChH--HHHHHHHHHHHhCCCEEEEEecc
Q 016053 77 VLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 77 Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|..|. +...||.. -.+..|++.|+++|++|.|++..
T Consensus 58 VIsVG-NitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 95 (338)
T PRK01906 58 VVVVG-NVTVGGTGKTPTVIALVDALRAAGFTPGVVSRG 95 (338)
T ss_pred EEEEC-CccCCCCChHHHHHHHHHHHHHcCCceEEEecC
Confidence 44343 35556655 78999999999999999999943
No 296
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=50.12 E-value=30 Score=28.36 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=27.0
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
||+|++... .-|-.......++..|++.|++|++.-
T Consensus 1 Mk~LIlYst-r~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 1 MKTLILYST-RDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred CceEEEEec-CCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 467766531 224445899999999999999999985
No 297
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=50.00 E-value=1.2e+02 Score=27.80 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=52.0
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+.+|++++.. | ..+...|+.+-...|.+|++.++.+-.+.........+.....|..+...... ...-.+.|
T Consensus 152 ~g~k~a~vGD-----g-NNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~--~eAv~gAD 223 (310)
T COG0078 152 KGLKLAYVGD-----G-NNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDP--EEAVKGAD 223 (310)
T ss_pred cCcEEEEEcC-----c-chHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCH--HHHhCCCC
Confidence 4468888763 3 68888899999999999999998876655544433333334445344322221 12236789
Q ss_pred EEEEcCchh
Q 016053 153 LIVLNTAVA 161 (396)
Q Consensus 153 iV~~~~~~~ 161 (396)
+|+...+.+
T Consensus 224 vvyTDvWvS 232 (310)
T COG0078 224 VVYTDVWVS 232 (310)
T ss_pred EEEecCccc
Confidence 999887544
No 298
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=49.87 E-value=34 Score=32.93 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=29.4
Q ss_pred cccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 71 ~m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
+++++||++.... +.+.....++++.|.+.|++|.++....
T Consensus 3 ~l~~k~IllgvTG---siaa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 3 MLAGKRIVLGVSG---GIAAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCCCCeEEEEEeC---HHHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 4556777766531 2223678899999999999999988543
No 299
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=49.52 E-value=71 Score=31.55 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=26.2
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.+|||+++ +| .....+++++++.|+++.+++..
T Consensus 2 ~~kvLi~~-----~g--eia~~ii~a~~~~Gi~~v~v~~~ 34 (472)
T PRK07178 2 IKKILIAN-----RG--EIAVRIVRACAEMGIRSVAIYSE 34 (472)
T ss_pred CcEEEEEC-----Cc--HHHHHHHHHHHHcCCeEEEEeCC
Confidence 36888886 33 56778999999999999998854
No 300
>PRK09271 flavodoxin; Provisional
Probab=49.49 E-value=39 Score=27.70 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=27.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|||+++... ..|-.+.....+++.|...|++|.+.-
T Consensus 1 mkv~IvY~S-~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYAS-LSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEc-CCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 467777643 346677999999999999999988664
No 301
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=49.20 E-value=2.6e+02 Score=27.18 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHH-HHHHHHhhccCCCCEEEEEEecCCCcc---chHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHH
Q 016053 281 RGKGQDLFLHSFYE-SLELIKEKKLEVPSVHAVIIGSDMNAQ---TKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYL 354 (396)
Q Consensus 281 ~~Kg~~~li~a~~~-l~~~~~~~~~~~~~~~l~ivG~g~~~~---~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~ 354 (396)
...|.+..++++-+ +...-.+ ..+-.+-|+|.-+..+ +.+.++++++.++.|++.++.|.+.. +|+.. +
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~----~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~-~ 205 (427)
T cd01971 131 NYAGHEIVLKAIIDQYVGQSEE----KEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRS-I 205 (427)
T ss_pred cccHHHHHHHHHHHHhccCCCC----CCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-c
Confidence 35788877777754 2210000 1334677888632111 23678899999999999777776532 44433 3
Q ss_pred HHcCEEEecCCCCCCCccHHHHHHH--hcCCCEEEcC
Q 016053 355 AAIDVLVQNSQAWGECFGRITIEAM--AFQLPVLVLS 389 (396)
Q Consensus 355 ~~aDv~v~pS~~~~E~fg~~~lEAm--a~G~PVI~t~ 389 (396)
..|.+-+..+. . .|..+.+.| .+|+|.+..+
T Consensus 206 ~~A~~niv~~~--~--~g~~~a~~L~~~~giP~i~~~ 238 (427)
T cd01971 206 PKAQFNLVLSP--W--VGLEFAQHLEEKYGQPYIHSP 238 (427)
T ss_pred ccCcEEEEEcH--h--hHHHHHHHHHHHhCCceEecC
Confidence 45555444443 2 356666666 5799998865
No 302
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=48.96 E-value=96 Score=22.25 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHH
Q 016053 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPY 353 (396)
Q Consensus 284 g~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~ 353 (396)
|.+..+++++. ...+++|+..+.+. .....+..++++.+++ +.+.+..+|+-..
T Consensus 15 G~~~v~kai~~------------gkaklViiA~D~~~--~~~~~i~~~c~~~~Vp--~~~~~s~~eLG~a 68 (82)
T PRK13602 15 GTKQTVKALKR------------GSVKEVVVAEDADP--RLTEKVEALANEKGVP--VSKVDSMKKLGKA 68 (82)
T ss_pred cHHHHHHHHHc------------CCeeEEEEECCCCH--HHHHHHHHHHHHcCCC--EEEECCHHHHHHH
Confidence 56777777764 57888888876533 3677888889988876 6666644555443
No 303
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=48.75 E-value=60 Score=33.64 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=43.5
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEE-EEe-ccCCCCchhhhhhhhhhhhhcceEEEEcCchh-----hhhh
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN-WIT-IQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE-----TINT 147 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~-vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 147 (396)
|||.|+. ...+.....+.|.+.||+|. |+| ++.+.. .....++.......|++++...... ...+
T Consensus 1 mkivf~g-------~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~-~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~ 72 (660)
T PRK08125 1 MKAVVFA-------YHDIGCVGIEALLAAGYEIAAVFTHTDNPGE-NHFFGSVARLAAELGIPVYAPEDVNHPLWVERIR 72 (660)
T ss_pred CeEEEEC-------CCHHHHHHHHHHHHCCCcEEEEEeCCCCCcC-CCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHH
Confidence 3677664 22444555577777899998 565 333321 1122235566677788887544321 2234
Q ss_pred ccCCcEEEEcC
Q 016053 148 ALKADLIVLNT 158 (396)
Q Consensus 148 ~~~~DiV~~~~ 158 (396)
..+||++++-.
T Consensus 73 ~~~~D~iv~~~ 83 (660)
T PRK08125 73 ELAPDVIFSFY 83 (660)
T ss_pred hcCCCEEEEcc
Confidence 56889887643
No 304
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=48.70 E-value=89 Score=28.84 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=45.3
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+..||+++.. ..+....++..+...|.+|+++++..............+.....|..+....... .-.+.|
T Consensus 146 ~g~kva~vGD------~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~---a~~~aD 216 (302)
T PRK14805 146 SKVKLAYVGD------GNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDIE---AIEGHD 216 (302)
T ss_pred CCcEEEEEcC------CCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCHH---HHCCCC
Confidence 3468998864 1357788899999999999999976543222221111122233455443222222 236788
Q ss_pred EEEEcC
Q 016053 153 LIVLNT 158 (396)
Q Consensus 153 iV~~~~ 158 (396)
+|+...
T Consensus 217 vvy~~~ 222 (302)
T PRK14805 217 AIYTDT 222 (302)
T ss_pred EEEeec
Confidence 888754
No 305
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=48.65 E-value=1.5e+02 Score=28.38 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=57.6
Q ss_pred CCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc
Q 016053 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (396)
Q Consensus 268 ~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (396)
++.+.+..+. ..++++.+.+..+++ +.+.+.+++.. ...++++.... ..+.+....
T Consensus 25 p~~f~VvaLa---a~~n~~~l~~q~~~f------------~p~~v~i~~~~-----~~~~l~~~l~~----~~~~v~~G~ 80 (385)
T PRK05447 25 PDRFRVVALS---AGKNVELLAEQAREF------------RPKYVVVADEE-----AAKELKEALAA----AGIEVLAGE 80 (385)
T ss_pred ccccEEEEEE---cCCCHHHHHHHHHHh------------CCCEEEEcCHH-----HHHHHHHhhcc----CCceEEECh
Confidence 4455555443 367888887777654 33666666532 34445443321 123333334
Q ss_pred CCHHHHHHH--cCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 348 LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 348 ~~~~~~~~~--aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
+.+.++.+. +|++|.... +..--..+++|+..|++|...|
T Consensus 81 ~~~~~l~~~~~vD~Vv~Ai~--G~aGl~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 81 EGLCELAALPEADVVVAAIV--GAAGLLPTLAAIRAGKRIALAN 122 (385)
T ss_pred hHHHHHhcCCCCCEEEEeCc--CcccHHHHHHHHHCCCcEEEeC
Confidence 566777775 488887776 4433356899999999998754
No 306
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.63 E-value=1.6e+02 Score=26.85 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCCCCEEEEEEecccCCC-CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhc
Q 016053 257 REHVRESLGVRNEDLLFAIINSVSRGK-GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (396)
Q Consensus 257 ~~~~r~~~g~~~~~~~il~vG~l~~~K-g~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (396)
.+.+++++|+++.--.+ ++-+...+ .++..|+-.++.. ..+.|++.+.- ...+.++..
T Consensus 164 ~~~l~~rlgv~ek~~~~--~slFaY~npa~~s~ieq~r~a~----------~p~llL~~e~~---------~~~~~~~~~ 222 (370)
T COG4394 164 AEYLLERLGVNEKYDLI--ASLFAYENPALPSWIEQLRKAD----------KPILLLIPEGK---------TQANFAKYF 222 (370)
T ss_pred HHHHHHHcCCchhhchh--hhhhccCCcchHHHHHHHHhcC----------CCEEEEcccch---------HHHHHHHHc
Confidence 46789999996432222 44445555 7788887777643 35666666542 222333332
Q ss_pred CCC------------CcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEE
Q 016053 336 KIQ------------DRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (396)
Q Consensus 336 ~l~------------~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI 386 (396)
+.+ -+|.-++++ ++..+++-.||+-+.-.- =+..-|.-+|+|.+
T Consensus 223 ~~~~~a~Gdv~~~~~lrvvklPFvpqddyd~LL~lcD~n~VRGE-------DSFVRAq~agkPfl 280 (370)
T COG4394 223 DNNNNADGDVFQTAKLRVVKLPFVPQDDYDELLWLCDFNLVRGE-------DSFVRAQLAGKPFL 280 (370)
T ss_pred CCCcccccchhcccceEEEEecCCcHhHHHHHHHhcccceeecc-------hHHHHHHHcCCCcE
Confidence 222 134445554 789999999999776332 23466777888765
No 307
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=48.50 E-value=93 Score=30.47 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=25.5
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
++|||++. +| .....+++++++.|++|.++..
T Consensus 2 ~kkili~g-----~g--~~~~~~~~aa~~lG~~vv~~~~ 33 (449)
T TIGR00514 2 LDKILIAN-----RG--EIALRILRACKELGIKTVAVHS 33 (449)
T ss_pred cceEEEeC-----CC--HHHHHHHHHHHHcCCeEEEEEC
Confidence 46888875 33 4578889999999999999874
No 308
>PRK05568 flavodoxin; Provisional
Probab=48.43 E-value=45 Score=26.48 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=27.9
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
++++++... ..|..++....+++.+.+.|++|.++..
T Consensus 2 ~~~~IvY~S-~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 2 KKINIIYWS-GTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred CeEEEEEEC-CCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 356666532 4466679999999999999999998863
No 309
>PRK00211 sulfur relay protein TusC; Validated
Probab=48.24 E-value=45 Score=25.95 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=29.3
Q ss_pred ccEEEEEeccCCCCChH-HHHHHHHHHHHhCCCEEEEEecc
Q 016053 74 SKLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
||||+|+....+.|... +-..+++-++...+.+|.++.-.
T Consensus 1 M~ki~~i~~~~Pyg~~~~~eaLd~ala~~a~~~~v~vff~~ 41 (119)
T PRK00211 1 MKRIAFVFRQAPHGTASGREGLDALLATSAFTEDIGVFFID 41 (119)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcccCCeeEEEEh
Confidence 35799999877775532 66666688888888899888743
No 310
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=48.12 E-value=1.5e+02 Score=27.38 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHc--CEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 324 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 324 ~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~a--Dv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
..+..++.+++.+.+ -..+++.++++.- |+++..+. ...-.-.+..|+..|++|++=.
T Consensus 39 ~~~~a~~~a~~~~~~------~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 39 DPERAEAFAEEFGIA------KAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred CHHHHHHHHHHcCCC------cccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEEEcC
Confidence 456688888888865 1136788888874 78877766 4443444599999999999743
No 311
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=48.05 E-value=39 Score=30.05 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=26.5
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
++|++++ .-...|..+...+|+.+|++.|.+|.++=.
T Consensus 2 ~~iai~s-~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 2 KVIAIVS-PKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred cEEEEec-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3455444 232344458999999999999999999863
No 312
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=47.85 E-value=77 Score=29.30 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=43.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCC----chhhhhhhhhhhhhcceEEEEcCch-----hhh
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSE----EDEVIYSLEHKMWDRGVQVISAKGQ-----ETI 145 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 145 (396)
|||+|+.. ..+.....+.|.+.|+++..+....+.. ......++.+.....+++++..... ...
T Consensus 1 mkIvf~G~-------~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~ 73 (309)
T PRK00005 1 MRIVFMGT-------PEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAE 73 (309)
T ss_pred CEEEEECC-------CHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHH
Confidence 47887752 2455666777777788887544222111 0111223555666778888654332 123
Q ss_pred hhccCCcEEEEcC
Q 016053 146 NTALKADLIVLNT 158 (396)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (396)
....+||++++-.
T Consensus 74 l~~~~~Dliv~~~ 86 (309)
T PRK00005 74 LAALNADVIVVVA 86 (309)
T ss_pred HHhcCcCEEEEeh
Confidence 3457999998754
No 313
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=47.85 E-value=1.3e+02 Score=28.24 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=54.4
Q ss_pred CEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCC-CEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcC
Q 016053 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVP-SVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTL 348 (396)
Q Consensus 270 ~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~-~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~ 348 (396)
++.++.+|. .- | ...++++.++ + +++++-+-+- ..+..++.++++|++ ...
T Consensus 3 ~~rVgViG~-~~--G-~~h~~al~~~-----------~~~~eLvaV~d~------~~erA~~~A~~~gi~-------~y~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RF--G-QFYLAAFAAA-----------PERFELAGILAQ------GSERSRALAHRLGVP-------LYC 54 (343)
T ss_pred CcEEEEEeH-HH--H-HHHHHHHHhC-----------CCCcEEEEEEcC------CHHHHHHHHHHhCCC-------ccC
Confidence 456778886 22 3 3455666543 4 6777666653 356677888888754 135
Q ss_pred CHHHHHHHcCEE--EecCCC-CCCCccHHHHHHHhcCCCEEE
Q 016053 349 TVAPYLAAIDVL--VQNSQA-WGECFGRITIEAMAFQLPVLV 387 (396)
Q Consensus 349 ~~~~~~~~aDv~--v~pS~~-~~E~fg~~~lEAma~G~PVI~ 387 (396)
++.+++...|+. ..|+.. -..++ -.+.+|+..|+.|++
T Consensus 55 ~~eell~d~Di~~V~ipt~~P~~~H~-e~a~~aL~aGkHVL~ 95 (343)
T TIGR01761 55 EVEELPDDIDIACVVVRSAIVGGQGS-ALARALLARGIHVLQ 95 (343)
T ss_pred CHHHHhcCCCEEEEEeCCCCCCccHH-HHHHHHHhCCCeEEE
Confidence 777788766654 344320 01222 345789999999987
No 314
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=47.75 E-value=1.9e+02 Score=26.38 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=30.1
Q ss_pred CCHHHHHH--HcCEEEecCCCCCCCccHHHHHHHh--cCCCEEE
Q 016053 348 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPVLV 387 (396)
Q Consensus 348 ~~~~~~~~--~aDv~v~pS~~~~E~fg~~~lEAma--~G~PVI~ 387 (396)
.++.+.+. .+|+++=.|.. .-.|.--+++.|+ +..|+|-
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~-~g~ft~evv~~Ma~~~~~PIIF 137 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGV-GGAFTEEVVRAMAKSNERPIIF 137 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCC-CCCCCHHHHHHHHhcCCCCEEE
Confidence 46888888 77999988841 4568888999998 5778774
No 315
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=47.58 E-value=94 Score=26.42 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=42.7
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCC--EEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcC--c---------
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGT--KVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAK--G--------- 141 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~--~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------- 141 (396)
|||+++. +|....+..+++++.+.+. +|.++....+. ....+.....|++++... .
T Consensus 1 ~riail~-----sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~------~~~~~~A~~~gip~~~~~~~~~~~~~~~~~ 69 (190)
T TIGR00639 1 KRIVVLI-----SGNGSNLQAIIDACKEGKIPASVVLVISNKPD------AYGLERAAQAGIPTFVLSLKDFPSREAFDQ 69 (190)
T ss_pred CeEEEEE-----cCCChhHHHHHHHHHcCCCCceEEEEEECCcc------chHHHHHHHcCCCEEEECccccCchhhhhH
Confidence 4677777 3445778888888888665 56554433321 012344556677765422 1
Q ss_pred -hhhhhhccCCcEEEEcC
Q 016053 142 -QETINTALKADLIVLNT 158 (396)
Q Consensus 142 -~~~~~~~~~~DiV~~~~ 158 (396)
.....+..++|++++-.
T Consensus 70 ~~~~~l~~~~~D~iv~~~ 87 (190)
T TIGR00639 70 AIIEELRAHEVDLVVLAG 87 (190)
T ss_pred HHHHHHHhcCCCEEEEeC
Confidence 11223457899998765
No 316
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=47.40 E-value=31 Score=27.28 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=32.3
Q ss_pred CEEEEEEecCCCccchHHHHHHHHHHhcCCCC----------------cEEEecC--cCCHHHHHHHcCEEEec
Q 016053 308 SVHAVIIGSDMNAQTKFESELRNYVMQKKIQD----------------RVHFVNK--TLTVAPYLAAIDVLVQN 363 (396)
Q Consensus 308 ~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~----------------~V~~~g~--~~~~~~~~~~aDv~v~p 363 (396)
.-.++++|.+.... ...+++++++++++.+- .+-+.|. .....+++..||+++.-
T Consensus 12 ~rP~il~G~g~~~~-~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 12 KRPVILAGRGARRS-GAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAI 84 (137)
T ss_dssp SSEEEEE-HHHHHT-TCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEE
T ss_pred CCEEEEEcCCcChh-hHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEE
Confidence 34577777664211 24677777887777661 1112222 24567899999998753
No 317
>PRK09134 short chain dehydrogenase; Provisional
Probab=47.38 E-value=79 Score=27.90 Aligned_cols=22 Identities=18% Similarity=-0.026 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEec
Q 016053 91 LLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
-.=..+++.|.++|++|.++..
T Consensus 20 giG~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 20 RIGRAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 4556788888899999987764
No 318
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=47.32 E-value=46 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=22.3
Q ss_pred CCCChH--HHHHHHHHHHHhCCCEEEEEe
Q 016053 85 SLSGGP--LLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 85 ~~gG~~--~~~~~l~~~L~~~G~~V~vi~ 111 (396)
.-||.. +...+|+.+|.+.|++|.++-
T Consensus 11 ~KGGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345554 678999999999999999995
No 319
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=47.06 E-value=41 Score=29.98 Aligned_cols=34 Identities=26% Similarity=0.057 Sum_probs=26.9
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
.+|++++...+.|| --.-+++.|.++|++|.|+.
T Consensus 61 ~~V~VlcG~GNNGG---DGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 61 PRVLLVCGPGNNGG---DGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CeEEEEECCCCCch---hHHHHHHHHHHCCCeEEEEE
Confidence 37999887777776 34455788889999999998
No 320
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.88 E-value=90 Score=27.37 Aligned_cols=33 Identities=21% Similarity=0.142 Sum_probs=23.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|+++|+ ||....-..+++.|.++|++|.++...
T Consensus 3 k~vlIt-----G~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 3 PVALVT-----GGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred cEEEEe-----CCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 455666 344457778888999999999887633
No 321
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=46.75 E-value=41 Score=28.62 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=28.2
Q ss_pred cEEEEEeccCCC-CChH-HHHHHHHHHHHhCC-CEEEEEe
Q 016053 75 KLVLLVSHELSL-SGGP-LLLMELAFLLRGVG-TKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G-~~V~vi~ 111 (396)
||||+|...... ++.. .....+++.+++.| ++|.++-
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~d 40 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRD 40 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 589998866555 4554 77788999999999 9999986
No 322
>PRK06703 flavodoxin; Provisional
Probab=46.59 E-value=43 Score=27.01 Aligned_cols=36 Identities=8% Similarity=-0.028 Sum_probs=27.6
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|+|+++... ..|-.+.....+++.|...|++|.+.-
T Consensus 2 mkv~IiY~S-~tGnT~~iA~~ia~~l~~~g~~v~~~~ 37 (151)
T PRK06703 2 AKILIAYAS-MSGNTEDIADLIKVSLDAFDHEVVLQE 37 (151)
T ss_pred CeEEEEEEC-CCchHHHHHHHHHHHHHhcCCceEEEe
Confidence 366666533 346667999999999999999998875
No 323
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=46.50 E-value=1e+02 Score=28.92 Aligned_cols=80 Identities=9% Similarity=-0.020 Sum_probs=45.5
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+..+|+++... ..+....++..+...|.++.++++..-...........+.....|..+........ ...+.|
T Consensus 155 ~g~~ia~vGD~-----~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~e--a~~~aD 227 (336)
T PRK03515 155 NEMTLAYAGDA-----RNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAE--GVKGAD 227 (336)
T ss_pred CCCEEEEeCCC-----cCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHH--HhCCCC
Confidence 34688888642 12367778888888899999999765432222221122233334544433222222 125789
Q ss_pred EEEEcCc
Q 016053 153 LIVLNTA 159 (396)
Q Consensus 153 iV~~~~~ 159 (396)
+|+....
T Consensus 228 vvytd~W 234 (336)
T PRK03515 228 FIYTDVW 234 (336)
T ss_pred EEEecCc
Confidence 9988753
No 324
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=46.43 E-value=1.6e+02 Score=25.75 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=39.4
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcE
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (396)
.++||+|. ||... ..=++.|.+.|-+|+|+++.-.. .+........+.+..-..... ...++++
T Consensus 25 ~~~VLVVG------GG~VA-~RK~~~Ll~~gA~VtVVap~i~~-------el~~l~~~~~i~~~~r~~~~~--dl~g~~L 88 (223)
T PRK05562 25 KIKVLIIG------GGKAA-FIKGKTFLKKGCYVYILSKKFSK-------EFLDLKKYGNLKLIKGNYDKE--FIKDKHL 88 (223)
T ss_pred CCEEEEEC------CCHHH-HHHHHHHHhCCCEEEEEcCCCCH-------HHHHHHhCCCEEEEeCCCChH--HhCCCcE
Confidence 34666664 54444 44456677789999999965321 122222333455554322211 2257899
Q ss_pred EEEcCc
Q 016053 154 IVLNTA 159 (396)
Q Consensus 154 V~~~~~ 159 (396)
|++.+.
T Consensus 89 ViaATd 94 (223)
T PRK05562 89 IVIATD 94 (223)
T ss_pred EEECCC
Confidence 988763
No 325
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=46.41 E-value=1.5e+02 Score=29.43 Aligned_cols=96 Identities=21% Similarity=0.194 Sum_probs=47.8
Q ss_pred CChH-HHHHHHHHHHHh--------CCC----EEEEEeccCCCCch-hhhhhhhhhhhhcceEEEEcCch------h---
Q 016053 87 SGGP-LLLMELAFLLRG--------VGT----KVNWITIQKPSEED-EVIYSLEHKMWDRGVQVISAKGQ------E--- 143 (396)
Q Consensus 87 gG~~-~~~~~l~~~L~~--------~G~----~V~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~--- 143 (396)
.||+ .++.+++++|.+ +|. +|.++|..-+...+ .....++......+..++.++.. +
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S--
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhcc
Confidence 4555 999999999975 343 47788843332222 22222333333344555433211 0
Q ss_pred ------------------hhh--hccCCcEEEEcCchhhHHHH-HHHhcCCCccccceeeeeeec
Q 016053 144 ------------------TIN--TALKADLIVLNTAVAGKWLD-AVLKEDVPRVLPNVLWWIHEM 187 (396)
Q Consensus 144 ------------------~~~--~~~~~DiV~~~~~~~~~~~~-~~~~~~~~~~~~~vv~~~h~~ 187 (396)
.+. ....||+||.|..-++.... .+.+.++| ...+.|..
T Consensus 375 srf~lWPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~-----~~~iaHsL 434 (550)
T PF00862_consen 375 SRFDLWPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVT-----QCFIAHSL 434 (550)
T ss_dssp -GGG-GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-E-----EEEE-SS-
T ss_pred chhhchhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCc-----eehhhhcc
Confidence 111 12789999999976665443 33455654 56677765
No 326
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=46.37 E-value=1.7e+02 Score=26.93 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=54.6
Q ss_pred HHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCC
Q 016053 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ 338 (396)
Q Consensus 259 ~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~ 338 (396)
-+++.+|- -+...|.|+|-..+..=...++.+++.+ ++++.++++..-. ..+++.+.+++.|.
T Consensus 140 Ti~e~~g~-l~g~~va~vGD~~~~~v~~Sl~~~~a~~------------g~~v~~~~P~~~~---~~~~~~~~~~~~G~- 202 (301)
T TIGR00670 140 TIYEEFGR-LDGLKIALVGDLKYGRTVHSLAEALTRF------------GVEVYLISPEELR---MPKEILEELKAKGI- 202 (301)
T ss_pred HHHHHhCC-CCCCEEEEEccCCCCcHHHHHHHHHHHc------------CCEEEEECCcccc---CCHHHHHHHHHcCC-
Confidence 35566663 4567899999754455566666666653 6899999975311 12344455555442
Q ss_pred CcEEEecCcCCHHHHHHHcCEEEecCC
Q 016053 339 DRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 339 ~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (396)
.|.+ .+++.+.++.|||+...+.
T Consensus 203 -~v~~---~~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 203 -KVRE---TESLEEVIDEADVLYVTRI 225 (301)
T ss_pred -EEEE---ECCHHHHhCCCCEEEECCc
Confidence 3332 3688999999999887654
No 327
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=46.20 E-value=32 Score=29.14 Aligned_cols=34 Identities=9% Similarity=-0.098 Sum_probs=25.2
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
|||.+|.... +.=..+++...++||+|+.++...
T Consensus 1 mKIaiIgAsG------~~Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASG------KAGSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCc------hhHHHHHHHHHhCCCeeEEEEeCh
Confidence 5888887432 344567788889999999998543
No 328
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=45.90 E-value=98 Score=27.09 Aligned_cols=81 Identities=23% Similarity=0.223 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhh-hcceEEEEcCc--hhhhhh--ccCCcEEEEcCc---
Q 016053 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMW-DRGVQVISAKG--QETINT--ALKADLIVLNTA--- 159 (396)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~DiV~~~~~--- 159 (396)
|+.++=..+|+.|.+.||+|.++-..... ..+... ......+.... ...+.+ ..++|++++-+.
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~--------~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEER--------VEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHHH--------HHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 44488899999999999999999744321 222122 23444443332 223332 268899987663
Q ss_pred hhhHHHHHHHh-cCCCcc
Q 016053 160 VAGKWLDAVLK-EDVPRV 176 (396)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~ 176 (396)
........+.+ .++|.+
T Consensus 79 ~N~i~~~la~~~~gv~~v 96 (225)
T COG0569 79 VNSVLALLALKEFGVPRV 96 (225)
T ss_pred HHHHHHHHHHHhcCCCcE
Confidence 23333333434 466653
No 329
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=45.72 E-value=1.1e+02 Score=28.80 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=43.7
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+..+|+++.... ..+...++..+...|.+|.++++..-...........+.....|..+....... ....+.|
T Consensus 155 ~gl~ia~vGD~~-----~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~--~a~~~aD 227 (334)
T PRK01713 155 SEISYVYIGDAR-----NNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDID--KAVKGVD 227 (334)
T ss_pred CCcEEEEECCCc-----cCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHH--HHhCCCC
Confidence 346898887421 136777888888899999999876433222221112222233454443222221 1225789
Q ss_pred EEEEcC
Q 016053 153 LIVLNT 158 (396)
Q Consensus 153 iV~~~~ 158 (396)
+|++..
T Consensus 228 vVyt~~ 233 (334)
T PRK01713 228 FVHTDV 233 (334)
T ss_pred EEEEcc
Confidence 998753
No 330
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=45.69 E-value=61 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=27.7
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
+++++||+++.... +....+..+-+.+.++|+++.+....
T Consensus 1 ~~~~~ILl~C~~G~--sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 1 MNETNILLLCAAGM--STSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CCccEEEEECCCch--hHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 35578999985321 12366677888888899998877643
No 331
>PRK05920 aromatic acid decarboxylase; Validated
Probab=45.60 E-value=49 Score=28.53 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=26.9
Q ss_pred ccEEEEEeccCCCCCh-HHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 74 SKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
+|||++... ||. .....++++.|.+.|++|.++..+.
T Consensus 3 ~krIllgIT----Gsiaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAIT----GASGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEe----CHHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 356665542 222 3788899999999999999998553
No 332
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=45.49 E-value=37 Score=31.75 Aligned_cols=42 Identities=19% Similarity=-0.055 Sum_probs=30.6
Q ss_pred ccccEEEEEeccCCC-CChH-HHHHHHHHHHHhCCCEEEEEecc
Q 016053 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 72 m~~~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|+++||+++....+. .-.. ......+++|.+.||+|..+...
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~ 44 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGIT 44 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEEC
Confidence 567789999854433 2222 66778999999999999988744
No 333
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=45.46 E-value=57 Score=27.75 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=28.0
Q ss_pred cEEEEEeccCCCCChH-HHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|||++++.....++-. ..+...++.+.+.|+++.++.
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~id 38 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWN 38 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEE
Confidence 4788888766666655 566666678888999999886
No 334
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.38 E-value=69 Score=27.32 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCC-----------CccHHHHHHHhcCCCEEEcCCC
Q 016053 324 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGE-----------CFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 324 ~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E-----------~fg~~~lEAma~G~PVI~t~~g 391 (396)
....+.+..+.+|.+ +.+....++ +..+|.+|+|.- .+ +....+.++...|+||++.-.|
T Consensus 11 n~~~~~~~l~~~g~~--v~~~~~~~~----l~~~d~lilpG~--g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G 81 (199)
T PRK13181 11 NLRSVANALKRLGVE--AVVSSDPEE----IAGADKVILPGV--GAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLG 81 (199)
T ss_pred hHHHHHHHHHHCCCc--EEEEcChHH----hccCCEEEECCC--CCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHh
Confidence 456666677777754 555543332 467899998874 22 3345577888899999987655
No 335
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=45.36 E-value=1.6e+02 Score=28.31 Aligned_cols=84 Identities=13% Similarity=0.025 Sum_probs=47.9
Q ss_pred ccEEEEEecc-CCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 74 SKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 74 ~~kIl~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
.++|+++... ...|-..++...++..+...|.+|.++++.+-...........+.....|..+....... ....+.|
T Consensus 187 g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~--eav~~aD 264 (395)
T PRK07200 187 GKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSME--EAFKDAD 264 (395)
T ss_pred CCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHH--HHhCCCC
Confidence 3478887642 233444588899999999999999999976432111111111112233454443222221 2235789
Q ss_pred EEEEcCc
Q 016053 153 LIVLNTA 159 (396)
Q Consensus 153 iV~~~~~ 159 (396)
+|+....
T Consensus 265 vVYtd~W 271 (395)
T PRK07200 265 IVYPKSW 271 (395)
T ss_pred EEEEcCe
Confidence 9988754
No 336
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=45.22 E-value=47 Score=24.95 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=19.9
Q ss_pred CCCEEEEEEecCCCccchHHHHHHHHHHhcC
Q 016053 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKK 336 (396)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~ 336 (396)
+|+.+++++|+....| .+-..+++++..
T Consensus 62 fP~~kfiLIGDsgq~D---peiY~~ia~~~P 89 (100)
T PF09949_consen 62 FPERKFILIGDSGQHD---PEIYAEIARRFP 89 (100)
T ss_pred CCCCcEEEEeeCCCcC---HHHHHHHHHHCC
Confidence 3899999999976554 455566676653
No 337
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.05 E-value=65 Score=27.95 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=24.7
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|++|+|++.. |....=..+++.|.++|++|.+++..
T Consensus 4 ~~~~~vlItG------asg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTG------AARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeC------CCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4456777654 22346677888889999999776644
No 338
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=44.80 E-value=1.2e+02 Score=23.91 Aligned_cols=77 Identities=22% Similarity=0.337 Sum_probs=45.4
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCE-EEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccC
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTK-VNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~-V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (396)
.+.++++++.. || .....+.+|.+.|.+ |+++. +.. .....+.+.+....+.+....... ....+
T Consensus 10 l~~~~vlviGa----Gg---~ar~v~~~L~~~g~~~i~i~n-Rt~----~ra~~l~~~~~~~~~~~~~~~~~~--~~~~~ 75 (135)
T PF01488_consen 10 LKGKRVLVIGA----GG---AARAVAAALAALGAKEITIVN-RTP----ERAEALAEEFGGVNIEAIPLEDLE--EALQE 75 (135)
T ss_dssp GTTSEEEEESS----SH---HHHHHHHHHHHTTSSEEEEEE-SSH----HHHHHHHHHHTGCSEEEEEGGGHC--HHHHT
T ss_pred cCCCEEEEECC----HH---HHHHHHHHHHHcCCCEEEEEE-CCH----HHHHHHHHHcCccccceeeHHHHH--HHHhh
Confidence 34568998873 44 556667888888988 66665 321 112223334434456666665443 23357
Q ss_pred CcEEEEcCchhh
Q 016053 151 ADLIVLNTAVAG 162 (396)
Q Consensus 151 ~DiV~~~~~~~~ 162 (396)
+|+|+..++...
T Consensus 76 ~DivI~aT~~~~ 87 (135)
T PF01488_consen 76 ADIVINATPSGM 87 (135)
T ss_dssp ESEEEE-SSTTS
T ss_pred CCeEEEecCCCC
Confidence 999998886543
No 339
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=44.56 E-value=3.1e+02 Score=26.67 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=49.5
Q ss_pred EEEEEEecCCCc--cchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHH--hcC
Q 016053 309 VHAVIIGSDMNA--QTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAM--AFQ 382 (396)
Q Consensus 309 ~~l~ivG~g~~~--~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAm--a~G 382 (396)
-.+.|+|..... .+.+..+++++.++.|++.+..|.+.. +|+.. +.+|++-+..+. .+|..+.|+| -+|
T Consensus 163 ~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~-~~~A~lniv~~~----~~~~~~a~~L~~~~G 237 (430)
T cd01981 163 PSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNE-LPKAWFNIVPYR----EYGLSAALYLEEEFG 237 (430)
T ss_pred CcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHh-hhhCeEEEEecH----HHHHHHHHHHHHHhC
Confidence 468888875421 135778999999999999877777653 45444 445555444332 2356666666 479
Q ss_pred CCEEEc
Q 016053 383 LPVLVL 388 (396)
Q Consensus 383 ~PVI~t 388 (396)
+|.+..
T Consensus 238 iP~~~~ 243 (430)
T cd01981 238 MPSVKI 243 (430)
T ss_pred CCeEec
Confidence 998865
No 340
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=44.52 E-value=1.4e+02 Score=29.11 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=25.1
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
.|||++.. |....=..|++.|.++|++|.++..
T Consensus 120 ~mkILVTG------atGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTG------GAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCEEEEEC------CccHHHHHHHHHHHHCCCEEEEEeC
Confidence 36877554 4456778889999999999998863
No 341
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=44.43 E-value=58 Score=27.45 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHh
Q 016053 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ 334 (396)
Q Consensus 282 ~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~ 334 (396)
.-+...+.+++++|. ++|++..+++|+|.+--.+-++.++++++.
T Consensus 154 ~~d~~~a~~sl~RLa--------~~~~fe~lLvGdGwpi~~~~r~rl~~L~~~ 198 (199)
T PF14597_consen 154 LYDPTEARASLRRLA--------AYPDFEWLLVGDGWPIFRDARQRLRELVAT 198 (199)
T ss_dssp -S-HHHHHHHHHHHH--------T-TT--EEEESBB--B-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh--------ccccccEEeecCCchhhhhHHHHHHHHHhc
Confidence 456677778887775 458999999999986555567777777653
No 342
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=44.43 E-value=1.5e+02 Score=28.92 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=46.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch--------hhhh-
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--------ETIN- 146 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~- 146 (396)
.|+++. ....|=.+.+..||..|+++|+.|.+++.+.... .....+.......+++++..... ..+.
T Consensus 102 vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~--aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 102 VIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA--GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch--hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 455555 3334555899999999999999999998553221 11112222333456666543211 0111
Q ss_pred -hccCCcEEEEcCc
Q 016053 147 -TALKADLIVLNTA 159 (396)
Q Consensus 147 -~~~~~DiV~~~~~ 159 (396)
+..++|+|++.++
T Consensus 178 ~~~~~~DvViIDTa 191 (429)
T TIGR01425 178 FKKENFDIIIVDTS 191 (429)
T ss_pred HHhCCCCEEEEECC
Confidence 2357999999885
No 343
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=44.26 E-value=42 Score=28.46 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=27.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
++||+|.++. .++++|++++.+.|++|+|+-.+
T Consensus 2 ~~IL~IDNyD------SFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 2 MMILLIDNYD------SFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred ceEEEEECcc------chHHHHHHHHHHcCCceEEEECC
Confidence 5799998543 48899999999999999999855
No 344
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=43.91 E-value=63 Score=25.93 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=25.4
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|.+++ .....|......+++..|.+.|.+|.++-..
T Consensus 3 i~v~s-~~~g~G~t~~a~~lA~~la~~~~~Vllid~~ 38 (157)
T PF13614_consen 3 IAVWS-PKGGVGKTTLALNLAAALARKGKKVLLIDFD 38 (157)
T ss_dssp EEEEE-SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--
T ss_pred EEEEC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 44444 3445677799999999999999997777633
No 345
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=43.62 E-value=41 Score=30.17 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=25.7
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCC
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 115 (396)
+|+||+.+...-.. .=+..|.++|++.| +|+|+++...
T Consensus 5 ~M~ILltNDDGi~a---~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 5 KPHILVCNDDGIEG---EGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCEEEEECCCCCCC---HHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 46899776532221 45677778888888 8999986543
No 346
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=43.43 E-value=2.2e+02 Score=25.87 Aligned_cols=61 Identities=5% Similarity=0.125 Sum_probs=37.8
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc-----CCHHHHHHHcCEEEecCCCCCCCccHHHHH
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT-----LTVAPYLAAIDVLVQNSQAWGECFGRITIE 377 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-----~~~~~~~~~aDv~v~pS~~~~E~fg~~~lE 377 (396)
+.-..+++|++. .. .+++....-.+++.-+|+. +.+..|+..-||++.--. .=..++.+++
T Consensus 210 ~~~~vI~vGDs~-------~D-l~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~--t~~v~~~il~ 275 (277)
T TIGR01544 210 DRSNIILLGDSQ-------GD-LRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDE--TLEVANSILQ 275 (277)
T ss_pred CcceEEEECcCh-------hh-hhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCC--CchHHHHHHh
Confidence 456789999985 11 2234422223578888874 348889999999987443 3334555554
No 347
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=43.29 E-value=1.5e+02 Score=27.82 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=43.7
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+..+|+++.... ...+..++..+...|.+|.++++..............+.....|..+........ ...+.|
T Consensus 154 ~g~~va~vGd~~-----~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~e--a~~~aD 226 (331)
T PRK02102 154 KGLKLAYVGDGR-----NNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEE--AVKGAD 226 (331)
T ss_pred CCCEEEEECCCc-----ccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHH--HhCCCC
Confidence 456898886321 2478888888899999999999765432222221122222333444322222211 125778
Q ss_pred EEEEc
Q 016053 153 LIVLN 157 (396)
Q Consensus 153 iV~~~ 157 (396)
+|+..
T Consensus 227 vvyt~ 231 (331)
T PRK02102 227 VIYTD 231 (331)
T ss_pred EEEEc
Confidence 88874
No 348
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=43.27 E-value=1.8e+02 Score=28.79 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=57.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCC---chhhhhhhhhhhhhcceEEEEcCchhhhhhccCC
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSE---EDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (396)
..+++++-.....-.+..+.+++.+|.+.|+.+.+........ .......+.+.....|+.+..--....+......
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v 362 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAV 362 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCc
Confidence 3566676432222224669999999999999999887432211 0111112223333445544333334445554567
Q ss_pred cEEEEcCchhhHHHHHHHhcCCCcc
Q 016053 152 DLIVLNTAVAGKWLDAVLKEDVPRV 176 (396)
Q Consensus 152 DiV~~~~~~~~~~~~~~~~~~~~~~ 176 (396)
+..+.|+..... ..+...++|.+
T Consensus 363 ~~fvtH~G~nS~--~Eal~~GvP~l 385 (477)
T PLN02863 363 GAFLTHCGWNSV--LEGLVAGVPML 385 (477)
T ss_pred CeEEecCCchHH--HHHHHcCCCEE
Confidence 889999877654 35566787754
No 349
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.98 E-value=46 Score=30.76 Aligned_cols=39 Identities=23% Similarity=0.078 Sum_probs=29.1
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|+++||+++... ..+.....+.++.+.|.+.|++|.+..
T Consensus 1 ~~~kkv~lI~n~-~~~~~~~~~~~i~~~L~~~g~~v~v~~ 39 (305)
T PRK02645 1 MQLKQVIIAYKA-GSSQAKEAAERCAKQLEARGCKVLMGP 39 (305)
T ss_pred CCcCEEEEEEeC-CCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 677789998764 122333678888888999999999876
No 350
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=42.89 E-value=1.1e+02 Score=27.55 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=47.9
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEE
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVL 386 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI 386 (396)
++++++.+-+- ..+..++.+++++... ..+++.+++..+|+++..+. .+...-...+++..|++|+
T Consensus 30 ~~~el~aV~dr------~~~~a~~~a~~~g~~~------~~~~~eell~~~D~Vvi~tp--~~~h~e~~~~aL~aGk~Vi 95 (271)
T PRK13302 30 PGLTLSAVAVR------DPQRHADFIWGLRRPP------PVVPLDQLATHADIVVEAAP--ASVLRAIVEPVLAAGKKAI 95 (271)
T ss_pred CCeEEEEEECC------CHHHHHHHHHhcCCCc------ccCCHHHHhcCCCEEEECCC--cHHHHHHHHHHHHcCCcEE
Confidence 57777755543 2344555666554221 13567788889999998777 5655666788999999999
Q ss_pred EcCCC
Q 016053 387 VLSEL 391 (396)
Q Consensus 387 ~t~~g 391 (396)
+...+
T Consensus 96 ~~s~g 100 (271)
T PRK13302 96 VLSVG 100 (271)
T ss_pred Eecch
Confidence 87654
No 351
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=42.69 E-value=1.7e+02 Score=26.25 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=49.0
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCC-----CcEEEecCc---------------------------CCHHHHH
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-----DRVHFVNKT---------------------------LTVAPYL 354 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-----~~V~~~g~~---------------------------~~~~~~~ 354 (396)
.+.+++++|.|.-+- .--+.+.+...+.|+. .+|.++... .++.+.+
T Consensus 24 ~d~riv~~GAGsAg~-gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav 102 (255)
T PF03949_consen 24 SDQRIVFFGAGSAGI-GIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAV 102 (255)
T ss_dssp GG-EEEEEB-SHHHH-HHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHH
T ss_pred HHcEEEEeCCChhHH-HHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHHH
Confidence 678999999875211 1223333333334875 677776521 1678888
Q ss_pred HHc--CEEEecC-CCCCCCccHHHHHHHhc--CCCEEE
Q 016053 355 AAI--DVLVQNS-QAWGECFGRITIEAMAF--QLPVLV 387 (396)
Q Consensus 355 ~~a--Dv~v~pS-~~~~E~fg~~~lEAma~--G~PVI~ 387 (396)
..+ |++|=.| . .-.|.--++++|+- -.|+|-
T Consensus 103 ~~~kPtvLIG~S~~--~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 103 KGAKPTVLIGLSGQ--GGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp HCH--SEEEECSSS--TTSS-HHHHHHCHHHSSSEEEE
T ss_pred HhcCCCEEEEecCC--CCcCCHHHHHHHhccCCCCEEE
Confidence 888 9999888 5 77788889999975 467664
No 352
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=42.57 E-value=1e+02 Score=26.64 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=39.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHh-cCCCCcEEEecCcCCHHHHHHHc
Q 016053 279 VSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQ-KKIQDRVHFVNKTLTVAPYLAAI 357 (396)
Q Consensus 279 l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~-~~l~~~V~~~g~~~~~~~~~~~a 357 (396)
++|.|- +.+.+.++++.+ .....+++|+...-+.+...++.+.+++ .+++ -+.|-|..+. +-..+
T Consensus 5 iDP~k~-e~~~~ia~~v~~---------~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lP-vilfp~~~~~---i~~~a 70 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKD---------AGTDAIMVGGSLGIVESNLDQTVKKIKKITNLP-VILFPGNVNG---LSRYA 70 (205)
T ss_pred cCCCcH-HHHHHHHHHHHh---------cCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCC-EEEECCCccc---cCcCC
Confidence 455555 444444444432 3467778874321122233344455555 4555 4556665443 33569
Q ss_pred CEEEecCC
Q 016053 358 DVLVQNSQ 365 (396)
Q Consensus 358 Dv~v~pS~ 365 (396)
|.+++||.
T Consensus 71 D~~~~~sl 78 (205)
T TIGR01769 71 DAVFFMSL 78 (205)
T ss_pred CEEEEEEe
Confidence 99998885
No 353
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=42.36 E-value=2.3e+02 Score=24.58 Aligned_cols=84 Identities=12% Similarity=0.016 Sum_probs=49.8
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC-------cCCHHHHHHHcCEEEecCCC-------CCC-Cc
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK-------TLTVAPYLAAIDVLVQNSQA-------WGE-CF 371 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~-------~~~~~~~~~~aDv~v~pS~~-------~~E-~f 371 (396)
.+.+++++........++.+++.+..+++|.. .+.++-. .+++.+.+..+|++++..-. |.+ +.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l 106 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL 106 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChH
Confidence 35566666554322234566677777777765 2333321 23567889999988775321 122 22
Q ss_pred cHHHHHHHhcCCCEEEcCCC
Q 016053 372 GRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 372 g~~~lEAma~G~PVI~t~~g 391 (396)
--.+.++...|.|++.+..|
T Consensus 107 ~~~l~~~~~~G~v~~G~SAG 126 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAG 126 (217)
T ss_pred HHHHHHHHHcCCEEEEccHH
Confidence 23566778889998887754
No 354
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.30 E-value=1.8e+02 Score=23.50 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCCEEEEEEecccCC--CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 016053 268 NEDLLFAIINSVSRG--KGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (396)
Q Consensus 268 ~~~~~il~vG~l~~~--Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~ 318 (396)
..+.+++.+|..+.. .+.+.+.+.+..+.+.+++ .+++.++++++.-+
T Consensus 48 ~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~---~~~~~~vi~~~~~p 97 (169)
T cd01828 48 QPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRK---HFPNIKIVVQSILP 97 (169)
T ss_pred CCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHH---HCCCCeEEEEecCC
Confidence 347888888876654 4478888888888777765 34788999988644
No 355
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=41.91 E-value=54 Score=28.19 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=26.4
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.+.++|+++. || ......++.|.+.|++|+|+.+.
T Consensus 8 l~~k~vLVIG-----gG--~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVG-----GG--KVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEEC-----CC--HHHHHHHHHHHHCCCeEEEEcCC
Confidence 3456788775 33 56677888899999999999743
No 356
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=41.84 E-value=1.7e+02 Score=27.55 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=44.2
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+..+|+++... .+....++..+...|.+|+++++..-...........+.....|..+....... ..-.+.|
T Consensus 153 ~glkv~~vGD~------~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~--eav~~aD 224 (338)
T PRK02255 153 EDCKVVFVGDA------TQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVD--EAVKDAD 224 (338)
T ss_pred CCCEEEEECCC------chHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHH--HHhCCCC
Confidence 34688888641 368899999999999999999976432222221111222222343332222221 1235779
Q ss_pred EEEEcC
Q 016053 153 LIVLNT 158 (396)
Q Consensus 153 iV~~~~ 158 (396)
+|+...
T Consensus 225 vvy~~~ 230 (338)
T PRK02255 225 FVYTDV 230 (338)
T ss_pred EEEEcc
Confidence 888843
No 357
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=41.79 E-value=55 Score=27.99 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=28.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHh-CCCEEEEEec
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITI 112 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~ 112 (396)
|||+++.... .|-.++....+++.+.+ .|.+|.++.-
T Consensus 2 ~kilIvy~S~-~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSM-YGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCC-CCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 4788888544 24455888889999988 9999999874
No 358
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=41.79 E-value=50 Score=24.76 Aligned_cols=78 Identities=26% Similarity=0.209 Sum_probs=43.1
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+.++|+++. || .....-++.|.+.|.+|+|+++... .....++...... . ....++|
T Consensus 6 ~~~~vlVvG-----gG--~va~~k~~~Ll~~gA~v~vis~~~~-------------~~~~~i~~~~~~~-~--~~l~~~~ 62 (103)
T PF13241_consen 6 KGKRVLVVG-----GG--PVAARKARLLLEAGAKVTVISPEIE-------------FSEGLIQLIRREF-E--EDLDGAD 62 (103)
T ss_dssp TT-EEEEEE-----ES--HHHHHHHHHHCCCTBEEEEEESSEH-------------HHHTSCEEEESS--G--GGCTTES
T ss_pred CCCEEEEEC-----CC--HHHHHHHHHHHhCCCEEEEECCchh-------------hhhhHHHHHhhhH-H--HHHhhhe
Confidence 456888876 33 5666778888999999999996530 0112333332222 1 2245689
Q ss_pred EEEEcCch---hhHHHHHHHhcCC
Q 016053 153 LIVLNTAV---AGKWLDAVLKEDV 173 (396)
Q Consensus 153 iV~~~~~~---~~~~~~~~~~~~~ 173 (396)
+|++.+.. .......+...++
T Consensus 63 lV~~at~d~~~n~~i~~~a~~~~i 86 (103)
T PF13241_consen 63 LVFAATDDPELNEAIYADARARGI 86 (103)
T ss_dssp EEEE-SS-HHHHHHHHHHHHHTTS
T ss_pred EEEecCCCHHHHHHHHHHHhhCCE
Confidence 99888732 2223334444554
No 359
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=41.50 E-value=1.3e+02 Score=21.60 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHH
Q 016053 284 GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYL 354 (396)
Q Consensus 284 g~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~ 354 (396)
|....+++++. -..+++|+..+.+ +...+.+.++++..+++ +.+.+..+|+-...
T Consensus 12 G~~~vlkaIk~------------gkakLViiA~Da~--~~~~k~i~~~c~~~~Vp--v~~~~t~~eLG~A~ 66 (82)
T PRK13601 12 GAKQTLKAITN------------CNVLQVYIAKDAE--EHVTKKIKELCEEKSIK--IVYIDTMKELGVMC 66 (82)
T ss_pred chHHHHHHHHc------------CCeeEEEEeCCCC--HHHHHHHHHHHHhCCCC--EEEeCCHHHHHHHH
Confidence 44566666653 5889998887653 24677888888888877 56666555554443
No 360
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=41.46 E-value=30 Score=25.64 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=39.7
Q ss_pred EEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCC
Q 016053 310 HAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 310 ~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (396)
-|.++|.|...+--....+++..+++|++..+.-. ..++...+...+|+++-...
T Consensus 4 IL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~-~v~~~~~~~~~aDiiv~s~~ 58 (93)
T COG3414 4 ILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQC-AVDEIKALTDGADIIVTSTK 58 (93)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeE-EecccccCCCcccEEEEehH
Confidence 36778888765555678899999999986333222 24678888899999997554
No 361
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=41.34 E-value=1e+02 Score=27.20 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCC
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (396)
...-.+++|+...-..+...++.+.+++.+++ -|.|-|..+.+. ..+|.+++||.
T Consensus 31 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lP-vilfp~~~~~i~---~~aDa~l~~sv 85 (232)
T PRK04169 31 SGTDAIIVGGSDGVTEENVDELVKAIKEYDLP-VILFPGNIEGIS---PGADAYLFPSV 85 (232)
T ss_pred cCCCEEEEcCCCccchHHHHHHHHHHhcCCCC-EEEeCCCccccC---cCCCEEEEEEE
Confidence 35667788864322223344555666666665 466666554433 44999988875
No 362
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=41.27 E-value=1.8e+02 Score=23.03 Aligned_cols=95 Identities=13% Similarity=0.173 Sum_probs=56.1
Q ss_pred CCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc
Q 016053 268 NEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT 347 (396)
Q Consensus 268 ~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~ 347 (396)
++++.+....- .++++.+.+...++ +.+.+.+.+. +..+.+++.....+. .+.++...
T Consensus 22 ~d~f~v~~Lsa---~~n~~~L~~q~~~f------------~p~~v~i~~~-----~~~~~l~~~~~~~~~--~~~v~~G~ 79 (129)
T PF02670_consen 22 PDKFEVVALSA---GSNIEKLAEQAREF------------KPKYVVIADE-----EAYEELKKALPSKGP--GIEVLSGP 79 (129)
T ss_dssp TTTEEEEEEEE---SSTHHHHHHHHHHH------------T-SEEEESSH-----HHHHHHHHHHHHTTS--SSEEEESH
T ss_pred CCceEEEEEEc---CCCHHHHHHHHHHh------------CCCEEEEcCH-----HHHHHHHHHhhhcCC--CCEEEeCh
Confidence 56777765544 89999999988875 3344666653 245556655532232 35555444
Q ss_pred CCHHHHHH--HcCEEEecCCCCCCCcc-HHHHHHHhcCCCEEE
Q 016053 348 LTVAPYLA--AIDVLVQNSQAWGECFG-RITIEAMAFQLPVLV 387 (396)
Q Consensus 348 ~~~~~~~~--~aDv~v~pS~~~~E~fg-~~~lEAma~G~PVI~ 387 (396)
+.+.++.. .+|++|.... -.-| ...++|+..|+-+--
T Consensus 80 ~~l~~~~~~~~~D~vv~Ai~---G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 80 EGLEELAEEPEVDIVVNAIV---GFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp HHHHHHHTHTT-SEEEE--S---SGGGHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCCCEEEEeCc---ccchHHHHHHHHHCCCeEEE
Confidence 55556655 6788887655 2223 346889888876543
No 363
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=41.25 E-value=86 Score=22.20 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=27.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
+.++++.+.. +........+++.|.++|+.|..+-..+
T Consensus 16 k~~v~i~HG~--~eh~~ry~~~a~~L~~~G~~V~~~D~rG 53 (79)
T PF12146_consen 16 KAVVVIVHGF--GEHSGRYAHLAEFLAEQGYAVFAYDHRG 53 (79)
T ss_pred CEEEEEeCCc--HHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 4577777644 3333688999999999999999876433
No 364
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=41.19 E-value=1.8e+02 Score=28.52 Aligned_cols=86 Identities=23% Similarity=0.242 Sum_probs=45.0
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+.++|+++.- ||. =+..+++.|.++|++|++.-. ...+ . . ..+...|+.++.-.... ...++|
T Consensus 6 ~~~~v~viG~----G~s--G~s~~a~~L~~~G~~V~~~D~-~~~~--~----~-~~l~~~gi~~~~~~~~~---~~~~~d 68 (461)
T PRK00421 6 RIKRIHFVGI----GGI--GMSGLAEVLLNLGYKVSGSDL-KESA--V----T-QRLLELGAIIFIGHDAE---NIKDAD 68 (461)
T ss_pred CCCEEEEEEE----chh--hHHHHHHHHHhCCCeEEEECC-CCCh--H----H-HHHHHCCCEEeCCCCHH---HCCCCC
Confidence 3457887762 221 122367889999999977532 2211 1 1 22444576665311111 123688
Q ss_pred EEEEcCc--hhhHHHHHHHhcCCCc
Q 016053 153 LIVLNTA--VAGKWLDAVLKEDVPR 175 (396)
Q Consensus 153 iV~~~~~--~~~~~~~~~~~~~~~~ 175 (396)
+|+.... .....+..+...++|.
T Consensus 69 ~vv~spgi~~~~~~~~~a~~~~i~i 93 (461)
T PRK00421 69 VVVYSSAIPDDNPELVAARELGIPV 93 (461)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCcE
Confidence 8876652 2234445555555553
No 365
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=41.17 E-value=2.2e+02 Score=25.33 Aligned_cols=85 Identities=9% Similarity=0.134 Sum_probs=60.9
Q ss_pred EEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc-cchHHHHHHHHHHhcCCCCcEEEecC----
Q 016053 272 LFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA-QTKFESELRNYVMQKKIQDRVHFVNK---- 346 (396)
Q Consensus 272 ~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~~~l~~~~~~~~l~~~V~~~g~---- 346 (396)
.++++|-+.-.-|.+.+-+-+..++++. .+.|+|+...... .....++.-+...+.|. ++.-+|-
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky--------k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~--dviT~GNH~wd 71 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY--------KIDFVIVNGENAAGGFGITEKIYKELLEAGA--DVITLGNHTWD 71 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh--------cCcEEEEcCccccCCcCCCHHHHHHHHHhCC--CEEeccccccc
Confidence 5789999999999998888888877542 5678888754321 12244455555556675 3666773
Q ss_pred cCCHHHHHHHcCEEEecCCC
Q 016053 347 TLTVAPYLAAIDVLVQNSQA 366 (396)
Q Consensus 347 ~~~~~~~~~~aDv~v~pS~~ 366 (396)
+.|+.+++...+.+|=|..+
T Consensus 72 ~~ei~~~i~~~~~ilRP~N~ 91 (266)
T COG1692 72 QKEILDFIDNADRILRPANY 91 (266)
T ss_pred chHHHHHhhcccceeccCCC
Confidence 47899999999999988774
No 366
>PRK03094 hypothetical protein; Provisional
Probab=41.14 E-value=16 Score=26.03 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 88 GGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|.|.-+.++.++|+++||+|.=+.
T Consensus 5 aVE~~Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 5 GVEQSLTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred EeecCcHHHHHHHHHCCCEEEecC
Confidence 345567789999999999998664
No 367
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=41.12 E-value=1.2e+02 Score=28.37 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=27.2
Q ss_pred EEEEeccCCCCChH--HHHHHHHHHHHhCCCEEEEEecc
Q 016053 77 VLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 77 Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|..|.+ ...||.. -.+..|++.|+++|+.+.|++..
T Consensus 37 VIsVGN-ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 37 VISVGN-LTVGGTGKTPLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred EEEEcc-cccCCCCchHHHHHHHHHHHhcCCceEEEcCC
Confidence 443433 4555554 88999999999999999999943
No 368
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=41.06 E-value=72 Score=26.36 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=27.7
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
+|+=+.. .+.+|=.+.+..+++.|+++|+.|.++=.
T Consensus 3 ~Il~ivG-~k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 3 KILGIVG-YKNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred cEEEEEe-cCCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 4444443 34466679999999999999999999873
No 369
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=40.98 E-value=1.2e+02 Score=27.87 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC--c-CCHHHHHHHcCEEE
Q 016053 285 QDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--T-LTVAPYLAAIDVLV 361 (396)
Q Consensus 285 ~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--~-~~~~~~~~~aDv~v 361 (396)
.+...+|++.+.+. .++.+++|++++. +.+++.+... .+.+.+.+. . +|+. +++.||.+|
T Consensus 190 ~~Yy~~Ai~~i~~~-------~~~~~f~ifSDD~-------~w~k~~l~~~--~~~~~~~~~~~~~~Dl~-lms~C~~~I 252 (298)
T PF01531_consen 190 KDYYKKAIEYIREK-------VKNPKFFIFSDDI-------EWCKENLKFS--NGDVYFSGNNSPYEDLY-LMSQCKHFI 252 (298)
T ss_pred HHHHHHHHHHHHHh-------CCCCEEEEEcCCH-------HHHHHHHhhc--CCcEEEECCCCHHHHHH-HHHhCCcEE
Confidence 57778888887663 3788999999854 5555555433 245666664 2 6775 689999988
Q ss_pred ecC
Q 016053 362 QNS 364 (396)
Q Consensus 362 ~pS 364 (396)
.+.
T Consensus 253 isn 255 (298)
T PF01531_consen 253 ISN 255 (298)
T ss_pred ECC
Confidence 863
No 370
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=40.95 E-value=60 Score=27.53 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=26.1
Q ss_pred cEEEEEeccCCCCC-hHHHHHHHHHHHHh-CCCEEEEEeccC
Q 016053 75 KLVLLVSHELSLSG-GPLLLMELAFLLRG-VGTKVNWITIQK 114 (396)
Q Consensus 75 ~kIl~v~~~~~~gG-~~~~~~~l~~~L~~-~G~~V~vi~~~~ 114 (396)
|||++... || +.....++++.|.+ .|++|.++..+.
T Consensus 2 k~IllgVT----Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 2 KRLIVGIS----GASGAIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CEEEEEEE----CHHHHHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 46655442 33 34788999999999 599999998553
No 371
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=40.77 E-value=72 Score=24.55 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCH
Q 016053 307 PSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTV 350 (396)
Q Consensus 307 ~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~ 350 (396)
-.+++.|+|+-... ...+.+++++.+.+-.+.+.|+...++.
T Consensus 68 Y~iklAivGD~s~~--~~S~~l~dfi~EsN~G~~~~F~~~~~eA 109 (113)
T PF13788_consen 68 YRIKLAIVGDFSAY--ATSKSLRDFIYESNRGNHFFFVPDEEEA 109 (113)
T ss_pred hceeEEEEEccccc--ccchhHHHHHHHhcCCCeEEEECCHHHH
Confidence 58999999986522 1367899999998877889888866443
No 372
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=40.77 E-value=71 Score=24.22 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=24.7
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|.++||+++|... -|....+..+-...++.|+++.|-.
T Consensus 1 m~~kkIllvC~~G--~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 1 MEKKHIYLFCSAG--MSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCCEEEEECCCC--ccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4457899999522 1222455477777788898887754
No 373
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=40.71 E-value=79 Score=23.88 Aligned_cols=62 Identities=27% Similarity=0.265 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch--hhhh--hccCCcEEEEcC
Q 016053 88 GGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETIN--TALKADLIVLNT 158 (396)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~DiV~~~~ 158 (396)
|..+....+++.|.+.+++|.++..+.. ..+.+...++.++.-... ..+. ...++|.+++.+
T Consensus 5 G~g~~~~~i~~~L~~~~~~vvvid~d~~---------~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGGIDVVVIDRDPE---------RVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESSHH---------HHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred cCCHHHHHHHHHHHhCCCEEEEEECCcH---------HHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 4458999999999998779999985432 333445556666654332 1222 236788887765
No 374
>PRK10481 hypothetical protein; Provisional
Probab=40.49 E-value=1.8e+02 Score=25.51 Aligned_cols=90 Identities=11% Similarity=-0.000 Sum_probs=47.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC---c---CCHHHH
Q 016053 280 SRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK---T---LTVAPY 353 (396)
Q Consensus 280 ~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~---~---~~~~~~ 353 (396)
.|.+++..++.|+. ..-++-|+.+.. +..+...+...+.|.+. .+.+. . +++.+.
T Consensus 114 ~P~~~i~~lv~Al~-------------~g~riGVitP~~----~qi~~~~~kw~~~G~~v--~~~~aspy~~~~~~l~~a 174 (224)
T PRK10481 114 EPSRILPPLVAAIV-------------GGHQVGVIVPVE----EQLAQQAQKWQVLQKPP--VFALASPYHGSEEELIDA 174 (224)
T ss_pred CchhhHHHHHHHhc-------------CCCeEEEEEeCH----HHHHHHHHHHHhcCCce--eEeecCCCCCCHHHHHHH
Confidence 45666666666654 355777887754 22233333344446553 34331 1 122222
Q ss_pred H-----HHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCC
Q 016053 354 L-----AAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSE 390 (396)
Q Consensus 354 ~-----~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~ 390 (396)
- ..+|++|+-.. .-+..+.-.=.-..|+|||.++.
T Consensus 175 a~~L~~~gaD~Ivl~C~--G~~~~~~~~le~~lg~PVI~~n~ 214 (224)
T PRK10481 175 GKELLDQGADVIVLDCL--GYHQRHRDLLQKALDVPVLLSNV 214 (224)
T ss_pred HHHhhcCCCCEEEEeCC--CcCHHHHHHHHHHHCcCEEcHHH
Confidence 2 25889987655 22222222223468999998864
No 375
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=40.42 E-value=1.5e+02 Score=27.84 Aligned_cols=79 Identities=9% Similarity=-0.010 Sum_probs=43.9
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcE
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (396)
..+|+++.... .+....++..+...|.+|+++++..............+.....|..+........ .-.+.|+
T Consensus 156 gl~va~vGD~~-----~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~--a~~~aDv 228 (334)
T PRK12562 156 EMTLVYAGDAR-----NNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAA--GVKGADF 228 (334)
T ss_pred CcEEEEECCCC-----CCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHH--HhCCCCE
Confidence 45788887421 2477888888888999999999765432222221122222333444332222211 1246788
Q ss_pred EEEcCc
Q 016053 154 IVLNTA 159 (396)
Q Consensus 154 V~~~~~ 159 (396)
|+....
T Consensus 229 vyt~~w 234 (334)
T PRK12562 229 IYTDVW 234 (334)
T ss_pred EEEcCc
Confidence 888653
No 376
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.22 E-value=2e+02 Score=27.89 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=45.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhh-------h
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETIN-------T 147 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 147 (396)
.+|+++.+ ...|=.+.+..|+..|..+|..|.+++.+... ......+.......+++++.......+. .
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R--iaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR--IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc--hHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 46777764 33444588899999999999999999855331 1112223333334455555443322221 1
Q ss_pred ccCCcEEEEcCc
Q 016053 148 ALKADLIVLNTA 159 (396)
Q Consensus 148 ~~~~DiV~~~~~ 159 (396)
..++|+|++.++
T Consensus 318 ~~~~DvVLIDTa 329 (436)
T PRK11889 318 EARVDYILIDTA 329 (436)
T ss_pred ccCCCEEEEeCc
Confidence 124677766653
No 377
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=40.14 E-value=2e+02 Score=23.36 Aligned_cols=48 Identities=21% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCCEEEEEEecccCCC--CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCC
Q 016053 268 NEDLLFAIINSVSRGK--GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDM 318 (396)
Q Consensus 268 ~~~~~il~vG~l~~~K--g~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~ 318 (396)
..+.+++++|..+-.. ..+.+.+-++.+.+.+++ ..|+.++++++.-+
T Consensus 51 ~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~---~~p~~~vi~~~~~p 100 (174)
T cd01841 51 NPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIRE---EFPNTKIYLLSVLP 100 (174)
T ss_pred CCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHH---HCCCCEEEEEeeCC
Confidence 3467888888876544 477888888888877765 34788888888543
No 378
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.02 E-value=66 Score=31.02 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=31.0
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCC
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKP 115 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~ 115 (396)
.+|++++.....||.... .+++|...||.++++++..+
T Consensus 267 P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk~s 304 (453)
T KOG2585|consen 267 PLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPKRS 304 (453)
T ss_pred ceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeecCc
Confidence 479999987777775544 89999999999999997654
No 379
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=39.89 E-value=97 Score=28.20 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=22.4
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|||+++.. | ..=..++..|.+.|++|+++...
T Consensus 1 m~I~IiG~-----G--~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA-----G--AIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC-----C--HHHHHHHHHHHhCCCeEEEEECC
Confidence 36777762 2 34456677788889999999853
No 380
>PRK05993 short chain dehydrogenase; Provisional
Probab=39.83 E-value=51 Score=29.65 Aligned_cols=33 Identities=18% Similarity=-0.000 Sum_probs=22.2
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
++..+|+ ||..-.=..+++.|.++|++|.++..
T Consensus 4 ~k~vlIt-----GasggiG~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 4 KRSILIT-----GCSSGIGAYCARALQSDGWRVFATCR 36 (277)
T ss_pred CCEEEEe-----CCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 3445555 33334556778888999999988764
No 381
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=39.64 E-value=1.7e+02 Score=22.34 Aligned_cols=67 Identities=12% Similarity=-0.054 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCEEEEEec-cCCCCchhhhhhhhhhhhhcceEEEEcCch-------------hhhhhccCCcEEEEcC
Q 016053 93 LMELAFLLRGVGTKVNWITI-QKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------------ETINTALKADLIVLNT 158 (396)
Q Consensus 93 ~~~l~~~L~~~G~~V~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~DiV~~~~ 158 (396)
..+-...|++.|++..|... ++.....+....+.......|+.+++++.. ..+....+|=++||.+
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~s 95 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRS 95 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SC
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 33445578999999887763 222222333333555677789888776543 1233346677778877
Q ss_pred c
Q 016053 159 A 159 (396)
Q Consensus 159 ~ 159 (396)
.
T Consensus 96 G 96 (110)
T PF04273_consen 96 G 96 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 382
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=39.56 E-value=92 Score=23.50 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=28.0
Q ss_pred cEEEEEeccCCCCCh-HHHHHHHHHHHHhCC---CEEEEEecc
Q 016053 75 KLVLLVSHELSLSGG-PLLLMELAFLLRGVG---TKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G---~~V~vi~~~ 113 (396)
|+|+++....+.+.. ......++......| ++|.|+...
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 578888765554444 588888888889999 999998843
No 383
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=39.53 E-value=2.1e+02 Score=27.09 Aligned_cols=84 Identities=13% Similarity=0.012 Sum_probs=46.8
Q ss_pred ccEEEEEecc-CCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 74 SKLVLLVSHE-LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 74 ~~kIl~v~~~-~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
..||+++... ...|-...+...++..+...|.+|+++++..............+.....|..+........ ...+.|
T Consensus 170 g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~e--a~~~aD 247 (357)
T TIGR03316 170 GKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDE--AFKDAD 247 (357)
T ss_pred CCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHH--HhCCCC
Confidence 3578877533 2333334677788888999999999999764322222211112223344544432222221 225789
Q ss_pred EEEEcCc
Q 016053 153 LIVLNTA 159 (396)
Q Consensus 153 iV~~~~~ 159 (396)
+|+....
T Consensus 248 vvyt~~w 254 (357)
T TIGR03316 248 IVYPKSW 254 (357)
T ss_pred EEEECCe
Confidence 9988753
No 384
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.45 E-value=1.7e+02 Score=29.03 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=48.9
Q ss_pred ccccEEEEEecc----------CCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc
Q 016053 72 MKSKLVLLVSHE----------LSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG 141 (396)
Q Consensus 72 m~~~kIl~v~~~----------~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (396)
++.+|||+.... ...-...+.=+.|++++..+|.+|++++.... +. ...++++++...
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~---------~~---~p~~v~~i~V~t 321 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD---------LA---DPQGVKVIHVES 321 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC---------CC---CCCCceEEEecC
Confidence 566789877643 11122238999999999999999999984321 11 123566666655
Q ss_pred hhhhh----hccCCcEEEEcCchhh
Q 016053 142 QETIN----TALKADLIVLNTAVAG 162 (396)
Q Consensus 142 ~~~~~----~~~~~DiV~~~~~~~~ 162 (396)
...+. ...++|+++.....+.
T Consensus 322 a~eM~~av~~~~~~Di~I~aAAVaD 346 (475)
T PRK13982 322 ARQMLAAVEAALPADIAIFAAAVAD 346 (475)
T ss_pred HHHHHHHHHhhCCCCEEEEeccccc
Confidence 44332 3345788876654443
No 385
>PRK13556 azoreductase; Provisional
Probab=39.44 E-value=69 Score=27.53 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=26.2
Q ss_pred cEEEEEeccCCC--CChH-HHHHHHHHHHHhC--CCEEEEEe
Q 016053 75 KLVLLVSHELSL--SGGP-LLLMELAFLLRGV--GTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~--gG~~-~~~~~l~~~L~~~--G~~V~vi~ 111 (396)
||||+|...... ++.. .....+++.+++. |++|.++-
T Consensus 2 ~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~D 43 (208)
T PRK13556 2 SKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELD 43 (208)
T ss_pred CeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 589998865543 4444 5666677787775 89999887
No 386
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=39.35 E-value=36 Score=29.44 Aligned_cols=33 Identities=24% Similarity=0.069 Sum_probs=26.7
Q ss_pred EeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 80 VSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 80 v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
+...++.+|-..+..+|++.|++.+|+|..++.
T Consensus 5 IlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 5 ILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 333455567779999999999999999998874
No 387
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=39.24 E-value=64 Score=30.99 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=33.0
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
-++++.+....|+.+.++..++..++++||+|.|+-.++
T Consensus 126 P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 126 PIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred cEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 466777777777778999999999999999999998654
No 388
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.21 E-value=2.1e+02 Score=28.21 Aligned_cols=87 Identities=16% Similarity=0.072 Sum_probs=46.7
Q ss_pred cccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccC
Q 016053 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALK 150 (396)
Q Consensus 71 ~m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (396)
+..+++|+++.- ||..+ .+++.|.+.|++|++.- .... . ..+.....|+.++.-..... ...+
T Consensus 12 ~~~~~~v~v~G~----G~sG~---a~a~~L~~~G~~V~~~D-~~~~---~----~~~~l~~~gi~~~~~~~~~~--~~~~ 74 (473)
T PRK00141 12 QELSGRVLVAGA----GVSGR---GIAAMLSELGCDVVVAD-DNET---A----RHKLIEVTGVADISTAEASD--QLDS 74 (473)
T ss_pred cccCCeEEEEcc----CHHHH---HHHHHHHHCCCEEEEEC-CChH---H----HHHHHHhcCcEEEeCCCchh--HhcC
Confidence 334457887762 44333 77888999999877754 2211 0 11112334777654321111 1236
Q ss_pred CcEEEEcC--chhhHHHHHHHhcCCC
Q 016053 151 ADLIVLNT--AVAGKWLDAVLKEDVP 174 (396)
Q Consensus 151 ~DiV~~~~--~~~~~~~~~~~~~~~~ 174 (396)
+|+|+... +.....+..+.+.+++
T Consensus 75 ~d~vV~Spgi~~~~p~~~~a~~~gi~ 100 (473)
T PRK00141 75 FSLVVTSPGWRPDSPLLVDAQSQGLE 100 (473)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHCCCc
Confidence 78887765 2334455566666654
No 389
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=39.08 E-value=74 Score=28.61 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=30.8
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
.|++.+++.....|-.....+|+.+|++.|.+|.++-.
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 46777776666667779999999999999999998853
No 390
>PLN00016 RNA-binding protein; Provisional
Probab=39.08 E-value=39 Score=32.14 Aligned_cols=37 Identities=30% Similarity=0.284 Sum_probs=26.7
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
++||+++... ||....=..+++.|.++||+|++++..
T Consensus 53 ~~VLVt~~~~--GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNS--GGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ceEEEEeccC--CCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 5798885322 333356677888899999999999844
No 391
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=39.03 E-value=2.5e+02 Score=24.16 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=63.3
Q ss_pred HHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCC
Q 016053 258 EHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKI 337 (396)
Q Consensus 258 ~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l 337 (396)
+.+++++.......+++++|. -..|=|-++ ++++|.. .+-++.++..|+.... ..+..+...+.++.
T Consensus 38 ~~i~~~~~~~~~~~v~vlcG~--GnNGGDG~V-aAR~L~~-------~G~~V~v~~~~~~~~~---~~~~a~~~~~~l~~ 104 (203)
T COG0062 38 RAILREYPLGRARRVLVLCGP--GNNGGDGLV-AARHLKA-------AGYAVTVLLLGDPKKL---KTEAARANLKSLGI 104 (203)
T ss_pred HHHHHHcCcccCCEEEEEECC--CCccHHHHH-HHHHHHh-------CCCceEEEEeCCCCCc---cHHHHHHHHHhhcC
Confidence 456677664334556777776 355666666 5555543 3357888888865311 12333333333333
Q ss_pred CCcEEEecCcCCHHHHHHHcCEEEecCCC------CCCCccHHHHHHH-hcCCCEEEcCCC
Q 016053 338 QDRVHFVNKTLTVAPYLAAIDVLVQNSQA------WGECFGRITIEAM-AFQLPVLVLSEL 391 (396)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS~~------~~E~fg~~~lEAm-a~G~PVI~t~~g 391 (396)
...+..... ......+|++|-.-.. -.|.+.. ++|.+ +.|+|||+-|++
T Consensus 105 ~~~v~~~~~----~~~~~~~dvIVDalfG~G~~g~lrep~a~-~Ie~iN~~~~pivAVDiP 160 (203)
T COG0062 105 GGVVKIKEL----EDEPESADVIVDALFGTGLSGPLREPFAS-LIEAINASGKPIVAVDIP 160 (203)
T ss_pred Ccceeeccc----ccccccCCEEEEeceecCCCCCCccHHHH-HHHHHHhcCCceEEEeCC
Confidence 222222221 1167788998854330 0233333 44444 599999999886
No 392
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.94 E-value=69 Score=24.92 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=51.3
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe-ccCCCCchhhhhhhhhhhhhcceEEEEcCch------------
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT-IQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ------------ 142 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 142 (396)
.|.-|+..++.+| .....=...++++|++-.+.. +++..+..+............|+.+.+.+..
T Consensus 2 ~i~~I~d~lsVsg--Qi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f 79 (130)
T COG3453 2 DIRRINDRLSVSG--QISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAF 79 (130)
T ss_pred CceecccceeecC--CCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHH
Confidence 4666676666665 233334556788999877766 4444445555555666667777766444321
Q ss_pred -hhhhhccCCcEEEEcCc
Q 016053 143 -ETINTALKADLIVLNTA 159 (396)
Q Consensus 143 -~~~~~~~~~DiV~~~~~ 159 (396)
+.+...+.|=+.||-+.
T Consensus 80 ~~Al~eaegPVlayCrsG 97 (130)
T COG3453 80 QRALDEAEGPVLAYCRSG 97 (130)
T ss_pred HHHHHHhCCCEEeeecCC
Confidence 34556688888898874
No 393
>PRK08462 biotin carboxylase; Validated
Probab=38.86 E-value=1.3e+02 Score=29.28 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=25.4
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
++|||++. +| .....+++++++.|++|.+++..
T Consensus 4 ~k~ili~~-----~g--~~~~~~~~~~~~~G~~~v~~~~~ 36 (445)
T PRK08462 4 IKRILIAN-----RG--EIALRAIRTIQEMGKEAIAIYST 36 (445)
T ss_pred CCEEEEEC-----Cc--HHHHHHHHHHHHcCCCEEEEech
Confidence 46899887 33 34668899999999999988743
No 394
>PLN03007 UDP-glucosyltransferase family protein
Probab=38.73 E-value=62 Score=32.08 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=30.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.+|+++. ...-|.-.-+.+|++.|..+|++|++++..
T Consensus 6 ~hVvlvp--~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~ 42 (482)
T PLN03007 6 LHILFFP--FMAHGHMIPTLDMAKLFSSRGAKSTILTTP 42 (482)
T ss_pred cEEEEEC--CCccccHHHHHHHHHHHHhCCCEEEEEECC
Confidence 4777776 334577789999999999999999999954
No 395
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=38.71 E-value=60 Score=26.26 Aligned_cols=37 Identities=16% Similarity=0.011 Sum_probs=28.2
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|+||+++... ..|..+.....+++.|...|+++.+..
T Consensus 1 M~ki~Ivy~S-~tGnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 1 MMKILIVYGS-RTGNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CCeEEEEEEc-CCCcHHHHHHHHHHHhccCCceEEEee
Confidence 3578877742 237778999999999999999995554
No 396
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=38.63 E-value=1e+02 Score=29.88 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=47.9
Q ss_pred CCEEEEEEec-CCCccchHHHHHHHHHHhcCCCCcEEEecCc-CCHHHHHHHcCEEEecCC-----CCCCCcc---HHHH
Q 016053 307 PSVHAVIIGS-DMNAQTKFESELRNYVMQKKIQDRVHFVNKT-LTVAPYLAAIDVLVQNSQ-----AWGECFG---RITI 376 (396)
Q Consensus 307 ~~~~l~ivG~-g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~-~~~~~~~~~aDv~v~pS~-----~~~E~fg---~~~l 376 (396)
-+.-=+|+|. |..+..+-.++++++++..|....+..+|.. ..--+.|...|+||+-+- .|...|. ++..
T Consensus 266 A~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLAnF~eIDvfV~iaCp~lsid~s~~F~kPiltPf 345 (453)
T KOG2648|consen 266 ARTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLANFPEIDVFVQIACPRLSIDWSKEFYKPLLTPF 345 (453)
T ss_pred CCeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhcCCccccEEEEEeCcccchhhhhhhccccccHH
Confidence 3444556664 3344455677888888888888888888875 233345666999997543 2444443 3345
Q ss_pred HHHhcCCC
Q 016053 377 EAMAFQLP 384 (396)
Q Consensus 377 EAma~G~P 384 (396)
||-.+.-|
T Consensus 346 Ea~~Al~~ 353 (453)
T KOG2648|consen 346 EAEVALNP 353 (453)
T ss_pred HHHHhcCc
Confidence 66544444
No 397
>PRK06483 dihydromonapterin reductase; Provisional
Probab=38.59 E-value=1.6e+02 Score=25.35 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 87 SGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
||..-.=..+++.|.++|++|.++...
T Consensus 9 Gas~gIG~~ia~~l~~~G~~V~~~~r~ 35 (236)
T PRK06483 9 GAGQRIGLALAWHLLAQGQPVIVSYRT 35 (236)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence 344456677888899999999887643
No 398
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=38.58 E-value=1.9e+02 Score=26.74 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=43.7
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+..+|+++... .+.+..++..+...|.+|.++++..-...........+.....|..+........ ...+.|
T Consensus 147 ~g~~v~~vGd~------~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~--a~~~aD 218 (304)
T TIGR00658 147 KGVKVVYVGDG------NNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVE--AVKGAD 218 (304)
T ss_pred CCcEEEEEeCC------CchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHH--HhCCCC
Confidence 44688888642 2688999999999999999999764332222211121212333433322222211 224788
Q ss_pred EEEEc
Q 016053 153 LIVLN 157 (396)
Q Consensus 153 iV~~~ 157 (396)
+|+.-
T Consensus 219 vvy~~ 223 (304)
T TIGR00658 219 VIYTD 223 (304)
T ss_pred EEEEc
Confidence 88874
No 399
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=38.56 E-value=2.2e+02 Score=27.21 Aligned_cols=37 Identities=19% Similarity=-0.004 Sum_probs=26.1
Q ss_pred cccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 71 FMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 71 ~m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
+.+.++|+++. |....=..+++.|.++|++|.+++..
T Consensus 57 ~~~~~kVLVtG------atG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 57 EPKDVTVLVVG------ATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCCCEEEEEC------CCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 34456777653 44456677888888899999988743
No 400
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=38.56 E-value=2.4e+02 Score=25.29 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=28.7
Q ss_pred CCHHHHHH--HcCEEEecCCCCCCCccHHHHHHHh--cCCCEEE
Q 016053 348 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMA--FQLPVLV 387 (396)
Q Consensus 348 ~~~~~~~~--~aDv~v~pS~~~~E~fg~~~lEAma--~G~PVI~ 387 (396)
.++.+.+. ..|+++=.|.- .-.|.--++++|+ +..|+|-
T Consensus 96 ~~L~eav~~~kptvlIG~S~~-~g~ft~evv~~Ma~~~~~PIIF 138 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRV-GGAFTPEVIRAXAEINERPVIF 138 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCC-CCCCCHHHHHHHhhcCCCCEEE
Confidence 46777888 88999877662 3457778899998 5677764
No 401
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=38.53 E-value=2.2e+02 Score=23.20 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=46.9
Q ss_pred CEEEEEEecccCCC----CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc--c--chHHHHHHHHHHhcCCCCcE
Q 016053 270 DLLFAIINSVSRGK----GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA--Q--TKFESELRNYVMQKKIQDRV 341 (396)
Q Consensus 270 ~~~il~vG~l~~~K----g~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~--~--~~~~~~l~~~~~~~~l~~~V 341 (396)
+.+++.+|..+..+ ..+.+.+.+..+.+++++ ++|+.+++++..-... . ++..+.+.+.+++.+- .+|
T Consensus 57 d~vii~~G~ND~~~~~~~~~~~~~~~~~~li~~i~~---~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 132 (169)
T cd01831 57 DLVVINLGTNDFSTGNNPPGEDFTNAYVEFIEELRK---RYPDAPIVLMLGPMLFGPYGTEEEIKRVAEAFKDQKS-KKV 132 (169)
T ss_pred CEEEEECCcCCCCCCCCCCHHHHHHHHHHHHHHHHH---HCCCCeEEEEecCccccccccHHHHHHHHHHHHhcCC-ceE
Confidence 46777788776543 367888888888777776 4588887776532211 1 2345566776766543 468
Q ss_pred EEecCc
Q 016053 342 HFVNKT 347 (396)
Q Consensus 342 ~~~g~~ 347 (396)
.|+...
T Consensus 133 ~~id~~ 138 (169)
T cd01831 133 HYFDTP 138 (169)
T ss_pred EEEecc
Confidence 887653
No 402
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=38.44 E-value=52 Score=27.88 Aligned_cols=100 Identities=15% Similarity=0.271 Sum_probs=42.9
Q ss_pred CEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecC--c
Q 016053 270 DLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNK--T 347 (396)
Q Consensus 270 ~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--~ 347 (396)
..+-+.+.++....-...+++. +.+ ++|+.++++-...+.+ .+..++...+ ...+.+++. .
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~-------l~~---~~p~~~illT~~T~tg----~~~~~~~~~~---~v~~~~~P~D~~ 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKR-------LRK---QRPDLRILLTTTTPTG----REMARKLLPD---RVDVQYLPLDFP 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHH-------HTT------TS-EEEEES-CCH----HHHHHGG-GG---G-SEEE---SSH
T ss_pred CcEEEEECCHHHHHHHHHHHHH-------HHH---hCCCCeEEEEecCCch----HHHHHHhCCC---CeEEEEeCccCH
Confidence 4556666665333333333333 322 3489999888875422 2333333221 123444332 1
Q ss_pred CCHHHHHHHc--CEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 348 LTVAPYLAAI--DVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 348 ~~~~~~~~~a--Dv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
..+..+++.- |++|+-- .|-+|+-+.+|-..|+|++.-|
T Consensus 85 ~~~~rfl~~~~P~~~i~~E---tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 85 WAVRRFLDHWRPDLLIWVE---TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp HHHHHHHHHH--SEEEEES-------HHHHHH-----S-EEEEE
T ss_pred HHHHHHHHHhCCCEEEEEc---cccCHHHHHHHhhcCCCEEEEe
Confidence 3366677765 7777643 6899999999999999998754
No 403
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=38.43 E-value=71 Score=29.12 Aligned_cols=66 Identities=20% Similarity=0.082 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEecCcCCHHHHHH----HcCEEEecCCC-CCCCccHHHHHHHhcCCCEEEcC
Q 016053 324 FESELRNYVMQKKIQDRVHFVNKTLTVAPYLA----AIDVLVQNSQA-WGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 324 ~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~----~aDv~v~pS~~-~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
..+.+++.++++|++-....+...+++...+. ..|+++++... -.+.+...+..+...++||++++
T Consensus 148 ~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 148 QIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp HHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESS
T ss_pred HHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECC
Confidence 34455555555554422222223333333333 44666555331 02233344557778899999875
No 404
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=38.25 E-value=2.5e+02 Score=23.83 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=19.5
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEE
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVN 108 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~ 108 (396)
.++++. ..||...-+.+|.++|++. +++.
T Consensus 40 ~~lVvl---GSGGHT~EMlrLl~~l~~~-y~~r 68 (211)
T KOG3339|consen 40 STLVVL---GSGGHTGEMLRLLEALQDL-YSPR 68 (211)
T ss_pred eEEEEE---cCCCcHHHHHHHHHHHHhh-cCce
Confidence 466554 3467677888888888765 5544
No 405
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=38.07 E-value=1.1e+02 Score=30.14 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=36.7
Q ss_pred CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcC-CCEEEcCC
Q 016053 348 LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQ-LPVLVLSE 390 (396)
Q Consensus 348 ~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G-~PVI~t~~ 390 (396)
....+.+..|..++.|.- .+...-.+.||+..| +|||-++.
T Consensus 335 ~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~ 376 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDG 376 (464)
T ss_pred chHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCC
Confidence 578899999999999999 888888999999999 68888875
No 406
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=37.78 E-value=2.5e+02 Score=27.58 Aligned_cols=89 Identities=19% Similarity=0.235 Sum_probs=50.8
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcE
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (396)
.|||+++. +..+| ...++.|.+.|++|++.-.+... ... ........++.+..-.... ....++|+
T Consensus 7 ~~kv~V~G--LG~sG-----~a~a~~L~~~G~~v~v~D~~~~~-~~~----~~~~~~~~~i~~~~g~~~~--~~~~~~d~ 72 (448)
T COG0771 7 GKKVLVLG--LGKSG-----LAAARFLLKLGAEVTVSDDRPAP-EGL----AAQPLLLEGIEVELGSHDD--EDLAEFDL 72 (448)
T ss_pred CCEEEEEe--ccccc-----HHHHHHHHHCCCeEEEEcCCCCc-cch----hhhhhhccCceeecCccch--hccccCCE
Confidence 56899887 33333 66788899999999998644321 111 1112223344443322222 33467899
Q ss_pred EEEcC--chhhHHHHHHHhcCCCcc
Q 016053 154 IVLNT--AVAGKWLDAVLKEDVPRV 176 (396)
Q Consensus 154 V~~~~--~~~~~~~~~~~~~~~~~~ 176 (396)
|+.+- +....++..+.+.+++.+
T Consensus 73 vV~SPGi~~~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 73 VVKSPGIPPTHPLVEAAKAAGIEII 97 (448)
T ss_pred EEECCCCCCCCHHHHHHHHcCCcEE
Confidence 98776 333456666667666643
No 407
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=37.75 E-value=2e+02 Score=28.27 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred hHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhc
Q 016053 256 LREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQK 335 (396)
Q Consensus 256 ~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~ 335 (396)
.+.++++-..+++| +|+.+|. ...-+-+.+++-++.+.+ ..-+..++++|+-. ..+++++...+.
T Consensus 109 ~~~~l~~I~~~~PD--IILLaGG-tDGG~~e~~l~NA~~La~-------~~~~~pIIyAGN~~-----a~~~V~~il~~~ 173 (463)
T TIGR01319 109 NNKDIEAIEESNLD--IILFAGG-TDGGEEECGIHNAKMLAE-------HGLDCAIIVAGNKD-----IQDEVQEIFDHA 173 (463)
T ss_pred CHHHHHHHhhcCCC--EEEEeCC-cCCCchHHHHHHHHHHHh-------cCCCCcEEEeCCHH-----HHHHHHHHHhcC
Q ss_pred CCC----CcE------------------EEecCc---CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCC-------
Q 016053 336 KIQ----DRV------------------HFVNKT---LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL------- 383 (396)
Q Consensus 336 ~l~----~~V------------------~~~g~~---~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~------- 383 (396)
++. +|| .|.-.. .-+..+...++-.++|.- +-=+...|.++-|.
T Consensus 174 ~~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP----~AV~~a~~~la~~~~~~~g~g 249 (463)
T TIGR01319 174 DIFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTP----AAVFEAAKAIAEGTDKDDGIG 249 (463)
T ss_pred CceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCH----HHHHHHHHHHHhccccccCcC
Q ss_pred CEEEcCCCCCCC
Q 016053 384 PVLVLSELHPSI 395 (396)
Q Consensus 384 PVI~t~~gG~~~ 395 (396)
+++.-|+||+.+
T Consensus 250 ~ll~VDIGGATT 261 (463)
T TIGR01319 250 DFILIDIGGATT 261 (463)
T ss_pred CEEEEEcCcccc
No 408
>PRK05569 flavodoxin; Provisional
Probab=37.30 E-value=83 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.058 Sum_probs=26.6
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
++|+++... ..|..+.....+++.+.+.|++|.+..
T Consensus 2 ~ki~iiY~S-~tGnT~~iA~~i~~~~~~~g~~v~~~~ 37 (141)
T PRK05569 2 KKVSIIYWS-CGGNVEVLANTIADGAKEAGAEVTIKH 37 (141)
T ss_pred CeEEEEEEC-CCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 366666643 245556888999999999999988775
No 409
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=37.28 E-value=1.3e+02 Score=24.80 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchh--hhh-hccCCcEEEEcCc
Q 016053 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQE--TIN-TALKADLIVLNTA 159 (396)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~DiV~~~~~ 159 (396)
||....=..+++.|.++||+|++++.+... ..+ ..+++++...... .+. ...+.|.|++..+
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~--------~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPSK--------AED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGGG--------HHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCchh--------ccc---ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 444577788999999999999999955331 222 4567776654332 122 2357888876653
No 410
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.21 E-value=1.8e+02 Score=24.15 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=32.3
Q ss_pred CCEEEEEEecccC--CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEec
Q 016053 269 EDLLFAIINSVSR--GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGS 316 (396)
Q Consensus 269 ~~~~il~vG~l~~--~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~ 316 (396)
-+.+++.+|..+- ....+.+.+.+.++.+.+++ ++++.++++++.
T Consensus 68 pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~---~~~~~~iiv~~~ 114 (191)
T cd01836 68 FDVAVISIGVNDVTHLTSIARWRKQLAELVDALRA---KFPGARVVVTAV 114 (191)
T ss_pred CCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHh---hCCCCEEEEECC
Confidence 3567777777553 45678888888888877765 348899988874
No 411
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=37.19 E-value=1.6e+02 Score=25.53 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=46.2
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKAD 152 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 152 (396)
+.++|+++. || .....=++.|.+.|-+|+|+++.-.. .+.......++..+. ..... .....++
T Consensus 11 ~~k~VlvvG-----gG--~va~rKa~~ll~~ga~v~Vvs~~~~~-------el~~~~~~~~i~~~~-~~~~~-~~~~~~~ 74 (210)
T COG1648 11 EGKKVLVVG-----GG--SVALRKARLLLKAGADVTVVSPEFEP-------ELKALIEEGKIKWIE-REFDA-EDLDDAF 74 (210)
T ss_pred CCCEEEEEC-----CC--HHHHHHHHHHHhcCCEEEEEcCCccH-------HHHHHHHhcCcchhh-cccCh-hhhcCce
Confidence 445777765 33 45555677888899999999966411 133333444444433 21111 1123388
Q ss_pred EEEEcCc---hhhHHHHHHHhcCC
Q 016053 153 LIVLNTA---VAGKWLDAVLKEDV 173 (396)
Q Consensus 153 iV~~~~~---~~~~~~~~~~~~~~ 173 (396)
+|++.+. ........+...++
T Consensus 75 lviaAt~d~~ln~~i~~~a~~~~i 98 (210)
T COG1648 75 LVIAATDDEELNERIAKAARERRI 98 (210)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhCC
Confidence 8887763 23334444555554
No 412
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=37.17 E-value=1.8e+02 Score=28.76 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=24.6
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
++|||++. +| .....+++++++.|+++.+++.
T Consensus 5 ~~~vLi~~-----~g--eia~~ii~aa~~lG~~~v~~~s 36 (467)
T PRK12833 5 IRKVLVAN-----RG--EIAVRIIRAARELGMRTVAACS 36 (467)
T ss_pred CcEEEEEC-----Cc--HHHHHHHHHHHHcCCeEEEEEC
Confidence 35888876 33 4567888999999999988764
No 413
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=37.15 E-value=1.4e+02 Score=27.54 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=43.7
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCC--c--hhhhhhhhhhhhhcceEEEEcCchh-----hh
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSE--E--DEVIYSLEHKMWDRGVQVISAKGQE-----TI 145 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 145 (396)
|||+|... +.+.....++|.+.||+|.-+....+.. . .....+........|+.++.....+ ..
T Consensus 2 mkivF~GT-------p~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~ 74 (307)
T COG0223 2 MRIVFFGT-------PEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEE 74 (307)
T ss_pred cEEEEEcC-------chhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHH
Confidence 57887753 2344444666777889999666332221 1 1222334455566788776543332 23
Q ss_pred hhccCCcEEEEcC
Q 016053 146 NTALKADLIVLNT 158 (396)
Q Consensus 146 ~~~~~~DiV~~~~ 158 (396)
....++|++++-.
T Consensus 75 l~~l~~D~ivvva 87 (307)
T COG0223 75 LAALDPDLIVVVA 87 (307)
T ss_pred HhccCCCEEEEEe
Confidence 3456899998754
No 414
>CHL00175 minD septum-site determining protein; Validated
Probab=37.09 E-value=81 Score=28.50 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=27.2
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
+|+.|.+.-...|-.....+|+.+|.+.|++|.++-
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD 51 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALID 51 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 566666444334555889999999999999998885
No 415
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=37.06 E-value=35 Score=25.39 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHH
Q 016053 16 RWILALLIMLSIS 28 (396)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (396)
+.+++++++|++.
T Consensus 4 K~~llL~l~LA~l 16 (95)
T PF07172_consen 4 KAFLLLGLLLAAL 16 (95)
T ss_pred hHHHHHHHHHHHH
Confidence 3345555554443
No 416
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.00 E-value=1.7e+02 Score=25.65 Aligned_cols=22 Identities=18% Similarity=-0.023 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEec
Q 016053 91 LLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
-.=..+++.|.+.|++|.++..
T Consensus 18 gIG~~~a~~l~~~G~~v~~~~~ 39 (255)
T PRK06463 18 GIGRAIAEAFLREGAKVAVLYN 39 (255)
T ss_pred hHHHHHHHHHHHCCCEEEEEeC
Confidence 3556788889999999987753
No 417
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.78 E-value=25 Score=27.77 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=5.8
Q ss_pred hHHHHHHHHHH
Q 016053 16 RWILALLIMLS 26 (396)
Q Consensus 16 ~~~~~~~~~~~ 26 (396)
||.+++++++.
T Consensus 1 RW~l~~iii~~ 11 (130)
T PF12273_consen 1 RWVLFAIIIVA 11 (130)
T ss_pred CeeeHHHHHHH
Confidence 56665554443
No 418
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=36.68 E-value=80 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.066 Sum_probs=27.4
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
+++.+... +..|-.+.+..++..|+++|+.|.++-
T Consensus 2 ~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 55555543 445666888999999999999999996
No 419
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=36.51 E-value=4.3e+02 Score=26.57 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=58.5
Q ss_pred EecCCccchhhhhhhhHHHHHhHHHHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEE
Q 016053 235 VHLGNSKELMEVAEDNVAKRVLREHVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVII 314 (396)
Q Consensus 235 I~ngid~~~~~~~~~~~~~~~~~~~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~iv 314 (396)
|-|+-|.+...|. +.-.+---+++.+|.+-+...|+++|-+...+=..-++.+++.+ ..+++.++
T Consensus 143 VINAgdg~~~HPT----QaLaDl~TI~E~~G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~-----------g~~~v~l~ 207 (525)
T PRK13376 143 FINAGDGKHEHPT----QELLDEFTFLEQNNFDNSFIHIALVGDLLHGRTVHSKVNGLKIF-----------KNVKVDLI 207 (525)
T ss_pred EEECCCCCCCCch----HHHHHHHHHHHHcCCCcCCCEEEEECCCCCCcHHHHHHHHHHhc-----------CCcEEEEE
Confidence 4577665554443 11223345677777434568899999874444455666665543 34889999
Q ss_pred ecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCE
Q 016053 315 GSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDV 359 (396)
Q Consensus 315 G~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv 359 (396)
++..-. ..+++.+.+++.|. .+.. .+++.+.+..||+
T Consensus 208 ~P~~~~---~p~~~~~~a~~~G~--~v~i---~~d~~eav~~AD~ 244 (525)
T PRK13376 208 APEELA---MPEHYVEKMKKNGF--EVRI---FSSIEEYLSQKDV 244 (525)
T ss_pred CCcccc---CCHHHHHHHHHcCC--eEEE---EcCHHHHhccCCc
Confidence 974310 12334444444332 2321 2678899999994
No 420
>PRK01355 azoreductase; Reviewed
Probab=36.42 E-value=93 Score=26.54 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=26.7
Q ss_pred cEEEEEeccCC--CCChH-HHHHHHHHHHHhC--CCEEEEEe
Q 016053 75 KLVLLVSHELS--LSGGP-LLLMELAFLLRGV--GTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~--~gG~~-~~~~~l~~~L~~~--G~~V~vi~ 111 (396)
||||+|..... .+|.. .....+++.+++. |++|.++-
T Consensus 2 ~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~d 43 (199)
T PRK01355 2 SKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILD 43 (199)
T ss_pred CeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 58888886654 34433 6777788888874 58898886
No 421
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=36.22 E-value=1.6e+02 Score=26.68 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=27.6
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
++|..|.+.-..-|-.++..+|+.+|+..|.+|-++-.+
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~D 85 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDAD 85 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeec
Confidence 455555543333344599999999999999999988743
No 422
>PRK10037 cell division protein; Provisional
Probab=36.20 E-value=71 Score=28.32 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCChH--HHHHHHHHHHHhCCCEEEEEe
Q 016053 86 LSGGP--LLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 86 ~gG~~--~~~~~l~~~L~~~G~~V~vi~ 111 (396)
-||.. ....+|+.+|+++|++|.++=
T Consensus 10 KGGvGKTT~a~nLA~~La~~G~rVLlID 37 (250)
T PRK10037 10 RGGVGTTSITAALAWSLQMLGENVLVID 37 (250)
T ss_pred CCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 35554 678999999999999999995
No 423
>PRK07308 flavodoxin; Validated
Probab=36.08 E-value=75 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 85 SLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 85 ~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
..|..+.....+++.|.+.|+++.+.-
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~ 37 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDE 37 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEe
Confidence 446667999999999999999988764
No 424
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.02 E-value=4.2e+02 Score=25.74 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEe-----------------
Q 016053 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFV----------------- 344 (396)
Q Consensus 282 ~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~----------------- 344 (396)
..|.+..++++-+. +.....+..+-++.|+|..... ..+.++++++.++.|++.+..+-
T Consensus 132 ~~G~~~a~~al~~~---~~~~~~~~~~~~VNlig~~~~~-~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~ 207 (428)
T cd01965 132 ETGYDNAVKAIIEQ---LAKPSEVKKNGKVNLLPGFPLT-PGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLT 207 (428)
T ss_pred HHHHHHHHHHHHHH---HhcccCCCCCCeEEEECCCCCC-ccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccC
Confidence 46777777666542 2111000134467777754322 22578999999999998776663
Q ss_pred -cCcCCHHHHH--HHcCEEEecCCCCCCCccHHHHHHHh--cCCCEEEcC
Q 016053 345 -NKTLTVAPYL--AAIDVLVQNSQAWGECFGRITIEAMA--FQLPVLVLS 389 (396)
Q Consensus 345 -g~~~~~~~~~--~~aDv~v~pS~~~~E~fg~~~lEAma--~G~PVI~t~ 389 (396)
|. ..+.++- ..|.+-+..+ ..+|..+.|.|. +|+|-+..+
T Consensus 208 ~gg-~~~e~i~~~~~A~lniv~~----~~~~~~~a~~L~e~~GiP~~~~~ 252 (428)
T cd01965 208 KGG-TTLEEIRDAGNAKATIALG----EYSGRKAAKALEEKFGVPYILFP 252 (428)
T ss_pred CCC-CcHHHHHHhccCcEEEEEC----hhhhHHHHHHHHHHHCCCeeecC
Confidence 21 2334443 3444444322 235667777765 899998765
No 425
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=36.02 E-value=1.4e+02 Score=21.70 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHH
Q 016053 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVA 351 (396)
Q Consensus 282 ~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~ 351 (396)
..|....++|+++ ...+++++..+.+ +.....+..++++.+++ +.|++...++-
T Consensus 15 vvG~kqt~Kai~k------------g~~~~v~iA~Da~--~~vv~~l~~lceek~Ip--~v~V~s~~~LG 68 (84)
T PRK13600 15 VVGLKETLKALKK------------DQVTSLIIAEDVE--VYLMTRVLSQINQKNIP--VSFFKSKHALG 68 (84)
T ss_pred eeeHHHHHHHHhc------------CCceEEEEeCCCC--HHHHHHHHHHHHHcCCC--EEEECCHHHHH
Confidence 4577777777764 4566666655442 34677899999999987 77777654443
No 426
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=35.98 E-value=83 Score=26.42 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEecc
Q 016053 91 LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
....++++.|++.|++|.++..+
T Consensus 14 ~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 14 YKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEECh
Confidence 66679999999999999998854
No 427
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=35.86 E-value=2.2e+02 Score=26.53 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.8
Q ss_pred CCCCCh--HHHHHHHHHHHHhCCCEEEEEecc
Q 016053 84 LSLSGG--PLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 84 ~~~gG~--~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
...||. ...+..|++.|+++|++|.+++.+
T Consensus 57 i~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 57 ITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred eeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 333444 488999999999999999999843
No 428
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=35.83 E-value=2.6e+02 Score=26.47 Aligned_cols=91 Identities=20% Similarity=0.162 Sum_probs=48.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcEE
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLI 154 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV 154 (396)
+.+++++-..........+..++++|.+.|+++.+.+....... . +.. . ..++.+...-....+ ....|++
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~-~----~~~-~-~~~v~~~~~~p~~~l--l~~~~~~ 295 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPA-D----LGE-L-PPNVEVRQWVPQLEI--LKKADAF 295 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChh-H----hcc-C-CCCeEEeCCCCHHHH--HhhCCEE
Confidence 34555553332233334778899999999988887764332110 0 111 1 123444322222222 3468999
Q ss_pred EEcCchhhHHHHHHHhcCCCcc
Q 016053 155 VLNTAVAGKWLDAVLKEDVPRV 176 (396)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~ 176 (396)
++|...... ..+...++|.+
T Consensus 296 I~hgG~~t~--~Eal~~G~P~v 315 (392)
T TIGR01426 296 ITHGGMNST--MEALFNGVPMV 315 (392)
T ss_pred EECCCchHH--HHHHHhCCCEE
Confidence 999865433 44566677754
No 429
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=35.71 E-value=1.7e+02 Score=25.70 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=42.7
Q ss_pred EecccCCC--CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHH-hcCCCCcEEEecCcCCHHH
Q 016053 276 INSVSRGK--GQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM-QKKIQDRVHFVNKTLTVAP 352 (396)
Q Consensus 276 vG~l~~~K--g~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~-~~~l~~~V~~~g~~~~~~~ 352 (396)
+--++|.| ..+..++++.+ ...-.+++|+...-..+....+.+.++ +.+++ -+.|.|..+.+..
T Consensus 19 ~tliDP~k~~~~~ei~~~~~~------------~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lP-vilfP~~~~~is~ 85 (240)
T COG1646 19 LTLIDPDKTEEADEIAEAAAE------------AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLP-VILFPGSPSGISP 85 (240)
T ss_pred EEEeCcccccccHHHHHHHHH------------cCCCEEEECCcccccHHHHHHHHHHHHhhcCCC-EEEecCChhccCc
Confidence 33456666 34555555544 456678889654222233444444555 56665 5666665544443
Q ss_pred HHHHcCEEEecCC
Q 016053 353 YLAAIDVLVQNSQ 365 (396)
Q Consensus 353 ~~~~aDv~v~pS~ 365 (396)
.+|.+++||.
T Consensus 86 ---~aDavff~sv 95 (240)
T COG1646 86 ---YADAVFFPSV 95 (240)
T ss_pred ---cCCeEEEEEE
Confidence 8999888876
No 430
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=35.57 E-value=1.8e+02 Score=27.27 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=27.4
Q ss_pred EEEEeccCCCCChH--HHHHHHHHHHHhCCCEEEEEecc
Q 016053 77 VLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 77 Il~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|+.|.+ ...||.. -.+..|++.|+++|+.+-+++..
T Consensus 49 VI~VGN-ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 49 VICVGN-LTVGGTGKTPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred EEEEcc-EEECCCCcCHHHHHHHHHHHhcCCeeEEEecC
Confidence 444443 4455554 89999999999999999999943
No 431
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=35.57 E-value=1.3e+02 Score=26.16 Aligned_cols=23 Identities=17% Similarity=-0.064 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEecc
Q 016053 91 LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
-.=..+++.|.++|++|.+....
T Consensus 13 giG~~la~~l~~~g~~v~~~~~~ 35 (248)
T PRK06947 13 GIGRATAVLAAARGWSVGINYAR 35 (248)
T ss_pred cHHHHHHHHHHHCCCEEEEEeCC
Confidence 35566888888999998776533
No 432
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=35.31 E-value=1.2e+02 Score=29.93 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEec--C--c---------C
Q 016053 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVN--K--T---------L 348 (396)
Q Consensus 282 ~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g--~--~---------~ 348 (396)
.--...+.+|+..+++ -.-.|+|+|.|.--.. -+++++++++..|++ +...+ . . .
T Consensus 201 ~p~~s~i~~av~llk~---------AKrPLlvvGkgAa~~~-ae~~l~~~Ve~~glP--flptpMgKGll~d~hPl~v~~ 268 (571)
T KOG1185|consen 201 GPPPSQIQKAVQLLKS---------AKRPLLVVGKGAAYAP-AEDQLRKFVETTGLP--FLPTPMGKGLLPDNHPLNVSS 268 (571)
T ss_pred CCCHHHHHHHHHHHHh---------cCCcEEEEecccccCc-cHHHHHHHHHhcCCC--cccCcccccCCCCCCchhhhH
Confidence 4456777888877764 2334999999874333 568899999999987 22222 1 0 2
Q ss_pred CHHHHHHHcCEEEec
Q 016053 349 TVAPYLAAIDVLVQN 363 (396)
Q Consensus 349 ~~~~~~~~aDv~v~p 363 (396)
.-...++.||+.++-
T Consensus 269 aRS~ALk~ADvvll~ 283 (571)
T KOG1185|consen 269 ARSLALKKADVVLLA 283 (571)
T ss_pred HHHHHHhhCCEEEEe
Confidence 345678999998764
No 433
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=35.16 E-value=85 Score=25.09 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=30.3
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.|+|+++.-...+. +..+..++.|+++||+|.-+.+.
T Consensus 16 ~K~IAvVG~S~~P~---r~sy~V~kyL~~~GY~ViPVNP~ 52 (140)
T COG1832 16 AKTIAVVGASDKPD---RPSYRVAKYLQQKGYRVIPVNPK 52 (140)
T ss_pred CceEEEEecCCCCC---ccHHHHHHHHHHCCCEEEeeCcc
Confidence 46899998665554 78888999999999999988764
No 434
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=34.99 E-value=1.3e+02 Score=19.55 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=40.3
Q ss_pred EEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCCCEEEc
Q 016053 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQLPVLVL 388 (396)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t 388 (396)
..+.+.|..+ ....+.+++++.+.| ..+.- ++. ..++.+|.+.. .. .. ...+|...|+|+|..
T Consensus 2 ~~~~i~g~~~---~~~~~~l~~~i~~~G--g~v~~-----~~~---~~~thvI~~~~--~~-~~-~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLP---SEERDELKELIEKLG--GKVTS-----SVS---KKTTHVIVGSD--AG-PK-KLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCC---CcCHHHHHHHHHHcC--CEEec-----ccc---CCceEEEECCC--CC-ch-HHHHHHHcCCeEecH
Confidence 4677777642 136788999999887 33321 111 46677777655 22 11 278889999999875
Q ss_pred C
Q 016053 389 S 389 (396)
Q Consensus 389 ~ 389 (396)
+
T Consensus 65 ~ 65 (72)
T cd00027 65 E 65 (72)
T ss_pred H
Confidence 4
No 435
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=34.98 E-value=50 Score=25.53 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=25.0
Q ss_pred HHHHHHcCEEEecCC-CCCCCccHH--HHHHHhcCCCEEE
Q 016053 351 APYLAAIDVLVQNSQ-AWGECFGRI--TIEAMAFQLPVLV 387 (396)
Q Consensus 351 ~~~~~~aDv~v~pS~-~~~E~fg~~--~lEAma~G~PVI~ 387 (396)
..++.+||.+|.|-. .|.++.|+. +-.|.+.|+||..
T Consensus 74 ~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~~ 113 (116)
T PF09152_consen 74 RPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVFL 113 (116)
T ss_dssp HHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHhcceeEEecCCCccccccHHHHHHHHHHcCCeEEE
Confidence 468999999888754 378888875 6788999999864
No 436
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=34.95 E-value=3.2e+02 Score=24.12 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=24.0
Q ss_pred hhhhhhhcceEEEEcCchhh-hhhccCCcEEEEcCchhhHHHHHHHhcC
Q 016053 125 LEHKMWDRGVQVISAKGQET-INTALKADLIVLNTAVAGKWLDAVLKED 172 (396)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~DiV~~~~~~~~~~~~~~~~~~ 172 (396)
..+.+...|+.+..+..... .....+.|+|++.......++......+
T Consensus 53 ~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~g 101 (233)
T PRK05282 53 VAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERG 101 (233)
T ss_pred HHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCC
Confidence 44444445555443332221 2223678999888765544444444333
No 437
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.94 E-value=1.3e+02 Score=27.45 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=43.2
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhC--CCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch--------
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGV--GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ-------- 142 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~--G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 142 (396)
+++||+++.+ |...-+..|.++.+.. +++|.++...++. ........|++++.....
T Consensus 88 ~~~ri~vl~S-----g~gsnl~al~~~~~~~~~~~~i~~visn~~~--------~~~lA~~~gIp~~~~~~~~~~~~~~~ 154 (286)
T PRK06027 88 ERKRVVILVS-----KEDHCLGDLLWRWRSGELPVEIAAVISNHDD--------LRSLVERFGIPFHHVPVTKETKAEAE 154 (286)
T ss_pred cCcEEEEEEc-----CCCCCHHHHHHHHHcCCCCcEEEEEEEcChh--------HHHHHHHhCCCEEEeccCccccchhH
Confidence 3457887774 2235667777776663 5788776654432 333456668777653211
Q ss_pred ---hhhhhccCCcEEEEcC
Q 016053 143 ---ETINTALKADLIVLNT 158 (396)
Q Consensus 143 ---~~~~~~~~~DiV~~~~ 158 (396)
....+..++|+|++-.
T Consensus 155 ~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred HHHHHHHHHhCCCEEEEec
Confidence 1223457899998875
No 438
>PRK10867 signal recognition particle protein; Provisional
Probab=34.67 E-value=3.1e+02 Score=26.85 Aligned_cols=82 Identities=20% Similarity=0.129 Sum_probs=48.8
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhC-CCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc---hhh-------
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGV-GTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG---QET------- 144 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~-G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------- 144 (396)
+|.++.. ....|=.+.+..||..|.++ |..|.+++.+.... .....+.......+++++.... ...
T Consensus 101 ~vI~~vG-~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~--aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 101 TVIMMVG-LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP--AAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred EEEEEEC-CCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch--HHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 4444442 33355568999999999998 99999998553221 1112233344556777765421 111
Q ss_pred hhhccCCcEEEEcCch
Q 016053 145 INTALKADLIVLNTAV 160 (396)
Q Consensus 145 ~~~~~~~DiV~~~~~~ 160 (396)
.....++|+|++.++.
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 1133679999998853
No 439
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=34.56 E-value=2.8e+02 Score=25.98 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEec-cCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcEEEEcC
Q 016053 91 LLLMELAFLLRGVGTKVNWITI-QKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNT 158 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~ 158 (396)
+....++..+...|.+|+++++ .+-...........+.....|..+....... ....+.|+|+...
T Consensus 186 ~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~--ea~~~aDvvy~~~ 252 (335)
T PRK04523 186 AVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDID--SAYAGADVVYAKS 252 (335)
T ss_pred HHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHH--HHhCCCCEEEece
Confidence 7888999999999999999997 5432222222112222233454443222221 1235789998854
No 440
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=34.40 E-value=32 Score=21.52 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 016053 21 LLIMLSISTAIAFFIRA 37 (396)
Q Consensus 21 ~~~~~~~~~~~~~~~~~ 37 (396)
|--+|.+||+.|+.+|-
T Consensus 2 cttlfllstlamlwrrr 18 (54)
T PF15201_consen 2 CTTLFLLSTLAMLWRRR 18 (54)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 44567789999999886
No 441
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=34.38 E-value=47 Score=25.38 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCHHHHHH--HcCEEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCC
Q 016053 348 LTVAPYLA--AIDVLVQNSQAWGECFGRITIEAMAFQLPVLVLSELH 392 (396)
Q Consensus 348 ~~~~~~~~--~aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG 392 (396)
.++.+++. ..|++|=... .+...-.+.+++..|+.||+.+.+.
T Consensus 49 ~~~~~~~~~~~~dvvVE~t~--~~~~~~~~~~~L~~G~~VVt~nk~a 93 (117)
T PF03447_consen 49 TDLEELIDDPDIDVVVECTS--SEAVAEYYEKALERGKHVVTANKGA 93 (117)
T ss_dssp SSHHHHHTHTT-SEEEE-SS--CHHHHHHHHHHHHTTCEEEES-HHH
T ss_pred CCHHHHhcCcCCCEEEECCC--chHHHHHHHHHHHCCCeEEEECHHH
Confidence 56777777 8999997766 6766677889999999999988653
No 442
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.35 E-value=3.4e+02 Score=26.65 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=46.1
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcE
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADL 153 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di 153 (396)
.+||+++.. |+.. ..+++.|.+.|++|++.-..... ... .....+...|+.+..-.... ....++|+
T Consensus 14 ~~~i~v~G~----G~sG---~a~a~~L~~~G~~V~~~D~~~~~-~~~---~~~~~l~~~gi~~~~~~~~~--~~~~~~dl 80 (458)
T PRK01710 14 NKKVAVVGI----GVSN---IPLIKFLVKLGAKVTAFDKKSEE-ELG---EVSNELKELGVKLVLGENYL--DKLDGFDV 80 (458)
T ss_pred CCeEEEEcc----cHHH---HHHHHHHHHCCCEEEEECCCCCc-cch---HHHHHHHhCCCEEEeCCCCh--HHhccCCE
Confidence 357887762 2222 37778899999999886432211 100 11123445576665432211 11246888
Q ss_pred EEEcCc--hhhHHHHHHHhcCCC
Q 016053 154 IVLNTA--VAGKWLDAVLKEDVP 174 (396)
Q Consensus 154 V~~~~~--~~~~~~~~~~~~~~~ 174 (396)
|+.... .....+..+...++|
T Consensus 81 VV~Spgi~~~~p~~~~a~~~~i~ 103 (458)
T PRK01710 81 IFKTPSMRIDSPELVKAKEEGAY 103 (458)
T ss_pred EEECCCCCCCchHHHHHHHcCCc
Confidence 877652 233445555566655
No 443
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=34.06 E-value=1.1e+02 Score=24.41 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=26.4
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.|+++. ....|=.+.+..|++.|.++|+.|.++-..
T Consensus 2 vv~VvG--~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 2 VVQVVG--PKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp EEEEEE--STTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 466666 355777899999999999999999977733
No 444
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=33.89 E-value=4e+02 Score=24.96 Aligned_cols=88 Identities=8% Similarity=0.085 Sum_probs=50.5
Q ss_pred HHHHHcCCCCCCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ccchHHHHHHHHHHhcCC
Q 016053 259 HVRESLGVRNEDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN-AQTKFESELRNYVMQKKI 337 (396)
Q Consensus 259 ~~r~~~g~~~~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~-~~~~~~~~l~~~~~~~~l 337 (396)
-+++.+|-.-+...|.|+|-+... =..-++.++.. -++.+.++++..- ...+..+..++.+++.|.
T Consensus 145 Ti~e~~g~~l~gl~ia~vGD~~~~-v~~Sl~~~~~~------------~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~ 211 (334)
T PRK01713 145 TMIENCDKPLSEISYVYIGDARNN-MGNSLLLIGAK------------LGMDVRICAPKALLPEASLVEMCEKFAKESGA 211 (334)
T ss_pred HHHHHcCCCcCCcEEEEECCCccC-HHHHHHHHHHH------------cCCEEEEECCchhcCCHHHHHHHHHHHHHcCC
Confidence 455556522355789999975321 23334555543 2678899997431 111122334455554552
Q ss_pred CCcEEEecCcCCHHHHHHHcCEEEecC
Q 016053 338 QDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (396)
Q Consensus 338 ~~~V~~~g~~~~~~~~~~~aDv~v~pS 364 (396)
.+.. .+++.+.+..|||+....
T Consensus 212 --~~~~---~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 212 --RITV---TDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred --eEEE---EcCHHHHhCCCCEEEEcc
Confidence 3433 378899999999988753
No 445
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=33.89 E-value=85 Score=23.76 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=24.3
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
+|||+++.... +....+..+-+.++++|.++.+-.
T Consensus 2 kkILlvCg~G~--STSlla~k~k~~~~e~gi~~~i~a 36 (104)
T PRK09590 2 KKALIICAAGM--SSSMMAKKTTEYLKEQGKDIEVDA 36 (104)
T ss_pred cEEEEECCCch--HHHHHHHHHHHHHHHCCCceEEEE
Confidence 58999985322 223666777777888999888765
No 446
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=33.83 E-value=81 Score=27.64 Aligned_cols=38 Identities=24% Similarity=0.166 Sum_probs=26.4
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
+|+-+.+.-...|-.....+|+..|++.|++|.++-.+
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34444432333344588999999999999999998744
No 447
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=33.76 E-value=71 Score=29.73 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=29.2
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 77 VLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 77 Il~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.+++.+.+..++.+.++..|++++.++||+|+|+-.+
T Consensus 77 ~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~R 113 (345)
T COG0429 77 LVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFR 113 (345)
T ss_pred eEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecc
Confidence 3445555666666689999999999999999999843
No 448
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=33.76 E-value=73 Score=28.37 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=25.8
Q ss_pred cEEEEEeccCCCCChH-HHHHHHHHHHHhCCCEEEEEeccCC
Q 016053 75 KLVLLVSHELSLSGGP-LLLMELAFLLRGVGTKVNWITIQKP 115 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~-~~~~~l~~~L~~~G~~V~vi~~~~~ 115 (396)
|+||+.+.. |.. .-+..|.++|++.| +|+|+.+...
T Consensus 1 M~ILltNDD----Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 37 (244)
T TIGR00087 1 MKILLTNDD----GIHSPGIRALYQALKELG-EVTVVAPARQ 37 (244)
T ss_pred CeEEEECCC----CCCCHhHHHHHHHHHhCC-CEEEEeCCCC
Confidence 488876653 332 56778888898888 9999986543
No 449
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=33.73 E-value=2.2e+02 Score=26.23 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=43.5
Q ss_pred cccEEEEEeccCCCCCh-HHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCC
Q 016053 73 KSKLVLLVSHELSLSGG-PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKA 151 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (396)
+..+|+++.. |. .+....++..++..|.+|.++++.+-..... +.+.....|..+........ ...+.
T Consensus 149 ~g~~va~vGD-----~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~----~~~~~~~~G~~v~~~~d~~~--a~~~a 217 (301)
T TIGR00670 149 DGLKIALVGD-----LKYGRTVHSLAEALTRFGVEVYLISPEELRMPKE----ILEELKAKGIKVRETESLEE--VIDEA 217 (301)
T ss_pred CCCEEEEEcc-----CCCCcHHHHHHHHHHHcCCEEEEECCccccCCHH----HHHHHHHcCCEEEEECCHHH--HhCCC
Confidence 4468888873 21 3788999999999999999999765321111 11222233444432222211 12478
Q ss_pred cEEEEc
Q 016053 152 DLIVLN 157 (396)
Q Consensus 152 DiV~~~ 157 (396)
|+|+..
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 888874
No 450
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=33.66 E-value=71 Score=31.47 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=27.9
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
++|++++...+.||=. .-+|+.|.+.|++|+|+....
T Consensus 60 ~~VlVlcG~GNNGGDG---lv~AR~L~~~G~~V~v~~~~~ 96 (462)
T PLN03049 60 RRVLALCGPGNNGGDG---LVAARHLHHFGYKPSICYPKR 96 (462)
T ss_pred CEEEEEECCCCCHHHH---HHHHHHHHHCCCceEEEEECC
Confidence 4799998877777633 345788889999999998543
No 451
>PRK09273 hypothetical protein; Provisional
Probab=33.60 E-value=62 Score=27.91 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=28.5
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
|||+++.....-+=-+.....|.+.|.+.||+|.=+..
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~ 38 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYGM 38 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCC
Confidence 58888875433333347888999999999999977664
No 452
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=33.56 E-value=1e+02 Score=24.25 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=25.7
Q ss_pred EEEEeccCCCCCh-HHHHHHHHHHHHhCCCEE-EEEe
Q 016053 77 VLLVSHELSLSGG-PLLLMELAFLLRGVGTKV-NWIT 111 (396)
Q Consensus 77 Il~v~~~~~~gG~-~~~~~~l~~~L~~~G~~V-~vi~ 111 (396)
++++....+.|+. .+...++++++.+.||+| .|+.
T Consensus 2 ~~iv~~~~P~~~~~~~~al~~A~aa~~~gh~v~~vFf 38 (127)
T TIGR03012 2 YTLLVTGPPYGTQAASSAYQFAQALLAKGHEIVRVFF 38 (127)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 4555555555553 389999999999999995 6766
No 453
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=33.56 E-value=2.9e+02 Score=26.56 Aligned_cols=101 Identities=9% Similarity=0.107 Sum_probs=53.3
Q ss_pred CCEEEEEEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCc-
Q 016053 269 EDLLFAIINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKT- 347 (396)
Q Consensus 269 ~~~~il~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~- 347 (396)
+..+-+..+++...+-...+++.+.+ ++|+.++++.-..++ ..+..++ . .+-...+.+++..
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~----------~~~~~~i~~t~~t~~----~~~~~~~-~--~~~~~~~~~~P~d~ 112 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRK----------RYPDLPILVTTMTPT----GSERAQA-L--FGDDVEHRYLPYDL 112 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHH----------hCCCCcEEEeCCCcc----HHHHHHH-h--cCCCceEEEecCCc
Confidence 44566667776544444444433332 337777665543321 1222222 1 1111224444432
Q ss_pred -CCHHHHHHH--cCEEEecCCCCCCCccHHHHHHHhcCCCEEEcC
Q 016053 348 -LTVAPYLAA--IDVLVQNSQAWGECFGRITIEAMAFQLPVLVLS 389 (396)
Q Consensus 348 -~~~~~~~~~--aDv~v~pS~~~~E~fg~~~lEAma~G~PVI~t~ 389 (396)
..+..++.. -|+++.- . .|-++..+..+-..|+|++.++
T Consensus 113 ~~~~~~~l~~~~Pd~v~~~-~--~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 113 PGAVRRFLRFWRPKLVIIM-E--TELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred HHHHHHHHHhhCCCEEEEE-e--cchhHHHHHHHHHCCCCEEEEe
Confidence 235555544 3777653 3 4677888888888999999864
No 454
>PRK06179 short chain dehydrogenase; Provisional
Probab=33.56 E-value=72 Score=28.39 Aligned_cols=24 Identities=17% Similarity=-0.092 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecc
Q 016053 90 PLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
...-..+++.|.++|++|.++...
T Consensus 14 g~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 14 SGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345667888899999999887743
No 455
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=33.47 E-value=2.8e+02 Score=23.09 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=26.6
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
|||.+-. .+..|-.+.+..+++.|++.|+.|-=+.
T Consensus 6 mki~ITG--~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITG--RPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeC--CCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 5777555 2335556999999999999999998555
No 456
>PLN00414 glycosyltransferase family protein
Probab=33.45 E-value=4.2e+02 Score=26.01 Aligned_cols=102 Identities=12% Similarity=0.026 Sum_probs=58.9
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccC-C--CCchhhhhhhhhhhhhcceEEEEcCchhhhhhcc
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK-P--SEEDEVIYSLEHKMWDRGVQVISAKGQETINTAL 149 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (396)
....|++|+-.....-....+.+++.+|...|....++.... . .........+.+.....|.-+...-.+..+....
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~ 329 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHP 329 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCC
Confidence 345788888543333335789999999999999976665321 1 1111122234444445565443333344444444
Q ss_pred CCcEEEEcCchhhHHHHHHHhcCCCcc
Q 016053 150 KADLIVLNTAVAGKWLDAVLKEDVPRV 176 (396)
Q Consensus 150 ~~DiV~~~~~~~~~~~~~~~~~~~~~~ 176 (396)
..+..++|+.+... ..+...++|.+
T Consensus 330 ~v~~fvtH~G~nS~--~Ea~~~GvP~l 354 (446)
T PLN00414 330 SVGCFVNHCGFGSM--WESLVSDCQIV 354 (446)
T ss_pred ccceEEecCchhHH--HHHHHcCCCEE
Confidence 55778999877655 34556677754
No 457
>PRK12862 malic enzyme; Reviewed
Probab=33.38 E-value=2.4e+02 Score=29.93 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=50.5
Q ss_pred CCCEEEEEEecCCCccchHHHHHHHHHHhcCCC-CcEEEecC------------------------cCCHHHHHHHcCEE
Q 016053 306 VPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQ-DRVHFVNK------------------------TLTVAPYLAAIDVL 360 (396)
Q Consensus 306 ~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~-~~V~~~g~------------------------~~~~~~~~~~aDv~ 360 (396)
-.+.++++.|.|. ----+-++....|+. .+|.++.. ..++.+.+..+|+|
T Consensus 191 ~~~~~iv~~GaGa-----ag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~ 265 (763)
T PRK12862 191 IEDVKLVASGAGA-----AALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVF 265 (763)
T ss_pred hhhcEEEEEChhH-----HHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEE
Confidence 3577888888774 223344444445664 35555441 02578888889999
Q ss_pred EecCCCCCCCccHHHHHHHhcCCCEEE
Q 016053 361 VQNSQAWGECFGRITIEAMAFQLPVLV 387 (396)
Q Consensus 361 v~pS~~~~E~fg~~~lEAma~G~PVI~ 387 (396)
+=.|. .-.|.--+++.|+ ..|+|-
T Consensus 266 iG~s~--~g~~~~~~v~~M~-~~piif 289 (763)
T PRK12862 266 LGLSA--AGVLKPEMVKKMA-PRPLIF 289 (763)
T ss_pred EEcCC--CCCCCHHHHHHhc-cCCEEE
Confidence 99888 7778888999998 778774
No 458
>COG4327 Predicted membrane protein [Function unknown]
Probab=33.34 E-value=42 Score=24.53 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=14.6
Q ss_pred hHHHHH-HHHHHHHHHHHHHHhhcc
Q 016053 16 RWILAL-LIMLSISTAIAFFIRAAL 39 (396)
Q Consensus 16 ~~~~~~-~~~~~~~~~~~~~~~~~~ 39 (396)
+|+..| ++-+.||.++.+++|.-+
T Consensus 19 tli~~lL~vwflVSfvvi~fa~als 43 (101)
T COG4327 19 TLIAALLGVWFLVSFVVILFARALS 43 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444333 344577888888886643
No 459
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=33.31 E-value=25 Score=25.16 Aligned_cols=23 Identities=22% Similarity=0.004 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEec
Q 016053 90 PLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
|.-+.++.++|+++||+|.-+..
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~ 29 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLEN 29 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCC
Confidence 44567889999999999987763
No 460
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=33.29 E-value=1.9e+02 Score=24.71 Aligned_cols=92 Identities=10% Similarity=0.104 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCccchHHHHHHHHHHhcCCCC-cEEEecCc-CC-HHHHHHHcC
Q 016053 282 GKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNAQTKFESELRNYVMQKKIQD-RVHFVNKT-LT-VAPYLAAID 358 (396)
Q Consensus 282 ~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~-~V~~~g~~-~~-~~~~~~~aD 358 (396)
.|=+..+.+|+.-+... ..-++++||..+ .....+++.++..|-.. +=.++|.. .+ ...-+..=|
T Consensus 43 ~kT~~~L~~A~~~i~~i--------~~~~ILfVgtk~----~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pd 110 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRI--------EPEDILVVSARI----YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPE 110 (196)
T ss_pred HHHHHHHHHHHHHHHHh--------hCCeEEEEecCH----HHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCC
Confidence 44455555555544332 134677778654 23445666666554321 11355542 22 112244556
Q ss_pred EEEecCCCCCCCccHHHHHHHhcCCCEEEc
Q 016053 359 VLVQNSQAWGECFGRITIEAMAFQLPVLVL 388 (396)
Q Consensus 359 v~v~pS~~~~E~fg~~~lEAma~G~PVI~t 388 (396)
+++.... ..=..++.||...|.|+|+-
T Consensus 111 lliv~dp---~~~~~Av~EA~~l~IP~Iai 137 (196)
T TIGR01012 111 VVVVTDP---RADHQALKEASEVGIPIVAL 137 (196)
T ss_pred EEEEECC---ccccHHHHHHHHcCCCEEEE
Confidence 6655332 22347789999999999983
No 461
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=33.27 E-value=79 Score=28.58 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=25.6
Q ss_pred cEEEEEeccCCCCChH--HHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~ 111 (396)
++|.++ .-||.. +...+|+.+|.++|+.|.++=
T Consensus 2 ~~i~~~----gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 2 RKFCFY----GKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred cEEEEE----CCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 356655 245655 778999999999999999885
No 462
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=33.17 E-value=2.3e+02 Score=27.65 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=25.3
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.+|||++. +| .....+++++++.|+++.++...
T Consensus 2 ~~~ililg-----~g--~~~~~~~~~a~~lG~~~v~~~~~ 34 (450)
T PRK06111 2 FQKVLIAN-----RG--EIAVRIIRTCQKLGIRTVAIYSE 34 (450)
T ss_pred cceEEEEC-----Cc--HHHHHHHHHHHHcCCeEEEEech
Confidence 46888886 33 44677888999999999998743
No 463
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=33.16 E-value=94 Score=22.30 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=33.7
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCC
Q 016053 311 AVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQ 365 (396)
Q Consensus 311 l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~ 365 (396)
++++|.|...+.-....+++...+.++...+..... .++.+.+..+|+++.+..
T Consensus 4 livC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~-~~~~~~~~~~Dliist~~ 57 (89)
T cd05566 4 LVACGTGVATSTVVASKVKELLKENGIDVKVEQCKI-AEVPSLLDDADLIVSTTK 57 (89)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecH-HHhhcccCCCcEEEEcCC
Confidence 567777764444456778888877777544443332 333335678898887655
No 464
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=33.14 E-value=2.9e+02 Score=28.10 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=28.9
Q ss_pred CHHHHHHH--cCEEEecCCCCCCCccHHHHHHHh--cCCCEEE
Q 016053 349 TVAPYLAA--IDVLVQNSQAWGECFGRITIEAMA--FQLPVLV 387 (396)
Q Consensus 349 ~~~~~~~~--aDv~v~pS~~~~E~fg~~~lEAma--~G~PVI~ 387 (396)
++.+.+.. .|++|=.|.. .-.|.--++++|+ +..|+|-
T Consensus 392 ~L~e~v~~vkptvLIG~S~~-~g~Ft~evi~~Ma~~~~rPIIF 433 (581)
T PLN03129 392 SLLEAVKAIKPTVLIGLSGV-GGTFTKEVLEAMASLNERPIIF 433 (581)
T ss_pred CHHHHHhccCCCEEEEecCC-CCCCCHHHHHHHHhcCCCCEEE
Confidence 56777777 7999987751 4567788999998 7788874
No 465
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=33.05 E-value=2.5e+02 Score=27.48 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=46.2
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCc----h----hhhhh
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKG----Q----ETINT 147 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~ 147 (396)
.|+++. ....|=.+.+..|+..|.+.|+.|.+++.+.... .....+.......+++++.... . ..+..
T Consensus 97 vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~--aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 97 TIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP--AAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH--HHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 455543 2334545888999999999999999998553221 1112233333444666554321 1 11223
Q ss_pred ccCCcEEEEcCc
Q 016053 148 ALKADLIVLNTA 159 (396)
Q Consensus 148 ~~~~DiV~~~~~ 159 (396)
....|+|++.++
T Consensus 173 ~~~~DvVIIDTA 184 (437)
T PRK00771 173 FKKADVIIVDTA 184 (437)
T ss_pred hhcCCEEEEECC
Confidence 345699999885
No 466
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=33.05 E-value=92 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=25.7
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEE
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWI 110 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi 110 (396)
|+++++... ..|-.++....+++.|...|++|.++
T Consensus 1 M~i~IiY~S-~tGnTe~iA~~ia~~l~~~g~~v~~~ 35 (140)
T TIGR01754 1 MRILLAYLS-LSGNTEEVAFMIQDYLQKDGHEVDIL 35 (140)
T ss_pred CeEEEEEEC-CCChHHHHHHHHHHHHhhCCeeEEec
Confidence 366666632 33666788999999999999998743
No 467
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=33.00 E-value=1.8e+02 Score=25.24 Aligned_cols=62 Identities=23% Similarity=0.214 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCchhhhhhccCCcEEEEcCchhh
Q 016053 91 LLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQETINTALKADLIVLNTAVAG 162 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiV~~~~~~~~ 162 (396)
..=.-|+..|.+.||+|.+.+.+.+.. +.......+..+. ...........|+|+..-|+..
T Consensus 11 niG~alA~~~a~ag~eV~igs~r~~~~-------~~a~a~~l~~~i~---~~~~~dA~~~aDVVvLAVP~~a 72 (211)
T COG2085 11 NIGSALALRLAKAGHEVIIGSSRGPKA-------LAAAAAALGPLIT---GGSNEDAAALADVVVLAVPFEA 72 (211)
T ss_pred hHHHHHHHHHHhCCCeEEEecCCChhH-------HHHHHHhhccccc---cCChHHHHhcCCEEEEeccHHH
Confidence 444568889999999999998665531 1111111122211 2222333456899998877543
No 468
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=32.97 E-value=35 Score=22.58 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.6
Q ss_pred HHHHHHHhcCCCEEEc
Q 016053 373 RITIEAMAFQLPVLVL 388 (396)
Q Consensus 373 ~~~lEAma~G~PVI~t 388 (396)
-.+.|++..|.||+|-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4589999999999973
No 469
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.92 E-value=3.3e+02 Score=23.66 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=24.5
Q ss_pred cCEEE-ecCCCCCCCccHHHHHHHhcCCCEEEcCCC
Q 016053 357 IDVLV-QNSQAWGECFGRITIEAMAFQLPVLVLSEL 391 (396)
Q Consensus 357 aDv~v-~pS~~~~E~fg~~~lEAma~G~PVI~t~~g 391 (396)
.|.++ .|.. .+...-.+-++...|+|||..+.+
T Consensus 56 ~d~Iiv~~~~--~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 56 VDGIIVSPVD--PDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp ESEEEEESSS--TTTTHHHHHHHHHTTSEEEEESST
T ss_pred CCEEEecCCC--HHHHHHHHHHHhhcCceEEEEecc
Confidence 56544 5555 566667778888899999998877
No 470
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=32.74 E-value=1.2e+02 Score=25.96 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=27.4
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHh-CCCEEEEEecc
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRG-VGTKVNWITIQ 113 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~-~G~~V~vi~~~ 113 (396)
+++.+++.-...|-.....+|+.+|.+ .|++|.++-.+
T Consensus 36 ~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 36 NLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 555555444445556889999999986 69999988633
No 471
>PRK12743 oxidoreductase; Provisional
Probab=32.60 E-value=1.6e+02 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 88 GGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 88 G~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
|..-.=..+++.|.++|++|.++..
T Consensus 10 as~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 10 SDSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeC
Confidence 3334667789999999999987754
No 472
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=32.53 E-value=1.2e+02 Score=25.37 Aligned_cols=33 Identities=24% Similarity=0.022 Sum_probs=23.5
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
-||+++++...- .-...+++.|.++|+.+..++
T Consensus 83 DRVllfs~~~~~----~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 83 DRVLLFSPFSTD----EEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp -EEEEEES-S------HHHHHHHHHHHHHT--EEEEE
T ss_pred ceEEEEeCCCCC----HHHHHHHHHHHHCCCCEEEEE
Confidence 489999964322 467788999999999999999
No 473
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=32.45 E-value=88 Score=29.23 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=23.6
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
+.|+|++.. |....=..+++.|.++|++|+++..
T Consensus 3 ~~k~ilItG------atG~IG~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 3 QGKKVLVTG------HTGFKGSWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CCCEEEEEC------CCChhHHHHHHHHHHCCCEEEEEeC
Confidence 445666544 3334557788999999999988763
No 474
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=32.31 E-value=1.2e+02 Score=28.86 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=24.9
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEeccC
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQK 114 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~~ 114 (396)
++|+|+++. +| .....++.++++.|++|.++....
T Consensus 11 ~~~~ilIiG-----~g--~~~~~~~~a~~~~G~~v~~~~~~~ 45 (395)
T PRK09288 11 SATRVMLLG-----SG--ELGKEVAIEAQRLGVEVIAVDRYA 45 (395)
T ss_pred CCCEEEEEC-----CC--HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 345888876 23 345567778889999999888543
No 475
>PRK06114 short chain dehydrogenase; Provisional
Probab=32.26 E-value=2.2e+02 Score=24.90 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=23.5
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 76 LVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 76 kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|+.+|+ ||..-.=..+++.|.+.|++|.++...
T Consensus 9 k~~lVt-----G~s~gIG~~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 9 QVAFVT-----GAGSGIGQRIAIGLAQAGADVALFDLR 41 (254)
T ss_pred CEEEEE-----CCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 455566 344456778889999999999887643
No 476
>PRK07236 hypothetical protein; Provisional
Probab=32.22 E-value=69 Score=30.47 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=26.0
Q ss_pred ccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 72 MKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 72 m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
|+.++|++|. || ..=..++..|.+.|++|+|+=.
T Consensus 4 ~~~~~ViIVG-----aG--~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIG-----GS--LGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCeEEEEC-----CC--HHHHHHHHHHHhCCCCEEEEec
Confidence 5667899887 33 3445678888899999999974
No 477
>PRK06180 short chain dehydrogenase; Provisional
Probab=32.14 E-value=77 Score=28.44 Aligned_cols=23 Identities=17% Similarity=-0.071 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEec
Q 016053 90 PLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
.-.=..+++.|.++|++|.++..
T Consensus 14 ggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 14 SGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred ChHHHHHHHHHHhCcCEEEEEeC
Confidence 34566778888889999988764
No 478
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=32.10 E-value=87 Score=30.94 Aligned_cols=77 Identities=18% Similarity=0.088 Sum_probs=51.9
Q ss_pred CEEEEEEec--CCCccchHHHHHHHHHHhcCCCCcEEEecC--cCCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhcCC
Q 016053 308 SVHAVIIGS--DMNAQTKFESELRNYVMQKKIQDRVHFVNK--TLTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAFQL 383 (396)
Q Consensus 308 ~~~l~ivG~--g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~--~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~G~ 383 (396)
+-++-|+|. +....+.+..+++++.+..|++.+..+.+. ++|+.. +..|.+-|.++. . +|..+-| .+|+
T Consensus 152 ~~~VNIiG~~~g~~~~~~Dl~ElkrlL~~~Gi~vn~v~~~Gtsv~di~~-l~~A~~nIv~~~--~--~a~~L~e--~~Gv 224 (468)
T TIGR02014 152 KPRVNIIGPTYGCFNMPSDLAEIRRLVEGIGAEVAHVYPLGSHLAEITK-LKNADANIVMYR--E--FGRGLAE--KLGK 224 (468)
T ss_pred CCeEEEECCCcCcCCChhHHHHHHHHHHHcCCcEEEEcCCcCCHHHHHh-hccCcEEEeecH--H--HHHHHHH--HHCC
Confidence 346888883 333334578899999999999987777664 356544 667777666655 2 5555444 4799
Q ss_pred CEEEcCCC
Q 016053 384 PVLVLSEL 391 (396)
Q Consensus 384 PVI~t~~g 391 (396)
|.+.+..|
T Consensus 225 P~l~~PiG 232 (468)
T TIGR02014 225 PYLQAPIG 232 (468)
T ss_pred CccccCCC
Confidence 99876543
No 479
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.96 E-value=1.1e+02 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEecc
Q 016053 91 LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.....++..|.++|++|+|....
T Consensus 19 ssaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 19 SSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred hHHHHHHHHhhccCccEEEecCH
Confidence 46677889999999999999743
No 480
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=31.73 E-value=3.8e+02 Score=26.03 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=42.6
Q ss_pred EEEEEEecCCCccchHHHHHHHHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecCCCCCCCccHHHHH-HHhcCCCEEE
Q 016053 309 VHAVIIGSDMNAQTKFESELRNYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAWGECFGRITIE-AMAFQLPVLV 387 (396)
Q Consensus 309 ~~l~ivG~g~~~~~~~~~~l~~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lE-Ama~G~PVI~ 387 (396)
-++.|+... .+.-++++++++.. + -..+++.+++..+||++..+.+...-.+...+| ++.-....+.
T Consensus 203 ~~i~IaNRT-------~erA~~La~~~~~~--~---~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~li 270 (414)
T COG0373 203 KKITIANRT-------LERAEELAKKLGAE--A---VALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLI 270 (414)
T ss_pred CEEEEEcCC-------HHHHHHHHHHhCCe--e---ecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEE
Confidence 456666664 36667777777611 1 123789999999999997654112233444443 3443334455
Q ss_pred cCCCCCC
Q 016053 388 LSELHPS 394 (396)
Q Consensus 388 t~~gG~~ 394 (396)
.|.+-|+
T Consensus 271 vDiavPR 277 (414)
T COG0373 271 VDIAVPR 277 (414)
T ss_pred EEecCCC
Confidence 5655543
No 481
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=31.69 E-value=4.6e+02 Score=24.92 Aligned_cols=105 Identities=12% Similarity=-0.007 Sum_probs=62.6
Q ss_pred EEecccCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHhcCCCCcEEEec
Q 016053 275 IINSVSRGKGQDLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMNA---------QTKFESELRNYVMQKKIQDRVHFVN 345 (396)
Q Consensus 275 ~vG~l~~~Kg~~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~~---------~~~~~~~l~~~~~~~~l~~~V~~~g 345 (396)
++|- ..-..-+.+++.++.+.+ ..++++-.|.-.++ ..+....+.+..++.|++ +.-..
T Consensus 122 iaGp-c~iE~~~~~~~~A~~lk~---------~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~--~~t~v 189 (360)
T PRK12595 122 IFGP-CSVESYEQVEAVAKALKA---------KGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLA--VISEI 189 (360)
T ss_pred EEec-ccccCHHHHHHHHHHHHH---------cCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCC--EEEee
Confidence 3454 333345566666666643 34555554532211 123456788888888876 32223
Q ss_pred C-cCCHHHHHHHcCEEEecCCCCCCCccHHHHHH-HhcCCCEEEcCCCCCC
Q 016053 346 K-TLTVAPYLAAIDVLVQNSQAWGECFGRITIEA-MAFQLPVLVLSELHPS 394 (396)
Q Consensus 346 ~-~~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEA-ma~G~PVI~t~~gG~~ 394 (396)
+ .+++..+...+|++-.+|. +..-..++++ ...|+||+.++.-+++
T Consensus 190 ~d~~~~~~l~~~vd~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G~~~t 237 (360)
T PRK12595 190 VNPADVEVALDYVDVIQIGAR---NMQNFELLKAAGRVNKPVLLKRGLSAT 237 (360)
T ss_pred CCHHHHHHHHHhCCeEEECcc---cccCHHHHHHHHccCCcEEEeCCCCCC
Confidence 2 3566666677999999997 4444555554 5579999998875433
No 482
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.55 E-value=2.4e+02 Score=21.71 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=9.1
Q ss_pred EEEEecCCccch
Q 016053 232 TYVVHLGNSKEL 243 (396)
Q Consensus 232 ~~vI~ngid~~~ 243 (396)
..|++.|.+.+.
T Consensus 28 ~~vi~lG~~vp~ 39 (122)
T cd02071 28 FEVIYTGLRQTP 39 (122)
T ss_pred CEEEECCCCCCH
Confidence 788999987653
No 483
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=31.37 E-value=5.5e+02 Score=25.75 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=52.0
Q ss_pred CEEEEEEecCC--CccchHHHHHHHHHHhcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHh--c
Q 016053 308 SVHAVIIGSDM--NAQTKFESELRNYVMQKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMA--F 381 (396)
Q Consensus 308 ~~~l~ivG~g~--~~~~~~~~~l~~~~~~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma--~ 381 (396)
+-++-|+|... ...+.+..+++++.+.+|++-|..|.+.. +|+.. +..|++-|..+. .+|..+.|.|. +
T Consensus 163 ~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~-~~~A~~NIvl~~----~~g~~~A~~Le~~f 237 (513)
T CHL00076 163 KPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKN-LPKAWFNIVPYR----EVGLMTAKYLEKEF 237 (513)
T ss_pred CCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccCcEEEEech----hhhHHHHHHHHHHh
Confidence 44688888652 12345778899999999999887777643 55543 556666555544 26677788775 5
Q ss_pred CCCEEEc
Q 016053 382 QLPVLVL 388 (396)
Q Consensus 382 G~PVI~t 388 (396)
|+|.+..
T Consensus 238 giP~i~~ 244 (513)
T CHL00076 238 GMPYIST 244 (513)
T ss_pred CCCeEee
Confidence 9998874
No 484
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=31.27 E-value=83 Score=31.85 Aligned_cols=39 Identities=13% Similarity=-0.055 Sum_probs=25.1
Q ss_pred CcccccccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 68 PLSFMKSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 68 ~~~~m~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
..+.++ .|+++|+ ||....=..+++.|.++|++|.++..
T Consensus 74 ~~~~~~-gKvVLVT-----GATGgIG~aLAr~LLk~G~~Vval~R 112 (576)
T PLN03209 74 ELDTKD-EDLAFVA-----GATGKVGSRTVRELLKLGFRVRAGVR 112 (576)
T ss_pred ccccCC-CCEEEEE-----CCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 343333 4555566 33335666777888889999998864
No 485
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=31.20 E-value=1.6e+02 Score=30.19 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch--hhhhh--ccCCcEEEEcCc
Q 016053 90 PLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETINT--ALKADLIVLNTA 159 (396)
Q Consensus 90 ~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~DiV~~~~~ 159 (396)
.+.-..+++.|.++|++++++-.+.. ..+..+..|.+++.-... ..+.. ..++|++++...
T Consensus 409 Gr~G~~va~~L~~~g~~vvvID~d~~---------~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 409 GRFGQVIGRLLMANKMRITVLERDIS---------AVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred chHHHHHHHHHHhCCCCEEEEECCHH---------HHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 37778899999999999998864322 222334456666443332 22222 367888876653
No 486
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=31.19 E-value=1e+02 Score=27.44 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=25.4
Q ss_pred cEEEEEeccCCCCChH--HHHHHHHHHHHhCCCEEEEEe
Q 016053 75 KLVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~ 111 (396)
++|.++ . -||.. +...+|+.+|.++|++|.++=
T Consensus 2 ~~iav~-~---KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 2 RQIAIY-G---KGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred cEEEEE-e---CCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 355554 2 44544 788999999999999999996
No 487
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=31.07 E-value=79 Score=29.68 Aligned_cols=42 Identities=19% Similarity=-0.028 Sum_probs=29.5
Q ss_pred ccccEEEEEeccCCC-CChH-HHHHHHHHHHHhCCCEEEEEecc
Q 016053 72 MKSKLVLLVSHELSL-SGGP-LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 72 m~~~kIl~v~~~~~~-gG~~-~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
|+++||+++....+. --.. .....++++|.+.||+|..+...
T Consensus 1 m~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~ 44 (343)
T PRK14568 1 MNRIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGIT 44 (343)
T ss_pred CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEEC
Confidence 456789999855433 1111 56678889999999999988743
No 488
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=31.03 E-value=2.8e+02 Score=23.87 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHHhCCCEEEEEeccCCCCchhhhhhhhhhhhhcceEEEEcCch--hhhh-hccCCcEEEEcCch---
Q 016053 87 SGGPLLLMELAFLLRGVGTKVNWITIQKPSEEDEVIYSLEHKMWDRGVQVISAKGQ--ETIN-TALKADLIVLNTAV--- 160 (396)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~DiV~~~~~~--- 160 (396)
|+....=..++++|.+.|++|.+++..... .....+...|..++..... ..+. ...+.|.|++..+.
T Consensus 5 GatG~~G~~v~~~L~~~~~~V~~l~R~~~~-------~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 5 GATGNQGRSVVRALLSAGFSVRALVRDPSS-------DRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHP 77 (233)
T ss_dssp TTTSHHHHHHHHHHHHTTGCEEEEESSSHH-------HHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCC
T ss_pred CCccHHHHHHHHHHHhCCCCcEEEEeccch-------hhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchh
Confidence 333466677888888899999999955321 1333455567777655432 2222 23689999877751
Q ss_pred -----hhHHHHHHHhcCCCc
Q 016053 161 -----AGKWLDAVLKEDVPR 175 (396)
Q Consensus 161 -----~~~~~~~~~~~~~~~ 175 (396)
....+..+.+.++++
T Consensus 78 ~~~~~~~~li~Aa~~agVk~ 97 (233)
T PF05368_consen 78 SELEQQKNLIDAAKAAGVKH 97 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SE
T ss_pred hhhhhhhhHHHhhhccccce
Confidence 223555667777664
No 489
>PRK12937 short chain dehydrogenase; Provisional
Probab=30.96 E-value=1.1e+02 Score=26.52 Aligned_cols=26 Identities=15% Similarity=-0.081 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 87 SGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
||..-.-..+++.|.++|++|.++..
T Consensus 12 G~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 12 GASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEecC
Confidence 44446778889999999999877653
No 490
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=30.94 E-value=72 Score=28.77 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCEEEEEecc
Q 016053 92 LLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 92 ~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.=.++++.|+++|++|.++..+
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCc
Confidence 5578899999999999999854
No 491
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=30.93 E-value=4.7e+02 Score=25.22 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=49.4
Q ss_pred HHHHHHcCCC--CCCEEEEEEec--ccCCCCH---HHHHHHHHHHHHHHHhhccCCCCEEEEEEecCCC-ccchHHHHHH
Q 016053 258 EHVRESLGVR--NEDLLFAIINS--VSRGKGQ---DLFLHSFYESLELIKEKKLEVPSVHAVIIGSDMN-AQTKFESELR 329 (396)
Q Consensus 258 ~~~r~~~g~~--~~~~~il~vG~--l~~~Kg~---~~li~a~~~l~~~~~~~~~~~~~~~l~ivG~g~~-~~~~~~~~l~ 329 (396)
--+++.+|-. -+...|+++|- +...++. ..++.++.. -++.+.++++..- ..++..+..+
T Consensus 173 ~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~------------lG~~v~~~~P~~~~~~~~i~~~a~ 240 (395)
T PRK07200 173 LHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTR------------FGMDVTLAHPEGYDLMPEVVEVAK 240 (395)
T ss_pred HHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHH------------cCCEEEEECCCccCCCHHHHHHHH
Confidence 4466667631 13346666664 3234443 344444443 3689999997531 1122223334
Q ss_pred HHHHhcCCCCcEEEecCcCCHHHHHHHcCEEEecC
Q 016053 330 NYVMQKKIQDRVHFVNKTLTVAPYLAAIDVLVQNS 364 (396)
Q Consensus 330 ~~~~~~~l~~~V~~~g~~~~~~~~~~~aDv~v~pS 364 (396)
+.+++.| ..+.+ .+++.+.+..|||+..-+
T Consensus 241 ~~~~~~G--~~i~~---~~d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 241 KNAKASG--GSFRQ---VNSMEEAFKDADIVYPKS 270 (395)
T ss_pred HHHHHcC--CeEEE---EcCHHHHhCCCCEEEEcC
Confidence 4455555 23433 368899999999987753
No 492
>PLN02572 UDP-sulfoquinovose synthase
Probab=30.87 E-value=1.2e+02 Score=29.58 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=23.7
Q ss_pred cccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEe
Q 016053 73 KSKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWIT 111 (396)
Q Consensus 73 ~~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~ 111 (396)
++|+||+. ||....=..|++.|.++|++|.++.
T Consensus 46 ~~k~VLVT------GatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVI------GGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEE------CCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 33566644 3444566788899999999999874
No 493
>PRK06182 short chain dehydrogenase; Validated
Probab=30.69 E-value=1.9e+02 Score=25.69 Aligned_cols=22 Identities=18% Similarity=-0.135 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEec
Q 016053 91 LLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 91 ~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
..=..+++.|.++|++|.++..
T Consensus 14 giG~~la~~l~~~G~~V~~~~r 35 (273)
T PRK06182 14 GIGKATARRLAAQGYTVYGAAR 35 (273)
T ss_pred hHHHHHHHHHHHCCCEEEEEeC
Confidence 3556678888889999988763
No 494
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=30.58 E-value=21 Score=35.43 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 87 SGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 87 gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
++.-..+..+++.|.++||+|+++++
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~ 35 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTP 35 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEe
Confidence 34558999999999999999999984
No 495
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=30.55 E-value=1.2e+02 Score=31.14 Aligned_cols=37 Identities=24% Similarity=0.132 Sum_probs=28.7
Q ss_pred cEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEec
Q 016053 75 KLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITI 112 (396)
Q Consensus 75 ~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~ 112 (396)
|+|+-+.. .+..|-.+.+.+|+..|+++|+.|-++=.
T Consensus 10 ~~vi~ivG-~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 10 IPLLGFCA-YSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred ccEEEEEc-CCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 44544443 35577779999999999999999999874
No 496
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=30.24 E-value=4.9e+02 Score=24.80 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=66.3
Q ss_pred HHHHHHcCCCCCCEEEEEEecc--cCCCCHHHHHHHHHHHHHHH-H-hhccCCCCEEEEEEecCCCccchHHHHHHHHHH
Q 016053 258 EHVRESLGVRNEDLLFAIINSV--SRGKGQDLFLHSFYESLELI-K-EKKLEVPSVHAVIIGSDMNAQTKFESELRNYVM 333 (396)
Q Consensus 258 ~~~r~~~g~~~~~~~il~vG~l--~~~Kg~~~li~a~~~l~~~~-~-~~~~~~~~~~l~ivG~g~~~~~~~~~~l~~~~~ 333 (396)
.+++++++. +++.+..+.+ ....|.+..++++.+ .+ + .. +..+-.+.|+|...... .+..+++++.+
T Consensus 98 ~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~~---~~~~~~~--~~~~~~VNiiG~~~~~~-~d~~el~~lL~ 168 (398)
T PF00148_consen 98 RELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALAE---QLVKPPE--EKKPRSVNIIGGSPLGP-GDLEELKRLLE 168 (398)
T ss_dssp HHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHHH---HHTTGTT--TTSSSEEEEEEESTBTH-HHHHHHHHHHH
T ss_pred HHhhcccCC---cEEEEECCCccCCccchHHHHHHHHHh---hcccccc--cCCCCceEEecCcCCCc-ccHHHHHHHHH
Confidence 456666655 4555556666 224455555555543 44 1 11 11234778888764321 47789999999
Q ss_pred hcCCCCcEEEecCc--CCHHHHHHHcCEEEecCCCCCCCccHHHHHHHhc--CCCEEEc
Q 016053 334 QKKIQDRVHFVNKT--LTVAPYLAAIDVLVQNSQAWGECFGRITIEAMAF--QLPVLVL 388 (396)
Q Consensus 334 ~~~l~~~V~~~g~~--~~~~~~~~~aDv~v~pS~~~~E~fg~~~lEAma~--G~PVI~t 388 (396)
+.|++-+..+.+.. +|+. -+..|++-+..+. . .+..+.|.|.- |+|.+..
T Consensus 169 ~~Gi~v~~~~~~~~t~~e~~-~~~~A~lniv~~~--~--~~~~~a~~L~e~~giP~~~~ 222 (398)
T PF00148_consen 169 ELGIEVNAVFPGGTTLEEIR-KAPEAALNIVLCP--E--GGPYAAEWLEERFGIPYLYF 222 (398)
T ss_dssp HTTEEEEEEEETTBCHHHHH-HGGGSSEEEESSC--C--HHHHHHHHHHHHHT-EEEEE
T ss_pred HCCCceEEEeCCCCCHHHHH-hCCcCcEEEEecc--c--hhhHHHHHHHHHhCCCeeec
Confidence 99997666665543 3432 3456666666554 1 23337777764 8998883
No 497
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=30.13 E-value=2e+02 Score=28.34 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=39.4
Q ss_pred hcCCCCcEEEecCcCCHHHHHHHcC-EEEecCCCCCCCccHHHHHHHhcCCCEEEcCCCCCCCC
Q 016053 334 QKKIQDRVHFVNKTLTVAPYLAAID-VLVQNSQAWGECFGRITIEAMAFQLPVLVLSELHPSIW 396 (396)
Q Consensus 334 ~~~l~~~V~~~g~~~~~~~~~~~aD-v~v~pS~~~~E~fg~~~lEAma~G~PVI~t~~gG~~~~ 396 (396)
++..+.+|+++..--+...++...| |+-.+|. + -.||+.||+|+++...+--+-|
T Consensus 203 ~~~~~~r~~ll~edfnpisll~~~dkvy~~ts~-----m---gfeall~~~~~~~fg~p~yagw 258 (671)
T COG3563 203 QLSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQ-----M---GFEALLCGKPLTTFGLPWYAGW 258 (671)
T ss_pred hhccCceEEEecccCChHHHHHhcceeEEeecc-----c---cHHHHhcCCceeeecchhhccc
Confidence 3445578999887656678888888 4555665 2 3799999999999876544433
No 498
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=29.98 E-value=1.7e+02 Score=22.97 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=25.4
Q ss_pred cEEEEEeccCCCC-ChHHHHHHHHHHHHhCC-CEEEEEe
Q 016053 75 KLVLLVSHELSLS-GGPLLLMELAFLLRGVG-TKVNWIT 111 (396)
Q Consensus 75 ~kIl~v~~~~~~g-G~~~~~~~l~~~L~~~G-~~V~vi~ 111 (396)
||+.++....+.| -......++++++.++| ++|.++.
T Consensus 1 m~~~Ivvt~ppYg~q~a~~A~~fA~all~~gh~~v~iFl 39 (126)
T COG1553 1 MKYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLFL 39 (126)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 3555555544443 22378899999999985 8888887
No 499
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=29.93 E-value=1.2e+02 Score=27.29 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=32.8
Q ss_pred ccEEEEEeccCCCCChHHHHHHHHHHHHhCCCEEEEEecc
Q 016053 74 SKLVLLVSHELSLSGGPLLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 74 ~~kIl~v~~~~~~gG~~~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
.++++.+++.....|-.....+||.+|++.|.+|-++-.+
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD 95 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDAD 95 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 3567777766666677799999999999999999999744
No 500
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=29.92 E-value=1.2e+02 Score=26.73 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=25.8
Q ss_pred EEEEEeccCCCCChH--HHHHHHHHHHHhCCCEEEEEecc
Q 016053 76 LVLLVSHELSLSGGP--LLLMELAFLLRGVGTKVNWITIQ 113 (396)
Q Consensus 76 kIl~v~~~~~~gG~~--~~~~~l~~~L~~~G~~V~vi~~~ 113 (396)
+|..+.+ .-||.. ....+|+.+|.++|+.|.++-.+
T Consensus 2 ~iI~v~n--~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 39 (231)
T PRK13849 2 KLLTFCS--FKGGAGKTTALMGLCAALASDGKRVALFEAD 39 (231)
T ss_pred eEEEEEC--CCCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3444442 335554 88899999999999999988743
Done!