Query 016055
Match_columns 396
No_of_seqs 486 out of 1332
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 07:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.2E-45 1.1E-49 339.0 32.2 379 4-395 63-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.1E-35 3.9E-40 272.0 14.6 341 5-373 71-430 (451)
3 3o7q_A L-fucose-proton symport 100.0 4.2E-32 1.5E-36 247.4 25.9 310 5-365 70-421 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 9.6E-32 3.3E-36 248.7 25.3 372 5-383 63-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 3E-31 1E-35 236.8 5.6 315 5-369 44-368 (375)
6 2xut_A Proton/peptide symporte 99.9 2.3E-27 7.8E-32 221.1 15.7 126 5-130 63-197 (524)
7 2cfq_A Lactose permease; trans 99.9 3.3E-29 1.1E-33 226.4 -2.8 337 5-383 52-406 (417)
8 3o7q_A L-fucose-proton symport 99.5 3.3E-13 1.1E-17 122.5 12.4 134 209-351 41-177 (438)
9 2gfp_A EMRD, multidrug resista 99.4 3.9E-13 1.3E-17 119.4 11.1 161 210-382 16-180 (375)
10 1pw4_A Glycerol-3-phosphate tr 99.4 5.1E-13 1.8E-17 121.7 10.4 176 197-381 31-211 (451)
11 4aps_A DI-OR tripeptide H+ sym 99.3 2.5E-12 8.6E-17 118.5 9.8 136 224-371 49-191 (491)
12 2xut_A Proton/peptide symporte 99.3 2.3E-11 7.8E-16 113.0 13.3 144 217-371 36-193 (524)
13 2cfq_A Lactose permease; trans 99.2 2.2E-11 7.6E-16 109.6 6.9 126 10-135 273-404 (417)
14 4gc0_A D-xylose-proton symport 99.1 6.4E-10 2.2E-14 102.3 12.3 122 231-352 60-187 (491)
15 2g9p_A Antimicrobial peptide l 78.7 0.92 3.2E-05 20.5 1.1 14 15-28 2-15 (26)
16 2fyu_K Ubiquinol-cytochrome C 23.6 1E+02 0.0035 18.0 3.3 37 77-113 5-41 (56)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.2e-45 Score=339.04 Aligned_cols=379 Identities=29% Similarity=0.522 Sum_probs=297.2
Q ss_pred cccchhhhhhHHHHHhhhhchhhhHHhhHHHHHHHHHHHHH------------------hhchhhHHHHHHHHHHhhhhh
Q 016055 4 SFHSDLLSNVCFFIFWLPCALWKQTMGFSDIVCIIGWVIIV------------------FSKAAWWLDLGRLLVGYGMGL 65 (396)
Q Consensus 4 ~~~~~~~~~~~~~G~l~dr~Grk~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~ 65 (396)
++..|.+++.+++|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|++.|+
T Consensus 63 ~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~ 142 (491)
T 4gc0_A 63 SALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGL 142 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999998 478999999999999999999
Q ss_pred cccccceeeecccCCCcchhHHHHHHHHHHHHHHHHHHHhhhh------------hHHHHHHHhhHHHHHHHHHHhccCC
Q 016055 66 LSYVVPVYIAEITPKNLRGGFTTVHQLMICIGVSMTYLIGAFL------------NWRILALIGTIPCLVQLIGLCFIPE 133 (396)
Q Consensus 66 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l------------~wr~~f~~~~~~~~~~~~~~~~~~e 133 (396)
..+...++++|+.|+++|++..++.+.+..+|.++++.++... +||+.+.+..++.++..+..+++||
T Consensus 143 ~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 222 (491)
T 4gc0_A 143 ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPE 222 (491)
T ss_dssp HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCC
T ss_pred HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCC
Confidence 9999999999999999999999999999999999998887654 5999999999998888889999999
Q ss_pred ChhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHhhhhhhhhHHHHHHHHHHHHHhcchhhh
Q 016055 134 SPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGI 213 (396)
Q Consensus 134 ~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (396)
||+|+..+++.|++++.+++...++...++..+..+. .+. .++....... ...++.........+.+....+..
T Consensus 223 Sp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 296 (491)
T 4gc0_A 223 SPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHS-LDH--GRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVV 296 (491)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHH
T ss_pred ChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHH-HHh--hhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999998888765433222111111111 111 1111111111 222344555566666677778888
Q ss_pred HHhHHHHHHHcCCCch---hHHHHHHHHHHHHhhHHHHHHhhcCCcceeeecchHHHHHHHHHHHHHHHHhhhhcccchh
Q 016055 214 AFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATP 290 (396)
Q Consensus 214 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (396)
.+|.+.+.+..+.+.. ......++..+++.++.+++.||+|||+.+..+.....++.+.+....... ...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------~~~ 369 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APG 369 (491)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT-------CCH
T ss_pred HhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc-------cch
Confidence 8899998888777654 445666788889999999999999999998888877777766665432211 233
Q ss_pred hHHHHHHHHHHHHhhccccchhhhhhcccCCcCcchhhhHHHHHHHHHHHHHHHHHhHHHHH-------hcccchhHHHH
Q 016055 291 FLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-------WSSTGTFFAFS 363 (396)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-------~~~~~~~~~~~ 363 (396)
...+....++...+..+..|+.+.+.+|.+|++.|+++.|+.+..+++++++++.+.+.+.+ .+....+++++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~ 449 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG 449 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 44455555556666777888889999999999999999999999999999999998877644 23445677888
Q ss_pred HHHHhhHhheeeecCCCCCCChHHHHhhcCCC
Q 016055 364 AICSLTVLFVAKLVPETKGRTLEEIQASMNPF 395 (396)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (396)
++.++..++.++++||||+|+.||+++.+|+.
T Consensus 450 ~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 450 CMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp HHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred HHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 88888888888889999999999999887653
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.1e-35 Score=272.04 Aligned_cols=341 Identities=14% Similarity=0.093 Sum_probs=241.0
Q ss_pred ccchhhhhhHHHHHhhhhchhhhHHhhHHHHHHHHHHHHHh----hchhhHHHHHHHHHHhhhhhcccccceeeecccCC
Q 016055 5 FHSDLLSNVCFFIFWLPCALWKQTMGFSDIVCIIGWVIIVF----SKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPK 80 (396)
Q Consensus 5 ~~~~~~~~~~~~G~l~dr~Grk~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 80 (396)
+..+..++.+++|+++||+|||+++..+.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+
T Consensus 71 ~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~ 150 (451)
T 1pw4_A 71 ISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ 150 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc
Confidence 44566778888999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhh----h-HHHHHHHhhHHHHHHH-HHHhccCCChhHHhhcCChHHHHHHHHHH
Q 016055 81 NLRGGFTTVHQLMICIGVSMTYLIGAFL----N-WRILALIGTIPCLVQL-IGLCFIPESPRWLAKTGKGIESEAALQRL 154 (396)
Q Consensus 81 ~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~-wr~~f~~~~~~~~~~~-~~~~~~~e~p~~l~~~~~~~~~~~~~~~~ 154 (396)
++|++++++.+.+.++|.+++|.+++.+ + ||+.|++.+++.++.. +..+.+||+|++...++++++.
T Consensus 151 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 223 (451)
T 1pw4_A 151 KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK------- 223 (451)
T ss_dssp THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-------
Confidence 9999999999999999999999999875 7 9999999888776654 4556788888643221111100
Q ss_pred hCCCcchHHHHHHHHHHHHHHhhccchhHHHhhhhhhhhHHHHHHHHHHHHHhcchhhhHHhHHHHHHH-cCCCch---h
Q 016055 155 RGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSGS---I 230 (396)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~ 230 (396)
+ +.+++. ++..++....++...++.++++..+...+..++... .......+.|.+.++ .+.+.. .
T Consensus 224 ---~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~ 292 (451)
T 1pw4_A 224 ---N-DYPDDY---NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSW 292 (451)
T ss_dssp ---C-C----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHH
T ss_pred ---c-cccccc---hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 0 000000 000000011111124556666555444443333333 344556677777666 577765 5
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhc--CCcceeeecchHHH-HHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHhhcc
Q 016055 231 GMIAMVVIQIPMTLLGVLLMDKS--GRRPLLLVSAAGTC-LGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLG 307 (396)
Q Consensus 231 ~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (396)
......++.+++.++.+++.||+ +||+.+..+..+.. ++.+++... +..+........+..+.+...
T Consensus 293 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 293 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----------PAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----------CTTCHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----------cccCHHHHHHHHHHHHHHHhc
Confidence 56666788999999999999999 99887766655544 333333221 012333344444444555555
Q ss_pred ccchhhhhhcccCCcCcchhhhHHHHHHHHH-HHHHHHHHhHHHHHh-cccchhHHHHHHHHhhHhhe
Q 016055 308 MGGIPWVIMSEVFPINMKGSAGSLVTLVSWL-GSWIISFTFNFLMKW-SSTGTFFAFSAICSLTVLFV 373 (396)
Q Consensus 308 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 373 (396)
..+....+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.|. ++...++..+++.++..++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 5666678999999999999999999999999 999999999999994 54555555555555544443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=4.2e-32 Score=247.38 Aligned_cols=310 Identities=11% Similarity=0.050 Sum_probs=229.0
Q ss_pred ccchhhhhhHHHHHhhhhchhhhHHhhHHHHHHHHHHHH---HhhchhhHHHHHHHHHHhhhhhcccccceeeecccCCC
Q 016055 5 FHSDLLSNVCFFIFWLPCALWKQTMGFSDIVCIIGWVII---VFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKN 81 (396)
Q Consensus 5 ~~~~~~~~~~~~G~l~dr~Grk~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 81 (396)
+..+.+++.+++|+++||+|||+++..+.++.+++.+++ +++++++.+++.|+++|++.+...+...+++.|++|++
T Consensus 70 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 149 (438)
T 3o7q_A 70 FYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES 149 (438)
T ss_dssp HHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST
T ss_pred HHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch
Confidence 445667788889999999999999999999999999999 88999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhh------------------------------HHHHHHHhhHHHHHHHHHHhc-
Q 016055 82 LRGGFTTVHQLMICIGVSMTYLIGAFLN------------------------------WRILALIGTIPCLVQLIGLCF- 130 (396)
Q Consensus 82 ~r~~~~~~~~~~~~lG~~~~~~l~~~l~------------------------------wr~~f~~~~~~~~~~~~~~~~- 130 (396)
+|++++++.+.+.++|.++++.+++.+. ||+.|++.+...++..+..++
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988772 999998877665555443333
Q ss_pred -cCCChhHHhhcCChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHhhccchhHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 016055 131 -IPESPRWLAKTGKGIESEAALQRLRGADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGG 209 (396)
Q Consensus 131 -~~e~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (396)
.||+++.. ++++ +++..+.++++.++++..+.......+....
T Consensus 230 ~~p~~~~~~---~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 273 (438)
T 3o7q_A 230 KFPALQSDN---HSDA-----------------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGA---- 273 (438)
T ss_dssp CCCCCTTTC---CCCS-----------------------------STTSHHHHHHHHTTCSHHHHHHHHHHHHHHH----
T ss_pred cCCcccccc---cccc-----------------------------cccchhhhHHHHHhChHHHHHHHHHHHHHHH----
Confidence 46554210 0000 0111223456677776666555544443332
Q ss_pred hhhhHHhHHHH-HHHc-CCCch---hHHHHHHHHHHHHhhHHHHHHhhcCCcceeeecchHHHHHHHHHHHHHHHHhhhh
Q 016055 210 VNGIAFYASSI-FISA-GFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQ 284 (396)
Q Consensus 210 ~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (396)
......+.+.+ .++. +.+.. .......++.+++.++.+++.||++||+.+..+..+..++.+++..
T Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~--------- 344 (438)
T 3o7q_A 274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF--------- 344 (438)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---------
Confidence 34445566666 6555 77765 5556667888999999999999999999888777777666555544
Q ss_pred cccchhhHHHHHHHHHHHHhhccccchhhhhhcccCCcCcchhhhHHHHHHHHHHHHHHHHHhHHHHHh-c-ccchhHHH
Q 016055 285 WIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKW-S-STGTFFAF 362 (396)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~-~-~~~~~~~~ 362 (396)
.+........ .+.+.+.....|..+++..|.+|++ ++++.++.. .+.+|..++|.+.|.+.|. + ....+.+.
T Consensus 345 ---~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 418 (438)
T 3o7q_A 345 ---AGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIP 418 (438)
T ss_dssp ---CCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHH
T ss_pred ---cCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 2222223333 3444555566678888889999976 888888777 6779999999999999994 4 44455544
Q ss_pred HHH
Q 016055 363 SAI 365 (396)
Q Consensus 363 ~~~ 365 (396)
+.+
T Consensus 419 ~~~ 421 (438)
T 3o7q_A 419 ALC 421 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=9.6e-32 Score=248.66 Aligned_cols=372 Identities=13% Similarity=0.023 Sum_probs=230.9
Q ss_pred ccchhhhhhHHHHHhhhh-chhhhHHhhHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhhhhcccccceeeecccCCCc-
Q 016055 5 FHSDLLSNVCFFIFWLPC-ALWKQTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL- 82 (396)
Q Consensus 5 ~~~~~~~~~~~~G~l~dr-~Grk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~- 82 (396)
+..+..++.+++|+++|| +|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+...+++.|++|+++
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 142 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc
Confidence 445667788899999999 899999999999999999999999999999999999999999999999999999999988
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHhhHHHHHHHHHHhcc-CCCh----hHHhhcCChHHHHHHHH
Q 016055 83 -RGGFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCFI-PESP----RWLAKTGKGIESEAALQ 152 (396)
Q Consensus 83 -r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~-~e~p----~~l~~~~~~~~~~~~~~ 152 (396)
|+.+.++.+.+.++|..++|.+++.+ +||+.|++.++..++..+..... |+.. +....+.+.++.++..+
T Consensus 143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
T 4aps_A 143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence 77788889999999999999999887 89999999877666554443322 2111 00011112222222222
Q ss_pred H----------------HhC-CCcchHHHHHHHHHHH------HHHhhccchhHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 016055 153 R----------------LRG-ADADISEEAAEIREYT------ETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGG 209 (396)
Q Consensus 153 ~----------------~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (396)
+ ..+ .+.+............ ....++++.+..+..+..............+..
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 298 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAI---- 298 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1 111 1111111100000000 000000000000110111111222222222222
Q ss_pred hhhhHHhHHHHHHH-cCCC---chhHHHHHHHHHHHHhhHHHHHHhhcCCcceee-----ecchHHHHHHHHHHHHHHHH
Q 016055 210 VNGIAFYASSIFIS-AGFS---GSIGMIAMVVIQIPMTLLGVLLMDKSGRRPLLL-----VSAAGTCLGCLLAALSFLFQ 280 (396)
Q Consensus 210 ~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 280 (396)
+.....+.+.+.++ .+.+ .........+..+++.++.+++.||++||+... .+..+.+++...+.......
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4aps_A 299 EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY 378 (491)
T ss_dssp HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333444444443 3333 446667777888888999999999999987765 55555555554444322111
Q ss_pred hhhhcccchhhHHHHHHHHHHHHhhccccchhhhhhcccCCcCcchhhhHHHHHHHHHHHHHHHHHhHHHHHhcccchhH
Q 016055 281 DLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFF 360 (396)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~ 360 (396)
.. ....+........++.+.......+..+.++.|.+|++.|+++.|+.+...++|..++|.+.+.+.+.++...+.
T Consensus 379 ~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~ 455 (491)
T 4aps_A 379 GT---SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFS 455 (491)
T ss_dssp CC---CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHH
T ss_pred CC---CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 00 011233344444455555555667778899999999999999999999999999999999999988877666777
Q ss_pred HHHHHHHhhHhheeeecCCCCCC
Q 016055 361 AFSAICSLTVLFVAKLVPETKGR 383 (396)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~ 383 (396)
..+.+..+..++.+...++.+++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 456 YFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666666555555554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=3e-31 Score=236.77 Aligned_cols=315 Identities=13% Similarity=0.039 Sum_probs=220.5
Q ss_pred ccchhhhhhHHHHHhhhhchhhhHHhhHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhhhhcccccceeeecccCCCcch
Q 016055 5 FHSDLLSNVCFFIFWLPCALWKQTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRG 84 (396)
Q Consensus 5 ~~~~~~~~~~~~G~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 84 (396)
+..+..++.++.|+++||+|||+++..+.++.+++.++.++++|++.+++.|+++|++.+...+...+++.|++|+++|+
T Consensus 44 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (375)
T 2gfp_A 44 YLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR 123 (375)
T ss_dssp HHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH
Confidence 34556677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHhhHHHHHHHH-HHhccCCChhHHhhcCChHHHHHHHHHHhCCCc
Q 016055 85 GFTTVHQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLI-GLCFIPESPRWLAKTGKGIESEAALQRLRGADA 159 (396)
Q Consensus 85 ~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~l~~~~~~~~~~~~~~~~~~~~~ 159 (396)
+++++.+.+.++|..++|.+++.+ +||+.|++.++..++..+ ..+.+||+|++.. +
T Consensus 124 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------- 184 (375)
T 2gfp_A 124 HANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA---P---------------- 184 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC---C----------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc---c----------------
Confidence 999999999999999999999887 899999998887776655 4556788764210 0
Q ss_pred chHHHHHHHHHHHHHHhhccchhHHHhhhhhhhhHHHHHHHHHHHHHhcchhhhHHhHHHHHHH-cCCCch---hHHHHH
Q 016055 160 DISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFIS-AGFSGS---IGMIAM 235 (396)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~ 235 (396)
+++.+.++++.+|++..+.......+..... .....+.|.+.++ .+.++. ......
T Consensus 185 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 244 (375)
T 2gfp_A 185 ----------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGI----AAFEACSGVLMGAVLGLSSMTVSILFILP 244 (375)
T ss_dssp ----------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCSCSSHHHHHHHHHHHHHHHHTH
T ss_pred ----------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 0112234456666666555555444444332 2233333333332 344433 455556
Q ss_pred HHHHHHHhhHHHHHHhhcCCcceeeecchH-HHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHhhccccchhhh
Q 016055 236 VVIQIPMTLLGVLLMDKSGRRPLLLVSAAG-TCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWV 314 (396)
Q Consensus 236 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (396)
.++.+++.++.+++.||.+++. ..+... ...+...+..... . ..+........++.+.......+....
T Consensus 245 ~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~ 314 (375)
T 2gfp_A 245 IPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF-G-------VMNVWTLLVPAALFFFGAGMLFPLATS 314 (375)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH-H-------HHHHHHHHHHHHHHHHHHHHTSSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh-c-------cccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6778888888888888887621 122222 1111111111100 0 112233333333444445556777789
Q ss_pred hhcccCCcCcchhhhHHHHHHHHHHHHHHHHHhHHHHHhcccchhHHHHHHHHhh
Q 016055 315 IMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMKWSSTGTFFAFSAICSLT 369 (396)
Q Consensus 315 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 369 (396)
+..|..| ++|+++.|+.+...++|..++|.+.+.+.+.+.....+....+..+.
T Consensus 315 ~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 368 (375)
T 2gfp_A 315 GAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLI 368 (375)
T ss_dssp HHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 9999998 79999999999999999999999999998855544444444444433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=2.3e-27 Score=221.09 Aligned_cols=126 Identities=11% Similarity=0.060 Sum_probs=112.0
Q ss_pred ccchhhhhhHHHHHhhhhc-hhhhHHhhHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHhhhhhcccccceeeecccCCCc
Q 016055 5 FHSDLLSNVCFFIFWLPCA-LWKQTMGFSDIVCIIGWVIIVFSK-AAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNL 82 (396)
Q Consensus 5 ~~~~~~~~~~~~G~l~dr~-Grk~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 82 (396)
+..+..++.+++|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.|++|+++
T Consensus 63 ~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 63 FVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 4456677888899999999 999999999999999999999999 99999999999999999999999999999999999
Q ss_pred chhHHHH---HHHHHHHHHHHHHHHhhhh----hHHHHHHHhhHHHHHHHHHHhc
Q 016055 83 RGGFTTV---HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIGLCF 130 (396)
Q Consensus 83 r~~~~~~---~~~~~~lG~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~ 130 (396)
|+++.+. .+.+.++|..++|.+++.+ +||+.|++.++..++..+..+.
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9877666 8899999999999998877 8999999988876666554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=3.3e-29 Score=226.39 Aligned_cols=337 Identities=12% Similarity=0.056 Sum_probs=194.0
Q ss_pred ccchhhhhhHHHHHhhhhchhhhHHhhHHHHHHHHHH---HHHhhchh-hHHHHHHHHHHhhhhhcccccceeeecccCC
Q 016055 5 FHSDLLSNVCFFIFWLPCALWKQTMGFSDIVCIIGWV---IIVFSKAA-WWLDLGRLLVGYGMGLLSYVVPVYIAEITPK 80 (396)
Q Consensus 5 ~~~~~~~~~~~~G~l~dr~Grk~~~~~~~~~~~~~~~---~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 80 (396)
+..+..++.+++|+++||+|||++++.+..+.+++.. ...+++.. ..+...+++.|++.+...+.....+.++.++
T Consensus 52 ~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 131 (417)
T 2cfq_A 52 ISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK 131 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3456677888999999999999999998887765321 11222221 1234556666666555554444445555443
Q ss_pred --CcchhHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCChHHHHHHHHHHh
Q 016055 81 --NLRGGFTTVHQLMICIGVSMTYLIGAFL---NWRILALIGTIPCLVQLIGLCFIPESPRWLAKTGKGIESEAALQRLR 155 (396)
Q Consensus 81 --~~r~~~~~~~~~~~~lG~~~~~~l~~~l---~wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~~~~~~~~~~~ 155 (396)
++|+...+....+.++|..++|.+++.+ +||+.|++.++..++..+..+..+|+|+.. .++++.+
T Consensus 132 ~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------- 201 (417)
T 2cfq_A 132 VSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS---ATVANAV------- 201 (417)
T ss_dssp HHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS---SCSSSSS-------
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcccccc---ccccccc-------
Confidence 3456666777677788888888888776 799999987776555555555544433110 0000000
Q ss_pred CCCcchHHHHHHHHHHHHHHhhccchhHHHhhhhhhhhHHHHHHHHHHHHHhcchhhhHHhHHHHHHHc-CC---Cch--
Q 016055 156 GADADISEEAAEIREYTETLERLSEGGILELFQRKYAHSLIVGVGLMVLQQFGGVNGIAFYASSIFISA-GF---SGS-- 229 (396)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~-- 229 (396)
+.+ .++.+..++++.++++..+............ +.....+.|.++.+. +. +..
T Consensus 202 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (417)
T 2cfq_A 202 GAN----------------HSAFSLKLALELFRQPKLWFLSLYVIGVSCT----YDVFDQQFANFFTSFFATGEQGTRVF 261 (417)
T ss_dssp SSC----------------CCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTSSSHHHHTHHH
T ss_pred ccc----------------cccccHHHHHHHhcCCchhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCChhHH
Confidence 000 0001112344566665554443332222221 122222234333322 21 121
Q ss_pred -hHHHHHHHHHHHHhhHHHHHHhhcCCcceeeecchHHHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHhhccc
Q 016055 230 -IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGM 308 (396)
Q Consensus 230 -~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (396)
.......+..+++.++.++++||++||+.+..+..+.++....+.. ..+...+.....+.+......
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~~ 329 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------------ATSALEVVILKTLHMFEVPFL 329 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT------------CCSHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH------------hccHHHHHHHHHHHHHHHHHH
Confidence 3344445677888999999999999999877666555554433322 112222222222222222223
Q ss_pred cchhhhhhcccCCcCcchhhhHHH-HHHHHHHHHHHHHHhHHHHH-hcccchhHHHHHHHHhhHhheeeecCCCCCC
Q 016055 309 GGIPWVIMSEVFPINMKGSAGSLV-TLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVLFVAKLVPETKGR 383 (396)
Q Consensus 309 ~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (396)
.+..+.++.|.+|++.|+++.+.. +....+|+.++|.+.|.+.+ .++...+...+++..+..++.....+|+++.
T Consensus 330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 334568999999999999999994 78888999999999999988 4444555555665555555544455554443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.46 E-value=3.3e-13 Score=122.47 Aligned_cols=134 Identities=10% Similarity=-0.061 Sum_probs=108.1
Q ss_pred chhhhHHhHHHHHHHcCCCch---hHHHHHHHHHHHHhhHHHHHHhhcCCcceeeecchHHHHHHHHHHHHHHHHhhhhc
Q 016055 209 GVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQW 285 (396)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (396)
.........|.+.++.+.+.. .......++..++.++.|+++||+|||+.+..+..+.+++.++......
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------- 113 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE------- 113 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-------
Confidence 345666677888888888876 5556666788899999999999999999999999888888877732211
Q ss_pred ccchhhHHHHHHHHHHHHhhccccchhhhhhcccCCcCcchhhhHHHHHHHHHHHHHHHHHhHHHH
Q 016055 286 IKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLM 351 (396)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~ 351 (396)
.++...+....++.+.......+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 114 --~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 --IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred --cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666777788899999999999999999999999999999999999988
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.44 E-value=3.9e-13 Score=119.36 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=121.7
Q ss_pred hhhhHHhHHHHHHHcCCCch---hHHHHHHHHHHHHhhHHHHHHhhcCCcceeeecchHHHHHHHHHHHHHHHHhhhhcc
Q 016055 210 VNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWI 286 (396)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (396)
........|.+.++.+.+.. .......+...++.++.|+++||+|||+.+..+.....++.......
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 85 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---------- 85 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence 34444556667777787776 55566667888999999999999999999998888888887777652
Q ss_pred cchhhHHHHHHHHHHHHhhccccchhhhhhcccCCcCcchhhhHHHHHHHHHHHHHHHHHhHHHHH-hcccchhHHHHHH
Q 016055 287 KATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAI 365 (396)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~ 365 (396)
++...+....++.+.......+....++.|.+|+++|+++++..+....+|..++|.+.+.+.+ .++...+.+.+..
T Consensus 86 --~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 86 --SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 2344444455555666666677778999999999999999999999999999999999998887 4555566666666
Q ss_pred HHhhHhheeeecCCCCC
Q 016055 366 CSLTVLFVAKLVPETKG 382 (396)
Q Consensus 366 ~~~~~~~~~~~~~~~~~ 382 (396)
..+..+...+..||+++
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHCcccCC
Confidence 65555545556666543
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=5.1e-13 Score=121.66 Aligned_cols=176 Identities=13% Similarity=0.064 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcchhhhHHhHHHHHHHcCCCch---hHHHHHHHHHHHHhhHHHHHHhhcCCcceeeecchHHHHHHHHH
Q 016055 197 VGVGLMVLQQFGGVNGIAFYASSIFISAGFSGS---IGMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLA 273 (396)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 273 (396)
....+..+.............|.+.++. .+.. .......++..++.++.|+++||+|||+.+..+..+.+++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 109 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM 109 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 3333333333333445556667776666 5554 66666778889999999999999999999998888888887777
Q ss_pred HHHHHHHhhhhcccchhhHHHHHHHHHHHHhhccccchhhhhhcccCCcCcchhhhHHHHHHHHHHHHHHHHHhHHHHH-
Q 016055 274 ALSFLFQDLQQWIKATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK- 352 (396)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~- 352 (396)
.+.... . .+ ...+....++.+.+.....+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+
T Consensus 110 ~~~~~~-~------~~-~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 110 GFVPWA-T------SS-IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHCHHH-H------SS-SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred Hhhhhc-c------cc-HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 652110 0 22 22333444555666666677888999999999999999999999999999999999998777
Q ss_pred hc-ccchhHHHHHHHHhhHhheeeecCCCC
Q 016055 353 WS-STGTFFAFSAICSLTVLFVAKLVPETK 381 (396)
Q Consensus 353 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (396)
.+ +...+++.+.+..+..++..+..||++
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 55 666777777666665555555555543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.34 E-value=2.5e-12 Score=118.49 Aligned_cols=136 Identities=14% Similarity=0.082 Sum_probs=103.5
Q ss_pred cCCCch---hHHHHHHHHHHHHhhHHHHHHhh-cCCcceeeecchHHHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Q 016055 224 AGFSGS---IGMIAMVVIQIPMTLLGVLLMDK-SGRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWIKATPFLALVGVLV 299 (396)
Q Consensus 224 ~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (396)
.+.+.. .......++..++.++.|+++|| +|||+.+..+..+..++.++... .++...+....+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 116 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL------------PFGASALFGSII 116 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS------------CCSTTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH------------hhhHHHHHHHHH
Confidence 677765 55666678889999999999999 89999999888888887776664 333444444455
Q ss_pred HHHHhhccccchhhhhhcccCCcCc--chhhhHHHHHHHHHHHHHHHHHhHHHHH-hcccchhHHHHHHHHhhHh
Q 016055 300 YTGSFSLGMGGIPWVIMSEVFPINM--KGSAGSLVTLVSWLGSWIISFTFNFLMK-WSSTGTFFAFSAICSLTVL 371 (396)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 371 (396)
+.+.+.....+...+++.|.+|+++ |+.+.+..+....+|..++|.+.+.+.+ .++...+++.+....+..+
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5566666677788899999999988 7778888999999999999999999988 5555555555444444333
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.29 E-value=2.3e-11 Score=113.04 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=105.3
Q ss_pred HHHHHHHcC------CCch---hHHHHHHHHHHHHhhHHHHHHhhc-CCcceeeecchHHHHHHHHHHHHHHHHhhhhcc
Q 016055 217 ASSIFISAG------FSGS---IGMIAMVVIQIPMTLLGVLLMDKS-GRRPLLLVSAAGTCLGCLLAALSFLFQDLQQWI 286 (396)
Q Consensus 217 ~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (396)
.+++.++.+ .+.. .......++..++.++.|+++||+ |||+.+..+..+.+++.++..+.
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---------- 105 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---------- 105 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----------
Confidence 334445566 6655 556666788889999999999999 99999888888877777766652
Q ss_pred cchhhHHHHHHHHHHHHhhccccchhhhhhcccCCcCcchhhhHH---HHHHHHHHHHHHHHHhHHHHH-hcccchhHHH
Q 016055 287 KATPFLALVGVLVYTGSFSLGMGGIPWVIMSEVFPINMKGSAGSL---VTLVSWLGSWIISFTFNFLMK-WSSTGTFFAF 362 (396)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~~~ 362 (396)
..+...+....++.+.......+...+++.|.+|+++|++..+. .+...++|..++|.+.+.+.+ .++...+.+.
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 21344444555556666666778888999999999999876666 888899999999999999988 4555555555
Q ss_pred HHHHHhhHh
Q 016055 363 SAICSLTVL 371 (396)
Q Consensus 363 ~~~~~~~~~ 371 (396)
+.+.++..+
T Consensus 185 ~~~~~~~~~ 193 (524)
T 2xut_A 185 GVLMFVATV 193 (524)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444333
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.18 E-value=2.2e-11 Score=109.60 Aligned_cols=126 Identities=10% Similarity=0.015 Sum_probs=103.5
Q ss_pred hhhhHHHHHhhhhchhhhHHhhHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhhhhcccccceeeecccCCCcchhHHHH
Q 016055 10 LSNVCFFIFWLPCALWKQTMGFSDIVCIIGWVIIVFSKAAWWLDLGRLLVGYGMGLLSYVVPVYIAEITPKNLRGGFTTV 89 (396)
Q Consensus 10 ~~~~~~~G~l~dr~Grk~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 89 (396)
+++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+|++.|+.+.++
T Consensus 273 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 352 (417)
T 2cfq_A 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 44567899999999999999999988888877777788888888888888888777777778899999999999999998
Q ss_pred -HHHHHHHHHHHHHHHhhhh----hHHHHHHHhhHHHHHHHHH-HhccCCCh
Q 016055 90 -HQLMICIGVSMTYLIGAFL----NWRILALIGTIPCLVQLIG-LCFIPESP 135 (396)
Q Consensus 90 -~~~~~~lG~~~~~~l~~~l----~wr~~f~~~~~~~~~~~~~-~~~~~e~p 135 (396)
++....+|..++|.+++.+ +++..|.+.++..++..+. ....||.+
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 4778889999999988876 7888888888777776554 44456654
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.09 E-value=6.4e-10 Score=102.34 Aligned_cols=122 Identities=16% Similarity=0.055 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhcCCcceeeecchHHHHHHHHHHHHHHHHhhh------hcccchhhHHHHHHHHHHHHh
Q 016055 231 GMIAMVVIQIPMTLLGVLLMDKSGRRPLLLVSAAGTCLGCLLAALSFLFQDLQ------QWIKATPFLALVGVLVYTGSF 304 (396)
Q Consensus 231 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 304 (396)
......++.++|.++.|+++||+|||+.+.++.++..++.++.++........ ...-..+...++..-++.+..
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g 139 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIG 139 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445678899999999999999999999999888888877765310000000 000033455666666777777
Q ss_pred hccccchhhhhhcccCCcCcchhhhHHHHHHHHHHHHHHHHHhHHHHH
Q 016055 305 SLGMGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISFTFNFLMK 352 (396)
Q Consensus 305 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~~~~ 352 (396)
.++..+....++.|..|++.|+...++.+.....|...++.+.....+
T Consensus 140 ~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 140 VGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 777788888999999999999999999999999998888887766654
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=78.69 E-value=0.92 Score=20.50 Aligned_cols=14 Identities=14% Similarity=-0.140 Sum_probs=11.7
Q ss_pred HHHHhhhhchhhhH
Q 016055 15 FFIFWLPCALWKQT 28 (396)
Q Consensus 15 ~~G~l~dr~Grk~~ 28 (396)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 37899999999865
No 16
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=23.64 E-value=1e+02 Score=18.01 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=20.5
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 016055 77 ITPKNLRGGFTTVHQLMICIGVSMTYLIGAFLNWRIL 113 (396)
Q Consensus 77 ~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l~wr~~ 113 (396)
...+++...+..+.-.....|...+-.+..+.+||..
T Consensus 5 ~~g~~~~~~~~~w~psa~~~Gaaa~v~~ly~tdwr~I 41 (56)
T 2fyu_K 5 FLGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLI 41 (56)
T ss_dssp GCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred cccHhHHHHHHHHhhhhhhhhhhhhhheeeeccHHHH
Confidence 3444555556666655555565555544444477744
Done!