Query 016056
Match_columns 396
No_of_seqs 260 out of 2123
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:23:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 1.2E-53 2.6E-58 405.9 28.7 275 122-396 6-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 4.7E-52 1E-56 406.8 34.5 304 89-396 2-306 (308)
3 PRK12895 ubiA prenyltransferas 100.0 2.5E-36 5.5E-41 292.1 30.9 263 99-383 2-268 (286)
4 PRK13106 ubiA prenyltransferas 100.0 1.2E-35 2.5E-40 289.6 31.1 271 96-383 11-283 (300)
5 TIGR01475 ubiA_other putative 100.0 2.6E-35 5.7E-40 285.8 30.9 260 99-379 1-263 (282)
6 PRK12874 ubiA prenyltransferas 100.0 8.5E-35 1.8E-39 283.0 32.2 265 94-379 2-271 (291)
7 PRK12870 ubiA 4-hydroxybenzoat 100.0 5.4E-35 1.2E-39 284.4 28.9 265 96-384 5-277 (290)
8 PRK12888 ubiA prenyltransferas 100.0 1.8E-34 4E-39 279.7 30.7 261 99-380 1-266 (284)
9 PRK12886 ubiA prenyltransferas 100.0 4E-34 8.6E-39 278.4 32.1 265 96-383 4-272 (291)
10 PLN02809 4-hydroxybenzoate non 100.0 3.5E-34 7.7E-39 278.2 31.0 263 97-382 3-273 (289)
11 PLN00012 chlorophyll synthetas 100.0 1.2E-33 2.6E-38 282.6 34.7 220 95-329 80-309 (375)
12 PRK12884 ubiA prenyltransferas 100.0 5.8E-34 1.3E-38 275.9 31.1 261 98-382 2-263 (279)
13 PRK07566 bacteriochlorophyll/c 100.0 4.3E-34 9.3E-39 281.1 30.1 225 96-332 23-249 (314)
14 TIGR01476 chlor_syn_BchG bacte 100.0 3.2E-34 7E-39 278.3 28.0 220 101-333 1-222 (283)
15 PRK09573 (S)-2,3-di-O-geranylg 100.0 9.2E-34 2E-38 274.6 30.9 255 99-377 2-257 (279)
16 PRK12878 ubiA 4-hydroxybenzoat 100.0 1.6E-33 3.5E-38 276.6 32.3 264 94-379 24-295 (314)
17 PRK12847 ubiA 4-hydroxybenzoat 100.0 2.5E-33 5.4E-38 272.4 33.2 266 96-384 3-274 (285)
18 PRK12848 ubiA 4-hydroxybenzoat 100.0 1.5E-33 3.1E-38 273.6 30.2 264 97-384 2-271 (282)
19 PRK12882 ubiA prenyltransferas 100.0 1.1E-33 2.4E-38 273.7 29.0 258 99-378 3-261 (276)
20 PRK12873 ubiA prenyltransferas 100.0 1.6E-33 3.6E-38 272.9 29.2 268 98-387 5-284 (294)
21 PRK12876 ubiA prenyltransferas 100.0 5E-33 1.1E-37 269.5 31.9 280 98-396 2-299 (300)
22 PRK12392 bacteriochlorophyll c 100.0 4.1E-33 8.8E-38 275.1 29.7 253 97-364 9-269 (331)
23 COG0382 UbiA 4-hydroxybenzoate 100.0 1.5E-32 3.2E-37 267.5 31.8 273 97-392 7-284 (289)
24 TIGR02056 ChlG chlorophyll syn 100.0 1.2E-32 2.6E-37 269.9 31.1 223 95-332 11-243 (306)
25 TIGR01474 ubiA_proteo 4-hydrox 100.0 4E-32 8.6E-37 263.4 31.8 256 101-378 2-262 (281)
26 PRK05951 ubiA prenyltransferas 100.0 5.4E-32 1.2E-36 264.2 31.3 266 99-379 3-277 (296)
27 PRK12869 ubiA protoheme IX far 100.0 2E-31 4.4E-36 258.2 30.1 264 99-385 1-270 (279)
28 PRK04375 protoheme IX farnesyl 100.0 4E-31 8.7E-36 258.2 30.2 265 98-384 8-278 (296)
29 PRK12883 ubiA prenyltransferas 100.0 5.5E-31 1.2E-35 255.0 30.6 205 99-324 2-206 (277)
30 PRK13595 ubiA prenyltransferas 100.0 5.4E-31 1.2E-35 253.8 29.6 260 98-388 10-275 (292)
31 PRK06080 1,4-dihydroxy-2-napht 100.0 1.4E-30 3.1E-35 254.0 31.1 230 99-343 2-239 (293)
32 PRK13362 protoheme IX farnesyl 100.0 2.8E-30 6.1E-35 252.7 30.2 206 98-321 11-219 (306)
33 TIGR01473 cyoE_ctaB protoheme 100.0 3.7E-30 8.1E-35 249.5 30.4 263 101-384 1-270 (280)
34 PRK13387 1,4-dihydroxy-2-napht 100.0 7.8E-30 1.7E-34 250.9 31.6 232 100-343 3-260 (317)
35 PRK12871 ubiA prenyltransferas 100.0 3.7E-28 8.1E-33 236.9 30.8 274 98-394 3-295 (297)
36 PRK07419 1,4-dihydroxy-2-napht 100.0 4.8E-28 1E-32 236.4 30.9 232 97-344 9-246 (304)
37 PLN02922 prenyltransferase 100.0 9.8E-28 2.1E-32 235.5 32.4 236 98-343 13-259 (315)
38 KOG1381 Para-hydroxybenzoate-p 100.0 3.4E-30 7.4E-35 239.5 13.8 280 90-390 54-339 (353)
39 TIGR00751 menA 1,4-dihydroxy-2 100.0 5E-28 1.1E-32 234.6 28.0 222 108-343 1-235 (284)
40 COG1575 MenA 1,4-dihydroxy-2-n 100.0 7.5E-27 1.6E-31 224.0 30.9 281 98-393 6-300 (303)
41 PRK13105 ubiA prenyltransferas 100.0 3.9E-27 8.4E-32 227.5 27.5 219 100-336 1-224 (282)
42 TIGR02235 menA_cyano-plnt 1,4- 100.0 1.4E-26 3.1E-31 224.6 31.1 226 103-344 2-233 (285)
43 PRK12872 ubiA prenyltransferas 100.0 5.1E-26 1.1E-30 220.9 27.2 221 98-336 2-225 (285)
44 COG0109 CyoE Polyprenyltransfe 100.0 1.8E-26 3.8E-31 220.9 22.8 267 96-391 14-290 (304)
45 PF01040 UbiA: UbiA prenyltran 99.9 6.3E-26 1.4E-30 215.5 24.5 189 114-319 3-193 (257)
46 PLN02776 prenyltransferase 99.9 3E-25 6.4E-30 218.5 29.2 261 106-391 1-267 (341)
47 PRK12875 ubiA prenyltransferas 99.9 7.5E-25 1.6E-29 212.0 29.2 218 97-336 5-229 (282)
48 PRK13591 ubiA prenyltransferas 99.9 3.7E-24 8.1E-29 207.3 25.8 177 146-338 65-245 (307)
49 PRK13592 ubiA prenyltransferas 99.9 3E-23 6.4E-28 199.4 25.3 178 140-331 47-232 (299)
50 PRK12324 phosphoribose diphosp 99.9 2.3E-20 5.1E-25 181.5 28.2 148 98-255 9-158 (295)
51 PRK08238 hypothetical protein; 99.9 4.1E-20 9E-25 191.0 26.2 189 96-305 187-377 (479)
52 KOG1380 Heme A farnesyltransfe 99.6 8E-16 1.7E-20 147.1 8.3 208 99-329 93-309 (409)
53 KOG4581 Predicted membrane pro 99.5 2.5E-14 5.3E-19 131.1 7.4 231 97-340 58-297 (359)
54 PRK13591 ubiA prenyltransferas 92.3 0.57 1.2E-05 46.2 8.1 66 157-225 197-271 (307)
55 COG1575 MenA 1,4-dihydroxy-2-n 89.5 3.4 7.5E-05 40.6 10.4 45 144-190 181-225 (303)
56 PRK07419 1,4-dihydroxy-2-napht 89.4 4.3 9.4E-05 40.0 11.3 41 150-192 185-225 (304)
57 PRK13387 1,4-dihydroxy-2-napht 88.2 2.3 5E-05 42.2 8.5 48 146-196 196-244 (317)
58 PRK12872 ubiA prenyltransferas 88.1 5.7 0.00012 38.3 11.1 34 147-180 169-203 (285)
59 PLN02922 prenyltransferase 88.1 2.5 5.5E-05 41.9 8.7 43 148-192 197-239 (315)
60 PRK13105 ubiA prenyltransferas 87.7 3.4 7.3E-05 40.4 9.1 58 146-205 167-224 (282)
61 TIGR02235 menA_cyano-plnt 1,4- 85.1 11 0.00023 36.9 11.2 45 149-195 171-215 (285)
62 PRK12875 ubiA prenyltransferas 84.0 13 0.00027 36.4 11.1 51 146-199 172-223 (282)
63 TIGR01474 ubiA_proteo 4-hydrox 83.2 13 0.00029 36.0 10.9 36 145-180 166-202 (281)
64 PRK13592 ubiA prenyltransferas 82.7 27 0.00058 34.4 12.7 43 284-327 58-103 (299)
65 PLN00012 chlorophyll synthetas 81.3 7.9 0.00017 39.4 8.8 32 149-180 262-294 (375)
66 PRK07566 bacteriochlorophyll/c 81.0 7.1 0.00015 38.6 8.2 31 150-180 200-231 (314)
67 PRK06080 1,4-dihydroxy-2-napht 80.8 7.7 0.00017 37.7 8.3 46 146-194 175-221 (293)
68 COG0382 UbiA 4-hydroxybenzoate 80.2 22 0.00049 34.5 11.4 31 284-314 59-90 (289)
69 TIGR00751 menA 1,4-dihydroxy-2 80.2 20 0.00044 34.9 11.0 44 149-194 174-217 (284)
70 PRK12884 ubiA prenyltransferas 80.1 14 0.00029 35.7 9.7 30 284-314 49-78 (279)
71 TIGR02056 ChlG chlorophyll syn 80.1 8.2 0.00018 38.0 8.3 39 149-190 193-232 (306)
72 TIGR01475 ubiA_other putative 80.0 13 0.00029 35.9 9.6 35 145-179 164-199 (282)
73 PRK12847 ubiA 4-hydroxybenzoat 79.9 8.3 0.00018 37.5 8.2 36 145-180 171-207 (285)
74 TIGR01476 chlor_syn_BchG bacte 78.7 9.2 0.0002 37.0 8.1 30 150-179 172-202 (283)
75 PRK12887 ubiA tocopherol phyty 77.1 15 0.00033 36.2 9.2 27 146-172 189-215 (308)
76 PRK12324 phosphoribose diphosp 76.4 15 0.00033 36.1 8.8 30 285-314 59-89 (295)
77 PRK12392 bacteriochlorophyll c 75.1 13 0.00028 37.2 8.1 34 146-179 187-221 (331)
78 PRK12871 ubiA prenyltransferas 74.0 40 0.00086 33.1 11.1 35 146-180 182-217 (297)
79 PRK12888 ubiA prenyltransferas 73.4 46 0.001 32.4 11.4 36 145-180 165-201 (284)
80 PRK13106 ubiA prenyltransferas 73.3 11 0.00025 37.0 7.1 35 145-179 183-218 (300)
81 PRK12886 ubiA prenyltransferas 73.3 12 0.00025 36.7 7.2 35 146-180 169-204 (291)
82 PF01040 UbiA: UbiA prenyltran 73.1 18 0.0004 33.7 8.3 32 283-314 34-66 (257)
83 PRK12848 ubiA 4-hydroxybenzoat 72.7 48 0.001 32.1 11.3 37 144-180 167-204 (282)
84 PRK09573 (S)-2,3-di-O-geranylg 71.5 14 0.00031 35.7 7.3 33 147-179 162-195 (279)
85 PLN02809 4-hydroxybenzoate non 70.9 77 0.0017 31.0 12.3 30 285-314 58-88 (289)
86 PRK12882 ubiA prenyltransferas 69.4 79 0.0017 30.4 12.0 29 285-314 51-79 (276)
87 PRK05951 ubiA prenyltransferas 67.5 30 0.00064 33.9 8.6 35 150-186 182-216 (296)
88 PRK12869 ubiA protoheme IX far 64.9 1.1E+02 0.0023 29.7 11.9 31 284-314 48-79 (279)
89 PRK12870 ubiA 4-hydroxybenzoat 64.5 33 0.00071 33.5 8.3 37 145-181 172-209 (290)
90 PRK12883 ubiA prenyltransferas 64.0 41 0.00088 32.4 8.8 28 286-314 51-78 (277)
91 PRK04375 protoheme IX farnesyl 60.2 88 0.0019 30.5 10.4 30 285-314 57-87 (296)
92 PRK12874 ubiA prenyltransferas 59.8 27 0.00058 34.2 6.7 35 146-180 174-209 (291)
93 PRK12873 ubiA prenyltransferas 59.6 48 0.001 32.6 8.4 31 284-314 56-87 (294)
94 PRK13362 protoheme IX farnesyl 57.2 61 0.0013 32.0 8.8 31 284-314 59-90 (306)
95 PRK08238 hypothetical protein; 57.1 47 0.001 35.0 8.4 32 283-314 237-269 (479)
96 PRK11383 hypothetical protein; 55.2 1.3E+02 0.0028 26.4 9.2 58 239-300 72-131 (145)
97 PRK13595 ubiA prenyltransferas 54.9 2.2E+02 0.0048 28.0 14.8 22 285-306 60-81 (292)
98 PRK12878 ubiA 4-hydroxybenzoat 54.5 1.7E+02 0.0037 28.9 11.4 35 146-180 199-234 (314)
99 TIGR01473 cyoE_ctaB protoheme 52.9 86 0.0019 30.2 8.9 31 284-314 47-78 (280)
100 PRK12895 ubiA prenyltransferas 51.2 2E+02 0.0043 28.1 11.1 29 286-314 51-80 (286)
101 TIGR02748 GerC3_HepT heptapren 50.4 1.1E+02 0.0024 30.3 9.3 49 147-198 71-119 (319)
102 PLN02878 homogentisate phytylt 47.8 61 0.0013 31.7 6.9 39 149-190 166-205 (280)
103 PRK04214 rbn ribonuclease BN/u 47.6 1.6E+02 0.0034 30.3 10.3 18 149-166 115-132 (412)
104 COG1295 Rbn Ribonuclease BN fa 44.4 2.7E+02 0.0058 27.3 11.0 28 217-245 202-231 (303)
105 COG4147 DhlC Predicted symport 41.7 48 0.001 34.8 5.3 29 141-169 355-383 (529)
106 PRK12876 ubiA prenyltransferas 39.0 1.9E+02 0.0042 28.5 9.0 27 288-314 63-90 (300)
107 cd00867 Trans_IPPS Trans-Isopr 38.4 20 0.00044 33.2 2.0 31 283-313 157-197 (236)
108 PLN02776 prenyltransferase 36.7 4.6E+02 0.0099 26.4 12.8 31 284-314 41-72 (341)
109 PF03369 Herpes_UL3: Herpesvir 34.9 63 0.0014 27.5 4.0 71 22-112 24-99 (134)
110 COG0818 DgkA Diacylglycerol ki 30.5 3.5E+02 0.0075 23.2 9.4 80 86-176 5-90 (123)
111 PRK01637 hypothetical protein; 24.7 6.3E+02 0.014 24.3 10.8 21 147-167 105-125 (286)
112 PF04341 DUF485: Protein of un 24.0 3.7E+02 0.008 21.3 9.1 38 133-170 52-89 (91)
113 PRK10299 PhoPQ regulatory prot 23.9 1E+02 0.0023 21.6 3.0 20 150-169 16-35 (47)
114 PRK10581 geranyltranstransfera 23.8 83 0.0018 30.9 3.5 39 283-321 214-263 (299)
115 PF04971 Lysis_S: Lysis protei 20.7 1E+02 0.0022 23.6 2.6 28 143-170 36-63 (68)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1.2e-53 Score=405.95 Aligned_cols=275 Identities=44% Similarity=0.825 Sum_probs=247.9
Q ss_pred HHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHH
Q 016056 122 VCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALA 201 (396)
Q Consensus 122 g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~ 201 (396)
-+++|.+..++.++..+.+++.+++++++++.+...+|||+|+|+||+|||+||+|||++|+++++.+..++.++|+.++
T Consensus 6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la 85 (280)
T PLN02878 6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG 85 (280)
T ss_pred HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35566655556666677788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHH
Q 016056 202 FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIM 281 (396)
Q Consensus 202 ~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~ 281 (396)
+.+|++++.++++.+++++++||..+||+|+||++++...++....|..+.+|++.+++++++|++..++.+.++.++++
T Consensus 86 ~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~ 165 (280)
T PLN02878 86 WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFM 165 (280)
T ss_pred HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHH
Confidence 99998877777667778999999877999999999988888777777888999999988888887665565666666677
Q ss_pred HHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 016056 282 SIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWL 361 (396)
Q Consensus 282 ~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~ 361 (396)
.++..+++++||++|+|||++.|++|+|+++|++++.+++..++.++|+.+++.|+.....+...++..||++++..+|+
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~ 245 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ 245 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999998888888877778888999999999999999
Q ss_pred HHHHccCCChhhHHHHHHHhHHHHHHHHHHhhhcC
Q 016056 362 RSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396 (396)
Q Consensus 362 ~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~~~~~ 396 (396)
|.+++|++++++..+||||||++||+||+++||.|
T Consensus 246 rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 246 RAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=4.7e-52 Score=406.75 Aligned_cols=304 Identities=31% Similarity=0.491 Sum_probs=251.7
Q ss_pred chhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 016056 89 APSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID 167 (396)
Q Consensus 89 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D 167 (396)
|++.+++..+.+++|+|++|||+++++.++++.+.+++.....+ .....+...+.++++...++.+.+.+|||+|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 46677888889999999999999999999998888776432221 12212333444444455555555559999999999
Q ss_pred hccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHH
Q 016056 168 KINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM 247 (396)
Q Consensus 168 ~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~ 247 (396)
++|||+||+++|++|+++++.+.+++.++|+.+++..|++.+.++ +++.+++++||. ||+|+||+++.++++++..+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999997665444 578889999998 99999999998999988888
Q ss_pred HHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016056 248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327 (396)
Q Consensus 248 g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ 327 (396)
|..+.+|.+.+.... .+.....+...++..+++.+|+.++++.||++|+|||++.|+||+|+++|++++.+++..++.+
T Consensus 159 g~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~ 237 (308)
T PRK12887 159 GVIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA 237 (308)
T ss_pred HHHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence 877778876653322 2223334555556666777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHHHHHHHHHHhhhcC
Q 016056 328 GYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILIHFLR 396 (396)
Q Consensus 328 ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~~~~~ 396 (396)
+|+..++.+.....++....+..+|++.+..+++|.+++|.+++++..+||||||++||+||+++||.|
T Consensus 238 ~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 238 CYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888777766666666677799999999999999999999999999999999999999999999975
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.5e-36 Score=292.09 Aligned_cols=263 Identities=16% Similarity=0.109 Sum_probs=205.8
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCcc
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL 176 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RPl 176 (396)
++|+|+|++||++.......++.|.++|.+..+ ++.. +++.+++++++++++|++||++|+|+|++|+| +||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 478999999999999999999999998854322 2211 33456678899999999999999999999965 9999
Q ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHH
Q 016056 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (396)
Q Consensus 177 ~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~ 256 (396)
|+|++|++||+.+.+++.++++.++..+|+.++.++. ....+...|+. +||+++++|+.+|+..|.++..|+.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999888889988776553 44555566765 8999999999999999977777775
Q ss_pred HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016056 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336 (396)
Q Consensus 257 ~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g 336 (396)
+.. | ..++....+++.+...+|+.++|++|+++|+|+|++.|+||+|+++|++++.++...+..++.....+.|
T Consensus 150 Av~-----g-~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g 223 (286)
T PRK12895 150 AVI-----P-AFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG 223 (286)
T ss_pred HHc-----C-CCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence 532 2 2222222334445567899999999999999999999999999999999988776566666655555555
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhH-HHHH-HHhHH
Q 016056 337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQ-FGFY-MFLWQ 383 (396)
Q Consensus 337 ~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~-~~f~-~~iw~ 383 (396)
.... +..+.++.++.+..+.+|++.+|.+|+++| .+|| .+.|-
T Consensus 224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N~~i 268 (286)
T PRK12895 224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFI 268 (286)
T ss_pred HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHH
Confidence 4432 245667888888899999999999998888 6544 55443
No 4
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=289.63 Aligned_cols=271 Identities=18% Similarity=0.191 Sum_probs=203.8
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--C
Q 016056 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y 173 (396)
Q Consensus 96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~ 173 (396)
..+++++|+|++||++.++...+++.|..+|.++.+ ++.. +++++++.+++++++|++|||+|+|+|++|+| +
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~ 85 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN 85 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence 457899999999999999998888999998865433 3222 34567899999999999999999999999964 8
Q ss_pred CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHH
Q 016056 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (396)
Q Consensus 174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~l 253 (396)
||+|+|++|++|++.+.+++.+.++.++..+|+.+..++. ++.++.+.|+. +||+++++|+.+|+.+|..+..
T Consensus 86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~~ 158 (300)
T PRK13106 86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAVFS 158 (300)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999877777777777778877766553 44556678986 7999999999999999877777
Q ss_pred HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016056 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV 333 (396)
Q Consensus 254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~ 333 (396)
|+.+..+..........+...+++.....+|+.+++++|+++|+|+|++.|+||+|+++| ++++++...+..++.....
T Consensus 159 G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~ 237 (300)
T PRK13106 159 GAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDL 237 (300)
T ss_pred HHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHH
Confidence 765432110000000011122233344568999999999999999999999999999999 8888877777766666666
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHH
Q 016056 334 VAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQ 383 (396)
Q Consensus 334 ~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~ 383 (396)
..+....++ ..|.++..+....+.+|+..++.+ ++..+.|..+.|-
T Consensus 238 ~~~~~~~lg---~~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~i 283 (300)
T PRK13106 238 LGDLYYGLG---PIAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIYS 283 (300)
T ss_pred HHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence 555554443 345566667778889999988887 5566777666443
No 5
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=2.6e-35 Score=285.82 Aligned_cols=260 Identities=16% Similarity=0.164 Sum_probs=200.8
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc--CCCCcc
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYLPL 176 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n--~p~RPl 176 (396)
++++|+|++||++.......+..|.++|.++.+ ++.. +++++++.+++++++|++|||+|+|+|++| +|+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~~---~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLKT---LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 468999999999999998888889988855422 3321 455778999999999999999999999999 569999
Q ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHH
Q 016056 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (396)
Q Consensus 177 ~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~ 256 (396)
++|++|+++++.+++++.++++.++..+|+.+..++ ..+.++.+.|+. +||++.+++++.|+..|.++..|+.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~ 148 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV 148 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999998888778888888887766554 345556789986 7999999999999988877777765
Q ss_pred HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016056 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336 (396)
Q Consensus 257 ~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g 336 (396)
+.. | ..+.....+++.....+|+.+.+++||++|+|+|+++|+||+|+++|+|++.++...+..+++....+.+
T Consensus 149 a~~-----g-~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (282)
T TIGR01475 149 AVI-----G-TISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG 222 (282)
T ss_pred HHh-----C-CccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 2 2221122333444557889999999999999999999999999999999998887776767776665555
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHH-HHH
Q 016056 337 ATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFG-FYM 379 (396)
Q Consensus 337 ~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~-f~~ 379 (396)
.....+ ..+.++..+....++++.+..|.+|++.+++ |+.
T Consensus 223 ~~~~~g---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~ 263 (282)
T TIGR01475 223 FYVGNG---YIALLALILIGLILAYEHYIVDPGDQSKIQRAFFY 263 (282)
T ss_pred HHhhCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 544433 3444555556677888989999988877765 443
No 6
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8.5e-35 Score=283.01 Aligned_cols=265 Identities=18% Similarity=0.183 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHhhccc---CCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc
Q 016056 94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN 170 (396)
Q Consensus 94 ~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~---~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n 170 (396)
++.++++++|+|++||++.+.+...++.|.++|... ....++.. +++++++.+++++++|++|||+|+|+|++|
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKL---LILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 356678999999999999999988888888887521 11233332 455778889999999999999999999999
Q ss_pred CC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH
Q 016056 171 KP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248 (396)
Q Consensus 171 ~p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g 248 (396)
+| +||+++|++|+++++.+++++.++++.+++.+|+.+..++ +..++....||. +||++.++++.+|+.+|
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~ 151 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLG 151 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence 85 8999999999999999998888888888888888776555 345666889997 89999999999999999
Q ss_pred HHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016056 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG 328 (396)
Q Consensus 249 ~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~a 328 (396)
.++.+|+.+.. | .. +.+.+++.+...+|+.+.+++++++|+|+|+++|++|+|+++|++++.++.......+
T Consensus 152 ~~~l~G~~av~-----g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~ 223 (291)
T PRK12874 152 LAPIAGVVAVL-----G-EI--PLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA 223 (291)
T ss_pred HHHHHHHHHHc-----C-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence 88888876531 2 22 2223344455578999999999999999999999999999999998887655544444
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHH
Q 016056 329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM 379 (396)
Q Consensus 329 y~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~ 379 (396)
.+.....+...... ..+.++..+.+..++++.+..+.++++.++.|+.
T Consensus 224 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~ 271 (291)
T PRK12874 224 VLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFT 271 (291)
T ss_pred HHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 43333333322222 2334455566667888888887777767777654
No 7
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=5.4e-35 Score=284.44 Aligned_cols=265 Identities=19% Similarity=0.205 Sum_probs=199.1
Q ss_pred HHHHHHHHHHhhccchHHHHH---HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC
Q 016056 96 VKRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP 172 (396)
Q Consensus 96 ~~~~l~~~~~l~Rp~~~~~~~---l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p 172 (396)
.++++++|+|++||+++.++. ++++.|..+|.+..+ ++.. +++++++.+++++++|++|||+|+|+|++|+|
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 346789999999999987765 577888888855432 2221 34567888999999999999999999987664
Q ss_pred --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056 173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (396)
Q Consensus 173 --~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~ 250 (396)
+||+++|++|++|+..+++++.++++.+++.+|+.++.+++ .+.++.++||. .||++.++++++|+.+|.+
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence 89999999999999999999999999998888887766653 46667889986 7999989999999988877
Q ss_pred HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016056 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG 330 (396)
Q Consensus 251 ~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~ 330 (396)
+..|+.+.. | .. +...+++.+...+|+.+++++++++|+|+|+++|+||+|+++|++++.++.. +..++..
T Consensus 153 ~l~g~~a~~-----g-~~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~ 223 (290)
T PRK12870 153 VLISWSAVT-----G-HL--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVG 223 (290)
T ss_pred HHHHHHHHc-----C-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHH
Confidence 666665421 2 22 2233344455678999999999999999999999999999999998877654 3333333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHc--cCCChhhHHHHH-HHhHHH
Q 016056 331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKV--DLDNFDSQFGFY-MFLWQL 384 (396)
Q Consensus 331 ~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~--d~~~~~~~~~f~-~~iw~l 384 (396)
.....+.....+ ..+.++..+....+.++...+ |.++++.|++|| .+.|-+
T Consensus 224 ~l~~~~~~~~~~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g 277 (290)
T PRK12870 224 FLAILGVLLELH---LPFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIG 277 (290)
T ss_pred HHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHH
Confidence 333444444333 234455666677888898888 666777776665 444443
No 8
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.8e-34 Score=279.73 Aligned_cols=261 Identities=17% Similarity=0.067 Sum_probs=198.9
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcc-cCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCc
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQ-SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~-~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RP 175 (396)
++++|+|++||++.+.....++.|.+.+.. ..+..++.. +++.+++.+++++++|++|||+|+|+|++|+| +||
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP 77 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE 77 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence 368999999999988876666666655531 111233322 45577899999999999999999999999984 899
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHH
Q 016056 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255 (396)
Q Consensus 176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~ 255 (396)
+|+|++|+++++.+++++.++++.++..+|+.++.++ .++++..+.|+. .||+++++++.+|+.++.++..|+
T Consensus 78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~ 150 (284)
T PRK12888 78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAW 150 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999988888888888878887766555 345556778986 799999999999998887777776
Q ss_pred HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHH
Q 016056 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVA 335 (396)
Q Consensus 256 ~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~ 335 (396)
.+.. | .. +...+++.+...+|+.+++++|+++|+|+|++.|+||+|+++|+|++.++...+..+.++.....
T Consensus 151 ~a~~-----g-~~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~ 222 (284)
T PRK12888 151 IAVT-----G-TW--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF 222 (284)
T ss_pred HHHc-----C-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH
Confidence 5431 2 22 32334445566789999999999999999999999999999999999887666666666555555
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHH-HHH-HH
Q 016056 336 GATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQF-GFY-MF 380 (396)
Q Consensus 336 g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~-~f~-~~ 380 (396)
+.....++ .+.++..+.+..+.+|++.+|.+|++.|. .|+ .+
T Consensus 223 ~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n 266 (284)
T PRK12888 223 GLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTAN 266 (284)
T ss_pred HHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHh
Confidence 55444443 44556667778899999999999877664 765 44
No 9
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4e-34 Score=278.40 Aligned_cols=265 Identities=17% Similarity=0.149 Sum_probs=198.0
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--C
Q 016056 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y 173 (396)
Q Consensus 96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~ 173 (396)
+.+++++|+|++||++......+++.|.++|.++.++ +. .+++++++.+++++++|++|||+|+|+|++|+| +
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 3477999999999999999988889999988544332 21 134567889999999999999999999999985 8
Q ss_pred CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHH
Q 016056 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (396)
Q Consensus 174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~l 253 (396)
||+++|++|++++..+.+.+.+.++.+++.+|+++..+++ ++.+..+.|+. +||++.++++..|+.++.++..
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~ 151 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG 151 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence 9999999999999988766666666666778887766653 45566789997 7999999999999988877767
Q ss_pred HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016056 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV 333 (396)
Q Consensus 254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~ 333 (396)
|+.+.. | .. +...+++.+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+....
T Consensus 152 g~~a~~-----g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~ 223 (291)
T PRK12886 152 AWIAIR-----G-TI--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF 223 (291)
T ss_pred HHHHHc-----C-CC--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence 765431 2 22 223334445557889999999999999999999999999999999998876565555555544
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCCh-hhHHH-HHHHhHH
Q 016056 334 VAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNF-DSQFG-FYMFLWQ 383 (396)
Q Consensus 334 ~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~-~~~~~-f~~~iw~ 383 (396)
+.+.....+ ..+.++..+....+.++.+..+.+|+ +.+++ |..++|-
T Consensus 224 ~~~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~ 272 (291)
T PRK12886 224 ALGISAGLG---PWFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYI 272 (291)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHH
Confidence 444433333 34445555566666678888887774 46666 4444443
No 10
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=3.5e-34 Score=278.15 Aligned_cols=263 Identities=18% Similarity=0.177 Sum_probs=198.8
Q ss_pred HHHHHHHHHhhccchHHHHHH---HHHHHHHhhc--ccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC
Q 016056 97 KRKLNAISHVTRYYAQINIIV---SVTSVCFLPV--QSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171 (396)
Q Consensus 97 ~~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~--~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~ 171 (396)
++++++|+|++|.+++.++.+ ++..|..++. +..+ ++.. +++++++.+++++++|++||++|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~--~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~ 77 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLP--DLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVE 77 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCC--cHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence 367899999999999877754 4555666553 2222 2222 3456788899999999999999999999986
Q ss_pred C--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHH
Q 016056 172 P--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL 249 (396)
Q Consensus 172 p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~ 249 (396)
| +||+|+|++|+++++.+.+++.++++.+++.+|+..+.++ .++.++.++||. +||++.++++..|+.++.
T Consensus 78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~ 150 (289)
T PLN02809 78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW 150 (289)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence 4 8999999999999999999999999999888887776665 456667889986 899999999999988887
Q ss_pred HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016056 250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY 329 (396)
Q Consensus 250 ~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay 329 (396)
++.+|+.+. .|. .+. ...+.+.....+|+.+.+++++++|+|+|++.|+||+|+++|++...++. .+..+++
T Consensus 151 ~~l~g~~av-----~g~-~~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~ 222 (289)
T PLN02809 151 GALLGWAAV-----KGS-LDP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASI 222 (289)
T ss_pred HHHHHHHHH-----hCC-CCh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHH
Confidence 777776543 232 111 12222344556789999999999999999999999999999999665554 4555556
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHH-HHhH
Q 016056 330 GGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY-MFLW 382 (396)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~-~~iw 382 (396)
......+.....+ ..+.+++.+.+..+++|.+.+|.+|+++|.++| .+.|
T Consensus 223 ~~l~~~g~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~n~~ 273 (289)
T PLN02809 223 GGLALSGYNAGLG---WPYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFVSNKW 273 (289)
T ss_pred HHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCH
Confidence 5555555544333 234457777788899999999999988776654 4433
No 11
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=1.2e-33 Score=282.56 Aligned_cols=220 Identities=23% Similarity=0.269 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchH---HHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC
Q 016056 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA---FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171 (396)
Q Consensus 95 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~---~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~ 171 (396)
..++++++|++++||+++...++++++|.... + .+++. ++..++++++++.++++++|++|||+|+|+|++|+
T Consensus 80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g---~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~ 155 (375)
T PLN00012 80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G---NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINE 155 (375)
T ss_pred cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCC
Confidence 35578999999999999999999999998843 2 22222 11123556778889999999999999999999999
Q ss_pred CCCccccCccCHHHHHHHHHHHHHHHHHHHHHh-------cHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHH
Q 016056 172 PYLPLASGELSMGTGIAICAGSALLSLALAFLS-------GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV 244 (396)
Q Consensus 172 p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~l-------g~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg 244 (396)
|+||+++|++++++++.++.++.++++.+++.+ +++.+.++ +++.+++++||. ||+++||++++|++.+|
T Consensus 156 ~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~-l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG 232 (375)
T PLN00012 156 PYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA-LGGSLLSYIYSA--PPLKLKQNGWIGNYALG 232 (375)
T ss_pred CCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-HHHHHHhhhhcC--CchhhhHhccHhHHHHH
Confidence 999999999999999997766666666555443 33333333 456778999999 99999999999999888
Q ss_pred HHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056 245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324 (396)
Q Consensus 245 ~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 324 (396)
..++. ++++.. ..+.|. ++...+++.++.++|+.++++.||++|+|+|++.|++|+|+++|++++++++..+
T Consensus 233 ~~~~~---lp~~~g--~a~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~ 304 (375)
T PLN00012 233 ASYIS---LPWWAG--QALFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGS 304 (375)
T ss_pred HHHHH---HHHHHH--HHHcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHH
Confidence 76652 222221 122232 2333444445566789999999999999999999999999999999999887654
Q ss_pred HHHHH
Q 016056 325 MLLGY 329 (396)
Q Consensus 325 ~~~ay 329 (396)
+.+.+
T Consensus 305 l~l~~ 309 (375)
T PLN00012 305 IDITQ 309 (375)
T ss_pred HHHHH
Confidence 44443
No 12
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.8e-34 Score=275.92 Aligned_cols=261 Identities=19% Similarity=0.260 Sum_probs=195.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccc
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~ 177 (396)
+++++|+|++||+++..+.++++.|.++|.+..+ .+ .+++++++.+++++++|++|||+|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~--~~----~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP--LD----EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc--hH----HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 4789999999999999999999999988854322 11 24556788999999999999999999999999999999
Q ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHH
Q 016056 178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFI 257 (396)
Q Consensus 178 sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~ 257 (396)
+|++|+++++.+++++.++++.++..+|+..+.++ +++.+.++.||. ++||+++++++++++.+|.++..|+..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888887766554 456778899997 479999889999999888666666543
Q ss_pred HhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHH
Q 016056 258 HSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGA 337 (396)
Q Consensus 258 ~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~ 337 (396)
. +.. +...+++.....+|+.+.++.+|++|+|+|+++|+||+|+++|++++.++...+..+.++...+...
T Consensus 150 ~------~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK12884 150 V------GEL---NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL 220 (279)
T ss_pred h------CCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 221 1123333345567888899999999999999999999999999999998876666666654433332
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHH-HHccCCChhhHHHHHHHhH
Q 016056 338 TSTLMISKLVTIIGHIILALMMWLRS-RKVDLDNFDSQFGFYMFLW 382 (396)
Q Consensus 338 ~~~~~~~~~~~~~g~~i~~~~l~~~~-~~~d~~~~~~~~~f~~~iw 382 (396)
....++ .+.+...+....+.++. +..+.+|++.++++..+.+
T Consensus 221 ~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 263 (279)
T PRK12884 221 FGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITL 263 (279)
T ss_pred HHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 222232 33344444444555553 5556666666666544433
No 13
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=4.3e-34 Score=281.13 Aligned_cols=225 Identities=22% Similarity=0.215 Sum_probs=175.4
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchH-HHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCC
Q 016056 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA-FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174 (396)
Q Consensus 96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~R 174 (396)
.++++++|++++||+++..++++++.|++.+.. .++... .+..++.++++..++++++|++|||+|+|+|++|+|+|
T Consensus 23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R 100 (314)
T PRK07566 23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR 100 (314)
T ss_pred cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence 347789999999999999999998888876532 122211 11112345677788999999999999999999999999
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHH
Q 016056 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQI 253 (396)
Q Consensus 175 Pl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~l 253 (396)
|+++|++|+++++.+++++.++++.+++.+|++...++ +++++++++||. ||+++||+++++|+.+|+.+| .++..
T Consensus 101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~ 177 (314)
T PRK07566 101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWA 177 (314)
T ss_pred CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888887766554 457777899999 899999999889999998876 33333
Q ss_pred HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHH
Q 016056 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGA 332 (396)
Q Consensus 254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~ 332 (396)
++.. .+. ...+...++...+.++++.+++++||++|+|+|+++|+||+|+++|+++++++...++.++|+..
T Consensus 178 g~~~------~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 178 GAAA------FGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred HHHH------hcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 3322 121 11233334444455677888999999999999999999999999999999988877777776653
No 14
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=3.2e-34 Score=278.32 Aligned_cols=220 Identities=19% Similarity=0.156 Sum_probs=172.3
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccC
Q 016056 101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG 179 (396)
Q Consensus 101 ~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG 179 (396)
|+|+|++||+++..++++++.|.+++...... +++.. .++.+++++.+.++++|++|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46899999999999999999999887322122 33321 2344667889999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHH-HHHHHHHHH
Q 016056 180 ELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL-ILQIPYFIH 258 (396)
Q Consensus 180 ~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~-~~~lg~~~~ 258 (396)
++|+++++.+++++.++++.+++.++.+...+..+++.+.+++||. ||+++||+++++++.+++.++. +...++.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-- 154 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-- 154 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999888877766522323457778999999 9999999998999999887662 2222221
Q ss_pred hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016056 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV 333 (396)
Q Consensus 259 ~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~ 333 (396)
..+ . .+...++.....++++.+++++||++|+|+|+++|+||+|+++|+|++++++..++.++|+..+
T Consensus 155 ----~~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~ 222 (283)
T TIGR01476 155 ----IFA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVI 222 (283)
T ss_pred ----HhC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHH
Confidence 122 1 2333333344556788889999999999999999999999999999999998777777775544
No 15
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=9.2e-34 Score=274.64 Aligned_cols=255 Identities=18% Similarity=0.172 Sum_probs=188.2
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCcccc
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~s 178 (396)
++++|+|++||+++..++++++.|.+++.+... ++. .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKI--DLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCc--chH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 478999999999999999999999988854322 222 145577889999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHH
Q 016056 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (396)
Q Consensus 179 G~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~ 258 (396)
|++|+++++.+++++.++++.+++.+|+....++ +++.++.++||. ++||++.++|+++|..+|..+..|+...
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~ 150 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV 150 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888776655 356667889996 4799998899999999986666665442
Q ss_pred hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016056 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT 338 (396)
Q Consensus 259 ~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~~ 338 (396)
+. . . ..+++.....+|+.+++++||++|+|+|+++|+||+|+++|+|++.++......+......+ ...
T Consensus 151 ------~~--~-~-~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~-~~~ 219 (279)
T PRK09573 151 ------FN--V-L-RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPL-PYF 219 (279)
T ss_pred ------cc--c-h-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 21 1 1 22233344457888899999999999999999999999999999988765544443333222 111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-HHHccCCChhhHHHH
Q 016056 339 STLMISKLVTIIGHIILALMMWLR-SRKVDLDNFDSQFGF 377 (396)
Q Consensus 339 ~~~~~~~~~~~~g~~i~~~~l~~~-~~~~d~~~~~~~~~f 377 (396)
. +..+..|.++..+....+.++ .+..+.++++.++..
T Consensus 220 ~--~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 257 (279)
T PRK09573 220 L--GIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKA 257 (279)
T ss_pred H--HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence 1 112234444444444555555 444455556554443
No 16
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.6e-33 Score=276.64 Aligned_cols=264 Identities=19% Similarity=0.133 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHhhcccC---CCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhh
Q 016056 94 EVVKRKLNAISHVT---RYYAQINIIVSVTSVCFLPVQSL---SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID 167 (396)
Q Consensus 94 ~~~~~~l~~~~~l~---Rp~~~~~~~l~~l~g~llA~~~~---~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D 167 (396)
+.++.++++|+|++ ||+......++++.|.++|.... ...++. .+++++++.+++++++|++|||+|+|+|
T Consensus 24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD 100 (314)
T PRK12878 24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDID 100 (314)
T ss_pred hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34778899999999 88888888999999999985421 123322 2456778999999999999999999999
Q ss_pred hccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHH
Q 016056 168 KINKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVI 245 (396)
Q Consensus 168 ~~n~p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~ 245 (396)
++|+| +||+++|++|+++++.+++++.++|+.+.+..|++.+.++ ++++++.+.||. +||++.+++...|+
T Consensus 101 ~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~Gl 173 (314)
T PRK12878 101 AKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFLGL 173 (314)
T ss_pred cCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHHHH
Confidence 98775 8999999999999999999999999988888887766555 456777889986 89998888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHH
Q 016056 246 LMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMM 325 (396)
Q Consensus 246 ~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~ 325 (396)
.++.++..|+++.. | .. +...+++.....+|+...+.+++++|+|+|+++|+||+|+++|+++++++... +
T Consensus 174 ~~~~~~l~g~~a~~-----g-~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~-~ 244 (314)
T PRK12878 174 AFSWGALMGWAAHF-----G-SL--SLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF-Y 244 (314)
T ss_pred HHHHHHHHHHHHHh-----C-CC--chHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHH-H
Confidence 77766667765432 3 22 22333334445678999999999999999999999999999999999887643 3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHH
Q 016056 326 LLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM 379 (396)
Q Consensus 326 ~~ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~ 379 (396)
.+......+.+.....++ .+.++.......+.++..++|.++++.|+++|.
T Consensus 245 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~ 295 (314)
T PRK12878 245 GLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFK 295 (314)
T ss_pred HHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH
Confidence 333333233333333333 233444445556788888888888777776654
No 17
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.5e-33 Score=272.36 Aligned_cols=266 Identities=15% Similarity=0.148 Sum_probs=195.5
Q ss_pred HHHHHHHHHHhhccchHHH---HHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC
Q 016056 96 VKRKLNAISHVTRYYAQIN---IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP 172 (396)
Q Consensus 96 ~~~~l~~~~~l~Rp~~~~~---~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p 172 (396)
.++++++|+|++||+++.. ..++++.|.++|.... ..++. ..++++++++++++++|++|||+|+|+|++|+|
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 3467999999999998775 4567888988885432 12332 245577888999999999999999999998764
Q ss_pred --CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056 173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (396)
Q Consensus 173 --~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~ 250 (396)
+||+++|++|+++++.+++++.++++.+++.+|+..+.++ +++.+.++.||. .||++.+++++.|+.++.+
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~ 151 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMG 151 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence 8999999999999999999999999988888887776665 456677889986 7999989999999888866
Q ss_pred HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016056 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG 330 (396)
Q Consensus 251 ~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~ 330 (396)
+..++.+. ++.. +...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus 152 ~l~~~~a~------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~ 223 (285)
T PRK12847 152 ILMAFAAV------QNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL 223 (285)
T ss_pred HHHHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence 66665442 2222 333344445567899999999999999999999999999999999998877655544443
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHH-HHHhHHH
Q 016056 331 GAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGF-YMFLWQL 384 (396)
Q Consensus 331 ~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f-~~~iw~l 384 (396)
..+ .+...... ...+ .+.++...+++++...+|.+|++.++++ ..+.+.+
T Consensus 224 ~~~-~~~~~~~~--~~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 274 (285)
T PRK12847 224 WLI-LGIISSLH--NIFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVG 274 (285)
T ss_pred HHH-HHHHhcCc--HHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHH
Confidence 322 22222221 1222 2333445577888888888887665554 3334433
No 18
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=273.61 Aligned_cols=264 Identities=16% Similarity=0.184 Sum_probs=194.9
Q ss_pred HHHHHHHHHhhccchHHHHH---HHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC-
Q 016056 97 KRKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP- 172 (396)
Q Consensus 97 ~~~l~~~~~l~Rp~~~~~~~---l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p- 172 (396)
++++++|+|++|++++.... ++++.|..+|.+..++ +.. +++++++.+++++++|++|||+|+|+|++|+|
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 35789999999987765554 4677888887543322 221 34466788899999999999999999998764
Q ss_pred -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHH
Q 016056 173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (396)
Q Consensus 173 -~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~ 251 (396)
+||+++|++|++++..+++++.++++.+++.+|+....++ +++.+..++|+. .||++.++++.+|+.+|.++
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence 8999999999999999999999999988888887766555 456667889975 79998899999999888666
Q ss_pred HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016056 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG 331 (396)
Q Consensus 252 ~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~ 331 (396)
.+|+.+.. | . .+...+++.....+|+...++.++++|+|+|+++|+||+|+++|++++.+... ++.+....
T Consensus 150 ~~g~~a~~-----~-~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~ 220 (282)
T PRK12848 150 PMAFAAVQ-----G-S--VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGL-LQLATLAL 220 (282)
T ss_pred HHHHHHHh-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHH-HHHHHHHH
Confidence 66665421 2 2 23233444455678999999999999999999999999999999998877653 33333333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHH-HHhHHH
Q 016056 332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY-MFLWQL 384 (396)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~-~~iw~l 384 (396)
....+.....+ ..+.++..+....+.++...+|.+|+++|.++| .+.|-+
T Consensus 221 ~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~~g 271 (282)
T PRK12848 221 LAWAGWLLGLG---WAYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNWVG 271 (282)
T ss_pred HHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcHHH
Confidence 33333333222 345566667778888999999998877665544 444433
No 19
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-33 Score=273.68 Aligned_cols=258 Identities=21% Similarity=0.219 Sum_probs=188.2
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCcccc
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~s 178 (396)
++|+|+|++||++...+.++++.|++++.+..+ +... .++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~~---~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPSL---TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 478999999999999999999999998854322 1111 34567888999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHH
Q 016056 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (396)
Q Consensus 179 G~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~ 258 (396)
|++|+++++.++.++.++++.+++.+|+....++ +++.++.++||. |+||++.++|+.+|...|.++.+|...
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~- 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA- 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999888887666554 456667889986 589999889999988777555555432
Q ss_pred hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016056 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT 338 (396)
Q Consensus 259 ~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~~ 338 (396)
.+.. .....+.+.+..++++++++++||++|+|+|+++|+||+|+++|+|++.++.............+.-..
T Consensus 151 -----~~~~--~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~ 223 (276)
T PRK12882 151 -----VGTE--GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL 223 (276)
T ss_pred -----hccc--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1211 111222333444567888999999999999999999999999999999887655554433322211111
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHccCCChhhHHHHH
Q 016056 339 STLMISKLVTIIGHIIL-ALMMWLRSRKVDLDNFDSQFGFY 378 (396)
Q Consensus 339 ~~~~~~~~~~~~g~~i~-~~~l~~~~~~~d~~~~~~~~~f~ 378 (396)
...+ ..+.+...+. ...+..+.+..+.+|++.+++++
T Consensus 224 ~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f 261 (276)
T PRK12882 224 STFG---LWYLVLVAPADLVMLAAAYRSLKKTDPTASQKLL 261 (276)
T ss_pred HHhh---HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1222 2333333332 33445567777777777665543
No 20
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.6e-33 Score=272.92 Aligned_cols=268 Identities=16% Similarity=0.128 Sum_probs=202.2
Q ss_pred HHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--
Q 016056 98 RKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-- 172 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p-- 172 (396)
+++++|+|++||+++.++.+ +.+.|.+++.+..+ ++. ..++++++.+++++++|++||+.|+|+|++|+|
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 46889999999998877644 55677776643322 222 145677899999999999999999999999876
Q ss_pred CCccccCccCHHHHHHHHHHHHHHHHHHHHHh----cHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH
Q 016056 173 YLPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248 (396)
Q Consensus 173 ~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~l----g~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g 248 (396)
+||+++|++|+++|+.+++++.++++.+.+.+ |+.++.++ .++++....||. +||++.+.+++.|+..+
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a 152 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCWG 152 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence 89999999999999999999999998887665 45555554 345557789997 89999999999999888
Q ss_pred HHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016056 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG 328 (396)
Q Consensus 249 ~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~a 328 (396)
.++.+||.+.. | ..++....+++.+...+|+.+.+++++++|+|+|+++|++|+|+++|++ +......+..++
T Consensus 153 ~~~l~gw~Av~-----g-~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~ 225 (294)
T PRK12873 153 FAVLIPWAAAE-----G-SLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLT 225 (294)
T ss_pred hHHHHHHHHHh-----C-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHH
Confidence 88888876542 3 2222223333335567899999999999999999999999999999975 445555666666
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC--hhhH-HHHHHHhHHHHHH
Q 016056 329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDN--FDSQ-FGFYMFLWQLNYV 387 (396)
Q Consensus 329 y~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~--~~~~-~~f~~~iw~l~~~ 387 (396)
.......|.....+ ..|.++.++.+..+.+|++.+|.++ +++| +.|..+.|.+...
T Consensus 226 ~~ll~~~g~~~~l~---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~~i 284 (294)
T PRK12873 226 SIFLALAAFIAQVG---FIFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGSLL 284 (294)
T ss_pred HHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHHHH
Confidence 66566666665544 3455666677788899999999887 3555 6676777766543
No 21
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5e-33 Score=269.54 Aligned_cols=280 Identities=16% Similarity=0.154 Sum_probs=201.8
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhc------cc---CCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhh
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPV------QS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK 168 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~------~~---~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~ 168 (396)
++++.|.|+.|.++-+...--...|+++|. ++ .+ ++. .+++..++.+++++++|++||++|+|+|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~~~---~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~ 76 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--GIK---TISLGGSAFFCARTVGIIVNQIIDCAIDK 76 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccC
Confidence 468999999999988777666677888884 22 22 222 24567789999999999999999999999
Q ss_pred ccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHH
Q 016056 169 INKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVIL 246 (396)
Q Consensus 169 ~n~p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~ 246 (396)
+|+| +||+|+|++|+++|+.+.+++.++++.++..+|+.++.++. ++.++.++||. +||++++++++.|++
T Consensus 77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~ 149 (300)
T PRK12876 77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLV 149 (300)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHH
Confidence 9996 99999999999999999987777777788888988776664 56666789987 899999999999988
Q ss_pred HHHHHHHHHHHHhhhhhhCCCCCChH--HHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056 247 MGLILQIPYFIHSQTYLLGKPFEVTG--PFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324 (396)
Q Consensus 247 ~g~~~~lg~~~~~~~~l~g~~~~~~~--~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 324 (396)
.+..+..++.+. .++..++.. ..++......+|..++|++|+++|+|+|++.|+||+|+++|++++.++...+
T Consensus 150 ~~~~~l~~~~Av-----~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~ 224 (300)
T PRK12876 150 YYLAILMNFFAI-----IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASAN 224 (300)
T ss_pred HHHHHHHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHH
Confidence 887666666543 232111100 1112223345677789999999999999999999999999999887766666
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHccCCChhhHHHHHHH-hH--HHHHHHHHHhhhcC
Q 016056 325 MLLGYGGAVVAGATSTLMISKLVTIIGHI--ILALMMWLRSRKVDLDNFDSQFGFYMF-LW--QLNYVEYILIHFLR 396 (396)
Q Consensus 325 ~~~ay~~~~~~g~~~~~~~~~~~~~~g~~--i~~~~l~~~~~~~d~~~~~~~~~f~~~-iw--~l~~~~y~~~~~~~ 396 (396)
..++.+..++.+.....++. .+..+.. .....+++|.+.+|.|+++.|.+||.. .| -++++..+..+.+|
T Consensus 225 ~~l~~~~l~~~g~~~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~~ 299 (300)
T PRK12876 225 LIASAIAYLLIGYFVSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFLLR 299 (300)
T ss_pred HHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHccC
Confidence 66655555555655544432 2333443 222334566577777778888776644 33 34455566666555
No 22
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=4.1e-33 Score=275.06 Aligned_cols=253 Identities=17% Similarity=0.201 Sum_probs=177.6
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccC-CCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCc
Q 016056 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSL-SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP 175 (396)
Q Consensus 97 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~-~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RP 175 (396)
.+++|+|+|++||+++. ..++++.|.++|.+.. +...... +.+...++.+.+..+++|++|||+|+|+|++|+|.||
T Consensus 9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~-l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRp 86 (331)
T PRK12392 9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYL-LLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRP 86 (331)
T ss_pred hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHH-HHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCC
Confidence 46799999999999998 6677777777875422 2222111 1122233444566678999999999999999999999
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHhcH-------HHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH
Q 016056 176 LASGELSMGTGIAICAGSALLSLALAFLSGS-------PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248 (396)
Q Consensus 176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~-------~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g 248 (396)
+++|++|+++++.+.+++.++++.++..++. +.+.+..+++++++++||. ||+++||+++.++..+|+.++
T Consensus 87 l~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~ 164 (331)
T PRK12392 87 IPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYG 164 (331)
T ss_pred CCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHH
Confidence 9999999999999999888888877666542 2222322456778999999 999999999889988888887
Q ss_pred HHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016056 249 LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG 328 (396)
Q Consensus 249 ~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~a 328 (396)
.....++.+ .+|. .+...+++.+..++|+.+++++||++|+|+|++.|+||+|+++|++++.++......+.
T Consensus 165 ~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~ 236 (331)
T PRK12392 165 FITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLV 236 (331)
T ss_pred HHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHH
Confidence 433333222 2232 23333444455678899999999999999999999999999999999988765555455
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016056 329 YGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSR 364 (396)
Q Consensus 329 y~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~ 364 (396)
.+..+..+.....++. +....++.+..+++|.+
T Consensus 237 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~ 269 (331)
T PRK12392 237 FAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQ 269 (331)
T ss_pred HHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHH
Confidence 5555444544444322 22333334444555544
No 23
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-32 Score=267.53 Aligned_cols=273 Identities=25% Similarity=0.324 Sum_probs=205.0
Q ss_pred HHHHHHHHHhhccchHHH---HHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC-
Q 016056 97 KRKLNAISHVTRYYAQIN---IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP- 172 (396)
Q Consensus 97 ~~~l~~~~~l~Rp~~~~~---~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p- 172 (396)
+.+++.+.+++|+++++. ...+..+|..++....+. +...++++++++++++++|++||++|+|+|++|+|
T Consensus 7 ~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt 81 (289)
T COG0382 7 PNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRT 81 (289)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCc
Confidence 344555555555555544 455666676666422221 22356678889999999999999999999999999
Q ss_pred -CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHH
Q 016056 173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (396)
Q Consensus 173 -~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~ 251 (396)
+||+|+|++|+++++.+.+++.++++.+++.+|++.+.+. +++.++.+.|.. +||.++++++++|.++|..+
T Consensus 82 ~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~~------~Kr~~~~~~~~lg~~~~~~~ 154 (289)
T COG0382 82 KNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYPF------LKRFTFLPQLVLGLAFGLGA 154 (289)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998776555 567888899954 99999999999999999777
Q ss_pred HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016056 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG 331 (396)
Q Consensus 252 ~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~ 331 (396)
..|+.+.. | . .....+++.++..+|+.+++++||++|+|+|++.|++|+|+.+|++++..+..... .....
T Consensus 155 ~~g~~a~~-----~-~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~ 225 (289)
T COG0382 155 LAGAAAVG-----G-S--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASAL 225 (289)
T ss_pred HHHHHHHh-----C-c--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHH
Confidence 77765431 2 1 22334455566778999999999999999999999999999999999988876555 33333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHHHHHHHHHHh
Q 016056 332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYILI 392 (396)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~~ 392 (396)
....+...... ...+..++.+....+.++...+|.++++.+..++.....+-.+.++..
T Consensus 226 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (289)
T COG0382 226 LVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFIGL 284 (289)
T ss_pred HHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHHHH
Confidence 33333322221 135666777778888999999999888888888776555555554443
No 24
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=1.2e-32 Score=269.93 Aligned_cols=223 Identities=22% Similarity=0.245 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHH---HHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC
Q 016056 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171 (396)
Q Consensus 95 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~---l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~ 171 (396)
..++++++|+|++||+++..++++++.|...+. .+++.. +..++.+++++.++++++|.+|||+|+|.|+.|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~ 86 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE 86 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence 345778999999999999999999999988542 222211 1123445677799999999999999999999999
Q ss_pred CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc-------HHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHH
Q 016056 172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-------SPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV 244 (396)
Q Consensus 172 p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg-------~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg 244 (396)
|+||+++|++++++++.+++++.++++.+++.+. ++.+.++ +++++++++||. ||+++||++++|++.++
T Consensus 87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYSA--PPLKLKQNGWLGNFALG 163 (306)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHcC--ChhhhhhcccHHHHHHH
Confidence 9999999999999999998888888877765542 3333343 467778999999 99999999988999888
Q ss_pred HHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056 245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324 (396)
Q Consensus 245 ~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 324 (396)
..++..+..+.++ +.| . ++...++.....++|+.++++.||++|+|+|++.|+||+|+++|+|++++++..+
T Consensus 164 ~~~~~~~~~~~~a-----~~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l 235 (306)
T TIGR02056 164 ASYIALPWWAGHA-----LFG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGA 235 (306)
T ss_pred HHHHHHHHHHHHH-----HhC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHH
Confidence 7666322222111 123 1 2333344445566789999999999999999999999999999999999988777
Q ss_pred HHHHHHHH
Q 016056 325 MLLGYGGA 332 (396)
Q Consensus 325 ~~~ay~~~ 332 (396)
...++...
T Consensus 236 ~~~~~~~~ 243 (306)
T TIGR02056 236 IDIFQGLI 243 (306)
T ss_pred HHHHHHHH
Confidence 76666543
No 25
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=4e-32 Score=263.40 Aligned_cols=256 Identities=18% Similarity=0.159 Sum_probs=186.7
Q ss_pred HHHHHhhccchHHHH---HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCc
Q 016056 101 NAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (396)
Q Consensus 101 ~~~~~l~Rp~~~~~~---~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RP 175 (396)
++|.|++|++++... .+++..|..+|....+..++.. .++.+++.+++++++|++|||+|+|+|+.|+| +||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 567888777766554 5567788888754111112221 34566788899999999999999999998764 899
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHH
Q 016056 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255 (396)
Q Consensus 176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~ 255 (396)
+|+|++|+++++.++.++.++++.+++.+|+....++ +++.++.+.||. +||++.++++..|+.++.++..|+
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~ 151 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW 151 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888776665 456777999996 799999999999988887777776
Q ss_pred HHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHH
Q 016056 256 FIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVA 335 (396)
Q Consensus 256 ~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~ 335 (396)
++. .| . .+...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++++... +..++.....+.
T Consensus 152 ~a~-----~g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~-~~~~~~~~~~~~ 222 (281)
T TIGR01474 152 AAV-----TG-D--LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGG-LYALMILLLALA 222 (281)
T ss_pred HHH-----cC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHH-HHHHHHHHHHHH
Confidence 543 13 2 23233333445568899999999999999999999999999999988755433 333333333333
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHH
Q 016056 336 GATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFY 378 (396)
Q Consensus 336 g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~ 378 (396)
+.....+ ..+.++..+....+.++..++|.+|+++++++|
T Consensus 223 ~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F 262 (281)
T TIGR01474 223 GLIAGLG---PVYYLGLAAAALLLIRQIATLDIRDPENCLKLF 262 (281)
T ss_pred HHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3332222 234455666677788888888887777766654
No 26
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.4e-32 Score=264.24 Aligned_cols=266 Identities=15% Similarity=0.152 Sum_probs=191.4
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC-----CC
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-----PY 173 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~-----p~ 173 (396)
++|.|++.+||+++..++.++++|.++|+....++++.. +++++++++++++++|.+|||+|+|.|..++ ++
T Consensus 3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~ 79 (296)
T PRK05951 3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ 79 (296)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence 688999999999999999999999999875434566533 4667889999999999999999965554444 67
Q ss_pred CccccCccCHHHHHHHHHHHHHHHHHHH----HHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHH
Q 016056 174 LPLASGELSMGTGIAICAGSALLSLALA----FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL 249 (396)
Q Consensus 174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~----~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~ 249 (396)
||+++|++|+++++..+.++..+++.++ ...+++.+.++ +++.++++.||. ||+++|+++ +|++.+++.+|.
T Consensus 80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~--~P~~lky~g-lGe~~v~~~~g~ 155 (296)
T PRK05951 80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMG--PPFFLKYRW-LGEHLVFYAWSH 155 (296)
T ss_pred CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcC--CCcccCCCC-chHHHHHHHHHH
Confidence 9999999999999998877666655443 22355444444 567889999999 999999887 699999999996
Q ss_pred HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016056 250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY 329 (396)
Q Consensus 250 ~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay 329 (396)
.+.+|.+.. .++. .+...+.......+++....+.||++|+|+|++.|+||+|+++|+|++ ++...++..+|
T Consensus 156 ~~vlg~~~~-----~~~~--~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~ 227 (296)
T PRK05951 156 MLVMGLIYV-----WLGN--LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPY 227 (296)
T ss_pred HHHHHHHHH-----HhCc--ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHH
Confidence 666665442 1222 222333334455667778889999999999999999999999999999 66556677777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHH
Q 016056 330 GGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM 379 (396)
Q Consensus 330 ~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~ 379 (396)
+..+........++..+++.+++......+.++.++.|.++.+.+.+++.
T Consensus 228 ~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (296)
T PRK05951 228 VILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFM 277 (296)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHH
Confidence 66554444333344333444444444444455555666555554544443
No 27
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=2e-31 Score=258.20 Aligned_cols=264 Identities=16% Similarity=0.124 Sum_probs=180.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC--CCCcc
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL 176 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~--p~RPl 176 (396)
++++|+|++||++.....++++.|.++|.+.. .++.. +++.+++.+++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 47899999999999999999999999885432 23321 3456788899999999999999999999988 58999
Q ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHHH
Q 016056 177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIP 254 (396)
Q Consensus 177 ~sG~ls~~~a~~~~~~~~~l~l~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~lg 254 (396)
|+|++|+++++.+++++.++|+.++.. +|+.+.....+...+..+.||. ++||+++. +..++...| .++..|
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g 149 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG 149 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999988776 7765433322345567789996 48999975 545555455 555555
Q ss_pred HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016056 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV 334 (396)
Q Consensus 255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~ 334 (396)
+.+.. | . .+...+++...+.+|+.+.....+++|+|+|+++|+||+|+++|++++.+....+..+.......
T Consensus 150 ~~a~~-----g-~--~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~ 221 (279)
T PRK12869 150 YASGT-----G-S--LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL 221 (279)
T ss_pred HHHHh-----C-C--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence 54321 2 2 23233344445567887777777889999999999999999999998887665444333332222
Q ss_pred HHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHccCCChhhHH-HHHHHhHHHH
Q 016056 335 AGATSTLMISKLVTIIGHII-LALMMWLRSRKVDLDNFDSQF-GFYMFLWQLN 385 (396)
Q Consensus 335 ~g~~~~~~~~~~~~~~g~~i-~~~~l~~~~~~~d~~~~~~~~-~f~~~iw~l~ 385 (396)
.+. ...+ ..+.++..+ .+..+..+.+..+.++++.++ .|...+|.+.
T Consensus 222 ~~~-~~~g---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~ 270 (279)
T PRK12869 222 LYL-YYIG---LIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA 270 (279)
T ss_pred HHH-hhcc---HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 222 2222 334433332 233455556666655555443 3444444443
No 28
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=4e-31 Score=258.18 Aligned_cols=265 Identities=13% Similarity=0.053 Sum_probs=183.8
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC--CCCc
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLP 175 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~--p~RP 175 (396)
+++++|+|++||+++....++++.|.++|.+. ..++.. +++++++.+++++++|++|||+|+|+|++|+ |+||
T Consensus 8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp 82 (296)
T PRK04375 8 ATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP 82 (296)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence 57999999999999999999999999998543 223322 4557788999999999999999999999988 5999
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHH
Q 016056 176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQI 253 (396)
Q Consensus 176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~l 253 (396)
+++|++|+++++.+++++.++|+.+++. .|+.+..++.+......++||. ++||+++ ++..++...| .++..
T Consensus 83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l~ 156 (296)
T PRK04375 83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPLI 156 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHHH
Confidence 9999999999999999999899888654 5665554443222334668986 4899995 5655555544 66666
Q ss_pred HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHH
Q 016056 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAV 333 (396)
Q Consensus 254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~ 333 (396)
|+.+.. | . .+...+++.+...+|....+..++++|+|||+++|+||+|+++|++++++.......+.....+
T Consensus 157 g~~a~~-----g-~--~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~ 228 (296)
T PRK04375 157 GWAAVT-----G-S--LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSL 228 (296)
T ss_pred HHHHhC-----C-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHH
Confidence 665421 2 2 2333344455567888888999999999999999999999999999887765433322222222
Q ss_pred HHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHccCCChhhH-HHHHHHhHHH
Q 016056 334 VAGATSTLMISKLVTII-GHIILALMMWLRSRKVDLDNFDSQ-FGFYMFLWQL 384 (396)
Q Consensus 334 ~~g~~~~~~~~~~~~~~-g~~i~~~~l~~~~~~~d~~~~~~~-~~f~~~iw~l 384 (396)
+.......++ .+.+ +.......+.++.+..+.+|++.+ +.|+...|.+
T Consensus 229 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~ 278 (296)
T PRK04375 229 LPVLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL 278 (296)
T ss_pred HHHHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 2111111222 2222 233334455666777777666544 4555555444
No 29
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=5.5e-31 Score=254.97 Aligned_cols=205 Identities=22% Similarity=0.249 Sum_probs=161.1
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCcccc
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~s 178 (396)
++|+|+|++||+++..+.++.+.|.+++.+..++ +.. .++.+++.++.++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3689999999999999999989999887543222 211 34456778888999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHH
Q 016056 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIH 258 (396)
Q Consensus 179 G~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~ 258 (396)
|++++++++.+++++.++|+.+++.+|++.+.++ +++.+++++|+. ++|++++++|+.+|..+|..+..|+...
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a~ 150 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIAV 150 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988888888776555 356677899997 5789888899999998885444554321
Q ss_pred hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056 259 SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324 (396)
Q Consensus 259 ~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 324 (396)
+. .+...+. ..+..++.+++++.||++|+|+|+++|+||+|+++|+++++++....
T Consensus 151 ------~~---~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 151 ------GR---IGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred ------cc---ccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 21 1212121 12234566778899999999999999999999999999988865443
No 30
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=5.4e-31 Score=253.79 Aligned_cols=260 Identities=19% Similarity=0.173 Sum_probs=182.4
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCch--HHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCc
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTP--AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP 175 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~--~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RP 175 (396)
..++.+++++||.+|+.+..++.+|...+.+. +++ .. ++++++.....+.+.|.+|||+|+|+|++|+|+||
T Consensus 10 ~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~---~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 10 LPLRRLLLISRPALWVNTVGTLVTGVWLTGHL---YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc---ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 55778999999999999999999999776432 233 22 33455666788899999999999999999999999
Q ss_pred cccCccCHHHHHHHHHHHHHH----HHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHH
Q 016056 176 LASGELSMGTGIAICAGSALL----SLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (396)
Q Consensus 176 l~sG~ls~~~a~~~~~~~~~l----~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~ 251 (396)
+++|++|+++++.+..++.++ ++.+++..|+..+.+. +++.+++++||. ||+|+|+++++++++. ..+|.+.
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~p~ 159 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYALPL 159 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHHHH
Confidence 999999999998865444333 4556677777665554 467789999999 9999999999988876 3455444
Q ss_pred HHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016056 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG 331 (396)
Q Consensus 252 ~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~ 331 (396)
..+. .+.|.. ..+..+ ....+|..+++++++++|+|+||+.|+||+|+++|+|++.+++..++.++...
T Consensus 160 ~~~~------~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~ 228 (292)
T PRK13595 160 ALPA------LALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL 228 (292)
T ss_pred HHHH------HHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence 3332 122321 112222 33357889999999999999999999999999999999999887766555433
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHHHHHHH
Q 016056 332 AVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVE 388 (396)
Q Consensus 332 ~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~ 388 (396)
..... .+.. +...+.....+..++ .|.+.++.-+.|..|+|--+...
T Consensus 229 ~~~~~--~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g 275 (292)
T PRK13595 229 LWPVS--RLTA---LALWLICGGMALALW-----RRPTPETAHRLYPLSIVTPWIVG 275 (292)
T ss_pred HHHhc--chHH---HHHHHHHHHHHHHHh-----cCCCHHHHhccchHHHHHhHHHH
Confidence 22211 1111 111122222222222 56666666777778777654443
No 31
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=1.4e-30 Score=253.96 Aligned_cols=230 Identities=17% Similarity=0.146 Sum_probs=176.6
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhh--ccCCCC
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDK--INKPYL 174 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~--e~D~--~n~p~R 174 (396)
.++.|++++||+++..++++++.|.++|... ..+++.. +++++++.+++++++|.+|||+|+ |.|+ .++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3688999999999999999999999988542 3345432 456778899999999999999998 5675 456799
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056 175 PLASGELSMGTGIAICAGSALLSLALAF----LSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (396)
Q Consensus 175 Pl~sG~ls~~~a~~~~~~~~~l~l~l~~----~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~ 250 (396)
|+++|++|+++++.++.++.+++++++. ..+++.+.++ +++.+++++||. ||.++|+++ +||+.+++.+|..
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Ys~--~p~~~~~~g-lge~~~~~~~G~~ 153 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LLCIAAAILYTG--GPKPYGYTG-LGELFVGVFFGLV 153 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhcC--CCCccCCCC-cHHHHHHHHHHHH
Confidence 9999999999999888777666555443 3355444443 457778899999 898999988 6999999989855
Q ss_pred HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016056 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG 330 (396)
Q Consensus 251 ~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~ 330 (396)
+..+.+.. ..+. .+...++...+.++|+..+++.||++|+|+|++.|+||+|+++|+++++++...++.++|+
T Consensus 154 ~~~~~~~~-----~~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~ 226 (293)
T PRK06080 154 IVLGTYYL-----QAGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYL 226 (293)
T ss_pred HHHHHHHH-----hcCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHH
Confidence 54443321 1111 2334445555667888899999999999999999999999999999999999999989888
Q ss_pred HHHHHHHHhhhhh
Q 016056 331 GAVVAGATSTLMI 343 (396)
Q Consensus 331 ~~~~~g~~~~~~~ 343 (396)
..+........++
T Consensus 227 ~~~~~~~~~~~~~ 239 (293)
T PRK06080 227 CIVLLALLGLASP 239 (293)
T ss_pred HHHHHHHHhhhhH
Confidence 7665544443443
No 32
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.98 E-value=2.8e-30 Score=252.75 Aligned_cols=206 Identities=19% Similarity=0.224 Sum_probs=162.9
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCc
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RP 175 (396)
+++++|++++||+++..+.++++.|.++|..+ +.++.. +++++++.++.++++|++|||+|+|+|+.|+| +||
T Consensus 11 ~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RP 85 (306)
T PRK13362 11 ASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRV 85 (306)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCC
Confidence 57899999999999999999999999988433 233322 34466788999999999999999999998764 899
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHH
Q 016056 176 LASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254 (396)
Q Consensus 176 l~sG~ls~~~a~~~~~~~~~l~l~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg 254 (396)
+++|++|+++++.+++++.++|+.++ +..|+....++.+..++..++||. ++||+++.++++.|+..+.++..|
T Consensus 86 lpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G 160 (306)
T PRK13362 86 TVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVG 160 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHH
Confidence 99999999999999999988888865 445765544432223345679995 389999999998888777888888
Q ss_pred HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHH
Q 016056 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLC 321 (396)
Q Consensus 255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~ 321 (396)
+.+. ++.. +...+++...+.+|+...+...+++|+|||+++|++|+|+++|++++++..
T Consensus 161 ~~a~------~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~ 219 (306)
T PRK13362 161 YCAV------TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI 219 (306)
T ss_pred HHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence 7653 2222 233444456667899998889999999999999999999999999887743
No 33
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.98 E-value=3.7e-30 Score=249.54 Aligned_cols=263 Identities=15% Similarity=0.071 Sum_probs=178.7
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC--CCCcccc
Q 016056 101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLAS 178 (396)
Q Consensus 101 ~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~--p~RPl~s 178 (396)
|+|+|++||+++..+.++++.|.++|.+.. ..++.. +++++++.+++++++|++|||+|+|+|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 469999999999999999999999985432 123322 4557788999999999999999999999987 5999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHH-HhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHH
Q 016056 179 GELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGL-TGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (396)
Q Consensus 179 G~ls~~~a~~~~~~~~~l~l~l-~~~lg~~~l~l~l~~~~~-l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~ 256 (396)
|++|++++..+++++.++|+.+ .+..|+....++. ++.+ ..++||. .+||++..++++.++..+.++..|+.
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~ 150 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWA 150 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888884 4457776655543 4444 3789995 27999976555544433355555544
Q ss_pred HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016056 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336 (396)
Q Consensus 257 ~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g 336 (396)
+. ++.. +...+++.....+|+........++|+|+|+++|+||+|+++|+|++.+..............+.+
T Consensus 151 a~------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (280)
T TIGR01473 151 AV------TGSI--SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA 222 (280)
T ss_pred Hh------cCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2222 323333444556787777777788999999999999999999999887765433322222222222
Q ss_pred HHhhhhhHHHHHH-HHHHHHHHHHHHHHHHccCC-ChhhH-HHHHHHhHHH
Q 016056 337 ATSTLMISKLVTI-IGHIILALMMWLRSRKVDLD-NFDSQ-FGFYMFLWQL 384 (396)
Q Consensus 337 ~~~~~~~~~~~~~-~g~~i~~~~l~~~~~~~d~~-~~~~~-~~f~~~iw~l 384 (396)
.....++ .|. .+.......+.++.+..+.+ |++.+ +.|+...+.+
T Consensus 223 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~ 270 (280)
T TIGR01473 223 FLGGTGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYL 270 (280)
T ss_pred HHhcccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 2222222 333 34444455667777777766 55433 4444444433
No 34
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.98 E-value=7.8e-30 Score=250.91 Aligned_cols=232 Identities=12% Similarity=0.038 Sum_probs=176.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccC----CCCc
Q 016056 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK----PYLP 175 (396)
Q Consensus 100 l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~----p~RP 175 (396)
++.|++++||++...++++++.|.++|......+++.. ++++++++++.|+++|.+|||+|.+.|+.++ ++|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 67899999999999999999999999865434566533 4567788899999999999999987666554 5799
Q ss_pred cccCccCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHH
Q 016056 176 LASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLIL 251 (396)
Q Consensus 176 l~sG~ls~~~a~~~~~~~~~l~l~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~ 251 (396)
+++|.+++++++..+.++.+++.+ +.+..|+..+.++ +++.+.+++||. ||+++||++ +||+.+++.+|..+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence 999999999999888776666655 5555676555454 578889999999 999999999 79999999999655
Q ss_pred HHHHHHHhhhhhhCCCCCCh--------------HH----HHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhc
Q 016056 252 QIPYFIHSQTYLLGKPFEVT--------------GP----FVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLG 313 (396)
Q Consensus 252 ~lg~~~~~~~~l~g~~~~~~--------------~~----~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG 313 (396)
..+.+.. ++ +...+. .. .++.....++.+..+++.||++|+|+|+++|+||+|+++|
T Consensus 156 v~g~~yv-~t----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG 230 (317)
T PRK13387 156 FLLAVYI-NT----NTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIG 230 (317)
T ss_pred HHHHHHH-hc----CCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEc
Confidence 5554432 11 111110 00 0112334455666789999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016056 314 KEKVLPLCVNMMLLGYGGAVVAGATSTLMI 343 (396)
Q Consensus 314 ~~~a~~l~~~l~~~ay~~~~~~g~~~~~~~ 343 (396)
+|++.++...++..+|+..+........++
T Consensus 231 ~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~ 260 (317)
T PRK13387 231 REKGVVLFAILFYASYLAIAVIVLMGYISP 260 (317)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999987555443333343
No 35
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=3.7e-28 Score=236.89 Aligned_cols=274 Identities=18% Similarity=0.112 Sum_probs=177.1
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc-------
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN------- 170 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n------- 170 (396)
+++++|++++||+++.....+++.|.++|......+++.. +++.++++.++..++|++|||+|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4688999999999988887887788888742112234432 222334445555778999999999999865
Q ss_pred --C--CCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcH----HHHHHHHHHHHHHhheecCCCCccCccccCc--hhH
Q 016056 171 --K--PYLPLASGELSMGTGIAICAGSALLSLALAFLSGS----PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTF--MAP 240 (396)
Q Consensus 171 --~--p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~----~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~--~g~ 240 (396)
| ++||+++|++|+++++.+++++.++|+.++..++. ..+.++ +.+.++++.|+. .||... .+.
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~~~ 152 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPVAQ 152 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccHHH
Confidence 3 48999999999999999999988888887666543 222222 345567778886 344321 233
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHH
Q 016056 241 FTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPL 320 (396)
Q Consensus 241 l~vg~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l 320 (396)
+..++.++.++..|+ +. .|. .+...+....+..+|+.+++++||++|+|||++.|+||+|+++|++++++.
T Consensus 153 l~G~~~~~~~~~~g~-~~-----~g~---~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~ 223 (297)
T PRK12871 153 LLGRTDFTLFPAAGY-LC-----YGQ---PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYW 223 (297)
T ss_pred HHHHHHHHHHHHHHH-HH-----hCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHH
Confidence 333344444444442 21 232 222334444566789999999999999999999999999999999988866
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHH--HhHHHHHHHHHHhhh
Q 016056 321 CVNMMLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYM--FLWQLNYVEYILIHF 394 (396)
Q Consensus 321 ~~~l~~~ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~--~iw~l~~~~y~~~~~ 394 (396)
...+..+.....+ +.....++ ..+....++.+..+.+|.+..+.++++.|-+-|. +.....|+.-+.+-|
T Consensus 224 i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 295 (297)
T PRK12871 224 VTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVSIILDF 295 (297)
T ss_pred HHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5444444332222 22222332 2233333555667888888888888876644332 244555555555544
No 36
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=4.8e-28 Score=236.45 Aligned_cols=232 Identities=14% Similarity=0.026 Sum_probs=176.4
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhccCCCC
Q 016056 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYL 174 (396)
Q Consensus 97 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~n~p~R 174 (396)
+++++.|++.+||+++..+++++++|.++|+....++++.. +++++++++++|.++|.+|||+|++ .|+. +++
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~- 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH- 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence 36788999999999999999999999999975444677543 4667899999999999999999987 6773 332
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056 175 PLASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (396)
Q Consensus 175 Pl~sG~ls~~~a~~~~~~~~~l~l~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~ 250 (396)
...++..+++++...+.++.++++. +.+..|++.+.++ +++.+++++||. ||+++|+++ +||+.+++.+|..
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~--gP~~l~y~g-LGE~~v~l~~G~l 159 (304)
T PRK07419 84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQG--PPFRLGYQG-LGEPLCFLAFGPL 159 (304)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccC--CCcccCCCC-chHHHHHHHHHHH
Confidence 2445555788888777666555544 3444565544444 568889999999 999999999 6999999999966
Q ss_pred HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHH
Q 016056 251 LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYG 330 (396)
Q Consensus 251 ~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~ 330 (396)
+..+.+.. ..+ .++...+...+..++.+..+.+.||++|+|+|+++|+||+|+++|+++++++...+...+|+
T Consensus 160 ~v~g~~yv-----~t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~ 232 (304)
T PRK07419 160 AVAAALYS-----QTP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA 232 (304)
T ss_pred HHHHHHHH-----hcC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence 65655432 122 23434444445566778888999999999999999999999999999999999999989998
Q ss_pred HHHHHHHHhhhhhH
Q 016056 331 GAVVAGATSTLMIS 344 (396)
Q Consensus 331 ~~~~~g~~~~~~~~ 344 (396)
..+........+|.
T Consensus 233 ~~i~~v~~g~~p~~ 246 (304)
T PRK07419 233 LELLPVLLGFWPWT 246 (304)
T ss_pred HHHHHHHHhhhHHH
Confidence 76554444334543
No 37
>PLN02922 prenyltransferase
Probab=99.97 E-value=9.8e-28 Score=235.50 Aligned_cols=236 Identities=17% Similarity=0.137 Sum_probs=172.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhccCCCCc
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP 175 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~n~p~RP 175 (396)
++++.|++.+||+++..+++++++|.++|......+++.. +++++++++++|.++|.+|||+|.+ .|+.++..+.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 4588899999999999999999999999975434667543 5668899999999999999999975 6764322212
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHH---H--hcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHH
Q 016056 176 LASGELSMGTGIAICAGSALLSLALAF---L--SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLI 250 (396)
Q Consensus 176 l~sG~ls~~~a~~~~~~~~~l~l~l~~---~--lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~ 250 (396)
-..| +++++...++++.++++...+ . .+++.+.++ +++++.+++||. ||+++|+++ +||+.+++.+|..
T Consensus 90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--gP~pl~y~g-LGE~~v~i~fG~l 163 (315)
T PLN02922 90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--PPFRLSYKG-LGEPLCFAAFGPL 163 (315)
T ss_pred Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--CCcccccCc-chHHHHHHHHHHH
Confidence 2234 899988877666555543221 1 244444343 578889999999 999999999 6999999999966
Q ss_pred HHHHHHHHhhhhhhCC-CC---CChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHH
Q 016056 251 LQIPYFIHSQTYLLGK-PF---EVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMML 326 (396)
Q Consensus 251 ~~lg~~~~~~~~l~g~-~~---~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~ 326 (396)
++.+.+.. ++...+. .. .++...++..+.+++++.++++.||++|+|+|++.|+||+|+++|+++++++...++.
T Consensus 164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~ 242 (315)
T PLN02922 164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence 55665443 1110000 00 1233344455566788888999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhhhh
Q 016056 327 LGYGGAVVAGATSTLMI 343 (396)
Q Consensus 327 ~ay~~~~~~g~~~~~~~ 343 (396)
.+|+..+........++
T Consensus 243 ~~y~~~i~~v~~~~~p~ 259 (315)
T PLN02922 243 LLYSLLAALGLLKALPL 259 (315)
T ss_pred HHHHHHHHHHHHhhhhH
Confidence 99987665544443443
No 38
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.97 E-value=3.4e-30 Score=239.49 Aligned_cols=280 Identities=15% Similarity=0.109 Sum_probs=206.3
Q ss_pred hhhHHHHHHHHHHHHHhhccchHHHHHH---HHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhh
Q 016056 90 PSFLEVVKRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEI 166 (396)
Q Consensus 90 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~ 166 (396)
+++.+.-+.++++|.|++|.+.++++.+ ++....++|... . ..+.+ --+.++-++.+++++++|++||..|+|+
T Consensus 54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda-g-~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdl 130 (353)
T KOG1381|consen 54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA-G-LLPSI-KMLALFGVGALLMRGAGCTINDLWDKDL 130 (353)
T ss_pred hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC-C-ccchh-HHHHHhcccHHHhccCCceehhhhhhhh
Confidence 3444444567999999999999999855 566777777532 1 11111 1123345788999999999999999999
Q ss_pred hhccCC--CCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHH
Q 016056 167 DKINKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLV 244 (396)
Q Consensus 167 D~~n~p--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg 244 (396)
|++.+| .||+++|++|+++|+.+..+...+|+.+...+|+....++ ..++...+.|+. +||.+++.+++.|
T Consensus 131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLg 203 (353)
T KOG1381|consen 131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLG 203 (353)
T ss_pred hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHh
Confidence 999887 7999999999999999988888999998889998877655 456777889998 8999999999988
Q ss_pred HHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHH
Q 016056 245 ILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNM 324 (396)
Q Consensus 245 ~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l 324 (396)
.+++.-..+||-+. -| ... +...+-+++--..|++.++++++++|.++|.+.|+++.+.++|++...|+.. +
T Consensus 204 ltfnwGAllGw~A~-----~g-~~~-~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~g-f 275 (353)
T KOG1381|consen 204 LTFNWGALLGWCAL-----KG-SLS-PSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSG-F 275 (353)
T ss_pred hhcchhhhhcchhh-----cC-ccC-hhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhh-h
Confidence 76654444454332 12 221 2112222333347899999999999999999999999999999998877753 2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHH-HHHHhHHHHHHHHH
Q 016056 325 MLLGYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFG-FYMFLWQLNYVEYI 390 (396)
Q Consensus 325 ~~~ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~-f~~~iw~l~~~~y~ 390 (396)
-......+..+|..+...| .+..++...+.++..|..++|+||+.+|.. |-.++|.++++.|-
T Consensus 276 ~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~~ 339 (353)
T KOG1381|consen 276 GAAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFSG 339 (353)
T ss_pred hHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHHH
Confidence 2222333455666666554 344557777889999999999999887655 44678888777664
No 39
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.97 E-value=5e-28 Score=234.57 Aligned_cols=222 Identities=14% Similarity=0.050 Sum_probs=168.3
Q ss_pred ccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhc--cCCCCccccCccCH
Q 016056 108 RYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI--NKPYLPLASGELSM 183 (396)
Q Consensus 108 Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~--n~p~RPl~sG~ls~ 183 (396)
||+++..++.++++|.++|.... .+++.. +++++++++++|.++|.+|||+|.+ .|+. .+|.|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999996543 666543 5667889999999999999999984 3543 35789999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHHhcH-----HHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHH
Q 016056 184 GTGIAICAGSALLSLAL----AFLSGS-----PAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254 (396)
Q Consensus 184 ~~a~~~~~~~~~l~l~l----~~~lg~-----~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg 254 (396)
+++...+.++.++++++ .+..++ +.+.+..+++.+.+++||. ||+++|+++ +||+.+++.+|..+..|
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~g-LGE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAG-LGDISVLVFFGPLAVLG 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCc-hHHHHHHHHHHHHHHHH
Confidence 99998887666655444 333453 1332223567888999999 999999999 69999999999666666
Q ss_pred HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016056 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV 334 (396)
Q Consensus 255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~ 334 (396)
.+.. ..+. ++...++..+..++++.++++.||++|+|+|+++|+||+|+++|+|+++++...++..+|+..++
T Consensus 154 ~~yv-----q~~~--~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~ 226 (284)
T TIGR00751 154 TQYL-----QAHR--VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV 226 (284)
T ss_pred HHHH-----hcCC--CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence 4432 1222 23333333444567778889999999999999999999999999999999998888888876555
Q ss_pred HHHHhhhhh
Q 016056 335 AGATSTLMI 343 (396)
Q Consensus 335 ~g~~~~~~~ 343 (396)
.......++
T Consensus 227 ~~~~~~~p~ 235 (284)
T TIGR00751 227 FMLATPISW 235 (284)
T ss_pred HHHHhhchH
Confidence 443333343
No 40
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.96 E-value=7.5e-27 Score=224.01 Aligned_cols=281 Identities=17% Similarity=0.092 Sum_probs=191.8
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhc----cC
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKI----NK 171 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~----n~ 171 (396)
++.+.|++++||+++..++.+++.|.++|......+++. ..+++++++.+++..+|..|||+|.+ .|.. .+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 356889999999999999999999999997654455543 36778899999999999999999974 5642 22
Q ss_pred CCCccccCccCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHH
Q 016056 172 PYLPLASGELSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILM 247 (396)
Q Consensus 172 p~RPl~sG~ls~~~a~~~~~~~~~l~l~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~ 247 (396)
.++-+...+++++..+...+.+...+.+ +....++.-+.++ +++.+.+++||. +|+++++.| +||+.+++.+
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~g-LGEi~~~vff 158 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMG-LGEIFVGVFF 158 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCC-HHHHHHHHHH
Confidence 3556666677788777766554443333 3344555533333 578889999999 899999999 6999999999
Q ss_pred HHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016056 248 GLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327 (396)
Q Consensus 248 g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ 327 (396)
|.....+.+.. + . ..++...++..+..++.+..++..||+||+|+|+++|++|+|+++|++.++.+...++..
T Consensus 159 G~l~v~g~~yi-q----t--~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~ 231 (303)
T COG1575 159 GPLIVLGAYYI-Q----T--GRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHHHH-h----c--ccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence 96555554432 1 1 123333444445556677778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHccCCC--hhhH--HHHHHHhHHHHHHHHHHhh
Q 016056 328 GYGGAVVAGATSTLMISKLVTIIGHIILALMMWLRSRKVDLDN--FDSQ--FGFYMFLWQLNYVEYILIH 393 (396)
Q Consensus 328 ay~~~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~--~~~~--~~f~~~iw~l~~~~y~~~~ 393 (396)
+|++.++.......++..++. .-....+....++.++-+... ...+ ....+.+|.+.++--+++-
T Consensus 232 a~l~~~~~~i~~~~~~~~ll~-ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~ 300 (303)
T COG1575 232 AYLAIVIFVILGLFPVWGLLF-LLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILLS 300 (303)
T ss_pred HHHHHHHHHHHHhchHHHHHH-HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998765544444444443221 112222233333333222111 1122 2233458888877655543
No 41
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=3.9e-27 Score=227.54 Aligned_cols=219 Identities=17% Similarity=0.179 Sum_probs=152.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccC
Q 016056 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG 179 (396)
Q Consensus 100 l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG 179 (396)
+|.+++++||.+|+.+.+++..|+++| ++.+ ++.++ +.++.-....+.+.|.+|||+|+|.|+.|++++.. .|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~--~~~~l---~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLA-GGEI--DWLFV---VGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHH-CCCC--ChHHH---HHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 367899999999999999999999999 3322 23221 11112223444445666999999999999875443 58
Q ss_pred ccCHHHHHHHHHHHHH-----HHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHH
Q 016056 180 ELSMGTGIAICAGSAL-----LSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIP 254 (396)
Q Consensus 180 ~ls~~~a~~~~~~~~~-----l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg 254 (396)
.++++++........+ .++.+....+++.+.++ .++++.++.||. ||+|+|++++.++++.++.+..+..+|
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G 150 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYG 150 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHH
Confidence 8999987444333222 23333333354444333 467888999999 999999999877765554443223444
Q ss_pred HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016056 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV 334 (396)
Q Consensus 255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~ 334 (396)
.+. + ++. .+...++....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.++++..+.
T Consensus 151 ~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~ 222 (282)
T PRK13105 151 LVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA 222 (282)
T ss_pred HHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 322 2 322 23334444556678899999999999999999999999999999999999999988888877654
Q ss_pred HH
Q 016056 335 AG 336 (396)
Q Consensus 335 ~g 336 (396)
.+
T Consensus 223 ~~ 224 (282)
T PRK13105 223 LP 224 (282)
T ss_pred HH
Confidence 33
No 42
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.96 E-value=1.4e-26 Score=224.56 Aligned_cols=226 Identities=12% Similarity=0.025 Sum_probs=166.9
Q ss_pred HHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchh--hhhccCCCCccccCc
Q 016056 103 ISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLPLASGE 180 (396)
Q Consensus 103 ~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e--~D~~n~p~RPl~sG~ 180 (396)
|++.+||+++..+++++++|.++|+...+.+++.. ++++++++++.|.++|.+|||+|.+ .|+.+. . ...++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence 67899999999999999999999975444667543 4567889999999999999999976 476422 1 222333
Q ss_pred cCHHHHHHHHHHHHHHHHH----HHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHH
Q 016056 181 LSMGTGIAICAGSALLSLA----LAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYF 256 (396)
Q Consensus 181 ls~~~a~~~~~~~~~l~l~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~ 256 (396)
.+++++...+.++..++.. +.+..+++.+.++ +++++.++.||. ||+++|+++ +||+.+++.+|..+..+.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt~--gP~~l~y~g-LGE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQG--PPFRLGYQG-LGEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhcC--CCcccCCCC-ccHHHHHHHHHHHHHHHHH
Confidence 4567777666555544444 3444454433343 568889999999 999999999 5999999999965555544
Q ss_pred HHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHHHH
Q 016056 257 IHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAG 336 (396)
Q Consensus 257 ~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g 336 (396)
.. ..+ .++...++..+..++.+.++.+.||++|+|+|++.|+||+|+++|+|++.++...++..+|+..+...
T Consensus 153 yv-----qt~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v 225 (285)
T TIGR02235 153 YA-----QSQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV 225 (285)
T ss_pred HH-----hCC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence 32 122 23434444455667788889999999999999999999999999999999999999999998765544
Q ss_pred HHhhhhhH
Q 016056 337 ATSTLMIS 344 (396)
Q Consensus 337 ~~~~~~~~ 344 (396)
.....+|.
T Consensus 226 ~~~~~p~~ 233 (285)
T TIGR02235 226 IGGFLPWT 233 (285)
T ss_pred HHhhhHHH
Confidence 43334443
No 43
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=5.1e-26 Score=220.88 Aligned_cols=221 Identities=20% Similarity=0.243 Sum_probs=153.8
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccc
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~ 177 (396)
+-+++++++.|+.+......++..+...... .+... .....++.++.+.++|++|||+|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL--LGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH--HcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 3468999999999988877666554321100 11111 2235567889999999999999999999999999988
Q ss_pred cCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhheecCCCCcc-CccccCchhHHHHHHHHH-HHHHHH
Q 016056 178 SGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFL-RWKSHTFMAPFTLVILMG-LILQIP 254 (396)
Q Consensus 178 sG~ls~~~a~~~~~~~~~l~l~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~-rlKr~~~~g~l~vg~~~g-~~~~lg 254 (396)
+++...+.+..+..+...+++.+. ...|++.+.++ +++.++++.||. ||. ++||.|.++|+++|..+| .++..+
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 554444443333334444444442 23366655444 456778999998 555 589999999999999999 444444
Q ss_pred HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHHHHH
Q 016056 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVV 334 (396)
Q Consensus 255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~ 334 (396)
++.. +.. ++...+....+++++.+.++.++|++|+|+|+++|++|+|+++|+|+++++...+..+++...+.
T Consensus 152 ~~~~------~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~ 223 (285)
T PRK12872 152 VYYY------QLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLIL 223 (285)
T ss_pred HHhc------ccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4331 111 22233333344556677889999999999999999999999999999999988888777766554
Q ss_pred HH
Q 016056 335 AG 336 (396)
Q Consensus 335 ~g 336 (396)
..
T Consensus 224 ~~ 225 (285)
T PRK12872 224 GV 225 (285)
T ss_pred HH
Confidence 43
No 44
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-26 Score=220.95 Aligned_cols=267 Identities=15% Similarity=0.188 Sum_probs=182.9
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--C
Q 016056 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y 173 (396)
Q Consensus 96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~ 173 (396)
..+++|+|++++||+......++.+.|+.+|.+. ..++.. +++++++..+..++++++|+++|+|+|++++| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 3478999999999999999999999999999752 233332 45678899999999999999999999999987 8
Q ss_pred CccccCccCHHHHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHH
Q 016056 174 LPLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LIL 251 (396)
Q Consensus 174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~ 251 (396)
||+++|++++++++.+++++.++|+.+. +..|+.+..+++...++..++||.+ +||++.. |+++|..-| .|+
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Pp 162 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPP 162 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeeccccccc
Confidence 9999999999999999999999999887 6778776656554456678899995 7999965 556665555 888
Q ss_pred HHHHHHHhhhhhhCCCCCChHHHHHHHHHH----HHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016056 252 QIPYFIHSQTYLLGKPFEVTGPFVFATAIM----SIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327 (396)
Q Consensus 252 ~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~----~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ 327 (396)
.+||.+.. | ..++..+.++++.|+ ++|+++....+|+ +++|+.++|++-|++.+++.. ..+.+
T Consensus 163 liGwaAvt-----g-~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY------~~AgiPMlPvv~G~~~t~~~I-~~y~~ 229 (304)
T COG0109 163 LIGWAAVT-----G-SISLGAILLFAIIFLWTPPHFWALALKYKDDY------KAAGIPMLPVVKGERRTKRQI-LLYTL 229 (304)
T ss_pred cceeeeee-----C-CCCchHHHHHHHHHHhccHHHHHHHHHHHHHH------HHcCCCcccccccHHHHHHHH-HHHHH
Confidence 88886542 3 233333334443333 5666665544443 899999999999999887754 23333
Q ss_pred HHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-ccCCChhhHHHHHHHhHHHHHHHHHH
Q 016056 328 GYGG-AVVAGATSTLMISKLVTIIGHIILALMMWLRSRK-VDLDNFDSQFGFYMFLWQLNYVEYIL 391 (396)
Q Consensus 328 ay~~-~~~~g~~~~~~~~~~~~~~g~~i~~~~l~~~~~~-~d~~~~~~~~~f~~~iw~l~~~~y~~ 391 (396)
.... .++... .+..+..|.+-..+++..+.+...+ ...+|++..++ +|.+++.|+.-++
T Consensus 230 ~l~~~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~k--lF~~S~~yL~~lf 290 (304)
T COG0109 230 ALAPVSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARK--LFKYSIIYLALLF 290 (304)
T ss_pred HHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH--HHHHHHHHHHHHH
Confidence 2221 122111 1122223443333344444333333 33344444333 5777777766554
No 45
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=6.3e-26 Score=215.47 Aligned_cols=189 Identities=28% Similarity=0.373 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhc--cCCCCccccCccCHHHHHHHHH
Q 016056 114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTGIAICA 191 (396)
Q Consensus 114 ~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~--n~p~RPl~sG~ls~~~a~~~~~ 191 (396)
.+..+++.|...+... ..++.. .+.+.+++++.+.++|.+||+.|+|+|+. |+|+||+++|+++++++...+.
T Consensus 3 ~~~~~~l~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~ 77 (257)
T PF01040_consen 3 LSFLPVLAGLALASGG--PFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFAL 77 (257)
T ss_pred HHHHHHHHHHHHHHcC--CCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHH
Confidence 3455666664444332 233322 34455666799999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCh
Q 016056 192 GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVT 271 (396)
Q Consensus 192 ~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~~~~~l~g~~~~~~ 271 (396)
++.++++.+++..+++.+.+. +++.+.++.|| ||+|+||+++++++++++.++..+..+++.. ++. .+
T Consensus 78 ~~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~ 145 (257)
T PF01040_consen 78 ILLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA------GGD--PP 145 (257)
T ss_pred HHHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc------CCc--cc
Confidence 999999998888887766554 45666779999 6788999998899999998886666665432 222 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHH
Q 016056 272 GPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLP 319 (396)
Q Consensus 272 ~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~ 319 (396)
.+.+....+..++.......+|++|+|+|++.|++|+|+++|+++++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 233333333355666777888999999999999999999999999987
No 46
>PLN02776 prenyltransferase
Probab=99.95 E-value=3e-25 Score=218.48 Aligned_cols=261 Identities=14% Similarity=0.068 Sum_probs=172.6
Q ss_pred hhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCccccCccCH
Q 016056 106 VTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSM 183 (396)
Q Consensus 106 l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RPl~sG~ls~ 183 (396)
++||+.....+++.+.|+++|.+..+ ++. .+++.+++++++.+++|++||++|+|+|++|+| +||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 57899999999999999999854333 222 145567899999999999999999999999875 99999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHHHHHHHhhh
Q 016056 184 GTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIPYFIHSQT 261 (396)
Q Consensus 184 ~~a~~~~~~~~~l~l~l-~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~lg~~~~~~~ 261 (396)
++|+.+++++.++|+.+ ++.+|+.+..++.+..++....||. +||++.+ +.++|...| .++.+||.+..
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avt-- 146 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAAAS-- 146 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHHHc--
Confidence 99999999998888855 5667877766653223334568996 8999976 568888888 78888886642
Q ss_pred hhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhc--cccHHHHHHHHHHHHHHHHHHHHHHh
Q 016056 262 YLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLG--KEKVLPLCVNMMLLGYGGAVVAGATS 339 (396)
Q Consensus 262 ~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG--~~~a~~l~~~l~~~ay~~~~~~g~~~ 339 (396)
| .. +...+++...+.+|+........+.|.|||+++|++++|+.-+ ++.++.+......+..+..+..+. .
T Consensus 147 ---g-~~--~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~-g 219 (341)
T PLN02776 147 ---G-QL--DAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDW-G 219 (341)
T ss_pred ---C-CC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 2 22 2233444455678888766777778888999999999999774 344443322222111111111111 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHhHHHHHHHHHH
Q 016056 340 TLMISKLVTIIGHIILALMMWLRSRKVDLDNFDSQFGFYMFLWQLNYVEYIL 391 (396)
Q Consensus 340 ~~~~~~~~~~~g~~i~~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~y~~ 391 (396)
..++ ..+..+..+...++.+..+-.+.+|.+.. -.+|.+++.|+.-++
T Consensus 220 ~~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~a--r~~F~~Sl~yL~~l~ 267 (341)
T PLN02776 220 VTSS--PFALEAALLTAYLAASAASFYREPTNANA--RKMFHGSLLYLPAFM 267 (341)
T ss_pred hhhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHH--HHHHHHHHHHHHHHH
Confidence 0111 23334444444455555555554443332 234566666655443
No 47
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=7.5e-25 Score=212.03 Aligned_cols=218 Identities=20% Similarity=0.240 Sum_probs=140.7
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCC-CchHHHHHHHHHHHHH--HHHHHHHhhhhhhhchhhhhccCCC
Q 016056 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQ--IFMNISLCSLNQICDVEIDKINKPY 173 (396)
Q Consensus 97 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~--~l~~~a~~~iNd~~D~e~D~~n~p~ 173 (396)
.++++.++++.||+++..++.+++.|.++|....++ +++.. +++++. +..+.+.|++|||+|+|+|+.|+++
T Consensus 5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk 79 (282)
T PRK12875 5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPKK 79 (282)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence 367889999999999999999999999998654322 33321 111221 2344556778999999999999876
Q ss_pred CccccCccCH---HHHHHHH-HHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHH
Q 016056 174 LPLASGELSM---GTGIAIC-AGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGL 249 (396)
Q Consensus 174 RPl~sG~ls~---~~a~~~~-~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~ 249 (396)
+. |+... +.+.... +....+++.+....++....+ ++..+++.+.||. ||+|+|++++.+..+.|+. ..
T Consensus 80 ~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~-~~ 152 (282)
T PRK12875 80 DR---EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY-IL 152 (282)
T ss_pred cC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcC--CCccchhccHHHHHHHHHH-HH
Confidence 54 22212 2222111 223334444444444332222 2456778899999 9999999997554443332 22
Q ss_pred HHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016056 250 ILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGY 329 (396)
Q Consensus 250 ~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay 329 (396)
++..+++.. .+ +.+...++ +...+|+.+++++||++|+|+|++.|+||+|+++|++++++++..+..++.
T Consensus 153 ~~~~~y~~~------tg--~~~~~~l~--~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~ 222 (282)
T PRK12875 153 PGVAAYALV------SG--SLPPLLAV--AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAA 222 (282)
T ss_pred HHHHHHHHH------cC--CCcHHHHH--HHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHH
Confidence 333333221 21 12333322 223578899999999999999999999999999999999988777776666
Q ss_pred HHHHHHH
Q 016056 330 GGAVVAG 336 (396)
Q Consensus 330 ~~~~~~g 336 (396)
......+
T Consensus 223 ~~~~~~~ 229 (282)
T PRK12875 223 AAFAAVD 229 (282)
T ss_pred HHHHHHH
Confidence 5544433
No 48
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=3.7e-24 Score=207.32 Aligned_cols=177 Identities=23% Similarity=0.227 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecC
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~ 225 (396)
+.+.+...++|++|||+|+|+|++|+|+||.+ +++.+..++++..++|+.+++..|++. ++ +++.+.+++||.
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS~ 137 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhcC
Confidence 44567889999999999999999999999986 788899999999999999998888643 33 457778999997
Q ss_pred CC----CccCccccCchhHHHHHHHHHHHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Q 016056 226 PL----PFLRWKSHTFMAPFTLVILMGLILQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDK 301 (396)
Q Consensus 226 ~l----pp~rlKr~~~~g~l~vg~~~g~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~ 301 (396)
++ .|+|+|+++.+||+.+++.||..+..+. +.. .+ .+. .......+.....++++.+||++|+|||+
T Consensus 138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~~-~~---~~~-~~~~i~l~~~~~l~~~~iindirDiEGDr 208 (307)
T PRK13591 138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GSY-CG---SLI-PVGLIFLFFGVKLFINSCVYDFKDVKGDT 208 (307)
T ss_pred CCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hhh-hh---hHH-HHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 31 2448899999999999999995332211 000 01 010 11111111112235667899999999999
Q ss_pred HcCCccchhhhccccHHHHHHHHHHHHHHHHHHHHHH
Q 016056 302 AFGMQTLCVLLGKEKVLPLCVNMMLLGYGGAVVAGAT 338 (396)
Q Consensus 302 ~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~~~~~g~~ 338 (396)
+.|++|+|+++|+++++++...+...+|+..++....
T Consensus 209 ~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~ 245 (307)
T PRK13591 209 LAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF 245 (307)
T ss_pred HcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888765554433
No 49
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=3e-23 Score=199.45 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 016056 140 GVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT 219 (396)
Q Consensus 140 ~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l 219 (396)
+.+++++++++..+++|++|||+|+|+|++|+|+||+|||++|+++++.+++++.++++.++... . .. +...++
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-~----i~-i~~~~i 120 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-M----NN-VGWFLF 120 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-H----HH-HHHHHH
Confidence 34556677788899999999999999999999999999999999999999988877777665444 1 11 122333
Q ss_pred hhee-----cCCCCccCccccCchhHHHHHHHHHHHHHHH--HHHH-hhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 016056 220 GAAY-----SVPLPFLRWKSHTFMAPFTLVILMGLILQIP--YFIH-SQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLL 291 (396)
Q Consensus 220 ~~~Y-----s~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg--~~~~-~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 291 (396)
.+.| +. ++|+.++.||+.++...|.++..| ++.. .+....|.+. .....+++.+...+.++++|+.
T Consensus 121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~ 194 (299)
T PRK13592 121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC 194 (299)
T ss_pred HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 4555 65 589999999999999888665444 1110 0011122111 1111122223334557889999
Q ss_pred HhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHHHHH
Q 016056 292 KDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLGYGG 331 (396)
Q Consensus 292 ~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay~~ 331 (396)
+|++| |||++ |.+|+|+.+|.|++.++..++..++.+.
T Consensus 195 KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 195 RKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred HhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHH
Confidence 99999 88886 5999999999999999877776665543
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=2.3e-20 Score=181.52 Aligned_cols=148 Identities=24% Similarity=0.230 Sum_probs=114.8
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc--CCCCc
Q 016056 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYLP 175 (396)
Q Consensus 98 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n--~p~RP 175 (396)
+++++|+|++||++|.++.+.+.. .+++.... +.. .+...++++++.+++.+++|++||++|+|+|++| ||+||
T Consensus 9 ~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~~~-~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RP 84 (295)
T PRK12324 9 NLLAGYLKLLRPKQWIKNLFVFAA-PIFAGNLL-NPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRP 84 (295)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHH-HHHHHhhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCC
Confidence 578999999999999999876543 34443211 111 1122445666778889999999999999999997 67999
Q ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHHHH
Q 016056 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQIPY 255 (396)
Q Consensus 176 l~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~lg~ 255 (396)
+++|++++++++.++.++.++|+.+++.+|+....+. +..+++.++||. ++|+++.+++++++..++..+..|.
T Consensus 85 lasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G~ 158 (295)
T PRK12324 85 IASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAGG 158 (295)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888887655443 456777889997 5899999999998877765555554
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.87 E-value=4.1e-20 Score=190.99 Aligned_cols=189 Identities=22% Similarity=0.221 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc--CCC
Q 016056 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPY 173 (396)
Q Consensus 96 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n--~p~ 173 (396)
.+.++++|++++||++|.++.+.++ +.+.+.. ..+ ...+...++++++..++.+++|++||++|+|+|++| ||+
T Consensus 187 ~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~ 262 (479)
T PRK08238 187 RPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR 262 (479)
T ss_pred CchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence 4457899999999999999988744 6666632 222 222223556778888999999999999999999999 569
Q ss_pred CccccCccCHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHHHHHHH
Q 016056 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMGLILQI 253 (396)
Q Consensus 174 RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g~~~~l 253 (396)
||++||++|+++|+.++.++.++|+.+++.+|+..+ +.++..+++.++||. ++||+++++++++|+.++..+..
T Consensus 263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~-~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~ 336 (479)
T PRK08238 263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAFL-LVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIA 336 (479)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999888887443 333567777889997 58999999999999887766666
Q ss_pred HHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCC
Q 016056 254 PYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGM 305 (396)
Q Consensus 254 g~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~ 305 (396)
|+.+. + ...+.+++. +..++.....+.|...|.++++..|.
T Consensus 337 G~~a~------~--~~~s~wll~---~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 337 GAAAI------G--VALSFWLLA---FSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHh------c--cCHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 65431 2 122323222 22233445667888888888877775
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.62 E-value=8e-16 Score=147.05 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=140.4
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhccCC--CCcc
Q 016056 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL 176 (396)
Q Consensus 99 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n~p--~RPl 176 (396)
-++.|+||.||+--...+++...|+++|.+.. +++ .++.+.++..+..++.|.+||+++.+.|..++| .||+
T Consensus 93 ~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rpl 166 (409)
T KOG1380|consen 93 YARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPL 166 (409)
T ss_pred hHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccccc
Confidence 47899999999988888888888998886542 222 245577899999999999999999999999987 8999
Q ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH-HHHHHH
Q 016056 177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG-LILQIP 254 (396)
Q Consensus 177 ~sG~ls~~~a~~~~~~~~~l~l~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g-~~~~lg 254 (396)
++|++++.+|+.++.+....|+.+.++ +|+....++..=.++.+++|+- +||... .|..+|.+.| +|+.+|
T Consensus 167 v~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihi-inTWvGavVGAIPPLMG 239 (409)
T KOG1380|consen 167 VRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHI-INTWVGAVVGAIPPLMG 239 (409)
T ss_pred ccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhh-hhhHHHHHhccCCccch
Confidence 999999999999998888888776544 6766554443223445667874 899874 4556666666 888899
Q ss_pred HHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHH--HHHHHhCCChHHHHHcCCccchhhhc---cccHHHHHHHHHHHHH
Q 016056 255 YFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFV--NGLLKDLPDVEGDKAFGMQTLCVLLG---KEKVLPLCVNMMLLGY 329 (396)
Q Consensus 255 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~--~~~~~d~~D~egD~~~G~~Tlpv~lG---~~~a~~l~~~l~~~ay 329 (396)
|.+.. | ..+ + ..+++......|.+- ..+..++| ++..+.|.+++++.-- .+.+.+....++.+.|
T Consensus 240 wAAas-----g-~l~-~-ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~ 309 (409)
T KOG1380|consen 240 WAAAS-----G-LLD-P-GAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY 309 (409)
T ss_pred hhhhc-----c-CCC-c-cHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence 86542 2 111 1 122222222334221 12223332 2347999999988642 2334444444444443
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.51 E-value=2.5e-14 Score=131.13 Aligned_cols=231 Identities=13% Similarity=0.087 Sum_probs=157.5
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhch--hhhhccCCCC
Q 016056 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKINKPYL 174 (396)
Q Consensus 97 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~--e~D~~n~p~R 174 (396)
..+.+.|+-..||+....+..++.+|.++|++....-++... .+.++.++++..+.++|.+|.|+|. .+|++...+|
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddr 136 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDR 136 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccch
Confidence 367899999999999999999999999999764322233322 2445667778899999999999996 6898887899
Q ss_pred ccccCccCHHHHHHHHHHHHHHHHHH---HHHhcHH---HHHHHHHHHHHHhheecCCCCccCccccCchhHHHHHHHHH
Q 016056 175 PLASGELSMGTGIAICAGSALLSLAL---AFLSGSP---AVLCAVIAWGLTGAAYSVPLPFLRWKSHTFMAPFTLVILMG 248 (396)
Q Consensus 175 Pl~sG~ls~~~a~~~~~~~~~l~l~l---~~~lg~~---~l~l~l~~~~~l~~~Ys~~lpp~rlKr~~~~g~l~vg~~~g 248 (396)
.+++..+.+.++..++..+..+|... ...+++. .+.+.-+.++--.++|+.+. .+|+.. +|.+++-+.+|
T Consensus 137 tlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggi---gfkyia-lgdliili~fg 212 (359)
T KOG4581|consen 137 TLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGI---GFKYIA-LGDLIILILFG 212 (359)
T ss_pred hHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEeccc---ceEEEe-ccCEEEEEeec
Confidence 99999999999888887776665443 2233332 22221133455567999854 578776 57777766777
Q ss_pred HH-HHHHHHHHhhhhhhCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHH
Q 016056 249 LI-LQIPYFIHSQTYLLGKPFEVTGPFVFATAIMSIYAFVNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLL 327 (396)
Q Consensus 249 ~~-~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~ 327 (396)
.+ +.+.+.. ++ | ..++.+ ... .+...+-+-++.+.|+.+|.|.||++|+-|+++.+|+..+-.++..++..
T Consensus 213 piavlfaf~~--q~---g-~l~~~~-l~y-aiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~ 284 (359)
T KOG4581|consen 213 PIAVLFAFAI--QT---G-HLAIFP-LGY-AIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFA 284 (359)
T ss_pred hHHHHHHHHH--hc---C-ceeEEe-ehh-eeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHH
Confidence 32 2222211 11 2 222211 101 01112334567789999999999999999999999998887777777777
Q ss_pred HHHHHHHHHHHhh
Q 016056 328 GYGGAVVAGATST 340 (396)
Q Consensus 328 ay~~~~~~g~~~~ 340 (396)
-|....+.+..+.
T Consensus 285 py~lf~i~~~~~s 297 (359)
T KOG4581|consen 285 PYLLFFIFALHCS 297 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 8877666554443
No 54
>PRK13591 ubiA prenyltransferase; Provisional
Probab=92.34 E-value=0.57 Score=46.22 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=36.3
Q ss_pred hhhhhhchhhhhccCC-CCccccCccCHHHHHHHHHHHHHH---HHHHHHHhc-----HHHHHHHHHHHHHHhheecC
Q 016056 157 SLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL---SLALAFLSG-----SPAVLCAVIAWGLTGAAYSV 225 (396)
Q Consensus 157 ~iNd~~D~e~D~~n~p-~RPl~sG~ls~~~a~~~~~~~~~l---~l~l~~~lg-----~~~l~l~l~~~~~l~~~Ys~ 225 (396)
.+||+.|.|.|+.++. .-|+.=| ++.+..+...+.++ ..+++..+| +...+.+++.+++..+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 6899999999999865 4454334 33433333222221 122222222 22233344567778889998
No 55
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=89.46 E-value=3.4 Score=40.62 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHH
Q 016056 144 AVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAIC 190 (396)
Q Consensus 144 ~~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~ 190 (396)
..+......+..+..|+..|.|+|+.|+++-+.+ ++..+.+..+.
T Consensus 181 ~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l~ 225 (303)
T COG1575 181 PSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKLY 225 (303)
T ss_pred HHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHHH
Confidence 3455566777888899999999999998854432 34444444443
No 56
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=89.37 E-value=4.3 Score=40.04 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=27.1
Q ss_pred HHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHH
Q 016056 150 FMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAG 192 (396)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~ 192 (396)
+........||+.|+|+|+.++++ .++ -++.++.+..+...
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~-TL~-v~lG~~~a~~ly~~ 225 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKR-SPI-VRLGTKRGAQLLPW 225 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCc-cee-eeechHhHHHHHHH
Confidence 556777889999999999998763 222 14455555544433
No 57
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=88.25 E-value=2.3 Score=42.20 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccCCC-CccccCccCHHHHHHHHHHHHHH
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINKPY-LPLASGELSMGTGIAICAGSALL 196 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~p~-RPl~sG~ls~~~a~~~~~~~~~l 196 (396)
+...+........||+.|+|+|+.++++ -|. ++.++.+..+..++.++
T Consensus 196 lp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~ 244 (317)
T PRK13387 196 LPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYA 244 (317)
T ss_pred HHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHH
Confidence 4445666777889999999999998753 232 45555555554443333
No 58
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=88.14 E-value=5.7 Score=38.34 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhhhhchhhhhccCC-CCccccCc
Q 016056 147 AQIFMNISLCSLNQICDVEIDKINKP-YLPLASGE 180 (396)
Q Consensus 147 ~~~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~ 180 (396)
..++.......+||..|+|.|+.++. .-|..-|+
T Consensus 169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 33455666778899999999998653 44554444
No 59
>PLN02922 prenyltransferase
Probab=88.09 E-value=2.5 Score=41.89 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHH
Q 016056 148 QIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAG 192 (396)
Q Consensus 148 ~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~ 192 (396)
..+........||+.|+|+|+.++++.... ++.++.+..+...
T Consensus 197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v--~lG~~~a~~l~~~ 239 (315)
T PLN02922 197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLV--RLGTEKGSRVVRW 239 (315)
T ss_pred HHHHHHHHHHHccCcchhhHHHcCccceee--EEChHHHHHHHHH
Confidence 345566788899999999999987643221 4455555544433
No 60
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=87.70 E-value=3.4 Score=40.38 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHHHHHhc
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSG 205 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~lg 205 (396)
++..+...+...+||+.|.|.||.++. |.++. ++.++.+..++.++.+++.++...++
T Consensus 167 ~~~~~~~~a~~ii~~irDie~Dr~~G~-~Tlpv-~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 167 AAFFLWGMASHAFGAVQDVVADREAGI-ASIAT-VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHhCcchHhHHHcCC-ccchH-HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455778889999999999998754 23332 56677777777666666655443344
No 61
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=85.11 E-value=11 Score=36.89 Aligned_cols=45 Identities=11% Similarity=-0.076 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHH
Q 016056 149 IFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSAL 195 (396)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~ 195 (396)
.+...+....||+.|+|+|+.+.++ .++ -++.++.+..+...+..
T Consensus 171 gl~~~~iL~~Nn~rD~e~D~~~Gk~-TL~-v~lG~~~a~~l~~~l~~ 215 (285)
T TIGR02235 171 GLATTLILFCSHFHQVEDDLAHGKR-SPV-VRLGTKLAAKIVPWVIS 215 (285)
T ss_pred HHHHHHHHHhcCCccchhHHHcCCc-cee-heecHHhHHHHHHHHHH
Confidence 3567778889999999999998653 222 14555665555444333
No 62
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=83.97 E-value=13 Score=36.37 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccCC-CCccccCccCHHHHHHHHHHHHHHHHH
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALLSLA 199 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~ls~~~a~~~~~~~~~l~l~ 199 (396)
++..+...+...+||+.|+|.|+..+. .-|. ++.++.+..+..++.+++..
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~ 223 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAA 223 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHH
Confidence 444567777889999999999997643 3333 44555555555444444433
No 63
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=83.22 E-value=13 Score=36.03 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhccC-CCCccccCc
Q 016056 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (396)
Q Consensus 145 ~l~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG~ 180 (396)
.++.++.+..-..+|++.|+|.|+..+ |.-|..-|+
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 455667777888899999999999764 466665664
No 64
>PRK13592 ubiA prenyltransferase; Provisional
Probab=82.71 E-value=27 Score=34.43 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCChHHHHHcCCccchhhhcc---ccHHHHHHHHHHH
Q 016056 284 YAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK---EKVLPLCVNMMLL 327 (396)
Q Consensus 284 ~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~---~~a~~l~~~l~~~ 327 (396)
.+.+-.++||+.|+|-|+. ++..-|+-=|. +.++.....+..+
T Consensus 58 ~~~~gniiNDy~D~EIDrI-N~P~RPLPsG~VS~~~A~~~si~L~~~ 103 (299)
T PRK13592 58 FWMILRIADDFKDYETDRR-LFPHRALPSGRVKKKDLAIALSFIVAV 103 (299)
T ss_pred HHHHhHHHHHHhhHHHhhh-cCCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 3445678999999999954 57777776664 3444444344333
No 65
>PLN00012 chlorophyll synthetase; Provisional
Probab=81.25 E-value=7.9 Score=39.38 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhhhhchhhhhcc-CCCCccccCc
Q 016056 149 IFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (396)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n-~p~RPl~sG~ 180 (396)
.+...+....||+-|+|.|+.. ++.-|+.-|.
T Consensus 262 ~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 262 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 4566678889999999999976 4556665554
No 66
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=81.04 E-value=7.1 Score=38.60 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhhhchhhhhccC-CCCccccCc
Q 016056 150 FMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (396)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG~ 180 (396)
+...+....||+.|+|.|+..+ +.-|+.-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 4455668899999999999864 455554443
No 67
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=80.80 E-value=7.7 Score=37.72 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccCC-CCccccCccCHHHHHHHHHHHH
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSA 194 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~ls~~~a~~~~~~~~ 194 (396)
+...+........||+.|+|.|+.++. .-|. ++..+.+..+...+.
T Consensus 175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~ 221 (293)
T PRK06080 175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALL 221 (293)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHH
Confidence 334456677778999999999998754 3333 444555444443333
No 68
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=80.22 E-value=22 Score=34.48 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (396)
Q Consensus 284 ~~~~~~~~~d~~D~egD~~~G~-~Tlpv~lG~ 314 (396)
...+...+||+-|+|-|+++-+ +.-|..-|+
T Consensus 59 ~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 59 ARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 3445678999999999998866 456666664
No 69
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=80.18 E-value=20 Score=34.92 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHH
Q 016056 149 IFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSA 194 (396)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~ 194 (396)
.+...+....||..|+|.|+.+.++.. + -++.++.+..+...+.
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl-~-v~lG~~~a~~l~~~l~ 217 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKNTL-A-VRLGDARTRMYHQGLL 217 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCEee-h-hhcchHhHHHHHHHHH
Confidence 345567778999999999998865322 2 2455565555544333
No 70
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=80.11 E-value=14 Score=35.69 Aligned_cols=30 Identities=20% Similarity=0.063 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016056 284 YAFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314 (396)
Q Consensus 284 ~~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~ 314 (396)
...+-..+||+-|+|.|++. ++.-|..-|+
T Consensus 49 ~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 49 ASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 34455789999999999988 7777877775
No 71
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=80.07 E-value=8.2 Score=38.00 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhhhhchhhhhccCC-CCccccCccCHHHHHHHH
Q 016056 149 IFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAIC 190 (396)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~ls~~~a~~~~ 190 (396)
.+...+....||+.|+|.|+.++. .-|.. +.++.+....
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~---lG~~~a~~~~ 232 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVA---FGIETAAWIC 232 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCcCcchh---cChHHHHHHH
Confidence 456667788999999999998754 44443 3344444433
No 72
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=79.98 E-value=13 Score=35.93 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhccC-CCCccccC
Q 016056 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASG 179 (396)
Q Consensus 145 ~l~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG 179 (396)
.+..++.+..-..+||..|+|.|+..+ +.-|+.-|
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 344456667778899999999998765 45565555
No 73
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=79.90 E-value=8.3 Score=37.46 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhccCC-CCccccCc
Q 016056 145 VVAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGE 180 (396)
Q Consensus 145 ~l~~~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~ 180 (396)
.+..++.+..-...|++.|+|.|+.++. .-|+.-|.
T Consensus 171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 4455667777788999999999998653 45554453
No 74
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=78.67 E-value=9.2 Score=37.05 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=21.4
Q ss_pred HHHHHHhhhhhhhchhhhhccCC-CCccccC
Q 016056 150 FMNISLCSLNQICDVEIDKINKP-YLPLASG 179 (396)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG 179 (396)
+...+....||+.|+|.|+.+++ .-|+.=|
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG 202 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIG 202 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEc
Confidence 44556788999999999998754 4454334
No 75
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=77.11 E-value=15 Score=36.20 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccCC
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINKP 172 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~p 172 (396)
+..++...+...+||+.|+|.|+.++.
T Consensus 189 ~~~~~~~~~~~l~~di~D~egD~~~Gi 215 (308)
T PRK12887 189 LFVLVFTFAIAIFKDIPDMEGDRQYQI 215 (308)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHcCC
Confidence 344566778888999999999998764
No 76
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=76.44 E-value=15 Score=36.10 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCChHHHHHc-CCccchhhhcc
Q 016056 285 AFVNGLLKDLPDVEGDKAF-GMQTLCVLLGK 314 (396)
Q Consensus 285 ~~~~~~~~d~~D~egD~~~-G~~Tlpv~lG~ 314 (396)
..+...+||+-|+|.|+++ .++.=|..=|+
T Consensus 59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~ 89 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGV 89 (295)
T ss_pred HHHHHHHHhHHHHHhhccCCCCCCCCCCCCc
Confidence 4456789999999999986 33444444443
No 77
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=75.09 E-value=13 Score=37.16 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccCC-CCccccC
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASG 179 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG 179 (396)
+...+...+...+||+.|+|.|+..+. .-|+.=|
T Consensus 187 ~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G 221 (331)
T PRK12392 187 GLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221 (331)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence 344566777888999999999998754 4444333
No 78
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=73.97 E-value=40 Score=33.14 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccC-CCCccccCc
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG~ 180 (396)
+..++.+..-...||+.|+|.|+.++ +.-|+.-|+
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 44566677888999999999999865 456665565
No 79
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=73.38 E-value=46 Score=32.41 Aligned_cols=36 Identities=17% Similarity=0.027 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhccC-CCCccccCc
Q 016056 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (396)
Q Consensus 145 ~l~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG~ 180 (396)
.+...+.+.+-..+|++.|+|.|+..+ +.-|+.-|.
T Consensus 165 ~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 165 GLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 345556677788999999999999764 445554443
No 80
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=73.34 E-value=11 Score=37.02 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhccC-CCCccccC
Q 016056 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASG 179 (396)
Q Consensus 145 ~l~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG 179 (396)
.++.++.+.+-.++|+..|+|.|++.+ +.-|+.=|
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 446677777888999999999998764 35555444
No 81
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=73.25 E-value=12 Score=36.68 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhcc-CCCCccccCc
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n-~p~RPl~sG~ 180 (396)
+..++-+..-..+|++.|+|.|+.. .|.-|+.-|.
T Consensus 169 ~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 169 LAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 4444555566678889999999865 4566666565
No 82
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=73.12 E-value=18 Score=33.69 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCChHHHHHc-CCccchhhhcc
Q 016056 283 IYAFVNGLLKDLPDVEGDKAF-GMQTLCVLLGK 314 (396)
Q Consensus 283 l~~~~~~~~~d~~D~egD~~~-G~~Tlpv~lG~ 314 (396)
+...+....||+.|.|.|+.. +++.-|..-|+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~ 66 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR 66 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence 344556789999999999996 45555665554
No 83
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=72.70 E-value=48 Score=32.10 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhhhhhchhhhhccC-CCCccccCc
Q 016056 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (396)
Q Consensus 144 ~~l~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG~ 180 (396)
..+..++-+..-...|++.|+|.|+..+ +.-|+.-|.
T Consensus 167 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 167 LFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 3455566677777889999999999765 455665554
No 84
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=71.50 E-value=14 Score=35.67 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhhhhhchhhhhccC-CCCccccC
Q 016056 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASG 179 (396)
Q Consensus 147 ~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG 179 (396)
..++.+.+-..+||+.|+|.|+..+ +.-|+.-|
T Consensus 162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G 195 (279)
T PRK09573 162 CAFFSTWSREIVKDIEDIEGDLKENVITLPIKYG 195 (279)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhh
Confidence 3445566777889999999999754 45565444
No 85
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=70.92 E-value=77 Score=30.98 Aligned_cols=30 Identities=20% Similarity=0.094 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056 285 AFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (396)
Q Consensus 285 ~~~~~~~~d~~D~egD~~~G~-~Tlpv~lG~ 314 (396)
..+-..+||+.|+|-|++.-+ +.-|..-|+
T Consensus 58 ~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 58 RGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 334568999999999998765 567777775
No 86
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=69.40 E-value=79 Score=30.39 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016056 285 AFVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314 (396)
Q Consensus 285 ~~~~~~~~d~~D~egD~~~G~~Tlpv~lG~ 314 (396)
..+-..+||+-|+|-|+.. ++.=|..-|+
T Consensus 51 ~~~~~~~Nd~~D~~iD~~~-~~~Rpl~~G~ 79 (276)
T PRK12882 51 TGAGNAINDYFDREIDRIN-RPDRPIPSGA 79 (276)
T ss_pred HHHHHHHHHHhhhcccccc-CCCCCcCCCC
Confidence 4445789999999999964 4777777775
No 87
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=67.55 E-value=30 Score=33.88 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=24.4
Q ss_pred HHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHH
Q 016056 150 FMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTG 186 (396)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a 186 (396)
+........||+.|+|.|+.+.++ .++. ++.++.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~-Tlav-~lG~~~a 216 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIP-TLAV-IFGRRGA 216 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCe-eeee-eEcHhhH
Confidence 445677889999999999988653 2222 5555665
No 88
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=64.90 E-value=1.1e+02 Score=29.70 Aligned_cols=31 Identities=10% Similarity=-0.072 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (396)
Q Consensus 284 ~~~~~~~~~d~~D~egD~~~G~-~Tlpv~lG~ 314 (396)
...+-..+||+-|+|-|++..+ +.=|..-|+
T Consensus 48 ~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 79 (279)
T PRK12869 48 ASGGSAAFNHGIERDIDKVMSRTSKRPTPVGL 79 (279)
T ss_pred HHHHHHHHhchHhcCCCCCCCCCCCCCcCCCC
Confidence 3445678999999999998654 445554554
No 89
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=64.46 E-value=33 Score=33.51 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhccC-CCCccccCcc
Q 016056 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL 181 (396)
Q Consensus 145 ~l~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG~l 181 (396)
.+..++.+.+-..+|++.|+|.|+..+ +.-|+.-|+-
T Consensus 172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~ 209 (290)
T PRK12870 172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRY 209 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccc
Confidence 455677888889999999999999765 3445544433
No 90
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=64.00 E-value=41 Score=32.41 Aligned_cols=28 Identities=21% Similarity=0.019 Sum_probs=21.3
Q ss_pred HHHHHHHhCCChHHHHHcCCccchhhhcc
Q 016056 286 FVNGLLKDLPDVEGDKAFGMQTLCVLLGK 314 (396)
Q Consensus 286 ~~~~~~~d~~D~egD~~~G~~Tlpv~lG~ 314 (396)
.+-..+||+-|+|.|+.. +++=|..-|+
T Consensus 51 ~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (277)
T PRK12883 51 SGGNTINDYFDYEIDKIN-RPNRPLPRGA 78 (277)
T ss_pred HHHhHHHhhhhHhccccC-CCCCCCCCCc
Confidence 456789999999999975 4666766554
No 91
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=60.19 E-value=88 Score=30.54 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056 285 AFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (396)
Q Consensus 285 ~~~~~~~~d~~D~egD~~~G~-~Tlpv~lG~ 314 (396)
..+-..+||+-|+|-|+++-+ +.=|..-|+
T Consensus 57 ~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~ 87 (296)
T PRK04375 57 AGAAGALNNYIDRDIDAKMERTKNRPLVTGR 87 (296)
T ss_pred HHHHHHHHhHHhhccCCCCCccCCCCCCCCC
Confidence 444578999999999998643 344544454
No 92
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=59.82 E-value=27 Score=34.18 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhcc-CCCCccccCc
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n-~p~RPl~sG~ 180 (396)
+..++-+.+-..+|++.|+|.|+.. .|.-|+.-|.
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 4556777788889999999999865 3455655554
No 93
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=59.65 E-value=48 Score=32.59 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (396)
Q Consensus 284 ~~~~~~~~~d~~D~egD~~~G~-~Tlpv~lG~ 314 (396)
...+-..+||+-|+|-|+++-+ +.-|..-|+
T Consensus 56 ~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~ 87 (294)
T PRK12873 56 VSGAGCIANDLWDRRIDRKVERTKNRPLARGK 87 (294)
T ss_pred HHHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence 3445578999999999998877 577776665
No 94
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=57.16 E-value=61 Score=31.95 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (396)
Q Consensus 284 ~~~~~~~~~d~~D~egD~~~G~-~Tlpv~lG~ 314 (396)
...+-..+||+-|.|-|++..+ +.=|..-|+
T Consensus 59 ~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~ 90 (306)
T PRK13362 59 VVASGCALNNCIDRDIDAKMQRTRNRVTVTGE 90 (306)
T ss_pred HHHHHHHHhChHHhCcCCCCCCCCCCCCCCCC
Confidence 3445678999999999987655 345555564
No 95
>PRK08238 hypothetical protein; Validated
Probab=57.09 E-value=47 Score=34.96 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCChHHHHHcC-Cccchhhhcc
Q 016056 283 IYAFVNGLLKDLPDVEGDKAFG-MQTLCVLLGK 314 (396)
Q Consensus 283 l~~~~~~~~~d~~D~egD~~~G-~~Tlpv~lG~ 314 (396)
+...+..++||+-|+|.|+++- ++.=|..-|+
T Consensus 237 l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~ 269 (479)
T PRK08238 237 LCASAVYILNDLLDLEADRAHPRKRRRPFASGA 269 (479)
T ss_pred HHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCC
Confidence 3344567899999999999974 3455655554
No 96
>PRK11383 hypothetical protein; Provisional
Probab=55.17 E-value=1.3e+02 Score=26.39 Aligned_cols=58 Identities=10% Similarity=0.252 Sum_probs=29.1
Q ss_pred hHHHHHHHHH-HHHHHHHHHHhhhhhhCCCCCChHHHHHHHHHH-HHHHHHHHHHHhCCChHHH
Q 016056 239 APFTLVILMG-LILQIPYFIHSQTYLLGKPFEVTGPFVFATAIM-SIYAFVNGLLKDLPDVEGD 300 (396)
Q Consensus 239 g~l~vg~~~g-~~~~lg~~~~~~~~l~g~~~~~~~~~~~~~~~~-~l~~~~~~~~~d~~D~egD 300 (396)
.++..+.+|- .+..++.+..+ +++.+...+.......+++ +++. ++.+-|++||...+
T Consensus 72 t~~f~~~cw~a~l~~i~LL~iG---LwNA~l~lsEKGfY~~af~lsLFg-ai~vQKn~RD~~~~ 131 (145)
T PRK11383 72 TSIYYMTCLTVFIISVALLMVG---LWNATLLLSEKGFYGLAFFLSLFG-AVAVQKNIRDAGIN 131 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HhcCCcchhhhhHHHHHHHHHHHH-HHHHHhhhhhhhhc
Confidence 3577777775 33444433331 2343333343333333332 3332 46788999998544
No 97
>PRK13595 ubiA prenyltransferase; Provisional
Probab=54.90 E-value=2.2e+02 Score=28.02 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCChHHHHHcCCc
Q 016056 285 AFVNGLLKDLPDVEGDKAFGMQ 306 (396)
Q Consensus 285 ~~~~~~~~d~~D~egD~~~G~~ 306 (396)
......+||+-|+|.|+++-++
T Consensus 60 n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 60 NLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHHhhhhhhhhccCCCC
Confidence 3456789999999999866443
No 98
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=54.53 E-value=1.7e+02 Score=28.95 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccC-CCCccccCc
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~-p~RPl~sG~ 180 (396)
+..++.+..-..++++.|+|.|+..+ |.-|..-|.
T Consensus 199 ~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 199 AGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 34455666677778999999998754 455655554
No 99
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=52.90 E-value=86 Score=30.21 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (396)
Q Consensus 284 ~~~~~~~~~d~~D~egD~~~G~-~Tlpv~lG~ 314 (396)
...+-..+||+-|.|-|++..+ +.=|..-|+
T Consensus 47 ~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 78 (280)
T TIGR01473 47 AAASANAFNMYIDRDIDKKMKRTRNRPLVTGR 78 (280)
T ss_pred HHHHHHHHHhhcccCcCCCCCCCCCCCCCCCC
Confidence 3445578999999999997543 444554453
No 100
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=51.21 E-value=2e+02 Score=28.13 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHcCCc-cchhhhcc
Q 016056 286 FVNGLLKDLPDVEGDKAFGMQ-TLCVLLGK 314 (396)
Q Consensus 286 ~~~~~~~d~~D~egD~~~G~~-Tlpv~lG~ 314 (396)
.+-..+||+-|+|-|++.-+. .=|..-|+
T Consensus 51 sag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~ 80 (286)
T PRK12895 51 TSAMSINRIEGLRYDMINPRKKDWALVSGR 80 (286)
T ss_pred HHHHHHHhHHHhcccCCCCcCCCCCCCCCC
Confidence 344689999999999887332 33444443
No 101
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=50.37 E-value=1.1e+02 Score=30.28 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHH
Q 016056 147 AQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSL 198 (396)
Q Consensus 147 ~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l 198 (396)
+.=++|.++-+.+|+.|-+.- +|.+|-+........+...+=.+...++
T Consensus 71 aiEliH~asLiHDDI~D~s~~---RRg~pt~~~~~G~~~Ail~GD~L~~~a~ 119 (319)
T TIGR02748 71 ALELIHMASLVHDDVIDDADL---RRGRPTIKSKWGNRIAMYTGDYLFAKSL 119 (319)
T ss_pred HHHHHHHHHHHhccccCCCCC---CCCCcCHHHHhChHHHHHHHHHHHHHHH
Confidence 445899999999999776643 3456655555566666655543443333
No 102
>PLN02878 homogentisate phytyltransferase
Probab=47.77 E-value=61 Score=31.66 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHhhhhhhhchhhhhccCC-CCccccCccCHHHHHHHH
Q 016056 149 IFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAIC 190 (396)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~D~~n~p-~RPl~sG~ls~~~a~~~~ 190 (396)
.+.......+||+-|.|-||..+. .-|+ ++.++.+..++
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv---~lG~~~~~~i~ 205 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSV---RLGQKRVFWLC 205 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceech---hhChHHHHHHH
Confidence 445556679999999999998753 4444 34444444443
No 103
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=47.59 E-value=1.6e+02 Score=30.29 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=12.2
Q ss_pred HHHHHHHhhhhhhhchhh
Q 016056 149 IFMNISLCSLNQICDVEI 166 (396)
Q Consensus 149 ~l~~~a~~~iNd~~D~e~ 166 (396)
.++..--..+|++++.++
T Consensus 115 ~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 115 ILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 445566678888887654
No 104
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=44.42 E-value=2.7e+02 Score=27.29 Aligned_cols=28 Identities=18% Similarity=0.017 Sum_probs=14.2
Q ss_pred HHHhheecCCCCcc-Ccccc-CchhHHHHHH
Q 016056 217 GLTGAAYSVPLPFL-RWKSH-TFMAPFTLVI 245 (396)
Q Consensus 217 ~~l~~~Ys~~lpp~-rlKr~-~~~g~l~vg~ 245 (396)
+.+..+|.. +|.. +.|.+ -..|.++.++
T Consensus 202 ~~f~~ly~~-lP~~~~~~~~~~~~Ga~~aai 231 (303)
T COG1295 202 LGFFLLYRF-LPNVRVLKWRDVLPGALLAAI 231 (303)
T ss_pred HHHHHHHHH-cCCccccchHHhhhhHHHHHH
Confidence 445667776 4665 33333 3345544443
No 105
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=41.67 E-value=48 Score=34.85 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchhhhhc
Q 016056 141 VLKAVVAQIFMNISLCSLNQICDVEIDKI 169 (396)
Q Consensus 141 ~ll~~l~~~l~~~a~~~iNd~~D~e~D~~ 169 (396)
..+...++.++..++-.-+|++|.-+|..
T Consensus 355 taLstaaGL~l~iasavsHDiY~~vik~~ 383 (529)
T COG4147 355 TALSTAAGLLLVIASAVSHDLYAMVIKKG 383 (529)
T ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHhCCC
Confidence 34556777888888888999999877765
No 106
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=39.00 E-value=1.9e+02 Score=28.48 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=20.7
Q ss_pred HHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056 288 NGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (396)
Q Consensus 288 ~~~~~d~~D~egD~~~G~-~Tlpv~lG~ 314 (396)
-..+||+-|+|-|+++-+ +.-|..-|+
T Consensus 63 g~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 63 GIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 468999999999988865 455655565
No 107
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=38.41 E-value=20 Score=33.17 Aligned_cols=31 Identities=39% Similarity=0.378 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCChHHHH----------HcCCccchhhhc
Q 016056 283 IYAFVNGLLKDLPDVEGDK----------AFGMQTLCVLLG 313 (396)
Q Consensus 283 l~~~~~~~~~d~~D~egD~----------~~G~~Tlpv~lG 313 (396)
-+..++.+.+|++|+.+|. +.|+.|+|....
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~ 197 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILA 197 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHH
Confidence 3456678999999998887 899999999988
No 108
>PLN02776 prenyltransferase
Probab=36.74 E-value=4.6e+02 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCChHHHHHcCC-ccchhhhcc
Q 016056 284 YAFVNGLLKDLPDVEGDKAFGM-QTLCVLLGK 314 (396)
Q Consensus 284 ~~~~~~~~~d~~D~egD~~~G~-~Tlpv~lG~ 314 (396)
...+-..+||+-|.|-|+++.+ +.=|..-|+
T Consensus 41 ~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGr 72 (341)
T PLN02776 41 CAASANTLNQVFEVKNDSKMKRTMRRPLPSGR 72 (341)
T ss_pred HHHHHHHHHhHHhhhhcccCCCCCCCCCCCCC
Confidence 3444578999999999998765 455555554
No 109
>PF03369 Herpes_UL3: Herpesvirus UL3 protein; InterPro: IPR005035 Herpes simplex viruses are large DNA viruses, the genome of which encode approximately 80 genes. The UL3 gene of Human herpesvirus 2 (HHV-2) is predicted to encode a 233 amino acid protein with a molecular mass of 26 kDa. Homologues of the UL3 protein are encoded only among alphaherpesviruses. The function of the UL3 protein of Herpes simplex viruses remains unknown but it is known to localize to the nucleus and is a phosphoprotein [].
Probab=34.88 E-value=63 Score=27.51 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=41.5
Q ss_pred cccccccccccccccccccCCCCCcccc-ccccccc-CC--CCCCCCCCcc-cccccccccccCCCCCCCCCchhhHHHH
Q 016056 22 SRKFASPIVTQRHKSSIKCSSQSSFSFP-NQNKISH-NN--NKPPCKPLVP-LALQDGHALQQSEDDNKPAAAPSFLEVV 96 (396)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (396)
|||..-+ +-+|.+|-|.--||||-+ ++++..+ +. +-+..|++|- .-|++.+ ...+
T Consensus 24 IRkdl~~---sl~~~~iACTKTssFs~~~~~~~~~~~~~~~~~~~~KSLQMFvLC~r~h-----------------A~~v 83 (134)
T PF03369_consen 24 IRKDLRM---SLAKFTIACTKTSSFSGASARRRKRKAPGARGNRSNKSLQMFVLCQRAH-----------------AKQV 83 (134)
T ss_pred HHHHHHH---HhhcCceEEeccccccccccccccccccccCCCCCCcceeeeeeehhhh-----------------HHHH
Confidence 4554333 568999999999999888 6555522 21 2233344444 3333322 2345
Q ss_pred HHHHHHHHHhhccchH
Q 016056 97 KRKLNAISHVTRYYAQ 112 (396)
Q Consensus 97 ~~~l~~~~~l~Rp~~~ 112 (396)
.+.+++.++.=||+..
T Consensus 84 R~qL~~vI~sRKPRkY 99 (134)
T PF03369_consen 84 RDQLYSVIQSRKPRKY 99 (134)
T ss_pred HHHHHHHHHhcCCccc
Confidence 5667777777777754
No 110
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=30.47 E-value=3.5e+02 Score=23.16 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=46.9
Q ss_pred CCCchhhHHHHHHHHHHHHHhhccc------hHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhh
Q 016056 86 PAAAPSFLEVVKRKLNAISHVTRYY------AQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLN 159 (396)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~l~Rp~------~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iN 159 (396)
.-+.+.++++....++......|-+ .+... +...+|..+... ...+ + .++..+++....-.+|
T Consensus 5 ~~g~~rl~~a~~ys~~Gl~~a~~~E~afR~e~~~~~-~~i~~~~~l~~~---~~e~------l-ll~~si~lvl~vEllN 73 (123)
T COG0818 5 TTGFRRLIKAFGYSLKGLKAAWKEEAAFRQELLAAL-VALVLAFFLGVS---AIEW------L-LLILSIFLVLIVELLN 73 (123)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhCCc---HHHH------H-HHHHHHHHHHHHHHHH
Confidence 3356777777776666666555543 33222 222334433211 1111 1 2345567778899999
Q ss_pred hhhchhhhhccCCCCcc
Q 016056 160 QICDVEIDKINKPYLPL 176 (396)
Q Consensus 160 d~~D~e~D~~n~p~RPl 176 (396)
.-.+.-.|+..+.+.|+
T Consensus 74 TAIEa~VD~~s~e~hel 90 (123)
T COG0818 74 TAIEAVVDLISPEYHEL 90 (123)
T ss_pred HHHHHHHHHcccchhHH
Confidence 99999999988766555
No 111
>PRK01637 hypothetical protein; Reviewed
Probab=24.71 E-value=6.3e+02 Score=24.28 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhhhhhhchhhh
Q 016056 147 AQIFMNISLCSLNQICDVEID 167 (396)
Q Consensus 147 ~~~l~~~a~~~iNd~~D~e~D 167 (396)
+.-.+..-...+|+.++.+++
T Consensus 105 a~~~~~~l~~a~N~i~~~~~~ 125 (286)
T PRK01637 105 ALMLISSIDKALNTIWRSKRK 125 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 334556667788888876554
No 112
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=24.00 E-value=3.7e+02 Score=21.33 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhcc
Q 016056 133 VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN 170 (396)
Q Consensus 133 ~~~~~l~~~ll~~l~~~l~~~a~~~iNd~~D~e~D~~n 170 (396)
.++.++.++....++..+...++..-|..+|...|++.
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 55556667777777888888889999999999888764
No 113
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=23.88 E-value=1e+02 Score=21.64 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=15.2
Q ss_pred HHHHHHhhhhhhhchhhhhc
Q 016056 150 FMNISLCSLNQICDVEIDKI 169 (396)
Q Consensus 150 l~~~a~~~iNd~~D~e~D~~ 169 (396)
+.-....++|.+.|.++|=.
T Consensus 16 Cl~lyl~ald~~CDQg~~F~ 35 (47)
T PRK10299 16 CLLLWAQVFNMMCDQDVQFF 35 (47)
T ss_pred HHHHHHHHHHHHhcCCccce
Confidence 33477888999999997743
No 114
>PRK10581 geranyltranstransferase; Provisional
Probab=23.79 E-value=83 Score=30.88 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHH
Q 016056 283 IYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLC 321 (396)
Q Consensus 283 l~~~~~~~~~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~ 321 (396)
-+.+++.+..|+.|+. +|.+.|+.|+|+.+|.+.+....
T Consensus 214 ~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a 263 (299)
T PRK10581 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_pred HHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHH
Confidence 4567788999999975 45778999999999987776543
No 115
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=20.66 E-value=1e+02 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhcc
Q 016056 143 KAVVAQIFMNISLCSLNQICDVEIDKIN 170 (396)
Q Consensus 143 l~~l~~~l~~~a~~~iNd~~D~e~D~~n 170 (396)
+.++++++....++..|=|+-+++||.+
T Consensus 36 IGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 3567777888889999999999999865
Done!