Query 016056
Match_columns 396
No_of_seqs 260 out of 2123
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 36.4 24 0.00081 33.3 3.5 41 283-323 207-258 (297)
2 3lsn_A Geranyltranstransferase 29.7 21 0.00071 33.8 1.9 41 283-323 214-265 (304)
3 3ts7_A Geranyltranstransferase 27.4 20 0.0007 34.2 1.4 41 283-323 220-271 (324)
4 2kdc_A Diacylglycerol kinase; 26.0 2.6E+02 0.0089 22.5 11.0 82 86-177 4-90 (121)
5 3lom_A Geranyltranstransferase 26.0 22 0.00075 33.8 1.3 41 283-323 221-272 (313)
6 4f62_A Geranyltranstransferase 25.4 27 0.00091 33.3 1.8 41 283-323 213-264 (317)
7 3p8r_A Geranyltranstransferase 25.3 24 0.00083 33.3 1.5 39 284-322 221-270 (302)
8 3p8l_A Geranyltranstransferase 24.2 27 0.00094 33.0 1.6 41 283-323 217-268 (302)
9 2h8o_A Geranyltranstransferase 22.6 23 0.0008 34.0 0.8 39 283-321 253-302 (335)
10 3oyr_A Trans-isoprenyl diphosp 21.7 5.2E+02 0.018 24.5 12.2 50 147-199 93-142 (345)
11 3llw_A Geranyltranstransferase 21.4 30 0.001 32.9 1.2 40 283-322 221-269 (311)
12 3uca_A Geranyltranstransferase 20.9 34 0.0012 32.7 1.5 40 283-322 242-292 (324)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=36.41 E-value=24 Score=33.33 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCChHH-----------HHHcCCccchhhhccccHHHHHHH
Q 016056 283 IYAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVLPLCVN 323 (396)
Q Consensus 283 l~~~~~~~~~d~~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~~~ 323 (396)
-+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.++...--
T Consensus 207 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~ 258 (297)
T 3m0g_A 207 ALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 258 (297)
T ss_dssp HHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHH
Confidence 45667889999999865 667899999999999988776443
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=29.65 E-value=21 Score=33.82 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCChHH-----------HHHcCCccchhhhccccHHHHHHH
Q 016056 283 IYAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVLPLCVN 323 (396)
Q Consensus 283 l~~~~~~~~~d~~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~~~ 323 (396)
-+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.++...--
T Consensus 214 ~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~ 265 (304)
T 3lsn_A 214 AIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALE 265 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHH
Confidence 35667788888888765 667899999999999888776543
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=27.39 E-value=20 Score=34.25 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHHHH
Q 016056 283 IYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLCVN 323 (396)
Q Consensus 283 l~~~~~~~~~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~~ 323 (396)
-+.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.++...--
T Consensus 220 ~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~ 271 (324)
T 3ts7_A 220 CIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEE 271 (324)
T ss_dssp HHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHH
Confidence 3456677778877764 4778899999999999888776543
No 4
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=26.01 E-value=2.6e+02 Score=22.53 Aligned_cols=82 Identities=13% Similarity=0.278 Sum_probs=48.0
Q ss_pred CCCchhhHHHHHHHHHHHHHhhccchHHHH-----HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016056 86 PAAAPSFLEVVKRKLNAISHVTRYYAQINI-----IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQ 160 (396)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~-----~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~iNd 160 (396)
..+.+.++++....++......|-+.-+.. ++...+|..+. .+...|. .++..+.+....-.+|.
T Consensus 4 ~~g~~r~~~s~~yA~~Gl~~a~~~E~~fr~~~~~~~~~i~~~~~l~---~s~~e~~-------~li~~i~lVl~~EllNT 73 (121)
T 2kdc_A 4 TTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLD---VDAITRV-------LLISSVMLVMIVEILNS 73 (121)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHCC---CCCSHHH-------HHHHHHHHHHHHHTHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh---CCHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 334556677766667777666664432222 22223343332 2222332 12334566777899999
Q ss_pred hhchhhhhccCCCCccc
Q 016056 161 ICDVEIDKINKPYLPLA 177 (396)
Q Consensus 161 ~~D~e~D~~n~p~RPl~ 177 (396)
-.+.-.|++.+.+.|+.
T Consensus 74 AIE~vvD~v~~e~h~la 90 (121)
T 2kdc_A 74 AIEAVVDRIGSEYHELS 90 (121)
T ss_dssp HHHHHHTTCCCCSCTTS
T ss_pred HHHHHHHHcCCccCHHH
Confidence 99999999887777764
No 5
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=25.99 E-value=22 Score=33.84 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCChHH-----------HHHcCCccchhhhccccHHHHHHH
Q 016056 283 IYAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVLPLCVN 323 (396)
Q Consensus 283 l~~~~~~~~~d~~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~~~ 323 (396)
-+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.++...--
T Consensus 221 ~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~ 272 (313)
T 3lom_A 221 HIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAV 272 (313)
T ss_dssp HHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHH
Confidence 34566778888877754 678899999999999888776443
No 6
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=25.37 E-value=27 Score=33.33 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHHHH
Q 016056 283 IYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLCVN 323 (396)
Q Consensus 283 l~~~~~~~~~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~~ 323 (396)
-+.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.++...--
T Consensus 213 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~ 264 (317)
T 4f62_A 213 AIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVR 264 (317)
T ss_dssp HHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3456677888887774 4677899999999999888776543
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=25.26 E-value=24 Score=33.29 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHHH
Q 016056 284 YAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLCV 322 (396)
Q Consensus 284 ~~~~~~~~~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~ 322 (396)
+.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.++...-
T Consensus 221 lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 270 (302)
T 3p8r_A 221 VGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAH 270 (302)
T ss_dssp HHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHH
Confidence 455667777776664 467889999999999888876543
No 8
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=24.25 E-value=27 Score=32.96 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHHHH
Q 016056 283 IYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLCVN 323 (396)
Q Consensus 283 l~~~~~~~~~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~~ 323 (396)
-+.+++.+..|+.|+. +|.+.|+.|+|+.+|.+.+....--
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~ 268 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTH 268 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3456677778877763 5788899999999999988776543
No 9
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=22.62 E-value=23 Score=33.98 Aligned_cols=39 Identities=28% Similarity=0.219 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCChHH-----------HHHcCCccchhhhccccHHHHH
Q 016056 283 IYAFVNGLLKDLPDVEG-----------DKAFGMQTLCVLLGKEKVLPLC 321 (396)
Q Consensus 283 l~~~~~~~~~d~~D~eg-----------D~~~G~~Tlpv~lG~~~a~~l~ 321 (396)
-+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+....
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a 302 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKL 302 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHH
Confidence 34566778888877654 6778999999999987776654
No 10
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=21.68 E-value=5.2e+02 Score=24.46 Aligned_cols=50 Identities=8% Similarity=-0.116 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHH
Q 016056 147 AQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA 199 (396)
Q Consensus 147 ~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~ 199 (396)
+.=+++.+.-+.+|+.|-+.= +|.+|-..-......+...+=.+...++-
T Consensus 93 aiEliH~asLiHDDi~D~s~~---RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~ 142 (345)
T 3oyr_A 93 AVEFIHTATLLHDDVVDGSQL---RRGKVAAHLIWGGAQSVLVGDFLFARAFE 142 (345)
T ss_dssp HHHHHHHHHHHTTTTC------------CCCSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccCCCCC---CCCCccHHHhhCHHHHHHHHHHHHHHHHH
Confidence 445789999999999765443 34556555566667666665444444443
No 11
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=21.36 E-value=30 Score=32.87 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCChHHHH---------HcCCccchhhhccccHHHHHH
Q 016056 283 IYAFVNGLLKDLPDVEGDK---------AFGMQTLCVLLGKEKVLPLCV 322 (396)
Q Consensus 283 l~~~~~~~~~d~~D~egD~---------~~G~~Tlpv~lG~~~a~~l~~ 322 (396)
-+.+++.+..|+.|+.+|. +.|+.|+|+.+|.+.+....-
T Consensus 221 ~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~ 269 (311)
T 3llw_A 221 KMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQ 269 (311)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHH
Confidence 4566778899998888765 579999999999988866543
No 12
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=20.92 E-value=34 Score=32.69 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCChH-----------HHHHcCCccchhhhccccHHHHHH
Q 016056 283 IYAFVNGLLKDLPDVE-----------GDKAFGMQTLCVLLGKEKVLPLCV 322 (396)
Q Consensus 283 l~~~~~~~~~d~~D~e-----------gD~~~G~~Tlpv~lG~~~a~~l~~ 322 (396)
-+.+++.+..|+.|+. .|.+.|+.|+|+.+|.+.++...-
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~ 292 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCV 292 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHH
Confidence 3456677777777763 578889999999999988876543
Done!