Query 016056
Match_columns 396
No_of_seqs 260 out of 2123
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 07:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016056.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016056hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 72.8 3.1 0.00023 36.8 6.7 54 146-200 68-121 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 21.1 1.1E+02 0.0078 26.1 7.4 46 284-329 76-122 (299)
3 d1rqja_ a.128.1.1 (A:) Farnesy 20.2 13 0.00095 32.6 0.7 54 145-199 70-123 (299)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 14.6 2.1E+02 0.015 22.5 7.3 9 153-161 109-117 (199)
5 d1rtra_ a.128.1.1 (A:) Farnesy 14.2 85 0.0062 26.7 4.8 45 285-329 74-119 (290)
6 d2q80a1 a.128.1.1 (A:6-296) Ge 11.3 35 0.0025 29.5 1.1 51 146-199 46-96 (291)
7 d2dlqa1 g.37.1.1 (A:93-118) GL 9.3 46 0.0033 17.6 0.7 8 37-44 2-9 (26)
8 d1v4ea_ a.128.1.1 (A:) Octopre 8.6 1.9E+02 0.014 24.2 5.1 41 287-328 68-108 (280)
9 d1fpsa_ a.128.1.1 (A:) Farnesy 7.6 35 0.0026 30.3 -0.5 33 283-315 229-271 (348)
10 d2j01d2 b.40.4.5 (D:2-126) N-t 6.9 1.7E+02 0.013 21.9 3.4 9 12-21 4-12 (125)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=72.83 E-value=3.1 Score=36.84 Aligned_cols=54 Identities=9% Similarity=-0.048 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHHH
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~l 200 (396)
.+.=++|.+.-+.+|+.|.|.|.. +|.+|-...+.....+...+-.+...++-+
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 455689999999999998887764 445565555566666666554444444433
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=21.11 E-value=1.1e+02 Score=26.14 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCChHH-HHHcCCccchhhhccccHHHHHHHHHHHHH
Q 016056 284 YAFVNGLLKDLPDVEG-DKAFGMQTLCVLLGKEKVLPLCVNMMLLGY 329 (396)
Q Consensus 284 ~~~~~~~~~d~~D~eg-D~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay 329 (396)
+-.+..+..|+.|.+. |.+.|..|.-..+|...+....-.++..++
T Consensus 76 lH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 76 IHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHH
Confidence 3334567789998876 589999999999999887665554444444
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=20.16 E-value=13 Score=32.62 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHH
Q 016056 145 VVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA 199 (396)
Q Consensus 145 ~l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~ 199 (396)
..+.=++|.++-+.+|+.|.|.|.. +|.+|-.-.......|...+-.+...++-
T Consensus 70 A~aiEllH~asLiHDDI~d~d~~~~-RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~ 123 (299)
T d1rqja_ 70 AAAVECIHAYSLIHDDLPAMDDDDL-RRGLPTCHVKFGEANAILAGDALQTLAFS 123 (299)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCCE-ETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhhhhhhc-ccccccceeeeCcchhhhhcchHHHHHHH
Confidence 3455689999999999998876543 33445444445556665555444444443
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.56 E-value=2.1e+02 Score=22.53 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.4
Q ss_pred HHHhhhhhh
Q 016056 153 ISLCSLNQI 161 (396)
Q Consensus 153 ~a~~~iNd~ 161 (396)
.+.+...++
T Consensus 109 ~~i~i~~~~ 117 (199)
T d1iwga7 109 DAIVVVENV 117 (199)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 333334333
No 5
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=14.15 E-value=85 Score=26.71 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCChHHH-HHcCCccchhhhccccHHHHHHHHHHHHH
Q 016056 285 AFVNGLLKDLPDVEGD-KAFGMQTLCVLLGKEKVLPLCVNMMLLGY 329 (396)
Q Consensus 285 ~~~~~~~~d~~D~egD-~~~G~~Tlpv~lG~~~a~~l~~~l~~~ay 329 (396)
-.+..+..|++|+++| .+.|+.|.-..+|.+.+....-.++..++
T Consensus 74 H~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~ 119 (290)
T d1rtra_ 74 HTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHH
Confidence 3345577899887664 68999999999999877655444443333
No 6
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.33 E-value=35 Score=29.46 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhhhhchhhhhccCCCCccccCccCHHHHHHHHHHHHHHHHH
Q 016056 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA 199 (396)
Q Consensus 146 l~~~l~~~a~~~iNd~~D~e~D~~n~p~RPl~sG~ls~~~a~~~~~~~~~l~l~ 199 (396)
.+.=++|.+.-+.+|+.|.+.=| |.+|-...+.....|...+-.+...++-
T Consensus 46 ~aiEllH~asLihDDi~D~~~~R---Rg~pt~~~~~G~~~Ail~gd~l~~~a~~ 96 (291)
T d2q80a1 46 EVTEMLHNASLLIDDIEDNSKLR---RGFPVAHSIYGIPSVINSANYVYFLGLE 96 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEE---TTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcccc---cCCCccccccchhhhhhHHHHHHHHHHH
Confidence 34458999999999998766533 3445444455666666666555555543
No 7
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.26 E-value=46 Score=17.61 Aligned_cols=8 Identities=63% Similarity=0.775 Sum_probs=5.3
Q ss_pred ccccCCCC
Q 016056 37 SIKCSSQS 44 (396)
Q Consensus 37 ~~~~~~~~ 44 (396)
|.|||+-|
T Consensus 2 pykcsscs 9 (26)
T d2dlqa1 2 PYKCSSCS 9 (26)
T ss_dssp SEECSSSC
T ss_pred CCcccHHH
Confidence 56777665
No 8
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=8.61 E-value=1.9e+02 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=28.7
Q ss_pred HHHHHHhCCChHHHHHcCCccchhhhccccHHHHHHHHHHHH
Q 016056 287 VNGLLKDLPDVEGDKAFGMQTLCVLLGKEKVLPLCVNMMLLG 328 (396)
Q Consensus 287 ~~~~~~d~~D~egD~~~G~~Tlpv~lG~~~a~~l~~~l~~~a 328 (396)
+..+..|+.| ++|.+.|.+|.-..+|...+....-.++..+
T Consensus 68 asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a 108 (280)
T d1v4ea_ 68 ASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSA 108 (280)
T ss_dssp HHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhh
Confidence 3445677766 5678999999999999987765544444333
No 9
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.63 E-value=35 Score=30.26 Aligned_cols=33 Identities=12% Similarity=-0.125 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCChH----------HHHHcCCccchhhhccc
Q 016056 283 IYAFVNGLLKDLPDVE----------GDKAFGMQTLCVLLGKE 315 (396)
Q Consensus 283 l~~~~~~~~~d~~D~e----------gD~~~G~~Tlpv~lG~~ 315 (396)
-+.+++.+.+|+.|+. +|.+.|++|+|+.+..+
T Consensus 229 ~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~ 271 (348)
T d1fpsa_ 229 EMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQ 271 (348)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHH
T ss_pred ccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHH
Confidence 3456677888887765 47788999999999754
No 10
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}
Probab=6.88 E-value=1.7e+02 Score=21.87 Aligned_cols=9 Identities=44% Similarity=0.903 Sum_probs=6.8
Q ss_pred CCCcCCCCCC
Q 016056 12 KFNPLQSPGC 21 (396)
Q Consensus 12 ~~~~~~~~~~ 21 (396)
+|+|.. |||
T Consensus 4 ~~kP~T-pg~ 12 (125)
T d2j01d2 4 KFKPYT-PSR 12 (125)
T ss_dssp CCCCSS-TTT
T ss_pred ccCCCC-CcC
Confidence 577765 998
Done!