Citrus Sinensis ID: 016057

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MAGFSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLFFHFCDCNHIFTVGKIIEYRWYEDKPDYKLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKKLPVLPCTLKIQDKFGTSLFDFRLLYVVNYMSSLVSVRGGHKLIT
ccccccccHHHHHHHHHcccccccccEEEEcccHHHHcccHHHHHHHHHHHccccccEEEEEEcccccccccccccEEEccccccccccccccccccccccccEEEEEEEEccEEEEEcccEEEEEccccccEEcccccccccccccEEEEEEEEEcccccEEEEEEEEEEccccccccEEEEEEcccccEEEEEcccccccccEEEcccccccEEEccEEEEEEEEccccccccccccccEEEEEEccccEEEEEccccccccccccEEEEEEEccEEEEEEEEEcccccEEEEEEEccccccccEEEEEEEccccccccEEEEEEccEEEEEEcccEEEEEEcccccEEEEccccccccEEcccccccccccEEEEEEEEEcEEcccccccccc
ccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEccccccEccccccEcccccccccccccccccccccccccEEEEEEEEccEEEEEEcccccEEEEccccccEEEEcccccccccccEEEEEEEcccccccEEEEEEEEcccccccccEEEEEEEccccccEEEEcccccccccccccccccccEEEccEEEEEEEEccccccccccccccEEEEEEcccccccccccccccccccccEEEEEEcHHHHEEEEEcccccccEEEEEEEEccccccccHEEEEEccccccccEEEEEEcccEEEEEcccEEEEEEccccccEEEEEEEccEEEEEEccccccccccEEEEEEcccEEEEccccEEEc
magfsdlpEELVFKILVLLPvdsllcskcvqKSWYSLITNSRFVVKHLRNQIRNKNSCALVisrpisfdiseanglffhfcdcnhiftVGKIIEyrwyedkpdyklvghCHGIVCFALLSGrvvlanpaiREFRHLREHcyhsfsywmgcvgfgydvksndyKVVRILCIsdgsglchLKVEVYTLSADCWRELVANIDFLGAGTRFLKdnfecqyfrGACYWILwdksvginynnlvngdfifsfdmsdevfqklpvpnilnEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKklfttepfceikrplsfceRGELIMEDYYREACsynlgtkeikklpvlpctlkiqdkfgtslfdFRLLYVVNYMSSLVsvrgghklit
magfsdlpEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLFFHFCDCNHIFTVGKIIEYRWYEDKPDYKLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFttepfceikrplSFCERGELIMEDYYREACSYNLGtkeikklpvlPCTLKIQDKFGTSLFDFRLLYVVNYMSslvsvrgghklit
MAGFSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLFFHFCDCNHIFTVGKIIEYRWYEDKPDYKLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKKLPVLPCTLKIQDKFGTSLFDFRLLYVVNYMSSLVSVRGGHKLIT
********EELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLFFHFCDCNHIFTVGKIIEYRWYEDKPDYKLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKKLPVLPCTLKIQDKFGTSLFDFRLLYVVNYMSSLVSVRG******
**G*SDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLFFHFCDCNHIFTVGKIIEYRWYEDKPDYKLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKKLPVLPCTLKIQDKFGTSLFDFRLLYVVNYMSSLV**********
MAGFSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLFFHFCDCNHIFTVGKIIEYRWYEDKPDYKLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKKLPVLPCTLKIQDKFGTSLFDFRLLYVVNYMSSLVSVRGGHKLIT
****SDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLFFHFCDCNHIFTVGKIIEYRWYEDKPDYKLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKKLPVLPCTLKIQDKFGTSLFDFRLLYVVNYMSSLVSVRGGHKLIT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAGFSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLFFHFCDCNHIFTVGKIIEYRWYEDKPDYKLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIKRPLSFCERGELIMEDYYREACSYNLGTKEIKKLPVLPCTLKIQDKFGTSLFDFRLLYVVNYMSSLVSVRGGHKLIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
Q8GXC7427 F-box/kelch-repeat protei yes no 0.840 0.779 0.241 1e-17
Q9LUP5388 F-box/kelch-repeat protei no no 0.691 0.706 0.27 2e-14
Q9LIR8364 F-box/kelch-repeat protei no no 0.734 0.799 0.269 1e-13
Q9SAB5363 Putative F-box/LRR-repeat no no 0.689 0.752 0.271 5e-12
Q84V15370 F-box protein At2g18780 O no no 0.717 0.767 0.263 6e-12
Q9LVS9416 Probable F-box protein At no no 0.691 0.658 0.260 3e-11
Q9SFC7417 F-box protein At3g07870 O no no 0.825 0.784 0.229 4e-11
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.825 0.791 0.217 5e-11
Q9LUN5398 Putative F-box protein At no no 0.757 0.753 0.246 5e-11
Q9LUQ9391 F-box/kelch-repeat protei no no 0.739 0.749 0.229 7e-11
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function desciption
 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 178/410 (43%), Gaps = 77/410 (18%)

Query: 7   LPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCAL----VI 62
           LP E++ +IL+ LP  S+   +CV K + +L ++  F   HL   +RN++  +L    ++
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 63  SR-------------------------PISFDISEANGLFFHFCDCNHIFTVGKII---- 93
           S                          P+  D S  + +  ++   +H++   +++    
Sbjct: 96  SSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYV-GDHLYDDRRVMLKLN 154

Query: 94  --EYR--WYEDKPDYKLVGHCHGIVCFALLSGRVVLANPAIREFRHLREHCY-HSFSYWM 148
              YR  W E      +VG  +G+VC +   G V L NP   + + L E+    S  Y  
Sbjct: 155 AKSYRRNWVE------IVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYER 208

Query: 149 G---CVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGT 205
                 GFG+D  ++DYK+V+++  S+      L   VY+L AD WR  + N+++     
Sbjct: 209 DNFQTYGFGFDGLTDDYKLVKLVATSEDI----LDASVYSLKADSWRR-ICNLNYEHNDG 263

Query: 206 RFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEI 265
            +        +F GA +W+  +      +N  V    + +FD+  E F+++PVP+   + 
Sbjct: 264 SYTS----GVHFNGAIHWVFTES----RHNQRV----VVAFDIQTEEFREMPVPDEAEDC 311

Query: 266 DQEFSKLTV--LNESLAFVLRDKYRKSYEIQ--IWVMDEFGANEIWKKLFTTEPFCEIKR 321
              FS   V  LN  L  V        Y++   IWVM E+G  + W ++     +  +K 
Sbjct: 312 SHRFSNFVVGSLNGRLCVV-----NSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMK- 365

Query: 322 PLSFCERGELIMEDYYREACSYNLGTKEIKKLPVLPCTLKIQDKFGTSLF 371
           PL   +  E ++ +   +   YN  T     L +  C +K+ D F  + +
Sbjct: 366 PLCSTKNDEEVLLELDGDLVLYNFETNASSNLGI--CGVKLSDGFEANTY 413

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUP5|FBK59_ARATH F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana GN=At3g17530 PE=2 SV=2 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9SAB5|FBLK2_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1 Back     alignment and function description
>sp|Q84V15|FB320_ARATH F-box protein At2g18780 OS=Arabidopsis thaliana GN=At2g18780 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVS9|FB340_ARATH Probable F-box protein At5g47300 OS=Arabidopsis thaliana GN=At5g47300 PE=4 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q9LUN5|FB156_ARATH Putative F-box protein At3g17620 OS=Arabidopsis thaliana GN=At3g17620 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUQ9|FBK56_ARATH F-box/kelch-repeat protein At3g16740 OS=Arabidopsis thaliana GN=At3g16740 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
29420805409 F-box [Prunus mume] 0.911 0.882 0.341 9e-43
28866899409 S locus F-box protein d [Prunus dulcis] 0.911 0.882 0.330 2e-42
169264899411 S locus F-box protein with the low allel 0.919 0.885 0.340 2e-42
28866897409 S locus F-box protein c [Prunus dulcis] 0.916 0.887 0.338 5e-42
169264901410 S locus F-box protein with the low allel 0.911 0.880 0.352 8e-42
449494779383 PREDICTED: F-box protein CPR30-like [Cuc 0.921 0.953 0.311 1e-41
169264903409 S locus F-box protein with the low allel 0.919 0.889 0.334 8e-41
117939129407 S locus F-box protein with the low allel 0.906 0.882 0.332 6e-40
117939135410 S locus F-box protein with the low allel 0.906 0.875 0.332 8e-40
29420807399 F-box [Prunus mume] 0.898 0.892 0.327 1e-39
>gi|29420805|dbj|BAC66624.1| F-box [Prunus mume] Back     alignment and taxonomy information
 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 146/427 (34%), Positives = 205/427 (48%), Gaps = 66/427 (15%)

Query: 9   EELVFK-ILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRPIS 67
           EE+  + IL  LP  SL+  KCV+KSWYSLI N  FV  HL N + +K    ++ SR + 
Sbjct: 3   EEMALRPILPRLPSKSLMRFKCVRKSWYSLINNPTFVENHLSNSMHSKLCTCVLFSRFVQ 62

Query: 68  FDI-SEANGLFFHFC------------------DCNHIFTVGKIIEYRWYEDKPDYKLVG 108
            D  S+   L F F                   D     + G+ I     ED     ++G
Sbjct: 63  RDTNSDGKELAFSFLYLRNDYDDDEHNVNFVVEDIKFPLSSGRFIG---LEDVESPSILG 119

Query: 109 HCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGC-VGFGYDVKSNDYKVVRI 167
           HC+GIVC +  S  +VL NPAI+E + L +        W GC VGFGYD KS DYKV RI
Sbjct: 120 HCNGIVCISPCSDNLVLCNPAIKEIKLLPK---SGLPDWWGCAVGFGYDPKSKDYKVCRI 176

Query: 168 LCI-SDGSGLC-HLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWIL 225
               ++  GL    +VE+YTLS D WRE + N       T F  D F+  YF+G CYW+ 
Sbjct: 177 ASYQAEIDGLIPPPRVEIYTLSTDSWRE-IKNNSLETDTTCFFPDYFQ-MYFQGICYWVG 234

Query: 226 WDKS-VGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFS-------------K 271
           +++    + Y +      +  FD  DE+F  L  P+   + ++  S             +
Sbjct: 235 YEQPKQSVEYEDEEQKPIVIFFDTGDEIFHNLLFPDSFYKYEEGSSYAYEMSYLMYCDLR 294

Query: 272 LTVLNESLAFVLRDKYR---KSYEIQIWVMDEF-GANEIWKKLFTTEPFCEIKRPLSFCE 327
           + + N S+A    +++     SY   +WV+D+F GA   W K  T EP   IKR L F  
Sbjct: 295 IILWNGSIALFGFNRFSIFPDSY--GVWVLDDFDGAKGSWTKHLTFEPLMGIKRVLEFWR 352

Query: 328 RGELIMEDYYREACSYNLGTKEIKKLPVLPCTLKIQDKFGTSLFDFRLLYVVNYMSSLVS 387
             E++M     +  SYNL T+++K LP+             SL DF  +  VN   SLVS
Sbjct: 353 SDEILMVTEDGDIVSYNLATEKLKNLPM------------NSLSDFETIVYVN---SLVS 397

Query: 388 VRGGHKL 394
           +  G+KL
Sbjct: 398 ITRGNKL 404

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|28866899|dbj|BAC65209.1| S locus F-box protein d [Prunus dulcis] Back     alignment and taxonomy information
>gi|169264899|dbj|BAG12293.1| S locus F-box protein with the low allelic sequence polymorphism 1-S2 [Prunus avium] Back     alignment and taxonomy information
>gi|28866897|dbj|BAC65208.1| S locus F-box protein c [Prunus dulcis] Back     alignment and taxonomy information
>gi|169264901|dbj|BAG12294.1| S locus F-box protein with the low allelic sequence polymorphism 1-S5 [Prunus avium] Back     alignment and taxonomy information
>gi|449494779|ref|XP_004159645.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|169264903|dbj|BAG12295.1| S locus F-box protein with the low allelic sequence polymorphism 1-S6 [Prunus avium] Back     alignment and taxonomy information
>gi|117939129|dbj|BAF36713.1| S locus F-box protein with the low allelic sequence polymorphism 1-S4 [Prunus avium] Back     alignment and taxonomy information
>gi|117939135|dbj|BAF36716.1| S locus F-box protein with the low allelic sequence polymorphism 1-Sf [Prunus mume] Back     alignment and taxonomy information
>gi|29420807|dbj|BAC66625.1| F-box [Prunus mume] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.590 0.642 0.270 9.5e-18
TAIR|locus:2054033370 AT2G18780 "AT2G18780" [Arabido 0.724 0.775 0.261 5.1e-15
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.616 0.571 0.234 5.6e-14
TAIR|locus:2090557398 AT3G17620 "AT3G17620" [Arabido 0.760 0.756 0.251 1.3e-13
TAIR|locus:2089308391 AT3G16740 "AT3G16740" [Arabido 0.739 0.749 0.241 4.6e-13
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.724 0.688 0.247 6.2e-12
TAIR|locus:2027397363 AT1G11620 "AT1G11620" [Arabido 0.590 0.644 0.282 5.7e-11
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.830 0.796 0.227 8e-11
TAIR|locus:2038618347 AT2G27520 "AT2G27520" [Arabido 0.368 0.420 0.248 5.2e-10
TAIR|locus:2090567388 AT3G17530 "AT3G17530" [Arabido 0.537 0.548 0.267 5.5e-10
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 188 (71.2 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
 Identities = 70/259 (27%), Positives = 110/259 (42%)

Query:     6 DLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRFVVKHLRNQIRNKNSCALVISRP 65
             +LP E++ +IL+ LPV SL   KCV  SW SLI+ + F +KH    I   +        P
Sbjct:    13 NLPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHAL--ILETSKATTSTKSP 70

Query:    66 ISFDISEANGLFFHFCDCNHIFTVGKI-IEYRWYE--DKPDYKLVGHCHGIVCFAL-LSG 121
               + +   +      C  + ++    + +     E   +  Y++VG CHG+VCF +    
Sbjct:    71 --YGVITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDK 128

Query:   122 RVVLANPAIREFRHLREHCYH-SFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLK 180
              + L NP I+  + L       S    +   GFGYD   +DYKVV +L          ++
Sbjct:   129 SLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALL---QQRHQVKIE 185

Query:   181 VEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNG 240
              ++Y+     WR   +N  F  +G      +    Y  G   W     S           
Sbjct:   186 TKIYSTRQKLWR---SNTSF-PSGVVVADKSRSGIYINGTLNWAATSSSSSWT------- 234

Query:   241 DFIFSFDMSDEVFQKLPVP 259
               I S+DMS + F++LP P
Sbjct:   235 --IISYDMSRDEFKELPGP 251
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
TAIR|locus:2054033 AT2G18780 "AT2G18780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090557 AT3G17620 "AT3G17620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089308 AT3G16740 "AT3G16740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038618 AT2G27520 "AT2G27520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090567 AT3G17530 "AT3G17530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00110934
hypothetical protein (381 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 5e-19
pfam0064648 pfam00646, F-box, F-box domain 3e-04
pfam07734159 pfam07734, FBA_1, F-box associated 0.002
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 0.003
pfam1293747 pfam12937, F-box-like, F-box-like 0.004
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 84.7 bits (210), Expect = 5e-19
 Identities = 55/254 (21%), Positives = 91/254 (35%), Gaps = 36/254 (14%)

Query: 107 VGHCHGIVCFALLSGRVVLANPAIREFRHL----REHCYHSFSYWMGCVGFGYDVKSNDY 162
           V  C G++CF+    R+V+ NP+  + R L              +      GYD     Y
Sbjct: 1   VVPCDGLICFSYGK-RLVVWNPSTGQSRWLPTPKSRRSNKESDTY----FLGYDPIEKQY 55

Query: 163 KVVRILCISDGSGLCHLKVEVYTLSADCWRELVANIDFLGAGTRFLKDNFECQYFRGACY 222
           KV+     S          +VYTL ++ WR     I+                   G  Y
Sbjct: 56  KVLCFSDRSGNRNQSEH--QVYTLGSNSWR----TIECSPPHHPLKSRGV---CINGVLY 106

Query: 223 WILWDKSVGINYNNLVNGDFIFSFDMSDEVFQKLPVPNILNEIDQEFSKLTVLNESLAFV 282
           ++ +      +Y       FI SFD+S E F++       N    ++  L      LA +
Sbjct: 107 YLAYTLKTNPDY-------FIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVL 159

Query: 283 LRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPFCEIK-----RPLSFCERGELIMEDYY 337
              + + +    +WV+++ G  E W KLFT                 F ++GE+++    
Sbjct: 160 K--QKKDTNNFDLWVLNDAGKQE-WSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED 216

Query: 338 RE---ACSYNLGTK 348
                   YN+G  
Sbjct: 217 ENPFYIFYYNVGEN 230

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|219544 pfam07734, FBA_1, F-box associated Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.75
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.69
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.54
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.96
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.85
PHA02713557 hypothetical protein; Provisional 98.81
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.73
PHA03098534 kelch-like protein; Provisional 98.68
PLN02193470 nitrile-specifier protein 98.54
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.53
PHA02713557 hypothetical protein; Provisional 98.5
PHA02790480 Kelch-like protein; Provisional 98.5
PLN02153341 epithiospecifier protein 98.46
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.45
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.38
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.31
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.3
PLN02153341 epithiospecifier protein 98.15
PLN02193470 nitrile-specifier protein 98.06
PHA03098534 kelch-like protein; Provisional 98.01
PHA02790480 Kelch-like protein; Provisional 97.74
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.69
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.55
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.35
KOG4693392 consensus Uncharacterized conserved protein, conta 97.33
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 96.8
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.51
KOG4693392 consensus Uncharacterized conserved protein, conta 96.42
KOG1230 521 consensus Protein containing repeated kelch motifs 96.18
KOG2997366 consensus F-box protein FBX9 [General function pre 96.16
KOG0281499 consensus Beta-TrCP (transducin repeats containing 95.97
KOG0379482 consensus Kelch repeat-containing proteins [Genera 95.85
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 94.29
KOG1230 521 consensus Protein containing repeated kelch motifs 93.1
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 92.16
PF1396450 Kelch_6: Kelch motif 91.19
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 90.7
smart00284255 OLF Olfactomedin-like domains. 88.12
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 87.82
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 87.26
PF1396450 Kelch_6: Kelch motif 86.41
KOG4341483 consensus F-box protein containing LRR [General fu 86.08
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 84.89
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 84.86
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 83.8
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 82.09
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 81.7
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 80.85
KOG2055514 consensus WD40 repeat protein [General function pr 80.66
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=4.3e-37  Score=276.40  Aligned_cols=221  Identities=24%  Similarity=0.392  Sum_probs=165.8

Q ss_pred             EeeeCceEEEeEcCCcEEEEcchhhhhccccccccCCCCcceeEEEEEEecCCCCeEEEEEEEEeCCCCcccceEEEEEc
Q 016057          107 VGHCHGIVCFALLSGRVVLANPAIREFRHLREHCYHSFSYWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTL  186 (396)
Q Consensus       107 ~~sc~GLlc~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~yKVv~~~~~~~~~~~~~~~~evys~  186 (396)
                      ++|||||||+... ..++||||+||+++.||+++.+........++||||+.+++||||++......  .....++||++
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~   77 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTL   77 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEe
Confidence            4799999999876 58999999999999999765421111222689999999999999999754221  13478999999


Q ss_pred             CCCccccccccccccccccccccCCcceEEEcceEEEEEeccCCcccccCCCCccEEEEEeCCCceee-eecCCCCcccc
Q 016057          187 SADCWRELVANIDFLGAGTRFLKDNFECQYFRGACYWILWDKSVGINYNNLVNGDFIFSFDMSDEVFQ-KLPVPNILNEI  265 (396)
Q Consensus       187 ~t~~Wr~~~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~~~  265 (396)
                      ++++||.++..+      ....... .+|++||++||++....       ......|++||+++|+|+ .+++|.... .
T Consensus        78 ~~~~Wr~~~~~~------~~~~~~~-~~v~~~G~lyw~~~~~~-------~~~~~~IvsFDl~~E~f~~~i~~P~~~~-~  142 (230)
T TIGR01640        78 GSNSWRTIECSP------PHHPLKS-RGVCINGVLYYLAYTLK-------TNPDYFIVSFDVSSERFKEFIPLPCGNS-D  142 (230)
T ss_pred             CCCCccccccCC------CCccccC-CeEEECCEEEEEEEECC-------CCCcEEEEEEEcccceEeeeeecCcccc-c
Confidence            999999988411      1112233 39999999999987641       111238999999999999 589997421 1


Q ss_pred             ccccceEEEecCeeEEEEeecCCCccEEEEEEEccCCCCCCeEEEEEecCC--CCc---ceeEEEEeCCcEEEEecC--C
Q 016057          266 DQEFSKLTVLNESLAFVLRDKYRKSYEIQIWVMDEFGANEIWKKLFTTEPF--CEI---KRPLSFCERGELIMEDYY--R  338 (396)
Q Consensus       266 ~~~~~~l~~~~g~L~~~~~~~~~~~~~~~IW~l~~~~~~~~W~~~~~i~~~--~~~---~~p~~~~~~g~il~~~~~--~  338 (396)
                      ......|++++|+||++......++  ++||+|++++. ++|+|+++|+..  ..+   ..|+++..+|+|++....  +
T Consensus       143 ~~~~~~L~~~~G~L~~v~~~~~~~~--~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~  219 (230)
T TIGR01640       143 SVDYLSLINYKGKLAVLKQKKDTNN--FDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENP  219 (230)
T ss_pred             cccceEEEEECCEEEEEEecCCCCc--EEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCc
Confidence            1224679999999999998765455  99999999874 569999999842  122   347888889999998653  3


Q ss_pred             e-EEEEECCCC
Q 016057          339 E-ACSYNLGTK  348 (396)
Q Consensus       339 ~-l~~yd~~t~  348 (396)
                      . ++.||++++
T Consensus       220 ~~~~~y~~~~~  230 (230)
T TIGR01640       220 FYIFYYNVGEN  230 (230)
T ss_pred             eEEEEEeccCC
Confidence            4 999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 5e-04
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 58/386 (15%), Positives = 107/386 (27%), Gaps = 115/386 (29%)

Query: 24  LLCSKCVQKSWY------SLITNSRFVVKHLRNQIRNKNSCALVISRPISFDISEANGLF 77
            L SK  Q+          L  N +F++  ++ + R         S      I + + L+
Sbjct: 70  TLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-------SMMTRMYIEQRDRLY 120

Query: 78  FHFCDCNHIFT------VGKIIEYR--WYEDKPDYKLVGHCHGIVCFALLSGRVVLANPA 129
               + N +F       +   ++ R    E +P   ++    G++      G+  +A   
Sbjct: 121 ----NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGS----GKTWVALDV 170

Query: 130 IREFRHLREHCYHSFS-YWMGCVGFGYDVKSNDYKVVRILCISDGSGLCHLKVEVYTLSA 188
              +   +  C   F  +W+               V+ +L       L +     +T  +
Sbjct: 171 CLSY---KVQCKMDFKIFWL---NLKNCNSPET--VLEML-----QKLLYQIDPNWTSRS 217

Query: 189 DCWRELVANIDFLGAG-TRFLKDNFECQYFRGACYWIL---WDKSVGINYNNLVNGDFIF 244
           D    +   I  + A   R LK      Y    C  +L    +                 
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSK---PYEN--CLLVLLNVQNAKA------------WN 260

Query: 245 SFDMSDEVFQ-KLPVPNILNEIDQEFSKLTVLNESLAFVLRDKYRK--SYEIQIWVMDEF 301
           +F+        K     IL         LT   + +   L        S +     +   
Sbjct: 261 AFN-----LSCK-----IL---------LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 302 GANEIWKKLFTTEPFC---EIKR--PLSFCERGELIME-----DYYR-----------EA 340
               +  K     P     E+    P       E I +     D ++           E+
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 341 CSYNLGTKEIKK----LPVLPCTLKI 362
               L   E +K    L V P +  I
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHI 387
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.18
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.14
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.11
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.05
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.99
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.98
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.93
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.92
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.87
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.85
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.79
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.73
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.72
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.72
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.7
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.67
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.55
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.48
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.42
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.41
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.05
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.62
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.54
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.52
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.37
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.9
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.27
3jrp_A379 Fusion protein of protein transport protein SEC13 92.24
3jro_A 753 Fusion protein of protein transport protein SEC13 91.39
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 90.15
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 85.66
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 85.59
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 83.66
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 82.68
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 81.6
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
Probab=99.18  E-value=1.1e-11  Score=112.42  Aligned_cols=51  Identities=22%  Similarity=0.480  Sum_probs=47.8

Q ss_pred             CCCCCCCcHHHHHHHhhcCCccccc-cccccchhhhhhhCChHHHHHHHhcc
Q 016057            1 MAGFSDLPEELVFKILVLLPVDSLL-CSKCVQKSWYSLITNSRFVVKHLRNQ   51 (396)
Q Consensus         1 m~~~~~LP~Dll~eIL~rLP~~sl~-r~r~VcK~W~~li~~~~F~~~~~~~~   51 (396)
                      |+++..||+||+.+||+|||+++|+ ||++|||+|++||+++.|.+.|..+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            4567899999999999999999999 99999999999999999999998765
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 396
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 2e-06
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 1e-04
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 1e-04
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 0.002
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 4  FSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRF 43
          +  LP+EL+  I   L +  LL    V K WY L ++   
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.3
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.73
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.52
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.3
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.08
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.06
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.12
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.1
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.3e-13  Score=82.17  Aligned_cols=40  Identities=33%  Similarity=0.600  Sum_probs=37.9

Q ss_pred             CCCCcHHHHHHHhhcCCccccccccccchhhhhhhCChHH
Q 016057            4 FSDLPEELVFKILVLLPVDSLLCSKCVQKSWYSLITNSRF   43 (396)
Q Consensus         4 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~~~~F   43 (396)
                      |+.||+|++.+||++||+++|+|+++|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5789999999999999999999999999999999999864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure