Query 016058
Match_columns 396
No_of_seqs 115 out of 268
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 9E-106 2E-110 775.4 24.2 396 1-396 2-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 1.1E-49 2.4E-54 401.4 26.8 354 9-388 1-385 (385)
3 COG0679 Predicted permeases [G 100.0 6.5E-29 1.4E-33 244.8 20.4 308 7-393 2-309 (311)
4 TIGR00946 2a69 he Auxin Efflux 100.0 1.9E-27 4.1E-32 235.0 23.1 316 6-390 2-319 (321)
5 PRK09903 putative transporter 99.9 1E-24 2.2E-29 215.2 24.1 305 13-395 8-313 (314)
6 TIGR00841 bass bile acid trans 97.3 0.00086 1.9E-08 65.6 8.8 109 279-393 13-122 (286)
7 PF01758 SBF: Sodium Bile acid 93.7 0.19 4.1E-06 45.9 6.6 108 280-392 4-112 (187)
8 TIGR00841 bass bile acid trans 92.4 1.1 2.4E-05 43.8 10.2 106 10-125 137-246 (286)
9 COG0385 Predicted Na+-dependen 91.8 0.9 2E-05 45.2 8.8 111 277-393 41-152 (319)
10 TIGR00832 acr3 arsenical-resis 91.3 1.9 4.2E-05 43.0 10.8 138 239-393 13-158 (328)
11 PF13593 DUF4137: SBF-like CPA 90.5 1.8 3.8E-05 43.1 9.6 143 238-392 3-147 (313)
12 TIGR00832 acr3 arsenical-resis 85.9 1.9 4.2E-05 43.1 6.5 101 15-116 182-289 (328)
13 COG0385 Predicted Na+-dependen 81.1 7.7 0.00017 38.7 8.4 44 74-117 224-267 (319)
14 PF05684 DUF819: Protein of un 67.6 8.5 0.00018 39.3 5.0 82 17-101 28-113 (378)
15 PRK12460 2-keto-3-deoxyglucona 58.2 65 0.0014 32.1 9.0 102 13-123 165-267 (312)
16 PF03390 2HCT: 2-hydroxycarbox 48.7 1.5E+02 0.0033 30.7 10.2 129 12-150 51-196 (414)
17 PF13593 DUF4137: SBF-like CPA 42.6 1E+02 0.0022 30.5 7.8 96 13-113 163-266 (313)
18 TIGR00783 ccs citrate carrier 40.0 74 0.0016 32.2 6.3 82 17-101 207-294 (347)
19 PF05684 DUF819: Protein of un 39.8 57 0.0012 33.4 5.6 103 14-127 240-343 (378)
20 PRK11677 hypothetical protein; 36.0 41 0.0009 29.3 3.3 25 73-100 3-27 (134)
21 PF03812 KdgT: 2-keto-3-deoxyg 33.6 2E+02 0.0044 28.7 8.0 108 11-126 168-276 (314)
22 PF06305 DUF1049: Protein of u 32.3 59 0.0013 24.1 3.3 25 73-97 18-42 (68)
23 TIGR03082 Gneg_AbrB_dup membra 31.3 1.4E+02 0.003 26.3 6.1 47 55-101 55-105 (156)
24 COG3493 CitS Na+/citrate sympo 30.4 3.4E+02 0.0073 28.1 9.0 103 20-127 82-195 (438)
25 COG2323 Predicted membrane pro 28.9 1.4E+02 0.0031 28.3 5.9 81 14-101 8-88 (224)
26 PF06295 DUF1043: Protein of u 28.9 56 0.0012 28.1 3.0 22 79-100 2-23 (128)
27 PRK05274 2-keto-3-deoxyglucona 28.5 84 0.0018 31.5 4.6 100 15-122 174-274 (326)
28 COG0475 KefB Kef-type K+ trans 28.0 1.6E+02 0.0034 30.2 6.6 64 37-101 264-328 (397)
29 PF03616 Glt_symporter: Sodium 27.9 4.2E+02 0.009 26.9 9.6 92 56-157 73-172 (368)
30 PF03601 Cons_hypoth698: Conse 27.1 74 0.0016 31.5 3.9 46 60-105 69-116 (305)
31 PF11120 DUF2636: Protein of u 27.1 1E+02 0.0022 23.3 3.7 27 65-97 2-28 (62)
32 PRK05326 potassium/proton anti 26.9 3.2E+02 0.0069 29.3 9.0 97 22-124 252-350 (562)
33 PF09964 DUF2198: Uncharacteri 26.6 1.4E+02 0.003 23.4 4.4 53 46-98 3-68 (74)
34 COG3763 Uncharacterized protei 25.6 1.2E+02 0.0026 23.5 3.8 24 72-95 3-26 (71)
35 COG1346 LrgB Putative effector 24.6 3.7E+02 0.0081 25.6 7.8 75 44-123 61-136 (230)
36 COG3180 AbrB Putative ammonia 24.4 1.5E+02 0.0032 30.1 5.4 48 54-101 65-116 (352)
37 PF09512 ThiW: Thiamine-precur 21.5 1.4E+02 0.0031 26.5 4.1 71 23-98 74-148 (150)
38 PF05552 TM_helix: Conserved T 20.6 1.3E+02 0.0029 21.4 3.2 33 66-98 8-40 (53)
39 PRK01844 hypothetical protein; 20.5 1.7E+02 0.0037 22.7 3.8 25 72-96 3-27 (72)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.1e-106 Score=775.37 Aligned_cols=396 Identities=48% Similarity=0.872 Sum_probs=340.6
Q ss_pred CchHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHH
Q 016058 1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN 78 (396)
Q Consensus 1 m~~~~l~~~a~--~pv~kVlli~~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~ 78 (396)
||+++++-.|. +|++||++|+.+|+++|+|+.|++++|+||.+|++||++|+|||+|+|+|+++|.|++.+||+||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhccc
Q 016058 79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYKALAQAAEPE 158 (396)
Q Consensus 79 ~ll~~~~g~~~g~~~~~i~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~~~~~~~f~~~~~~~~rg~aY~~i~~~~g~~ 158 (396)
+.+++++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|+++++|||++|.|.+||++|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccchhhhhccCCCCCcccccccccCCCC-CC---CCCcccccccccccc---cchhhhhHhhH-HHHHHH
Q 016058 159 EVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKS-SS---DPECQIIVPQASHLQ---TRKESFWKRSL-EFLHQL 230 (396)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~---~~~~~~~~~~~-~~~~~~ 230 (396)
++|+|+||++.+.+.+...+.+++.-|+.++..+..+. ++ ++++++..+..++++ .++....+|.+ ...+..
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~~~ 241 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEKVI 241 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHHhh
Confidence 99999999766543221111111111110000000000 11 111111111111111 01111111111 122334
Q ss_pred HHhhcChhHHHHHHHHHHhcchHHHHhhccCCCcchhhHHHHHHhcCcchhhHHhhhccccccccccCCCCCcchhhhHH
Q 016058 231 LEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVC 310 (396)
Q Consensus 231 l~~~~~Pp~ia~ilg~iiglippLr~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~iv~ 310 (396)
++++++||++|+++|+++|.|||||+++|++++|+++++|+++.+||++|||++++||+||++|+++|.++.|+++++++
T Consensus 242 L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii 321 (408)
T KOG2722|consen 242 LKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIII 321 (408)
T ss_pred HHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhCCCC-CChhHHHHHhhccCCchhHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016058 311 VRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSM 389 (396)
Q Consensus 311 ~RliilP~igi~iv~~~~~~g~~~-~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~il~w~Y~~~~islt~~~~ 389 (396)
+||+++|..|+++|..++|+|.++ |||+|+||++||+++|||||++++||+||.+|+|||+++||+|+++.+++|+|++
T Consensus 322 ~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~ 401 (408)
T KOG2722|consen 322 GRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSV 401 (408)
T ss_pred eeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 016058 390 VYMWILS 396 (396)
Q Consensus 390 ~~l~l~~ 396 (396)
+|+|++.
T Consensus 402 ~f~~lv~ 408 (408)
T KOG2722|consen 402 FFLWLVV 408 (408)
T ss_pred HHHHHhC
Confidence 9999973
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=1.1e-49 Score=401.44 Aligned_cols=354 Identities=28% Similarity=0.450 Sum_probs=284.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHH
Q 016058 9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI 88 (396)
Q Consensus 9 ~a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~~ll~~~~g~~ 88 (396)
+++++++++++++++||+++ |+|+++++.+|.+|++++++++|||+|++++++.+.+++.++|++++++++.++++++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL 78 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 36789999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhccccccccccccc
Q 016058 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYKALAQAAEPEEVPKEVNKDF 168 (396)
Q Consensus 89 ~g~~~~~i~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~~~~~~~f~~~~~~~~rg~aY~~i~~~~g~~~~~~~~~~~l 168 (396)
+++++.|++|.|+++|+.+..+|+|+|++++|+.++++++. ++|.+|++++..++.+..|++|+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g-------------~~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFG-------------ERGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhc-------------chhhhhehHHHHhhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999964 38999999999999999999999865
Q ss_pred ccchhhhhcc---CC--CC----Ccccccc--cccCCCCCC---CCCccc-ccc-----------cccccccc----hhh
Q 016058 169 DANAQTQLLR---GT--TD----DQEDVSV--LVASTKSSS---DPECQI-IVP-----------QASHLQTR----KES 218 (396)
Q Consensus 169 ~~~~~~~~~~---~~--~~----~~~~~~~--~~~~~~~~~---~~~~~l-~~~-----------~~~~~~~~----~~~ 218 (396)
..+++++..+ ++ ++ ++++++. ++.+....+ +++.+. ..+ +..++.+. +.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (385)
T PF03547_consen 146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQK 225 (385)
T ss_pred cccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhh
Confidence 5432211110 00 00 0000000 000000000 000000 000 00000000 011
Q ss_pred hhHhhHHH-HHHHHHhhcChhHHHHHHHHHHhcchHHHHhhccCCCcchhhHHHHHHhcCcchhhHHhhhcccccccccc
Q 016058 219 FWKRSLEF-LHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRS 297 (396)
Q Consensus 219 ~~~~~~~~-~~~~l~~~~~Pp~ia~ilg~iiglippLr~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~ 297 (396)
.+++.++. .+...+.++|||++|+++|++++++|+.|+++++ .+++++++++|++++|++++++|++|++++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~ 300 (385)
T PF03547_consen 226 SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPRK 300 (385)
T ss_pred hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcc
Confidence 11122221 2334789999999999999999999999999988 69999999999999999999999999998877
Q ss_pred CCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhHHHHHhhccCCchhHHHHHHHhcccchhhhHHHHHHHHH
Q 016058 298 STLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTY 377 (396)
Q Consensus 298 s~~~~~~iv~iv~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~il~w~Y 377 (396)
.+.+.+.....++.|++++|++++++++.+. -|+....+++++.++|||++..++|+.|+..+++++..++|+|
T Consensus 301 ~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~------l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~ 374 (385)
T PF03547_consen 301 SALGWKPSIIAVLVRLIILPLIGIGIVFLLG------LDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWST 374 (385)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7788888888899999999999999998664 2666788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 016058 378 LVAALALTGWS 388 (396)
Q Consensus 378 ~~~~islt~~~ 388 (396)
+++.+++|+|+
T Consensus 375 ~~~~~~~~~~~ 385 (385)
T PF03547_consen 375 LLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHC
Confidence 99999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.96 E-value=6.5e-29 Score=244.76 Aligned_cols=308 Identities=20% Similarity=0.265 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Q 016058 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (396)
Q Consensus 7 ~~~a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~~ll~~~~g 86 (396)
++..+.++++++++.++||+++ |.|.++++..|.+|++++++++|||+|++++++-.-++ +++..++.....+...+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4667899999999999999999 99999999999999999999999999999999987666 77777888777777777
Q ss_pred HHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhccccccccccc
Q 016058 87 GILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYKALAQAAEPEEVPKEVNK 166 (396)
Q Consensus 87 ~~~g~~~~~i~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~~~~~~~f~~~~~~~~rg~aY~~i~~~~g~~~~~~~~~~ 166 (396)
.+...+..|.+|.++++++.+..+.+|+|++++++.+..++ | .++|.+|.++++.+++...|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~------G~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------F------GEKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------c------CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778889999999999999999999999998866666 3 3589999999999999999999987
Q ss_pred ccccchhhhhccCCCCCcccccccccCCCCCCCCCcccccccccccccchhhhhHhhHHHHHHHHHhhcChhHHHHHHHH
Q 016058 167 DFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGF 246 (396)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pp~ia~ilg~ 246 (396)
.+.+..++ +++..+ +...+-+.||+.+|.++|+
T Consensus 146 ~l~~~~~~----------------------------------------~~~~~~-------~~~~~~~~nP~i~a~i~g~ 178 (311)
T COG0679 146 LLARSGGG----------------------------------------TNKSLL-------SVLKKLLTNPLIIALILGL 178 (311)
T ss_pred HHHHhcCC----------------------------------------chhHHH-------HHHHHHHhCcHHHHHHHHH
Confidence 65432110 000011 1113567899999999999
Q ss_pred HHhcchHHHHhhccCCCcchhhHHHHHHhcCcchhhHHhhhccccccccccCCCCCcchhhhHHHHHHHHhHHHHHHHHH
Q 016058 247 IFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKA 326 (396)
Q Consensus 247 iiglippLr~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~iv~~RliilP~igi~iv~~ 326 (396)
+..... +.- -.++.++++++|++++|+.++++|+.|+. .+.++...+.+......|+++.|++...+.+.
T Consensus 179 ~~~~~~------i~l---P~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~ 248 (311)
T COG0679 179 LLNLLG------ISL---PAPLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPIILIALSLKLLLAPLVALLVAKL 248 (311)
T ss_pred HHHHcC------CCC---cHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 998755 111 12899999999999999999999999987 45566777888888888999999999996654
Q ss_pred HHHhCCCCCChhHHHHHhhccCCchhHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 327 AAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 393 (396)
Q Consensus 327 ~~~~g~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~il~w~Y~~~~islt~~~~~~l~ 393 (396)
. | + ++...-++.++.++|+|.|-..+++.++..++..+...+-|-.++.+++|.|..++.+
T Consensus 249 ~---~-l--~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~~ 309 (311)
T COG0679 249 L---G-L--SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLR 309 (311)
T ss_pred c---C-C--ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 2 2 4444488999999999999999999999999999999999999999999999887765
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.96 E-value=1.9e-27 Score=235.05 Aligned_cols=316 Identities=17% Similarity=0.160 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHH
Q 016058 6 FFEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFL 84 (396)
Q Consensus 6 l~~~a~~pv~kVlli~~~G~~l-A~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~~ll~~~ 84 (396)
.+|..+..++.++++.+.||++ . |+|+++++..|.+|++++++.+||++|+++++.-..++....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999999 8 999999999999999999999999999999985333344455555555556667
Q ss_pred HHHHHHHHHHH-HhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhcccccccc
Q 016058 85 IGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYKALAQAAEPEEVPKE 163 (396)
Q Consensus 85 ~g~~~g~~~~~-i~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~~~~~~~f~~~~~~~~rg~aY~~i~~~~g~~~~~~~ 163 (396)
..++++|.+.| .+|.+++.++....+++++|++.+-+-+++++- |++. . .+..|...+.....+..|+.
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~-------G~~~--~-~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLF-------GEEG--A-KILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHh-------cccc--h-hhhHHHHHHHhccchhHHHH
Confidence 78899999998 889999999999999999999999999999994 3321 0 12455554444444556888
Q ss_pred cccccccchhhhhccCCCCCcccccccccCCCCCCCCCcccccccccccccchhhhhHhhHHHHHHHHHhhcChhHHHHH
Q 016058 164 VNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAI 243 (396)
Q Consensus 164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pp~ia~i 243 (396)
++.......++ . + ++.++.+++.++.+ .+-+.||+.+|.+
T Consensus 150 ~~~~~~~~~~~----~-------------------------------~--~~~~~~~~~~~~~~---~~~~~nP~iia~i 189 (321)
T TIGR00946 150 GLFLVSEDGAG----G-------------------------------E--GSGESTRLMLIFVW---KKLIKFPPLWAPL 189 (321)
T ss_pred HHHHhcccccc----c-------------------------------c--ccchhHHHHHHHHH---HHHHhCCChHHHH
Confidence 76432211000 0 0 00011112222221 2445789999999
Q ss_pred HHHHHhcchHHHHhhccCCCcchhhHHHHHHhcCcchhhHHhhhccccccccccCCCCCcchhhhHHHHHHHHhHHHHHH
Q 016058 244 VGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWV 323 (396)
Q Consensus 244 lg~iiglippLr~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~iv~~RliilP~igi~i 323 (396)
+|+++...+. + .=.++.++++++|++++|+.++++|..+.. ++.+.+++.+...++.|+++.|++...+
T Consensus 190 ~Gl~~~~~~i-~--------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~~~~~~~~~~~~~klil~P~i~~~~ 258 (321)
T TIGR00946 190 LSVILSLVGF-K--------MPGLILKSISILSGATTPMALFSLGLALSP--RKIKLGVRDAILALIVRFLVQPAVMAGI 258 (321)
T ss_pred HHHHHHHHhh-c--------CcHHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhccChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998762 1 115899999999999999999999999864 3333455778888999999999999777
Q ss_pred HHHHHHhCCCCCChhHHHHHhhccCCchhHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016058 324 VKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMV 390 (396)
Q Consensus 324 v~~~~~~g~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~il~w~Y~~~~islt~~~~~ 390 (396)
.+. ++-|+...-++.++.++|||.+...+++.|+.++++.+...+++..++.+++|+|+.+
T Consensus 259 ~~~------~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 259 SKL------IGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHH------hCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 2347888999999999999999999999999999999999999999999999999875
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.94 E-value=1e-24 Score=215.22 Aligned_cols=305 Identities=14% Similarity=0.166 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWI 92 (396)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~~ll~~~~g~~~g~~ 92 (396)
.++-++++.++||++. |+|+++++..|.+|++++++.+||++|+++.+. +.+++.+-|.+.+..++.+...++++|+
T Consensus 8 ~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (314)
T PRK09903 8 DLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSWF 84 (314)
T ss_pred HHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3555668899999999 999999999999999999999999999999874 6666654455667778888888888888
Q ss_pred HHH-HhCCCCCCCCeeEEEeecCCcchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHHHHhhhcccccccccccccccc
Q 016058 93 VVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYKALAQAAEPEEVPKEVNKDFDAN 171 (396)
Q Consensus 93 ~~~-i~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL~~~~~~~f~~~~~~~~rg~aY~~i~~~~g~~~~~~~~~~~l~~~ 171 (396)
+.| ..|.+++.++....+++++|++.+-+-+++++ ||++.. -|+.|..++ ...+...|++|...++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~-~~~~~~~~~~g~~~~~~~ 153 (314)
T PRK09903 85 GCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIIS-IIVNAITIPIGLYLLNPS 153 (314)
T ss_pred HHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHH-HHHHHHHHHHHHHHHccc
Confidence 875 66777777778888889999999999999998 443311 144443333 234556788876554321
Q ss_pred hhhhhccCCCCCcccccccccCCCCCCCCCcccccccccccccchhhhhHhhHHHHHHHHHhhcChhHHHHHHHHHHhcc
Q 016058 172 AQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAV 251 (396)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Pp~ia~ilg~iigli 251 (396)
+.+ + ++ ++..+ +.+ .+-+-||+.+|.++|+++.+.
T Consensus 154 ~~~---~----------------------------------~~-~~~~~----~~l---~~~~~nP~iia~~~gl~~~l~ 188 (314)
T PRK09903 154 SGA---D----------------------------------GK-KNSNL----SAL---ISAAKEPVVWAPVLATILVLV 188 (314)
T ss_pred ccc---c----------------------------------cc-cchHH----HHH---HHHHhchHHHHHHHHHHHHHc
Confidence 100 0 00 00011 122 244778999999999997642
Q ss_pred hHHHHhhccCCCcchhhHHHHHHhcCcchhhHHhhhccccccccccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHhC
Q 016058 252 VWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALG 331 (396)
Q Consensus 252 ppLr~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~iv~~RliilP~igi~iv~~~~~~g 331 (396)
. - +.-.++.++++++|++++|+.++.+|++|++...+ .. +......+.|+++.|++...+... .|
T Consensus 189 ~--------i-~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~--~~-~~~~~~~~~Kli~~P~i~~~~~~~---~~ 253 (314)
T PRK09903 189 G--------V-KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE--FS-AEIAYNTFLKLILMPLALLLVGMA---CH 253 (314)
T ss_pred C--------C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc-HHHHHHHHHHHHHHHHHHHHHHHH---cC
Confidence 1 1 11259999999999999999999999999874222 22 345567788999999988655443 23
Q ss_pred CCCCChhHHHHHhhccCCchhHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016058 332 FLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWIL 395 (396)
Q Consensus 332 ~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~il~w~Y~~~~islt~~~~~~l~l~ 395 (396)
+ |+...=+++++.++|+|.+-..+++.|+..++..+...+.+-.++.+++|+|+.+ +.++
T Consensus 254 l---~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l-~~~~ 313 (314)
T PRK09903 254 L---NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV-SRLV 313 (314)
T ss_pred C---CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 3 6777789999999999999999999999888889999999999999999999985 4443
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.33 E-value=0.00086 Score=65.64 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=89.3
Q ss_pred chhhHHhhhccccccc-cccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhHHHHHhhccCCchhHHHHH
Q 016058 279 TIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGT 357 (396)
Q Consensus 279 ~VPl~llvLGa~L~~g-~~~s~~~~~~iv~iv~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fvl~l~~~~PpA~~l~~ 357 (396)
.+..+++.+|.++... +++...+++.+...++.|++++|+++..+.+.+ +.||.+...+++..++|+|.+-..
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~l~~~~~~glvL~~~~P~~~~s~v 86 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------KLPPELAVGVLIVGCCPGGTASNV 86 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHheeeCCCchHHHH
Confidence 3677889999999742 222224557788888899999999997776532 568999999999999999999999
Q ss_pred HHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 358 MTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 393 (396)
Q Consensus 358 itql~~~~e~e~s~il~w~Y~~~~islt~~~~~~l~ 393 (396)
+|+.++...+..+.....+-+++.+++|+|..++..
T Consensus 87 ~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 87 FTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988777777777779999999999999988764
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.65 E-value=0.19 Score=45.87 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=73.7
Q ss_pred hhhHHhhhcccccc-ccccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhHHHHHhhccCCchhHHHHHH
Q 016058 280 IPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM 358 (396)
Q Consensus 280 VPl~llvLGa~L~~-g~~~s~~~~~~iv~iv~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fvl~l~~~~PpA~~l~~i 358 (396)
+-..++.+|.++.. -.++..-++|.++...+..++++|+++.++.+.. .++||-+..-+++..+.|.+...-..
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 34566777777752 1222223467788888899999999999997433 46799999999999999999998888
Q ss_pred HhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 359 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 392 (396)
Q Consensus 359 tql~~~~e~e~s~il~w~Y~~~~islt~~~~~~l 392 (396)
|.+.+-..+-..+....+-..+.+.+|+|..++.
T Consensus 79 t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 79 TYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcccccceeeHHHHHHHHHHHHHHHHHh
Confidence 8876643333334444777999999999988765
No 8
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.38 E-value=1.1 Score=43.85 Aligned_cols=106 Identities=15% Similarity=0.084 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcCCHHHHhh---cccchhhhhhhHHHHHhhccccchhhH-HHHHHHHHHHHHHHHH
Q 016058 10 ASMPIVQVLLISVLGALMATQYWNLLTADARRS---LNKMVFTVFTPSLMFASLAKTVTLEEI-ISWWFMPVNVAMTFLI 85 (396)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~---lS~l~~~~FlP~Lifs~la~~lt~~~l-~~~w~ipv~~ll~~~~ 85 (396)
..+ ..-+++-...|..+.+ .- ++.+|. ++.+... ++=++++.-++.+. +++ .+.|.+-+-.++...+
T Consensus 137 ~~~-~~~v~vPl~lG~~~r~--~~---p~~~~~~~~~~~~s~~-~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 137 GLS-LVAVLIPVSIGMLVKH--KL---PQIAKIILKVGLISVF-LLSVIIAVVGGINV--ENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHH-HHHHHHHHHHHHHHHH--Hh---HHHHHHHHhCchHHHH-HHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHH
Confidence 344 6778888999998873 21 223333 3332222 22234444443332 222 2233344446778899
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHH
Q 016058 86 GGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVP 125 (396)
Q Consensus 86 g~~~g~~~~~i~~~p~~~~~~v~~~~~f~N~~~LPl~li~ 125 (396)
|+.+||+..|.+|.+++.+.-+.-.++..|++ +-+++..
T Consensus 208 ~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~ 246 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQ 246 (286)
T ss_pred HHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHH
Confidence 99999999999999999999999999999988 5554333
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=91.76 E-value=0.9 Score=45.18 Aligned_cols=111 Identities=13% Similarity=0.116 Sum_probs=82.4
Q ss_pred CcchhhHHhhhccccccc-cccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCChhHHHHHhhccCCchhHHH
Q 016058 277 DGTIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 355 (396)
Q Consensus 277 ~a~VPl~llvLGa~L~~g-~~~s~~~~~~iv~iv~~RliilP~igi~iv~~~~~~g~~~~Dpv~~fvl~l~~~~PpA~~l 355 (396)
...+-++++.+|.+|.+. .+..-.+||..+..++.-++++|++++++.+.. +-||-..-=+++..|.|..++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~------~l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLF------PLPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHhHHheeeCCCchhH
Confidence 345677888999999752 122336678888999999999999999998754 3588888888899999999999
Q ss_pred HHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 356 GTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 393 (396)
Q Consensus 356 ~~itql~~~~e~e~s~il~w~Y~~~~islt~~~~~~l~ 393 (396)
-.+|++.+-.-.-.-..-.-+-++.++..|+++..|+.
T Consensus 115 ~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 115 NAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888875332322222335777788888888887653
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=91.31 E-value=1.9 Score=43.04 Aligned_cols=138 Identities=14% Similarity=0.038 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcchHHHHhhccCCCcchhhHHHHHHhcCcchh------hHHhhhcccccc-ccccCCCCCcchhhhHHH
Q 016058 239 TLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIP------CITLILGGNLIQ-GLRSSTLKPLIIIAVVCV 311 (396)
Q Consensus 239 ~ia~ilg~iiglippLr~lf~~~~~pL~~i~~s~~~lG~a~VP------l~llvLGa~L~~-g~~~s~~~~~~iv~iv~~ 311 (396)
..++++|+++|..-|-.. .+.... .+.....| .+++.+|.+|.. -.++.--++|.+....+.
T Consensus 13 ~~~~i~~~~~g~~~P~~~---------~~~~~~--~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~ 81 (328)
T TIGR00832 13 FLAIAAGVGLGVLFPSVF---------QALAAL--EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFI 81 (328)
T ss_pred HHHHHHHHHHHHhccccH---------HHHHHH--HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHH
Confidence 566777888888554211 111110 11233444 367777788752 122233456788899999
Q ss_pred HHHHHhHHHHHHHHHHHHhCCCCCChhHHHHHhhccCCchhHHHHHHHhcccchhhhHHHHH-HHHHHHHHHHHHHHHHH
Q 016058 312 RYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLF-LWTYLVAALALTGWSMV 390 (396)
Q Consensus 312 RliilP~igi~iv~~~~~~g~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~il-~w~Y~~~~islt~~~~~ 390 (396)
-++++|+++.++.+.+ .+.+|-+..=+++..|.|.+.....+|.+.+-. ...|..+ -.+-.++.+..|.+..+
T Consensus 82 qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGn-valsv~lt~~stLl~~~~~P~l~~l 155 (328)
T TIGR00832 82 NWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQLAKGD-PEYTLVLVAVNSLFQVFLYAPLAWL 155 (328)
T ss_pred HHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987643 255788999999999999998777777765432 3333332 36667777777777766
Q ss_pred HHH
Q 016058 391 YMW 393 (396)
Q Consensus 391 ~l~ 393 (396)
|+.
T Consensus 156 l~~ 158 (328)
T TIGR00832 156 LLG 158 (328)
T ss_pred HHh
Confidence 653
No 11
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=90.51 E-value=1.8 Score=43.05 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHhcchHHHHhhccCCCcchhhHHHHHHhcCcchhhHHhhhcccccc-ccccCCCCCcchhhhHHHHHHHH
Q 016058 238 PTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIAL 316 (396)
Q Consensus 238 p~ia~ilg~iiglippLr~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~-g~~~s~~~~~~iv~iv~~Rliil 316 (396)
-.++.++++.+|..=|-. +...+++.. +......|.++.++-|.+|.. ..++.-.++|....+...=+++.
T Consensus 3 fl~~l~~ai~la~~~P~~------g~~~~~~~~--~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~ 74 (313)
T PF13593_consen 3 FLLGLLLAILLAYLFPAP------GAAGGVIKP--EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLF 74 (313)
T ss_pred hHHHHHHHHHHHHHcCcc------cccCCccch--hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 356667777776554432 112223321 122333488999999999864 22223366788888999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCChhHHHHHhhccCCchhHHHH-HHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 317 PFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG-TMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 392 (396)
Q Consensus 317 P~igi~iv~~~~~~g~~~~Dpv~~fvl~l~~~~PpA~~l~-~itql~~~~e~e~s~il~w~Y~~~~islt~~~~~~l 392 (396)
|+++.++.+.... + .||-+..=+++..|+|+.++.. .+|+..|-.+.-.-..-.-+-.+.++..|+|+..++
T Consensus 75 Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 75 PLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 9999999876653 2 3566899999999999998875 577765432322111122577888888999988776
No 12
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=85.87 E-value=1.9 Score=43.06 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhhcc-----CcCCHHHHhhcccchhhhhhhHHHHHhhccccc--hhhHHHHHHHHHHHHHHHHHHH
Q 016058 15 VQVLLISVLGALMATQYW-----NLLTADARRSLNKMVFTVFTPSLMFASLAKTVT--LEEIISWWFMPVNVAMTFLIGG 87 (396)
Q Consensus 15 ~kVlli~~~G~~lA~~~~-----gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt--~~~l~~~w~ipv~~ll~~~~g~ 87 (396)
.-+++-...|..+.+... +...++.++.++.+.. +++=..++...+.+-. .++..+.+.+-.-.++++.+++
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~ 260 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMF 260 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 344556677776664211 1222234444555443 2333344444444321 1222233333334668889999
Q ss_pred HHHHHHHHHhCCCCCCCCeeEEEeecCCc
Q 016058 88 ILGWIVVKLLRPKPHLEGLVIATCASGNL 116 (396)
Q Consensus 88 ~~g~~~~~i~~~p~~~~~~v~~~~~f~N~ 116 (396)
.+|+.+.|.+|.++++|.-+.-+++-.|.
T Consensus 261 ~lg~~~~r~~~l~~~~~~a~~~e~g~qN~ 289 (328)
T TIGR00832 261 FLTFALAKKLGLPYSITAPAAFTGASNNF 289 (328)
T ss_pred HHHHHHHHHhCcChhhhhhheehhhhhhH
Confidence 99999999999999999999999998885
No 13
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=81.15 E-value=7.7 Score=38.67 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcc
Q 016058 74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLG 117 (396)
Q Consensus 74 ~ipv~~ll~~~~g~~~g~~~~~i~~~p~~~~~~v~~~~~f~N~~ 117 (396)
.+-+...++..+|+..||...|.+|.|++.|.-+.-|++-.|.+
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH
Confidence 46666788889999999999999999999999999999999985
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=67.61 E-value=8.5 Score=39.33 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHH----HHHHHHHHHHHHHH
Q 016058 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN----VAMTFLIGGILGWI 92 (396)
Q Consensus 17 Vlli~~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~----~ll~~~~g~~~g~~ 92 (396)
++++...|.+++ ..|++|.+....+.+.+.+.++|.-++-=+ -+.+++++.+...=.+. ..+.+++|..+++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999 899996666777888888888887776555 44566666665533333 34445666666665
Q ss_pred HHHHhCCCC
Q 016058 93 VVKLLRPKP 101 (396)
Q Consensus 93 ~~~i~~~p~ 101 (396)
+.+-.--|+
T Consensus 105 l~~~~l~~~ 113 (378)
T PF05684_consen 105 LFGGFLGPE 113 (378)
T ss_pred HHhhcccch
Confidence 555442343
No 15
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=58.24 E-value=65 Score=32.10 Aligned_cols=102 Identities=22% Similarity=0.237 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHH-HHHHHHHHHHHHHHHHH
Q 016058 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF-MPVNVAMTFLIGGILGW 91 (396)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~-ipv~~ll~~~~g~~~g~ 91 (396)
+.+..++-..+|.++. | ++++.|+.+++=.- +..|-.. --+|.+++++++.+.++ .-+..++...+...+++
T Consensus 165 ~lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~-f~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG----N-LDPDMRKFLTKGGP-LLIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh----c-cchhhHHHHhccce-EeHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4466788889999888 4 77777777666532 2333333 35899999999999854 44444566677888888
Q ss_pred HHHHHhCCCCCCCCeeEEEeecCCcchhHHHH
Q 016058 92 IVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123 (396)
Q Consensus 92 ~~~~i~~~p~~~~~~v~~~~~f~N~~~LPl~l 123 (396)
.+.|.+|.+++. ....+...||.--=|-++
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAV 267 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAI 267 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHH
Confidence 888999887744 222233367776556553
No 16
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=48.67 E-value=1.5e+02 Score=30.74 Aligned_cols=129 Identities=16% Similarity=0.249 Sum_probs=82.7
Q ss_pred HHHHHH------HHHHHHHHHHHhhccCcCCHHHHhhcccch-----hhhhhhHHHHHhhc---cccchhhHHHHHHHHH
Q 016058 12 MPIVQV------LLISVLGALMATQYWNLLTADARRSLNKMV-----FTVFTPSLMFASLA---KTVTLEEIISWWFMPV 77 (396)
Q Consensus 12 ~pv~kV------lli~~~G~~lA~~~~gil~~~~~k~lS~l~-----~~~FlP~Lifs~la---~~lt~~~l~~~w~ipv 77 (396)
-|++|= ++..+...++. +.|+++++..+.+.+.. .++|.-||+-.++= +.+=.+...++ +|.
T Consensus 51 iPi~k~yiGGg~il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~--~p~ 126 (414)
T PF03390_consen 51 IPILKDYIGGGAILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARF--IPP 126 (414)
T ss_pred ChhhhccCChHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHH--HHH
Confidence 466665 55666668888 89999999998887765 36788888877762 23334455555 555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC--CCCCeeEEEeecCC-cchhHHHHHHHHhhcCCCCCCChhhhhhhhhHHHH
Q 016058 78 NVAMTFLIGGILGWIVVKLLRPKP--HLEGLVIATCASGN-LGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYKA 150 (396)
Q Consensus 78 ~~ll~~~~g~~~g~~~~~i~~~p~--~~~~~v~~~~~f~N-~~~LPl~li~sL~~~~~~~f~~~~~~~~rg~aY~~ 150 (396)
.+...+.+.++|-++..++..+. -.-+.+++.-+=|| -|.+|++.+.+=.. + .+.++-.++-+..+.
T Consensus 127 -il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~--g---~~~~~~~s~~ipa~~ 196 (414)
T PF03390_consen 127 -ILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEAL--G---QDAEEYFSQLIPALT 196 (414)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHh--C---CCHHHHHHHHHHHHH
Confidence 55666667777777777777653 23344555555555 79999998755432 1 244444455554444
No 17
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=42.61 E-value=1e+02 Score=30.50 Aligned_cols=96 Identities=17% Similarity=0.293 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCcCCHHH---HhhcccchhhhhhhHHHHHhhccccchh---hH--HHHHHHHHHHHHHHH
Q 016058 13 PIVQVLLISVLGALMATQYWNLLTADA---RRSLNKMVFTVFTPSLMFASLAKTVTLE---EI--ISWWFMPVNVAMTFL 84 (396)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~---~k~lS~l~~~~FlP~Lifs~la~~lt~~---~l--~~~w~ipv~~ll~~~ 84 (396)
=++++++-...|-.+.. . +.+.. +|.+++ .=...+-.++++...++..-+ ++ .....+-...+....
T Consensus 163 L~~~vllP~~~Gq~~r~--~--~~~~~~~~~~~~~~-~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLRR--W--VPKWVARHKKPLSL-LSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL 237 (313)
T ss_pred HHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence 34567777778886652 1 22322 222222 233444556666665553211 11 223333333556667
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeeEEEeec
Q 016058 85 IGGILGWIVVKLLRPKPHLEGLVIATCAS 113 (396)
Q Consensus 85 ~g~~~g~~~~~i~~~p~~~~~~v~~~~~f 113 (396)
+...++|...|.++.+++.|--++.|++-
T Consensus 238 ~~l~~~~~~~r~~~~~~~d~iA~~F~gs~ 266 (313)
T PF13593_consen 238 VVLVLGWLAARLLGFSRPDRIAVLFCGSQ 266 (313)
T ss_pred HHHHHHHHHHhhcCCChhhEEEEEEEcCc
Confidence 78889999999999999887777766663
No 18
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=40.04 E-value=74 Score=32.23 Aligned_cols=82 Identities=12% Similarity=0.241 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhccCcCCHHHHhhccc---chhhhhhhHHHHHhhc-cccchhhHHHHHHHHHH-HHHHHHHHH-HHH
Q 016058 17 VLLISVLGALMATQYWNLLTADARRSLNK---MVFTVFTPSLMFASLA-KTVTLEEIISWWFMPVN-VAMTFLIGG-ILG 90 (396)
Q Consensus 17 Vlli~~~G~~lA~~~~gil~~~~~k~lS~---l~~~~FlP~Lifs~la-~~lt~~~l~~~w~ipv~-~ll~~~~g~-~~g 90 (396)
-......|+++. ..|+++++.....++ .+...+++.+++. ++ ...+++++.+.-=.|.. ..+...+|. +.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 345566788788 899999987766544 4455577766652 33 45789888886412222 233334444 445
Q ss_pred HHHHHHhCCCC
Q 016058 91 WIVVKLLRPKP 101 (396)
Q Consensus 91 ~~~~~i~~~p~ 101 (396)
+++.|+++.=+
T Consensus 284 ~lvGKllG~YP 294 (347)
T TIGR00783 284 AFLGKLMGMYP 294 (347)
T ss_pred HHHHHHhCCCh
Confidence 68889988755
No 19
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=39.79 E-value=57 Score=33.36 Aligned_cols=103 Identities=16% Similarity=0.191 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhhccCcCCH-HHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 14 IVQVLLISVLGALMATQYWNLLTA-DARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWI 92 (396)
Q Consensus 14 v~kVlli~~~G~~lA~~~~gil~~-~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~~ll~~~~g~~~g~~ 92 (396)
..-+++++.+|...+ ....... +....++....++| |.-+|..-+++++.+-..+.+..++...+-..+-++
T Consensus 240 ~~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345667777787766 3333333 55566666666654 788999999999999555666666667777888888
Q ss_pred HHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHHH
Q 016058 93 VVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (396)
Q Consensus 93 ~~~i~~~p~~~~~~v~~~~~f~N~~~LPl~li~sL 127 (396)
+.|++|.|. ..+.-++-.|.+--+.+-..|-
T Consensus 313 ~~kl~k~~l----~~~~vAS~AnIGGpaTA~a~A~ 343 (378)
T PF05684_consen 313 LGKLFKIDL----FELLVASNANIGGPATAPAVAA 343 (378)
T ss_pred HHHHHCCCH----HHHHHHhhcccCCcchHHHHHH
Confidence 999999986 4444455566666666544333
No 20
>PRK11677 hypothetical protein; Provisional
Probab=36.03 E-value=41 Score=29.30 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016058 73 WFMPVNVAMTFLIGGILGWIVVKLLRPK 100 (396)
Q Consensus 73 w~ipv~~ll~~~~g~~~g~~~~~i~~~p 100 (396)
|.+. ++.+++|.++|+++.|++...
T Consensus 3 W~~a---~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYA---LIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHH---HHHHHHHHHHHHHHHhhccch
Confidence 5444 478889999999999975543
No 21
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=33.63 E-value=2e+02 Score=28.70 Aligned_cols=108 Identities=21% Similarity=0.264 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHH-HHHHHHHHHHHH
Q 016058 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPV-NVAMTFLIGGIL 89 (396)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv-~~ll~~~~g~~~ 89 (396)
.++.+-+++-..+|.++. =+|+|.||-+++-. .+..|-+-| .++..++++++.+=..-=+ -.+++..+....
T Consensus 168 ~~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG-----NLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 577888899999999886 57999999998864 566777766 5899999999988763222 234444555555
Q ss_pred HHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHHH
Q 016058 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126 (396)
Q Consensus 90 g~~~~~i~~~p~~~~~~v~~~~~f~N~~~LPl~li~s 126 (396)
.++.-|..+-.+. .-..=..+..||.-.-|-++-++
T Consensus 241 ~~~~dr~i~~~~g-~aG~A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 241 LYLADRLILKGNG-VAGAAISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHHHHHcCCCC-ceeehHHhhhhhhhhhhHHHHHh
Confidence 6666776432221 12333456789999999885443
No 22
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.29 E-value=59 Score=24.09 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 016058 73 WFMPVNVAMTFLIGGILGWIVVKLL 97 (396)
Q Consensus 73 w~ipv~~ll~~~~g~~~g~~~~~i~ 97 (396)
+++.+.+++++++|+++||++....
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888999999999887543
No 23
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=31.28 E-value=1.4e+02 Score=26.29 Aligned_cols=47 Identities=15% Similarity=0.399 Sum_probs=34.7
Q ss_pred HHHHhhccccchhhHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 016058 55 LMFASLAKTVTLEEIIS---WWF-MPVNVAMTFLIGGILGWIVVKLLRPKP 101 (396)
Q Consensus 55 Lifs~la~~lt~~~l~~---~w~-ipv~~ll~~~~g~~~g~~~~~i~~~p~ 101 (396)
++-..+|.++|.|++++ +|. .-...+++..++.+.+|++.|.++.|.
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 35578899998776555 443 344446666889999999999999885
No 24
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=30.43 E-value=3.4e+02 Score=28.07 Aligned_cols=103 Identities=14% Similarity=0.305 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhccCcCCHHHHhhcccch-----hhhhhhHHHHHhhc---cccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 20 ISVLGALMATQYWNLLTADARRSLNKMV-----FTVFTPSLMFASLA---KTVTLEEIISWWFMPVNVAMTFLIGGILGW 91 (396)
Q Consensus 20 i~~~G~~lA~~~~gil~~~~~k~lS~l~-----~~~FlP~Lifs~la---~~lt~~~l~~~w~ipv~~ll~~~~g~~~g~ 91 (396)
..++-.++. +.|+++++..|..+... .++|.+||+.-++- +.+=.+.++.+ +|. ++...+.+.+.|.
T Consensus 82 ~~fvaa~~v--~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~--i~~-il~g~v~A~~~g~ 156 (438)
T COG3493 82 ALFVAAYLV--FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRY--IPP-ILAGMVGAAAVGI 156 (438)
T ss_pred HHHHHHHHH--HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhh--hHH-HHHHHHHHHHHHH
Confidence 334445566 78999999999988764 48999999987763 23345666676 333 3444555666677
Q ss_pred HHHHHhCCCC--CCCCeeEEEeecCC-cchhHHHHHHHH
Q 016058 92 IVVKLLRPKP--HLEGLVIATCASGN-LGNLLLIIVPAI 127 (396)
Q Consensus 92 ~~~~i~~~p~--~~~~~v~~~~~f~N-~~~LPl~li~sL 127 (396)
++.-+++.+. ..-+.+++.-+=|| -|.+|++.+.|=
T Consensus 157 lVG~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs~ 195 (438)
T COG3493 157 LVGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYSS 195 (438)
T ss_pred HHHHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHHH
Confidence 7777777764 34555666555555 488999988553
No 25
>COG2323 Predicted membrane protein [Function unknown]
Probab=28.89 E-value=1.4e+02 Score=28.28 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIV 93 (396)
Q Consensus 14 v~kVlli~~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~~ll~~~~g~~~g~~~ 93 (396)
++|.+++..+++++. |. .++|++|++...=|.=.+++..++.....++=...|..-+.+++..++.++++|+.
T Consensus 8 ~ir~vi~~~~l~l~~--ri-----~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--RI-----MGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--HH-----hCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665 33 67889999999888889999999998887775666665555666667778888887
Q ss_pred HHHhCCCC
Q 016058 94 VKLLRPKP 101 (396)
Q Consensus 94 ~~i~~~p~ 101 (396)
.|--++-+
T Consensus 81 ~ks~~~r~ 88 (224)
T COG2323 81 LKSRKLRK 88 (224)
T ss_pred hccHHHHH
Confidence 76655544
No 26
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.86 E-value=56 Score=28.05 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC
Q 016058 79 VAMTFLIGGILGWIVVKLLRPK 100 (396)
Q Consensus 79 ~ll~~~~g~~~g~~~~~i~~~p 100 (396)
+++.+++|.++|+++.|++.-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5678899999999999987655
No 27
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=28.52 E-value=84 Score=31.50 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 016058 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIV 93 (396)
Q Consensus 15 ~kVlli~~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~-w~ipv~~ll~~~~g~~~g~~~ 93 (396)
+.+++...+|..+. | ++++.++..++= .++.+|+-.|. +|.+++.+++.+- +..++-.+...++...+++..
T Consensus 174 i~allplliG~~lg----n-l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG----N-LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH----h-HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 56668899999887 4 777666665554 45599999888 9999999999777 455554444445555557777
Q ss_pred HHHhCCCCCCCCeeEEEeecCCcchhHHH
Q 016058 94 VKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (396)
Q Consensus 94 ~~i~~~p~~~~~~v~~~~~f~N~~~LPl~ 122 (396)
-|+++..+...+. -...+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g~-a~~ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAGA-AAGSTAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcchH-HHHHHHHHHHHHHHH
Confidence 7888654432222 222345665544544
No 28
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=28.02 E-value=1.6e+02 Score=30.24 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=48.1
Q ss_pred HHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 016058 37 ADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFM-PVNVAMTFLIGGILGWIVVKLLRPKP 101 (396)
Q Consensus 37 ~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~i-pv~~ll~~~~g~~~g~~~~~i~~~p~ 101 (396)
++..+++..+...+|.| +-|.++|-+++++.+.+.|.. .....+....=....++..|.++.++
T Consensus 264 ~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~ 328 (397)
T COG0475 264 HELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSK 328 (397)
T ss_pred HHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 57888888888888887 679999999999999998877 33333333444455788889998654
No 29
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=27.94 E-value=4.2e+02 Score=26.94 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=49.2
Q ss_pred HHHhhccccchhhHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEE----eecCCcchhHHHHHHHH
Q 016058 56 MFASLAKTVTLEEIISWWF--MPVN--VAMTFLIGGILGWIVVKLLRPKPHLEGLVIAT----CASGNLGNLLLIIVPAI 127 (396)
Q Consensus 56 ifs~la~~lt~~~l~~~w~--ipv~--~ll~~~~g~~~g~~~~~i~~~p~~~~~~v~~~----~~f~N~~~LPl~li~sL 127 (396)
.|+.++=+-+.+++++-|- .+.+ ..+...+..++|..+.+++..++. .+..... ++.|..... =+..
T Consensus 73 fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhGTAaa~----g~~f 147 (368)
T PF03616_consen 73 FFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHGTAAAF----GPTF 147 (368)
T ss_pred HHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHhccccccCCccHHHHH----HHHH
Confidence 4777777777777776652 1111 123346788888888888888763 2332221 111221111 1222
Q ss_pred hhcCCCCCCChhhhhhhhhHHHHHHhhhcc
Q 016058 128 CHEQGSPFGNRDVCSSVGLSYKALAQAAEP 157 (396)
Q Consensus 128 ~~~~~~~f~~~~~~~~rg~aY~~i~~~~g~ 157 (396)
.+. +| -+.+.+-|+++..+....|.
T Consensus 148 e~~----~G-~~~a~~vg~a~AT~Glv~G~ 172 (368)
T PF03616_consen 148 EEL----YG-WEGATSVGMAAATFGLVVGG 172 (368)
T ss_pred HHh----cC-hhhhHHHHHHHHHHHHHHHH
Confidence 211 12 13477888988877765444
No 30
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=27.10 E-value=74 Score=31.54 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=36.0
Q ss_pred hccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHhCCCCCCCC
Q 016058 60 LAKTVTLEEIISWWF-MPVNVAMTFLIGGILGWIVV-KLLRPKPHLEG 105 (396)
Q Consensus 60 la~~lt~~~l~~~w~-ipv~~ll~~~~g~~~g~~~~-~i~~~p~~~~~ 105 (396)
+|-+++++++.+++. ..+...+.......+++.+. |.+|+|++..-
T Consensus 69 lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~ 116 (305)
T PF03601_consen 69 LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAI 116 (305)
T ss_pred HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 788999999999987 33335666677788888888 99999986543
No 31
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=27.08 E-value=1e+02 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=17.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016058 65 TLEEIISWWFMPVNVAMTFLIGGILGWIVVKLL 97 (396)
Q Consensus 65 t~~~l~~~w~ipv~~ll~~~~g~~~g~~~~~i~ 97 (396)
+++|+.++ ++++.++.+.+||+..+-+
T Consensus 2 ~i~DiiQi------i~l~AlI~~pLGyl~~~~~ 28 (62)
T PF11120_consen 2 NISDIIQI------IILCALIFFPLGYLARRWL 28 (62)
T ss_pred CHHHHHHH------HHHHHHHHHhHHHHHHHHh
Confidence 56788887 3445555666677766554
No 32
>PRK05326 potassium/proton antiporter; Reviewed
Probab=26.87 E-value=3.2e+02 Score=29.26 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHHHHHhhccCcCCHHHHhhcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHhCC
Q 016058 22 VLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIG-GILGWIVVKLLRP 99 (396)
Q Consensus 22 ~~G~~lA~~~~gil~~~~~k~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~-~ll~~~~g-~~~g~~~~~i~~~ 99 (396)
..|..++ +.....++..++..+-.-.++.|. .|..+|-.++++++.+.|..-+. .++...++ .+..++..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4455555 333344444444455455667755 79999999999988776432221 11222222 2333444566777
Q ss_pred CCCCCCeeEEEeecCCcchhHHHHH
Q 016058 100 KPHLEGLVIATCASGNLGNLLLIIV 124 (396)
Q Consensus 100 p~~~~~~v~~~~~f~N~~~LPl~li 124 (396)
|.+++-++--+ |-=|..|+++-
T Consensus 329 ~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 329 NLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CHhhhheeeee---cchhHHHHHHH
Confidence 76655444332 45777887654
No 33
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=26.58 E-value=1.4e+02 Score=23.39 Aligned_cols=53 Identities=13% Similarity=0.297 Sum_probs=26.0
Q ss_pred chhhhhhhHHH---HHhhccccchhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhC
Q 016058 46 MVFTVFTPSLM---FASLAKTVTLEEIISWWFMPVN----------VAMTFLIGGILGWIVVKLLR 98 (396)
Q Consensus 46 l~~~~FlP~Li---fs~la~~lt~~~l~~~w~ipv~----------~ll~~~~g~~~g~~~~~i~~ 98 (396)
....+|.|||+ |+.+-.+-=...+...+.|-.+ .++.-++|...|++..+-..
T Consensus 3 ~~~Al~~P~lLVvlFtrVT~n~~vg~~lt~~Li~ASvykGyt~~~~ii~iD~~Sl~aGf~~a~~m~ 68 (74)
T PF09964_consen 3 YLLALFFPCLLVVLFTRVTYNHYVGTILTVALIAASVYKGYTHTWWIIFIDAVSLTAGFLYAKKML 68 (74)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788874 4443333323333344333332 23334667777776665433
No 34
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.62 E-value=1.2e+02 Score=23.48 Aligned_cols=24 Identities=21% Similarity=0.580 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 72 WWFMPVNVAMTFLIGGILGWIVVK 95 (396)
Q Consensus 72 ~w~ipv~~ll~~~~g~~~g~~~~~ 95 (396)
+|...+.+.++.++|.+.|++++|
T Consensus 3 l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455557788888899999987764
No 35
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=24.65 E-value=3.7e+02 Score=25.60 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=49.5
Q ss_pred ccchhhhhhhHHHHHhhccccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHH
Q 016058 44 NKMVFTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (396)
Q Consensus 44 S~l~~~~FlP~Lifs~la~~lt~~~l~~~w-~ipv~~ll~~~~g~~~g~~~~~i~~~p~~~~~~v~~~~~f~N~~~LPl~ 122 (396)
++..-.+.-|+-+-=-+-=+=..+.++++| ++-..+++-..+++..++++.|.+..+++.. .+..+-+-.-|++
T Consensus 61 ~~~i~~lLgPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~-----~Sl~PkSvTTpiA 135 (230)
T COG1346 61 GQWINFLLGPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELI-----LSLLPKSVTTPIA 135 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-----HHhcccccccHHH
Confidence 444455555655443333333677888877 6777778888999999999999999997432 2334444455655
Q ss_pred H
Q 016058 123 I 123 (396)
Q Consensus 123 l 123 (396)
+
T Consensus 136 m 136 (230)
T COG1346 136 M 136 (230)
T ss_pred H
Confidence 3
No 36
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=24.36 E-value=1.5e+02 Score=30.13 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=35.1
Q ss_pred HHHHHhhccccchh---hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCC
Q 016058 54 SLMFASLAKTVTLE---EIISWWFMPVNV-AMTFLIGGILGWIVVKLLRPKP 101 (396)
Q Consensus 54 ~Lifs~la~~lt~~---~l~~~w~ipv~~-ll~~~~g~~~g~~~~~i~~~p~ 101 (396)
..+-..+|.++|.| ++++.|++-+.. +++..+|...||+..|.-+.|+
T Consensus 65 ~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~ 116 (352)
T COG3180 65 VILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPG 116 (352)
T ss_pred HHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34556788888765 556667666555 4555889999999999987775
No 37
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=21.52 E-value=1.4e+02 Score=26.50 Aligned_cols=71 Identities=31% Similarity=0.534 Sum_probs=51.0
Q ss_pred HHHHHHhhccCcCCHHHHh----hcccchhhhhhhHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 016058 23 LGALMATQYWNLLTADARR----SLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLR 98 (396)
Q Consensus 23 ~G~~lA~~~~gil~~~~~k----~lS~l~~~~FlP~Lifs~la~~lt~~~l~~~w~ipv~~ll~~~~g~~~g~~~~~i~~ 98 (396)
.|++++ |++=+.++| .+..+.-+-..=+++-.-+++-+.-++...+.++|- .+..++.|..+|+++.|.+|
T Consensus 74 ~GA~la----Gllyr~~~k~~~a~lGEviGTGiIGal~sypva~~~~g~~~~~~~~v~~-F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 74 FGALLA----GLLYRKTKKLWAAALGEVIGTGIIGALLSYPVAKLFMGKEAALFFFVPP-FLISTLIGAIIGYILLKALK 148 (150)
T ss_pred HHHHHH----HHHHHHhCcchHHHHHHHHhhHHHHHHHHHHHHHHHhCCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 466666 555555555 355566677777777777777776666666666666 67889999999999998876
No 38
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=20.57 E-value=1.3e+02 Score=21.37 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 016058 66 LEEIISWWFMPVNVAMTFLIGGILGWIVVKLLR 98 (396)
Q Consensus 66 ~~~l~~~w~ipv~~ll~~~~g~~~g~~~~~i~~ 98 (396)
.+++.+|-|=-+.+++..++|+.++..+.++.+
T Consensus 8 ~~~ii~~lP~iv~AilIl~vG~~va~~v~~~~~ 40 (53)
T PF05552_consen 8 LDQIIAYLPNIVGAILILIVGWWVAKFVRKLVR 40 (53)
T ss_dssp -----GGHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677767667778888888888888887653
No 39
>PRK01844 hypothetical protein; Provisional
Probab=20.45 E-value=1.7e+02 Score=22.75 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 72 WWFMPVNVAMTFLIGGILGWIVVKL 96 (396)
Q Consensus 72 ~w~ipv~~ll~~~~g~~~g~~~~~i 96 (396)
.|+.-+..++..++|.+.|+.+.|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554445667888899999887653
Done!