Query 016058
Match_columns 396
No_of_seqs 115 out of 268
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.2 0.00079 2.7E-08 65.9 8.2 137 237-392 19-156 (332)
2 3zux_A Transporter, ASBTNM; tr 88.2 0.6 2.1E-05 45.2 5.8 48 77-125 232-279 (332)
3 1q90_G Cytochrome B6F complex 7.7 1.6E+02 0.0056 18.9 1.3 11 243-253 6-16 (37)
4 4f4l_A ION transport protein; 7.4 2.7E+02 0.0092 21.8 2.9 47 113-159 36-84 (112)
5 1wrg_A LH-1, light-harvesting 6.8 5.6E+02 0.019 17.8 3.9 37 63-99 10-46 (55)
6 2knc_A Integrin alpha-IIB; tra 6.8 5.4E+02 0.019 17.8 3.8 35 296-334 6-40 (54)
7 2nwl_A GLTPH, glutamate sympor 4.9 1E+03 0.034 23.2 6.0 53 49-101 55-111 (422)
8 2l8s_A Integrin alpha-1; trans 4.8 8.9E+02 0.03 16.7 3.9 33 298-334 5-37 (54)
9 1tm9_A GI3844938, hypothetical 4.4 5.7E+02 0.019 20.2 3.0 19 317-335 94-112 (137)
10 1q90_M Cytochrome B6F complex 3.9 9E+02 0.031 15.6 4.4 24 75-98 9-32 (39)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.18 E-value=0.00079 Score=65.86 Aligned_cols=137 Identities=12% Similarity=-0.017 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHhcchHHHHhhccCCCcchhhHHHHHHhcCcchhhHHhhhccccccc-cccCCCCCcchhhhHHHHHHH
Q 016058 237 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIA 315 (396)
Q Consensus 237 Pp~ia~ilg~iiglippLr~lf~~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g-~~~s~~~~~~iv~iv~~Rlii 315 (396)
+-++..+++.++|..-|=. ..++...+ ...+.++++..|.++... .++.--++|......+.++++
T Consensus 19 ~~~l~i~~~~~lg~~~P~~---------~~~~~~~i----~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi 85 (332)
T 3zux_A 19 TFSLWAALFAAAAFFAPDT---------FKWAGPYI----PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI 85 (332)
T ss_dssp THHHHHHHHHHHHHHCGGG---------TGGGGGGH----HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcchh---------hhhhHHHH----HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3466777777777664321 11122122 246889999999999741 221123457777888999999
Q ss_pred HhHHHHHHHHHHHHhCCCCCChhHHHHHhhccCCchhHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016058 316 LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 392 (396)
Q Consensus 316 lP~igi~iv~~~~~~g~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~il~w~Y~~~~islt~~~~~~l 392 (396)
+|+++..+.+.+ +.||.+...+++..|.|++.+...+|++.+-..+-.......+-.++.+++|+|..+++
T Consensus 86 ~Pll~~~l~~~~------~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 86 MPATAWCLSKLL------NLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHT------TCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------CCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999887643 67999999999999999999988899988865555666666899999999999988775
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=88.18 E-value=0.6 Score=45.23 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEEeecCCcchhHHHHHH
Q 016058 77 VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVP 125 (396)
Q Consensus 77 v~~ll~~~~g~~~g~~~~~i~~~p~~~~~~v~~~~~f~N~~~LPl~li~ 125 (396)
+..++...+++.+||.+.|.+|.+++.|.-+.-.|+..|+ .+-+.+..
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~ 279 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAA 279 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHH
Confidence 3467778999999999999999999888777777888998 34444433
No 3
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=7.70 E-value=1.6e+02 Score=18.85 Aligned_cols=11 Identities=27% Similarity=0.603 Sum_probs=7.4
Q ss_pred HHHHHHhcchH
Q 016058 243 IVGFIFGAVVW 253 (396)
Q Consensus 243 ilg~iiglipp 253 (396)
+.|++.|+||-
T Consensus 6 L~GIVlGlipv 16 (37)
T 1q90_G 6 LCGIVLGLVPV 16 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHhhHHH
Confidence 56777777773
No 4
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=7.35 E-value=2.7e+02 Score=21.79 Aligned_cols=47 Identities=11% Similarity=-0.060 Sum_probs=22.1
Q ss_pred cCCcchhHHHHHHHHhhcCCC--CCCChhhhhhhhhHHHHHHhhhcccc
Q 016058 113 SGNLGNLLLIIVPAICHEQGS--PFGNRDVCSSVGLSYKALAQAAEPEE 159 (396)
Q Consensus 113 f~N~~~LPl~li~sL~~~~~~--~f~~~~~~~~rg~aY~~i~~~~g~~~ 159 (396)
|+|.++=-+.+.+-++.|+=. -..+..+....+..|+..+..+|++.
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi 84 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFT 84 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 666666556666666554311 11111111223445666665666543
No 5
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=6.78 E-value=5.6e+02 Score=17.82 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=29.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016058 63 TVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (396)
Q Consensus 63 ~lt~~~l~~~w~ipv~~ll~~~~g~~~g~~~~~i~~~ 99 (396)
-+|.++-+|++-+-+.....+..=.+++.++....|+
T Consensus 10 GLT~~EAqEfH~~f~~~~~~F~~iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 10 GITEGEAKEFHKIFTSSILVFFGVAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999988888888777777778888777664
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.75 E-value=5.4e+02 Score=17.79 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=23.2
Q ss_pred ccCCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 016058 296 RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP 334 (396)
Q Consensus 296 ~~s~~~~~~iv~iv~~RliilP~igi~iv~~~~~~g~~~ 334 (396)
+...+|++.++..++.=++++.++-. .++|.|+..
T Consensus 6 ~~~~vp~wiIi~svl~GLllL~li~~----~LwK~GFFk 40 (54)
T 2knc_A 6 EERAIPIWWVLVGVLGGLLLLTILVL----AMWKVGFFK 40 (54)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHTT
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHH----HHHHcCccc
Confidence 45568989888888887777665443 444555543
No 7
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=4.87 E-value=1e+03 Score=23.19 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=40.4
Q ss_pred hhhhhHHHHHhhccccc-h--hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 016058 49 TVFTPSLMFASLAKTVT-L--EEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKP 101 (396)
Q Consensus 49 ~~FlP~Lifs~la~~lt-~--~~l~~~-w~ipv~~ll~~~~g~~~g~~~~~i~~~p~ 101 (396)
....|=|+|..+...+. . +++.++ +-.-.++++++.++..+|.++..++++-.
T Consensus 55 kmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~ 111 (422)
T 2nwl_A 55 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGA 111 (422)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45567788888888774 3 566554 35667788888999999999999998765
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=4.78 E-value=8.9e+02 Score=16.71 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCCCCcchhhhHHHHHHHHhHHHHHHHHHHHHhCCCC
Q 016058 298 STLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP 334 (396)
Q Consensus 298 s~~~~~~iv~iv~~RliilP~igi~iv~~~~~~g~~~ 334 (396)
..+|++.|+..++.=++++.++- ..++|.|+..
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii----~~LwK~GFFK 37 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLI----LALWKIGFFK 37 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHH----HHHHHHHHTT
T ss_pred ccCchHHHHHHHHHHHHHHHHHH----HHHHHcCccc
Confidence 46788888888877777766543 4445566554
No 9
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=4.44 E-value=5.7e+02 Score=20.18 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHhCCCCC
Q 016058 317 PFIGVWVVKAAAALGFLPS 335 (396)
Q Consensus 317 P~igi~iv~~~~~~g~~~~ 335 (396)
|+|...+.+.++++|++.|
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T 1tm9_A 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 4555667788899999875
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=3.95 E-value=9e+02 Score=15.58 Aligned_cols=24 Identities=13% Similarity=0.378 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 016058 75 MPVNVAMTFLIGGILGWIVVKLLR 98 (396)
Q Consensus 75 ipv~~ll~~~~g~~~g~~~~~i~~ 98 (396)
+...+...+.+|..+|+++-|+-+
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444456677889999999888754
Done!