Query 016058
Match_columns 396
No_of_seqs 115 out of 268
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 07:10:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016058.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016058hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 31.0 16 0.0012 21.2 2.4 29 232-260 5-33 (34)
2 d1q90g_ f.23.26.1 (G:) PetG su 7.7 80 0.0058 17.6 1.3 12 242-253 5-16 (30)
3 d1q90r_ f.23.12.1 (R:) ISP sub 5.3 2E+02 0.015 17.1 2.4 29 232-260 10-38 (39)
4 d1jo5a_ f.3.1.1 (A:) Light-har 5.0 3.6E+02 0.026 16.7 3.6 38 62-99 9-46 (48)
5 d1lghb_ f.3.1.1 (B:) Light-har 4.7 3.8E+02 0.028 16.2 5.5 38 62-99 4-41 (43)
6 d1tm9a_ a.225.1.1 (A:) Hypothe 4.4 2.7E+02 0.019 20.2 3.0 19 317-335 94-112 (137)
7 d1jb0m_ f.23.19.1 (M:) Subunit 3.4 2.9E+02 0.021 15.3 1.8 15 242-256 8-22 (31)
8 d1tbaa_ a.15.1.1 (A:) TAF(II)2 2.9 1.6E+02 0.012 19.5 0.3 14 34-47 37-50 (67)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 2.5 4.1E+02 0.03 14.4 1.8 18 239-256 11-28 (32)
10 d1ldda_ a.4.5.34 (A:) Anaphase 2.4 3.4E+02 0.025 18.3 1.6 11 373-383 8-18 (74)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=30.98 E-value=16 Score=21.15 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.2
Q ss_pred HhhcChhHHHHHHHHHHhcchHHHHhhcc
Q 016058 232 EELLAPPTLAAIVGFIFGAVVWLRNLIIG 260 (396)
Q Consensus 232 ~~~~~Pp~ia~ilg~iiglippLr~lf~~ 260 (396)
++|||=-+.+.+-|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 57888889999999999999999888764
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.71 E-value=80 Score=17.65 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=8.6
Q ss_pred HHHHHHHhcchH
Q 016058 242 AIVGFIFGAVVW 253 (396)
Q Consensus 242 ~ilg~iiglipp 253 (396)
.+.|++.|+||-
T Consensus 5 ll~GivlGlipi 16 (30)
T d1q90g_ 5 LLCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHhhHHH
Confidence 356788888884
No 3
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.34 E-value=2e+02 Score=17.10 Aligned_cols=29 Identities=3% Similarity=-0.129 Sum_probs=21.3
Q ss_pred HhhcChhHHHHHHHHHHhcchHHHHhhcc
Q 016058 232 EELLAPPTLAAIVGFIFGAVVWLRNLIIG 260 (396)
Q Consensus 232 ~~~~~Pp~ia~ilg~iiglippLr~lf~~ 260 (396)
+++||=-+.|++-+-..|+.-|.-+.|+.
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFvP 38 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFVP 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccchhhhhhccceeEEecC
Confidence 46666668888888888887777776653
No 4
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.04 E-value=3.6e+02 Score=16.66 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=28.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016058 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (396)
Q Consensus 62 ~~lt~~~l~~~w~ipv~~ll~~~~g~~~g~~~~~i~~~ 99 (396)
+-+|-++.+|+--+-+..+..|..-++++.++..+.|+
T Consensus 9 tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp GGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35678888888777777777777777788888888775
No 5
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=4.74 E-value=3.8e+02 Score=16.15 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 016058 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (396)
Q Consensus 62 ~~lt~~~l~~~w~ipv~~ll~~~~g~~~g~~~~~i~~~ 99 (396)
+.+|-++.+|.--+-+..+..|..-++++.++..+.|+
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45788888888877777788887778888888888775
No 6
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=4.44 E-value=2.7e+02 Score=20.18 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHhCCCCC
Q 016058 317 PFIGVWVVKAAAALGFLPS 335 (396)
Q Consensus 317 P~igi~iv~~~~~~g~~~~ 335 (396)
|+|...+.+.++++|++.|
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 4555667788899999875
No 7
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.37 E-value=2.9e+02 Score=15.27 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=9.6
Q ss_pred HHHHHHHhcchHHHH
Q 016058 242 AIVGFIFGAVVWLRN 256 (396)
Q Consensus 242 ~ilg~iiglippLr~ 256 (396)
..++++|+++|-+-+
T Consensus 8 v~valvial~pg~la 22 (31)
T d1jb0m_ 8 VYVALVIALLPAVLA 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356677777776543
No 8
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.88 E-value=1.6e+02 Score=19.55 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=12.8
Q ss_pred cCCHHHHhhcccch
Q 016058 34 LLTADARRSLNKMV 47 (396)
Q Consensus 34 il~~~~~k~lS~l~ 47 (396)
++|++.+|+|+.+.
T Consensus 37 ~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 37 GFDAELRENIGSLS 50 (67)
T ss_dssp SCCTTTHHHHTTCT
T ss_pred ccCHHHHHHHHHHh
Confidence 89999999999886
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.53 E-value=4.1e+02 Score=14.42 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcchHHHH
Q 016058 239 TLAAIVGFIFGAVVWLRN 256 (396)
Q Consensus 239 ~ia~ilg~iiglippLr~ 256 (396)
.++...|+.+|.+-.+|.
T Consensus 11 fialffgiavgiifaiks 28 (32)
T d2e74e1 11 FIALFFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhheeeEEE
Confidence 466777777777765553
No 10
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.37 E-value=3.4e+02 Score=18.30 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH
Q 016058 373 FLWTYLVAALA 383 (396)
Q Consensus 373 l~w~Y~~~~is 383 (396)
-||+|++..++
T Consensus 8 ~~w~yI~gMLt 18 (74)
T d1ldda_ 8 RSLPFIEGMLT 18 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 47999998765
Done!