BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016059
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 146/328 (44%), Gaps = 39/328 (11%)
Query: 46 LSLTYFDTYWIRFGSWDNLLFYEIRGLTWDSFSKVVXXXXXXXXXXXXXXXXXXAGHLMW 105
L LTYFD W+ F +LFY++ ++ F + + AG++
Sbjct: 22 LPLTYFDHVWLAFHRXRRILFYKLP-ISRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVAC 80
Query: 106 PPHAEKPAVCYSFPH-NYPKNDGVSVTVAESNADFDLLAGNGIRKAVEFYPLVPRLSTSD 164
P +P Y + VSV +ES+ DF+ L G R +FY VP+L+
Sbjct: 81 PQDWS------GYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRNTKDFYHFVPQLAEPK 134
Query: 165 DK-----AEVIAIQITLFPNHGFSICISINHAVLDGTSLMLFMKSWAYLCKQLDIHLQNK 219
D A V+AIQ+TLFPNHG SI + +H DG +++ F+++WA L K
Sbjct: 135 DAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNK-----FGGD 189
Query: 220 APSLPERLTPCFDRTLIKDPGGIDLVYVKHNMAFAGLDPNTRNLKPNPVDPKVADTNNLV 279
L P +DR++IKDP G+ + + K V + V
Sbjct: 190 EQFLANEFIPFYDRSVIKDPNGVG----------XSIWNEXKKYKHXXKXSDVVTPPDKV 239
Query: 280 RRTFELSSEDXXXXXXXXXXXXEQHQSKSKQLHLSSYVLTCAHVYACMVKAITE-----D 334
R TF ++ D + K H++S+ +TCA+V+ C++K+ D
Sbjct: 240 RGTFIITRHDIGKLKNLVLT------RRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEID 293
Query: 335 ANTTVVFSFNADCRSRLDPPLPVNYFGN 362
N F ADCR++ +PPLP +YFGN
Sbjct: 294 ENGXEFFGCAADCRAQFNPPLPPSYFGN 321
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 150/323 (46%), Gaps = 36/323 (11%)
Query: 46 LSLTYFDTYWIRFGSWDNLLFYEIRGLTWDSFSKVVXXXXXXXXXXXXXXXXXXAGHLM- 104
L LT+FD +W+R +NL FYE+ +T F++ V G L+
Sbjct: 27 LQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVV 85
Query: 105 WPPHAEKPAVCYSFPHNYPKNDGVSVTVAESNADFDLLAGNGIRKAVEFYPLVPRLSTSD 164
+P +KP +CY + D V+VT AE N D + L GN R +FY LVP L S
Sbjct: 86 YPAPTKKPEICYV------EGDSVAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGEST 139
Query: 165 DKAEVI-----AIQITLFPNHGFSICISINHAVLDGTSLMLFMKSWAYLCKQLDIHLQNK 219
++ I ++Q+TLFPN G +I I+ +H + D ++ F+K+W + + + N
Sbjct: 140 RLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN----ND 195
Query: 220 APSLPERLTPCFDRTLIKDPGGIDLVYVKHNMAFAGLDPNTRNLKPNPVDPKVADTNNLV 279
L P +DR +IK P +D Y+K + + V +A ++ +
Sbjct: 196 ESFLANGTRPLYDR-IIKYP-MLDEAYLKR--------AKVESFNEDYVTQSLAGPSDKL 245
Query: 280 RRTFELSSEDXXXXXXXXXXXXEQHQSKSKQLHLSSYVLTCAHVYACMVKAITEDANTTV 339
R TF L+ + ++SS+ + CA++++C+ K+ +
Sbjct: 246 RATFILTRAVINQLKDRVLAQLPTLE------YVSSFTVACAYIWSCIAKSRNDKLQ--- 296
Query: 340 VFSFNADCRSRLDPPLPVNYFGN 362
+F F D R+R+ PP+P YFGN
Sbjct: 297 LFGFPIDRRARMKPPIPTAYFGN 319
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 149/323 (46%), Gaps = 36/323 (11%)
Query: 46 LSLTYFDTYWIRFGSWDNLLFYEIRGLTWDSFSKVVXXXXXXXXXXXXXXXXXXAGHLM- 104
L LT+FD +W+R +NL FYE+ +T F++ V G L+
Sbjct: 27 LQLTFFDFFWLRSPPINNLFFYELP-ITRSQFTETVVPNIKHSLSITLKHFYPFVGKLVV 85
Query: 105 WPPHAEKPAVCYSFPHNYPKNDGVSVTVAESNADFDLLAGNGIRKAVEFYPLVPRLSTSD 164
+P +KP +CY + D V+VT AE N D + L GN R +FY LVP L S
Sbjct: 86 YPAPTKKPEICYV------EGDSVAVTFAECNLDLNELTGNHPRNCDKFYDLVPILGEST 139
Query: 165 DKAEVI-----AIQITLFPNHGFSICISINHAVLDGTSLMLFMKSWAYLCKQLDIHLQNK 219
++ I ++Q+TLFPN G +I I+ +H + D ++ F+K+W + + + N
Sbjct: 140 RLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN----ND 195
Query: 220 APSLPERLTPCFDRTLIKDPGGIDLVYVKHNMAFAGLDPNTRNLKPNPVDPKVADTNNLV 279
L P +DR +IK P +D Y+K + + V +A ++ +
Sbjct: 196 ESFLANGTRPLYDR-IIKYP-XLDEAYLKR--------AKVESFNEDYVTQSLAGPSDKL 245
Query: 280 RRTFELSSEDXXXXXXXXXXXXEQHQSKSKQLHLSSYVLTCAHVYACMVKAITEDANTTV 339
R TF L+ + ++SS+ + CA++++C+ K+ +
Sbjct: 246 RATFILTRAVINQLKDRVLAQLPTLE------YVSSFTVACAYIWSCIAKSRNDKLQ--- 296
Query: 340 VFSFNADCRSRLDPPLPVNYFGN 362
+F F D R+R PP+P YFGN
Sbjct: 297 LFGFPIDRRARXKPPIPTAYFGN 319
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 99/246 (40%), Gaps = 40/246 (16%)
Query: 125 NDGVSVTVAESNADFDLLAGNGIRKAVEFYPLVPRLSTSDDKAE--VIAIQITLFPNHGF 182
+GV AES+ D +E L+P + S + ++ +Q+T F G
Sbjct: 90 GEGVLFVEAESDGVVDDFGD--FAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGV 147
Query: 183 SICISINHAVLDGTSLMLFMKSWAYLCKQLDIHLQNKAPSLPERLTPCFDRTLIK--DPG 240
S+ + + H DG S + F+ SW+ + + LD+ L P DRTL++ DP
Sbjct: 148 SLGVGMRHHAADGFSGLHFINSWSDMARGLDV-----------TLPPFIDRTLLRARDPP 196
Query: 241 GIDLVYVKHNMAFAGLDPNTRNLKPNPVDPKVADTNNLVRRTFELSSEDXXXXXXXXXXX 300
++++ A LK +P K F+L+ E
Sbjct: 197 QPQFQHIEYQPPPA--------LKVSPQTAKSDSVPETAVSIFKLTREQISAL------- 241
Query: 301 XEQHQSKSKQ----LHLSSYVLTCAHVYACMVKAITEDANTTVVFSFNADCRSRLDPPLP 356
++KSK+ + SSY + HV+ C KA + + D R+RL P LP
Sbjct: 242 ----KAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLP 297
Query: 357 VNYFGN 362
YFGN
Sbjct: 298 PGYFGN 303
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 52/252 (20%)
Query: 125 NDGVSVTVAESNADFDLLAGNGIRKAVEFYPLVPRLSTSDDKAE--VIAIQITLFPNHGF 182
+GV AES+ D +E L+P + S + ++ +Q+T F G
Sbjct: 93 GEGVLFVEAESDGVVDDFGD--FAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGV 150
Query: 183 SICISINHAVLDGTSLMLFMKSWAYLCKQLDIHLQNKAPSLPERLTPCFDRTLIK--DPG 240
S+ + + H DG S + F+ SW+ + + LD+ L P DRTL++ DP
Sbjct: 151 SLGVGMRHHAADGFSGLHFINSWSDMARGLDV-----------TLPPFIDRTLLRARDPP 199
Query: 241 GIDLVYVKHNMAFAGLDPNTRNLKPNP---VDPKVADTNNLVRRT---FELSSEDXXXXX 294
++++ +P P V P+ A ++++ F+L+ E
Sbjct: 200 QPQFQHIEY--------------QPPPALAVSPQTAASDSVPETAVSIFKLTREQISAL- 244
Query: 295 XXXXXXXEQHQSKSKQ----LHLSSYVLTCAHVYACMVKAITEDANTTVVFSFNADCRSR 350
++KSK+ + SSY + HV+ C KA + + D R+R
Sbjct: 245 ----------KAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRAR 294
Query: 351 LDPPLPVNYFGN 362
L P LP YFGN
Sbjct: 295 LRPSLPPGYFGN 306
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 52/252 (20%)
Query: 125 NDGVSVTVAESNADFDLLAGNGIRKAVEFYPLVPRLSTSDDKAE--VIAIQITLFPNHGF 182
+GV AES+ D +E L+P + S + ++ +Q+T F G
Sbjct: 93 GEGVLFVEAESDGVVDDFGD--FAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGV 150
Query: 183 SICISINHAVLDGTSLMLFMKSWAYLCKQLDIHLQNKAPSLPERLTPCFDRTLIK--DPG 240
S+ + + H DG S + F+ SW+ + + LD+ L P DRTL++ DP
Sbjct: 151 SLGVGMRHHAADGFSGLHFINSWSDMARGLDV-----------TLPPFIDRTLLRARDPP 199
Query: 241 GIDLVYVKHNMAFAGLDPNTRNLKPNP---VDPKVADTNNLVRRT---FELSSEDXXXXX 294
++++ +P P V P+ A ++++ F+L+ E
Sbjct: 200 QPQFQHIEY--------------QPPPALAVSPQTAASDSVPETAVSIFKLTREQISAL- 244
Query: 295 XXXXXXXEQHQSKSKQ----LHLSSYVLTCAHVYACMVKAITEDANTTVVFSFNADCRSR 350
++KSK+ + SSY + HV+ C KA + + D R+R
Sbjct: 245 ----------KAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRAR 294
Query: 351 LDPPLPVNYFGN 362
L P LP YFGN
Sbjct: 295 LRPSLPPGYFGN 306
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 55/231 (23%)
Query: 144 GNGIRKAVEFYPL---VPRLSTSDDKAEV-----IAIQITLFPNHGFSICISINHAVLDG 195
I+ VE L +P + K EV +A++I+ F G +I ++++H + D
Sbjct: 106 SQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADV 165
Query: 196 TSLMLFMKSWAYLCKQLDIHLQNKAPSLPERLTPCFDRTLIKDPGGIDLVYVKHNMAFAG 255
SL F+ +W C+ G ++V ++A
Sbjct: 166 LSLATFLNAWTATCR-----------------------------GETEIVLPNFDLA--- 193
Query: 256 LDPNTRNLKP--NPVDPKVADTNNLVRRTFELSSEDXXXXXXXXXXXXEQHQSKSKQLHL 313
R+ P N P++ N+V + F E Q S S++ +
Sbjct: 194 ----ARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRA-------QASSASEEKNF 242
Query: 314 SSYVLTCAHVYACMVKAITED--ANTTVVFSFNADCRSRLDPPLPVNYFGN 362
S L A+++ ++ A V + RSR++PPLP GN
Sbjct: 243 SRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGN 293
>pdb|2XHG|A Chain A, Crystal Structure Of The Epimerization Domain From The
Initiation Module Of Tyrocidine Biosynthesis
Length = 466
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 139 FDLLAGNGIRKAVEFYPLVPRLSTSDDKAEVIAIQITLFPN-HGFSICISINHAVLDGTS 197
++L A +++A+E RL +S + E +++ LF HG + ++I+H V+DG S
Sbjct: 97 YNLTAQPDVQQAIE--AETQRLHSSMNLQEGPLVKVALFQTLHGDHLFLAIHHLVVDGIS 154
Query: 198 LMLFMKSWAYLCKQLDIHLQNKAPSLPER 226
+ + A Q L +A SLPE+
Sbjct: 155 WRILFEDLATGYAQA---LAGQAISLPEK 180
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 194 DGTSLML---FMKSWAY-LCKQLDIHLQNKAPSLPERLTPCFDRTLIKDPGGIDLVYVKH 249
DG ++L ++K W + DI+ NK + E P + + P G L YV +
Sbjct: 80 DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPANTQWVTWSPVGHKLAYVWN 139
Query: 250 NMAFAGLDPN 259
N + ++PN
Sbjct: 140 NDIYVKIEPN 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,785,154
Number of Sequences: 62578
Number of extensions: 384815
Number of successful extensions: 544
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 10
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)