Query 016060
Match_columns 396
No_of_seqs 200 out of 303
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 03:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1971 Lysyl hydroxylase [Pos 100.0 2.7E-63 5.9E-68 498.6 14.3 343 42-385 29-396 (415)
2 PRK05467 Fe(II)-dependent oxyg 99.8 5.8E-20 1.3E-24 175.0 14.9 159 168-351 2-182 (226)
3 smart00702 P4Hc Prolyl 4-hydro 99.8 4.9E-19 1.1E-23 159.1 13.3 162 166-345 1-178 (178)
4 PLN00052 prolyl 4-hydroxylase; 99.5 7.2E-14 1.6E-18 138.8 12.4 175 165-351 53-257 (310)
5 PHA02813 hypothetical protein; 99.3 9.4E-12 2E-16 124.9 11.0 154 166-342 5-178 (354)
6 COG3128 PiuC Uncharacterized i 99.1 6.6E-10 1.4E-14 103.8 11.7 164 167-351 3-185 (229)
7 KOG1971 Lysyl hydroxylase [Pos 99.1 4.1E-11 8.8E-16 122.3 3.0 113 111-231 290-415 (415)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.0 4.2E-10 9.2E-15 91.9 4.7 83 253-345 3-100 (100)
9 PHA02869 C4L/C10L-like gene fa 99.0 2.7E-09 5.8E-14 108.9 10.7 82 243-342 98-187 (418)
10 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.4 4.4E-07 9.6E-12 74.0 4.6 79 251-345 4-97 (98)
11 KOG1591 Prolyl 4-hydroxylase a 98.1 1.6E-05 3.6E-10 78.9 10.6 160 165-347 96-285 (289)
12 PF05721 PhyH: Phytanoyl-CoA d 97.2 0.0061 1.3E-07 53.8 11.9 169 167-338 5-210 (211)
13 PF09859 Oxygenase-NA: Oxygena 97.2 0.00078 1.7E-08 62.3 6.2 82 252-342 65-168 (173)
14 PF12851 Tet_JBP: Oxygenase do 97.1 0.0009 2E-08 61.6 5.8 72 260-345 83-170 (171)
15 TIGR02408 ectoine_ThpD ectoine 96.7 0.033 7.1E-07 54.5 13.6 175 166-347 28-249 (277)
16 TIGR01762 chlorin-enz chlorina 96.7 0.037 8.1E-07 54.8 14.0 40 308-347 208-250 (288)
17 PF13661 2OG-FeII_Oxy_4: 2OG-F 96.3 0.0058 1.2E-07 48.1 4.2 40 253-294 15-66 (70)
18 TIGR02466 conserved hypothetic 96.1 0.17 3.6E-06 48.1 13.6 88 250-339 97-193 (201)
19 PF13532 2OG-FeII_Oxy_2: 2OG-F 95.8 0.13 2.8E-06 46.6 11.3 154 167-341 1-192 (194)
20 PF13759 2OG-FeII_Oxy_5: Putat 95.4 0.056 1.2E-06 44.9 6.7 87 252-340 3-98 (101)
21 COG3826 Uncharacterized protei 94.8 0.058 1.3E-06 51.3 5.6 83 251-342 126-230 (236)
22 PRK15401 alpha-ketoglutarate-d 94.4 0.47 1E-05 45.6 10.9 158 162-342 14-210 (213)
23 PF03336 Pox_C4_C10: Poxvirus 92.8 0.22 4.8E-06 50.9 6.1 81 245-341 76-164 (339)
24 PLN03001 oxidoreductase, 2OG-F 87.2 1.4 3E-05 43.2 6.2 71 261-347 132-214 (262)
25 PLN02276 gibberellin 20-oxidas 87.1 1.9 4.2E-05 44.0 7.3 78 253-346 210-303 (361)
26 PLN02904 oxidoreductase 86.8 2 4.3E-05 43.9 7.2 79 253-347 212-306 (357)
27 PLN02365 2-oxoglutarate-depend 86.0 2.1 4.6E-05 42.5 6.8 73 260-345 164-248 (300)
28 PLN02947 oxidoreductase 85.3 2.8 6.1E-05 43.2 7.5 71 261-347 241-323 (374)
29 PLN00417 oxidoreductase, 2OG-F 84.1 3.2 6.9E-05 42.3 7.1 80 253-347 207-302 (348)
30 KOG3710 EGL-Nine (EGLN) protei 84.0 4.3 9.3E-05 40.1 7.6 90 250-351 144-244 (280)
31 PLN02984 oxidoreductase, 2OG-F 83.7 3.7 8.1E-05 41.8 7.5 80 253-348 204-300 (341)
32 COG3751 EGL-9 Predicted prolin 83.3 3.8 8.2E-05 40.6 7.0 88 253-347 140-241 (252)
33 PLN02216 protein SRG1 82.8 3.5 7.6E-05 42.1 6.9 80 253-347 214-309 (357)
34 PLN02156 gibberellin 2-beta-di 82.8 3.1 6.8E-05 42.2 6.5 80 253-347 182-279 (335)
35 PLN02750 oxidoreductase, 2OG-F 82.6 3.5 7.5E-05 41.8 6.7 82 253-348 197-294 (345)
36 PLN03178 leucoanthocyanidin di 82.5 3.8 8.2E-05 41.8 7.0 71 261-347 227-309 (360)
37 PLN02912 oxidoreductase, 2OG-F 82.3 3.9 8.4E-05 41.7 7.0 79 253-347 201-295 (348)
38 PTZ00273 oxidase reductase; Pr 81.4 3.6 7.9E-05 41.0 6.3 80 253-348 181-277 (320)
39 PLN02485 oxidoreductase 81.4 2.3 4.9E-05 42.7 4.8 74 261-348 204-289 (329)
40 PLN02254 gibberellin 3-beta-di 80.0 4 8.7E-05 41.8 6.2 80 253-347 214-309 (358)
41 PLN02515 naringenin,2-oxogluta 79.9 4.5 9.8E-05 41.4 6.5 82 253-348 199-296 (358)
42 PLN02704 flavonol synthase 78.9 5.9 0.00013 40.0 6.9 71 261-347 215-297 (335)
43 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 78.7 2.7 5.9E-05 39.5 4.2 83 252-343 99-194 (195)
44 PLN02299 1-aminocyclopropane-1 78.5 6.4 0.00014 39.7 7.0 80 253-347 162-257 (321)
45 PLN02393 leucoanthocyanidin di 75.7 9.8 0.00021 38.9 7.5 80 253-347 217-312 (362)
46 PLN02403 aminocyclopropanecarb 75.1 11 0.00023 37.9 7.4 81 253-348 157-254 (303)
47 PLN02639 oxidoreductase, 2OG-F 75.1 9.9 0.00021 38.4 7.3 80 253-347 194-289 (337)
48 PLN02997 flavonol synthase 73.1 12 0.00026 37.8 7.4 80 253-348 187-282 (325)
49 PLN02758 oxidoreductase, 2OG-F 73.0 11 0.00024 38.6 7.2 81 253-347 215-311 (361)
50 KOG3200 Uncharacterized conser 72.1 6.5 0.00014 37.5 4.7 104 164-280 10-120 (224)
51 TIGR00568 alkb DNA alkylation 71.3 11 0.00023 35.0 6.0 65 250-328 96-168 (169)
52 PF05118 Asp_Arg_Hydrox: Aspar 70.5 11 0.00024 34.2 5.9 76 249-342 80-157 (163)
53 KOG0143 Iron/ascorbate family 68.3 12 0.00026 38.0 6.1 81 253-347 180-276 (322)
54 PLN03002 oxidoreductase, 2OG-F 66.7 15 0.00034 37.0 6.5 83 253-347 186-285 (332)
55 KOG4459 Membrane-associated pr 65.9 4.1 9E-05 43.4 2.3 96 274-391 369-466 (471)
56 COG5285 Protein involved in bi 63.7 33 0.00072 34.9 8.1 99 249-347 114-233 (299)
57 PHA02866 Hypothetical protein; 60.5 85 0.0018 32.3 10.3 78 246-341 79-164 (333)
58 PHA02923 hypothetical protein; 60.4 23 0.00051 36.1 6.3 77 247-342 66-142 (315)
59 PF10637 Ofd1_CTDD: Oxoglutara 49.1 41 0.00089 33.6 6.0 127 166-292 31-189 (266)
60 KOG3636 Uncharacterized conser 43.9 6.8 0.00015 42.1 -0.3 79 64-146 107-194 (669)
61 KOG3889 Predicted gamma-butyro 43.6 34 0.00073 35.0 4.4 80 208-292 136-223 (371)
62 TIGR02409 carnitine_bodg gamma 41.8 56 0.0012 33.3 5.8 75 208-292 134-221 (366)
63 KOG3425 Uncharacterized conser 41.6 9.2 0.0002 34.3 0.1 30 331-368 21-50 (128)
64 PRK13916 plasmid segregation p 40.5 12 0.00026 31.7 0.7 33 69-109 18-50 (97)
65 TIGR02410 carnitine_TMLD trime 37.8 70 0.0015 32.7 5.8 75 208-292 126-213 (362)
66 cd00250 CAS_like Clavaminic ac 37.7 54 0.0012 31.3 4.8 32 261-292 93-130 (262)
67 PF11265 Med25_VWA: Mediator c 36.2 48 0.001 32.5 4.1 71 217-289 25-107 (226)
68 KOG3959 2-Oxoglutarate- and ir 32.4 62 0.0013 32.4 4.2 102 155-271 61-174 (306)
69 PF02668 TauD: Taurine catabol 29.0 36 0.00079 31.5 2.0 32 262-293 95-132 (258)
70 cd02967 mauD Methylamine utili 26.4 29 0.00062 28.2 0.7 12 361-372 31-42 (114)
71 cd03012 TlpA_like_DipZ_like Tl 26.3 23 0.00049 29.9 0.1 11 360-370 32-42 (126)
72 PRK13264 3-hydroxyanthranilate 25.9 5.8E+02 0.013 24.2 10.1 125 216-372 7-132 (177)
73 TIGR00412 redox_disulf_2 small 25.8 25 0.00055 27.6 0.3 12 359-370 6-17 (76)
74 TIGR00411 redox_disulf_1 small 24.7 51 0.0011 25.0 1.8 13 360-372 8-20 (82)
75 PF08534 Redoxin: Redoxin; In 24.5 56 0.0012 27.8 2.2 24 333-371 26-49 (146)
76 PF02311 AraC_binding: AraC-li 24.0 1.8E+02 0.004 23.3 5.1 33 311-343 43-76 (136)
77 PF13905 Thioredoxin_8: Thiore 23.9 30 0.00065 27.2 0.4 12 359-370 9-20 (95)
78 cd02956 ybbN ybbN protein fami 22.7 39 0.00085 26.6 0.8 13 360-372 21-33 (96)
79 TIGR02738 TrbB type-F conjugat 21.7 36 0.00077 30.9 0.4 12 361-372 60-71 (153)
80 COG0526 TrxA Thiol-disulfide i 21.4 35 0.00076 25.6 0.3 11 359-369 40-50 (127)
81 cd03000 PDI_a_TMX3 PDIa family 21.3 38 0.00082 27.5 0.5 13 360-372 24-36 (104)
82 cd03008 TryX_like_RdCVF Trypar 21.2 37 0.0008 30.7 0.4 11 361-371 35-45 (146)
83 PRK09943 DNA-binding transcrip 20.8 3.5E+02 0.0075 24.6 6.7 62 251-333 109-170 (185)
84 cd02993 PDI_a_APS_reductase PD 20.5 44 0.00096 27.5 0.7 13 360-372 30-42 (109)
85 TIGR03404 bicupin_oxalic bicup 20.3 3.5E+02 0.0077 28.0 7.4 73 251-340 69-141 (367)
86 PF04378 RsmJ: Ribosomal RNA s 20.2 1.6E+02 0.0034 29.1 4.6 59 168-227 161-226 (245)
87 PRK09553 tauD taurine dioxygen 20.1 2E+02 0.0043 28.1 5.2 28 265-292 95-128 (277)
88 cd03010 TlpA_like_DsbE TlpA-li 20.1 48 0.001 27.7 0.8 12 361-372 35-46 (127)
No 1
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-63 Score=498.60 Aligned_cols=343 Identities=38% Similarity=0.546 Sum_probs=333.2
Q ss_pred ccccccccCCCCCCCCCCCCCccccCChhHHHHhhhcCCCccCCCCHHHHHHHHHHHHHHhCCcchhhhhhccHHHhhhH
Q 016060 42 SQNQRLRLNPSKDHKPESYDDMQLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKI 121 (396)
Q Consensus 42 ~~~~r~~~~~~~~~~~~~~~d~~~~~~~~~~~~~e~~lp~~~~~~~~~~k~~~~~~il~~~~~~~~r~r~~~~~e~~~~I 121 (396)
-.+.++...||.+|.+++|+|++|+|+++..++||.|+||.+|++.++.|+|||.|+|.+|+|..++.++..+..|+++|
T Consensus 29 ~ni~ld~~~~~fq~l~g~~~dv~Lkf~~~~~~~ln~~~pt~~l~~~~n~~~K~~~d~l~nY~~r~~~~~~l~~~~~r~~~ 108 (415)
T KOG1971|consen 29 LNITLDHRSRIFQNLNGAYEDVVLKFSSGQVRALNVAYPTLPLTVHGNGPAKFMLDYLGNYIPREWTGCSLCCKNYRELI 108 (415)
T ss_pred hcccccCcCcccccCcCCcCCeeEecccCchhhhhhcCCCcceeeccCccHHHHHHHHhhhcchhhhhhhccccccchhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCccccccCcccccCchhHHHhhhccHhhhhhhccccCCcEEEecCCCHHHHHHHHHHHHhhhhhhhccccccc
Q 016060 122 ITNYQPLHRELYNLHIGNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRIM 201 (396)
Q Consensus 122 ~~~Y~plhpdly~lnpe~~l~P~f~~ai~~~~~~~l~~i~~ep~P~Vy~fpvfspefC~~LIeE~E~f~~ws~gs~~~i~ 201 (396)
.++||+|+-+.|.++|+.++.|+|..+...++++.|+++..|+.|++|+||||++.||++++.++|+|+.|+.++++.|+
T Consensus 109 ~s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e~~p~~~v~~~~~~~~~ea~~~evE~~r~~~~dad~~i~ 188 (415)
T KOG1971|consen 109 KSNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSEYSPGKFVFPMFQPDFSEARLMEVEHFRKFSVDADFVIT 188 (415)
T ss_pred hhccccchhccCCCCHHHhccccccccchhccHHHHHHhccccCCeeEEeeccCccHHHHHHHHHHHhhhcccccceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccccccc--ChHHHHHHHHHHHhhhhhh---------------------hhcccccCCCCcccceeEEEEeC
Q 016060 202 RPNTMNKYGAVLDDF--GLETMLDKLMETYIRPLSK---------------------VFFAEVGGSTLDSHHGFVVEYGK 258 (396)
Q Consensus 202 rPn~mN~ygvvLddi--Gl~~~~~~Ll~~yl~Pl~~---------------------~LfPe~~g~~Ldsh~~FVVrY~~ 258 (396)
|||+|++|+++++++ +|+.+..+|.++|+.||++ .+||.+++..||+|++|++.|..
T Consensus 189 ~P~~~~~li~~~k~~ia~l~~~~~kL~enF~~al~~~~yyars~dy~~~v~g~~vg~~~~P~v~~~yl~~~~~f~~e~~~ 268 (415)
T KOG1971|consen 189 RPNTLRNLIVLNKEFIAPLVSRHGKLWENFWGALSADGYYARSEDYVDIVQGNRVGVWNVPYVCGAYLDSHDAFRVESSE 268 (415)
T ss_pred CChhHHHHHHHhhhccchhhhhhHHHHHHhhhhhccccchhhhhhhhhhhcccceeEEeecccceeEEecccceeeeccC
Confidence 999999999999999 9999999999999999999 99999999999999999999966
Q ss_pred C-CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCCcCCccCCccc-
Q 016060 259 D-RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGH- 336 (396)
Q Consensus 259 ~-~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGrh~HeglpVTsG~- 336 (396)
+ .|+++++|+|++++|+|+||++.|+||+++|.+..|+.|.++ .+..|+|+++|.+|+++||+|+|.|++.++++|+
T Consensus 269 ~~~Dpdm~~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~-~~~~EiFdn~h~p~qa~LHrg~~~~~a~~~~~~~~ 347 (415)
T KOG1971|consen 269 DNRDPDMGFCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRT-DDLWEIFDNSHDPGQAYLHRGYHKHGARATIVGQP 347 (415)
T ss_pred cCCCCccccccchhhcceeEEecccccCCeeEeeccccccccCC-CchhhhccCcCCCccceecCcchhccccccCCCCC
Confidence 5 999999999999999999999999999999999999999876 6788999999999999999999999999999999
Q ss_pred eeEEEeechhhHHHHHHhhhhccccchhhhhhhHHHHHHHhHHhhhhcc
Q 016060 337 RVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKERQRLSIAATKSVK 385 (396)
Q Consensus 337 RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~~~~~~~~~a~~~~~ 385 (396)
|-+++.||.++.||+|.+|+.+|+.||+.|+..+++++.++..+|+.+.
T Consensus 348 ~~nv~~~~~~~~c~el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~ 396 (415)
T KOG1971|consen 348 CPNVYWFPISSLCDELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIH 396 (415)
T ss_pred CCceeeehhHHHHHHHHHHHHHhhcccccchhhhhhcCCcccCCchhhH
Confidence 9999999999999999999999999999999999999999999998864
No 2
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.83 E-value=5.8e-20 Score=174.97 Aligned_cols=159 Identities=23% Similarity=0.379 Sum_probs=115.1
Q ss_pred EEEe-cCCCHHHHHHHHHHHHhhhhhhhccc-ccccccCCCCcccccccccChHH-HHHHHHHHHhh--hhhhhhccccc
Q 016060 168 VFTF-EMLQPRFCELLLAEVENFEKWVNEAK-FRIMRPNTMNKYGAVLDDFGLET-MLDKLMETYIR--PLSKVFFAEVG 242 (396)
Q Consensus 168 Vy~f-pvfspefC~~LIeE~E~f~~ws~gs~-~~i~rPn~mN~ygvvLddiGl~~-~~~~Ll~~yl~--Pl~~~LfPe~~ 242 (396)
++.+ .|||+++|+++|+.+|.- .|..|.. .....+...||..+..++. +.. +++.++ ..+. |+ |.
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~-~~~dg~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~-~~L~~~~l----~~--- 71 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAA-EWVDGRVTAGAQAAQVKNNQQLPEDSP-LARELGNLIL-DALTRNPL----FF--- 71 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhc-CCccCCcCcCccchhcccccccCCCCH-HHHHHHHHHH-HHHhcCch----hh---
Confidence 4556 499999999999999984 4653332 1222345677877777766 653 444444 4443 32 21
Q ss_pred CCCCc--ccceeEEEEeCCCCCCCcccccCC-------------ceeEEEecc--ccccCcceEEccccccccccCCCCc
Q 016060 243 GSTLD--SHHGFVVEYGKDRDVDLGFHVDDS-------------EVTLNVCLG--KQFTGGELFFRGTRCEKHVNTGSQT 305 (396)
Q Consensus 243 g~~Ld--sh~~FVVrY~~~~d~~L~~H~D~S-------------evTLNI~Ln--~dFeGGgl~F~g~~c~~hv~~~~~~ 305 (396)
...+. .+...+.||.+++ ++++|+|++ .+|++|+|| ++|+||+|.|......
T Consensus 72 sa~lp~~i~~~~f~rY~~G~--~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~g~--------- 140 (226)
T PRK05467 72 SAALPRKIHPPLFNRYEGGM--SYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTYGE--------- 140 (226)
T ss_pred hhccccccccceEEEECCCC--ccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCCCc---------
Confidence 11121 1233469999876 999999974 589999998 5799999999864321
Q ss_pred cceeeecCCCceEEEecCCCCcCCccCCccceeEEEeechhhHHHH
Q 016060 306 EEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFRE 351 (396)
Q Consensus 306 ~e~~~y~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss~~R~ 351 (396)
..+++++|.+|+|++..+|+|.|||+|+||+++.|++|. +|+
T Consensus 141 ---~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~~~Wi~S~-v~~ 182 (226)
T PRK05467 141 ---HRVKLPAGDLVLYPSTSLHRVTPVTRGVRVASFFWIQSL-VRD 182 (226)
T ss_pred ---EEEecCCCeEEEECCCCceeeeeccCccEEEEEecHHHH-cCC
Confidence 346899999999999999999999999999999999987 454
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.80 E-value=4.9e-19 Score=159.12 Aligned_cols=162 Identities=25% Similarity=0.373 Sum_probs=108.7
Q ss_pred CcEEEec-CCCHHHHHHHHHHHHhhhhhhhccccccccc----CCCCcccccccccChHHHHHHHHHHHhhhhhhhhccc
Q 016060 166 PGVFTFE-MLQPRFCELLLAEVENFEKWVNEAKFRIMRP----NTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAE 240 (396)
Q Consensus 166 P~Vy~fp-vfspefC~~LIeE~E~f~~ws~gs~~~i~rP----n~mN~ygvvLddiGl~~~~~~Ll~~yl~Pl~~~LfPe 240 (396)
|+||.++ +|++++|+.||++++.... ........+.+ ..++.....+++-.-+.+.+.+. +.+..+ ++.
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~-~~i~~~----~~~ 74 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIR-QRLADF----LGL 74 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEeecceecCCCCCCHHHHHHH-HHHHHH----HCC
Confidence 7899996 9999999999999998653 21111111111 11222233333321112222222 223222 221
Q ss_pred ccCCCCcccceeEEEEeCCCCCCCcccccCC--------ceeEEEeccccccCcceEEccccccccccCCCCccceeeec
Q 016060 241 VGGSTLDSHHGFVVEYGKDRDVDLGFHVDDS--------EVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYS 312 (396)
Q Consensus 241 ~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S--------evTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~ 312 (396)
..+.........+++|.+++ ++.+|+|.+ .+|++|+||++++||+|.|....+. ....+.
T Consensus 75 ~~~~~~~~~~~~~~~Y~~g~--~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~~~----------~~~~v~ 142 (178)
T smart00702 75 LRGLPLSAEDAQVARYGPGG--HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLGLM----------VCATVK 142 (178)
T ss_pred CchhhccCcceEEEEECCCC--cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCCCc----------cceEEe
Confidence 11111234456789999865 999999965 6999999999999999999987541 124568
Q ss_pred CCCceEEEecC---CCCcCCccCCccceeEEEeech
Q 016060 313 HVPGRAVLHRG---RHRHGARATTSGHRVNLLLWCR 345 (396)
Q Consensus 313 ~~~G~AlLHpG---rh~HeglpVTsG~RynLV~W~r 345 (396)
|.+|.+|+|+. +++|++.||++|+||++++|++
T Consensus 143 P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 143 PKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEEC
Confidence 99999999997 5999999999999999999986
No 4
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.52 E-value=7.2e-14 Score=138.83 Aligned_cols=175 Identities=18% Similarity=0.296 Sum_probs=111.1
Q ss_pred CCcEEEec-CCCHHHHHHHHHHHHh-hhhh-h-hc-ccccccccCCCCcccccccccChHHHHHHHHHHHhhhhhhhhcc
Q 016060 165 SPGVFTFE-MLQPRFCELLLAEVEN-FEKW-V-NE-AKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFA 239 (396)
Q Consensus 165 ~P~Vy~fp-vfspefC~~LIeE~E~-f~~w-s-~g-s~~~i~rPn~mN~ygvvLddiGl~~~~~~Ll~~yl~Pl~~~LfP 239 (396)
.|.||.++ |||+++|+.||+..+. +..+ + .+ ++.... .+.+..+++.+++-. +.....+. +.|+-++ ..|
T Consensus 53 ~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~-s~~RTS~~~~l~~~~-dpvv~~I~-~Ria~~t--~lp 127 (310)
T PLN00052 53 QPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVM-SEVRTSSGMFLDKRQ-DPVVSRIE-ERIAAWT--FLP 127 (310)
T ss_pred CCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCcccc-CCCEEecceeecCCC-CHHHHHHH-HHHHHHh--CCC
Confidence 69999995 9999999999999875 2221 0 00 010000 122334555554322 23333332 2333322 112
Q ss_pred cccCCCCcccceeEEEEeCCCCCCCcccccC------------CceeEEEeccccccCcceEEccccccccccCC----C
Q 016060 240 EVGGSTLDSHHGFVVEYGKDRDVDLGFHVDD------------SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTG----S 303 (396)
Q Consensus 240 e~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~------------SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~----~ 303 (396)
.- ..-..-|++|++++ .+.+|+|- ...|+.++||+..+||+|.|............ .
T Consensus 128 ~~-----~~E~lQVlrY~~Gq--~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~ 200 (310)
T PLN00052 128 EE-----NAENIQILRYEHGQ--KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSE 200 (310)
T ss_pred cc-----cCcceEEEecCCCC--CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCcccccccccccchhh
Confidence 11 11123489999987 89999992 24899999999999999999975210000000 0
Q ss_pred CccceeeecCCCceEEEecCC---------CCcCCccCCccceeEEEeechhhHHHH
Q 016060 304 QTEEIFDYSHVPGRAVLHRGR---------HRHGARATTSGHRVNLLLWCRSSVFRE 351 (396)
Q Consensus 304 ~~~e~~~y~~~~G~AlLHpGr---------h~HeglpVTsG~RynLV~W~rss~~R~ 351 (396)
-.+.-+.+.|++|.||+|..- -+|+|.||++|++|++..|++...|..
T Consensus 201 c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~~ 257 (310)
T PLN00052 201 CAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYEH 257 (310)
T ss_pred hhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccccC
Confidence 001135689999999999984 599999999999999999999877754
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.31 E-value=9.4e-12 Score=124.85 Aligned_cols=154 Identities=14% Similarity=0.240 Sum_probs=107.3
Q ss_pred CcEEEecCCCHHHHH----HHHHHHHhhh--hhhhcccc------cccccCCCCcccccccccChHHHHHHHHHHHhhhh
Q 016060 166 PGVFTFEMLQPRFCE----LLLAEVENFE--KWVNEAKF------RIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPL 233 (396)
Q Consensus 166 P~Vy~fpvfspefC~----~LIeE~E~f~--~ws~gs~~------~i~rPn~mN~ygvvLddiGl~~~~~~Ll~~yl~Pl 233 (396)
.++.+.-+|+...-. .|+.+++ +. .|....-+ ..+.++.+|+-.|++++. +.+|+.+.. +|.+-
T Consensus 5 ~~~l~~~~F~~~~f~~~k~~l~~~i~-~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~--~~L~erIr~-~Lp~~ 80 (354)
T PHA02813 5 DGIIKVKTFNDDYFNNVKKIIMDMIK-YKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL--DDIFKVIRK-KLLLS 80 (354)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHHh-ccccCccccceeccccCceEEccccccceEEEEcCH--HHHHHHHHH-hhHHH
Confidence 467778888888433 3444444 11 24321111 245567789999999988 778877654 33221
Q ss_pred hhhhcccccCCCCcccceeEEEEeCCCCCCCcccccC--------CceeEEEeccccccCcceEEccccccccccCCCCc
Q 016060 234 SKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDD--------SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQT 305 (396)
Q Consensus 234 ~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~ 305 (396)
.. -++-+...+++.+.+| +||.+|+ .|.+|.|. |.+||.++||+.++||+|.|.-....
T Consensus 81 l~-~~~lv~~V~vnerirf-yrY~kGq--~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~~~t--------- 147 (354)
T PHA02813 81 FE-FPQKISDIILDNTITL-IKYEKGD--FFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIKDNT--------- 147 (354)
T ss_pred hc-CCccceeEEEcceEEE-EEECCCc--ccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcCCCc---------
Confidence 10 0111112456788776 9999987 89999884 56899999999999999999954221
Q ss_pred cceeeecCCCceEEEecCCCCcCCccCCccceeEEEe
Q 016060 306 EEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLL 342 (396)
Q Consensus 306 ~e~~~y~~~~G~AlLHpGrh~HeglpVTsG~RynLV~ 342 (396)
+..+|.+|||.++..|+|.+|++|++|+|++
T Consensus 148 ------sI~~g~dlLFdh~l~Heg~~V~sG~KyVa~~ 178 (354)
T PHA02813 148 ------IFSTKNDVLFDKTLNHSSDIITDGEKNIALI 178 (354)
T ss_pred ------eEeecceEEEecccccCCcEeccCeEEEEEE
Confidence 1238999999999999999999999999975
No 6
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.11 E-value=6.6e-10 Score=103.82 Aligned_cols=164 Identities=21% Similarity=0.331 Sum_probs=103.2
Q ss_pred cEEEec-CCCHHHHHHHHHHHHhhhhhhhcccc-cccccCCCCcccccccccChHHHHHHHHHHHhhhhhhhhccc-ccC
Q 016060 167 GVFTFE-MLQPRFCELLLAEVENFEKWVNEAKF-RIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAE-VGG 243 (396)
Q Consensus 167 ~Vy~fp-vfspefC~~LIeE~E~f~~ws~gs~~-~i~rPn~mN~ygvvLddiGl~~~~~~Ll~~yl~Pl~~~LfPe-~~g 243 (396)
..+-+| ||++..|.++-+.++.- .|+.|.-. ...-+...||-.+.-+. .++..+..++-+-+.-. .++|.- ...
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A-~w~dGrat~g~q~a~vk~n~qlp~~s-~l~~~vg~~il~al~~~-plff~aALp~ 79 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQA-EWVDGRATQGPQGAQVKNNLQLPQDS-ALARELGNEILQALTAH-PLFFAAALPR 79 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhc-cccccccccCcchhhhhccccCCccc-HHHHHHHHHHHHHHHhc-hhHHHhhccc
Confidence 455665 99999999988888764 56654432 11223334443333332 22222222221111110 012210 011
Q ss_pred CCCcccceeEEEEeCCCCCCCcccccCC--------------ceeEEEecc--ccccCcceEEccccccccccCCCCccc
Q 016060 244 STLDSHHGFVVEYGKDRDVDLGFHVDDS--------------EVTLNVCLG--KQFTGGELFFRGTRCEKHVNTGSQTEE 307 (396)
Q Consensus 244 ~~Ldsh~~FVVrY~~~~d~~L~~H~D~S--------------evTLNI~Ln--~dFeGGgl~F~g~~c~~hv~~~~~~~e 307 (396)
..+-.. +-+|..+. .|++|+|+. .++.|..|+ +||+||+|...+....
T Consensus 80 t~~~P~---Fn~Y~eg~--~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtYg~----------- 143 (229)
T COG3128 80 TCLPPL---FNRYQEGD--FFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTYGN----------- 143 (229)
T ss_pred ccCCch---hhhccCCC--cccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccccc-----------
Confidence 111111 36787766 899999953 366777776 5999999999987653
Q ss_pred eeeecCCCceEEEecCCCCcCCccCCccceeEEEeechhhHHHH
Q 016060 308 IFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFRE 351 (396)
Q Consensus 308 ~~~y~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss~~R~ 351 (396)
..++.+.|..|++|+.-+|++.|||.|.|+..+.|.+|. +|+
T Consensus 144 -h~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~qsl-ir~ 185 (229)
T COG3128 144 -HRVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWIQSL-IRD 185 (229)
T ss_pred -eEEeccCCCEEEcccccceeccccccCceEEEeeehHHH-hhh
Confidence 345788899999999999999999999999999999976 676
No 7
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.1e-11 Score=122.29 Aligned_cols=113 Identities=19% Similarity=0.424 Sum_probs=90.2
Q ss_pred hhccHHHhhhHHh-cCC--CCCc-ccccc--Cc----ccccCchhHHHhhhccHhhhhhhccccCCcEEEecCCCHHHHH
Q 016060 111 VQRHRDYRQKIIT-NYQ--PLHR-ELYNL--HI----GNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCE 180 (396)
Q Consensus 111 ~~~~~e~~~~I~~-~Y~--plhp-dly~l--np----e~~l~P~f~~ai~~~~~~~l~~i~~ep~P~Vy~fpvfspefC~ 180 (396)
+.++.++|+++.. .|+ ++++ ++|+| |+ +.|||+.|.++.+.+ .++.++||+|||||++ .+|+
T Consensus 290 l~nq~~gG~L~~~~~~~~~h~~~~~~~EiFdn~h~p~qa~LHrg~~~~~a~~------~~~~~~~~nv~~~~~~--~~c~ 361 (415)
T KOG1971|consen 290 LSNQFEGGELLFTGKYCTKHLRTDDLWEIFDNSHDPGQAYLHRGYHKHGARA------TIVGQPCPNVYWFPIS--SLCD 361 (415)
T ss_pred ecccccCCeeEeeccccccccCCCchhhhccCcCCCccceecCcchhccccc------cCCCCCCCceeeehhH--HHHH
Confidence 6788999999877 787 6677 89988 33 899999999998875 5789999999999999 9999
Q ss_pred HHHHHHHhhhhhhhcccccccccCC---CCcccccccccChHHHHHHHHHHHhh
Q 016060 181 LLLAEVENFEKWVNEAKFRIMRPNT---MNKYGAVLDDFGLETMLDKLMETYIR 231 (396)
Q Consensus 181 ~LIeE~E~f~~ws~gs~~~i~rPn~---mN~ygvvLddiGl~~~~~~Ll~~yl~ 231 (396)
+|++++++|++|++|.+...+.-.+ --+..+.+.++|++..|.+++..|++
T Consensus 362 el~~~me~f~~Ws~g~~~D~r~~~gye~~~trdi~m~q~~~e~~~~~~~~~~~~ 415 (415)
T KOG1971|consen 362 ELVEEMEEFGRWSGGCAEDKRLAGGYENVPTRDIHMRQVGFERLWLKFLRTYVR 415 (415)
T ss_pred HHHHHHHHhhcccccchhhhhhcCCcccCCchhhHHHhhhhHHHHHHHHHHhhC
Confidence 9999999999999988765322111 11122336669999999999998873
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=98.99 E-value=4.2e-10 Score=91.94 Aligned_cols=83 Identities=29% Similarity=0.510 Sum_probs=62.6
Q ss_pred EEEEeCCCCCCCcccccC-----CceeEEEeccc-c--ccCcceEEccccccccccCCCCccceeeec-----CCCceEE
Q 016060 253 VVEYGKDRDVDLGFHVDD-----SEVTLNVCLGK-Q--FTGGELFFRGTRCEKHVNTGSQTEEIFDYS-----HVPGRAV 319 (396)
Q Consensus 253 VVrY~~~~d~~L~~H~D~-----SevTLNI~Ln~-d--FeGGgl~F~g~~c~~hv~~~~~~~e~~~y~-----~~~G~Al 319 (396)
+.+|.++. .+.+|.|. ..+|+.++||+ + ++||+|.|.... .. ......+. |.+|.+|
T Consensus 3 ~~~y~~G~--~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~-------~~~~~~~~~~~~~p~~g~~v 72 (100)
T PF13640_consen 3 LNRYPPGG--FFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DS-------DDVSREVEDFDIVPKPGRLV 72 (100)
T ss_dssp EEEEETTE--EEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS--T-------SSTCEEEGGGSEE-BTTEEE
T ss_pred EEEECcCC--EEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccc-cC-------CCcceEEEeccccCCCCEEE
Confidence 56787755 99999999 35999999984 4 799999999753 10 00111223 9999999
Q ss_pred EecC-CCCcCCccC-CccceeEEEeech
Q 016060 320 LHRG-RHRHGARAT-TSGHRVNLLLWCR 345 (396)
Q Consensus 320 LHpG-rh~HeglpV-TsG~RynLV~W~r 345 (396)
+|++ ..+|++.|| ..|+|++++.|.+
T Consensus 73 ~F~~~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 73 IFPSDNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EEESCTCEEEEEEE-EESEEEEEEEEEE
T ss_pred EEeCCCCeecCcccCCCCCEEEEEEEEC
Confidence 9999 899999999 9999999999974
No 9
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=98.97 E-value=2.7e-09 Score=108.91 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=69.8
Q ss_pred CCCCcccceeEEEEeCCCCCCCcccccC--------CceeEEEeccccccCcceEEccccccccccCCCCccceeeecCC
Q 016060 243 GSTLDSHHGFVVEYGKDRDVDLGFHVDD--------SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHV 314 (396)
Q Consensus 243 g~~Ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~ 314 (396)
..+++.+.+| +||.+|+ .|.+|.|. |.+||.|+||+.++||+|.|.-..+ ..+.|+
T Consensus 98 ~V~lnerirf-yrY~kGq--~F~~H~Dg~~~rs~e~s~~tLLLYLNd~~~GGET~f~~~~~-------------~sI~pk 161 (418)
T PHA02869 98 SVTVENTVTL-IMYEKGD--YFARHRDFSTVFSKNIICVHLLLYLEQPETGGETVIYIDNN-------------TSVKLK 161 (418)
T ss_pred eEEEcceEEE-EEECCCC--cccccccCceecCCCEEEEEEEEEEeccCCCCceEEEeCCC-------------ceEecC
Confidence 3467888776 9999987 99999996 5699999999999999999996221 235789
Q ss_pred CceEEEecCCCCcCCccCCccceeEEEe
Q 016060 315 PGRAVLHRGRHRHGARATTSGHRVNLLL 342 (396)
Q Consensus 315 ~G~AlLHpGrh~HeglpVTsG~RynLV~ 342 (396)
+| |||.++..|+|.+|++|++|+|..
T Consensus 162 sg--LLFdh~l~Heg~~V~sG~KyVart 187 (418)
T PHA02869 162 TD--HLFDKTIEHESITVESGRKCVALF 187 (418)
T ss_pred CC--eEeccccccCCcEeecCeEEEEEE
Confidence 99 999999999999999999999853
No 10
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.36 E-value=4.4e-07 Score=73.99 Aligned_cols=79 Identities=25% Similarity=0.303 Sum_probs=58.0
Q ss_pred eeEEEEe-CCCCCCCcccccC--CceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC---
Q 016060 251 GFVVEYG-KDRDVDLGFHVDD--SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR--- 324 (396)
Q Consensus 251 ~FVVrY~-~~~d~~L~~H~D~--SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr--- 324 (396)
..+.+|. ++.+..+++|+|. +.+|++++ .++|||.|....+ ...+.+.++..++..|.
T Consensus 4 ~~~~~Y~~~~~~~~~~~H~D~~~~~~Til~~----~~~~gL~~~~~~~------------~~~v~~~~~~~~v~~G~~l~ 67 (98)
T PF03171_consen 4 LRLNRYPPPENGVGIGPHTDDEDGLLTILFQ----DEVGGLQVRDDGE------------WVDVPPPPGGFIVNFGDALE 67 (98)
T ss_dssp EEEEEE-SCCGCEEEEEEEES--SSEEEEEE----TSTS-EEEEETTE------------EEE----TTCEEEEEBHHHH
T ss_pred EEEEECCCcccCCceeCCCcCCCCeEEEEec----ccchheecccccc------------ccCccCccceeeeeceeeee
Confidence 4578999 6678899999999 99999998 7899999997542 23456777888888887
Q ss_pred ---------CCcCCccCCccceeEEEeech
Q 016060 325 ---------HRHGARATTSGHRVNLLLWCR 345 (396)
Q Consensus 325 ---------h~HeglpVTsG~RynLV~W~r 345 (396)
.+|++.+++.|.||+++.|++
T Consensus 68 ~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 68 ILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp HHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred cccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 899999999999999999986
No 11
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=98.13 E-value=1.6e-05 Score=78.90 Aligned_cols=160 Identities=21% Similarity=0.255 Sum_probs=99.0
Q ss_pred CCcEEEec-CCCHHHHHHHHHHHHh-hhhhhh-ccccccccc-C-CCCcccccccccChHHHHHHHHHHHhhhhhhhhcc
Q 016060 165 SPGVFTFE-MLQPRFCELLLAEVEN-FEKWVN-EAKFRIMRP-N-TMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFA 239 (396)
Q Consensus 165 ~P~Vy~fp-vfspefC~~LIeE~E~-f~~ws~-gs~~~i~rP-n-~mN~ygvvLddiGl~~~~~~Ll~~yl~Pl~~~LfP 239 (396)
.|.|+.|+ |+++++|+.||+..+. ...+.- ..+....-. . .+.--|.-+.+ +-.... ..+++.|.-++. +|
T Consensus 96 ~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~-~~~~~~-~~i~~ri~~~T~--l~ 171 (289)
T KOG1591|consen 96 DPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPD-GASPVV-SRIEQRIADLTG--LP 171 (289)
T ss_pred CCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecC-CCCHHH-HHHHHHHHhccC--CC
Confidence 48899995 9999999999998663 333211 001000000 0 01111223333 222211 222233332221 11
Q ss_pred cccCCCCcccceeEEEEeCCCCCCCcccccCCc----------------eeEEEeccccccCcceEEccccccccccCCC
Q 016060 240 EVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSE----------------VTLNVCLGKQFTGGELFFRGTRCEKHVNTGS 303 (396)
Q Consensus 240 e~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se----------------vTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~ 303 (396)
--.+-. --|++|+.|+ ++.+|+|-.. -|+.++|++.=+||+|.|....-.
T Consensus 172 ~e~~E~-----lqVlnYg~Gg--~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~~------- 237 (289)
T KOG1591|consen 172 VENGES-----LQVLNYGLGG--HYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGMK------- 237 (289)
T ss_pred cccCcc-----ceEEEecCCc--cccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCCc-------
Confidence 111111 2289999877 9999988431 388899999999999999987531
Q ss_pred CccceeeecCCCceEEEecC---------CCCcCCccCCccceeEEEeechhh
Q 016060 304 QTEEIFDYSHVPGRAVLHRG---------RHRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 304 ~~~e~~~y~~~~G~AlLHpG---------rh~HeglpVTsG~RynLV~W~rss 347 (396)
..+.|++|.|+++-- +-.|+|.||..|.||+...|+|-.
T Consensus 238 -----~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~ 285 (289)
T KOG1591|consen 238 -----PAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEK 285 (289)
T ss_pred -----ccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeec
Confidence 235799999998642 278999999999999999999854
No 12
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.20 E-value=0.0061 Score=53.77 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=80.1
Q ss_pred cEEEe-cCCCHHHHHHHHHHHHhh--hhhhhcccccccccCC-CCcccccc-cccChHHHHHHHHHH-Hhhhhhhhhccc
Q 016060 167 GVFTF-EMLQPRFCELLLAEVENF--EKWVNEAKFRIMRPNT-MNKYGAVL-DDFGLETMLDKLMET-YIRPLSKVFFAE 240 (396)
Q Consensus 167 ~Vy~f-pvfspefC~~LIeE~E~f--~~ws~gs~~~i~rPn~-mN~ygvvL-ddiGl~~~~~~Ll~~-yl~Pl~~~LfPe 240 (396)
|...+ .+|+++.|+.|.++++.. ..+..+.+........ ...+...+ ++. ..+..++.. .+..+++.++..
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~ 81 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESFFGDYTEQLAKSP---NFYDLFLHPPRILDLVRALLGS 81 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSCCCTCCCCGCCCH---HHHHHHHTHHHHHHHHHHHHTS
T ss_pred cEEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccch---hhHHHHhhHHHHHHHHHHhhCC
Confidence 45555 599999999999999986 2221111211111111 11111111 111 233344443 444555555521
Q ss_pred ccCCCCcccceeEEEEe-CCCCCC-CcccccC---------CceeEEEeccc-cccCcceEEccccccc-------cccC
Q 016060 241 VGGSTLDSHHGFVVEYG-KDRDVD-LGFHVDD---------SEVTLNVCLGK-QFTGGELFFRGTRCEK-------HVNT 301 (396)
Q Consensus 241 ~~g~~Ldsh~~FVVrY~-~~~d~~-L~~H~D~---------SevTLNI~Ln~-dFeGGgl~F~g~~c~~-------hv~~ 301 (396)
-.......+..+..-+. ++.+.. ..+|.|. ..+|+.|+|.+ .=+.|.+.+....-.. ....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~~~~~ 161 (211)
T PF05721_consen 82 DVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHTDPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEERFPE 161 (211)
T ss_dssp SEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECCCCCC
T ss_pred cchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccccCCccceEEEEEeeccCCcccCceEeecCCcCCCcccccccccc
Confidence 10000001111100122 232334 5899992 24788999975 3456667775321100 0000
Q ss_pred CC-----------CccceeeecCCCceEEEecCCCCcCCcc-CCcccee
Q 016060 302 GS-----------QTEEIFDYSHVPGRAVLHRGRHRHGARA-TTSGHRV 338 (396)
Q Consensus 302 ~~-----------~~~e~~~y~~~~G~AlLHpGrh~Heglp-VTsG~Ry 338 (396)
.. .......+..++|.+|+|.++.+|++.+ .|.+.|-
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~R~ 210 (211)
T PF05721_consen 162 EDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHSRLIHGSGPNTSDDPRR 210 (211)
T ss_dssp CCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEETTSEEEEE-B-SSSTEE
T ss_pred cccccccccccccccCceEEeecCCCeEEEEcCCccccCCCCCCcCcCC
Confidence 00 0134456778999999999999999999 5555564
No 13
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.19 E-value=0.00078 Score=62.34 Aligned_cols=82 Identities=27% Similarity=0.411 Sum_probs=60.7
Q ss_pred eEEEEeCCCCCCCcccccC-Cc----eeEEEecc---ccccCcceEEccccccccccCCCCccceeeecCCCceEEEecC
Q 016060 252 FVVEYGKDRDVDLGFHVDD-SE----VTLNVCLG---KQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRG 323 (396)
Q Consensus 252 FVVrY~~~~d~~L~~H~D~-Se----vTLNI~Ln---~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpG 323 (396)
.+.+|+++. .-..|.|- .+ +-+-|.|+ +||+|||...-..+..- . .+...+.++.|.|+||.-
T Consensus 65 lllrY~~gd--yn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR~--Q-----SR~~V~~L~qGda~if~t 135 (173)
T PF09859_consen 65 LLLRYGPGD--YNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRPRM--Q-----SRAMVLPLRQGDALIFAT 135 (173)
T ss_pred hhheeCCCC--ccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEecCCc--c-----CccccCCcCCCCEEEEec
Confidence 468898866 88888883 22 34445554 69999999998765321 1 234456899999999975
Q ss_pred C--------------CCcCCccCCccceeEEEe
Q 016060 324 R--------------HRHGARATTSGHRVNLLL 342 (396)
Q Consensus 324 r--------------h~HeglpVTsG~RynLV~ 342 (396)
+ ++|+.-+|.+|+||.|-+
T Consensus 136 ~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgl 168 (173)
T PF09859_consen 136 NHRPVRGARGYYRVNMRHGVSRVRSGERHTLGL 168 (173)
T ss_pred CCCCcCCCccceecccccccccccccceEEEEE
Confidence 4 689999999999999854
No 14
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=97.11 E-value=0.0009 Score=61.64 Aligned_cols=72 Identities=22% Similarity=0.445 Sum_probs=62.5
Q ss_pred CCCCCcccccC----CceeEEEeccc-cccCcceEEcc-----ccccccccCCCCccceeeecCCCceEEEecCC-CCcC
Q 016060 260 RDVDLGFHVDD----SEVTLNVCLGK-QFTGGELFFRG-----TRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR-HRHG 328 (396)
Q Consensus 260 ~d~~L~~H~D~----SevTLNI~Ln~-dFeGGgl~F~g-----~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr-h~He 328 (396)
.+.....|+|. ..+|+.+.|+. ||+||-+.+.+ .+.. +.+.+|..|++.|+ .+|+
T Consensus 83 ~nr~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~--------------~~~~~GtVl~~~~~~~~Hg 148 (171)
T PF12851_consen 83 SNRCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVA--------------FAYQPGTVLIFCAKRELHG 148 (171)
T ss_pred eecCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEE--------------EecCCCcEEEEcccceeee
Confidence 35578899997 67899999986 49999999998 5533 46899999999999 9999
Q ss_pred CccCCc-----cceeEEEeech
Q 016060 329 ARATTS-----GHRVNLLLWCR 345 (396)
Q Consensus 329 glpVTs-----G~RynLV~W~r 345 (396)
..||.+ |+|+-||.|.|
T Consensus 149 vtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 149 VTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred cCcccCCCCCCCeEEEEEEEeE
Confidence 999998 99999999876
No 15
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=96.75 E-value=0.033 Score=54.47 Aligned_cols=175 Identities=17% Similarity=0.242 Sum_probs=89.6
Q ss_pred CcEEEe-cCCCHHHHHHHHHHHHhhhhhh--hcccccccccCCCCcccccccccChHHHHHHHHH-HHhhhhhhhhcc-c
Q 016060 166 PGVFTF-EMLQPRFCELLLAEVENFEKWV--NEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLME-TYIRPLSKVFFA-E 240 (396)
Q Consensus 166 P~Vy~f-pvfspefC~~LIeE~E~f~~ws--~gs~~~i~rPn~mN~ygvvLddiGl~~~~~~Ll~-~yl~Pl~~~LfP-e 240 (396)
.|...+ .+|+++.|+.|.++++...... ......+..+ ..+..+.+++.......+.+|+. .-|..+++.|.. +
T Consensus 28 dGyvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~l~~~p~l~~~~~~LlG~~ 106 (277)
T TIGR02408 28 DGFLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEP-GSNAVRSIFEVHVLSPILARLVRDPRVANAARQILGSD 106 (277)
T ss_pred CCEEECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecC-CCCceEEEecccccCHHHHHHHcChHHHHHHHHHcCCC
Confidence 366666 5999999999999998764310 0000000001 11222233333333333333321 223333333331 1
Q ss_pred ccCCCCcccceeEEEEeCC-CCCCCcccccCC------------ceeEEEecccc-ccCcceEEcccccccccc-CCCC-
Q 016060 241 VGGSTLDSHHGFVVEYGKD-RDVDLGFHVDDS------------EVTLNVCLGKQ-FTGGELFFRGTRCEKHVN-TGSQ- 304 (396)
Q Consensus 241 ~~g~~Ldsh~~FVVrY~~~-~d~~L~~H~D~S------------evTLNI~Ln~d-FeGGgl~F~g~~c~~hv~-~~~~- 304 (396)
+ .+ .+..++.+ ++ .+..+.+|.|.+ .+|+-|+|.+- =+-|.|.|....-...+. ....
T Consensus 107 ~---~l-~~~~l~~k--p~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~ 180 (277)
T TIGR02408 107 V---YV-HQSRINMK--PGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETP 180 (277)
T ss_pred e---EE-Eeeeeeec--CCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCcccc
Confidence 1 11 11223333 43 345778898843 37888999763 444777776432110000 0000
Q ss_pred --------------------------ccceeeecCCCceEEEecCCCCcCCccCCccceeEEEeechhh
Q 016060 305 --------------------------TEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 305 --------------------------~~e~~~y~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss 347 (396)
......+..++|.+|+|.+..+|++.+-++..+--.+.-.+++
T Consensus 181 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~ 249 (277)
T TIGR02408 181 RDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNS 249 (277)
T ss_pred chhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEccccccCCCCCCCCCcceeEEEEEec
Confidence 0011234569999999999999999988877644444444444
No 16
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=96.73 E-value=0.037 Score=54.80 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=31.6
Q ss_pred eeeecCCCceEEEecCCCCcCCccCCcc--ceeEEEe-echhh
Q 016060 308 IFDYSHVPGRAVLHRGRHRHGARATTSG--HRVNLLL-WCRSS 347 (396)
Q Consensus 308 ~~~y~~~~G~AlLHpGrh~HeglpVTsG--~RynLV~-W~rss 347 (396)
.+....++|.+++|.+..+|++-+-++. .|..+++ |+.++
T Consensus 208 ~v~~~lkaGd~~~f~~~t~HgS~~N~S~~~~R~~~~~ry~~~~ 250 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLMHASYPNSGESQMRMGFASRYVPSF 250 (288)
T ss_pred eeeeeeCCceEEEECCCceecCCCCCCCCceEEEEEEEEcCCC
Confidence 4556779999999999999999999884 3777655 66554
No 17
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=96.28 E-value=0.0058 Score=48.09 Aligned_cols=40 Identities=38% Similarity=0.640 Sum_probs=32.3
Q ss_pred EEEEeCCCCCCCcccccCC--------ceeEEEecc----ccccCcceEEcccc
Q 016060 253 VVEYGKDRDVDLGFHVDDS--------EVTLNVCLG----KQFTGGELFFRGTR 294 (396)
Q Consensus 253 VVrY~~~~d~~L~~H~D~S--------evTLNI~Ln----~dFeGGgl~F~g~~ 294 (396)
.++|.. +..+.+|+|+. .+|+.|+|| ++|+||.++|....
T Consensus 15 ~~~~~~--g~~~~~H~D~~~~~~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 15 FYRYRR--GDFFGWHVDADPSSSGKRRFLTLLLYLNEDWDEDFGGGELFFDDDG 66 (70)
T ss_pred EEEcCC--CCEeeeeEcCCccccccceeEEEEEEecccccCccCCcEEEEeCCC
Confidence 355655 44999999964 389999999 79999999998754
No 18
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=96.05 E-value=0.17 Score=48.10 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=59.8
Q ss_pred ceeEEEEeCCCCCCCccccc-CCceeEEEeccccccCcceEEccccccccccC-----C--CCccceeeecCCCceEEEe
Q 016060 250 HGFVVEYGKDRDVDLGFHVD-DSEVTLNVCLGKQFTGGELFFRGTRCEKHVNT-----G--SQTEEIFDYSHVPGRAVLH 321 (396)
Q Consensus 250 ~~FVVrY~~~~d~~L~~H~D-~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~-----~--~~~~e~~~y~~~~G~AlLH 321 (396)
...++.+.++. .-..|.- +|-++-..+|.-.=.+|.+.|...+....+.. . ........+.|++|..|||
T Consensus 97 ~~W~ni~~~Gg--~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlF 174 (201)
T TIGR02466 97 KAWVNILPQGG--THSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLF 174 (201)
T ss_pred eEeEEEcCCCC--ccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEE
Confidence 57788888765 5555544 67899999997555688898876543211100 0 0011233578999999999
Q ss_pred cCCCCcCCccCCcc-ceeE
Q 016060 322 RGRHRHGARATTSG-HRVN 339 (396)
Q Consensus 322 pGrh~HeglpVTsG-~Ryn 339 (396)
|+.++|++.|-.+. +|..
T Consensus 175 PS~L~H~v~p~~~~~~RIS 193 (201)
T TIGR02466 175 ESWLRHEVPPNESEEERIS 193 (201)
T ss_pred CCCCceecCCCCCCCCEEE
Confidence 99999999999874 5544
No 19
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=95.82 E-value=0.13 Score=46.62 Aligned_cols=154 Identities=18% Similarity=0.306 Sum_probs=75.0
Q ss_pred cEEEec-CCCHHHHHHHHHHHHhhhhhhhccccc--ccc-cCC-C---------C--cccc--cccccChH---HHHHHH
Q 016060 167 GVFTFE-MLQPRFCELLLAEVENFEKWVNEAKFR--IMR-PNT-M---------N--KYGA--VLDDFGLE---TMLDKL 225 (396)
Q Consensus 167 ~Vy~fp-vfspefC~~LIeE~E~f~~ws~gs~~~--i~r-Pn~-m---------N--~ygv--vLddiGl~---~~~~~L 225 (396)
|+|.+| +|++++.++|++++..-..|....... ... +.. . . +|.. ..+...+. ..+..+
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~~~ 80 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLSRL 80 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHHHH
Confidence 567775 999999999999999644443221110 000 000 0 0 1221 22333332 334444
Q ss_pred HHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCCc-----eeEEEeccccccCcceEEcccccccccc
Q 016060 226 METYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSE-----VTLNVCLGKQFTGGELFFRGTRCEKHVN 300 (396)
Q Consensus 226 l~~yl~Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se-----vTLNI~Ln~dFeGGgl~F~g~~c~~hv~ 300 (396)
++....-.. ..+. ..+| ...|-.|.++. .+++|.|+.+ .-+.|+||.. ....|....
T Consensus 81 ~~~~~~~~~--~~~~---~~~n--~~liN~Y~~g~--~i~~H~D~~~~~~~~~I~slSLG~~---~~~~f~~~~------ 142 (194)
T PF13532_consen 81 LERLVEATG--IPPG---WRPN--QCLINYYRDGS--GIGPHSDDEEYGFGPPIASLSLGSS---RVFRFRNKS------ 142 (194)
T ss_dssp HHHHHHHHT---SHS---S--S--EEEEEEESSTT---EEEE---TTC-CCSEEEEEEEES----EEEEEEECG------
T ss_pred HHHHHHHhc--cccC---CCCC--EEEEEecCCCC--CcCCCCCcccccCCCcEEEEEEccC---ceEEEeecc------
Confidence 443221110 1121 2223 45567898865 9999999874 3556666421 111333211
Q ss_pred CCCCccceeeecCCCceEEEecCC---CCcCCccCCcc---------ceeEEE
Q 016060 301 TGSQTEEIFDYSHVPGRAVLHRGR---HRHGARATTSG---------HRVNLL 341 (396)
Q Consensus 301 ~~~~~~e~~~y~~~~G~AlLHpGr---h~HeglpVTsG---------~RynLV 341 (396)
..++.+.+....|..++..|. .+|+..++..+ .|.+|.
T Consensus 143 ---~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~~~~~~~RislT 192 (194)
T PF13532_consen 143 ---DDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPSHYVRGRRISLT 192 (194)
T ss_dssp ---GTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEESTEE-S-EEEEE
T ss_pred ---CCCccEEEEcCCCCEEEeChHHhhheeEcccccCCccccccCCCCEEEEE
Confidence 224667788999999999999 44999999885 587775
No 20
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.39 E-value=0.056 Score=44.92 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=45.7
Q ss_pred eEEEEeCCCCCCCcccc-cCCceeEEEeccccccCcceEEcccccccccc-------CCCCccceeeecCCCceEEEecC
Q 016060 252 FVVEYGKDRDVDLGFHV-DDSEVTLNVCLGKQFTGGELFFRGTRCEKHVN-------TGSQTEEIFDYSHVPGRAVLHRG 323 (396)
Q Consensus 252 FVVrY~~~~d~~L~~H~-D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~-------~~~~~~e~~~y~~~~G~AlLHpG 323 (396)
..+.|+++. ....|. .+|.++-..+|.-+=+.|.+.|...+...... ..........+.++.|..||||+
T Consensus 3 W~ni~~~g~--~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs 80 (101)
T PF13759_consen 3 WANIYRKGG--YNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPS 80 (101)
T ss_dssp EEEEE-TT----EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEET
T ss_pred eEEEeCCCC--ccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCC
Confidence 456676654 555554 46788999999644477888987543211000 01122445678999999999999
Q ss_pred CCCcCCccCCcc-ceeEE
Q 016060 324 RHRHGARATTSG-HRVNL 340 (396)
Q Consensus 324 rh~HeglpVTsG-~RynL 340 (396)
.+.|++.|-.+. .|+.+
T Consensus 81 ~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 81 WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TSEEEE----SSS-EEEE
T ss_pred CCEEeccCcCCCCCEEEE
Confidence 999999999986 56554
No 21
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.78 E-value=0.058 Score=51.25 Aligned_cols=83 Identities=28% Similarity=0.404 Sum_probs=59.0
Q ss_pred eeEEEEeCCCCCCCccccc---CCceeEEEe--c---cccccCcceEEccccccccccCCCCccceeeecCCCceEEEec
Q 016060 251 GFVVEYGKDRDVDLGFHVD---DSEVTLNVC--L---GKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHR 322 (396)
Q Consensus 251 ~FVVrY~~~~d~~L~~H~D---~SevTLNI~--L---n~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHp 322 (396)
....+|+++. .=..|.| +--|.|.|+ | ++||+|||...-+.+.. +. ...-.++.+.|.+++|.
T Consensus 126 pLlLqYgpgD--~NcLHQDLYGelvFPLQvailLsePg~DfTGGEF~lvEQRPR--~Q-----Sr~~vvpLrqG~g~vFa 196 (236)
T COG3826 126 PLLLQYGPGD--YNCLHQDLYGELVFPLQVAILLSEPGTDFTGGEFVLVEQRPR--MQ-----SRPTVVPLRQGDGVVFA 196 (236)
T ss_pred ceeEEecCCc--cchhhhhhhhceeeeeeEEEeccCCCCcccCceEEEEecccc--cc-----cCCceeeccCCceEEEE
Confidence 4578999976 6677888 233444443 4 47999999988776532 11 22344678999999984
Q ss_pred CC--------------CCcCCccCCccceeEEEe
Q 016060 323 GR--------------HRHGARATTSGHRVNLLL 342 (396)
Q Consensus 323 Gr--------------h~HeglpVTsG~RynLV~ 342 (396)
-+ .+||.-.+-||+|+.+-+
T Consensus 197 vr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~Gi 230 (236)
T COG3826 197 VRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGI 230 (236)
T ss_pred eecCcccCccCccccchhcchhhhhcccceeeEE
Confidence 22 799999999999998844
No 22
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=94.38 E-value=0.47 Score=45.65 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=87.5
Q ss_pred cccCCcEEEecCCCHHHHHHHHHHHHhhhh---hhhccccc---ccccCCC-----------Cccccc-c---cccChH-
Q 016060 162 SEPSPGVFTFEMLQPRFCELLLAEVENFEK---WVNEAKFR---IMRPNTM-----------NKYGAV-L---DDFGLE- 219 (396)
Q Consensus 162 ~ep~P~Vy~fpvfspefC~~LIeE~E~f~~---ws~gs~~~---i~rPn~m-----------N~ygvv-L---ddiGl~- 219 (396)
++..||++.+|=|..+.+++|+++++.... |-+ -..+ .|.+..+ +.|+-- . .-....
T Consensus 14 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~-~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~ 92 (213)
T PRK15401 14 EPLAPGAVLLRGFALAAAEALLAAIEAVAAQAPFRH-MVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPA 92 (213)
T ss_pred eecCCCcEEeCCCCHHHHHHHHHHHHHHHhcCCccc-eecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCC
Confidence 455799999998899999999999987321 211 0000 1111111 112211 1 111111
Q ss_pred --HHHHHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCCc-----eeEEEeccccccCcceEEcc
Q 016060 220 --TMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSE-----VTLNVCLGKQFTGGELFFRG 292 (396)
Q Consensus 220 --~~~~~Ll~~yl~Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se-----vTLNI~Ln~dFeGGgl~F~g 292 (396)
..+..|.++... ..++....+| -..|-.|.++. .+++|.|+.| .-++|+||. ...|.=
T Consensus 93 ~P~~l~~L~~~~~~------~~~~~~~~p~--a~LvN~Y~~G~--~mg~H~D~~E~~~~~pI~SvSLG~-----~~~F~~ 157 (213)
T PRK15401 93 MPASFLALAQRAAA------AAGFPGFQPD--ACLINRYAPGA--KLSLHQDKDERDFRAPIVSVSLGL-----PAVFQF 157 (213)
T ss_pred chHHHHHHHHHHHH------HcCCCCCCCC--EEEEEeccCcC--ccccccCCCcccCCCCEEEEeCCC-----CeEEEe
Confidence 134444432211 0111111223 46678899875 9999999644 346666653 333331
Q ss_pred ccccccccCCCCccceeeecCCCceEEEecCC---CCcCCccCCcc-------ceeEEEe
Q 016060 293 TRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---HRHGARATTSG-------HRVNLLL 342 (396)
Q Consensus 293 ~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---h~HeglpVTsG-------~RynLV~ 342 (396)
..-+ ..++...+....|..||..|. .+|+..++..| .|+||-.
T Consensus 158 ~~~~-------~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p~~g~~RINLTF 210 (213)
T PRK15401 158 GGLK-------RSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHPLTGECRINLTF 210 (213)
T ss_pred cccC-------CCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCCCCCCCeEEEEe
Confidence 0000 112245678899999999988 78999888765 5898853
No 23
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=92.82 E-value=0.22 Score=50.90 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=63.9
Q ss_pred CCcccceeEEEEeCCCCCCCcccccC--------CceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCc
Q 016060 245 TLDSHHGFVVEYGKDRDVDLGFHVDD--------SEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPG 316 (396)
Q Consensus 245 ~Ldsh~~FVVrY~~~~d~~L~~H~D~--------SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G 316 (396)
.++.+..| ++|..|. .|.-|.|. .+++|.++|+..=+||+|.|.=..+.. .+ ...+
T Consensus 76 ~V~n~iTf-ikY~kGd--~f~~~~d~~~~~~~n~~~y~LvLyL~~~~~GGktkiyi~~~~~---------tv----I~~~ 139 (339)
T PF03336_consen 76 IVDNTITF-IKYEKGD--FFDNHRDFIKRDSKNCLEYHLVLYLNNPENGGKTKIYIDPNDN---------TV----ISTS 139 (339)
T ss_pred EEcceEEE-EEEccCc--chhhhcccceeccCCceEEEEEEEEeccCCCceEEEEECCCCc---------ee----eecc
Confidence 44666666 8998866 89999874 369999999999999999988433221 11 2558
Q ss_pred eEEEecCCCCcCCccCCccceeEEE
Q 016060 317 RAVLHRGRHRHGARATTSGHRVNLL 341 (396)
Q Consensus 317 ~AlLHpGrh~HeglpVTsG~RynLV 341 (396)
.-+||.-+..|+...|++|++++++
T Consensus 140 ~DvLFdKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 140 EDVLFDKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred ccEEEeccccccceEeccCeEEEEE
Confidence 8899999999999999999999954
No 24
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=87.22 E-value=1.4 Score=43.21 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=54.3
Q ss_pred CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCC------------CcC
Q 016060 261 DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRH------------RHG 328 (396)
Q Consensus 261 d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGrh------------~He 328 (396)
+..++.|+|.+.+||... ++ .|||.... ..+.+.+.+.+|..||.-|-+ +|.
T Consensus 132 ~~g~~~HtD~g~lTlL~q--d~--v~GLqV~~------------~g~Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HR 195 (262)
T PLN03001 132 TLGLQSHSDFGAITLLIQ--DD--VEGLQLLK------------DAEWLMVPPISDAILIIIADQTEIITNGNYKSAQHR 195 (262)
T ss_pred ccCCcCCcCCCeeEEEEe--CC--CCceEEee------------CCeEEECCCCCCcEEEEccHHHHHHhCCccccccce
Confidence 456889999999999654 33 35676542 135788899999999999874 488
Q ss_pred CccCCccceeEEEeechhh
Q 016060 329 ARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 329 glpVTsG~RynLV~W~rss 347 (396)
+.......||.+..|+...
T Consensus 196 Vv~~~~~~R~Sia~F~~p~ 214 (262)
T PLN03001 196 AIANANKARLSVATFHDPA 214 (262)
T ss_pred EEcCCCCCEEEEEEEEcCC
Confidence 8765567799999999854
No 25
>PLN02276 gibberellin 20-oxidase
Probab=87.15 E-value=1.9 Score=44.01 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=59.2
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+ +....++.|+|-+.+||... | +.|||.... ..+++.+.+.+|..||.-|-
T Consensus 210 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q---d-~v~GLQV~~------------~g~Wi~V~p~pgalVVNiGD~L~~ 273 (361)
T PLN02276 210 CNYYPPCQEPELTLGTGPHCDPTSLTILHQ---D-QVGGLQVFV------------DNKWRSVRPRPGALVVNIGDTFMA 273 (361)
T ss_pred eEeCCCCCCcccccCCccccCCceeEEEEe---c-CCCceEEEE------------CCEEEEcCCCCCeEEEEcHHHHHH
Confidence 455644 23456889999999999874 2 456777652 13578899999999999975
Q ss_pred --------CCcCCccCCccceeEEEeechh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRS 346 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rs 346 (396)
.+|.+..-....||.++.|+.-
T Consensus 274 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P 303 (361)
T PLN02276 274 LSNGRYKSCLHRAVVNSERERRSLAFFLCP 303 (361)
T ss_pred HhCCccccccceeecCCCCCEEEEEEEecC
Confidence 6788876566789999999984
No 26
>PLN02904 oxidoreductase
Probab=86.76 E-value=2 Score=43.93 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=59.1
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+- ....+++|+|-+.+||... + +|||..... ..+++.+.+.+|..||.-|-
T Consensus 212 l~~YPp~p~~~~~~g~~~HtD~g~lTlL~q---d--~~GLQV~~~-----------~g~Wi~V~p~pgalVVNiGD~Le~ 275 (357)
T PLN02904 212 VNCYPACPEPEIALGMPPHSDFGSLTILLQ---S--SQGLQIMDC-----------NKNWVCVPYIEGALIVQLGDQVEV 275 (357)
T ss_pred eeecCCCCCcccccCCcCccCCCceEEEec---C--CCeeeEEeC-----------CCCEEECCCCCCeEEEEccHHHHH
Confidence 4667542 3446789999999999864 2 367876532 13578889999999999985
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+..-....||.+..|+.-+
T Consensus 276 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~p~ 306 (357)
T PLN02904 276 MSNGIYKSVVHRVTVNKDYKRLSFASLHSLP 306 (357)
T ss_pred HhCCeeeccCCcccCCCCCCEEEEEEeecCC
Confidence 67888755567899999998754
No 27
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=85.98 E-value=2.1 Score=42.53 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=53.9
Q ss_pred CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC------------CCc
Q 016060 260 RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR------------HRH 327 (396)
Q Consensus 260 ~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr------------h~H 327 (396)
....++.|+|.+.+||... ++ +.|||...... ..+++.+.+.+|..||.-|- .+|
T Consensus 164 ~~~g~~~HtD~g~lTlL~q--d~-~~~GLqV~~~~----------~g~Wi~V~p~pga~vVNiGD~l~~~TNG~~~St~H 230 (300)
T PLN02365 164 GSSGVQIHTDSGFLTILQD--DE-NVGGLEVMDPS----------SGEFVPVDPLPGTLLVNLGDVATAWSNGRLCNVKH 230 (300)
T ss_pred ccccccCccCCCceEEEec--CC-CcCceEEEECC----------CCeEEecCCCCCeEEEEhhHHHHHHhCCceecccc
Confidence 3456889999999998854 21 25677765320 13578899999999999886 578
Q ss_pred CCccCCccceeEEEeech
Q 016060 328 GARATTSGHRVNLLLWCR 345 (396)
Q Consensus 328 eglpVTsG~RynLV~W~r 345 (396)
.+..-....||.+..|+.
T Consensus 231 RVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 231 RVQCKEATMRISIASFLL 248 (300)
T ss_pred eeEcCCCCCEEEEEEEec
Confidence 877545567999999975
No 28
>PLN02947 oxidoreductase
Probab=85.31 E-value=2.8 Score=43.20 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=54.9
Q ss_pred CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC------------CCcC
Q 016060 261 DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR------------HRHG 328 (396)
Q Consensus 261 d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr------------h~He 328 (396)
...+++|+|-+.+||... + +.|||.... ..+++.+.+.+|..||.-|. .+|.
T Consensus 241 ~~G~~~HTD~g~lTlL~Q--d--~v~GLQV~~------------~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HR 304 (374)
T PLN02947 241 TLGMPPHSDYGFLTLLLQ--D--EVEGLQIMH------------AGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHR 304 (374)
T ss_pred ccCCCCccCCCceEEEEe--c--CCCCeeEeE------------CCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccccc
Confidence 346789999999999875 2 246777653 13578899999999999997 5688
Q ss_pred CccCCccceeEEEeechhh
Q 016060 329 ARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 329 glpVTsG~RynLV~W~rss 347 (396)
+..-..+.||.+..|+.-+
T Consensus 305 Vv~~~~~~R~Sia~F~~P~ 323 (374)
T PLN02947 305 VRVNSTKPRISVASLHSLP 323 (374)
T ss_pred cccCCCCCEEEEEEEecCC
Confidence 8655567799999999854
No 29
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.05 E-value=3.2 Score=42.30 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=58.8
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+ +.+..++.|+|-+.+||...=+ ..|||.... ..+++.+.+.+|..||.-|-
T Consensus 207 l~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~---~v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~Le~ 271 (348)
T PLN00417 207 FNMYPPCPRPDKVIGVKPHADGSAFTLLLPDK---DVEGLQFLK------------DGKWYKAPIVPDTILINVGDQMEI 271 (348)
T ss_pred eeecCCCCCcccccCCcCccCCCceEEEEecC---CCCceeEeE------------CCeEEECCCCCCcEEEEcChHHHH
Confidence 456744 2345688999999999875411 236677642 13578899999999999886
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+..-..+.||.+..|+.-+
T Consensus 272 ~Tng~~kSt~HRVv~~~~~~R~Si~fF~~P~ 302 (348)
T PLN00417 272 MSNGIYKSPVHRVVTNREKERISVATFCIPG 302 (348)
T ss_pred HhCCeecccceEEecCCCCCEEEEEEEecCC
Confidence 56888766667899999999854
No 30
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=83.99 E-value=4.3 Score=40.13 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=66.3
Q ss_pred ceeEEEEeCCCCCCCcccccC-----CceeEEEecccc----ccCcceEEccccccccccCCCCccceeeecCCCceEEE
Q 016060 250 HGFVVEYGKDRDVDLGFHVDD-----SEVTLNVCLGKQ----FTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVL 320 (396)
Q Consensus 250 ~~FVVrY~~~~d~~L~~H~D~-----SevTLNI~Ln~d----FeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlL 320 (396)
.+.|.+|- +.+...-.|+|+ -.+|---+||+. -.||.|+.....- ..+.+++|.-+..|+
T Consensus 144 kAMVAcYP-GNGtgYVrHVDNP~gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~----------~~~adieP~fdrLlf 212 (280)
T KOG3710|consen 144 KAMVACYP-GNGTGYVRHVDNPHGDGRCITCIYYLNQNWDVKVHGGILRIFPEGS----------TTFADIEPKFDRLLF 212 (280)
T ss_pred eEEEEEec-CCCceeeEeccCCCCCceEEEEEEEcccCcceeeccceeEeccCCC----------CcccccCcCCCeEEE
Confidence 56788894 555667678875 358999999864 4588887654321 123456899999999
Q ss_pred ecCC--CCcCCccCCccceeEEEeechhhHHHH
Q 016060 321 HRGR--HRHGARATTSGHRVNLLLWCRSSVFRE 351 (396)
Q Consensus 321 HpGr--h~HeglpVTsG~RynLV~W~rss~~R~ 351 (396)
|-.. .-||.+|... +||.+.+|...-.-|+
T Consensus 213 fwSdrrnPhev~Pa~~-tryaitvwyfda~era 244 (280)
T KOG3710|consen 213 FWSDRRNPHEVQPAYA-TRYAITVWYFDAKERA 244 (280)
T ss_pred EEecCCCccccccccc-cceEEEEEEeccccch
Confidence 9877 5599999987 5899999998765554
No 31
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.69 E-value=3.7 Score=41.80 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=58.8
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCC---
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRH--- 325 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGrh--- 325 (396)
+.+|-+- ....++.|+|-+.+||... ++ .|||.... ..+++.+.+.+|..||.-|-+
T Consensus 204 l~~YPp~~~~~~~~g~~aHTD~g~lTlL~Q--d~--v~GLQV~~------------~g~Wv~V~p~pgalVVNiGD~Le~ 267 (341)
T PLN02984 204 VYRYPQCSNEAEAPGMEVHTDSSVISILNQ--DE--VGGLEVMK------------DGEWFNVKPIANTLVVNLGDMMQV 267 (341)
T ss_pred EEeCCCCCCcccccCccCccCCCceEEEEe--CC--CCCeeEee------------CCceEECCCCCCeEEEECChhhhh
Confidence 4667552 2456889999999999875 22 36676541 135788999999999999973
Q ss_pred ---------CcCCc-cCCccceeEEEeechhhH
Q 016060 326 ---------RHGAR-ATTSGHRVNLLLWCRSSV 348 (396)
Q Consensus 326 ---------~Hegl-pVTsG~RynLV~W~rss~ 348 (396)
.|.+. +-....||.++.|+....
T Consensus 268 wTNg~~kSt~HRVv~~~~~~~R~Sia~F~~P~~ 300 (341)
T PLN02984 268 ISDDEYKSVLHRVGKRNKKKERYSICYFVFPEE 300 (341)
T ss_pred hcCCeeeCCCCccccCCCCCCeEEEEEEecCCC
Confidence 49984 444567999999998653
No 32
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=83.28 E-value=3.8 Score=40.60 Aligned_cols=88 Identities=22% Similarity=0.296 Sum_probs=67.6
Q ss_pred EEEEeCCCCCCCcccccCC------ceeEEEecc---ccccCcce-EEccccccccccCCCCccceeeecCCCceEEEec
Q 016060 253 VVEYGKDRDVDLGFHVDDS------EVTLNVCLG---KQFTGGEL-FFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHR 322 (396)
Q Consensus 253 VVrY~~~~d~~L~~H~D~S------evTLNI~Ln---~dFeGGgl-~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHp 322 (396)
+..|.++- .+..|-|+. .+|...+++ +.+-||+| .|...... .+.++...++.|.=+..++|-
T Consensus 140 ~~~y~~G~--~l~~H~D~~~~~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~-----~~~~~~~~ti~P~fn~lv~F~ 212 (252)
T COG3751 140 ITVYNPGC--FLLKHDDNGRDKDIRLATYVYYLTREWKPEYGGELRLFHSLQKN-----NTAADSFKTIAPVFNSLVFFK 212 (252)
T ss_pred eeEecCCc--eeEeecccCCCccceEEEEEeccCCCCCcCCCCceeeccccccc-----ccccccccccCCCCceEEEEE
Confidence 45677755 899998865 478888887 56889999 77654321 234466777889999999999
Q ss_pred CCCCcCCccCCc----cceeEEEeechhh
Q 016060 323 GRHRHGARATTS----GHRVNLLLWCRSS 347 (396)
Q Consensus 323 Grh~HeglpVTs----G~RynLV~W~rss 347 (396)
-+-.|+..+|-. +.|..+-.|.|..
T Consensus 213 s~~~Hs~h~V~~~~~~~~RlsV~GW~r~~ 241 (252)
T COG3751 213 SRPSHSVHSVEEPYAAADRLSVTGWFRRP 241 (252)
T ss_pred ecCCccceeccccccccceEEEeeEEecC
Confidence 998888887765 8899999999864
No 33
>PLN02216 protein SRG1
Probab=82.81 E-value=3.5 Score=42.11 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=58.7
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+ +....++.|+|-+.+||...-++ -|||.... ..+++.+.+.+|..||.-|-
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~---v~GLQV~~------------~g~Wi~V~p~pgalvVNiGD~L~~ 278 (357)
T PLN02216 214 MNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNE---VEGLQIKK------------DGKWVSVKPLPNALVVNVGDILEI 278 (357)
T ss_pred EeecCCCCCcccccCccCcccCceEEEEEecCC---CCceeEEE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 355644 23446889999999999764222 35676642 13578899999999999987
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+..-..+.||.++.|+..+
T Consensus 279 ~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~ 309 (357)
T PLN02216 279 ITNGTYRSIEHRGVVNSEKERLSVATFHNTG 309 (357)
T ss_pred hcCCeeeccCceeecCCCCCEEEEEEEecCC
Confidence 34888665667899999999866
No 34
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=82.80 E-value=3.1 Score=42.24 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=59.2
Q ss_pred EEEEeCCC------CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC--
Q 016060 253 VVEYGKDR------DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR-- 324 (396)
Q Consensus 253 VVrY~~~~------d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr-- 324 (396)
+.+|-+-. +..++.|+|-+.+||... + +.|||.... +..+++.+.+.+|..|+.-|-
T Consensus 182 l~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Q--d--~v~GLQV~~-----------~~g~Wi~Vpp~pga~VVNiGD~l 246 (335)
T PLN02156 182 MNHYPEKEETPEKVEIGFGEHTDPQLISLLRS--N--DTAGLQICV-----------KDGTWVDVPPDHSSFFVLVGDTL 246 (335)
T ss_pred EEeCCCCCCCccccccCCCCccCCCceEEEEe--C--CCCceEEEe-----------CCCCEEEccCCCCcEEEEhHHHH
Confidence 46675521 245788999999999865 2 346777642 124678899999999999886
Q ss_pred ----------CCcCCccCCccceeEEEeechhh
Q 016060 325 ----------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 ----------h~HeglpVTsG~RynLV~W~rss 347 (396)
..|.+..-....||.+..|+.-.
T Consensus 247 ~~wTNg~~kSt~HRVv~~~~~~R~SiafF~~P~ 279 (335)
T PLN02156 247 QVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPP 279 (335)
T ss_pred HHHhCCeeeccceeeecCCCCCEEEEEEeecCC
Confidence 67888766667799999999844
No 35
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=82.55 E-value=3.5 Score=41.82 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=60.8
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+- .+..+++|+|-+.+||... + +.|||..... +..+++.+.+.+|..||.-|-
T Consensus 197 ~~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d--~v~GLQV~~~----------~~g~Wi~V~p~pg~~vVNiGD~L~~ 262 (345)
T PLN02750 197 FNHYPPCPAPHLALGVGRHKDGGALTVLAQ--D--DVGGLQISRR----------SDGEWIPVKPIPDAFIINIGNCMQV 262 (345)
T ss_pred EEecCCCCCcccccCcCCCCCCCeEEEEec--C--CCCceEEeec----------CCCeEEEccCCCCeEEEEhHHHHHH
Confidence 4667542 3456889999999999654 2 3477876421 124678899999999999886
Q ss_pred --------CCcCCccCCccceeEEEeechhhH
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSSV 348 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss~ 348 (396)
.+|.+.......||.++.|+....
T Consensus 263 ~Tng~~~St~HRVv~~~~~~R~Si~~F~~P~~ 294 (345)
T PLN02750 263 WTNDLYWSAEHRVVVNSQKERFSIPFFFFPSH 294 (345)
T ss_pred HhCCeeecccceeccCCCCCEEEEEEeecCCC
Confidence 678888666677999999999763
No 36
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=82.48 E-value=3.8 Score=41.84 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC------------CCcC
Q 016060 261 DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR------------HRHG 328 (396)
Q Consensus 261 d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr------------h~He 328 (396)
+..++.|+|-+.+||... + ..|||..... .+++.+.+.+|..||.-|- .+|.
T Consensus 227 ~~g~~~HTD~g~lTlL~q--d--~v~GLQV~~~------------g~Wi~V~p~pg~lvVNiGD~L~~~TNG~~kSt~HR 290 (360)
T PLN03178 227 ALGVEAHTDVSALTFILH--N--MVPGLQVLYE------------GKWVTAKCVPDSIVVHIGDTLEILSNGRYKSILHR 290 (360)
T ss_pred ccCcCCccCCCceEEEee--C--CCCceeEeEC------------CEEEEcCCCCCeEEEEccHHHHHHhCCccccccce
Confidence 456889999999999854 2 2567776521 3578889999999999986 5788
Q ss_pred CccCCccceeEEEeechhh
Q 016060 329 ARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 329 glpVTsG~RynLV~W~rss 347 (396)
+..-..+.||.+..|+.-.
T Consensus 291 Vv~~~~~~R~Si~~F~~P~ 309 (360)
T PLN03178 291 GLVNKEKVRISWAVFCEPP 309 (360)
T ss_pred eecCCCCCeEEEEEEecCC
Confidence 7544456799999999975
No 37
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=82.32 E-value=3.9 Score=41.68 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=59.4
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+- .+..+++|+|-+.+||... + +.|||..... .+++.+.+.+|..||.-|-
T Consensus 201 l~~YPp~~~~~~~~G~~~HtD~g~lTlL~Q--d--~v~GLQV~~~------------g~Wi~V~p~pgalvVNiGD~L~~ 264 (348)
T PLN02912 201 INYYPPCPQPELTYGLPGHKDANLITVLLQ--D--EVSGLQVFKD------------GKWIAVNPIPNTFIVNLGDQMQV 264 (348)
T ss_pred eeecCCCCChhhcCCcCCCcCCCceEEEEE--C--CCCceEEEEC------------CcEEECCCcCCeEEEEcCHHHHH
Confidence 3556552 2446889999999999865 2 2567777521 3578889999999999886
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+.....+.||.+..|+.-.
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~ 295 (348)
T PLN02912 265 ISNDKYKSVLHRAVVNTDKERISIPTFYCPS 295 (348)
T ss_pred HhCCEEEcccccccCCCCCCEEEEEEEecCC
Confidence 57888755567899999999865
No 38
>PTZ00273 oxidase reductase; Provisional
Probab=81.40 E-value=3.6 Score=41.03 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=58.3
Q ss_pred EEEEeCC-----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC---
Q 016060 253 VVEYGKD-----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR--- 324 (396)
Q Consensus 253 VVrY~~~-----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr--- 324 (396)
+.+|-+. .+..+++|+|-+.+||... + ..|||..... ..+.+.+.+.+|..||.-|-
T Consensus 181 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d--~~~GLqV~~~-----------~g~Wi~V~p~pg~lvVNvGD~l~ 245 (320)
T PTZ00273 181 MKHYPALPQTKKGRTVCGEHTDYGIITLLYQ--D--SVGGLQVRNL-----------SGEWMDVPPLEGSFVVNIGDMME 245 (320)
T ss_pred eeecCCCCCccccCcccccccCCCeEEEEec--C--CCCceEEECC-----------CCCEEeCCCCCCeEEEEHHHHHH
Confidence 4667552 2345789999999999864 2 2467876532 13577889999999999874
Q ss_pred ---------CCcCCccCCccceeEEEeechhhH
Q 016060 325 ---------HRHGARATTSGHRVNLLLWCRSSV 348 (396)
Q Consensus 325 ---------h~HeglpVTsG~RynLV~W~rss~ 348 (396)
-+|.+.. ....||.++.|++-+.
T Consensus 246 ~~TnG~~kSt~HRVv~-~~~~R~Si~~F~~p~~ 277 (320)
T PTZ00273 246 MWSNGRYRSTPHRVVN-TGVERYSMPFFCEPNP 277 (320)
T ss_pred HHHCCeeeCCCccccC-CCCCeEEEEEEEcCCC
Confidence 6788863 3467999999999663
No 39
>PLN02485 oxidoreductase
Probab=81.36 E-value=2.3 Score=42.71 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=55.4
Q ss_pred CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC------------CCcC
Q 016060 261 DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR------------HRHG 328 (396)
Q Consensus 261 d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr------------h~He 328 (396)
+..++.|+|-+.+||... ++ .-|||..... ..+.+.+.+.+|..||.-|- -+|.
T Consensus 204 ~~g~~~HTD~g~lTlL~q--d~-~~~GLqV~~~-----------~g~Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HR 269 (329)
T PLN02485 204 DIGCGAHTDYGLLTLVNQ--DD-DITALQVRNL-----------SGEWIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHR 269 (329)
T ss_pred CcccccccCCCeEEEEec--cC-CCCeeeEEcC-----------CCcEEECCCCCCcEEEEhHHHHHHHHCCEeeCCCce
Confidence 446889999999999643 11 2367776531 13578889999999999885 4599
Q ss_pred CccCCccceeEEEeechhhH
Q 016060 329 ARATTSGHRVNLLLWCRSSV 348 (396)
Q Consensus 329 glpVTsG~RynLV~W~rss~ 348 (396)
+..-....||.++.|+....
T Consensus 270 Vv~~~~~~R~Si~~F~~p~~ 289 (329)
T PLN02485 270 VINNSPKYRVCVAFFYETNF 289 (329)
T ss_pred ecCCCCCCeEEEEEEecCCC
Confidence 98665667999999998663
No 40
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=79.99 E-value=4 Score=41.79 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=59.1
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+ +....+++|+|-+.+||... ++ .|||..... ..+++.+.+.+|..||.-|-
T Consensus 214 l~~YPp~p~~~~~~G~~~HtD~g~lTiL~Q--d~--v~GLQV~~~-----------~~~Wi~V~p~pgalVVNiGD~lq~ 278 (358)
T PLN02254 214 LNSYPVCPDPDRAMGLAPHTDSSLLTILYQ--SN--TSGLQVFRE-----------GVGWVTVPPVPGSLVVNVGDLLHI 278 (358)
T ss_pred EecCCCCCCcccccCcCCccCCCcEEEEec--CC--CCCceEECC-----------CCEEEEcccCCCCEEEEhHHHHHH
Confidence 466755 23456899999999999875 32 366776531 12578899999999999984
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+..-....||.+..|+.-.
T Consensus 279 ~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~ 309 (358)
T PLN02254 279 LSNGRFPSVLHRAVVNKTRHRISVAYFYGPP 309 (358)
T ss_pred HhCCeeccccceeecCCCCCEEEEEEEecCC
Confidence 67888654456799999999844
No 41
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=79.86 E-value=4.5 Score=41.44 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=59.9
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+ +.+..++.|+|.+.+||... + +.|||...... .++++.+.+.+|..||.-|-
T Consensus 199 l~~YP~~~~~~~~~G~~~HTD~g~lTlL~Q--d--~v~GLQV~~~~----------~~~Wi~Vpp~pgalVVNiGD~L~~ 264 (358)
T PLN02515 199 VNYYPKCPQPDLTLGLKRHTDPGTITLLLQ--D--QVGGLQATRDG----------GKTWITVQPVEGAFVVNLGDHGHY 264 (358)
T ss_pred EeecCCCCChhhccCCCCCCCCCeEEEEec--C--CCCceEEEECC----------CCeEEECCCCCCeEEEEccHHHHH
Confidence 455654 23446889999999999865 2 24678775321 13578899999999999985
Q ss_pred --------CCcCCccCCccceeEEEeechhhH
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSSV 348 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss~ 348 (396)
.+|.+..-..+.||.++.|+.-+.
T Consensus 265 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~~P~~ 296 (358)
T PLN02515 265 LSNGRFKNADHQAVVNSNCSRLSIATFQNPAP 296 (358)
T ss_pred HhCCeeeeecceEECCCCCCEEEEEEEecCCC
Confidence 578876666678999999998653
No 42
>PLN02704 flavonol synthase
Probab=78.92 E-value=5.9 Score=40.03 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=54.5
Q ss_pred CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC------------CCcC
Q 016060 261 DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR------------HRHG 328 (396)
Q Consensus 261 d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr------------h~He 328 (396)
+-.++.|+|-+.+||... ++ .|||.... ..+.+.+.+.+|..||.-|- -+|.
T Consensus 215 ~~g~~~HtD~g~lTlL~q--d~--v~GLQV~~------------~g~Wi~V~p~pg~lvVNvGD~L~~~TNg~~kSt~HR 278 (335)
T PLN02704 215 ALGVVAHTDMSAITILVP--NE--VQGLQVFR------------DDHWFDVKYIPNALVIHIGDQIEILSNGKYKSVLHR 278 (335)
T ss_pred ccCccCccCCcceEEEec--CC--CCceeEeE------------CCEEEeCCCCCCeEEEEechHHHHHhCCeeecccce
Confidence 345889999999999875 33 55777642 13578889999999999996 5688
Q ss_pred CccCCccceeEEEeechhh
Q 016060 329 ARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 329 glpVTsG~RynLV~W~rss 347 (396)
+..--...||.++.|+.-.
T Consensus 279 Vv~~~~~~R~Si~~F~~p~ 297 (335)
T PLN02704 279 TTVNKEKTRMSWPVFLEPP 297 (335)
T ss_pred eecCCCCCeEEEEEEecCC
Confidence 8644456799999999865
No 43
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=78.72 E-value=2.7 Score=39.52 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=51.1
Q ss_pred eEEEEeCCCCC-----CCcccccCCceeEEEecc-ccccCcceEEccccccccccCCCCccceeeecCCCceEEEec-CC
Q 016060 252 FVVEYGKDRDV-----DLGFHVDDSEVTLNVCLG-KQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHR-GR 324 (396)
Q Consensus 252 FVVrY~~~~d~-----~L~~H~D~SevTLNI~Ln-~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHp-Gr 324 (396)
+-+|+.+..+. -=+.|.|..++++..+++ ..-+||++......... -...--..+|.+++.- .+
T Consensus 99 Hq~Ri~a~~~~~g~ptPEGiH~DG~d~v~~~li~r~Ni~GG~s~i~~~~~~~---------~~~~~l~~p~d~l~~~D~~ 169 (195)
T PF10014_consen 99 HQIRIIATPDEPGEPTPEGIHRDGVDFVFIHLINRHNIEGGESQIYDNDKEI---------LFFFTLLEPGDTLLVDDRR 169 (195)
T ss_dssp EEEEEETTTS--B--STTSSB--SSSEEEEEEEEEESEEE--EEEEETTSSE---------EEEE---STTEEEEEETTT
T ss_pred EEEEEEEecCccCCcCCCCccCCCCCEEEEEEEcCCCccCceEEEEeCCCCc---------ceEEEecCCCCEEEEeCCc
Confidence 34666664333 357999999999998887 46799999986443211 1122245889998888 66
Q ss_pred CCcCCccCCc------cceeEEEee
Q 016060 325 HRHGARATTS------GHRVNLLLW 343 (396)
Q Consensus 325 h~HeglpVTs------G~RynLV~W 343 (396)
.+|++.||+. |.|-+||+-
T Consensus 170 ~~H~vtpI~~~~~~~~g~RDvlvit 194 (195)
T PF10014_consen 170 VWHYVTPIRPVDPSRPGYRDVLVIT 194 (195)
T ss_dssp EEEEE--EEES-TT---EEEEEEEE
T ss_pred ceECCCceecCCCCCcEEEEEEEEe
Confidence 9999999873 888888863
No 44
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=78.52 E-value=6.4 Score=39.68 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=57.5
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+- ....+++|+|-+.+||...= + +.|||.... ..+.+.+.+.+|..||.-|-
T Consensus 162 l~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd--~-~v~GLQV~~------------~g~Wi~V~p~pg~lvVNiGD~l~~ 226 (321)
T PLN02299 162 VSNYPPCPKPDLVKGLRAHTDAGGIILLFQD--D-KVSGLQLLK------------DGEWVDVPPMRHSIVVNLGDQLEV 226 (321)
T ss_pred eEecCCCCCcccccCccCccCCCeEEEEEec--C-CCCCcCccc------------CCeEEECCCCCCeEEEEeCHHHHH
Confidence 4677542 23357799999999997531 1 235665431 13577889999999999986
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+..-..+.||.+..|+.-+
T Consensus 227 ~Tng~~kS~~HRVv~~~~~~R~Si~~F~~p~ 257 (321)
T PLN02299 227 ITNGKYKSVMHRVVAQTDGNRMSIASFYNPG 257 (321)
T ss_pred HhCCceecccceeecCCCCCEEEEEEEecCC
Confidence 56888755567899999999854
No 45
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=75.68 E-value=9.8 Score=38.94 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=57.2
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+ +....+++|+|-+.+||...- ++ -|||.... ..+.+.+.+.+|..||.-|-
T Consensus 217 l~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~-~~--v~GLQV~~------------~g~W~~V~p~pgalVVNiGD~l~~ 281 (362)
T PLN02393 217 VNYYPKCPQPDLTLGLSPHSDPGGMTILLPD-DN--VAGLQVRR------------DDAWITVKPVPDAFIVNIGDQIQV 281 (362)
T ss_pred eeecCCCCCcccccccccccCCceEEEEeeC-CC--CCcceeeE------------CCEEEECCCCCCeEEEEcchhhHh
Confidence 456743 234468899999999997641 11 25666542 13578889999999999987
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+..-....||.++.|+.-+
T Consensus 282 ~Tng~~kSt~HRVv~~~~~~R~SiafF~~P~ 312 (362)
T PLN02393 282 LSNAIYKSVEHRVIVNSAKERVSLAFFYNPK 312 (362)
T ss_pred hcCCeeeccceecccCCCCCEEEEEEEecCC
Confidence 46888644455799999999865
No 46
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=75.10 E-value=11 Score=37.91 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=57.7
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCc-eEEEecCC---
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPG-RAVLHRGR--- 324 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G-~AlLHpGr--- 324 (396)
+.+|.+- ....+++|+|-+.+||...-+ .-|||.... ..+.+.+.+.+| ..||.-|-
T Consensus 157 l~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~---~v~GLqV~~------------~g~Wi~V~p~p~~~lvVNvGD~L~ 221 (303)
T PLN02403 157 VAKYPECPRPELVRGLREHTDAGGIILLLQDD---QVPGLEFLK------------DGKWVPIPPSKNNTIFVNTGDQLE 221 (303)
T ss_pred eEcCCCCCCcccccCccCccCCCeEEEEEecC---CCCceEecc------------CCeEEECCCCCCCEEEEEehHHHH
Confidence 5677552 223578999999999876432 135676531 135777888984 77788775
Q ss_pred ---------CCcCCccCCccceeEEEeechhhH
Q 016060 325 ---------HRHGARATTSGHRVNLLLWCRSSV 348 (396)
Q Consensus 325 ---------h~HeglpVTsG~RynLV~W~rss~ 348 (396)
.+|.+.....+.||.+..|+....
T Consensus 222 ~~Tng~~~S~~HRVv~~~~~~R~Si~~F~~p~~ 254 (303)
T PLN02403 222 VLSNGRYKSTLHRVMADKNGSRLSIATFYNPAG 254 (303)
T ss_pred HHhCCeeecccceeecCCCCCEEEEEEEEcCCC
Confidence 578888766778999999999653
No 47
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=75.07 E-value=9.9 Score=38.45 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=58.1
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+- .+..++.|+|-+.+||... ++ ..|||.... ..+++.+.+.+|..||.-|-
T Consensus 194 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~q--d~-~v~GLQV~~------------~g~Wi~V~p~pg~lVVNiGD~L~~ 258 (337)
T PLN02639 194 VNYYPPCPEPELTYGLPAHTDPNALTILLQ--DQ-QVAGLQVLK------------DGKWVAVNPHPGAFVINIGDQLQA 258 (337)
T ss_pred EEcCCCCCCcccccCCCCCcCCCceEEEEe--cC-CcCceEeec------------CCeEEeccCCCCeEEEechhHHHH
Confidence 4566552 2345889999999999653 21 235676542 13678889999999999985
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+.......||.+..|+...
T Consensus 259 ~TNG~~kSt~HRVv~~~~~~R~Sia~F~~p~ 289 (337)
T PLN02639 259 LSNGRYKSVWHRAVVNTDKERMSVASFLCPC 289 (337)
T ss_pred HhCCeeeccCcccccCCCCCEEEEEEEecCC
Confidence 67888655567899999999854
No 48
>PLN02997 flavonol synthase
Probab=73.09 E-value=12 Score=37.81 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=57.6
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+- ....+++|+|-+.+||... ++ -|||..... .+.+.+.+.+|..||.-|-
T Consensus 187 l~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q--d~--v~GLQV~~~------------g~Wi~V~p~pgalvVNiGD~Le~ 250 (325)
T PLN02997 187 VNFYPPTQDTELVIGAAAHSDMGAIALLIP--NE--VPGLQAFKD------------EQWLDLNYINSAVVVIIGDQLMR 250 (325)
T ss_pred eecCCCCCCcccccCccCccCCCceEEEec--CC--CCCEEEeEC------------CcEEECCCCCCeEEEEechHHHH
Confidence 3556542 2346889999999999864 32 356776521 3577889999999999996
Q ss_pred --------CCcCCccCCccceeEEEeechhhH
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSSV 348 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss~ 348 (396)
.+|.+..-....||.+..|+.-..
T Consensus 251 ~TNG~~kSt~HRVv~~~~~~R~Si~fF~~P~~ 282 (325)
T PLN02997 251 MTNGRFKNVLHRAKTDKERLRISWPVFVAPRA 282 (325)
T ss_pred HhCCccccccceeeCCCCCCEEEEEEEecCCC
Confidence 458886444556999999998663
No 49
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=73.02 E-value=11 Score=38.59 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=57.1
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+ +....++.|+|-+.+||... ++=.-|||..... .+++.+.+.+|..|+.-|-
T Consensus 215 ~~~YP~~~~~~~~~g~~~HtD~g~lTlL~q--d~~~v~GLQV~~~------------g~Wi~V~p~pgalVVNiGD~L~~ 280 (361)
T PLN02758 215 MNYYPPCSRPDLVLGLSPHSDGSALTVLQQ--GKGSCVGLQILKD------------NTWVPVHPVPNALVINIGDTLEV 280 (361)
T ss_pred eecCCCCCCcccccCccCccCCceeEEEEe--CCCCCCCeeeeeC------------CEEEeCCCCCCeEEEEccchhhh
Confidence 355643 23446789999999999864 1101245765421 3577889999999999996
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+..-....||.+..|+...
T Consensus 281 ~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~ 311 (361)
T PLN02758 281 LTNGKYKSVEHRAVTNKEKDRLSIVTFYAPS 311 (361)
T ss_pred hcCCeeecccceeecCCCCCEEEEEEEecCC
Confidence 57888755456799999999854
No 50
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.08 E-value=6.5 Score=37.52 Aligned_cols=104 Identities=23% Similarity=0.385 Sum_probs=63.2
Q ss_pred cCCcEEEec-CCCHHHHHHHHHHHHhhh--hhhhcccccccccCCCCcccccccccChH-HHHHHHHHHHhhhhhhhhcc
Q 016060 164 PSPGVFTFE-MLQPRFCELLLAEVENFE--KWVNEAKFRIMRPNTMNKYGAVLDDFGLE-TMLDKLMETYIRPLSKVFFA 239 (396)
Q Consensus 164 p~P~Vy~fp-vfspefC~~LIeE~E~f~--~ws~gs~~~i~rPn~mN~ygvvLddiGl~-~~~~~Ll~~yl~Pl~~~LfP 239 (396)
.+|.++-+| +.++++=..++.-+|+-- +|..-.+ .-..|||=|...-||- ..+-..+..|+.-|...
T Consensus 10 ~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~N------RRLqNyGGvvh~~glipeelP~wLq~~v~kinnl--- 80 (224)
T KOG3200|consen 10 SAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLAN------RRLQNYGGVVHKTGLIPEELPPWLQYYVDKINNL--- 80 (224)
T ss_pred ccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHh------hhhhhcCCccccCCcCccccCHHHHHHHHHhhcc---
Confidence 456766666 889998888888888754 4532122 2355788888887873 22222222333333211
Q ss_pred cccCCCCcccceeEEEEeCCCCCCCcccccCCce---eEEEecc
Q 016060 240 EVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEV---TLNVCLG 280 (396)
Q Consensus 240 e~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Sev---TLNI~Ln 280 (396)
++.++ ...|-.|-+|-||+ .+-+|.|.--| --.|+||
T Consensus 81 glF~s--~~NHVLVNeY~pgq--GImPHtDGPaf~piVstiSlG 120 (224)
T KOG3200|consen 81 GLFKS--PANHVLVNEYLPGQ--GIMPHTDGPAFHPIVSTISLG 120 (224)
T ss_pred cccCC--CcceeEeecccCCC--CcCcCCCCCcccceEEEEecC
Confidence 22223 35578899999988 89999997643 2344554
No 51
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=71.30 E-value=11 Score=35.01 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=41.3
Q ss_pred ceeEEEEeCCCCCCCcccccCCce-----eEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC
Q 016060 250 HGFVVEYGKDRDVDLGFHVDDSEV-----TLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR 324 (396)
Q Consensus 250 ~~FVVrY~~~~d~~L~~H~D~Sev-----TLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr 324 (396)
...|-.|.++ ..+++|.|+++. -+.|+||. .+.|.= +.. ...+....+....|..||-.|.
T Consensus 96 ~~LvN~Y~~G--d~mg~H~D~~e~~~~~pI~SvSLG~-----~r~F~~-~~~------~~~~~~~~l~L~sGsllvM~G~ 161 (169)
T TIGR00568 96 ACLVNRYAPG--ATLSLHQDRDEPDLRAPLLSVSLGL-----PAIFLI-GGL------KRNDPPKRLRLHSGDVVIMGGE 161 (169)
T ss_pred EEEEEeecCC--CccccccccccccCCCCEEEEeCCC-----CEEEEe-cCC------cCCCceEEEEeCCCCEEEECCc
Confidence 4567789887 489999998765 35666653 222321 100 0112345668899999999888
Q ss_pred ---CCcC
Q 016060 325 ---HRHG 328 (396)
Q Consensus 325 ---h~He 328 (396)
.+||
T Consensus 162 sR~~~Hg 168 (169)
T TIGR00568 162 SRLAFHG 168 (169)
T ss_pred hhccccC
Confidence 5555
No 52
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=70.48 E-value=11 Score=34.19 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=47.0
Q ss_pred cceeEEEEeCCCCCCCcccccCCceeEEEecc--ccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCC
Q 016060 249 HHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLG--KQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHR 326 (396)
Q Consensus 249 h~~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln--~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGrh~ 326 (396)
...++.+-.|+. .+.+|.|.+...+.+-|+ .. -++++|.-.+ + .+.-+.|.++++-.+..
T Consensus 80 ~~~~~s~l~pg~--~I~pH~d~~~~~lR~Hl~L~~p--~~~~~~~v~~------------~--~~~w~~G~~~~fD~s~~ 141 (163)
T PF05118_consen 80 GRVRFSRLPPGT--HIKPHRDPTNLRLRLHLPLIVP--NPGCYIRVGG------------E--TRHWREGECWVFDDSFE 141 (163)
T ss_dssp EEEEEEEEECTE--EEEEE-SS-TTEEEEEEEEC----STTEEEEETT------------E--EEB--CTEEEEE-TTS-
T ss_pred hhEEEEEECCCC--EECCeeCCCCcceEEEEEEEcC--CCCeEEEECC------------e--EEEeccCcEEEEeCCEE
Confidence 345556666754 999999987654444443 22 2445554211 1 23568999999999999
Q ss_pred cCCccCCccceeEEEe
Q 016060 327 HGARATTSGHRVNLLL 342 (396)
Q Consensus 327 HeglpVTsG~RynLV~ 342 (396)
|++.--....|.+|++
T Consensus 142 H~~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 142 HEVWNNGDEDRVVLIV 157 (163)
T ss_dssp EEEEESSSS-EEEEEE
T ss_pred EEEEeCCCCCEEEEEE
Confidence 9999999999999986
No 53
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=68.28 E-value=12 Score=37.95 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=60.0
Q ss_pred EEEEeC----CCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGK----DRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~----~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|.+ +.--.+++|.|.|-+|+.+.-+ +=|||.+.. +..+++.+.|.+|.-|+.-|-
T Consensus 180 ~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~---~V~GLQv~~-----------~dg~Wi~V~P~p~a~vVNiGD~l~~ 245 (322)
T KOG0143|consen 180 LNYYPPCPEPELTLGLGAHTDKSFLTILLQDD---DVGGLQVFT-----------KDGKWIDVPPIPGAFVVNIGDMLQI 245 (322)
T ss_pred EeecCCCcCccccccccCccCcCceEEEEccC---CcCceEEEe-----------cCCeEEECCCCCCCEEEEcccHHhH
Confidence 567755 4455788999999988876422 345566553 113578889999999999864
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+.....+.||.+..|+-..
T Consensus 246 lSNG~ykSv~HRV~~n~~~~R~Sia~F~~p~ 276 (322)
T KOG0143|consen 246 LSNGRYKSVLHRVVVNGEKERISVAFFVFPP 276 (322)
T ss_pred hhCCcccceEEEEEeCCCCceEEEEEEecCC
Confidence 67999988888899999988744
No 54
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=66.66 E-value=15 Score=37.02 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=58.4
Q ss_pred EEEEeCCC-----CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC---
Q 016060 253 VVEYGKDR-----DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR--- 324 (396)
Q Consensus 253 VVrY~~~~-----d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr--- 324 (396)
+.+|-+-. +-.+++|+|-+.+||... ++ -|||......- ....+++.+.+.+|..||.-|.
T Consensus 186 l~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q--d~--v~GLQV~~~~~-------~~~g~Wi~Vpp~pg~~VVNiGD~L~ 254 (332)
T PLN03002 186 LLRYQGISDPSKGIYACGAHSDFGMMTLLAT--DG--VMGLQICKDKN-------AMPQKWEYVPPIKGAFIVNLGDMLE 254 (332)
T ss_pred eeeCCCCCCcccCccccccccCCCeEEEEee--CC--CCceEEecCCC-------CCCCcEEECCCCCCeEEEEHHHHHH
Confidence 46675522 335789999999999854 33 46777642110 0124688899999999999986
Q ss_pred ---------CCcCCccCCccceeEEEeechhh
Q 016060 325 ---------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 ---------h~HeglpVTsG~RynLV~W~rss 347 (396)
.+|.+. +....||.+..|+.-.
T Consensus 255 ~wTng~~kSt~HRVv-~~~~~R~Sia~F~~p~ 285 (332)
T PLN03002 255 RWSNGFFKSTLHRVL-GNGQERYSIPFFVEPN 285 (332)
T ss_pred HHhCCeeECcCCeec-CCCCCeeEEEEEecCC
Confidence 458886 3356799999999865
No 55
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=65.88 E-value=4.1 Score=43.43 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=67.6
Q ss_pred eEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC--CCcCCccCCccceeEEEeechhhHHHH
Q 016060 274 TLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR--HRHGARATTSGHRVNLLLWCRSSVFRE 351 (396)
Q Consensus 274 TLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr--h~HeglpVTsG~RynLV~W~rss~~R~ 351 (396)
....++++||+||++.|....-.. ++ ...+++.|.-+-+..+ .-|+..+||+|.|-.+-+|.-.+ +.
T Consensus 369 ~a~~~~~dd~~~~el~~t~~d~~t-~~--------a~~k~~~~re~~~~~g~e~~~~~~~~~kg~e~~~~lw~~~~--~~ 437 (471)
T KOG4459|consen 369 FALLYLNDDFEGGELLFTEPDAKT-YT--------AISKPECGRECAFSSGAENPHGVKAVTKGLECAVALWPTLA--PL 437 (471)
T ss_pred hccHhhcCccccccceecCCcccc-hh--------hccccccccchhhhccccCccchhhhhhhhHHhhhcCcccC--hh
Confidence 334456899999999998754321 11 1236677777766666 88999999999999999998866 22
Q ss_pred HHhhhhccccchhhhhhhHHHHHHHhHHhhhhccccccCc
Q 016060 352 MKRYQKDFSSWCGECFREKKERQRLSIAATKSVKNSVLPM 391 (396)
Q Consensus 352 ~~~y~~~f~~~c~~c~~~~~~~~~~~~~a~~~~~~~~~~~ 391 (396)
-+ +|.+...|.+.+...-...++|.-.+|
T Consensus 438 ~r-----------e~~~~~~e~~~~~~~~~~~~~~e~~~~ 466 (471)
T KOG4459|consen 438 NR-----------ECESIVAEEQCSRAIVESAEHNECGEW 466 (471)
T ss_pred hh-----------cccchhHHHHHHHHHHHHhcccccccc
Confidence 22 677777777776666666677665554
No 56
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.75 E-value=33 Score=34.92 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=59.7
Q ss_pred cceeEEEEeCCCCCC----CcccccCC--------ceeEEEeccc-cccCcceEEcccccccc---ccCCC-Cc--ccee
Q 016060 249 HHGFVVEYGKDRDVD----LGFHVDDS--------EVTLNVCLGK-QFTGGELFFRGTRCEKH---VNTGS-QT--EEIF 309 (396)
Q Consensus 249 h~~FVVrY~~~~d~~----L~~H~D~S--------evTLNI~Ln~-dFeGGgl~F~g~~c~~h---v~~~~-~~--~e~~ 309 (396)
++.+|..=.++.+.. -.+|.|-. .|.+-|+|-+ .=+-|-|++.-..-+-. .+.+. .- ...+
T Consensus 114 ~~~~v~~~~~~~~~p~~~~t~~HqD~~~~~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~ 193 (299)
T COG5285 114 RHGHVLWKMPGFQKPGAVATRWHQDYPLVSPGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAV 193 (299)
T ss_pred cCCeEEEecCCCCCCcccccccccccccccCCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcce
Confidence 356676666666555 88999932 2555566643 23345566653321110 00000 00 2256
Q ss_pred eecCCCceEEEecCCCCcCCccCCccc--eeEEEeechhh
Q 016060 310 DYSHVPGRAVLHRGRHRHGARATTSGH--RVNLLLWCRSS 347 (396)
Q Consensus 310 ~y~~~~G~AlLHpGrh~HeglpVTsG~--RynLV~W~rss 347 (396)
.+...+|.+|+|.|++.|+|..=++|. +.+.+-|+.+-
T Consensus 194 pv~lekGDallF~~~L~HaA~aNrT~~~R~A~~~~~~~~~ 233 (299)
T COG5285 194 PVELEKGDALLFNGSLWHAAGANRTSADRVALTLQFTVSF 233 (299)
T ss_pred eeeecCCCEEEEcchhhhhhhcCCCCcccceEEEEEeecc
Confidence 678899999999999999999988885 34445555544
No 57
>PHA02866 Hypothetical protein; Provisional
Probab=60.52 E-value=85 Score=32.31 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=58.1
Q ss_pred CcccceeEEEEeCCCCCCCccccc----CC----ceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCce
Q 016060 246 LDSHHGFVVEYGKDRDVDLGFHVD----DS----EVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGR 317 (396)
Q Consensus 246 Ldsh~~FVVrY~~~~d~~L~~H~D----~S----evTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~ 317 (396)
++.|.. +|+|..+- +|.-|+| ++ +++|.++|+.-=+||++.++-..++. ...-.
T Consensus 79 v~~~~t-~vk~~kg~--~fdn~~~~~~~~~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~t~---------------i~~~~ 140 (333)
T PHA02866 79 VCEHLT-IVKCFKGV--GFDNRFSILTEDRHRGREYTLVLHLSSPKNGGKTDVCVGDKTV---------------ISTAD 140 (333)
T ss_pred EeeeEE-EEEEeccc--ccccceeEEEeccCCceEEEEEEEEeccccCCceEEEeCCCce---------------Eeecc
Confidence 355655 48887754 6666665 33 69999999999999999998444432 23345
Q ss_pred EEEecCCCCcCCccCCccceeEEE
Q 016060 318 AVLHRGRHRHGARATTSGHRVNLL 341 (396)
Q Consensus 318 AlLHpGrh~HeglpVTsG~RynLV 341 (396)
=+||--+..|+-.-|.+|++++++
T Consensus 141 DvLFDKsl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 141 DFLLEKRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred ceeeeccccccceeeecCcEEEEE
Confidence 688999999999999999997664
No 58
>PHA02923 hypothetical protein; Provisional
Probab=60.35 E-value=23 Score=36.10 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=59.2
Q ss_pred cccceeEEEEeCCCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCC
Q 016060 247 DSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHR 326 (396)
Q Consensus 247 dsh~~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGrh~ 326 (396)
+.+-.| ++|.++.+-.+ .| |+-++.|.++|+..=+||.+.|...+-. ...-.=+||--+.-
T Consensus 66 ~n~iT~-ikYekgd~~~l-~~-~~~~y~LvLyL~~p~~GGt~i~~~~~t~----------------i~~~~DvLFdKsl~ 126 (315)
T PHA02923 66 SSTISF-IKYNPFNDTTL-TD-DNMGYYLVIYLNRPKSGKTLIYPTPETV----------------ITSSEDIMFSKSLN 126 (315)
T ss_pred eceEEE-EEEcCCCccee-ec-CceEEEEEEEEeccCCCCeEEEecCCCe----------------Eeeccceeeecccc
Confidence 455554 89999886455 34 6688999999998888999998875522 23345588999999
Q ss_pred cCCccCCccceeEEEe
Q 016060 327 HGARATTSGHRVNLLL 342 (396)
Q Consensus 327 HeglpVTsG~RynLV~ 342 (396)
|+-.-|.+|++.+++.
T Consensus 127 h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 127 FRFENVKRGYKLVMCS 142 (315)
T ss_pred cceeeeecCcEEEEEE
Confidence 9999999999998655
No 59
>PF10637 Ofd1_CTDD: Oxoglutarate and iron-dependent oxygenase degradation C-term; InterPro: IPR019601 This entry represents the C-terminal degradation domain of oxoglutarate and iron-dependent oxygenase (Ofd1), the domain being conserved from yeasts to humans. Ofd1 is a prolyl 4-hydroxylase-like 2-oxoglutarate-Fe(II) dioxygenase that accelerates the degradation of Sre1N (the N-terminal transcription factor domain of Sre1) in the presence of oxygen []. Yeast Sre1 is the orthologue of mammalian sterol regulatory element binding protein (SREBP), and it responds to changes in oxygen-dependent sterol synthesis as an indirect measure of oxygen availability. However, unlike the prolyl 4-hydroxylases that regulate mammalian hypoxia-inducible factor, Ofd1 uses multiple domains to regulate Sre1N degradation by oxygen; the Ofd1 N-terminal dioxygenase domain is required for oxygen sensing and this Ofd1 C-terminal domain accelerates Sre1N degradation in yeasts []. ; GO: 0005506 iron ion binding, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0031418 L-ascorbic acid binding, 0055114 oxidation-reduction process; PDB: 3KT4_A 3KT1_A 3KT7_A 3MGU_A.
Probab=49.11 E-value=41 Score=33.56 Aligned_cols=127 Identities=18% Similarity=0.260 Sum_probs=49.4
Q ss_pred CcEEEecCCCHHHHHHHHHHHHhhhh-----hhhccc----ccccccCCCCccccccccc----------ChHHH----H
Q 016060 166 PGVFTFEMLQPRFCELLLAEVENFEK-----WVNEAK----FRIMRPNTMNKYGAVLDDF----------GLETM----L 222 (396)
Q Consensus 166 P~Vy~fpvfspefC~~LIeE~E~f~~-----ws~gs~----~~i~rPn~mN~ygvvLddi----------Gl~~~----~ 222 (396)
.-|---.+|.+++++.|-+.++.-+. +..... -.+.+|-+..+|-.+-..- ++... +
T Consensus 31 S~i~L~~FL~~~~~~~L~~~l~~~e~~~~~~p~~~~~~~~~W~~~gPphK~rY~~~~~~~~~~~~~~~~~pl~e~~~~~l 110 (266)
T PF10637_consen 31 SEIQLENFLKPEKAEQLKEALESQEIEDLSLPQSSKEVEKPWKVAGPPHKRRYLYLDPKSEASINSDNKSPLPELPPFLL 110 (266)
T ss_dssp SEEEESS-B-HHHHHHHHHHHHHHHHH-S----SGGG--TT-EE-B-TTTEE-EEE-SSSHHHHHHHH---------SHH
T ss_pred ceEeHHHhcCHHHHHHHHHHHHhhccccccCCCcccccCCCceECCCChhhheeEeCCcccccccccccccccchhHHHH
Confidence 45666689999999999998875432 000000 1224455555555542222 12111 1
Q ss_pred HHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCccccc--CCceeEEEecc-c------cccCcceEEcc
Q 016060 223 DKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVD--DSEVTLNVCLG-K------QFTGGELFFRG 292 (396)
Q Consensus 223 ~~Ll~~yl~Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D--~SevTLNI~Ln-~------dFeGGgl~F~g 292 (396)
..+..-+-+....++.-.+.|-.+-++...+-|+.+|.|=-|.-..| +..+-+++||+ . ++-|-++|..+
T Consensus 111 ~~l~~lf~S~aF~~~L~~~TgL~l~~~~~~~RRfr~G~dYTLa~~~~~~~~~Ld~~L~ltp~~~W~~~e~GG~e~Ym~~ 189 (266)
T PF10637_consen 111 RELMDLFKSEAFFKWLSNLTGLDLTSCQIEARRFRPGLDYTLATDEDEEEPRLDVTLCLTPSKGWESGEVGGYECYMAG 189 (266)
T ss_dssp HHHHHHHHSHHHHHHHHHHHSEEE-EEEEEEEEE-TTT-EE--B---EEEEEEEEEEEE---S-TTTTTT---EEEEE-
T ss_pred HHHHHHcCCHHHHHHHHHHHCCCCccCceEEEEccCCCCeEEecCCCCCceEEEEEEEecCCCCCCCCccccEEEEEcC
Confidence 11111111111111111222323344556677888886555555555 33455555553 2 67777888744
No 60
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=43.92 E-value=6.8 Score=42.13 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=62.4
Q ss_pred cccCChhHHHHhhhcCCCccCCCCHHHHHHHHHHHHHHhCCcchhhhhhccHHHhhhHHh------cCC---CCCccccc
Q 016060 64 QLDFSPSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERTRVQRHRDYRQKIIT------NYQ---PLHRELYN 134 (396)
Q Consensus 64 ~~~~~~~~~~~~e~~lp~~~~~~~~~~k~~~~~~il~~~~~~~~r~r~~~~~e~~~~I~~------~Y~---plhpdly~ 134 (396)
.++|.+++ +-++--+|--.|+.||-.--...-.|..+|+|..-|.|++--+-||-+|.= +|- ..-||+|+
T Consensus 107 n~~Y~~d~-gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~ 185 (669)
T KOG3636|consen 107 NMDYIKDI-GWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYT 185 (669)
T ss_pred CCcccccc-cHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHH
Confidence 46777764 556667788899999999999999999999999999999999999987752 222 46789999
Q ss_pred cCcccccCchhH
Q 016060 135 LHIGNFFVPPFV 146 (396)
Q Consensus 135 lnpe~~l~P~f~ 146 (396)
+| ||..-|.
T Consensus 186 ln---Wf~sLFa 194 (669)
T KOG3636|consen 186 LN---WFASLFA 194 (669)
T ss_pred HH---HHHHHHH
Confidence 85 5554444
No 61
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=43.65 E-value=34 Score=34.98 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=51.4
Q ss_pred ccccc-ccccChHHHHHHHHHHHhhhhhhhhcccccC-CCCcccceeEEEEeCCCCCCCcccccCCc------eeEEEec
Q 016060 208 KYGAV-LDDFGLETMLDKLMETYIRPLSKVFFAEVGG-STLDSHHGFVVEYGKDRDVDLGFHVDDSE------VTLNVCL 279 (396)
Q Consensus 208 ~ygvv-LddiGl~~~~~~Ll~~yl~Pl~~~LfPe~~g-~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se------vTLNI~L 279 (396)
.||++ +|++.-...-+..+-+.+.|+...+|...-. ++=-++. -.-|.. ..|++|+|++- +-+.=||
T Consensus 136 ~YGi~fvd~V~pT~e~TEkl~~r~~pv~~TffG~mW~Fsd~p~~~--DTAYtk---l~lg~HTD~TYF~~~~GiQvfHCl 210 (371)
T KOG3889|consen 136 KYGIIFVDGVEPTSEATEKLCQRLVPVHDTFFGQMWVFSDEPAYE--DTAYTK---LELGPHTDGTYFDQTPGIQVFHCL 210 (371)
T ss_pred heeEEEEcCCCchhHHHHHHHHHhhHHHHhhhheeEEecCCCccc--ccccee---eeecccCCCceeccCCCceEEEee
Confidence 38887 4555444445555566889999999965311 1100110 122432 37999999764 5677789
Q ss_pred cccccCcceEEcc
Q 016060 280 GKQFTGGELFFRG 292 (396)
Q Consensus 280 n~dFeGGgl~F~g 292 (396)
.-.=+||+++|-+
T Consensus 211 ~h~gtGG~t~lVD 223 (371)
T KOG3889|consen 211 THAGTGGDTVLVD 223 (371)
T ss_pred cccCCCCceEEEe
Confidence 8888999999974
No 62
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=41.78 E-value=56 Score=33.28 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred ccccc-ccccChHHHHHHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCC------CCcccccCCc------ee
Q 016060 208 KYGAV-LDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDV------DLGFHVDDSE------VT 274 (396)
Q Consensus 208 ~ygvv-LddiGl~~~~~~Ll~~yl~Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~------~L~~H~D~Se------vT 274 (396)
.||++ +.++..+..-..-+.+.+.|+....|. ..|.|+..++.+. .+.+|+|.+- ++
T Consensus 134 ~~G~v~~rg~~~~~~~~~~~~~~~G~~~~~~~g----------~~~~v~~~~~~~~~~yt~~~l~~HtD~~y~~~pP~~~ 203 (366)
T TIGR02409 134 DVGIAVLKGAPTKPGAVEKLGKRIGFIRETNYG----------LLFEVRLKADANNLAYTNGGLPFHTDNPYRDHPPGLQ 203 (366)
T ss_pred hccEEEEeCCCCCHHHHHHHHHHhccccccCCC----------CeEEEEecCCccccccccccccccccCCccCCCCcee
Q ss_pred EEEeccccccCcceEEcc
Q 016060 275 LNVCLGKQFTGGELFFRG 292 (396)
Q Consensus 275 LNI~Ln~dFeGGgl~F~g 292 (396)
+.-|+...=+||++.|..
T Consensus 204 ~L~c~~~~~~GG~T~~~d 221 (366)
T TIGR02409 204 LLHCLESTVEGGDSLFVD 221 (366)
T ss_pred eeeecccCCCCcceeeee
No 63
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.58 E-value=9.2 Score=34.33 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=21.4
Q ss_pred cCCccceeEEEeechhhHHHHHHhhhhccccchhhhhh
Q 016060 331 ATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFR 368 (396)
Q Consensus 331 pVTsG~RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~ 368 (396)
.+++|.+ |.|+|+=|-.=+- =.+|||-|..
T Consensus 21 ~~~n~~~-ifvlF~gskd~~t-------GqSWCPdCV~ 50 (128)
T KOG3425|consen 21 NVENGKT-IFVLFLGSKDDTT-------GQSWCPDCVA 50 (128)
T ss_pred HHhCCce-EEEEEecccCCCC-------CCcCCchHHH
Confidence 3568888 9999987653222 2399999965
No 64
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=40.53 E-value=12 Score=31.68 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=26.2
Q ss_pred hhHHHHhhhcCCCccCCCCHHHHHHHHHHHHHHhCCcchhh
Q 016060 69 PSIFSSLERYLPPPMLGLNREEKVKFMREILMKYLPQGERT 109 (396)
Q Consensus 69 ~~~~~~~e~~lp~~~~~~~~~~k~~~~~~il~~~~~~~~r~ 109 (396)
|.+|.-|| +.||-.|-.|.|++|++|+.++--.
T Consensus 18 ~~iF~FL~--------~~P~GT~~~~iR~~L~rYI~~~G~~ 50 (97)
T PRK13916 18 PQIFDFLE--------NVPRGTKTAHIREALRRYIEEIGEN 50 (97)
T ss_pred HHHHHHHH--------HCCCCCccHHHHHHHHHHHHhcCCC
Confidence 56777776 5788889999999999998765443
No 65
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=37.78 E-value=70 Score=32.67 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred ccccc-ccccChHHHHHHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCC------CCCCcccccCCc------ee
Q 016060 208 KYGAV-LDDFGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDR------DVDLGFHVDDSE------VT 274 (396)
Q Consensus 208 ~ygvv-LddiGl~~~~~~Ll~~yl~Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~------d~~L~~H~D~Se------vT 274 (396)
+||++ +.++..+..-..-+.+.+.|+-...|. ..|.|+.+++. ...+.+|+|.+- ++
T Consensus 126 ~~G~v~~~g~~~~~~~~~~~a~riG~~r~t~~g----------~~~~v~~~~~~~~~ayt~~~l~~HtD~~y~~~pp~~~ 195 (362)
T TIGR02410 126 KYGFTFVDNVPVTPEATEKLCERISIIRPTHYG----------GFWDFTSDLSKNDTAYTSLAIDMHTDGTYWDETPGLQ 195 (362)
T ss_pred hhCEEEEcCCCCCHHHHHHHHHHhccceecCCC----------CeEEEEecCCCcccccccCCccccccCCCCCCCCcce
Q ss_pred EEEeccccccCcceEEcc
Q 016060 275 LNVCLGKQFTGGELFFRG 292 (396)
Q Consensus 275 LNI~Ln~dFeGGgl~F~g 292 (396)
+.-||-..=+||++.|..
T Consensus 196 ~L~c~~~~~~GG~t~~~d 213 (362)
T TIGR02410 196 LFHCLTHDGTGGETVLVD 213 (362)
T ss_pred eEeeeecCCCCCceeeee
No 66
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=37.71 E-value=54 Score=31.33 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=27.7
Q ss_pred CCCCcccccCC------ceeEEEeccccccCcceEEcc
Q 016060 261 DVDLGFHVDDS------EVTLNVCLGKQFTGGELFFRG 292 (396)
Q Consensus 261 d~~L~~H~D~S------evTLNI~Ln~dFeGGgl~F~g 292 (396)
...+.+|+|.+ .+++.-||...-+||++.|..
T Consensus 93 ~~~l~~HtD~~y~~~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 93 NTLLPLHTDLAYHEYRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred cCCcCccccCCCCCCCCceEEEEEeccCCCCCcceeee
Confidence 45789999975 689999998878899999986
No 67
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=36.24 E-value=48 Score=32.49 Aligned_cols=71 Identities=25% Similarity=0.285 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHhhhhhhhhcccc------cCCCCcccceeEEEEeCCCCCCCcccccCCceeEEEec------ccccc
Q 016060 217 GLETMLDKLMETYIRPLSKVFFAEV------GGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCL------GKQFT 284 (396)
Q Consensus 217 Gl~~~~~~Ll~~yl~Pl~~~LfPe~------~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~SevTLNI~L------n~dFe 284 (396)
.+-..|+.|..+||-|+.+.+..+. ++.......+.||-...+ ..-.+=.+-+.+|-++.. +-+|.
T Consensus 25 algpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d--~~~~~~v~~~g~T~~~~~fl~~L~~I~f~ 102 (226)
T PF11265_consen 25 ALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTAD--CYPEPIVQRSGPTSSPQKFLQWLDAIQFS 102 (226)
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccC--CCcccceeccCCcCCHHHHHHHHHccCcC
Confidence 4558999999999999999887422 111122345555444332 244444555667766665 34899
Q ss_pred CcceE
Q 016060 285 GGELF 289 (396)
Q Consensus 285 GGgl~ 289 (396)
|||--
T Consensus 103 GGG~e 107 (226)
T PF11265_consen 103 GGGFE 107 (226)
T ss_pred CCCcc
Confidence 98854
No 68
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=32.38 E-value=62 Score=32.42 Aligned_cols=102 Identities=22% Similarity=0.350 Sum_probs=59.5
Q ss_pred hhhhhhccccCCcEEEe-cCCCHHHHHHHHHHHHhhhhhhh-cccccccccCCCCccccc---------ccc-cChHHHH
Q 016060 155 ESFRSIISEPSPGVFTF-EMLQPRFCELLLAEVENFEKWVN-EAKFRIMRPNTMNKYGAV---------LDD-FGLETML 222 (396)
Q Consensus 155 ~~l~~i~~ep~P~Vy~f-pvfspefC~~LIeE~E~f~~ws~-gs~~~i~rPn~mN~ygvv---------Ldd-iGl~~~~ 222 (396)
++...-..-|.|||... .++|.++=.+||..++.-. |.. .++-+ ..+||-- ++. .||-..-
T Consensus 61 e~~~~d~~~p~pG~~lie~Fls~~Eea~l~~~~D~~p-W~~SQSGRR------KQdyGPKvNFkk~Klkt~~F~G~P~~~ 133 (306)
T KOG3959|consen 61 ESVSTDGSIPIPGLTLIENFLSESEEAKLLNMIDTVP-WAQSQSGRR------KQDYGPKVNFKKKKLKTDTFVGMPEYA 133 (306)
T ss_pred cccccCCccccCCeeehhhhhccchHhHHHHHhccCc-hhhhccccc------ccccCCccchhhhhhccCcccCCchHH
Confidence 33333456689999999 5999999999999998753 422 12211 1234422 222 3554322
Q ss_pred HHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCC
Q 016060 223 DKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDS 271 (396)
Q Consensus 223 ~~Ll~~yl~Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S 271 (396)
+.++++ + -.||...| +....-.-..|.|.++..+.+|.||.
T Consensus 134 ~~v~rr----m--~~yp~l~g--fqp~EqCnLeYep~kgsaIdpH~DD~ 174 (306)
T KOG3959|consen 134 DMVLRR----M--SEYPVLKG--FQPFEQCNLEYEPVKGSAIDPHQDDM 174 (306)
T ss_pred HHHHHH----h--hccchhhc--cCcHHHcCcccccccCCccCccccch
Confidence 222221 1 13454433 22222334789999999999999975
No 69
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=29.02 E-value=36 Score=31.50 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=26.5
Q ss_pred CCCcccccCC------ceeEEEeccccccCcceEEccc
Q 016060 262 VDLGFHVDDS------EVTLNVCLGKQFTGGELFFRGT 293 (396)
Q Consensus 262 ~~L~~H~D~S------evTLNI~Ln~dFeGGgl~F~g~ 293 (396)
..+.+|+|.| .+.+..|+...-+||++.|...
T Consensus 95 ~~l~~HtD~~~~~~~p~~~~L~c~~~~~~GG~T~~~d~ 132 (258)
T PF02668_consen 95 GELPWHTDGSYWPYPPDYLALYCLRPAEEGGETTFADA 132 (258)
T ss_dssp SGEEEE-TTTTSTTEESEEEEEEEEEESSSSEEEEEEH
T ss_pred cccccccccCcccCCcceeEEEeeccCCCCCccccccH
Confidence 4599999998 6899999987779999999864
No 70
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=26.42 E-value=29 Score=28.19 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=9.3
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+.|..+-..
T Consensus 31 ~wC~~C~~~~p~ 42 (114)
T cd02967 31 PTCPVCKKLLPV 42 (114)
T ss_pred CCCcchHhHhHH
Confidence 799999876444
No 71
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=26.30 E-value=23 Score=29.85 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=8.3
Q ss_pred ccchhhhhhhH
Q 016060 360 SSWCGECFREK 370 (396)
Q Consensus 360 ~~~c~~c~~~~ 370 (396)
+.||+-|..+-
T Consensus 32 a~~C~~C~~~~ 42 (126)
T cd03012 32 TYCCINCLHTL 42 (126)
T ss_pred CCCCccHHHHH
Confidence 37999997653
No 72
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=25.88 E-value=5.8e+02 Score=24.24 Aligned_cols=125 Identities=19% Similarity=0.250 Sum_probs=65.4
Q ss_pred cChHHHHHHHHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCCceeEEEeccccccCcc-eEEcccc
Q 016060 216 FGLETMLDKLMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGE-LFFRGTR 294 (396)
Q Consensus 216 iGl~~~~~~Ll~~yl~Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGg-l~F~g~~ 294 (396)
+.|.+++..=.. .|-|.++...+-....|.|..-.+......+|.+.++=.+-+- +|.- +.+.+.
T Consensus 7 ~n~~~Wieen~~--------~l~pPv~n~~l~~~~d~~VmvvgGpn~r~d~H~~~tdE~Fyql-----eG~~~l~v~d~- 72 (177)
T PRK13264 7 FNLHKWIEEHRH--------LLKPPVGNKQIWQDSDFIVMVVGGPNARTDFHYDPGEEFFYQL-----EGDMYLKVQED- 72 (177)
T ss_pred ccHHHHHHhhHH--------HhCCCCCCeeeEcCCCEEEEEEccCCcccccccCCCceEEEEE-----CCeEEEEEEcC-
Confidence 566665544332 2334454443322224556555555568999998876444332 2331 112110
Q ss_pred ccccccCCCCccceeeecCCCceEEEecCCCCcCCccCCccceeEEEeechhhHHHHHHhhhhccccchhhhhhhHHH
Q 016060 295 CEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKKE 372 (396)
Q Consensus 295 c~~hv~~~~~~~e~~~y~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~~ 372 (396)
.+..++...+|..++.|+...|.-.. ..|+.-.+|==-|.. .+ ...|.-.|..|+..--|
T Consensus 73 -----------g~~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~LviE~~r~~--~~----~d~~~wyc~~c~~~~~e 132 (177)
T PRK13264 73 -----------GKRRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVIERKRPE--GE----LDGFQWYCDECNHKVHE 132 (177)
T ss_pred -----------CceeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEEEeCCCC--CC----ccceEEECCCCCCeEEE
Confidence 01123457899999999999998866 345443333222211 11 23455568888664433
No 73
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=25.80 E-value=25 Score=27.55 Aligned_cols=12 Identities=17% Similarity=0.672 Sum_probs=9.6
Q ss_pred cccchhhhhhhH
Q 016060 359 FSSWCGECFREK 370 (396)
Q Consensus 359 f~~~c~~c~~~~ 370 (396)
|+.|||-|..-.
T Consensus 6 ~a~~C~~C~~~~ 17 (76)
T TIGR00412 6 YGTGCANCQMTE 17 (76)
T ss_pred ECCCCcCHHHHH
Confidence 579999997753
No 74
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=24.72 E-value=51 Score=25.02 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=9.9
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+.|..-+..
T Consensus 8 ~~~C~~C~~~~~~ 20 (82)
T TIGR00411 8 SPTCPYCPAAKRV 20 (82)
T ss_pred CCCCcchHHHHHH
Confidence 5899999765554
No 75
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=24.52 E-value=56 Score=27.83 Aligned_cols=24 Identities=29% Similarity=0.796 Sum_probs=16.3
Q ss_pred CccceeEEEeechhhHHHHHHhhhhccccchhhhhhhHH
Q 016060 333 TSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREKK 371 (396)
Q Consensus 333 TsG~RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~~~ 371 (396)
.+|...++..|.. .|||-|..+-.
T Consensus 26 ~~gk~~vv~f~~~---------------~~Cp~C~~~~p 49 (146)
T PF08534_consen 26 FKGKPVVVNFWAS---------------AWCPPCRKELP 49 (146)
T ss_dssp GTTSEEEEEEEST---------------TTSHHHHHHHH
T ss_pred hCCCeEEEEEEcc---------------CCCCcchhhhh
Confidence 5566666666642 39999987665
No 76
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=23.98 E-value=1.8e+02 Score=23.31 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=20.9
Q ss_pred ecCCCceEEEecCCCCcCCccCCc-cceeEEEee
Q 016060 311 YSHVPGRAVLHRGRHRHGARATTS-GHRVNLLLW 343 (396)
Q Consensus 311 y~~~~G~AlLHpGrh~HeglpVTs-G~RynLV~W 343 (396)
|...+|..++.+....|...+... +.++..|.+
T Consensus 43 ~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 43 YPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp EEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred EEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 456889999999999999887776 455555555
No 77
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=23.89 E-value=30 Score=27.25 Aligned_cols=12 Identities=42% Similarity=1.190 Sum_probs=8.2
Q ss_pred cccchhhhhhhH
Q 016060 359 FSSWCGECFREK 370 (396)
Q Consensus 359 f~~~c~~c~~~~ 370 (396)
+++||+.|...-
T Consensus 9 wa~~c~~c~~~~ 20 (95)
T PF13905_consen 9 WASWCPPCKKEL 20 (95)
T ss_dssp E-TTSHHHHHHH
T ss_pred ECCCCHHHHHHH
Confidence 358999996643
No 78
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=22.74 E-value=39 Score=26.62 Aligned_cols=13 Identities=0% Similarity=-0.335 Sum_probs=9.7
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+.|......
T Consensus 21 a~wC~~C~~~~~~ 33 (96)
T cd02956 21 APRSPPSKELLPL 33 (96)
T ss_pred CCCChHHHHHHHH
Confidence 4899999865544
No 79
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=21.70 E-value=36 Score=30.86 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=9.0
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
+||+-|..+.-.
T Consensus 60 sWCppCr~e~P~ 71 (153)
T TIGR02738 60 STCPYCHQFAPV 71 (153)
T ss_pred CCChhHHHHHHH
Confidence 899999765433
No 80
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=21.45 E-value=35 Score=25.63 Aligned_cols=11 Identities=36% Similarity=1.210 Sum_probs=9.0
Q ss_pred cccchhhhhhh
Q 016060 359 FSSWCGECFRE 369 (396)
Q Consensus 359 f~~~c~~c~~~ 369 (396)
|+.|||-|...
T Consensus 40 ~~~~C~~C~~~ 50 (127)
T COG0526 40 WAPWCPPCRAE 50 (127)
T ss_pred EcCcCHHHHhh
Confidence 56999999765
No 81
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=21.35 E-value=38 Score=27.50 Aligned_cols=13 Identities=31% Similarity=1.050 Sum_probs=9.8
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
++||+-|......
T Consensus 24 a~wC~~C~~~~p~ 36 (104)
T cd03000 24 APWCGHCKKLEPV 36 (104)
T ss_pred CCCCHHHHhhChH
Confidence 3899999866544
No 82
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=21.16 E-value=37 Score=30.68 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=8.8
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
+|||-|..+.-
T Consensus 35 sWCppCr~e~P 45 (146)
T cd03008 35 VVSPQCQLFAP 45 (146)
T ss_pred CCChhHHHHHH
Confidence 89999977553
No 83
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=20.76 E-value=3.5e+02 Score=24.60 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=38.8
Q ss_pred eeEEEEeCCCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCCcCCc
Q 016060 251 GFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGAR 330 (396)
Q Consensus 251 ~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGrh~Hegl 330 (396)
.+++.|.|+....-..|++.-|+-+-+. |.+.+.= +. -.+...+|.++.+++...|.-.
T Consensus 109 ~~~~~~~pg~~~~~~~~h~~~E~~~Vl~-------G~~~~~~-~~-------------~~~~l~~Gd~~~~~~~~~H~~~ 167 (185)
T PRK09943 109 MIFETYQPGTTTGERIKHQGEEIGTVLE-------GEIVLTI-NG-------------QDYHLVAGQSYAINTGIPHSFS 167 (185)
T ss_pred EEEEEccCCCCcccccccCCcEEEEEEE-------eEEEEEE-CC-------------EEEEecCCCEEEEcCCCCeeee
Confidence 3467888876544345666656555442 3333321 11 1246789999999999999877
Q ss_pred cCC
Q 016060 331 ATT 333 (396)
Q Consensus 331 pVT 333 (396)
...
T Consensus 168 n~~ 170 (185)
T PRK09943 168 NTS 170 (185)
T ss_pred CCC
Confidence 754
No 84
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=20.53 E-value=44 Score=27.54 Aligned_cols=13 Identities=23% Similarity=0.744 Sum_probs=10.4
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|..-+..
T Consensus 30 a~wC~~C~~~~~~ 42 (109)
T cd02993 30 APWCPFCQAMEAS 42 (109)
T ss_pred CCCCHHHHHHhHH
Confidence 4899999887665
No 85
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=20.28 E-value=3.5e+02 Score=28.03 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=44.5
Q ss_pred eeEEEEeCCCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCCcCCc
Q 016060 251 GFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGAR 330 (396)
Q Consensus 251 ~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGrh~Hegl 330 (396)
...+++.++.-..+-+| .+.|+.+-+. |.+++.=.+. ..+.+.....+|..+++|.+..|.-.
T Consensus 69 ~~~~~l~pG~~~~~HwH-~~~E~~yVl~-------G~~~v~~~d~---------~g~~~~~~L~~GD~~~fP~g~~H~~~ 131 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWH-KEAEWAYVLY-------GSCRITAVDE---------NGRNYIDDVGAGDLWYFPPGIPHSLQ 131 (367)
T ss_pred ceEEEEcCCCCCCcccC-CCceEEEEEe-------eEEEEEEEcC---------CCcEEEeEECCCCEEEECCCCeEEEE
Confidence 34577888776666677 4567544442 3332221110 01223335789999999999999988
Q ss_pred cCCccceeEE
Q 016060 331 ATTSGHRVNL 340 (396)
Q Consensus 331 pVTsG~RynL 340 (396)
.+..+.++++
T Consensus 132 n~~~~~~~l~ 141 (367)
T TIGR03404 132 GLDEGCEFLL 141 (367)
T ss_pred ECCCCeEEEE
Confidence 8866766444
No 86
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=20.19 E-value=1.6e+02 Score=29.13 Aligned_cols=59 Identities=14% Similarity=0.242 Sum_probs=32.5
Q ss_pred EEEecCCCHHHHHHHHHHHHhhhh--hhhcccc---cccccCCCCccccc-cccc-ChHHHHHHHHH
Q 016060 168 VFTFEMLQPRFCELLLAEVENFEK--WVNEAKF---RIMRPNTMNKYGAV-LDDF-GLETMLDKLME 227 (396)
Q Consensus 168 Vy~fpvfspefC~~LIeE~E~f~~--ws~gs~~---~i~rPn~mN~ygvv-Lddi-Gl~~~~~~Ll~ 227 (396)
+.|.|+++.+..+.|++.+.+-+. |-. ..+ +...+..|++-|.+ +|-. +|+..+..++.
T Consensus 161 ~iWYPi~~~~~~~~~~~~l~~~~~~~~l~-~El~v~~~~~~~gm~GSGm~iiNPPw~l~~~l~~~l~ 226 (245)
T PF04378_consen 161 AIWYPIKDRERVDRFLRALKALGIKKVLR-AELRVRPPDSPRGMNGSGMLIINPPWTLDEELEEILP 226 (245)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH-SSE-EE-EEEE---SS---S--EEEEEEES--TTHHHHHHHHHH
T ss_pred EEEeecccHHHHHHHHHHHHhcCCCCeEE-EEEEecCCCCcCceecceEEEEcCCccHHHHHHHHHH
Confidence 456699999999999998886432 100 111 12334568888876 4443 77766665554
No 87
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=20.09 E-value=2e+02 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=23.4
Q ss_pred cccccCCc------eeEEEeccccccCcceEEcc
Q 016060 265 GFHVDDSE------VTLNVCLGKQFTGGELFFRG 292 (396)
Q Consensus 265 ~~H~D~Se------vTLNI~Ln~dFeGGgl~F~g 292 (396)
.+|.|.|- +++.-|+-..-+||+|.|..
T Consensus 95 ~wHtD~sy~~~pp~~~~L~~~~~p~~GG~T~fad 128 (277)
T PRK09553 95 NWHTDVTFIETPPLGAILAAKQLPSTGGDTLWAS 128 (277)
T ss_pred CCeecccCeeCCCceeEEEEEecCCCCCccHhhh
Confidence 59999874 78889997667899999975
No 88
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=20.05 E-value=48 Score=27.65 Aligned_cols=12 Identities=42% Similarity=1.063 Sum_probs=9.0
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|.....+
T Consensus 35 ~~C~~C~~~~~~ 46 (127)
T cd03010 35 SWCAPCREEHPV 46 (127)
T ss_pred CcCHHHHHHHHH
Confidence 799999865433
Done!