Query 016060
Match_columns 396
No_of_seqs 200 out of 303
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dkq_A PKHD-type hydroxylase S 99.7 3.1E-17 1E-21 156.2 10.4 160 166-347 19-196 (243)
2 2jig_A Prolyl-4 hydroxylase; h 99.7 7E-17 2.4E-21 149.4 10.3 174 165-350 19-221 (224)
3 3itq_A Prolyl 4-hydroxylase, a 99.7 8.5E-17 2.9E-21 150.5 10.9 156 165-349 38-215 (216)
4 2hbt_A EGL nine homolog 1; pro 99.2 1.8E-10 6.2E-15 109.2 14.9 168 166-352 26-219 (247)
5 3kt7_A PKHD-type hydroxylase T 98.0 9.3E-05 3.2E-09 78.7 15.0 198 138-348 13-230 (633)
6 2rg4_A Uncharacterized protein 97.6 0.00059 2E-08 63.2 11.8 93 250-344 104-205 (216)
7 2rdq_A 1-deoxypentalenic acid 97.6 0.0013 4.6E-08 61.4 14.3 87 261-347 134-253 (288)
8 2a1x_A Phytanoyl-COA dioxygena 97.5 0.0013 4.5E-08 62.4 13.2 84 264-347 142-255 (308)
9 2opw_A Phyhd1 protein; double- 97.3 0.0036 1.2E-07 58.6 13.7 88 258-345 147-265 (291)
10 2fct_A Syringomycin biosynthes 97.1 0.0093 3.2E-07 56.5 15.0 42 307-348 218-262 (313)
11 3gja_A CYTC3; halogenase, beta 96.9 0.0068 2.3E-07 58.7 11.7 41 307-347 220-263 (319)
12 3emr_A ECTD; double stranded b 96.6 0.0076 2.6E-07 58.2 9.4 174 167-346 47-268 (310)
13 3nnf_A CURA; non-HAEM Fe(II)/a 94.7 0.089 3.1E-06 52.1 8.6 170 167-345 41-273 (344)
14 2iuw_A Alkylated repair protei 94.7 0.14 4.6E-06 48.0 9.4 160 166-343 40-227 (238)
15 3tht_A Alkylated DNA repair pr 94.6 0.077 2.6E-06 52.7 7.9 143 162-333 107-274 (345)
16 3s57_A Alpha-ketoglutarate-dep 93.6 0.44 1.5E-05 43.6 10.4 158 167-342 12-199 (204)
17 3i3q_A Alpha-ketoglutarate-dep 89.8 0.94 3.2E-05 41.9 8.0 80 250-343 106-200 (211)
18 3pl0_A Uncharacterized protein 86.9 0.47 1.6E-05 45.3 4.0 76 263-348 162-249 (254)
19 1gp6_A Leucoanthocyanidin diox 80.8 3.2 0.00011 40.7 7.1 79 253-347 214-308 (356)
20 1w9y_A 1-aminocyclopropane-1-c 79.2 2.6 9E-05 40.7 5.9 80 253-347 159-254 (319)
21 3on7_A Oxidoreductase, iron/as 78.8 3.1 0.00011 39.4 6.2 80 253-347 154-255 (280)
22 1dcs_A Deacetoxycephalosporin 77.7 3.4 0.00011 39.7 6.1 81 253-347 161-268 (311)
23 3oox_A Putative 2OG-Fe(II) oxy 76.0 3.9 0.00013 39.1 6.0 80 253-347 173-272 (312)
24 1odm_A Isopenicillin N synthas 73.9 4.1 0.00014 39.4 5.6 70 261-347 208-289 (331)
25 3rcq_A Aspartyl/asparaginyl be 70.9 5.3 0.00018 36.7 5.3 78 251-344 104-181 (197)
26 1r26_A Thioredoxin; redox-acti 66.6 2.3 7.7E-05 34.6 1.7 50 323-372 3-58 (125)
27 1oih_A Putative alkylsulfatase 40.1 71 0.0024 29.7 7.5 32 261-292 102-139 (301)
28 1ilo_A Conserved hypothetical 38.8 14 0.00049 26.2 1.9 13 359-371 7-19 (77)
29 2ozj_A Cupin 2, conserved barr 37.9 82 0.0028 24.3 6.5 34 311-345 78-111 (114)
30 1nho_A Probable thioredoxin; b 31.4 13 0.00045 26.7 0.7 13 360-372 10-22 (85)
31 3die_A Thioredoxin, TRX; elect 31.3 15 0.0005 27.4 0.9 12 361-372 29-40 (106)
32 2vim_A Thioredoxin, TRX; thior 31.0 14 0.00049 27.4 0.8 13 360-372 28-40 (104)
33 1nx8_A CARC, carbapenem syntha 30.7 22 0.00077 32.5 2.3 32 262-293 96-135 (273)
34 4i4a_A Similar to unknown prot 29.3 1.2E+02 0.0041 23.8 6.2 39 311-350 74-113 (128)
35 1fb6_A Thioredoxin M; electron 29.0 16 0.00056 27.1 0.8 12 361-372 28-39 (105)
36 1otj_A Alpha-ketoglutarate-dep 28.8 1.8E+02 0.0063 26.5 8.2 42 251-292 82-130 (283)
37 1fo5_A Thioredoxin; disulfide 28.4 15 0.00052 26.3 0.5 13 360-372 11-23 (85)
38 3kp8_A Vkorc1/thioredoxin doma 28.0 17 0.00059 28.8 0.8 13 359-371 20-32 (106)
39 2voc_A Thioredoxin; electron t 28.0 21 0.00071 27.5 1.3 12 361-372 27-38 (112)
40 2pu9_C TRX-F, thioredoxin F-ty 28.0 17 0.00059 27.7 0.8 13 360-372 33-45 (111)
41 3tco_A Thioredoxin (TRXA-1); d 27.6 27 0.00092 26.0 1.9 12 360-371 30-41 (109)
42 3uvt_A Thioredoxin domain-cont 27.4 24 0.00081 26.5 1.5 11 360-370 30-40 (111)
43 2e0q_A Thioredoxin; electron t 27.3 18 0.00063 26.5 0.8 11 361-371 26-36 (104)
44 1faa_A Thioredoxin F; electron 27.2 18 0.00062 28.2 0.8 13 360-372 46-58 (124)
45 2djj_A PDI, protein disulfide- 26.4 20 0.00067 27.7 0.9 12 361-372 35-46 (121)
46 1nsw_A Thioredoxin, TRX; therm 26.3 19 0.00066 26.8 0.8 12 361-372 27-38 (105)
47 3m9j_A Thioredoxin; oxidoreduc 26.0 26 0.0009 26.0 1.5 13 360-372 29-41 (105)
48 3d6i_A Monothiol glutaredoxin- 25.9 20 0.00067 27.4 0.8 12 360-371 30-41 (112)
49 2trx_A Thioredoxin; electron t 25.7 20 0.00069 26.9 0.8 12 361-372 30-41 (108)
50 1ep7_A Thioredoxin CH1, H-type 25.7 20 0.00069 27.1 0.8 13 360-372 33-45 (112)
51 2yzu_A Thioredoxin; redox prot 25.5 21 0.00071 26.5 0.8 12 361-372 28-39 (109)
52 1xwb_A Thioredoxin; dimerizati 25.3 21 0.00071 26.6 0.8 13 360-372 29-41 (106)
53 2xc2_A Thioredoxinn; oxidoredu 25.3 21 0.00071 27.6 0.8 13 360-372 42-54 (117)
54 3ul3_B Thioredoxin, thioredoxi 25.2 38 0.0013 26.7 2.4 12 361-372 52-63 (128)
55 1dby_A Chloroplast thioredoxin 25.2 21 0.00072 26.7 0.8 12 361-372 29-40 (107)
56 1t00_A Thioredoxin, TRX; redox 25.1 21 0.00072 27.1 0.8 12 361-372 33-44 (112)
57 1zzo_A RV1677; thioredoxin fol 25.0 21 0.00072 27.5 0.8 11 361-371 35-45 (136)
58 1mek_A Protein disulfide isome 25.0 20 0.00067 27.2 0.6 12 361-372 34-45 (120)
59 2kuc_A Putative disulphide-iso 24.7 22 0.00075 27.8 0.9 13 360-372 36-48 (130)
60 1thx_A Thioredoxin, thioredoxi 24.5 23 0.00077 26.8 0.9 12 361-372 35-46 (115)
61 4euy_A Uncharacterized protein 24.3 29 0.00098 26.3 1.5 11 361-371 28-38 (105)
62 3f3q_A Thioredoxin-1; His TAG, 24.1 34 0.0012 26.3 1.9 12 361-372 34-45 (109)
63 1syr_A Thioredoxin; SGPP, stru 24.0 23 0.00077 27.2 0.8 13 360-372 35-47 (112)
64 2k8s_A Thioredoxin; dimer, str 23.9 21 0.00072 26.1 0.6 12 360-371 9-20 (80)
65 1zma_A Bacterocin transport ac 23.7 23 0.00079 27.4 0.8 12 360-371 38-49 (118)
66 1lu4_A Soluble secreted antige 23.5 23 0.0008 27.4 0.8 11 361-371 34-44 (136)
67 2dml_A Protein disulfide-isome 23.4 26 0.00087 27.4 1.0 12 361-372 45-56 (130)
68 1x5e_A Thioredoxin domain cont 23.3 23 0.0008 27.7 0.8 12 361-372 32-43 (126)
69 1w4v_A Thioredoxin, mitochondr 23.1 24 0.00082 27.5 0.8 11 361-371 41-51 (119)
70 3gnj_A Thioredoxin domain prot 23.1 32 0.0011 25.8 1.5 11 361-371 32-42 (111)
71 2i4a_A Thioredoxin; acidophIle 22.9 43 0.0015 24.8 2.3 12 361-372 30-41 (107)
72 3qfa_C Thioredoxin; protein-pr 22.9 24 0.00083 27.5 0.8 12 360-371 40-51 (116)
73 2f51_A Thioredoxin; electron t 22.9 24 0.00083 27.7 0.8 13 360-372 32-44 (118)
74 1gh2_A Thioredoxin-like protei 22.9 37 0.0013 25.6 1.9 13 360-372 30-42 (107)
75 2l6c_A Thioredoxin; oxidoreduc 22.7 25 0.00084 27.1 0.8 11 361-371 29-39 (110)
76 3or5_A Thiol:disulfide interch 22.7 25 0.00085 28.4 0.9 12 361-372 44-55 (165)
77 1yhf_A Hypothetical protein SP 22.3 1.5E+02 0.0051 22.6 5.4 31 312-343 81-111 (115)
78 3fk8_A Disulphide isomerase; A 22.2 26 0.00088 27.7 0.8 13 360-372 38-50 (133)
79 4evm_A Thioredoxin family prot 22.2 26 0.0009 26.7 0.9 11 361-371 32-42 (138)
80 2oe3_A Thioredoxin-3; electron 22.1 25 0.00085 27.5 0.7 12 361-372 40-51 (114)
81 2opk_A Hypothetical protein; p 22.0 2.2E+02 0.0074 22.4 6.5 33 311-343 75-109 (112)
82 3hxs_A Thioredoxin, TRXP; elec 22.0 27 0.00091 27.8 0.9 11 361-371 61-71 (141)
83 2j23_A Thioredoxin; immune pro 21.9 26 0.0009 27.5 0.8 11 361-371 43-53 (121)
84 1ti3_A Thioredoxin H, PTTRXH1; 21.9 26 0.0009 26.4 0.8 12 360-371 35-46 (113)
85 1kng_A Thiol:disulfide interch 21.9 26 0.0009 28.0 0.8 10 361-370 52-61 (156)
86 2l5l_A Thioredoxin; structural 21.8 26 0.0009 28.1 0.9 12 361-372 48-59 (136)
87 2fwh_A Thiol:disulfide interch 21.7 27 0.00091 28.0 0.8 11 360-370 40-50 (134)
88 3erw_A Sporulation thiol-disul 21.7 27 0.00091 27.3 0.8 11 361-371 44-54 (145)
89 2l57_A Uncharacterized protein 21.7 27 0.00091 27.3 0.8 12 361-372 36-47 (126)
90 3aps_A DNAJ homolog subfamily 21.7 42 0.0014 25.8 2.0 12 361-372 31-42 (122)
91 2lja_A Putative thiol-disulfid 21.5 29 0.00099 27.7 1.0 11 361-371 40-50 (152)
92 2vlu_A Thioredoxin, thioredoxi 21.4 27 0.00094 26.9 0.8 12 360-371 43-54 (122)
93 2dj3_A Protein disulfide-isome 21.3 28 0.00094 27.4 0.8 12 361-372 35-46 (133)
94 2e7p_A Glutaredoxin; thioredox 21.2 26 0.0009 27.0 0.7 11 361-371 28-38 (116)
95 3hcz_A Possible thiol-disulfid 21.2 28 0.00097 27.3 0.9 12 361-372 41-52 (148)
96 2yj7_A LPBCA thioredoxin; oxid 26.6 20 0.00069 26.4 0.0 11 361-371 29-39 (106)
97 2b5x_A YKUV protein, TRXY; thi 21.0 28 0.00096 27.3 0.8 11 361-371 39-49 (148)
98 3fkf_A Thiol-disulfide oxidore 20.6 30 0.001 27.2 1.0 11 361-371 43-53 (148)
99 1xfl_A Thioredoxin H1; AT3G510 20.6 43 0.0015 26.5 1.9 14 359-372 46-59 (124)
100 2vm1_A Thioredoxin, thioredoxi 20.5 44 0.0015 25.3 1.9 13 360-372 37-49 (118)
101 3raz_A Thioredoxin-related pro 20.5 29 0.001 27.9 0.8 12 361-372 34-45 (151)
102 1xvw_A Hypothetical protein RV 20.5 46 0.0016 26.9 2.1 22 334-369 34-55 (160)
103 1x5d_A Protein disulfide-isome 20.5 50 0.0017 25.6 2.2 12 361-372 35-46 (133)
104 2dj1_A Protein disulfide-isome 20.3 28 0.00097 27.5 0.7 12 361-372 44-55 (140)
105 3ewl_A Uncharacterized conserv 20.2 25 0.00087 27.7 0.4 10 361-370 37-46 (142)
106 3dml_A Putative uncharacterize 20.1 45 0.0015 27.7 1.9 30 325-370 8-37 (116)
No 1
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=99.70 E-value=3.1e-17 Score=156.23 Aligned_cols=160 Identities=16% Similarity=0.299 Sum_probs=108.8
Q ss_pred CcEEEec-CCCHHHHHHHHHHHHhhhhhhhcccc-cccccCCCCcccccccccChH-HHHHHHHHHHhhhhhhhhccccc
Q 016060 166 PGVFTFE-MLQPRFCELLLAEVENFEKWVNEAKF-RIMRPNTMNKYGAVLDDFGLE-TMLDKLMETYIRPLSKVFFAEVG 242 (396)
Q Consensus 166 P~Vy~fp-vfspefC~~LIeE~E~f~~ws~gs~~-~i~rPn~mN~ygvvLddiGl~-~~~~~Ll~~yl~Pl~~~LfPe~~ 242 (396)
+.++.+| |||+++|++||+.++.- .|..+... ...-....||..+..++. +. .+++.+.. .+.. - |.+.
T Consensus 19 ~~i~~i~dvLs~~Ec~~li~~~e~~-~~~dg~~t~g~~~~~vr~n~~l~~d~~-~~~~l~~~i~~-~l~~----~-~~f~ 90 (243)
T 3dkq_A 19 GMLIEIPNVFSKQEVSHLREQLDAR-RWIDGNQTSGAMATTRKRNQQLDKDDP-VAVALGQQIMD-RLLA----H-PQFV 90 (243)
T ss_dssp TTBEEECCSSCHHHHHHHHHHHHTS-CCEEECCCSSBSSCCCEEEEECCTTCH-HHHHHHHHHHH-HHHT----C-HHHH
T ss_pred CCEEEECCCCCHHHHHHHHHHHhhC-CCccCcccCCCccccceeeeEECCCCH-HHHHHHHHHHH-HHcc----C-cchh
Confidence 5677775 99999999999999852 35432211 111123345544544443 32 33433332 2211 0 1111
Q ss_pred CCCCc--ccceeEEEEeCCCCCCCcccccCC-----------ceeEEEeccc--cccCcceEEccccccccccCCCCccc
Q 016060 243 GSTLD--SHHGFVVEYGKDRDVDLGFHVDDS-----------EVTLNVCLGK--QFTGGELFFRGTRCEKHVNTGSQTEE 307 (396)
Q Consensus 243 g~~Ld--sh~~FVVrY~~~~d~~L~~H~D~S-----------evTLNI~Ln~--dFeGGgl~F~g~~c~~hv~~~~~~~e 307 (396)
...|. .....+.+|.+|+ .+++|+|.+ .+|+.++||+ +|+||+|.|.....
T Consensus 91 ~~~L~~~~e~~~~~rY~~G~--~y~~H~D~~~~~~~~~~~~r~~T~~lYLndp~~~~GGetvf~~~~~------------ 156 (243)
T 3dkq_A 91 SAALPLQFYPPLFNRYQGGE--TFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYG------------ 156 (243)
T ss_dssp HHHCEEEEEEEEEEEECTTC--EEEEECBCSEEEETTEEEECCEEEEEECSCGGGEEECCEEEEETTE------------
T ss_pred hcccccccccceEEEECCCC--eeccCCCCCCCCCCCccccceEEEEEEeCCCCCCCCceEEEeeCCC------------
Confidence 11111 2234579999976 999999963 5899999998 99999999996432
Q ss_pred eeeecCCCceEEEecCCCCcCCccCCccceeEEEeechhh
Q 016060 308 IFDYSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 308 ~~~y~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~rss 347 (396)
...+.|++|.+|+|++..+|+|.|||+|+||+++.|++|.
T Consensus 157 ~~~V~P~~G~~v~F~s~~lH~v~pV~~G~R~~~~~Wi~s~ 196 (243)
T 3dkq_A 157 QQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFMWLQSM 196 (243)
T ss_dssp EEEECCCTTCEEEEETTSEEEECCEEEECEEEEEEEEEES
T ss_pred cEEEecCCCEEEEECCCCeEcCccccccCEEEEEEehhhc
Confidence 1346899999999999999999999999999999999975
No 2
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=99.68 E-value=7e-17 Score=149.44 Aligned_cols=174 Identities=15% Similarity=0.210 Sum_probs=110.3
Q ss_pred CCcEEEec-CCCHHHHHHHHHHHHh-hhh--hhhcccccccccCCCCcccccccccChHHHHHHHHHHHhhhhhhhhccc
Q 016060 165 SPGVFTFE-MLQPRFCELLLAEVEN-FEK--WVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAE 240 (396)
Q Consensus 165 ~P~Vy~fp-vfspefC~~LIeE~E~-f~~--ws~gs~~~i~rPn~mN~ygvvLddiGl~~~~~~Ll~~yl~Pl~~~LfPe 240 (396)
.|.|+.++ |||+++|+.||+.++. +.. |..+..-.....+.++...+.+++- -+.....+. +.|..++. .|
T Consensus 19 ~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~-~~~~~~~i~-~ri~~~~g--l~- 93 (224)
T 2jig_A 19 SPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKG-EDSVISKIE-KRVAQVTM--IP- 93 (224)
T ss_dssp TTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTT-CSHHHHHHH-HHHHHHHT--CC-
T ss_pred CCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCC-CCHHHHHHH-HHHHHHhC--CC-
Confidence 58898885 9999999999999985 222 2111100001123344444445431 122222222 23322221 11
Q ss_pred ccCCCCcccceeEEEEeCCCCCCCcccccCC--------------ceeEEEeccccccCcceEEcccccccc--ccCCCC
Q 016060 241 VGGSTLDSHHGFVVEYGKDRDVDLGFHVDDS--------------EVTLNVCLGKQFTGGELFFRGTRCEKH--VNTGSQ 304 (396)
Q Consensus 241 ~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S--------------evTLNI~Ln~dFeGGgl~F~g~~c~~h--v~~~~~ 304 (396)
.. ... ..-|++|.+++ ++.+|+|.. .+|+.|+||+..+||+|.|........ .-++.
T Consensus 94 ~~---~~e-~~qv~rY~~G~--~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~c- 166 (224)
T 2jig_A 94 LE---NHE-GLQVLHYHDGQ--KYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGWSEC- 166 (224)
T ss_dssp GG---GBC-CCEEEEEETTC--CEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSSCCCSTTSCTT-
T ss_pred cc---ccc-ceEEEecCCCc--cccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCccccccccccccc-
Confidence 00 111 23479999976 899999942 389999999999999999986530000 00000
Q ss_pred ccceeeecCCCceEEEecC---------CCCcCCccCCccceeEEEeechhhHHH
Q 016060 305 TEEIFDYSHVPGRAVLHRG---------RHRHGARATTSGHRVNLLLWCRSSVFR 350 (396)
Q Consensus 305 ~~e~~~y~~~~G~AlLHpG---------rh~HeglpVTsG~RynLV~W~rss~~R 350 (396)
.+..+.+.|++|.||+|+. +.+|+|.||++|+||++..|+++..||
T Consensus 167 ~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~~ 221 (224)
T 2jig_A 167 AKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG 221 (224)
T ss_dssp GGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCCC
T ss_pred ccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCcC
Confidence 0123578999999999986 799999999999999999999987665
No 3
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=99.68 E-value=8.5e-17 Score=150.54 Aligned_cols=156 Identities=21% Similarity=0.278 Sum_probs=107.0
Q ss_pred CCcEEEec-CCCHHHHHHHHHHHHh-hhhhhhcccccccccCCCCcccccccccChHHHHHHHHHHHhhhhhhhhccccc
Q 016060 165 SPGVFTFE-MLQPRFCELLLAEVEN-FEKWVNEAKFRIMRPNTMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFAEVG 242 (396)
Q Consensus 165 ~P~Vy~fp-vfspefC~~LIeE~E~-f~~ws~gs~~~i~rPn~mN~ygvvLddiGl~~~~~~Ll~~yl~Pl~~~LfPe~~ 242 (396)
.|.|+.++ |||+++|+.||+..+. +....-+.+ ......++..++-|++ +.....+. +.|..++.. | ..
T Consensus 38 ~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~--~~~~~~RtS~~~wl~~---~~~v~~i~-~Ri~~~~gl--~-~~ 108 (216)
T 3itq_A 38 EPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS--RDVNDIRTSSGAFLDD---NELTAKIE-KRISSIMNV--P-AS 108 (216)
T ss_dssp TTTEEEEESCSCHHHHHHHHHHHHHHHC----------CCCCGGGTTCEECCC---CHHHHHHH-HHHHHHHTS--C-GG
T ss_pred CCCEEEECCcCCHHHHHHHHHHhhcccccceeccC--CccCCcEeeeeEEeCC---cHHHHHHH-HHHHHhcCc--e-ec
Confidence 69999995 9999999999999885 433110011 0111223334555666 22222222 233333211 1 00
Q ss_pred CCCCcccceeEEEEeCCCCCCCcccccCC-----------ceeEEEeccccccCcceEEccccccccccCCCCccceeee
Q 016060 243 GSTLDSHHGFVVEYGKDRDVDLGFHVDDS-----------EVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDY 311 (396)
Q Consensus 243 g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S-----------evTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y 311 (396)
..-...+++|.+++ ++.+|+|.. .+|+.++||+.++||+|.|...+. .+
T Consensus 109 ----~~E~lqv~~Y~~G~--~y~~H~D~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~--------------~V 168 (216)
T 3itq_A 109 ----HGEGLHILNYEVDQ--QYKAHYDYFAEHSRSAANNRISTLVMYLNDVEEGGETFFPKLNL--------------SV 168 (216)
T ss_dssp ----GBCCCEEEEECBTC--CEEEECSSCCTTSGGGGGCEEEEEEEECSCCSEECCEEETTTTE--------------EE
T ss_pred ----cccceeEEEeCCCC--ccccccCCCcCCCcccCCceEEEEEEecccCCcCceeEecCCCC--------------EE
Confidence 11123489999976 899999954 289999999999999999987542 35
Q ss_pred cCCCceEEEecC---------CCCcCCccCCccceeEEEeechhhHH
Q 016060 312 SHVPGRAVLHRG---------RHRHGARATTSGHRVNLLLWCRSSVF 349 (396)
Q Consensus 312 ~~~~G~AlLHpG---------rh~HeglpVTsG~RynLV~W~rss~~ 349 (396)
.|++|.||+|+. +.+|+|.||++|+||++..|+|...|
T Consensus 169 ~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~v~~~W~~~~~~ 215 (216)
T 3itq_A 169 HPRKGMAVYFEYFYQDQSLNELTLHGGAPVTKGEKWIATQWVRRGTY 215 (216)
T ss_dssp CCCTTCEEEEECCCSSHHHHHTTCEEECCEEESCEEEEEEEEESSCC
T ss_pred ecCCCeEEEEeccCCCCCCCCccccccceeccccEEEEEeeEecCCc
Confidence 799999999998 79999999999999999999997654
No 4
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=99.21 E-value=1.8e-10 Score=109.22 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=104.8
Q ss_pred CcEEEe-cCCCHHHHHHHHHHHHhhhh---hhhccccccccc------CCCCccccccccc--ChHH--HHHHHHHHHhh
Q 016060 166 PGVFTF-EMLQPRFCELLLAEVENFEK---WVNEAKFRIMRP------NTMNKYGAVLDDF--GLET--MLDKLMETYIR 231 (396)
Q Consensus 166 P~Vy~f-pvfspefC~~LIeE~E~f~~---ws~gs~~~i~rP------n~mN~ygvvLddi--Gl~~--~~~~Ll~~yl~ 231 (396)
++++.+ .+|++++|+.|+++++.... +.. ..+.+. ...+..-.-++.- ..+. .+...++..+.
T Consensus 26 ~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~---a~i~~~~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~ 102 (247)
T 2hbt_A 26 HGICVVDDFLGKETGQQIGDEVRALHDTGKFTD---GQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102 (247)
T ss_dssp TSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCS---CCEEECCSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhhhhcCCccc---cccccccccccccccccceeeecccccchhHHHHHHHHHHHHHH
Confidence 577777 59999999999999997421 111 111111 0111111112221 1221 23334443333
Q ss_pred hhhhhhcccccCCCCc-ccceeEEEEeCCCCCCCcccccCC-----ceeEEEeccccc----cCcceEEccccccccccC
Q 016060 232 PLSKVFFAEVGGSTLD-SHHGFVVEYGKDRDVDLGFHVDDS-----EVTLNVCLGKQF----TGGELFFRGTRCEKHVNT 301 (396)
Q Consensus 232 Pl~~~LfPe~~g~~Ld-sh~~FVVrY~~~~d~~L~~H~D~S-----evTLNI~Ln~dF----eGGgl~F~g~~c~~hv~~ 301 (396)
-+... .+...++ ....-+.+|.+ .+.++.+|.|.. .+|+.++||+++ .||+|.|.....
T Consensus 103 ~ln~~----lGl~~i~~~~e~~~~~Y~~-~G~~y~~H~D~~~~~~R~~T~vlYLN~~w~~~~~GG~l~~~~~~~------ 171 (247)
T 2hbt_A 103 HCNGK----LGSYKINGRTKAMVACYPG-NGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGK------ 171 (247)
T ss_dssp HTTTT----STTCCEEEECCEEEEEECS-SSCCEEEECSSCSCCSEEEEEEEECBTTCCHHHHBCCEEECCTTC------
T ss_pred HHhhh----cCcccccccceEEEEEecC-CCCcccccccCCCCCCceEEEEEEeCCCCCCCCCceeEEEecCCC------
Confidence 22221 1111111 11233689986 234999999973 599999999854 599999875321
Q ss_pred CCCccceeeecCCCceEEEecCC--CCcCCccCCccceeEEEeechhhHHHHH
Q 016060 302 GSQTEEIFDYSHVPGRAVLHRGR--HRHGARATTSGHRVNLLLWCRSSVFREM 352 (396)
Q Consensus 302 ~~~~~e~~~y~~~~G~AlLHpGr--h~HeglpVTsG~RynLV~W~rss~~R~~ 352 (396)
+....+.|+.|.+|+|... ..|+++| +.|+||.+..|++....|+.
T Consensus 172 ----~~~~~v~P~~grlv~F~s~~~~~H~V~p-~~~~R~sit~W~~~~~~~~~ 219 (247)
T 2hbt_A 172 ----AQFADIEPKFDRLLFFWSDRRNPHEVQP-AYATRYAITVWYFDADERAR 219 (247)
T ss_dssp ----SSCEEECCBTTEEEEEECSTTCCEEECC-BSSCEEEEEEEEEEHHHHHH
T ss_pred ----CceEEEEcCCCEEEEEecCCCceeeecc-CCCEEEEEEEEEcCCchhhh
Confidence 1235678999999999976 7999999 67999999999999988763
No 5
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=97.97 E-value=9.3e-05 Score=78.66 Aligned_cols=198 Identities=15% Similarity=0.144 Sum_probs=124.0
Q ss_pred ccccCchhHHHhhhccHhhhhhhccccCCcEEEecCCCHHHHHHHHHHHHhhhhhhhcccccc---cccCCCCc-ccccc
Q 016060 138 GNFFVPPFVKAIQDNTEESFRSIISEPSPGVFTFEMLQPRFCELLLAEVENFEKWVNEAKFRI---MRPNTMNK-YGAVL 213 (396)
Q Consensus 138 e~~l~P~f~~ai~~~~~~~l~~i~~ep~P~Vy~fpvfspefC~~LIeE~E~f~~ws~gs~~~i---~rPn~mN~-ygvvL 213 (396)
..++++.|.+.++... .-..|.|-+..-.+|++++-+.+.+|+..--.|.. ...++ .......+ -+..-
T Consensus 13 ~~~~~~~~~~~lk~~y------~~s~PFpH~VIdnfl~d~lle~V~~Efp~~i~f~~-KetDlYk~~QsgdLanl~~l~~ 85 (633)
T 3kt7_A 13 PKIWDKTFQDGLKKEI------EDSQPYNWGTIHELVNDDLLRAVRKEIETEIHFTK-KETDIYRVNQSGDLANLSGLDW 85 (633)
T ss_dssp GGGGCHHHHHHHHHHH------HTCSSSCCEEESSCBCHHHHHHHHHHHHHHCCCEE-EECSSEEEEECCCTTCTTSCCT
T ss_pred hhhcCHHHHHHHHhhh------hcCCCcceEEECCCCCHHHHHHHHHHhhhccCccc-ccccccceeccccccccccCCh
Confidence 3477888887777641 23679999988899999999999999874223321 11111 11111111 11222
Q ss_pred cccChHHHHHHHHHHHhhhhhhhhcccccCC-CCc--ccceeEEEEeCCCCCCCcccccCC---ceeEEEeccc-c----
Q 016060 214 DDFGLETMLDKLMETYIRPLSKVFFAEVGGS-TLD--SHHGFVVEYGKDRDVDLGFHVDDS---EVTLNVCLGK-Q---- 282 (396)
Q Consensus 214 ddiGl~~~~~~Ll~~yl~Pl~~~LfPe~~g~-~Ld--sh~~FVVrY~~~~d~~L~~H~D~S---evTLNI~Ln~-d---- 282 (396)
+++..-.-|..|++...++-.+.+.-.+.|. .|. ....-+.+|.++. ++..|.|.. .+|+-++||+ +
T Consensus 86 e~l~~lp~l~~Lr~~L~S~~Fr~~Ls~iTGi~~Lsg~~~D~~~a~Y~~G~--fL~~H~D~~~~RrvS~VLYLN~pd~~W~ 163 (633)
T 3kt7_A 86 DDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKTDMSINTYTKGC--HLLTHDDVIGSRRISFILYLPDPDRKWK 163 (633)
T ss_dssp TCCTTCHHHHHHHHHHTSHHHHHHHHHHHTCCCCCSSCCCEEEEEECTTC--EEEEECCCCTTEEEEEEEECSCTTSCCC
T ss_pred hhhccChHHHHHHHHHhcHHHHHHHHHHhCCcccCCCceeEEEEEeCCCC--eeeecCCCCCCeEEEEEEEcCCCCCCCC
Confidence 3333334455555544444433344333332 231 1233457898765 999999964 4999999997 4
Q ss_pred -ccCcceEEccccccccccCCCCccceeeecCCCceEEEecC---CCCcCCccCC-ccceeEEEeechhhH
Q 016060 283 -FTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRG---RHRHGARATT-SGHRVNLLLWCRSSV 348 (396)
Q Consensus 283 -FeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpG---rh~HeglpVT-sG~RynLV~W~rss~ 348 (396)
..||+|.+........ ...+.+..+.|.-|+.++|.- ...|++.+|+ ...|+.+.+|.+...
T Consensus 164 ~e~GGeL~Lyd~d~~~~----P~~d~~~~I~P~fNrLV~F~vsp~~S~H~V~eV~~~~~RlSItGWF~~p~ 230 (633)
T 3kt7_A 164 SHYGGGLRLFPSILPNV----PHSDPSAKLVPQFNQIAFFKVLPGFSFHDXEEVKVDKHRLSIQGWYHIPQ 230 (633)
T ss_dssp GGGBCCEEECCEEETTE----ECSSCSEEECCCTTEEEEEECCTTTCCEEECCBCSSCCEEEEEEEEECCC
T ss_pred ccCCceEEEecCCCcCC----CCCCceEEEecCCCeEEEEEcCCCCCcCCCCccCCCCCEEEEEEEeccCC
Confidence 5699999986542100 001234567899999999974 5999999988 566999999999774
No 6
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=97.57 E-value=0.00059 Score=63.19 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=68.1
Q ss_pred ceeEEEEeCCCCCCCccccc-CCceeEEEeccccccCcceEEcccccccccc-----CCCC--ccceeeecCCCceEEEe
Q 016060 250 HGFVVEYGKDRDVDLGFHVD-DSEVTLNVCLGKQFTGGELFFRGTRCEKHVN-----TGSQ--TEEIFDYSHVPGRAVLH 321 (396)
Q Consensus 250 ~~FVVrY~~~~d~~L~~H~D-~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~-----~~~~--~~e~~~y~~~~G~AlLH 321 (396)
...++.|.++. ....|.| ++.+|..++|+..-.||+|.|...+....+. .+.. ......+.|++|..|||
T Consensus 104 ~~W~~~~~~G~--~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~~~~~~~~~~~i~P~~G~lvlF 181 (216)
T 2rg4_A 104 DIWINILPEGG--VHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLLW 181 (216)
T ss_dssp EEEEEEECTTC--CEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCCSCGGGCSEEEECCCTTEEEEE
T ss_pred eEEEEEcCCCC--cccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccccCcccCCCeeEecCCCCeEEEE
Confidence 56789998865 8899999 4789999999866679999998653210000 0000 02234679999999999
Q ss_pred cCCCCcCCccCCc-cceeEEEeec
Q 016060 322 RGRHRHGARATTS-GHRVNLLLWC 344 (396)
Q Consensus 322 pGrh~HeglpVTs-G~RynLV~W~ 344 (396)
|+...|++.|..+ +.|+.+-.-+
T Consensus 182 pS~l~H~V~p~~~~~~RiSIsFN~ 205 (216)
T 2rg4_A 182 ESWLRHEVPMNMAEEDRISVSFNY 205 (216)
T ss_dssp ETTSCEEECCCCSSSCEEEEEEEE
T ss_pred CCCCEEeccCCCCCCCEEEEEEEe
Confidence 9999999999886 6788765443
No 7
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=97.55 E-value=0.0013 Score=61.40 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCCcccccCC-------ceeEEEeccc-cccCcceEEcccccc----cc----------------cc-CCCCccceeee
Q 016060 261 DVDLGFHVDDS-------EVTLNVCLGK-QFTGGELFFRGTRCE----KH----------------VN-TGSQTEEIFDY 311 (396)
Q Consensus 261 d~~L~~H~D~S-------evTLNI~Ln~-dFeGGgl~F~g~~c~----~h----------------v~-~~~~~~e~~~y 311 (396)
+....+|.|.. .+|+.|+|.+ .=+.|.|.|....-. .+ +. ......+...+
T Consensus 134 g~~~~wHqD~~~~~~~~~~v~~wiaL~d~~~enG~l~vvPGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 213 (288)
T 2rdq_A 134 HYLTPFHQDGFYIGPNQDFRTFWIPLIRTTRESGGVALADGSHRRGKRDHVLNESFRRFGHPVRGIPPTEVSEDEHLLHS 213 (288)
T ss_dssp TTSCCSBCHHHHSCSCCCCEEEEEESSCCCTTTCEEEEETTTTSSCCCCCEEEEEEEETTEEEEECCGGGSCTTSCEECC
T ss_pred CCCcCccccccccCCCCCeEEEEEECCCCCccCCcEEEEeCCccccccccccchhhhccCcccccCCCccccccCceeec
Confidence 45789999953 5789999976 456777877642110 00 00 00011233556
Q ss_pred cCCCceEEEecCCCCcCCccCCcc----ceeEEEeechhh
Q 016060 312 SHVPGRAVLHRGRHRHGARATTSG----HRVNLLLWCRSS 347 (396)
Q Consensus 312 ~~~~G~AlLHpGrh~HeglpVTsG----~RynLV~W~rss 347 (396)
..++|.+|+|.+..+|++.+-++. .|+.++.|....
T Consensus 214 ~~~aGdv~lf~~~~~H~s~~N~s~~~R~~R~s~~~~~~~~ 253 (288)
T 2rdq_A 214 PMEPGDILLFHAHMCHKSIPNLSKDPRLMRMSMDTRVQPA 253 (288)
T ss_dssp CCCTTCEEEEETTCCEEEECCCCCTTCCCEEEEEEEEEET
T ss_pred ccCCCCEEEEeCCceecCCCCCCCCccceEEEEEEEEecC
Confidence 789999999999999999998876 379999988765
No 8
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9
Probab=97.47 E-value=0.0013 Score=62.41 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=55.7
Q ss_pred CcccccCC---------ceeEEEeccc-cccCcceEEccccccc----c---------------ccCCCCccceeeecCC
Q 016060 264 LGFHVDDS---------EVTLNVCLGK-QFTGGELFFRGTRCEK----H---------------VNTGSQTEEIFDYSHV 314 (396)
Q Consensus 264 L~~H~D~S---------evTLNI~Ln~-dFeGGgl~F~g~~c~~----h---------------v~~~~~~~e~~~y~~~ 314 (396)
..+|.|.+ .+|+.|+|.+ .=++|.|.|....-.. + +.......+......+
T Consensus 142 ~~wHqD~~~~~~~p~~~~v~~wiaL~D~~~enG~l~~vPGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 221 (308)
T 2a1x_A 142 HPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVME 221 (308)
T ss_dssp -CCBCGGGGCCEECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCCCC-----------CCCCC-CCCSCCEEECBC
T ss_pred CCCccCCccccCCCCCCeEEEEEEeeccCCCCCcEEEEcCCCCCccccccccccccCccccccCCccccccCCeEEccCC
Confidence 68999954 3788899975 4567788886422110 0 0000011345667889
Q ss_pred CceEEEecCCCCcCCccCCc-cceeEEEeechhh
Q 016060 315 PGRAVLHRGRHRHGARATTS-GHRVNLLLWCRSS 347 (396)
Q Consensus 315 ~G~AlLHpGrh~HeglpVTs-G~RynLV~W~rss 347 (396)
+|.+++|.++.+|++.+-++ ..|.++++.....
T Consensus 222 aGd~vlf~~~~~H~s~~N~s~~~R~~~~~~y~~~ 255 (308)
T 2a1x_A 222 KGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASA 255 (308)
T ss_dssp TTCEEEECTTCCEEECCBCSSSCEEEEEEEEEET
T ss_pred CccEEEECCCccccCCCCCCCCceEEEEEEEECC
Confidence 99999999999999998755 6688887755543
No 9
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=97.29 E-value=0.0036 Score=58.63 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCCCCCCcccccCC---------ceeEEEeccc-cccCcceEEccccccccc-----cC---------------CCCccc
Q 016060 258 KDRDVDLGFHVDDS---------EVTLNVCLGK-QFTGGELFFRGTRCEKHV-----NT---------------GSQTEE 307 (396)
Q Consensus 258 ~~~d~~L~~H~D~S---------evTLNI~Ln~-dFeGGgl~F~g~~c~~hv-----~~---------------~~~~~e 307 (396)
|+.+....+|.|.+ .+|+.|+|.+ .=++|.|.|....-...+ .. .....+
T Consensus 147 Pg~~~~~~wHqD~~~~~~~p~~~~~~~wi~L~d~~~~nG~l~~vPGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (291)
T 2opw_A 147 PHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSL 226 (291)
T ss_dssp TTTBCCEEEECGGGTSCEESSSCEEEEEEESSCBCTTTTCEEEETTCSSSCCSEEEEECC----CCEEEEECCCCCCGGG
T ss_pred CCCCCCcCCeeCCcccccCCCCceEEEEEEcccCCCCCCCEEEECCccCCCcccccccCCCCCCCcceeeccccCCCcCC
Confidence 55555689999963 5888889975 456788887632110000 00 001134
Q ss_pred eeeecCCCceEEEecCCCCcCCccCCcc-ceeEEEeech
Q 016060 308 IFDYSHVPGRAVLHRGRHRHGARATTSG-HRVNLLLWCR 345 (396)
Q Consensus 308 ~~~y~~~~G~AlLHpGrh~HeglpVTsG-~RynLV~W~r 345 (396)
...+..++|.+|+|.++.+|++.+-++. .|.++++-..
T Consensus 227 ~v~~~~~aGd~~~f~~~~~H~s~~N~s~~~R~~~~~~~~ 265 (291)
T 2opw_A 227 FVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYTFHLM 265 (291)
T ss_dssp CEEECBCTTCEEEEETTCEEEECCBCSSSCCCEEEEEEE
T ss_pred eeecccCCCcEEEEcCCceecCCCCCCCCceEEEEEEEE
Confidence 5667889999999999999999987764 5777765443
No 10
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*
Probab=97.14 E-value=0.0093 Score=56.52 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=32.8
Q ss_pred ceeeecCCCceEEEecCCCCcCCccCC--c-cceeEEEeechhhH
Q 016060 307 EIFDYSHVPGRAVLHRGRHRHGARATT--S-GHRVNLLLWCRSSV 348 (396)
Q Consensus 307 e~~~y~~~~G~AlLHpGrh~HeglpVT--s-G~RynLV~W~rss~ 348 (396)
+......++|.+++|.++.+|++.+-+ + ..|.++++-..+..
T Consensus 218 ~~v~~~~~aGd~v~f~~~l~H~s~~N~~ss~~~R~a~~~~y~~~~ 262 (313)
T 2fct_A 218 SAVPMQMKAGQFIIFWSTLMHASYPHSGESQEMRMGFASRYVPSF 262 (313)
T ss_dssp GCEEECBCTTEEEEEETTSEEEECCBCSSSSSCEEEEEEEEEETT
T ss_pred ceeEeeeCCceEEEEeCCceeeCCCCCCCCCCceEEEEEEEECCC
Confidence 455678899999999999999999987 4 45877766555443
No 11
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*
Probab=96.89 E-value=0.0068 Score=58.74 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=30.8
Q ss_pred ceeeecCCCceEEEecCCCCcCCccCC--cc-ceeEEEeechhh
Q 016060 307 EIFDYSHVPGRAVLHRGRHRHGARATT--SG-HRVNLLLWCRSS 347 (396)
Q Consensus 307 e~~~y~~~~G~AlLHpGrh~HeglpVT--sG-~RynLV~W~rss 347 (396)
+.+.+..++|.+|+|.|+.+|++.+-+ +. .|.++++-....
T Consensus 220 ~~v~~~~~aGd~v~f~~~~~H~s~~N~~ts~~~R~a~~~~y~~~ 263 (319)
T 3gja_A 220 QAYPMVLKPGEAVIFWSNTMHASLPHTGSKTDYRMGFAARYVPT 263 (319)
T ss_dssp -CCBCCBCTTEEEEEETTSCEEECCCCSCTTCCEEEEEEEEEET
T ss_pred ceeEeeECCCeEEEEcCCccccCCCCCCCCCCcEEEEEEEEECC
Confidence 455667899999999999999999887 54 477776544433
No 12
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}
Probab=96.57 E-value=0.0076 Score=58.25 Aligned_cols=174 Identities=14% Similarity=0.229 Sum_probs=87.9
Q ss_pred cEEEe-cCCCHHHHHHHHHHHHhhhhhhh--cccccccccCCCCcccccccccChHHHHHHHH-HHHhhhhhhhhccccc
Q 016060 167 GVFTF-EMLQPRFCELLLAEVENFEKWVN--EAKFRIMRPNTMNKYGAVLDDFGLETMLDKLM-ETYIRPLSKVFFAEVG 242 (396)
Q Consensus 167 ~Vy~f-pvfspefC~~LIeE~E~f~~ws~--gs~~~i~rPn~mN~ygvvLddiGl~~~~~~Ll-~~yl~Pl~~~LfPe~~ 242 (396)
|...+ .+|+++.|+.|.++++....... +....+..+.. ....-+++-......+..|+ ...|..+++.|+
T Consensus 47 Gyvvi~~~ls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~f~~l~~~p~l~~i~~~ll---- 121 (310)
T 3emr_A 47 GFLQIKNFFSEDEVIDMQKAIFELQDSIKDVASDKVIREPES-NDIRSIFHVHQDDNYFQDVANDKRILDIVRHLL---- 121 (310)
T ss_dssp SEEEETTCSCHHHHHHHHHHHHHHHHHTTTCCCTTEEECTTT-CCEEEEECHHHHCHHHHHHHTCHHHHHHHHHHH----
T ss_pred CEEEccCCCCHHHHHHHHHHHHHHHhcccccCCccceecCCC-cceeEEeehhhccHHHHHHHhChHHHHHHHHHc----
Confidence 66666 59999999999999987654211 11111111111 01011111001112222221 222333333333
Q ss_pred CCCCcccceeEEEEeC-CCCCCCcccccC------------CceeEEEeccc-cccCcceEEccccccccc----cCC--
Q 016060 243 GSTLDSHHGFVVEYGK-DRDVDLGFHVDD------------SEVTLNVCLGK-QFTGGELFFRGTRCEKHV----NTG-- 302 (396)
Q Consensus 243 g~~Ldsh~~FVVrY~~-~~d~~L~~H~D~------------SevTLNI~Ln~-dFeGGgl~F~g~~c~~hv----~~~-- 302 (396)
|..+.-+.. .+-+.+ +.+....+|.|. ..+|+.|+|.+ .=+.|.|.|....-...+ +..
T Consensus 122 G~~~~l~~s-~~~~k~p~~g~~~~wHqD~~~~~~~~g~P~~~~v~~wiaL~D~t~enG~l~viPGSH~~~~~~~g~~p~~ 200 (310)
T 3emr_A 122 GSDVYVHQS-RINYKPGFKGKEFDWHSDFETWHVEDGMPRMRAISVSIALSDNYSFNGPLMLIPGSHNYFVSCVGETPDN 200 (310)
T ss_dssp TSCEEEEEE-EEECCCTTCCCCEEEECHHHHHHHHHCCCSSCEEEEEEESSCBCSSSCCCEECTTGGGEEEECCC-----
T ss_pred CCceEEEee-EEEEcCCCCCCCCCcCCCCccccccCCCcccceEEEEEEecCCCCcCCCEEEEeCCCCCccccccccccc
Confidence 211111111 122333 345678999994 24888999975 356777887532111000 000
Q ss_pred -------------CCc---------cc-eeeecCCCceEEEecCCCCcCCccCCcc-ceeEEEeechh
Q 016060 303 -------------SQT---------EE-IFDYSHVPGRAVLHRGRHRHGARATTSG-HRVNLLLWCRS 346 (396)
Q Consensus 303 -------------~~~---------~e-~~~y~~~~G~AlLHpGrh~HeglpVTsG-~RynLV~W~rs 346 (396)
... .. +.....++|.+++|.|+.+|++.+-++. .|.++++-..+
T Consensus 201 ~~~~~l~~~~~g~p~~~~~~~~~~~~~~~v~~~~~aGdvl~f~~~~~H~s~~N~S~~~R~~l~~~y~~ 268 (310)
T 3emr_A 201 NYKESLKKQKLGVPDEESLRELTRIGGGISVPTGKAGSVTLFESNTMHGSTSNITPYPRNNLFMVYNS 268 (310)
T ss_dssp ------------CCCHHHHHHHHHHHTSCBCCCBSTTCEEEEETTCCEEECCCCSSCCCCEEEEEEEE
T ss_pred ccccccccccccCCCHHHHHHHHhccCceEEeeeCCceEEEEeCCceecCCCCCCCCCeEEEEEEEeC
Confidence 000 01 4556779999999999999999886654 46666544433
No 13
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=94.74 E-value=0.089 Score=52.09 Aligned_cols=170 Identities=12% Similarity=0.130 Sum_probs=89.7
Q ss_pred cEEEe-cCCCHHHHHHHHHHHHhhhhhhhcccc--cccccC----CCCcccccccccChHHHHHHHHHHHhhhhhhhhcc
Q 016060 167 GVFTF-EMLQPRFCELLLAEVENFEKWVNEAKF--RIMRPN----TMNKYGAVLDDFGLETMLDKLMETYIRPLSKVFFA 239 (396)
Q Consensus 167 ~Vy~f-pvfspefC~~LIeE~E~f~~ws~gs~~--~i~rPn----~mN~ygvvLddiGl~~~~~~Ll~~yl~Pl~~~LfP 239 (396)
|-.++ .||++++-++|.++++...+-...++. .|+-|. -++- =-.|+++... +..+..++...+-+
T Consensus 41 GYLvlk~vFs~eEv~~l~~el~~~~~d~~~~k~~~~i~~~~s~~lrs~~--H~~~~f~~h~-----~s~l~~rll~vl~~ 113 (344)
T 3nnf_A 41 GYCQIKKIFDFSAIKTIQKTLDQAKQESQISKEKVTLKLGGIDDIDTND--HAYDLVKYDF-----VSSFIQEKLALLNY 113 (344)
T ss_dssp SEEEETTCSCHHHHHHHHHHHHHHHHHCCCCSHHHHHHTTSCCCCBCSE--EEECSSCHHH-----HHHHHGGGHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHHHHHhhchhhhcccceecCCCccchhccc--ccchhHHHHH-----HHHHHHHHHHHHHH
Confidence 55555 599999999999999987542111111 111111 1110 0023344431 11122233333332
Q ss_pred cccCCCCcccceeEEEEeCCCCCCCccccc----------CCceeEEEeccc--cccCcceEEcc---------ccc---
Q 016060 240 EVGGSTLDSHHGFVVEYGKDRDVDLGFHVD----------DSEVTLNVCLGK--QFTGGELFFRG---------TRC--- 295 (396)
Q Consensus 240 e~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D----------~SevTLNI~Ln~--dFeGGgl~F~g---------~~c--- 295 (396)
-+ |..+-.|..-.+.+.|+ ...|.||.| +..+|+-|.|.+ .-++|++.+-. +.-
T Consensus 114 Ll-G~el~i~qs~~fe~kPG-~KGFpWH~D~~~F~~~~~eD~a~S~WIpLd~i~~e~nGGM~~VP~s~~Sgs~~y~~~d~ 191 (344)
T 3nnf_A 114 IT-GKNLMIMHNALFSVEPN-HKGLPWHVGVGSFSFTKTEDFGASIWIPLDKITKEHRGGMQYVSTKIFPGQFYYSVFDL 191 (344)
T ss_dssp HH-TSCEEEEEEEEEEECBT-CCBSCSBCTTTTTTTBCTTSCEEEEEEESSCBCTTTBCSEEEECTTTCCTHHHHHHHHH
T ss_pred Hh-CCceeeeecceEeeCCC-CCCCCceecccccccccCCCCeEEEEEECCCCCccCCCceEEecCcccCcceeeecchH
Confidence 22 33333333334667887 789999999 446899999953 23455555543 110
Q ss_pred --ccccc---CCCCccc------------------------eeeecCCCceEEEecCCCCcCCccCCcc---ceeEEEee
Q 016060 296 --EKHVN---TGSQTEE------------------------IFDYSHVPGRAVLHRGRHRHGARATTSG---HRVNLLLW 343 (396)
Q Consensus 296 --~~hv~---~~~~~~e------------------------~~~y~~~~G~AlLHpGrh~HeglpVTsG---~RynLV~W 343 (396)
..... ....-++ ..+....||.||+|....+|++.|...+ .|-++++-
T Consensus 192 ~~~~~Lk~qe~~~sLee~la~~~gi~~~~~~~~i~~~le~~~~ewd~epGDav~F~~~tlHga~plgn~~~~rRRAfS~R 271 (344)
T 3nnf_A 192 HLKNNIKWDESQGDLNEYVANANTIYNKITEDVIDYTIKDGYEEDEYNLGDAFFFNKYVLHQSVPLKPGLHKLRRAFVIR 271 (344)
T ss_dssp HHHHHTTCCGGGCCHHHHHHHCCCHHHHCCHHHHHHHHTTCEEECCBCTTCEEEEETTCEEEECCBCTTSCSCEEEEEEE
T ss_pred HHHHHhhccCCcccHHHHHHhhcCcccCccccccchhhhhhhccccCCCCcEEEEecceeecCCCCCCCCccceeEEEEE
Confidence 00000 0000011 1233458999999999999999977663 46666554
Q ss_pred ch
Q 016060 344 CR 345 (396)
Q Consensus 344 ~r 345 (396)
.-
T Consensus 272 fv 273 (344)
T 3nnf_A 272 LV 273 (344)
T ss_dssp EE
T ss_pred Ee
Confidence 33
No 14
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=94.66 E-value=0.14 Score=47.99 Aligned_cols=160 Identities=16% Similarity=0.241 Sum_probs=88.2
Q ss_pred CcEEEec-CCCHHHHHHHHHHHHhhhhhhhcccc----cccccCCCCcccc--------ccccc-ChHHHHHHHHHHHhh
Q 016060 166 PGVFTFE-MLQPRFCELLLAEVENFEKWVNEAKF----RIMRPNTMNKYGA--------VLDDF-GLETMLDKLMETYIR 231 (396)
Q Consensus 166 P~Vy~fp-vfspefC~~LIeE~E~f~~ws~gs~~----~i~rPn~mN~ygv--------vLddi-Gl~~~~~~Ll~~yl~ 231 (396)
|+|+.+| +|+++..++|++++.+--.|...... ...-|....-||- ..... ++-..+..+++. +
T Consensus 40 ~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~~g~~~~~~R~~~~~g~~~Y~Ys~~~~~~~p~wp~~l~~l~~~-~- 117 (238)
T 2iuw_A 40 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNR-I- 117 (238)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEEEEECCCTTSCHHHHCCBSSCCHHHHHHHHH-H-
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHhCCCccCceecCCcccccCCeeEEcCCCccccCCcccCCCCCCCHHHHHHHHH-H-
Confidence 5788886 99999999999999754456432210 0001222222331 11111 333333333321 1
Q ss_pred hhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCC------ceeEEEeccccccCcceEEcccccccccc--CCC
Q 016060 232 PLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDS------EVTLNVCLGKQFTGGELFFRGTRCEKHVN--TGS 303 (396)
Q Consensus 232 Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S------evTLNI~Ln~dFeGGgl~F~g~~c~~hv~--~~~ 303 (396)
. .++ +..+| ...|-.|.++ +..+++|.|+. ..-++|+| |+.+.|. .+|..... .+.
T Consensus 118 --~-~~~----g~~~n--~~LvN~Y~~G-~d~i~~H~D~~~~~~~~~~IaslSL-----G~~~~f~-f~~~~~~~~~~~~ 181 (238)
T 2iuw_A 118 --E-ENT----GHTFN--SLLCNLYRNE-KDSVDWHSDDEPSLGRCPIIASLSF-----GATRTFE-MRKKPPPEENGDY 181 (238)
T ss_dssp --H-HHH----SCCCC--EEEEEEECST-TCCEEEECCCCGGGCSSCCEEEEEE-----ESCEEEE-EEECCC-------
T ss_pred --H-HHh----CCCCC--EEEEEEECCC-CCceeCCcCChhhcCCCCcEEEEEC-----CCCEEEE-EeccCCccccCcc
Confidence 1 122 22334 4566778765 34899999974 24456666 3444443 22211000 000
Q ss_pred CccceeeecCCCceEEEecCC----CCcCCccCC--ccceeEEEee
Q 016060 304 QTEEIFDYSHVPGRAVLHRGR----HRHGARATT--SGHRVNLLLW 343 (396)
Q Consensus 304 ~~~e~~~y~~~~G~AlLHpGr----h~HeglpVT--sG~RynLV~W 343 (396)
.....+.+....|..|+-.|. ..|+..++. .|.|.||..-
T Consensus 182 ~~~~~~~i~L~~gsllvM~G~~r~~w~H~I~~~~~~~~~RIsLTfR 227 (238)
T 2iuw_A 182 TYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFR 227 (238)
T ss_dssp -CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEE
T ss_pred cCCceEEEEcCCCCEEEEChhhhCccEecCCCcCCCCCCEEEEEee
Confidence 012456778999999999998 579988874 8899999753
No 15
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=94.58 E-value=0.077 Score=52.66 Aligned_cols=143 Identities=16% Similarity=0.335 Sum_probs=74.1
Q ss_pred cccCCcEEEec-CCCHHHHHHHHHHHHhhhhhhhccc-c---cccccCCCCccccccc------c------cChHHHHHH
Q 016060 162 SEPSPGVFTFE-MLQPRFCELLLAEVENFEKWVNEAK-F---RIMRPNTMNKYGAVLD------D------FGLETMLDK 224 (396)
Q Consensus 162 ~ep~P~Vy~fp-vfspefC~~LIeE~E~f~~ws~gs~-~---~i~rPn~mN~ygvvLd------d------iGl~~~~~~ 224 (396)
....|||+.+| ++++++.+.|+++++ |..... + ....+.....||..++ + .++-.++..
T Consensus 107 ~~lp~Gl~~~p~fis~~Ee~~Ll~~i~----w~~~~~~~~~~~~l~~Rr~~~yG~~Y~Ys~~~~~~~~p~p~~~P~~L~~ 182 (345)
T 3tht_A 107 QALPPGLMVVEEIISSEEEKMLLESVD----WTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICES 182 (345)
T ss_dssp CSCCTTEEEETTCSCHHHHHHHHTTCC--------------------CEEECCC------------------CCCHHHHH
T ss_pred ccCCCceEEEcCcCCHHHHHHHHHhcc----cCCccccccCcccccCceEEEECCcccccccccccCCCCCcCcCHHHHH
Confidence 34467899986 999999999998775 433111 0 1122333444553211 1 123233444
Q ss_pred HHHHHhhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCCc----eeEEEeccccccCcceEEcccccccccc
Q 016060 225 LMETYIRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDSE----VTLNVCLGKQFTGGELFFRGTRCEKHVN 300 (396)
Q Consensus 225 Ll~~yl~Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~Se----vTLNI~Ln~dFeGGgl~F~g~~c~~hv~ 300 (396)
+++.... . ++.+..+| ...|-.|.++. .+++|.|+.. .-+.|+|+ +...|. .++..
T Consensus 183 l~~r~~~----~---~~~~~~~n--~~lvN~Y~~G~--~I~~H~D~~~~~~~~I~slSLG-----~~~~f~-f~~~~--- 242 (345)
T 3tht_A 183 FLEKWLR----K---GYIKHKPD--QMTINQYEPGQ--GIPAHIDTHSAFEDEIVSLSLG-----SEIVMD-FKHPD--- 242 (345)
T ss_dssp HHHHHHH----H---TSCSSCCS--EEEEEEECTTC--CEEEECCCTTTBCSCEEEEEES-----SCEEEE-EECTT---
T ss_pred HHHHHHh----c---ccCCCCCC--EEEEEEecCCC--CEeeccCCchhcCCeEEEEECC-----CceeEE-EccCC---
Confidence 4443221 1 12223333 46688899875 9999999852 23455554 333333 11110
Q ss_pred CCCCccceeeecCCCceEEEecCC----CCcCCccCC
Q 016060 301 TGSQTEEIFDYSHVPGRAVLHRGR----HRHGARATT 333 (396)
Q Consensus 301 ~~~~~~e~~~y~~~~G~AlLHpGr----h~HeglpVT 333 (396)
.....+....|..++-.|. +.|+..++.
T Consensus 243 -----~~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~ 274 (345)
T 3tht_A 243 -----GIAVPVMLPRRSLLVMTGESRYLWTHGITCRK 274 (345)
T ss_dssp -----SCEEEEEECTTEEEEECTHHHHTSEEEECCCS
T ss_pred -----CceEEEEcCCCcEEEEChHHhhceEccCCccc
Confidence 1234567889999999886 447655543
No 16
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=93.63 E-value=0.44 Score=43.57 Aligned_cols=158 Identities=17% Similarity=0.215 Sum_probs=87.3
Q ss_pred cEEEecCCCHHHHHHHHHHHHhhhhhhhc--cccc-----ccccCCCCcccc----------cccccChHHHHHHHHHHH
Q 016060 167 GVFTFEMLQPRFCELLLAEVENFEKWVNE--AKFR-----IMRPNTMNKYGA----------VLDDFGLETMLDKLMETY 229 (396)
Q Consensus 167 ~Vy~fpvfspefC~~LIeE~E~f~~ws~g--s~~~-----i~rPn~mN~ygv----------vLddiGl~~~~~~Ll~~y 229 (396)
.+|...+|+++.++.|++++.+--.|..+ ..+. +.-|....=||- .+...++..++..+++.
T Consensus 12 ~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~~gk~~~~pR~~~wyg~~~~~Y~Ysg~~~~~~pwp~~L~~l~~~- 90 (204)
T 3s57_A 12 DSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLERIRDH- 90 (204)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEETTEEEECSSEEEEEECTTCCEEETTEEECCEECCHHHHHHHHH-
T ss_pred eEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEECCeEeccCcEEEEECCCCCCcccCCCcccCCCCCHHHHHHHHH-
Confidence 46666799999999999999875567321 1111 111222111221 12223334455554432
Q ss_pred hhhhhhhhcccccCCCCcccceeEEEEeCCCCCCCcccccCC-c-----eeEEEeccccccCcceEEccccccccc-cCC
Q 016060 230 IRPLSKVFFAEVGGSTLDSHHGFVVEYGKDRDVDLGFHVDDS-E-----VTLNVCLGKQFTGGELFFRGTRCEKHV-NTG 302 (396)
Q Consensus 230 l~Pl~~~LfPe~~g~~Ldsh~~FVVrY~~~~d~~L~~H~D~S-e-----vTLNI~Ln~dFeGGgl~F~g~~c~~hv-~~~ 302 (396)
+ . .++ +..+| ...|-.|.++. ..+++|.|+. + .-++|+| |+...|. .+|...- ...
T Consensus 91 ~---~-~~~----g~~~n--~~LvN~Y~~G~-d~i~~H~D~~~~~~~~~~IasvSL-----G~~~~f~-~~~~~~~~~~~ 153 (204)
T 3s57_A 91 V---S-GVT----GQTFN--FVLINRYKDGS-DHICEHRDDERELAPGSPIASVSF-----GASRDFV-FRHKDSRGKSP 153 (204)
T ss_dssp H---H-HHH----CCCCS--EEEEEEESSTT-CCEEEECCCCTTBCTTCCEEEEEE-----ESCEEEE-EEEGGGCSSSC
T ss_pred H---H-HHh----CCCCc--eeEEEEECCCC-CcccceecChhhccCCCcEEEEEC-----CCceEEE-EEEcCCCcccc
Confidence 1 1 112 23334 46678898753 3799999983 2 4455665 3344443 2221100 000
Q ss_pred CCccceeeecCCCceEEEecCC----CCcCCccCC--ccceeEEEe
Q 016060 303 SQTEEIFDYSHVPGRAVLHRGR----HRHGARATT--SGHRVNLLL 342 (396)
Q Consensus 303 ~~~~e~~~y~~~~G~AlLHpGr----h~HeglpVT--sG~RynLV~ 342 (396)
........+....|..++-.|. +.|+..++. .|.|.||..
T Consensus 154 ~~~~~~~~~~L~~GsllvM~g~~q~~w~H~Ip~~~~~~~~RislTF 199 (204)
T 3s57_A 154 SRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTF 199 (204)
T ss_dssp SCCCCCEEEEECTTEEEEEETTHHHHEEEEECCCTTCCSCEEEEEE
T ss_pred ccCCceEEEECCCCCEEEECchhhheeEeeccccCCCCCCEEEEEe
Confidence 1112456678899999999998 568876665 388999874
No 17
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=89.81 E-value=0.94 Score=41.85 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=53.2
Q ss_pred ceeEEEEeCCCCCCCcccccCCc-----eeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC
Q 016060 250 HGFVVEYGKDRDVDLGFHVDDSE-----VTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR 324 (396)
Q Consensus 250 ~~FVVrY~~~~d~~L~~H~D~Se-----vTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr 324 (396)
...|-.|.++. .+++|.|..+ .-++|+| |+.+.|. .+|.. ..+....+....|..++-.|.
T Consensus 106 ~~LvN~Y~~G~--~i~~H~D~~e~~~~~pI~svSL-----G~~~~f~-f~~~~------~~~~~~~i~L~~GsllvM~G~ 171 (211)
T 3i3q_A 106 ACLINRYAPGA--KLSLHQDKDEPDLRAPIVSVSL-----GLPAIFQ-FGGLK------RNDPLKRLLLEHGDVVVWGGE 171 (211)
T ss_dssp EEEEEEECTTC--CEEEECCCCCSCTTSCEEEEEE-----ESCEEEE-ECCSS------TTSCCEEEEECTTCEEEECGG
T ss_pred EEEEEEEcCCC--CcccccCCCccccCCCEEEEEC-----CCCeEEE-Eeccc------CCCceEEEECCCCCEEEECch
Confidence 46677898876 9999999422 2335555 4444444 22211 112345678899999999887
Q ss_pred ---CCcCCccCCc-------cceeEEEee
Q 016060 325 ---HRHGARATTS-------GHRVNLLLW 343 (396)
Q Consensus 325 ---h~HeglpVTs-------G~RynLV~W 343 (396)
+.|+..++.. |.|.||..-
T Consensus 172 ~r~~~H~I~~~~~~~~p~~~~~RIsLTFR 200 (211)
T 3i3q_A 172 SRLFYHGIQPLKAGFHPLTIDCRYNLTFR 200 (211)
T ss_dssp GTTCCEEECCCCCCCBTTTBTCEEEEEEE
T ss_pred HHceEeccCcccCCcCCCCCCCEEEEEee
Confidence 7899888886 569998753
No 18
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum}
Probab=86.85 E-value=0.47 Score=45.29 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=57.7
Q ss_pred CCcccccCCceeEEEecc-ccccCcceEEccccccccccCCCCccceeeec-CCCceEEEecCC-CCcCCccCCc-----
Q 016060 263 DLGFHVDDSEVTLNVCLG-KQFTGGELFFRGTRCEKHVNTGSQTEEIFDYS-HVPGRAVLHRGR-HRHGARATTS----- 334 (396)
Q Consensus 263 ~L~~H~D~SevTLNI~Ln-~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~-~~~G~AlLHpGr-h~HeglpVTs----- 334 (396)
-=+.|.|..++++.+.++ ..-+||+++....... ...... ..+|.+++.--+ .+|++.||.+
T Consensus 162 PEGiHrDG~d~v~v~lv~R~Ni~GGet~I~~~~~~----------~~~~~~l~~p~d~llv~D~~~~H~vTpI~~~~~~~ 231 (254)
T 3pl0_A 162 PEGAHRDGVDFVAVVFIGRQGVRGGETRVFDAAGP----------QGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDPAD 231 (254)
T ss_dssp TTCSBCCSSSEEEEEEEEEESEEECCEEEEETTSS----------EEEEECCCSTTCEEEEETTTEEEEECCEEESCTTC
T ss_pred CcccccCCCCEEEEEEecCCccccceEEEEcCCCC----------ccceeEecCCCcEEEEeCCcccCCCCccccCCCCC
Confidence 357999999999999997 4688999998865321 122222 388888888755 8999999874
Q ss_pred ----cceeEEEeechhhH
Q 016060 335 ----GHRVNLLLWCRSSV 348 (396)
Q Consensus 335 ----G~RynLV~W~rss~ 348 (396)
|.|-+||+-.+.-.
T Consensus 232 ~~~~g~RDvlVvtf~~~~ 249 (254)
T 3pl0_A 232 PAVPAHRDTLVLTYRSGG 249 (254)
T ss_dssp TTSCCEEEEEEEEEESSS
T ss_pred CCCceEEEEEEEEecCCc
Confidence 88999999887643
No 19
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=80.79 E-value=3.2 Score=40.70 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=59.8
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+- ....+++|+|-+.+||... ++ -|||.... . .+++.+.+.+|..|+.-|.
T Consensus 214 l~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d~--v~GLQV~~-~-----------g~Wi~V~p~pgalvVNiGD~l~~ 277 (356)
T 1gp6_A 214 INYYPKCPQPELALGVEAHTDVSALTFILH--NM--VPGLQLFY-E-----------GKWVTAKCVPDSIVMHIGDTLEI 277 (356)
T ss_dssp EEEECCCSSTTTCCSEEEECCCSSEEEEEE--CS--CCCEEEEE-T-----------TEEEECCCCTTCEEEEECHHHHH
T ss_pred eeecCCCCCcccccCcCCccCCCeEEEEEE--cC--CCCeEEec-C-----------CcEEECcCCCCeEEEEeccHHHH
Confidence 5778653 3446889999999999875 32 36677652 1 3578889999999999884
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
..|.+..-....||.+..|+.-.
T Consensus 278 ~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~ 308 (356)
T 1gp6_A 278 LSNGKYKSILHRGLVNKEKVRISWAVFCEPP 308 (356)
T ss_dssp HTTTSSCCCCEEECCCSSCCEEEEEEEEECC
T ss_pred hcCCEeeccCceecCCCCCCEEEEEEeecCC
Confidence 57888765667899999999865
No 20
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=79.23 E-value=2.6 Score=40.70 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=59.5
Q ss_pred EEEEeCCC----CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGKDR----DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~~~----d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+-. ...+++|+|-+.+||... ++ +-|||..... .+++.+.+.+|..|+.-|.
T Consensus 159 l~~YPp~~~~~~~~g~~~HtD~g~lTlL~q--d~-~v~GLQV~~~------------g~Wi~V~p~pgalvVNiGD~l~~ 223 (319)
T 1w9y_A 159 VSNYPPCPKPDLIKGLRAHTDAGGIILLFQ--DD-KVSGLQLLKD------------GQWIDVPPMRHSIVVNLGDQLEV 223 (319)
T ss_dssp EEECCCCSCGGGGSSCCCBCCSSSEEEEEE--SS-SCCCEEEEET------------TEEEECCCCTTCEEEEECHHHHH
T ss_pred EEecCCCcccccccccccccCCCceEEEEe--cC-CCCeeeEeeC------------CeEEEcccCCCcEEEEhHHHHHH
Confidence 56776532 346899999999999864 21 2366776421 3578889999999999885
Q ss_pred --------CCcCCccCCccceeEEEeechhh
Q 016060 325 --------HRHGARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVTsG~RynLV~W~rss 347 (396)
..|.+..-..+.||.+..|+.-+
T Consensus 224 ~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~ 254 (319)
T 1w9y_A 224 ITNGKYKSVMHRVIAQKDGARMSLASFYNPG 254 (319)
T ss_dssp HTTTSSCCCCEEECCCSSSCCEEEEEEEECC
T ss_pred HhCCeeecccceecCCCCCCceEEEEEecCC
Confidence 57888776678899999999754
No 21
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=78.80 E-value=3.1 Score=39.39 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=57.6
Q ss_pred EEEEeCCC------CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC--
Q 016060 253 VVEYGKDR------DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR-- 324 (396)
Q Consensus 253 VVrY~~~~------d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr-- 324 (396)
+.+|-+-. ...+++|+|-+.+||... + +-|||..... ..+.+.+.+.+|..|+.-|.
T Consensus 154 ~~~YP~~~~~~~~~~~g~~~HtD~g~lTlL~q--d--~~~GLqV~~~-----------~g~W~~V~p~pg~~vVNiGD~l 218 (280)
T 3on7_A 154 ILHYPPMTGDEEMGAIRAAAHEDINLITVLPT--A--NEPGLQVKAK-----------DGSWLDVPSDFGNIIINIGDML 218 (280)
T ss_dssp EEEECCCCTTCCCCSEEEEEECCCSSEEEEEC--C--SCCCEEEECT-----------TSCEEECCCCTTCEEEEECHHH
T ss_pred EEECCCCCCccccCcccccCCCCCCeEEEEEe--c--CCCCeEEEcC-----------CCCEEECcCCCCEEEEEcChHH
Confidence 57787532 234789999999999864 2 2367876532 13578889999999999886
Q ss_pred ----------CCcCCccCC----ccceeEEEeechhh
Q 016060 325 ----------HRHGARATT----SGHRVNLLLWCRSS 347 (396)
Q Consensus 325 ----------h~HeglpVT----sG~RynLV~W~rss 347 (396)
..|.+..-. ...||.+..|+.-.
T Consensus 219 ~~~Tng~~kS~~HRVv~~~~~~~~~~R~Si~~F~~P~ 255 (280)
T 3on7_A 219 QEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPH 255 (280)
T ss_dssp HHHTTTSSCCCCEEEECCTTCCTTSCEEECCEEECCC
T ss_pred HHHhCCcccCCCceEeCCCCCCCCCCeEEEEEEEcCC
Confidence 468765432 45799999999865
No 22
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=77.71 E-value=3.4 Score=39.71 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=56.7
Q ss_pred EEEEeCCC--------CCCCcccccCCceeEEEeccccccCcc--eEEccccccccccCCCCccceeeecCCCceEEEec
Q 016060 253 VVEYGKDR--------DVDLGFHVDDSEVTLNVCLGKQFTGGE--LFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHR 322 (396)
Q Consensus 253 VVrY~~~~--------d~~L~~H~D~SevTLNI~Ln~dFeGGg--l~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHp 322 (396)
+.+|-+-. +..+++|+|-+.+||...=+ + .||+ |.... . .+++.+.+.+|..||.-
T Consensus 161 l~~YPp~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~-~-v~G~~~LqV~~-~-----------g~W~~V~p~pg~lvVNi 226 (311)
T 1dcs_A 161 FRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTP-C-ANGFVSLQAEV-G-----------GAFTDLPYRPDAVLVFC 226 (311)
T ss_dssp EEEECC-----------CCEEEEEECSSEEEEEEEC-C-TTCCCCEEEEE-T-----------TEEEECCCCTTCEEEEE
T ss_pred eecCCCCCcccccCccccccccccCCCeEEEEecCC-C-CCCceeEEEEe-C-----------CEEEeCcCCCCeEEEEH
Confidence 46776522 33489999999999987621 2 2332 76653 1 35778899999999998
Q ss_pred CC------------CCcCCccCC-----ccceeEEEeechhh
Q 016060 323 GR------------HRHGARATT-----SGHRVNLLLWCRSS 347 (396)
Q Consensus 323 Gr------------h~HeglpVT-----sG~RynLV~W~rss 347 (396)
|. ..|.+..-. ...||.+..|+.-+
T Consensus 227 GD~l~~~TnG~~kS~~HRVv~~~~~~~~~~~R~Si~~F~~p~ 268 (311)
T 1dcs_A 227 GAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPN 268 (311)
T ss_dssp CHHHHHHTTSCSCCCCEEECCC----CTTCCEEEEEEEECCC
T ss_pred HHHHHHHhCCcccCCCceEeCCCcccCCCCCeEEEEEEEcCC
Confidence 85 578887654 55799999999865
No 23
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=75.99 E-value=3.9 Score=39.13 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=56.6
Q ss_pred EEEEeCC----CCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC----
Q 016060 253 VVEYGKD----RDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR---- 324 (396)
Q Consensus 253 VVrY~~~----~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr---- 324 (396)
+.+|-+- .+..+++|+|-+.+||... ++ -|||..... ..+++.+.+.+|..||.-|.
T Consensus 173 ~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~q--d~--v~GLqV~~~-----------~g~W~~V~p~pg~~vVNiGD~l~~ 237 (312)
T 3oox_A 173 LLHYPPIPKDATGVRAGAHGDINTITLLLG--AE--EGGLEVLDR-----------DGQWLPINPPPGCLVINIGDMLER 237 (312)
T ss_dssp EEEECCCSSCCC--CEEEECCCSSEEEEEC--CT--TSCEEEECT-----------TSCEEECCCCSSCEEEEECHHHHH
T ss_pred eEecCCCCCCcCCcCccceecCceEEEEeE--cC--cCceEEECC-----------CCcEEECCCCCCeEEEEhHHHHHH
Confidence 4678762 2356789999999999854 32 467776532 13578889999999999885
Q ss_pred --------CCcCCccCC----ccceeEEEeechhh
Q 016060 325 --------HRHGARATT----SGHRVNLLLWCRSS 347 (396)
Q Consensus 325 --------h~HeglpVT----sG~RynLV~W~rss 347 (396)
..|.+.... ...||.+..|+.-.
T Consensus 238 ~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~ 272 (312)
T 3oox_A 238 LTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFA 272 (312)
T ss_dssp HTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCC
T ss_pred HhCCeecCCCceEeCCCccCCCCCEEEEEEEecCC
Confidence 468875432 34599999999865
No 24
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=73.88 E-value=4.1 Score=39.39 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=53.1
Q ss_pred CCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCC------------CCcC
Q 016060 261 DVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGR------------HRHG 328 (396)
Q Consensus 261 d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGr------------h~He 328 (396)
...+++|+|-+.+||... ++ -|||..... .. ++.+.+.+|..||.-|. ..|.
T Consensus 208 ~~g~~~HtD~g~lTlL~q--d~--v~GLQV~~~-----------~g-Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HR 271 (331)
T 1odm_A 208 KLSFEWHEDVSLITVLYQ--SN--VQNLQVETA-----------AG-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR 271 (331)
T ss_dssp EEEEEEECCSSSEEEEEE--CS--SCCEEEEET-----------TE-EEECCCCTTSEEEEECHHHHHHTTTSSCCCCEE
T ss_pred ccccccccCCCeEEEEee--CC--CCCEEEEcC-----------CC-eEECCCCCCeEEEEccHHHHHHhCCEeeCCCce
Confidence 345889999999999876 22 477876521 13 67789999999999885 5788
Q ss_pred CccCCccceeEEEeechhh
Q 016060 329 ARATTSGHRVNLLLWCRSS 347 (396)
Q Consensus 329 glpVTsG~RynLV~W~rss 347 (396)
+.. ....||.+..|+.-.
T Consensus 272 Vv~-~~~~R~Sia~F~~P~ 289 (331)
T 1odm_A 272 VKW-VNAERQSLPFFVNLG 289 (331)
T ss_dssp EEC-CCSCEEEEEEEECCC
T ss_pred eCC-CCCCEEEEEEEEcCC
Confidence 863 356799999999865
No 25
>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}
Probab=70.89 E-value=5.3 Score=36.65 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=53.4
Q ss_pred eeEEEEeCCCCCCCcccccCCceeEEEeccccccCcceEEccccccccccCCCCccceeeecCCCceEEEecCCCCcCCc
Q 016060 251 GFVVEYGKDRDVDLGFHVDDSEVTLNVCLGKQFTGGELFFRGTRCEKHVNTGSQTEEIFDYSHVPGRAVLHRGRHRHGAR 330 (396)
Q Consensus 251 ~FVVrY~~~~d~~L~~H~D~SevTLNI~Ln~dFeGGgl~F~g~~c~~hv~~~~~~~e~~~y~~~~G~AlLHpGrh~Hegl 330 (396)
+++.+-.|+. .+.+|+|-+-..+.+-|+=.--.++|+|.=.+ -.+.-+.|.+++|-....|++-
T Consensus 104 a~fs~L~pG~--~I~pH~g~~n~~lR~HL~L~~p~~~~~i~V~~--------------~~~~w~eGe~~~fDds~~Hev~ 167 (197)
T 3rcq_A 104 IKYSIMHPGT--HVWPHTGPTNCRLRMHLGLVIPKEGCKIRCAN--------------ETKTWEEGKVLIFDDSFEHEVW 167 (197)
T ss_dssp EEEEEECTTE--EEEEECCSCTTEEEEEEEEECCSSSEEEEETT--------------EEECCCBTCEEEECTTSCEEEE
T ss_pred EEEEEeCCCC--CcCCeeCCCCCeEEEEEEEEeCCCCcEEEECC--------------EEEEeeCCcEEEEcCCeEEEEE
Confidence 4456666754 99999997665554444311100345554111 1246789999999999999999
Q ss_pred cCCccceeEEEeec
Q 016060 331 ATTSGHRVNLLLWC 344 (396)
Q Consensus 331 pVTsG~RynLV~W~ 344 (396)
--+.+.|++|++=+
T Consensus 168 N~~d~~RvvL~~D~ 181 (197)
T 3rcq_A 168 QDASSFRLIFIVDV 181 (197)
T ss_dssp ECSSSCEEEEEEEE
T ss_pred ECCCCCEEEEEEee
Confidence 99999999998744
No 26
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=66.63 E-value=2.3 Score=34.60 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=29.0
Q ss_pred CCCCcCCccCCccceeEEEeechh-hHHHHHHhhh-----hccccchhhhhhhHHH
Q 016060 323 GRHRHGARATTSGHRVNLLLWCRS-SVFREMKRYQ-----KDFSSWCGECFREKKE 372 (396)
Q Consensus 323 Grh~HeglpVTsG~RynLV~W~rs-s~~R~~~~y~-----~~f~~~c~~c~~~~~~ 372 (396)
|-|.|++.++-.-.+..||.=+.+ ..|.+.-+-. -=++.||+-|......
T Consensus 3 ~~~~~~~~~~~~~~~~~mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~ 58 (125)
T 1r26_A 3 GWHHHHHHGIRMRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERP 58 (125)
T ss_dssp ---------CCCSSCCSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHH
T ss_pred ccccccccceeeeccccceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHH
Confidence 347888888888888888888887 7776654211 1257899999776554
No 27
>1oih_A Putative alkylsulfatase ATSK; non-heme Fe(II) alphaketoglutarate dependent dioxygenase, jelly roll, oxidoreductase; 1.89A {Pseudomonas putida} SCOP: b.82.2.5 PDB: 1oii_A* 1oij_B* 1vz4_A 1vz5_A 1oik_A* 1oij_A* 1oij_C*
Probab=40.14 E-value=71 Score=29.71 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=26.4
Q ss_pred CCCCcccccCC------ceeEEEeccccccCcceEEcc
Q 016060 261 DVDLGFHVDDS------EVTLNVCLGKQFTGGELFFRG 292 (396)
Q Consensus 261 d~~L~~H~D~S------evTLNI~Ln~dFeGGgl~F~g 292 (396)
...+.+|.|.| .+++.-|+.-.=+||+|.|..
T Consensus 102 ~~~~~wHtD~sy~~~pP~~~~L~c~~~p~~GG~T~~ad 139 (301)
T 1oih_A 102 QRANSWHTDVTFVEAYPKASILRSVVAPASGGDTVWAN 139 (301)
T ss_dssp -CCCSCBCTTTTSSSCCSEEEEEEEECCSSCCCEEEEE
T ss_pred CcCcCCEecccCcCCCCceEEEEEeecCCCCCcccccc
Confidence 45789999998 689999997555899999975
No 28
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=38.76 E-value=14 Score=26.17 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=9.8
Q ss_pred cccchhhhhhhHH
Q 016060 359 FSSWCGECFREKK 371 (396)
Q Consensus 359 f~~~c~~c~~~~~ 371 (396)
|+.||+-|.....
T Consensus 7 ~a~wC~~C~~~~~ 19 (77)
T 1ilo_A 7 YGTGCANCQMLEK 19 (77)
T ss_dssp ECSSSSTTHHHHH
T ss_pred EcCCChhHHHHHH
Confidence 5689999976544
No 29
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=37.88 E-value=82 Score=24.34 Aligned_cols=34 Identities=9% Similarity=0.130 Sum_probs=27.2
Q ss_pred ecCCCceEEEecCCCCcCCccCCccceeEEEeech
Q 016060 311 YSHVPGRAVLHRGRHRHGARATTSGHRVNLLLWCR 345 (396)
Q Consensus 311 y~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W~r 345 (396)
+...+|.+++.+....|..... .+.++.+|++-.
T Consensus 78 ~~l~~Gd~i~i~~~~~H~~~~~-~~~~~~~i~~~~ 111 (114)
T 2ozj_A 78 IDLVPEDVLMVPAHKIHAIAGK-GRFKMLQITLID 111 (114)
T ss_dssp EEECTTCEEEECTTCCBEEEEE-EEEEEEEEEECC
T ss_pred EEecCCCEEEECCCCcEEEEeC-CCcEEEEEEEcc
Confidence 3578999999999999998875 567887777643
No 30
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=31.43 E-value=13 Score=26.66 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=9.9
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.|||-|......
T Consensus 10 ~~~C~~C~~~~~~ 22 (85)
T 1nho_A 10 SPTCPYCPMAIEV 22 (85)
T ss_dssp CSSSCCSTTHHHH
T ss_pred CCCCcchHHHHHH
Confidence 5899999876543
No 31
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=31.27 E-value=15 Score=27.44 Aligned_cols=12 Identities=25% Similarity=0.456 Sum_probs=8.9
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+.|......
T Consensus 29 ~~C~~C~~~~~~ 40 (106)
T 3die_A 29 TACGPCKMIAPV 40 (106)
T ss_dssp SBCHHHHHHHHH
T ss_pred CCCHHHHHHhHH
Confidence 799999765443
No 32
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=31.02 E-value=14 Score=27.37 Aligned_cols=13 Identities=31% Similarity=1.004 Sum_probs=9.4
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+.|......
T Consensus 28 ~~~C~~C~~~~~~ 40 (104)
T 2vim_A 28 AQWCGPCRNIAPK 40 (104)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHHHHHhhHH
Confidence 3799999765543
No 33
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*
Probab=30.70 E-value=22 Score=32.51 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=27.0
Q ss_pred CCCcccccCC------ceeEEEeccccc--cCcceEEccc
Q 016060 262 VDLGFHVDDS------EVTLNVCLGKQF--TGGELFFRGT 293 (396)
Q Consensus 262 ~~L~~H~D~S------evTLNI~Ln~dF--eGGgl~F~g~ 293 (396)
..+.+|.|.| .+++.-|+...= +||++.|...
T Consensus 96 ~~~~~HtD~sy~~~pp~~~~L~c~~~p~~~~GG~T~~~d~ 135 (273)
T 1nx8_A 96 GQLPFHADGGLLLSQVDQVFLYAAEIKNVKFRGATTVCDH 135 (273)
T ss_dssp SCEEEECTTTTTTCCCCEEEEEEEEEESCSSSSCEEEEEH
T ss_pred cCCCCcCCCCCccCCCeeEEEEeEeCCCCCCCCcchhhhH
Confidence 4788999998 799999997655 8999999863
No 34
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=29.28 E-value=1.2e+02 Score=23.78 Aligned_cols=39 Identities=8% Similarity=0.165 Sum_probs=26.5
Q ss_pred ecCCCceEEEecCCCCcCCccCCccc-eeEEEeechhhHHH
Q 016060 311 YSHVPGRAVLHRGRHRHGARATTSGH-RVNLLLWCRSSVFR 350 (396)
Q Consensus 311 y~~~~G~AlLHpGrh~HeglpVTsG~-RynLV~W~rss~~R 350 (396)
+...+|.+++.+....|......... ++ +++|+..+.+.
T Consensus 74 ~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~-~~i~f~~~~~~ 113 (128)
T 4i4a_A 74 FPVTKGDLIIIPLDSEHHVINNNQEDFHF-YTIWWDKESTL 113 (128)
T ss_dssp EEEETTCEEEECTTCCEEEEECSSSCEEE-EEEEECHHHHH
T ss_pred EEECCCcEEEECCCCcEEeEeCCCCCEEE-EEEEECHHHHH
Confidence 35688999999999999987765443 44 34455544443
No 35
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=29.00 E-value=16 Score=27.11 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=9.2
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+.|......
T Consensus 28 ~~C~~C~~~~~~ 39 (105)
T 1fb6_A 28 PWCGPCKLIAPV 39 (105)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCChHHHHHHHH
Confidence 799999765544
No 36
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=28.80 E-value=1.8e+02 Score=26.47 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=30.4
Q ss_pred eeEEEEeCC-CCCCCcccccCC------ceeEEEeccccccCcceEEcc
Q 016060 251 GFVVEYGKD-RDVDLGFHVDDS------EVTLNVCLGKQFTGGELFFRG 292 (396)
Q Consensus 251 ~FVVrY~~~-~d~~L~~H~D~S------evTLNI~Ln~dFeGGgl~F~g 292 (396)
.+++...++ ......+|.|.| .+++.-|+.-.=+||+|.|..
T Consensus 82 i~~v~~~~~~~~~~~~wHtD~sy~~~pp~~~~L~c~~~p~~GG~T~~~d 130 (283)
T 1otj_A 82 IIVLDTHNDNPPDNDNWHTDVTFIETPPAGAILAAKELPSTGGDTLWTS 130 (283)
T ss_dssp EEEEEEBTTBCCCCCSCBCTTTTSSSCEEEEEEEEEECCSSCCCEEEEE
T ss_pred EEEEeCCCCCCCcCCCcEeeccCccCCCceEEEEEEecCCCCCcceeee
Confidence 455655542 123457999998 689999997666899999975
No 37
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=28.42 E-value=15 Score=26.32 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=9.7
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 11 ~~~C~~C~~~~~~ 23 (85)
T 1fo5_A 11 SPMCPHCPAAKRV 23 (85)
T ss_dssp CCCSSCCCTHHHH
T ss_pred CCCCCchHHHHHH
Confidence 4899999776543
No 38
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=28.03 E-value=17 Score=28.81 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=9.9
Q ss_pred cccchhhhhhhHH
Q 016060 359 FSSWCGECFREKK 371 (396)
Q Consensus 359 f~~~c~~c~~~~~ 371 (396)
++.|||-|...+.
T Consensus 20 ~A~WC~~C~~~~p 32 (106)
T 3kp8_A 20 GAYWCPHCQDQKE 32 (106)
T ss_dssp ECTTCHHHHHHHH
T ss_pred ECCCCHHHHHHHH
Confidence 4689999977543
No 39
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=28.01 E-value=21 Score=27.52 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=9.3
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 27 ~wC~~C~~~~~~ 38 (112)
T 2voc_A 27 PWCGPSKMIAPV 38 (112)
T ss_dssp TTBGGGGGHHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999775544
No 40
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=27.96 E-value=17 Score=27.68 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=9.5
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 33 a~wC~~C~~~~~~ 45 (111)
T 2pu9_C 33 TQWCGPSKAMAPK 45 (111)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCcCHhHHHHCHH
Confidence 3799999765544
No 41
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=27.62 E-value=27 Score=25.96 Aligned_cols=12 Identities=25% Similarity=0.946 Sum_probs=9.0
Q ss_pred ccchhhhhhhHH
Q 016060 360 SSWCGECFREKK 371 (396)
Q Consensus 360 ~~~c~~c~~~~~ 371 (396)
+.||+.|.....
T Consensus 30 ~~~C~~C~~~~~ 41 (109)
T 3tco_A 30 AEWCAPCHLYEP 41 (109)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhhH
Confidence 479999976553
No 42
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=27.38 E-value=24 Score=26.47 Aligned_cols=11 Identities=36% Similarity=1.180 Sum_probs=8.3
Q ss_pred ccchhhhhhhH
Q 016060 360 SSWCGECFREK 370 (396)
Q Consensus 360 ~~~c~~c~~~~ 370 (396)
+.||+.|....
T Consensus 30 ~~~C~~C~~~~ 40 (111)
T 3uvt_A 30 APWCGHCKTLA 40 (111)
T ss_dssp CSSCHHHHHHH
T ss_pred CCCChhHHHhh
Confidence 38999996644
No 43
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=27.26 E-value=18 Score=26.50 Aligned_cols=11 Identities=27% Similarity=1.005 Sum_probs=8.6
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+.|.....
T Consensus 26 ~~C~~C~~~~~ 36 (104)
T 2e0q_A 26 EWCAPCLILAP 36 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCChhHHHHhH
Confidence 79999976544
No 44
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=27.18 E-value=18 Score=28.16 Aligned_cols=13 Identities=31% Similarity=1.007 Sum_probs=9.5
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 46 a~wC~~C~~~~~~ 58 (124)
T 1faa_A 46 TQWCGPCKAMAPK 58 (124)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCcCHhHHHHhHH
Confidence 3799999765544
No 45
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=26.37 E-value=20 Score=27.67 Aligned_cols=12 Identities=33% Similarity=1.057 Sum_probs=9.1
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 35 ~wC~~C~~~~p~ 46 (121)
T 2djj_A 35 PWCGHCKALAPK 46 (121)
T ss_dssp SSCTTHHHHHHH
T ss_pred CCCHhHHHhhHH
Confidence 799999765543
No 46
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=26.34 E-value=19 Score=26.85 Aligned_cols=12 Identities=33% Similarity=0.960 Sum_probs=9.0
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 27 ~~C~~C~~~~~~ 38 (105)
T 1nsw_A 27 AWCGPCRMMAPV 38 (105)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999765543
No 47
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=26.05 E-value=26 Score=26.01 Aligned_cols=13 Identities=38% Similarity=0.945 Sum_probs=9.4
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+.|......
T Consensus 29 ~~~C~~C~~~~~~ 41 (105)
T 3m9j_A 29 ATWCGPCKMIKPF 41 (105)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCChhhHHHHHH
Confidence 3799999765543
No 48
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=25.86 E-value=20 Score=27.35 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=7.1
Q ss_pred ccchhhhhhhHH
Q 016060 360 SSWCGECFREKK 371 (396)
Q Consensus 360 ~~~c~~c~~~~~ 371 (396)
+.||+-|.....
T Consensus 30 a~wC~~C~~~~~ 41 (112)
T 3d6i_A 30 TSWAEPCKALKQ 41 (112)
T ss_dssp CCC--CHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 489999976554
No 49
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=25.73 E-value=20 Score=26.90 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=9.0
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 30 ~~C~~C~~~~~~ 41 (108)
T 2trx_A 30 EWCGPCKMIAPI 41 (108)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHhHHHHHHH
Confidence 799999765443
No 50
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=25.70 E-value=20 Score=27.09 Aligned_cols=13 Identities=31% Similarity=0.882 Sum_probs=9.5
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+.|......
T Consensus 33 ~~~C~~C~~~~~~ 45 (112)
T 1ep7_A 33 ATWCGPCKMIAPL 45 (112)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4799999765543
No 51
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=25.48 E-value=21 Score=26.55 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=8.9
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+.|......
T Consensus 28 ~~C~~C~~~~~~ 39 (109)
T 2yzu_A 28 EWCAPCRMIAPI 39 (109)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHhhHH
Confidence 799999765443
No 52
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=25.33 E-value=21 Score=26.55 Aligned_cols=13 Identities=31% Similarity=0.997 Sum_probs=9.4
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+.|......
T Consensus 29 ~~~C~~C~~~~~~ 41 (106)
T 1xwb_A 29 ATWCGPCKMISPK 41 (106)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCcCHHHHHhhHH
Confidence 4799999765443
No 53
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=25.27 E-value=21 Score=27.59 Aligned_cols=13 Identities=31% Similarity=0.920 Sum_probs=9.5
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 42 a~wC~~C~~~~~~ 54 (117)
T 2xc2_A 42 ATWCGPCKTIAPL 54 (117)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHhHHHHhHH
Confidence 4899999765543
No 54
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=25.24 E-value=38 Score=26.74 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=9.1
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 52 ~wC~~C~~~~p~ 63 (128)
T 3ul3_B 52 KWCQACTMQSTE 63 (128)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHhHH
Confidence 799999765544
No 55
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=25.16 E-value=21 Score=26.75 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=9.0
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 29 ~~C~~C~~~~~~ 40 (107)
T 1dby_A 29 PWCGPCRIIAPV 40 (107)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHhHHHHHHH
Confidence 799999765443
No 56
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=25.11 E-value=21 Score=27.07 Aligned_cols=12 Identities=33% Similarity=1.088 Sum_probs=8.9
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 33 ~~C~~C~~~~~~ 44 (112)
T 1t00_A 33 AWCGPCRQIAPS 44 (112)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHhHHhcCHH
Confidence 799999765443
No 57
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=25.05 E-value=21 Score=27.49 Aligned_cols=11 Identities=36% Similarity=1.057 Sum_probs=8.5
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 35 ~~C~~C~~~~~ 45 (136)
T 1zzo_A 35 PWCPTCQGEAP 45 (136)
T ss_dssp TTCHHHHHHHH
T ss_pred CCChhHHHHHH
Confidence 79999976544
No 58
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=24.95 E-value=20 Score=27.19 Aligned_cols=12 Identities=42% Similarity=1.124 Sum_probs=9.2
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 34 ~~C~~C~~~~~~ 45 (120)
T 1mek_A 34 PWCGHCKALAPE 45 (120)
T ss_dssp SSCSTTSTTHHH
T ss_pred CCCHHHHHhhHH
Confidence 799999775544
No 59
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=24.70 E-value=22 Score=27.82 Aligned_cols=13 Identities=46% Similarity=1.186 Sum_probs=9.5
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 36 a~wC~~C~~~~~~ 48 (130)
T 2kuc_A 36 TTWCGPCKRLSKV 48 (130)
T ss_dssp CTTCTHHHHHHHH
T ss_pred CCCCccHHHHHHH
Confidence 3899999775543
No 60
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=24.46 E-value=23 Score=26.78 Aligned_cols=12 Identities=42% Similarity=0.983 Sum_probs=8.9
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 35 ~~C~~C~~~~~~ 46 (115)
T 1thx_A 35 SWCGPCQLMSPL 46 (115)
T ss_dssp TTCTTHHHHHHH
T ss_pred CCCHHHHHhHHH
Confidence 799999765443
No 61
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=24.28 E-value=29 Score=26.29 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=8.5
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 28 ~wC~~C~~~~p 38 (105)
T 4euy_A 28 ENCGVCDVMLR 38 (105)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCcchHHHHH
Confidence 79999976543
No 62
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=24.11 E-value=34 Score=26.28 Aligned_cols=12 Identities=33% Similarity=0.947 Sum_probs=9.0
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 34 ~wC~~C~~~~p~ 45 (109)
T 3f3q_A 34 TWCGPCKMIAPM 45 (109)
T ss_dssp TTCHHHHHHHHH
T ss_pred CcCHhHHHHHHH
Confidence 799999765543
No 63
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=24.04 E-value=23 Score=27.22 Aligned_cols=13 Identities=38% Similarity=0.984 Sum_probs=9.5
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 35 a~~C~~C~~~~~~ 47 (112)
T 1syr_A 35 AEWCGPCKRIAPF 47 (112)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3799999765544
No 64
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=23.92 E-value=21 Score=26.15 Aligned_cols=12 Identities=17% Similarity=0.528 Sum_probs=9.3
Q ss_pred ccchhhhhhhHH
Q 016060 360 SSWCGECFREKK 371 (396)
Q Consensus 360 ~~~c~~c~~~~~ 371 (396)
+.|||-|.+.+.
T Consensus 9 ~~~C~~C~~~~~ 20 (80)
T 2k8s_A 9 HAGCPVCVSAEQ 20 (80)
T ss_dssp ECSCHHHHHHHH
T ss_pred CCCCCchHHHHH
Confidence 489999977554
No 65
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=23.75 E-value=23 Score=27.44 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=9.0
Q ss_pred ccchhhhhhhHH
Q 016060 360 SSWCGECFREKK 371 (396)
Q Consensus 360 ~~~c~~c~~~~~ 371 (396)
+.|||-|.....
T Consensus 38 a~wC~~C~~~~p 49 (118)
T 1zma_A 38 RKTCPYCRKFAG 49 (118)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCccHHHHHH
Confidence 489999976543
No 66
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=23.48 E-value=23 Score=27.38 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=8.4
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 34 ~~C~~C~~~~~ 44 (136)
T 1lu4_A 34 PWCPFCNAEAP 44 (136)
T ss_dssp TTCHHHHHHHH
T ss_pred CcChhHHHHHH
Confidence 79999976443
No 67
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.35 E-value=26 Score=27.44 Aligned_cols=12 Identities=50% Similarity=1.304 Sum_probs=9.2
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 45 ~wC~~C~~~~~~ 56 (130)
T 2dml_A 45 PWCGHCQRLTPE 56 (130)
T ss_dssp TTCSTTGGGHHH
T ss_pred CCCHHHHhhCHH
Confidence 799999775544
No 68
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.35 E-value=23 Score=27.66 Aligned_cols=12 Identities=33% Similarity=0.983 Sum_probs=9.2
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 32 ~wC~~C~~~~p~ 43 (126)
T 1x5e_A 32 PWCPACQNLQPE 43 (126)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHhHH
Confidence 799999775544
No 69
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=23.12 E-value=24 Score=27.53 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.5
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 41 ~~C~~C~~~~~ 51 (119)
T 1w4v_A 41 QWCGPCKILGP 51 (119)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 79999976544
No 70
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=23.09 E-value=32 Score=25.81 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=8.4
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 32 ~~C~~C~~~~~ 42 (111)
T 3gnj_A 32 KNCHVCQKVTP 42 (111)
T ss_dssp SSCHHHHHHHH
T ss_pred CCChhHHHHHH
Confidence 79999976543
No 71
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=22.95 E-value=43 Score=24.76 Aligned_cols=12 Identities=33% Similarity=0.947 Sum_probs=8.9
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 30 ~~C~~C~~~~~~ 41 (107)
T 2i4a_A 30 EWCGPCKMIGPA 41 (107)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCChhHHHHhHH
Confidence 799999765443
No 72
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=22.95 E-value=24 Score=27.52 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.0
Q ss_pred ccchhhhhhhHH
Q 016060 360 SSWCGECFREKK 371 (396)
Q Consensus 360 ~~~c~~c~~~~~ 371 (396)
+.||+-|.....
T Consensus 40 a~wC~~C~~~~p 51 (116)
T 3qfa_C 40 ATWCGPSKMIKP 51 (116)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 479999976544
No 73
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=22.92 E-value=24 Score=27.68 Aligned_cols=13 Identities=38% Similarity=1.099 Sum_probs=9.3
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 32 a~wC~~C~~~~~~ 44 (118)
T 2f51_A 32 ATWCGPCQRLGQI 44 (118)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4799999765443
No 74
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=22.88 E-value=37 Score=25.57 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=9.4
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 30 a~wC~~C~~~~~~ 42 (107)
T 1gh2_A 30 MRGCGPCLRIAPA 42 (107)
T ss_dssp CSSCHHHHHHHHH
T ss_pred CCCChhhHHHHHH
Confidence 4899999765543
No 75
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=22.69 E-value=25 Score=27.14 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=8.7
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 29 ~wC~~C~~~~~ 39 (110)
T 2l6c_A 29 NLCPHCKNMEK 39 (110)
T ss_dssp SSCSTHHHHHH
T ss_pred CCCHhHHHHHH
Confidence 79999977544
No 76
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=22.67 E-value=25 Score=28.42 Aligned_cols=12 Identities=33% Similarity=1.021 Sum_probs=9.1
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+.|.....+
T Consensus 44 ~~C~~C~~~~~~ 55 (165)
T 3or5_A 44 TWCPPCRSEIPD 55 (165)
T ss_dssp TTSHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 799999775544
No 77
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=22.31 E-value=1.5e+02 Score=22.61 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=23.8
Q ss_pred cCCCceEEEecCCCCcCCccCCccceeEEEee
Q 016060 312 SHVPGRAVLHRGRHRHGARATTSGHRVNLLLW 343 (396)
Q Consensus 312 ~~~~G~AlLHpGrh~HeglpVTsG~RynLV~W 343 (396)
...+|.+++.+....|...... ..++.+|.+
T Consensus 81 ~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~v~~ 111 (115)
T 1yhf_A 81 RVAEGQTIVMPAGIPHALYAVE-AFQMLLVVV 111 (115)
T ss_dssp EEETTCEEEECTTSCEEEEESS-CEEEEEEEE
T ss_pred EECCCCEEEECCCCCEEEEECC-CceEEEEEE
Confidence 4688999999999999988765 556655543
No 78
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=22.17 E-value=26 Score=27.70 Aligned_cols=13 Identities=31% Similarity=0.976 Sum_probs=9.8
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 38 a~wC~~C~~~~~~ 50 (133)
T 3fk8_A 38 ANWCTDCRALDKS 50 (133)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4899999776543
No 79
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=22.16 E-value=26 Score=26.73 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=8.2
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 32 ~~C~~C~~~~~ 42 (138)
T 4evm_A 32 SWCSICLASLP 42 (138)
T ss_dssp TTCHHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 89999965443
No 80
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=22.09 E-value=25 Score=27.52 Aligned_cols=12 Identities=33% Similarity=1.085 Sum_probs=9.4
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 40 ~wC~~C~~~~p~ 51 (114)
T 2oe3_A 40 TWCGPCKMMQPH 51 (114)
T ss_dssp TTCHHHHHTHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999776544
No 81
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=22.04 E-value=2.2e+02 Score=22.40 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=24.5
Q ss_pred ecCCCceEEEecCCCCcCCccCCcc--ceeEEEee
Q 016060 311 YSHVPGRAVLHRGRHRHGARATTSG--HRVNLLLW 343 (396)
Q Consensus 311 y~~~~G~AlLHpGrh~HeglpVTsG--~RynLV~W 343 (396)
+...+|..++.|....|....++.. ..|+.|.|
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~~l~v~~ 109 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTDGGEPTVWLAVHC 109 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred EEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEE
Confidence 3578999999999999998877754 34444443
No 82
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=22.03 E-value=27 Score=27.84 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=8.5
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 61 ~wC~~C~~~~~ 71 (141)
T 3hxs_A 61 DWCGPCKMVAP 71 (141)
T ss_dssp TTCTTHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 79999976543
No 83
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=21.90 E-value=26 Score=27.48 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=8.6
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+.|.....
T Consensus 43 ~~C~~C~~~~~ 53 (121)
T 2j23_A 43 TWCGPCKMIGP 53 (121)
T ss_dssp TTCSTHHHHHH
T ss_pred CCCHhHHHHHH
Confidence 79999976544
No 84
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=21.89 E-value=26 Score=26.38 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=8.9
Q ss_pred ccchhhhhhhHH
Q 016060 360 SSWCGECFREKK 371 (396)
Q Consensus 360 ~~~c~~c~~~~~ 371 (396)
+.||+.|.....
T Consensus 35 ~~~C~~C~~~~~ 46 (113)
T 1ti3_A 35 ASWCPPCKMIAP 46 (113)
T ss_dssp CSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 479999976543
No 85
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=21.87 E-value=26 Score=27.98 Aligned_cols=10 Identities=50% Similarity=1.278 Sum_probs=7.8
Q ss_pred cchhhhhhhH
Q 016060 361 SWCGECFREK 370 (396)
Q Consensus 361 ~~c~~c~~~~ 370 (396)
.||+-|....
T Consensus 52 ~~C~~C~~~~ 61 (156)
T 1kng_A 52 SWCVPCHDEA 61 (156)
T ss_dssp TTCHHHHHHH
T ss_pred ccCHhHHHHH
Confidence 7999996543
No 86
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=21.83 E-value=26 Score=28.06 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=9.1
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 48 ~wC~~C~~~~~~ 59 (136)
T 2l5l_A 48 DWCGPCKMVAPI 59 (136)
T ss_dssp TTSHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 799999775543
No 87
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=21.71 E-value=27 Score=28.05 Aligned_cols=11 Identities=27% Similarity=0.906 Sum_probs=8.4
Q ss_pred ccchhhhhhhH
Q 016060 360 SSWCGECFREK 370 (396)
Q Consensus 360 ~~~c~~c~~~~ 370 (396)
+.||+-|....
T Consensus 40 a~wC~~C~~~~ 50 (134)
T 2fwh_A 40 ADWCVACKEFE 50 (134)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 47999997643
No 88
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=21.70 E-value=27 Score=27.31 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=8.4
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 44 ~~C~~C~~~~~ 54 (145)
T 3erw_A 44 SWCPPCKKELP 54 (145)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 79999976543
No 89
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=21.70 E-value=27 Score=27.34 Aligned_cols=12 Identities=33% Similarity=0.626 Sum_probs=9.0
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 36 ~wC~~C~~~~~~ 47 (126)
T 2l57_A 36 DTCPYCVEMQKE 47 (126)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCccHHHHHHH
Confidence 799999765443
No 90
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=21.69 E-value=42 Score=25.82 Aligned_cols=12 Identities=42% Similarity=1.113 Sum_probs=9.0
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 31 ~~C~~C~~~~~~ 42 (122)
T 3aps_A 31 PWCGPCQNFAPE 42 (122)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 799999765543
No 91
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=21.54 E-value=29 Score=27.66 Aligned_cols=11 Identities=45% Similarity=1.256 Sum_probs=8.5
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 40 ~~C~~C~~~~~ 50 (152)
T 2lja_A 40 TWCGPCRGELP 50 (152)
T ss_dssp SSCCGGGGTHH
T ss_pred CcCHhHHHHhH
Confidence 79999976544
No 92
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=21.41 E-value=27 Score=26.93 Aligned_cols=12 Identities=42% Similarity=1.054 Sum_probs=9.0
Q ss_pred ccchhhhhhhHH
Q 016060 360 SSWCGECFREKK 371 (396)
Q Consensus 360 ~~~c~~c~~~~~ 371 (396)
+.||+-|.....
T Consensus 43 ~~~C~~C~~~~~ 54 (122)
T 2vlu_A 43 ASWCGPCRIMAP 54 (122)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 479999976544
No 93
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.28 E-value=28 Score=27.36 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=9.1
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 35 ~wC~~C~~~~p~ 46 (133)
T 2dj3_A 35 PWCGHCKQLEPI 46 (133)
T ss_dssp TTCSHHHHHHHH
T ss_pred CCChhHHHHHHH
Confidence 799999775544
No 94
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=21.21 E-value=26 Score=27.02 Aligned_cols=11 Identities=45% Similarity=1.117 Sum_probs=8.6
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.|||-|...+.
T Consensus 28 ~~C~~C~~~~~ 38 (116)
T 2e7p_A 28 TYCGYCNRVKQ 38 (116)
T ss_dssp TTCHHHHHHHH
T ss_pred CCChhHHHHHH
Confidence 79999976544
No 95
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=21.16 E-value=28 Score=27.32 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=9.1
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 41 ~~C~~C~~~~~~ 52 (148)
T 3hcz_A 41 SQCGHCQQETPK 52 (148)
T ss_dssp GGGCTTCSHHHH
T ss_pred CCCccHHHHHHH
Confidence 799999775543
No 96
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=26.58 E-value=20 Score=26.35 Aligned_cols=11 Identities=36% Similarity=1.063 Sum_probs=8.5
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+.|.....
T Consensus 29 ~~C~~C~~~~~ 39 (106)
T 2yj7_A 29 PWCGPCRMIAP 39 (106)
Confidence 79999976543
No 97
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=21.04 E-value=28 Score=27.27 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=8.2
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 39 ~~C~~C~~~~~ 49 (148)
T 2b5x_A 39 ISCHLCKEAMP 49 (148)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHhH
Confidence 79999966443
No 98
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=20.64 E-value=30 Score=27.15 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=8.4
Q ss_pred cchhhhhhhHH
Q 016060 361 SWCGECFREKK 371 (396)
Q Consensus 361 ~~c~~c~~~~~ 371 (396)
.||+-|.....
T Consensus 43 ~~C~~C~~~~~ 53 (148)
T 3fkf_A 43 SWCDPQPEANA 53 (148)
T ss_dssp GGGCCCHHHHH
T ss_pred CCCHHHHHHhH
Confidence 79999976543
No 99
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=20.58 E-value=43 Score=26.52 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=10.2
Q ss_pred cccchhhhhhhHHH
Q 016060 359 FSSWCGECFREKKE 372 (396)
Q Consensus 359 f~~~c~~c~~~~~~ 372 (396)
++.||+-|......
T Consensus 46 ~a~wC~~C~~~~~~ 59 (124)
T 1xfl_A 46 TASWCGPCRFIAPF 59 (124)
T ss_dssp ECTTCHHHHHHHHH
T ss_pred ECCCCHHHHHHHHH
Confidence 35899999775543
No 100
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=20.51 E-value=44 Score=25.28 Aligned_cols=13 Identities=38% Similarity=0.917 Sum_probs=9.4
Q ss_pred ccchhhhhhhHHH
Q 016060 360 SSWCGECFREKKE 372 (396)
Q Consensus 360 ~~~c~~c~~~~~~ 372 (396)
+.||+-|......
T Consensus 37 ~~~C~~C~~~~~~ 49 (118)
T 2vm1_A 37 ASWCGPCRVIAPV 49 (118)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCHhHHHHhHH
Confidence 4799999765543
No 101
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=20.49 E-value=29 Score=27.95 Aligned_cols=12 Identities=42% Similarity=1.273 Sum_probs=8.9
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|.....+
T Consensus 34 ~wC~~C~~~~~~ 45 (151)
T 3raz_A 34 TWCGPCRKEMPA 45 (151)
T ss_dssp TTCHHHHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 799999765443
No 102
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=20.49 E-value=46 Score=26.93 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=15.0
Q ss_pred ccceeEEEeechhhHHHHHHhhhhccccchhhhhhh
Q 016060 334 SGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFRE 369 (396)
Q Consensus 334 sG~RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~ 369 (396)
.|.++++|.|.+ +.||+-|..+
T Consensus 34 ~gk~~vvl~F~~--------------a~~C~~C~~~ 55 (160)
T 1xvw_A 34 RGAKNVLLVFFP--------------LAFTGICQGE 55 (160)
T ss_dssp TTTCEEEEEECS--------------CTTSSHHHHH
T ss_pred cCCCCEEEEEEC--------------CCCCCchHHH
Confidence 576677766653 2799999653
No 103
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.46 E-value=50 Score=25.64 Aligned_cols=12 Identities=42% Similarity=1.193 Sum_probs=9.1
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 35 ~wC~~C~~~~~~ 46 (133)
T 1x5d_A 35 PWCGHCKNLEPE 46 (133)
T ss_dssp TTCHHHHTHHHH
T ss_pred CCCHHHHhhcHH
Confidence 799999765543
No 104
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.31 E-value=28 Score=27.54 Aligned_cols=12 Identities=42% Similarity=1.151 Sum_probs=9.1
Q ss_pred cchhhhhhhHHH
Q 016060 361 SWCGECFREKKE 372 (396)
Q Consensus 361 ~~c~~c~~~~~~ 372 (396)
.||+-|......
T Consensus 44 ~wC~~C~~~~p~ 55 (140)
T 2dj1_A 44 PWCGHCKQFAPE 55 (140)
T ss_dssp TTCHHHHTTHHH
T ss_pred CCCHHHHHhhHH
Confidence 799999775543
No 105
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=20.18 E-value=25 Score=27.74 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=8.2
Q ss_pred cchhhhhhhH
Q 016060 361 SWCGECFREK 370 (396)
Q Consensus 361 ~~c~~c~~~~ 370 (396)
.||+-|....
T Consensus 37 ~~C~~C~~~~ 46 (142)
T 3ewl_A 37 PDCSNCRKFE 46 (142)
T ss_dssp SSCHHHHHHH
T ss_pred CCCccHHHHH
Confidence 7999998763
No 106
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=20.12 E-value=45 Score=27.69 Aligned_cols=30 Identities=27% Similarity=0.519 Sum_probs=12.8
Q ss_pred CCcCCccCCccceeEEEeechhhHHHHHHhhhhccccchhhhhhhH
Q 016060 325 HRHGARATTSGHRVNLLLWCRSSVFREMKRYQKDFSSWCGECFREK 370 (396)
Q Consensus 325 h~HeglpVTsG~RynLV~W~rss~~R~~~~y~~~f~~~c~~c~~~~ 370 (396)
|-||...-.+.. ..||.|-. .||+-|.+-.
T Consensus 8 ~~~~~~~~~~~~-~~LV~F~A---------------~wC~~Ck~~~ 37 (116)
T 3dml_A 8 HHHGSDDDDKAE-LRLLMFEQ---------------PGCLYCARWD 37 (116)
T ss_dssp -----------C-EEEEEEEC---------------TTCHHHHHHH
T ss_pred cccCCCccccCC-CEEEEEEC---------------CCCHHHHHHH
Confidence 345555444443 45666543 7999998643
Done!