Query 016061
Match_columns 396
No_of_seqs 132 out of 1648
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:26:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10655 potE putrescine trans 100.0 1.7E-50 3.6E-55 396.6 35.8 364 16-382 3-388 (438)
2 PRK11387 S-methylmethionine tr 100.0 4.7E-50 1E-54 396.2 36.2 329 13-346 8-353 (471)
3 PRK10249 phenylalanine transpo 100.0 6.9E-50 1.5E-54 393.2 36.3 379 1-385 1-412 (458)
4 KOG1287 Amino acid transporter 100.0 1.2E-50 2.5E-55 382.8 29.3 370 14-385 7-399 (479)
5 PRK10644 arginine:agmatin anti 100.0 1.5E-49 3.2E-54 390.3 36.8 363 14-379 3-387 (445)
6 PRK11357 frlA putative fructos 100.0 2.6E-49 5.6E-54 388.8 37.6 368 14-384 3-391 (445)
7 TIGR00906 2A0303 cationic amin 100.0 1.8E-49 3.9E-54 396.7 36.7 344 13-359 22-392 (557)
8 PRK15049 L-asparagine permease 100.0 3.6E-49 7.8E-54 391.0 37.2 367 15-385 24-424 (499)
9 TIGR00909 2A0306 amino acid tr 100.0 3.5E-49 7.6E-54 386.6 35.5 366 17-386 1-392 (429)
10 TIGR00908 2A0305 ethanolamine 100.0 5.8E-49 1.3E-53 386.2 36.9 364 14-383 2-386 (442)
11 PRK10836 lysine transporter; P 100.0 2.5E-48 5.4E-53 385.4 35.8 372 14-390 10-424 (489)
12 TIGR00905 2A0302 transporter, 100.0 4E-48 8.7E-53 382.6 35.2 342 16-359 4-365 (473)
13 PRK10435 cadB lysine/cadaverin 100.0 4.3E-48 9.2E-53 378.6 34.7 325 16-344 2-332 (435)
14 PRK10238 aromatic amino acid t 100.0 6.5E-48 1.4E-52 379.0 36.0 340 14-359 7-367 (456)
15 PRK10746 putative transport pr 100.0 1.2E-47 2.7E-52 377.0 36.4 369 15-389 6-409 (461)
16 TIGR00911 2A0308 L-type amino 100.0 8.9E-47 1.9E-51 375.9 37.2 367 14-382 37-427 (501)
17 TIGR01773 GABAperm gamma-amino 100.0 8.3E-47 1.8E-51 371.8 36.2 327 14-346 7-349 (452)
18 PRK11049 D-alanine/D-serine/gl 100.0 7.7E-47 1.7E-51 372.9 35.7 367 14-386 15-417 (469)
19 PRK10580 proY putative proline 100.0 2.7E-46 6E-51 368.2 36.0 366 14-385 4-403 (457)
20 TIGR00913 2A0310 amino acid pe 100.0 3.3E-46 7.2E-51 370.2 34.9 363 18-385 1-412 (478)
21 PRK11021 putative transporter; 100.0 1.9E-45 4E-50 357.8 37.2 335 21-361 1-345 (410)
22 TIGR03810 arg_ornith_anti argi 100.0 2E-45 4.3E-50 363.0 36.0 339 19-359 1-361 (468)
23 PRK10197 gamma-aminobutyrate t 100.0 1.9E-45 4.1E-50 360.6 33.8 354 29-388 2-388 (446)
24 TIGR03428 ureacarb_perm permea 100.0 4.5E-43 9.8E-48 346.8 35.8 369 13-385 7-423 (475)
25 PF13520 AA_permease_2: Amino 100.0 5.7E-43 1.2E-47 342.7 34.0 356 21-381 1-387 (426)
26 COG1113 AnsP Gamma-aminobutyra 100.0 6.2E-43 1.3E-47 325.1 29.8 364 14-384 8-405 (462)
27 TIGR00907 2A0304 amino acid pe 100.0 2E-42 4.3E-47 343.4 33.7 369 13-382 6-420 (482)
28 TIGR03813 put_Glu_GABA_T putat 100.0 9.5E-42 2E-46 337.5 38.3 360 19-382 1-397 (474)
29 COG0833 LysP Amino acid transp 100.0 2.1E-42 4.6E-47 327.9 30.0 374 16-394 41-457 (541)
30 COG0531 PotE Amino acid transp 100.0 2.4E-41 5.3E-46 334.9 36.0 369 13-384 6-403 (466)
31 TIGR00930 2a30 K-Cl cotranspor 100.0 4.9E-41 1.1E-45 349.9 35.1 349 14-363 71-471 (953)
32 TIGR00910 2A0307_GadC glutamat 100.0 2.7E-40 5.9E-45 328.0 37.3 361 17-382 2-400 (507)
33 KOG1286 Amino acid transporter 100.0 1.9E-41 4.2E-46 332.4 24.2 343 14-359 25-404 (554)
34 PRK15238 inner membrane transp 100.0 3.5E-38 7.5E-43 313.5 38.5 360 17-381 5-432 (496)
35 KOG1289 Amino acid transporter 100.0 4.1E-38 8.8E-43 298.1 26.7 343 14-359 43-425 (550)
36 PF00324 AA_permease: Amino ac 100.0 1E-39 2.2E-44 323.6 4.0 318 27-346 3-353 (478)
37 TIGR00837 araaP aromatic amino 100.0 1.8E-28 4E-33 236.4 26.1 308 27-346 3-323 (381)
38 TIGR00912 2A0309 spore germina 99.9 1.2E-23 2.7E-28 201.2 31.2 282 19-309 1-292 (359)
39 TIGR00796 livcs branched-chain 99.9 1.8E-20 4E-25 177.0 33.3 337 31-390 5-374 (378)
40 PF03222 Trp_Tyr_perm: Tryptop 99.9 7.6E-19 1.6E-23 168.5 32.9 291 19-311 1-303 (394)
41 KOG2082 K+/Cl- cotransporter K 99.9 1.7E-20 3.8E-25 181.4 21.2 362 15-379 108-604 (1075)
42 TIGR00814 stp serine transport 99.9 3E-19 6.5E-24 171.0 26.9 284 25-314 7-312 (397)
43 PHA02764 hypothetical protein; 99.8 2.1E-19 4.5E-24 158.8 21.2 275 12-332 5-285 (399)
44 PRK10483 tryptophan permease; 99.8 4.4E-18 9.4E-23 161.9 30.1 295 16-312 6-312 (414)
45 PRK09664 tryptophan permease T 99.8 2.2E-17 4.7E-22 157.0 29.2 288 22-311 10-312 (415)
46 PRK15132 tyrosine transporter 99.8 3.2E-17 7E-22 156.6 30.4 290 22-313 4-302 (403)
47 COG0814 SdaC Amino acid permea 99.8 2E-16 4.4E-21 152.9 31.2 286 16-303 4-305 (415)
48 KOG1288 Amino acid transporter 99.8 2.6E-18 5.7E-23 165.2 17.0 340 18-364 64-457 (945)
49 PRK13629 threonine/serine tran 99.8 1.7E-16 3.7E-21 151.0 27.9 286 27-314 25-347 (443)
50 PF03845 Spore_permease: Spore 99.8 3.6E-16 7.8E-21 147.1 28.7 280 20-310 1-289 (320)
51 KOG2083 Na+/K+ symporter [Inor 99.7 1E-15 2.2E-20 146.4 16.1 343 14-358 23-395 (643)
52 COG3949 Uncharacterized membra 99.5 1.5E-11 3.2E-16 110.9 28.0 308 26-359 8-321 (349)
53 PF01235 Na_Ala_symp: Sodium:a 99.5 5.5E-12 1.2E-16 119.8 25.0 289 14-313 12-338 (416)
54 KOG1303 Amino acid transporter 99.5 2E-11 4.3E-16 117.6 24.3 272 16-299 33-321 (437)
55 TIGR00835 agcS amino acid carr 99.4 1.7E-10 3.7E-15 110.3 28.2 283 18-312 44-364 (425)
56 COG1115 AlsT Na+/alanine sympo 99.4 7.2E-11 1.6E-15 111.0 24.9 286 16-313 58-382 (452)
57 PF05525 Branch_AA_trans: Bran 99.1 2.3E-07 5.1E-12 89.0 31.1 339 29-389 11-379 (427)
58 KOG1304 Amino acid transporter 99.1 1.2E-07 2.7E-12 90.4 25.4 240 18-262 44-306 (449)
59 PTZ00206 amino acid transporte 99.1 2.1E-07 4.5E-12 92.0 27.7 235 24-261 63-319 (467)
60 PLN03074 auxin influx permease 99.1 2.1E-07 4.5E-12 91.8 27.2 235 19-261 44-294 (473)
61 PRK15433 branched-chain amino 99.0 1.3E-06 2.8E-11 83.9 29.1 335 29-390 16-383 (439)
62 PF01490 Aa_trans: Transmembra 99.0 2E-11 4.4E-16 119.0 -4.9 241 19-261 1-256 (409)
63 PRK11375 allantoin permease; P 98.9 1.7E-06 3.7E-11 85.8 29.3 317 12-346 18-362 (484)
64 COG1114 BrnQ Branched-chain am 98.9 3.8E-06 8.2E-11 78.8 28.5 346 24-392 8-384 (431)
65 TIGR02119 panF sodium/pantothe 98.8 1.9E-05 4.1E-10 78.5 31.4 282 17-308 38-345 (471)
66 TIGR00813 sss transporter, SSS 98.8 1.4E-05 3.1E-10 77.9 30.0 282 18-308 2-321 (407)
67 COG1457 CodB Purine-cytosine p 98.8 3.6E-05 7.7E-10 74.1 29.8 168 54-229 54-224 (442)
68 TIGR00800 ncs1 NCS1 nucleoside 98.7 8.6E-05 1.9E-09 73.1 31.2 238 13-255 6-263 (442)
69 PRK09442 panF sodium/panthothe 98.6 0.00017 3.7E-09 71.9 31.8 281 17-307 39-345 (483)
70 PRK11017 codB cytosine permeas 98.6 0.00024 5.2E-09 69.1 31.6 221 15-246 5-230 (404)
71 TIGR02358 thia_cytX probable h 98.5 0.0007 1.5E-08 65.4 31.9 202 52-259 29-232 (386)
72 TIGR02121 Na_Pro_sym sodium/pr 98.5 0.00058 1.3E-08 68.2 32.4 278 18-308 35-345 (487)
73 PF00474 SSF: Sodium:solute sy 98.5 2.1E-05 4.7E-10 76.6 20.6 286 18-317 5-325 (406)
74 COG0591 PutP Na+/proline sympo 98.4 0.0013 2.8E-08 65.7 31.0 283 16-308 35-352 (493)
75 KOG1305 Amino acid transporter 98.4 3.2E-05 6.9E-10 74.5 18.4 242 17-262 2-258 (411)
76 PRK15419 proline:sodium sympor 98.3 0.0022 4.7E-08 64.3 31.5 150 17-175 38-198 (502)
77 PRK12488 acetate permease; Pro 98.3 0.0017 3.6E-08 65.8 30.3 152 17-178 65-221 (549)
78 TIGR02711 symport_actP cation/ 98.3 0.0037 8.1E-08 63.3 30.8 226 17-253 65-314 (549)
79 PRK09395 actP acetate permease 98.2 0.0074 1.6E-07 61.2 31.9 152 17-176 67-221 (551)
80 PRK10484 putative transporter; 98.2 0.011 2.3E-07 59.7 32.4 286 17-308 36-354 (523)
81 COG1953 FUI1 Cytosine/uracil/t 98.1 0.0073 1.6E-07 58.7 27.8 315 14-346 34-376 (497)
82 PF01566 Nramp: Natural resist 98.0 0.011 2.4E-07 56.5 27.4 240 67-313 23-285 (358)
83 COG0733 Na+-dependent transpor 98.0 0.016 3.5E-07 55.6 28.9 271 24-301 12-323 (439)
84 TIGR03648 Na_symport_lg probab 97.9 0.023 4.9E-07 57.8 29.1 146 17-172 30-180 (552)
85 COG1914 MntH Mn2+ and Fe2+ tra 97.8 0.039 8.4E-07 53.4 28.6 62 69-130 60-123 (416)
86 PF02133 Transp_cyt_pur: Perme 97.8 0.002 4.2E-08 63.6 18.6 235 15-253 3-255 (440)
87 COG4147 DhlC Predicted symport 97.8 0.042 9.2E-07 52.9 26.3 307 39-358 63-420 (529)
88 PRK00701 manganese transport p 97.5 0.11 2.3E-06 51.1 31.0 64 67-130 75-140 (439)
89 COG4145 PanF Na+/panthothenate 97.5 0.064 1.4E-06 50.1 21.9 272 17-303 37-339 (473)
90 PF02705 K_trans: K+ potassium 97.3 0.019 4.2E-07 56.8 17.6 243 102-359 98-358 (534)
91 PLN00148 potassium transporter 96.0 0.09 1.9E-06 54.2 11.8 244 102-359 162-424 (785)
92 TIGR00794 kup potassium uptake 95.9 0.1 2.2E-06 53.3 11.9 242 104-359 135-395 (688)
93 PF02028 BCCT: BCCT family tra 95.9 2.1 4.5E-05 42.6 28.5 295 15-316 69-424 (485)
94 PRK10745 trkD potassium transp 95.8 0.11 2.3E-06 52.3 11.5 246 99-359 106-369 (622)
95 PLN00149 potassium transporter 95.6 0.42 9.2E-06 49.5 14.9 242 107-359 167-428 (779)
96 PLN00150 potassium ion transpo 95.4 0.1 2.2E-06 53.7 9.7 236 109-359 186-441 (779)
97 PLN00151 potassium transporter 95.3 0.09 1.9E-06 54.3 9.1 239 106-359 243-501 (852)
98 KOG4303 Vesicular inhibitory a 95.2 0.041 8.9E-07 50.7 5.7 235 15-257 111-359 (524)
99 PF02554 CstA: Carbon starvati 94.5 4.6 9.9E-05 38.3 20.7 103 20-125 51-155 (376)
100 PF00209 SNF: Sodium:neurotran 94.2 5.1 0.00011 40.5 18.7 97 153-251 195-301 (523)
101 KOG2349 Na+:iodide/myo-inosito 92.5 1.8 4E-05 43.5 11.7 157 18-183 44-203 (585)
102 COG3158 Kup K+ transporter [In 90.6 4.9 0.00011 40.0 12.2 275 70-359 71-374 (627)
103 PRK09950 putative transporter; 89.3 25 0.00055 35.2 29.6 155 18-173 81-268 (506)
104 PF05525 Branch_AA_trans: Bran 85.8 37 0.0008 33.2 15.0 94 87-184 264-357 (427)
105 PRK15433 branched-chain amino 85.6 37 0.0008 33.3 14.7 94 87-185 268-361 (439)
106 PRK09928 choline transport pro 83.4 61 0.0013 33.7 28.4 157 17-176 89-278 (679)
107 TIGR00796 livcs branched-chain 82.1 50 0.0011 31.8 14.0 93 88-184 259-351 (378)
108 COG1966 CstA Carbon starvation 80.6 67 0.0015 32.3 14.3 104 21-127 52-157 (575)
109 KOG2466 Uridine permease/thiam 68.9 1.3E+02 0.0028 30.0 20.9 203 14-225 49-277 (572)
110 PTZ00206 amino acid transporte 68.0 76 0.0016 31.6 11.7 56 268-323 121-176 (467)
111 COG1114 BrnQ Branched-chain am 59.7 1.8E+02 0.0038 28.4 14.9 82 87-172 266-347 (431)
112 PRK03356 L-carnitine/gamma-but 59.4 2E+02 0.0044 28.9 30.7 158 17-177 82-275 (504)
113 TIGR01197 nramp NRAMP (natural 59.1 1.8E+02 0.0039 28.2 29.1 37 270-306 282-318 (390)
114 TIGR00842 bcct choline/carniti 52.5 2.5E+02 0.0054 27.9 30.4 22 17-38 33-55 (453)
115 KOG3660 Sodium-neurotransmitte 43.6 4E+02 0.0087 27.7 17.2 200 22-226 39-313 (629)
116 PF03222 Trp_Tyr_perm: Tryptop 42.7 3.2E+02 0.007 26.4 12.0 80 233-312 30-109 (394)
117 PRK00968 tetrahydromethanopter 39.9 43 0.00093 29.0 3.8 36 218-253 200-236 (240)
118 PF11174 DUF2970: Protein of u 39.0 94 0.002 20.8 4.6 47 204-250 4-52 (56)
119 PF03806 ABG_transport: AbgT p 35.6 3.3E+02 0.0071 27.4 9.7 93 66-164 307-405 (502)
120 KOG3659 Sodium-neurotransmitte 32.2 5.8E+02 0.013 26.3 15.5 117 139-256 255-380 (629)
121 COG4060 MtrD Tetrahydromethano 30.7 69 0.0015 26.8 3.5 32 222-253 194-226 (230)
122 PF13782 SpoVAB: Stage V sporu 25.2 76 0.0017 24.5 2.7 40 66-105 62-109 (110)
123 PRK15132 tyrosine transporter 23.5 6.9E+02 0.015 24.3 11.0 81 234-314 31-111 (403)
124 COG1292 BetT Choline-glycine b 22.3 8.3E+02 0.018 24.8 29.2 156 16-176 83-274 (537)
125 PF11085 YqhR: Conserved membr 21.9 4.9E+02 0.011 22.0 8.5 41 55-109 71-111 (173)
No 1
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.7e-50 Score=396.64 Aligned_cols=364 Identities=18% Similarity=0.166 Sum_probs=301.0
Q ss_pred CCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhh
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~ 94 (396)
+++||+++++++++.+++++| |+|..|..+++ +|+. .+++|++++++ .++.+++++|+++++|++||.|.|+++.+
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~-~G~~-~~~~w~i~~~~-~~~~a~~~aeL~~~~P~~GG~y~y~~~~~ 79 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQ-VGTI-SILSWLVTAVG-SMALAYAFAKCGMFSRKSGGMGGYAEYAF 79 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHH-hhHH-HHHHHHHHHHH-HHHHHHHHHHHhhhCCCCCchHHHHHHHc
Confidence 357899999999999999999 99999888776 7774 57899999998 99999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHH
Q 016061 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (396)
Q Consensus 95 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~ 174 (396)
||..|++++|.+++.+.......+....+|...+++...++.+.....+++++..+.+|++|.|..+++|.+.+..++++
T Consensus 80 G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~ 159 (438)
T PRK10655 80 GKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIP 159 (438)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988776666667778888777743344556666677778889999999999999999999988887
Q ss_pred HHHHHHHHhccccCCCcccc-ccccC----ChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHH
Q 016061 175 FVVMGILSIPRIKPRRWLVV-DFKKV----DWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI 249 (396)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~ 249 (396)
++++.+.++...+++++.+. ...+. ++...+...+|+|.|+|.+++++||+|||+||+||+++.+..+++++|++
T Consensus 160 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l 239 (438)
T PRK10655 160 VVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIV 239 (438)
T ss_pred HHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHH
Confidence 77777766554444444321 11111 12223456799999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCC
Q 016061 250 PLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYG 329 (396)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~ 329 (396)
.........|++++.+++.|..+..++..+++...++....+++.+++.++++.+.+|++++++|||.+|++|+|+||++
T Consensus 240 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~~~~ 319 (438)
T PRK10655 240 STNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKVD 319 (438)
T ss_pred HHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhCcCC
Confidence 99988888888777767789999888888888888888888889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhh--------hcHHHHHHHHHH----HHHHH----HhhccccCCCCCcccccc
Q 016061 330 TPTLSILCSATGVIFLSW--------MSFQEILEFLNF----FFACS----CYVPRFSKDIHSKWWCYY 382 (396)
Q Consensus 330 ~P~~ai~~~~~i~~~~~~--------~~~~~l~~~~~~----~~~~~----~~~~~~~~~~~~~~~~p~ 382 (396)
+|++++++..+++.++.+ .+++.+.++.++ .|.+. ..+|||+|+.+||||.|.
T Consensus 320 tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~ 388 (438)
T PRK10655 320 APVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVAN 388 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHH
Confidence 999999999887765542 236666666664 23322 235666777889998653
No 2
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=4.7e-50 Score=396.20 Aligned_cols=329 Identities=18% Similarity=0.174 Sum_probs=272.9
Q ss_pred cccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhh
Q 016061 13 KAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (396)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~ 91 (396)
+++++||+++.+++++++++.++| |+|..++...+.+|+...+++|++++++ .++.+++++|+++++|++||.|.|++
T Consensus 8 ~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~-~~~~~~~~aELas~~P~aGG~y~y~~ 86 (471)
T PRK11387 8 QAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALV-VYLVMQCLGELSVAMPETGAFHVYAA 86 (471)
T ss_pred cchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 335689999999999999999999 9998887776558875567999999998 99999999999999999999999999
Q ss_pred hhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 016061 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 92 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (396)
+.+||..||+++|.+++.+....+......+.+++.++|. .+.+...+++.++.+.+|++|+|..++++.+...++
T Consensus 87 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~k 162 (471)
T PRK11387 87 RYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----VPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIK 162 (471)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999888777766666666666652 233444455567788999999999999999999988
Q ss_pred HHHHHHHHHHHhcc------ccCC-------CccccccccCChH---HHHHHHHHhhchhhhhhhhhccccCCCcchHHH
Q 016061 172 LCPFVVMGILSIPR------IKPR-------RWLVVDFKKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKA 235 (396)
Q Consensus 172 i~~~~~~~i~~~~~------~~~~-------~~~~~~~~~~~~~---~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~a 235 (396)
++.++.+++.++.. .+.. ++.+.+..+.+.. ..+...+|+|.|+|.+++.+||+|||+|++||+
T Consensus 163 i~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrA 242 (471)
T PRK11387 163 VVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVA 242 (471)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHH
Confidence 88776666554321 0111 1111111122222 223456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhc
Q 016061 236 LLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEM 315 (396)
Q Consensus 236 i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~d 315 (396)
+..+..++.++|++..++.....|.++....++|+.+++++.++++...++.+.++.+.+++.++++.+.+|++++|+||
T Consensus 243 i~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ard 322 (471)
T PRK11387 243 IRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNE 322 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 99999999999999999999999988776667899999999999999999999999999999999999999999999999
Q ss_pred CCChhHHhhcCCCCCChHHHHHHHHHHHHHh
Q 016061 316 GMLPAIFASRSKYGTPTLSILCSATGVIFLS 346 (396)
Q Consensus 316 g~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~ 346 (396)
|.+|++|+|+||+++|++++++..+.+.+..
T Consensus 323 g~lP~~f~~~~~~~~P~~Ail~~~~~~~l~~ 353 (471)
T PRK11387 323 GTLPACFARLTKRGIPLTALSVSMLGGLLAL 353 (471)
T ss_pred CCcCHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999998866554433
No 3
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=6.9e-50 Score=393.22 Aligned_cols=379 Identities=15% Similarity=0.165 Sum_probs=304.2
Q ss_pred CCCCCCCccc--cccccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016061 1 MGEEGMTSDV--QQKAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELA 77 (396)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~ 77 (396)
|..|.++++. ++++++++|+++.+++.++++|.++| |+|..++...+.+||. .+++|++++++ .++.+++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~-~~~~~~~~aEl~ 78 (458)
T PRK10249 1 MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGII-AFLIMRQLGEMV 78 (458)
T ss_pred CCCccccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4444444433 33345799999999999999999999 9998887776668985 67999999998 999999999999
Q ss_pred ccCCCCCchhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 016061 78 TSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGL 157 (396)
Q Consensus 78 ~~~p~~Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 157 (396)
+++|++||.|.|+++.+||.+|+++||.+++.+....+......+.|++.++|. .+.+....++.++.+.+|++|+
T Consensus 79 ~~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~lN~~gv 154 (458)
T PRK10249 79 VEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD----VPTWIWAAAFFIIINAVNLVNV 154 (458)
T ss_pred HhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999887777777778888877662 3445556777888899999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHhc---cccC---CCccc----cccccCChHHH---HHHHHHhhchhhhhhhhhcc
Q 016061 158 HIVGFSAVSLLVFSLCPFVVMGILSIP---RIKP---RRWLV----VDFKKVDWRGY---FNSMFWNLNYWDKASTLAGE 224 (396)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~---~~~~~----~~~~~~~~~~~---~~~~~~~~~G~e~~~~~~~E 224 (396)
|..++++.+....++..++++++.++. ..++ .++.+ .+..+.+|.++ +...+|+|.|+|.+++.+||
T Consensus 155 ~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E 234 (458)
T PRK10249 155 RLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAE 234 (458)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999999988766665554432 1111 11111 11113455543 35679999999999999999
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhh
Q 016061 225 VENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSG 304 (396)
Q Consensus 225 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 304 (396)
+|||+|++||++..+...+.++|++..+......|+++....++|+.+++++.++++...++.+.++.+.+++.++.+.+
T Consensus 235 ~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 314 (458)
T PRK10249 235 ARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYS 314 (458)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888887766668999999998888888888888999999999999999
Q ss_pred hhHHHHHHhhcCCChhHHhhcCCCCCChHHHHHHHHHHHHHhhh-------cHHHHHHHHHH----HHHHH---H-hhcc
Q 016061 305 DAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNF----FFACS---C-YVPR 369 (396)
Q Consensus 305 ~sR~l~~~a~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~l~~~~~~----~~~~~---~-~~~~ 369 (396)
.+|++++|+|||.+|++|+|+||+++|++++++..+++.+..+. .++.+.+..+. .|.+. . .+||
T Consensus 315 ~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 315 NSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888665421 35566666543 23322 2 2333
Q ss_pred --ccCCCCCcccccccch
Q 016061 370 --FSKDIHSKWWCYYCGV 385 (396)
Q Consensus 370 --~~~~~~~~~~~p~~~~ 385 (396)
++++.+||||.|+..+
T Consensus 395 ~~~~~~~~~p~~~~~~p~ 412 (458)
T PRK10249 395 AMRRQGRETQFKALLYPF 412 (458)
T ss_pred HHHhcCCCCCccCCCccH
Confidence 3445678999887544
No 4
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=382.81 Aligned_cols=370 Identities=24% Similarity=0.281 Sum_probs=321.2
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCch-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGP-LLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~-~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~ 91 (396)
+.+++||++.+..+.+.+++++| |+|..|..+...+|+ ..++.-|+.++++ +++.+++|+|+++.+|++||.|.|+.
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~-s~~galcyaELGT~ipksGgd~ayi~ 85 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGII-SIIGALCYAELGTSIPKSGGDYAYIS 85 (479)
T ss_pred cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHH-HHHHHHHHHHHhccccCCCcchhhHH
Confidence 44578999999999999999999 999999998765654 3567889999998 99999999999999999999999999
Q ss_pred hhhCChhHHHHHHHHHHHHhhh-HhHHHHHHHHH-HHHhchhhh-hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 016061 92 SAFGPFWGFQEGFWKWLSGVLD-NALYPVLFLDY-LKHSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL 168 (396)
Q Consensus 92 ~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 168 (396)
++||+.+||+..|.-++..... .+..+...++| ++..+|... +.......+..++..++++|+.++|...++|.+.+
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~~ft 165 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQIVFT 165 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 9999999999999988765544 58899999999 777887322 23455566778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc---cCCCccc--cc---cccCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHH
Q 016061 169 VFSLCPFVVMGILSIPRI---KPRRWLV--VD---FKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (396)
Q Consensus 169 ~~~i~~~~~~~i~~~~~~---~~~~~~~--~~---~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~ 240 (396)
..|++.+.++++.++... +.+|+.+ +. .....+...+...+|+|.|||...+.+||+|||+||+|||+..++
T Consensus 166 ~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi 245 (479)
T KOG1287|consen 166 IAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISI 245 (479)
T ss_pred HHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhh
Confidence 999999999999887642 2233221 11 112336667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChh
Q 016061 241 VLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA 320 (396)
Q Consensus 241 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~ 320 (396)
.+++++|++++++...++++||..+++....+..++.+|.+. +++.+.+.++++++.++.+.+.||.+++++|+|++|+
T Consensus 246 ~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~ 324 (479)
T KOG1287|consen 246 PLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPA 324 (479)
T ss_pred HHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccH
Confidence 999999999999999999999998888888899999998876 9999999999999999999999999999999999999
Q ss_pred HHhhcCC-CCCChHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHH--------HhhccccCCCCCcccccccch
Q 016061 321 IFASRSK-YGTPTLSILCSATGVIFLSWM-SFQEILEFLNFFFACS--------CYVPRFSKDIHSKWWCYYCGV 385 (396)
Q Consensus 321 ~~~~~~~-~~~P~~ai~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~~~~ 385 (396)
.|+.+|+ +.+|..++++...++++.++. |+++++++.++.+.+. .++|+|+|+.+||+|.|....
T Consensus 325 ~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p 399 (479)
T KOG1287|consen 325 FFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIP 399 (479)
T ss_pred HHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehH
Confidence 9999996 569999999999999999965 6999999999866553 356888999999999996443
No 5
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=1.5e-49 Score=390.33 Aligned_cols=363 Identities=18% Similarity=0.270 Sum_probs=294.8
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
+.+++||+++++++++.++.++| |+|..++.+.. .|+ ..+++|+++++. .++.+++++|+++++|++||.|+|+++
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~-~g~-~~~~~~~i~~~~-~l~~al~~aEL~s~~P~aGG~y~~~~~ 79 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS-TGG-IAIYGWLVTIIG-ALGLSMVYAKMSSLDPSPGGSYAYARR 79 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH-HHH-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHH
Confidence 34578999999999999999999 99999888776 455 356999999998 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
.+||..|++++|.+++.+.............|...+++...+++......+++++..+.+|.+|.|..+++|.+.+..++
T Consensus 80 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~ 159 (445)
T PRK10644 80 CFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLAL 159 (445)
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 99999999999999998877766666566677777766443344455566777788899999999999999999999998
Q ss_pred HHHHHHHHHHhccccCCCcccccc--ccCChHH---HHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHH
Q 016061 173 CPFVVMGILSIPRIKPRRWLVVDF--KKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSY 247 (396)
Q Consensus 173 ~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y 247 (396)
++++++.+.++...+.+++.+... ...++.. .+...+|+|.|+|.+++++||+|||+|++||+++.+..++.++|
T Consensus 160 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y 239 (445)
T PRK10644 160 IPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCY 239 (445)
T ss_pred HHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHH
Confidence 877777766655444333322111 1112222 34567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCC
Q 016061 248 LIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSK 327 (396)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~ 327 (396)
++..++.....|++++..++.|+.++.++..+++...++.+..+++.+++.++++...+|.+++|+|||.+|++|+|+||
T Consensus 240 ~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~~ 319 (445)
T PRK10644 240 VLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNK 319 (445)
T ss_pred HHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCc
Confidence 99999999999988776677899999999888888888888888899999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhhh--------cHHHHHHHHHH----HHHHH---H-hhccccCCCCCccc
Q 016061 328 YGTPTLSILCSATGVIFLSWM--------SFQEILEFLNF----FFACS---C-YVPRFSKDIHSKWW 379 (396)
Q Consensus 328 ~~~P~~ai~~~~~i~~~~~~~--------~~~~l~~~~~~----~~~~~---~-~~~~~~~~~~~~~~ 379 (396)
+++|++++++..+++.++.+. .++.+.++.++ .|.+. . .+|||+++.+||+.
T Consensus 320 ~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~~ 387 (445)
T PRK10644 320 AGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAY 387 (445)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccch
Confidence 999999999999988765532 36667776654 33332 2 23455555556543
No 6
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=2.6e-49 Score=388.83 Aligned_cols=368 Identities=21% Similarity=0.281 Sum_probs=294.7
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhc-CchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAG-GGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~-~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~ 91 (396)
+++++|++++++.++++++.++| |+|..+..+... +++...+++|++++++ .++.+++++|+++++|++||.|.|++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~-~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLI-VIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 45689999999999999999999 899888776443 4454567899999998 99999999999999999999999999
Q ss_pred hhhCChhHHHHHHHHH-HHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 016061 92 SAFGPFWGFQEGFWKW-LSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (396)
Q Consensus 92 ~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (396)
+.+||.+|++.+|..+ .......+..+...++|+....|. ++........++......+|.+|+|..+|+|.+.+..
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~ 159 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI--DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIA 159 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999754 445556677777788888766653 1223344556666778889999999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCcccccc---ccCC-hHHH---HHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHH
Q 016061 171 SLCPFVVMGILSIPRIKPRRWLVVDF---KKVD-WRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (396)
Q Consensus 171 ~i~~~~~~~i~~~~~~~~~~~~~~~~---~~~~-~~~~---~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~ 243 (396)
++++++++++.++...+++++.+... ...+ +.+. +...+|+|.|||.+++++||+|||+|++||+++.+..++
T Consensus 160 ~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~ 239 (445)
T PRK11357 160 KIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLV 239 (445)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHH
Confidence 99887777766654333333322111 1112 2332 356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCccccccHHHHHHHHh--chhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH
Q 016061 244 VSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLI--GGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI 321 (396)
Q Consensus 244 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~ 321 (396)
+++|++.+++.....|+|++..++.|+.+..++. .+++...++.+..+++.+++.++++.+.+|++++|+|||.+|++
T Consensus 240 ~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~ 319 (445)
T PRK11357 240 LVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKC 319 (445)
T ss_pred HHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHH
Confidence 9999999999988888888777778888888764 45666677777788889999999999999999999999999999
Q ss_pred HhhcC-CCCCChHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHH-------HHhhccccCCCCCcccccccc
Q 016061 322 FASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFFFAC-------SCYVPRFSKDIHSKWWCYYCG 384 (396)
Q Consensus 322 ~~~~~-~~~~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~p~~~ 384 (396)
|+|+| |+++|++++++..+++.++. ..+++++.++.++.+.+ +.+.+||+++.+||||.|...
T Consensus 320 ~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~~k~p~~~ 391 (445)
T PRK11357 320 FGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTPAFG 391 (445)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCcccCCch
Confidence 99999 68999999999999988777 56788888776643322 233345556678899988643
No 7
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.8e-49 Score=396.74 Aligned_cols=344 Identities=18% Similarity=0.223 Sum_probs=292.7
Q ss_pred cccCCCCcccchhHHHHHHhhhcc-cccCchhHhh-hcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhh
Q 016061 13 KAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVK-AGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (396)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~-~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~ 90 (396)
++++++|+++.+|+++++++.++| |+|.+++... +.+||. .+++|+++++. +++.+++|+|+++++|++||.|.|+
T Consensus 22 ~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~-~l~~al~yaElas~~P~sGg~Y~y~ 99 (557)
T TIGR00906 22 EESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLA-AVLSGFCYAEFGARVPKAGSAYLYS 99 (557)
T ss_pred cccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcceeeH
Confidence 345689999999999999999999 9998887654 448885 57999999998 9999999999999999999999999
Q ss_pred hhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh-----------h-hh--hhHHHHHHHHHHHHHHHHHhh
Q 016061 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIF-----------N-LL--IARIPALLGITGALTYLNYRG 156 (396)
Q Consensus 91 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~--~~~~~~~~~~~~~~~~~~~~g 156 (396)
++.+||.+||++||.+++.|....+..+...+.|+..+++.. . +. ......+++++++.+.+|.+|
T Consensus 100 ~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~G 179 (557)
T TIGR00906 100 YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFG 179 (557)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888888888887655320 0 00 112344566777788999999
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHhccccCCCcccc------ccccCChHHHH---HHHHHhhchhhhhhhhhccccC
Q 016061 157 LHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVV------DFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVEN 227 (396)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~ 227 (396)
+|.++|++.+.+.++++.++++++.++.+.+.+|+... ...+.++.+++ ...+|+|.|+|..++++||+||
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~kn 259 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKN 259 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccC
Confidence 99999999999999999888888888776666665421 11234554444 4578999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhH
Q 016061 228 PSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAF 307 (396)
Q Consensus 228 p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR 307 (396)
|+|++||+++.++.+++++|++.+++.....|+++.+. +.|+.+.+++.+.++...++.+..+.+.+++.++.+.+.+|
T Consensus 260 P~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~-~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sR 338 (557)
T TIGR00906 260 PQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDP-DAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPR 338 (557)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCc-CcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876543 56888888888878888888898999999999999999999
Q ss_pred HHHHHhhcCCChhHHhhcC-CCCCChHHHHHHHHHHHHHh-hhcHHHHHHHHHH
Q 016061 308 QLLGMSEMGMLPAIFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNF 359 (396)
Q Consensus 308 ~l~~~a~dg~lP~~~~~~~-~~~~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~~ 359 (396)
++++|+|||.+|++|+|+| |+++|++++++..+++.++. +.+++.+.++.+.
T Consensus 339 il~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~si 392 (557)
T TIGR00906 339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSI 392 (557)
T ss_pred HHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999 68999999999999987766 5577888887774
No 8
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=3.6e-49 Score=391.02 Aligned_cols=367 Identities=14% Similarity=0.117 Sum_probs=293.2
Q ss_pred cCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhh
Q 016061 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (396)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~ 93 (396)
++++|+++.++..++++|.++| |+|..++.....+||. .+++|++++++ .++.+++++|+++++|++||.|+|+++.
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~-~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLF-SFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 4589999999999999999999 9998887665558985 46899999998 9999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Q 016061 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (396)
Q Consensus 94 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~ 173 (396)
+||..||++||.+++.|....+......+.+...+ +.. +..+.+...+++.++.+.+|++|.|..++++.++..++++
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~ 179 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAF-GGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVL 179 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876666555556665533 211 1245556667788889999999999999999999999987
Q ss_pred HHHHHHHHHhcc---ccCC--C---cccc----ccccCChHHHH---HHHHHhhchhhhhhhhhccccCCCcchHHHHHH
Q 016061 174 PFVVMGILSIPR---IKPR--R---WLVV----DFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (396)
Q Consensus 174 ~~~~~~i~~~~~---~~~~--~---~~~~----~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~ 238 (396)
.++++++.++.. .++. + +... +..+.++.+.+ ...+|+|.|+|.+++++||+|||+|++||++..
T Consensus 180 ~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~ 259 (499)
T PRK15049 180 AIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINS 259 (499)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHH
Confidence 777665554321 1111 1 1111 11133444333 357899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCC
Q 016061 239 AVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (396)
Q Consensus 239 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~l 318 (396)
+...+.++|+...+......|+++.+...+|+.+++++.+.++...++.+.++++.+++.++.+.+.+|++++|+|||.+
T Consensus 260 ~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~l 339 (499)
T PRK15049 260 VIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSA 339 (499)
T ss_pred HHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999998887778899999999999989999999999999999999999999999999999999
Q ss_pred hhHHhhcCCCCCChHHHHHHHHHHHHHhh-------hcHHHHHHHHHH----HHHHH---H-hhccccC---CCCCcccc
Q 016061 319 PAIFASRSKYGTPTLSILCSATGVIFLSW-------MSFQEILEFLNF----FFACS---C-YVPRFSK---DIHSKWWC 380 (396)
Q Consensus 319 P~~~~~~~~~~~P~~ai~~~~~i~~~~~~-------~~~~~l~~~~~~----~~~~~---~-~~~~~~~---~~~~~~~~ 380 (396)
|++|+|+||+++|++++++..++..+..+ ..++.++++.++ .|.+. . .+||+.+ +.+||||.
T Consensus 340 P~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~ 419 (499)
T PRK15049 340 PSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKL 419 (499)
T ss_pred CHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcc
Confidence 99999999999999999988877655321 125666666664 23222 2 2344322 34679998
Q ss_pred cccch
Q 016061 381 YYCGV 385 (396)
Q Consensus 381 p~~~~ 385 (396)
|...+
T Consensus 420 ~~~p~ 424 (499)
T PRK15049 420 PGAPF 424 (499)
T ss_pred cCccH
Confidence 86433
No 9
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=3.5e-49 Score=386.65 Aligned_cols=366 Identities=24% Similarity=0.312 Sum_probs=309.1
Q ss_pred CCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhC
Q 016061 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g 95 (396)
++|++|.+|.+++.++.++| |++..+......+|+. .+++|+++++. .++.+++++|+++++|++||.|+|+++.+|
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLT-ALFIALVYAELAAMLPVAGSPYTYAYEAMG 78 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence 47999999999999999999 8898887776557885 46899999998 889999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHH------------HHHHHHHHHHHHHHHhhhhHHHHH
Q 016061 96 PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARI------------PALLGITGALTYLNYRGLHIVGFS 163 (396)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~ 163 (396)
|..|++.+|.+++++....+..+...+++++.+++..+.+.+.. ...+++.++.+.+|++|.|..+|+
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 99999999999999999999999999999888776321111111 234677788899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCccccccccCChH---HHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHH
Q 016061 164 AVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (396)
Q Consensus 164 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~ 240 (396)
+.+...++++.++++++.++.+.+.+++.+.. +.++. ..+...+|+|.|+|...+++||+|||+|++||+++.+.
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASNNYTPFM--PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCC--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 99999999988877777666655555555432 23333 33456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChh
Q 016061 241 VLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA 320 (396)
Q Consensus 241 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~ 320 (396)
.++.++|++..+......|.++..+++.|+.+..++.++++...++.+..+++.+++.++++.+.+|++++++|||.+|+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 99999999999999988888877777789999999888999999999999999999999999999999999999999999
Q ss_pred HHhhcC-CCCCChHHHHHHHHHHHHHh-hhcHHHHHHHHHHH----HHH---H-HhhccccCCCCCcccccccchh
Q 016061 321 IFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFF----FAC---S-CYVPRFSKDIHSKWWCYYCGVL 386 (396)
Q Consensus 321 ~~~~~~-~~~~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~~~----~~~---~-~~~~~~~~~~~~~~~~p~~~~~ 386 (396)
+|+|+| |+++|++++++..+++.+.. ..+++.+.++.++. |.+ + ..+|||+||.+||||.|....+
T Consensus 317 ~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~ 392 (429)
T TIGR00909 317 SLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVL 392 (429)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHH
Confidence 999999 68999999999988887766 55678888877643 322 2 3457778899999998874433
No 10
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=5.8e-49 Score=386.18 Aligned_cols=364 Identities=18% Similarity=0.189 Sum_probs=291.2
Q ss_pred ccCCCCcccchhHHHHHHhhhcccccCc-hhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSGGPFGV-EDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~Gg~f~~-~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
+++++|++|.++.++++++.++||.+.. +..... +|+...+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~-~G~~~~~~~~~i~~~~-~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQ-GGWGGFVVATLLVATM-YLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhhccchhHhhHHHH-hCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4568999999999999999998865543 444555 8887777899999887 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
.+||..|++++|.+++.+....+..+...++|++.++|. .+.+...+++.++...+|++|+|..++++.+...+++
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~----~~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~ 155 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV----GPGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAI 155 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999888873 2344556677788889999999999999999998888
Q ss_pred HHHHHHHHHHhccccCCCcccc------ccccCChHHH---HHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHH
Q 016061 173 CPFVVMGILSIPRIKPRRWLVV------DFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (396)
Q Consensus 173 ~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~ 243 (396)
+.++++......+.+..++.+. ...+.++.+. +...+|+|.|+|.+++++||+|||+|++||+++.+..++
T Consensus 156 ~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~ 235 (442)
T TIGR00908 156 IALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTL 235 (442)
T ss_pred HHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHH
Confidence 7655544433333222222111 1112333333 345689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCccccccHHHHHHHHhch--hHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH
Q 016061 244 VSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGG--FWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI 321 (396)
Q Consensus 244 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~ 321 (396)
.++|+..........+++++.+.++|+.+..++..+ ++...++.+..+.+.+++.++.+.+.+|++++|+|||.+|++
T Consensus 236 ~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~ 315 (442)
T TIGR00908 236 LALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPES 315 (442)
T ss_pred HHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 999998877776666766666667788888887754 355666677777888899999999999999999999999999
Q ss_pred HhhcCCCCCChHHHHHHHHHHHHHh-hhcHHHHHHHHHH----HHHHH----HhhccccCCCCCccccccc
Q 016061 322 FASRSKYGTPTLSILCSATGVIFLS-WMSFQEILEFLNF----FFACS----CYVPRFSKDIHSKWWCYYC 383 (396)
Q Consensus 322 ~~~~~~~~~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~~----~~~~~----~~~~~~~~~~~~~~~~p~~ 383 (396)
|+|+||+++|++++++..+++.+.. ..+.+.++++.++ .|.+. ..+||++||.+||||.|..
T Consensus 316 ~~~~~~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~ 386 (442)
T TIGR00908 316 LSKVNRKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGG 386 (442)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCc
Confidence 9999999999999999998887766 3455555555553 23322 2357778899999998853
No 11
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=2.5e-48 Score=385.44 Aligned_cols=372 Identities=17% Similarity=0.135 Sum_probs=289.2
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
+++++|+++.++++++++|.++| |+|..++...+.+||...+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~-~~~~al~~aEL~s~~P~sGg~y~y~~~ 88 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLM-VYFLMTSLGELAAYMPVSGSFATYGQN 88 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHH
Confidence 45689999999999999999999 9999988776668986578999999998 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
.+||.+|++.||.+++.+....+........++..+++. .+.+....+++.+...+|++|.|..++++.+.+..++
T Consensus 89 ~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki 164 (489)
T PRK10836 89 YVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD----TPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKV 164 (489)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 999999999999999987776665544444455555552 2333345566667789999999999999999999998
Q ss_pred HHHHHHHHHHhcc------cc----CCCccccc-cccCChHHHH---HHHHHhhchhhhhhhhhccccCCCcchHHHHHH
Q 016061 173 CPFVVMGILSIPR------IK----PRRWLVVD-FKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (396)
Q Consensus 173 ~~~~~~~i~~~~~------~~----~~~~~~~~-~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~ 238 (396)
..++.+++.++.. .+ .+++.+.. ..+.++.+.+ ...+|+|.|+|.+++.+||+|||+|++||+++.
T Consensus 165 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~ 244 (489)
T PRK10836 165 TTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQ 244 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7766655433321 11 11222111 1122444433 345799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcc--------ccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Q 016061 239 AVVLVVSSYLIPLLAGTGGLTSLSSE--------WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLL 310 (396)
Q Consensus 239 ~~~~~~~~y~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~ 310 (396)
+...+.++|++.........|.++.+ ...+|+...++..+.++...++...++.+.+++.++.+.+.+|+++
T Consensus 245 ~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~ 324 (489)
T PRK10836 245 VFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLY 324 (489)
T ss_pred HHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888865421 1246888888888878788888899999999999999999999999
Q ss_pred HHhhcCCChhHHhhcCCCCCChHHHHHHHHHHHHHhhh-------cHHHHHHHHHH----HHHH---HH-hhccc----c
Q 016061 311 GMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNF----FFAC---SC-YVPRF----S 371 (396)
Q Consensus 311 ~~a~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~l~~~~~~----~~~~---~~-~~~~~----~ 371 (396)
+|+|||.+|++|+|+||+++|++|+++..+++.+..+. .++.+.++.++ .|.. +. .+||+ +
T Consensus 325 a~Ardg~lP~~~~kv~~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~ 404 (489)
T PRK10836 325 TLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQG 404 (489)
T ss_pred HHHcCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999887766532 13445554443 2222 22 33443 4
Q ss_pred CCCC-Ccccccccchhhhhc
Q 016061 372 KDIH-SKWWCYYCGVLIISC 390 (396)
Q Consensus 372 ~~~~-~~~~~p~~~~~~~~~ 390 (396)
||.+ ||||.|...+.-+..
T Consensus 405 ~~~~~~p~~~p~~p~~~~~~ 424 (489)
T PRK10836 405 HDLNDLPYRSGFFPLGPIFA 424 (489)
T ss_pred CCcCCCCCcCCCccHHHHHH
Confidence 5654 799998765544433
No 12
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=4e-48 Score=382.65 Aligned_cols=342 Identities=23% Similarity=0.315 Sum_probs=287.9
Q ss_pred CCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhhhhhhh
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSA 93 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~-~Gg~y~~~~~~ 93 (396)
+++|++|.++++++.++.++| |+|..|......+|+...+++|++++++ .++.+++++|+++++|+ +||.|+|+++.
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~-~~~~al~~aEl~s~~P~~sGG~y~y~~~~ 82 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVG-MLALAFVFAILATKKPELDGGIYAYAREG 82 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhH
Confidence 357899999999999999999 9999998887668886667999999998 99999999999999999 99999999999
Q ss_pred hCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhh--hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 016061 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN--LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 94 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (396)
+||..|++++|.+++.+.......+....+++..++|... ++.+.....+++.++...+|.+|+|..+|+|.+.+..+
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~ 162 (473)
T TIGR00905 83 FGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAK 162 (473)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999999998887777777777778887777432 23455566677778889999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCcc----ccccc--cCChHH---HHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHH
Q 016061 172 LCPFVVMGILSIPRIKPRRWL----VVDFK--KVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVL 242 (396)
Q Consensus 172 i~~~~~~~i~~~~~~~~~~~~----~~~~~--~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~ 242 (396)
+++++++++.++...+.+++. +...+ +..+.. .+...+|+|.|||.+++++||+|| +|++||+++.+..+
T Consensus 163 l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i 241 (473)
T TIGR00905 163 LIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLG 241 (473)
T ss_pred HHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHH
Confidence 988887777665443333221 11110 112333 234579999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCccccccH-HHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH
Q 016061 243 VVSSYLIPLLAGTGGLTSLSSEWSDGY-FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI 321 (396)
Q Consensus 243 ~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~ 321 (396)
++++|++...+.....|++++.+.+.| ..++.++..+++...++.+..+++.+++.++++.+.+|++++|+|||.+|++
T Consensus 242 ~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~ 321 (473)
T TIGR00905 242 ALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKI 321 (473)
T ss_pred HHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH
Confidence 999999999999998888887777788 7888888888988888899899999999999999999999999999999999
Q ss_pred HhhcCCCCCChHHHHHHHHHHHHHhh------hcHHHHHHHHHH
Q 016061 322 FASRSKYGTPTLSILCSATGVIFLSW------MSFQEILEFLNF 359 (396)
Q Consensus 322 ~~~~~~~~~P~~ai~~~~~i~~~~~~------~~~~~l~~~~~~ 359 (396)
|+|+||+++|++++++..+++.+... .+++.+.++.++
T Consensus 322 ~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 365 (473)
T TIGR00905 322 FGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVV 365 (473)
T ss_pred HHhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 99999999999999999888765442 346777776664
No 13
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=4.3e-48 Score=378.55 Aligned_cols=325 Identities=21% Similarity=0.255 Sum_probs=276.2
Q ss_pred CCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhh
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~ 94 (396)
+++|+++.++++++.+++++| |+|.+|...+. +|+. .+++|+++++. .++.+++++|+++++|++||.|.|++| +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~-~G~~-~i~~wli~~~~-~l~~al~~aEL~s~~P~~GG~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLAS-IGSI-AIWGWIISIIG-AMSLAYVYARLATKNPQQGGPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-hHHH-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCChhHHHHH-H
Confidence 468899999999999999999 99999988876 7884 67999999998 999999999999999999999999999 8
Q ss_pred CChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHH
Q 016061 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (396)
Q Consensus 95 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~ 174 (396)
||.+|+.++|.++................|+..++|...++.+..+..+++.++.+.+|.+|.|..++++.+....++++
T Consensus 78 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~ 157 (435)
T PRK10435 78 SPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIP 157 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776666666677778888888755444555555667777889999999999999999988888877
Q ss_pred HHHHHHHHhccccCCCcccc-c-cccCChHH---HHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHH
Q 016061 175 FVVMGILSIPRIKPRRWLVV-D-FKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI 249 (396)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~~-~-~~~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~ 249 (396)
++.+.+.++.+.+++++.+. . ..+.++.+ .+...+|+|.|+|.+++.+||+|||+||+||++..+..++.++|++
T Consensus 158 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil 237 (435)
T PRK10435 158 VVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIA 237 (435)
T ss_pred HHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHH
Confidence 66655555544443322111 1 11222333 3356799999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCC
Q 016061 250 PLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYG 329 (396)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~ 329 (396)
..+......|+++.+.++.|+.+.+++.++++...++.+.++++++++.++++...+|..++++|||.+|++|+|+||++
T Consensus 238 ~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~nk~g 317 (435)
T PRK10435 238 ATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVDKNG 317 (435)
T ss_pred HHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCcCC
Confidence 99999999998888778889999999999999999988888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHH
Q 016061 330 TPTLSILCSATGVIF 344 (396)
Q Consensus 330 ~P~~ai~~~~~i~~~ 344 (396)
+|+++++++.++..+
T Consensus 318 ~P~~Al~~~~~~~~~ 332 (435)
T PRK10435 318 IPKKGLLLAAVKMTA 332 (435)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998776544
No 14
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=6.5e-48 Score=379.04 Aligned_cols=340 Identities=18% Similarity=0.211 Sum_probs=284.7
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
+++++|+++.++..+++++.++| |+|..+....+.+|+ ..+++|++++++ .++.+++++|+++++|.+||.|+|+++
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~-~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFI-AFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 44699999999999999999999 999888777666888 467999999998 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
.+||..|++.||.+++.+....+......+++++.++|. .+.+....++.++...+|++|.|..++++.+.+.+++
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki 160 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE----IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKV 160 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888898887762 3445556677788899999999999999999999998
Q ss_pred HHHHHHHHHHhc---cc--cC----CCcccc-ccccCChHHH---HHHHHHhhchhhhhhhhhccccCCCcchHHHHHHH
Q 016061 173 CPFVVMGILSIP---RI--KP----RRWLVV-DFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (396)
Q Consensus 173 ~~~~~~~i~~~~---~~--~~----~~~~~~-~~~~~~~~~~---~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~ 239 (396)
..++++++.++. .. ++ .++.+. ...+.++.++ +...+|+|.|+|.+++.+||+|||+|++||++..+
T Consensus 161 ~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~ 240 (456)
T PRK10238 161 IAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQV 240 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 777655543321 11 11 111111 1113344433 34679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCCh
Q 016061 240 VVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP 319 (396)
Q Consensus 240 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP 319 (396)
...+.+.|+..........|+++...+++|+.++.++.+.++...++...++.+.+++.++++.+.+|++++|+|||.+|
T Consensus 241 ~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP 320 (456)
T PRK10238 241 IYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP 320 (456)
T ss_pred HHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999998888777788888776778999999988888888888888999999999999999999999999999999
Q ss_pred hHHhhcCCCCCChHHHHHHHHHHHHHhh-------hcHHHHHHHHHH
Q 016061 320 AIFASRSKYGTPTLSILCSATGVIFLSW-------MSFQEILEFLNF 359 (396)
Q Consensus 320 ~~~~~~~~~~~P~~ai~~~~~i~~~~~~-------~~~~~l~~~~~~ 359 (396)
++|+|+||+++|++++++..+++.+..+ ..++.+.++...
T Consensus 321 ~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~ 367 (456)
T PRK10238 321 KALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVS 367 (456)
T ss_pred HHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 9999999999999999999888766553 225666666553
No 15
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.2e-47 Score=377.00 Aligned_cols=369 Identities=15% Similarity=0.124 Sum_probs=295.9
Q ss_pred cCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhh
Q 016061 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (396)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~ 93 (396)
+++||+++.+|..++++|+++| |+|..++.....+|| ..+++|++++++ .++.+++++|+++++|++||.|+|+++.
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~-~~~v~~~~aEl~~~~P~sGg~~~y~~~~ 83 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLF-VFFIMRSMGEMLFLEPVTGSFAVYAHRY 83 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4588999999999999999999 998777666555899 467999999998 9999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Q 016061 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (396)
Q Consensus 94 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~ 173 (396)
+||.+|+..+|.+++.+....+......+.|++.++|. .+.+....++.+..+.+|++|+|..++++.+.+.++++
T Consensus 84 ~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~ 159 (461)
T PRK10746 84 MSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE----MAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVT 159 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888773 34445556677788889999999999999999999887
Q ss_pred HHHHHHHHHhc----c-cc------CCCccccc-cccCChHHH---HHHHHHhhchhhhhhhhhccccCCCcchHHHHHH
Q 016061 174 PFVVMGILSIP----R-IK------PRRWLVVD-FKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (396)
Q Consensus 174 ~~~~~~i~~~~----~-~~------~~~~~~~~-~~~~~~~~~---~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~ 238 (396)
.++++++.++. . .+ .+++.+.. ..+.++.++ +...+|+|.|+|.+++.+||+|||+|++||++..
T Consensus 160 ~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~ 239 (461)
T PRK10746 160 TIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGK 239 (461)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHH
Confidence 76665554431 1 11 11222111 113345444 4567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCC
Q 016061 239 AVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (396)
Q Consensus 239 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~l 318 (396)
+...+.++|++..++.....|+++.+.+++|+.+.+++.+.+....++..+++.+.+++.++.+.+.+|++++|+|||.+
T Consensus 240 ~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~l 319 (461)
T PRK10746 240 VLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQL 319 (461)
T ss_pred HHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999887778899999998888888888888899999999999999999999999999999
Q ss_pred hhHHhhcCCCCCChHHHHHHHHHHHHHh---h--h----cHHHHHHHHHHH----HHH---H-HhhccccCC--CCCccc
Q 016061 319 PAIFASRSKYGTPTLSILCSATGVIFLS---W--M----SFQEILEFLNFF----FAC---S-CYVPRFSKD--IHSKWW 379 (396)
Q Consensus 319 P~~~~~~~~~~~P~~ai~~~~~i~~~~~---~--~----~~~~l~~~~~~~----~~~---~-~~~~~~~~~--~~~~~~ 379 (396)
|+.|+|+||+++|++++++......+.. + . .++.+.++.++. |.. + ..+||++|+ .++|||
T Consensus 320 P~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~ 399 (461)
T PRK10746 320 PAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFR 399 (461)
T ss_pred CHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCc
Confidence 9999999999999999988754433221 1 1 134445444432 222 2 234555554 468999
Q ss_pred ccccchhhhh
Q 016061 380 CYYCGVLIIS 389 (396)
Q Consensus 380 ~p~~~~~~~~ 389 (396)
.|+..+.-..
T Consensus 400 ~~~~p~~~~~ 409 (461)
T PRK10746 400 SILFPWANYL 409 (461)
T ss_pred CCCccHHHHH
Confidence 8775554443
No 16
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=8.9e-47 Score=375.85 Aligned_cols=367 Identities=19% Similarity=0.227 Sum_probs=286.6
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchH-HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPL-LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~-~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~ 91 (396)
+++++|+++.++.+++.++.++| |+|..+....+.+|+. ..+++|++++++ .++.+++++|+++++|++||.|+|++
T Consensus 37 ~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~-~~~~al~~aELas~~P~sGG~y~~~~ 115 (501)
T TIGR00911 37 AVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIF-SIVGALVYAELGTTIPKSGGEYNYIL 115 (501)
T ss_pred ccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCchhhhHH
Confidence 45689999999999999999999 9998887766546653 345789999987 99999999999999999999999999
Q ss_pred hhhCChhHHHHHHHHHHH-HhhhHhHHHHHHHHHHHH-hchhhh-hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 016061 92 SAFGPFWGFQEGFWKWLS-GVLDNALYPVLFLDYLKH-SLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL 168 (396)
Q Consensus 92 ~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 168 (396)
+.+||..|++.+|..+.. +....+..+...++|+.. .++... +.+....++++++++.+.+|++|+|..+|++.+.+
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~ 195 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFT 195 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987763 344455556666666533 344221 12334456677778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccC---CCccc---cccccCC---hHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHH
Q 016061 169 VFSLCPFVVMGILSIPRIKP---RRWLV---VDFKKVD---WRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (396)
Q Consensus 169 ~~~i~~~~~~~i~~~~~~~~---~~~~~---~~~~~~~---~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~ 239 (396)
..++.+++++++.++...+. ++..+ +...+.+ +...+...+|+|.|||.+++++||+|||+|++||+++.+
T Consensus 196 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s 275 (501)
T TIGR00911 196 ACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIIS 275 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHH
Confidence 99998887777666543211 11111 1111122 333446679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCCh
Q 016061 240 VVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP 319 (396)
Q Consensus 240 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP 319 (396)
..+++++|++..++.....|++++..++.+.....+...+ ....++.+...++.+++.++.+.+.+|++++|+|||.+|
T Consensus 276 ~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP 354 (501)
T TIGR00911 276 MPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLP 354 (501)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999888887765544444455555555 566777788888999999999999999999999999999
Q ss_pred hHHhhcCC-CCCChHHHHHHHHHHHHHh-hhcHHHHHHHHHH----HHHHH----HhhccccCCCCCcccccc
Q 016061 320 AIFASRSK-YGTPTLSILCSATGVIFLS-WMSFQEILEFLNF----FFACS----CYVPRFSKDIHSKWWCYY 382 (396)
Q Consensus 320 ~~~~~~~~-~~~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~~----~~~~~----~~~~~~~~~~~~~~~~p~ 382 (396)
++|+|+|+ +++|++++++..+++++.. ..++..++++.++ .|.+. +.+|||+||.+||||.|.
T Consensus 355 ~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~ 427 (501)
T TIGR00911 355 SLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPL 427 (501)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCch
Confidence 99999995 7999999999988877665 4455666665443 33332 346778889999999986
No 17
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=8.3e-47 Score=371.78 Aligned_cols=327 Identities=20% Similarity=0.210 Sum_probs=274.8
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
+.++||+++.+|..++.++.++| |+|..+......+|+. .+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~-~~~~a~~~aEl~s~~P~~Gg~~~~~~~ 84 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLL-VVFIMRMLGEMAVANPDTGSFSTYADD 84 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 45689999999999999999999 8998887765558885 46899999998 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
.+||..|++.+|.+++++....+......+++++.++|. .+.+...+++.++...+|++|.|..++++.+.+.+++
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki 160 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----IPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKV 160 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 999999999999999999998888888888888887773 4456667788888899999999999999999999998
Q ss_pred HHHHHHHHHHhc---ccc----CCCccccc----cccCChHH---HHHHHHHhhchhhhhhhhhccccCCCcchHHHHHH
Q 016061 173 CPFVVMGILSIP---RIK----PRRWLVVD----FKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (396)
Q Consensus 173 ~~~~~~~i~~~~---~~~----~~~~~~~~----~~~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~ 238 (396)
+.++.+++.++. ..+ ..++.+.. ..+.++.+ .+...+|+|.|+|.+++++||+|||+|++||++..
T Consensus 161 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 240 (452)
T TIGR01773 161 IAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNS 240 (452)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHH
Confidence 877666554432 111 11111111 11234333 34567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCccc-cccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCC
Q 016061 239 AVVLVVSSYLIPLLAGTGGLTSLSSEW-SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (396)
Q Consensus 239 ~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~ 317 (396)
+...+.++|++.........|.++.+. ...|+.+..+..++++...++.+.++++.+++.++.+.+.+|++++|+|||.
T Consensus 241 ~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~ 320 (452)
T TIGR01773 241 VIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGD 320 (452)
T ss_pred HHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999888887777665332 2347888888888888888888888899999999999999999999999999
Q ss_pred ChhHHhhcCCCCCChHHHHHHHHHHHHHh
Q 016061 318 LPAIFASRSKYGTPTLSILCSATGVIFLS 346 (396)
Q Consensus 318 lP~~~~~~~~~~~P~~ai~~~~~i~~~~~ 346 (396)
+|++|+|+||+++|++++++..+++.+..
T Consensus 321 lP~~~~~v~~~~~P~~Ail~~~~~~~~~~ 349 (452)
T TIGR01773 321 APRVFMKLNKKGVPVQAVLASTFFSFLTV 349 (452)
T ss_pred cCHHHHhhCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887655
No 18
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=7.7e-47 Score=372.92 Aligned_cols=367 Identities=17% Similarity=0.188 Sum_probs=294.8
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
+++++|+++.+++.++++|.++| |+|..++...+.+|+ ..+++|++++++ .++.+++++|+++..|..|+.|.|+++
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~-~~~~~~s~aEl~s~~~~~~~~~~ya~~ 92 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFM-LFFVMRAMGELLLSNLEYKSFSDFASD 92 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 45699999999999999999999 999887776655888 457999999998 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
.+||..||++||.+++.+....+.++...+.|+..++|.. +.+..+++++.+.+.+|++|.|..+++|.+.+.+++
T Consensus 93 ~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~----~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl 168 (469)
T PRK11049 93 LLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL----SDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKI 168 (469)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998777777777778888777732 234445566778889999999999999999999999
Q ss_pred HHHHHHHHHHhccc----c-C----CCccccc----cccCChHHH---HHHHHHhhchhhhhhhhhccccCCCcchHHHH
Q 016061 173 CPFVVMGILSIPRI----K-P----RRWLVVD----FKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKAL 236 (396)
Q Consensus 173 ~~~~~~~i~~~~~~----~-~----~~~~~~~----~~~~~~~~~---~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 236 (396)
..++.+++.++... + + .++.+.. ..+.++.++ +...+|+|.|+|.+++.+||+|||+|++||++
T Consensus 169 ~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai 248 (469)
T PRK11049 169 VAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAI 248 (469)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHH
Confidence 88877776655321 0 1 1121111 112344433 35679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcC
Q 016061 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (396)
Q Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg 316 (396)
..+...+.+.|++.........|+++...+++|+.+..++.++++...++.+.++++.+++.++.+.+.+|++++|+|||
T Consensus 249 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg 328 (469)
T PRK11049 249 NSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEG 328 (469)
T ss_pred HHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 98888899999999999888888888777778999998888888888899999999999999999999999999999999
Q ss_pred CChhHHhhcCCCCCChHHHHHHHHHHHHHh----h-h----cHHHHHHHHHHH----HHHH----HhhccccCCCC--Cc
Q 016061 317 MLPAIFASRSKYGTPTLSILCSATGVIFLS----W-M----SFQEILEFLNFF----FACS----CYVPRFSKDIH--SK 377 (396)
Q Consensus 317 ~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~----~-~----~~~~l~~~~~~~----~~~~----~~~~~~~~~~~--~~ 377 (396)
.+|++|+|+||+++|++++++..++..+.. . . .++.+.+...+. |.+. ..+||++||.+ ||
T Consensus 329 ~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~p 408 (469)
T PRK11049 329 VAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSI 408 (469)
T ss_pred CCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Confidence 999999999999999999998877654321 1 1 245455554432 2221 23466666654 68
Q ss_pred ccccccchh
Q 016061 378 WWCYYCGVL 386 (396)
Q Consensus 378 ~~~p~~~~~ 386 (396)
||.|+....
T Consensus 409 f~~p~~~~~ 417 (469)
T PRK11049 409 YKMPLGKLM 417 (469)
T ss_pred ccCcCcchH
Confidence 998864433
No 19
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=2.7e-46 Score=368.23 Aligned_cols=366 Identities=17% Similarity=0.195 Sum_probs=287.5
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
+++++|+++.++.++++++.++| |+|..++...+.+|+. .+++|++++++ .++.+++++|+++++|++||.|.|+++
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~-~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVA-AYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45689999999999999999999 9998877765558885 47999999998 999999999999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
.+||.+|++++|.+++.+....+......+.|...++|. .+.+...++++++...+|++|.|..++++.+.+.+++
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~ 157 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT----VPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKV 157 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 999999999999999999887777777778888777763 3333445566677889999999999999999999998
Q ss_pred HHHHHHHHHHhc----c-c---cCCCccc-c---ccccCChHHH---HHHHHHhhchhhhhhhhhccccCCCcchHHHHH
Q 016061 173 CPFVVMGILSIP----R-I---KPRRWLV-V---DFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALL 237 (396)
Q Consensus 173 ~~~~~~~i~~~~----~-~---~~~~~~~-~---~~~~~~~~~~---~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~ 237 (396)
..++++++.++. . . ++.+..+ . ...+.++.+. +...+|+|.|+|.+++.+||+|||+|++||+++
T Consensus 158 ~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~ 237 (457)
T PRK10580 158 ATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAIN 237 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHH
Confidence 877665544321 1 0 1111111 1 1112344333 356799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCC
Q 016061 238 GAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGM 317 (396)
Q Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~ 317 (396)
.+...+.++|+...+......|.++....+.|+....+..+.++...++.+..+.+.+++.++++.+.+|++++|+|||.
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~ 317 (457)
T PRK10580 238 SVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGS 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999998888888887666678888888887777778888888889999999999999999999999999
Q ss_pred ChhHHhhcCCCCCChHHHHHHHHHHHHHhh-------hcHHHHHHHHHHH----HHHH----HhhccccC---CCCCccc
Q 016061 318 LPAIFASRSKYGTPTLSILCSATGVIFLSW-------MSFQEILEFLNFF----FACS----CYVPRFSK---DIHSKWW 379 (396)
Q Consensus 318 lP~~~~~~~~~~~P~~ai~~~~~i~~~~~~-------~~~~~l~~~~~~~----~~~~----~~~~~~~~---~~~~~~~ 379 (396)
+|++|+|+||+++|++++++..++..+... ..++.+.++.++. |.+. ..+||+++ ..++|||
T Consensus 318 lP~~~~kv~~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~ 397 (457)
T PRK10580 318 APKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFK 397 (457)
T ss_pred cCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 999999999999999999988765544321 1244555555532 2222 22344432 2346888
Q ss_pred ccccch
Q 016061 380 CYYCGV 385 (396)
Q Consensus 380 ~p~~~~ 385 (396)
.|...+
T Consensus 398 ~~~~~~ 403 (457)
T PRK10580 398 VPGGVA 403 (457)
T ss_pred cCCccH
Confidence 885333
No 20
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=3.3e-46 Score=370.17 Aligned_cols=363 Identities=18% Similarity=0.168 Sum_probs=282.9
Q ss_pred CCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhhhhhhhhC
Q 016061 18 SPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAFG 95 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~-~Gg~y~~~~~~~g 95 (396)
||+++.+++.+++++.++| |+|..+....+.+||...+++|++++++ .++.+++++|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~-~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSI-IYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 5889999999999999999 9998776665558886668999999998 99999999999999995 5678889999999
Q ss_pred ChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Q 016061 96 PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPF 175 (396)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~ 175 (396)
|.+|++++|.+++++....+......+.++..+.+. .+......++.++.+.+|++|.|..++++.+.+..++..+
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l 155 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK----VNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAI 155 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888888888888766552 2222222345567789999999999999999998888777
Q ss_pred HHHHHHHhccc--c---CC-----Ccccc-ccccC----ChHH---HHHHHHHhhchhhhhhhhhccccCCCcchHHHHH
Q 016061 176 VVMGILSIPRI--K---PR-----RWLVV-DFKKV----DWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALL 237 (396)
Q Consensus 176 ~~~~i~~~~~~--~---~~-----~~~~~-~~~~~----~~~~---~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~ 237 (396)
+.+++.++... + .. ++.+. ..++. .+.+ .+...+|+|.|+|.+++++||+|||+|++||+++
T Consensus 156 ~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~ 235 (478)
T TIGR00913 156 IGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAK 235 (478)
T ss_pred HHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHH
Confidence 66555443211 1 00 11110 11111 1333 3345689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCC--ccc-------cccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 016061 238 GAVVLVVSSYLIPLLAGTGGLTSLS--SEW-------SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQ 308 (396)
Q Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~ 308 (396)
.+..++.++|++..++.....|.++ +.. ..+|+....+..+.++...++.+.++++.+++.++++.+.+|+
T Consensus 236 ~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 315 (478)
T TIGR00913 236 RTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRT 315 (478)
T ss_pred HHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999888888888654 211 1367777778787788888999999999999999999999999
Q ss_pred HHHHhhcCCChhHHhhcCCCCCChHHHHHHHHHHHHHhh-h------cHHHHHHHHHH----HHHHH---H-hhccc---
Q 016061 309 LLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSW-M------SFQEILEFLNF----FFACS---C-YVPRF--- 370 (396)
Q Consensus 309 l~~~a~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~~-~------~~~~l~~~~~~----~~~~~---~-~~~~~--- 370 (396)
+++|+|||.+|++|+|+||+++|++++++..+++.+..+ . .++.+.++.+. .|.+. . .+||+
T Consensus 316 l~a~ardg~lP~~f~k~~~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~ 395 (478)
T TIGR00913 316 LYALAHQGLAPKIFAYVDRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKA 395 (478)
T ss_pred HHHHHhCCcccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888765432 1 25556666553 23322 2 23332
Q ss_pred --cCCCCCcccccccch
Q 016061 371 --SKDIHSKWWCYYCGV 385 (396)
Q Consensus 371 --~~~~~~~~~~p~~~~ 385 (396)
+++.+||||.|+...
T Consensus 396 ~~~~~~~~p~~~~~~~~ 412 (478)
T TIGR00913 396 QGRSLDELPYKSQTGPY 412 (478)
T ss_pred cCCCcccCCccCCCcch
Confidence 334578999887544
No 21
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.9e-45 Score=357.77 Aligned_cols=335 Identities=19% Similarity=0.213 Sum_probs=266.8
Q ss_pred ccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhH
Q 016061 21 LTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWG 99 (396)
Q Consensus 21 l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 99 (396)
+++++.+++.+++++| |+|..|+...+.+|+ ..+++|++++++ .++.+++++|+++++|++||.|.|+++.+||++|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~-~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILL-IFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG 78 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence 5789999999999999 999999888776888 457999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH
Q 016061 100 FQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 179 (396)
++.+|.++..+....+........+....++.. ..+......++.++.+.+|++|+|..+|++.+.....+..+..+.
T Consensus 79 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~ 156 (410)
T PRK11021 79 RVTGWLFLSVIPVGLPAALQIAAGFGQALFGWS--SWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIW 156 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998776665555555566777666632 234445566777888899999999999999987755443322211
Q ss_pred HHHhccccCCCccccccccCChHHH---HHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 016061 180 ILSIPRIKPRRWLVVDFKKVDWRGY---FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTG 256 (396)
Q Consensus 180 i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~ 256 (396)
.....++.++......+.+|.++ +...+|+|.|+|.+++++||+|||+||+||+++.+..++.++|++.+.....
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~ 234 (410)
T PRK11021 157 --WAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLH 234 (410)
T ss_pred --HHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122222221111123455544 3567999999999999999999999999999999999999999999988776
Q ss_pred ccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCCCChHHHH
Q 016061 257 GLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSIL 336 (396)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~P~~ai~ 336 (396)
..+.++....+.|..+..++..+++...++.+..+++.+++.++++.+.+|++++|+|||.+|++|+|+||+++|+++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail 314 (410)
T PRK11021 235 FPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALN 314 (410)
T ss_pred cCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHH
Confidence 66655444445677777888777777777788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh------hcHHHHHHHHHHHH
Q 016061 337 CSATGVIFLSW------MSFQEILEFLNFFF 361 (396)
Q Consensus 337 ~~~~i~~~~~~------~~~~~l~~~~~~~~ 361 (396)
+..+++.+..+ .+++.+.+..+..+
T Consensus 315 ~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~ 345 (410)
T PRK11021 315 AVLGCCAVSILLIYALGLNLEALIAYANGIF 345 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 98877765541 36777877777533
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=2e-45 Score=362.96 Aligned_cols=339 Identities=22% Similarity=0.252 Sum_probs=279.8
Q ss_pred CcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CchhhhhhhhhCC
Q 016061 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPEN-GGYVIWISSAFGP 96 (396)
Q Consensus 19 r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~-Gg~y~~~~~~~g~ 96 (396)
||+++++++++.+++++| |+|..|......+|+...+++|+++++. .++.+++++|+++++|++ ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~-~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVG-MLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 689999999999999999 9999998887668887678999999998 999999999999999996 5999999999999
Q ss_pred hhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhh--hhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHH
Q 016061 97 FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL--LIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (396)
Q Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~ 174 (396)
..|++.+|.+|+++.............+...++|.... +.+......++++....+|.+|.|..+++|.+.+..++++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~ 159 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877777666666777766664422 2334455566677788999999999999999999999988
Q ss_pred HHHHHHHHhccccCCCccc----ccc----ccCChH---HHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHH
Q 016061 175 FVVMGILSIPRIKPRRWLV----VDF----KKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLV 243 (396)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~----~~~----~~~~~~---~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~ 243 (396)
++++++.++...+.+++.+ ... .+..+. ..+...+|+|.|+|.+.+++||.|| +||+||++..+...+
T Consensus 160 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v 238 (468)
T TIGR03810 160 LFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGV 238 (468)
T ss_pred HHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHH
Confidence 8877776654333222211 000 011122 3345679999999999999999998 799999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCccccccH-HHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHH
Q 016061 244 VSSYLIPLLAGTGGLTSLSSEWSDGY-FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIF 322 (396)
Q Consensus 244 ~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~ 322 (396)
.++|++..++.....|+++++..+.| ..+..++..+++...++.+.++++.+++.++++...+|++++|+|||.+|++|
T Consensus 239 ~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f 318 (468)
T TIGR03810 239 LAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYF 318 (468)
T ss_pred HHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 99999999999998888776655555 77888888889999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHhh------hcHHHHHHHHHH
Q 016061 323 ASRSKYGTPTLSILCSATGVIFLSW------MSFQEILEFLNF 359 (396)
Q Consensus 323 ~~~~~~~~P~~ai~~~~~i~~~~~~------~~~~~l~~~~~~ 359 (396)
+|+||+++|++++++..+++.++.. ..++.+.++.+.
T Consensus 319 ~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~ 361 (468)
T TIGR03810 319 GKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS 361 (468)
T ss_pred HhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 9999999999999998887755442 236666666654
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1.9e-45 Score=360.56 Aligned_cols=354 Identities=18% Similarity=0.181 Sum_probs=283.1
Q ss_pred HHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHHHHH
Q 016061 29 LIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKW 107 (396)
Q Consensus 29 l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~~~ 107 (396)
+++|+++| |+|..++...+.+|+. .+++|++++++ .++.+++++|+++++|++||.|.|++|.+||..|+..+|.++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~-~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLL-VVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence 46788999 9998887766558885 67999999998 999999999999999999999999999999999999999999
Q ss_pred HHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhcccc
Q 016061 108 LSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIK 187 (396)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 187 (396)
+.+....+.++...+.+++.+.+ ..+.+..+.+++++.+.+|++|+|..+++|.+.+..+++.++++++.++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~ 155 (446)
T PRK10197 80 WFWVLVIPLEANIAAMILHSWVP----GIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAIS 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc----cCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998888887777777776655 34455667788888999999999999999999999999887776665543211
Q ss_pred ---C----CCcccc----ccccCChHHHH---HHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 016061 188 ---P----RRWLVV----DFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (396)
Q Consensus 188 ---~----~~~~~~----~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~ 253 (396)
+ .++.+. ...+.++.++. ...+|+|.|+|..++.+||+|||+|++||++..+...+.++|++..+.
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 156 GFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred CCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111 11133444443 567899999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCccc-cccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCCCCh
Q 016061 254 GTGGLTSLSSEW-SDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPT 332 (396)
Q Consensus 254 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~P~ 332 (396)
.....|+++.+. ...+.....+..++++...++.+.++++.+++.++++.+.+|++++++|||.+|++|+|+||+++|+
T Consensus 236 ~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~ 315 (446)
T PRK10197 236 VVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTPY 315 (446)
T ss_pred HheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcH
Confidence 999888875332 2346677788888888888999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh-------cHHHHHHHHHHH----HHHH----Hhhccc--cCCCCCcccccccchhhh
Q 016061 333 LSILCSATGVIFLSWM-------SFQEILEFLNFF----FACS----CYVPRF--SKDIHSKWWCYYCGVLII 388 (396)
Q Consensus 333 ~ai~~~~~i~~~~~~~-------~~~~l~~~~~~~----~~~~----~~~~~~--~~~~~~~~~~p~~~~~~~ 388 (396)
+++++..+++.+..+. .++.++++.++. |.+. +.+||+ +++.++|||.|+..+.-.
T Consensus 316 ~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~ 388 (446)
T PRK10197 316 VAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTW 388 (446)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHH
Confidence 9999998776654421 367777766643 2222 234443 345577899886544433
No 24
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=4.5e-43 Score=346.83 Aligned_cols=369 Identities=15% Similarity=0.091 Sum_probs=269.5
Q ss_pred cccCCCCcccchhHHHHHHhhh-cc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhh
Q 016061 13 KAAKTSPKLTVLPLIALIFYEV-SG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (396)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~-~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~ 90 (396)
.+++++|++|.++.++++++.+ ++ |++..+....+.+|+ ..+++|+++++. .++.+++++|+++++|++||.|+|+
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~-~l~~als~aEL~s~~P~aGG~Y~~~ 84 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVG-QLLVALNFAELAARYPISGAIYQWS 84 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCCHHHHH
Confidence 3567999999999999999986 66 888887777665888 568999999998 9999999999999999999999999
Q ss_pred hhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh---------hh---hhhhHHHHHHHHHHHHHHHHHhhhh
Q 016061 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI---------FN---LLIARIPALLGITGALTYLNYRGLH 158 (396)
Q Consensus 91 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 158 (396)
++.+||.+|+++||.+++++....+........++..+.+. .. ..++......++.++.+.+|++|.|
T Consensus 85 ~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 85 RRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999998876665555554444332210 00 0123456666777888999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhccccCCC---cccc-ccccCChHH-H---HHHHHHhhchhhhhhhhhccccCCCc
Q 016061 159 IVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR---WLVV-DFKKVDWRG-Y---FNSMFWNLNYWDKASTLAGEVENPSK 230 (396)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---~~~~-~~~~~~~~~-~---~~~~~~~~~G~e~~~~~~~E~k~p~k 230 (396)
...+++.+....++..++++++..+...+.++ +... ...+.++.. + ....+|+|.|+|.+++++||+|||+|
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r 244 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRR 244 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcch
Confidence 99999999999998777666655543332111 1111 111122222 2 23468999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---ccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhH
Q 016061 231 TFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS---SEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAF 307 (396)
Q Consensus 231 ~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR 307 (396)
++||++..+..+..+.|.+..+......++.+ ......|. ...+..++.....+...++++.+++.++.+.+.+|
T Consensus 245 ~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~sR 322 (475)
T TIGR03428 245 VAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPY--VLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAGSR 322 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHH--HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888777776665421 22223343 33333333233444556677889999999999999
Q ss_pred HHHHHhhcCCCh--hHHhhcC-CCCCChHHHHHHHHHHHHHhhh------cHHHHHHHHHH----HHHH---HHhhcccc
Q 016061 308 QLLGMSEMGMLP--AIFASRS-KYGTPTLSILCSATGVIFLSWM------SFQEILEFLNF----FFAC---SCYVPRFS 371 (396)
Q Consensus 308 ~l~~~a~dg~lP--~~~~~~~-~~~~P~~ai~~~~~i~~~~~~~------~~~~l~~~~~~----~~~~---~~~~~~~~ 371 (396)
++++++|||.+| ++|+|+| |+++|++++++..+++.++.+. .|+.+.++... .|.+ ..+.||++
T Consensus 323 ~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~ 402 (475)
T TIGR03428 323 LMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLR 402 (475)
T ss_pred HHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999 4899999 5899999999999888766632 35566666553 3333 23333321
Q ss_pred ---C----CCCCcccccccch
Q 016061 372 ---K----DIHSKWWCYYCGV 385 (396)
Q Consensus 372 ---~----~~~~~~~~p~~~~ 385 (396)
+ ..++||+.+.++.
T Consensus 403 ~~~~~~~~~~~g~f~lg~~g~ 423 (475)
T TIGR03428 403 GWPRGDQTDPAGLFSLGRWGL 423 (475)
T ss_pred ccCCccCCCCCCCCCCchhHH
Confidence 1 2457888774443
No 25
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=5.7e-43 Score=342.66 Aligned_cols=356 Identities=27% Similarity=0.449 Sum_probs=289.0
Q ss_pred ccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhH
Q 016061 21 LTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWG 99 (396)
Q Consensus 21 l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g 99 (396)
+|+++.+++.++.+.| |++..+ ...+ +|+. .+++|++++++..++.+++|+|+++++|++||.|.|+++.+||+.|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~-~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAAS-AGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTC-TGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHH-HhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 5889999999999999 777766 4444 7885 5688888888733899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHhch-hh-hhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH-HHHH
Q 016061 100 FQEGFWKWLSGVLDNALYPVLFLDYLKHSLP-IF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL-CPFV 176 (396)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i-~~~~ 176 (396)
++.+|.+++.+....+.......+++...++ .. +++++...+++++++....+|++|.|..+|++.+...+++ ..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~ 157 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLL 157 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhh
Confidence 9999999999999998888889999887754 22 2245677778888999999999999999999999999999 5766
Q ss_pred HHHHHHhccccCCCcc-----ccccccCChH---HHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHH
Q 016061 177 VMGILSIPRIKPRRWL-----VVDFKKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL 248 (396)
Q Consensus 177 ~~~i~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~ 248 (396)
++++.++...+.+... ..+..+.++. ..+...+|+|.|+|+.++++||.|| |++||+++.+..++.++|+
T Consensus 158 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~ 235 (426)
T PF13520_consen 158 VLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYI 235 (426)
T ss_dssp HHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHH
T ss_pred hheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHh
Confidence 7776666654433221 0111122333 3335679999999999999999777 8999999999999999999
Q ss_pred HHHHHHHhccCCCCcccc---ccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhc
Q 016061 249 IPLLAGTGGLTSLSSEWS---DGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASR 325 (396)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~ 325 (396)
+..+......|+++.+.. .++.....++.++++...++.+...++.+++.++.+.+.+|++++|+|||.+|++|+|+
T Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~ 315 (426)
T PF13520_consen 236 LFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKV 315 (426)
T ss_dssp HHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTT
T ss_pred hhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhc
Confidence 999999999998875443 23688889999888999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHh--h-----hcHHHHHHHHHHHHH----H---H-HhhccccCCCCC-ccccc
Q 016061 326 SKYGTPTLSILCSATGVIFLS--W-----MSFQEILEFLNFFFA----C---S-CYVPRFSKDIHS-KWWCY 381 (396)
Q Consensus 326 ~~~~~P~~ai~~~~~i~~~~~--~-----~~~~~l~~~~~~~~~----~---~-~~~~~~~~~~~~-~~~~p 381 (396)
||+++|++++++..+++.++. . .+++.+.+..++.+. + + ...|||+||.+| +++.|
T Consensus 316 ~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 387 (426)
T PF13520_consen 316 NKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKRIPYRPP 387 (426)
T ss_dssp SSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH-HHHHH
T ss_pred cccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCCcchH
Confidence 999999999999999985553 1 246777777764222 2 2 345666777777 65544
No 26
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-43 Score=325.08 Aligned_cols=364 Identities=17% Similarity=0.186 Sum_probs=311.6
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-ccc-CchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f-~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~ 91 (396)
+++++|.++.++...+++|..+| |.| +....++. +||. .++++++++++ .+.+..+..|+..+-|++|+..+|++
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPS-vlLaY~I~G~~-~f~iMRaLGEm~~~~p~~gSF~~~a~ 84 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPS-VLLAYLIAGIF-VFLIMRALGEMLVANPVSGSFSDYAR 84 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcH-HHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 45689999999999999999999 876 66677777 9994 57999999998 99999999999999999999999999
Q ss_pred hhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 016061 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 92 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (396)
+.+||+.||+++|.||+.+.....+.....+.|++.++| +.|.|+.+++.+++...+|..++|..++...++..+|
T Consensus 85 ~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP----~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIK 160 (462)
T COG1113 85 KYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP----DVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIK 160 (462)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 4688889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc-----ccC------CCccc-cccccCChHHHH---HHHHHhhchhhhhhhhhccccCCCcchHHHH
Q 016061 172 LCPFVVMGILSIPR-----IKP------RRWLV-VDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKAL 236 (396)
Q Consensus 172 i~~~~~~~i~~~~~-----~~~------~~~~~-~~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 236 (396)
++.++.+++.++.. ..+ +|..+ -+.-|.|+.+++ ...+|+|.|.|.....+.|.|||+|++|||+
T Consensus 161 V~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAi 240 (462)
T COG1113 161 VAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAI 240 (462)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHH
Confidence 99888877766521 111 12222 122366777755 5679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcC
Q 016061 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (396)
Q Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg 316 (396)
.....-..++|+...+++....|+++.....+|+...++..+.++..-+++++++.+.++++|+.+.+.+|++|.+++||
T Consensus 241 n~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g 320 (462)
T COG1113 241 NSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQG 320 (462)
T ss_pred hhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcC
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHhhcCCCCCChHHHHHHHHHHHHHhhhc-------HHHHHHHHHHHH-------HHHHh-hccccC--CCCCccc
Q 016061 317 MLPAIFASRSKYGTPTLSILCSATGVIFLSWMS-------FQEILEFLNFFF-------ACSCY-VPRFSK--DIHSKWW 379 (396)
Q Consensus 317 ~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~-------~~~l~~~~~~~~-------~~~~~-~~~~~~--~~~~~~~ 379 (396)
..|+.++|+||+++|+++++++.+...+....+ |+-+.+..++.. .++.+ +||+++ ..+.+||
T Consensus 321 ~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fk 400 (462)
T COG1113 321 DAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFK 400 (462)
T ss_pred cccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCcccc
Confidence 999999999999999999999988877666322 444444444322 22333 344323 2445788
Q ss_pred ccccc
Q 016061 380 CYYCG 384 (396)
Q Consensus 380 ~p~~~ 384 (396)
+|+..
T Consensus 401 m~~~p 405 (462)
T COG1113 401 MPLYP 405 (462)
T ss_pred ccccc
Confidence 77543
No 27
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=2e-42 Score=343.38 Aligned_cols=369 Identities=16% Similarity=0.189 Sum_probs=269.4
Q ss_pred cccCCCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhh
Q 016061 13 KAAKTSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (396)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~ 90 (396)
.+++++|+++.++.++++++.+.. |++.........+|+...+++|++++++ .++.+++++|+++++|++||.|+|+
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~-~l~~~~~~aEl~s~~P~~Gg~y~~~ 84 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAG-SICIALSLAELSSAYPTSGGQYFWS 84 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHH-HHHHHHHHHHHHhhCCCCccHHHHH
Confidence 355689999999999999996632 4554433333337886667999999998 9999999999999999999999999
Q ss_pred hhhhC----ChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh------h-hhhhhHHHHHHHHHHHHHHHHHhhhhH
Q 016061 91 SSAFG----PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI------F-NLLIARIPALLGITGALTYLNYRGLHI 159 (396)
Q Consensus 91 ~~~~g----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~g~~~ 159 (396)
++.+| +..||+++|.+++.+....+......++++...+.. . .+++....+.+++.++.+.+|++|.|.
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~ 164 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKW 164 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhH
Confidence 99987 567999999999999988888877777777654321 1 112334455566778889999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcccc----CCC--ccccc-----cccCChHHH--HHHHHHhhchhhhhhhhhcccc
Q 016061 160 VGFSAVSLLVFSLCPFVVMGILSIPRIK----PRR--WLVVD-----FKKVDWRGY--FNSMFWNLNYWDKASTLAGEVE 226 (396)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~----~~~--~~~~~-----~~~~~~~~~--~~~~~~~~~G~e~~~~~~~E~k 226 (396)
..+++.+....+++.++++.+..+...+ ..+ +.+.. ..+.++... +....|+|.|+|.+++++||+|
T Consensus 165 ~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~k 244 (482)
T TIGR00907 165 LPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIE 244 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcC
Confidence 9999999988887766644443332211 111 11111 112233222 2345799999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCcccc--ccHHHHHHHHhchh-HHHHHHHHHHHHHhHHHHHHHh
Q 016061 227 NPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTS-LSSEWS--DGYFAEVGMLIGGF-WLKWWIQAASAMSNLGLFEAEM 302 (396)
Q Consensus 227 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~ 302 (396)
||+|++||++..++.+..+.+++..+......++ ++..++ +.|+.+.+++..+. +...++...++++.+++.++++
T Consensus 245 nP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 324 (482)
T TIGR00907 245 NPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCM 324 (482)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776665555444444332 222222 25888887765444 6777777888888999999999
Q ss_pred hhhhHHHHHHhhcCCCh--hHHhhcCC-CCCChHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHH----H---Hh
Q 016061 303 SGDAFQLLGMSEMGMLP--AIFASRSK-YGTPTLSILCSATGVIFLSWM------SFQEILEFLNFFFAC----S---CY 366 (396)
Q Consensus 303 ~~~sR~l~~~a~dg~lP--~~~~~~~~-~~~P~~ai~~~~~i~~~~~~~------~~~~l~~~~~~~~~~----~---~~ 366 (396)
.+.+|++++|+|||.+| ++|+|+|| +++|++++++..+++.++.+. .++.++++.++.+.+ . .+
T Consensus 325 ~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l 404 (482)
T TIGR00907 325 TANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKL 404 (482)
T ss_pred HHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999997 599999999999888765522 466777766643322 2 22
Q ss_pred hccccCCCCCcccccc
Q 016061 367 VPRFSKDIHSKWWCYY 382 (396)
Q Consensus 367 ~~~~~~~~~~~~~~p~ 382 (396)
.+||+++.+||||.+.
T Consensus 405 ~~~~~~~~~~~f~lg~ 420 (482)
T TIGR00907 405 AKGRNTIAPGPFWLGK 420 (482)
T ss_pred HhcCCCCCCCCCcCCc
Confidence 2333446778999854
No 28
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=9.5e-42 Score=337.52 Aligned_cols=360 Identities=22% Similarity=0.276 Sum_probs=259.9
Q ss_pred CcccchhHHHHHHhhhcccccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChh
Q 016061 19 PKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFW 98 (396)
Q Consensus 19 r~l~~~~~~~l~~~~~~Gg~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~ 98 (396)
||++.++++.+.+..+.+ +...| ..+. .|+ ..++.|+++++++.++.+++++|+++++|++||.|.|+++.+||++
T Consensus 1 ~~~~~~~l~~~~~~~v~~-~~~~~-~~a~-~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~ 76 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS-LRGLP-AEAE-YGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARW 76 (474)
T ss_pred CcccHHHHHHHHHHHHHH-hhcch-HHHH-hhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhH
Confidence 569999999999887765 11223 3344 777 4568899999874678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch------hh-hhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH-
Q 016061 99 GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP------IF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF- 170 (396)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~- 170 (396)
|++.+|.+|+++....+......+..+....+ .. .+.+......+++.+..+.+|++|+|..++++.+...+
T Consensus 77 gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~ 156 (474)
T TIGR03813 77 GFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVG 156 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 99999999999876655443333333322211 11 11222334456666778889999999999999876544
Q ss_pred HHHHHHHHHHHHhccc---cCC----CccccccccCChHHHH--HHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHH
Q 016061 171 SLCPFVVMGILSIPRI---KPR----RWLVVDFKKVDWRGYF--NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVV 241 (396)
Q Consensus 171 ~i~~~~~~~i~~~~~~---~~~----~~~~~~~~~~~~~~~~--~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~ 241 (396)
++++++++++.++... ++. ++.+..++..++.... ...+|+|.|+|.++..+||+|||+|++||++..+..
T Consensus 157 ~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~ 236 (474)
T TIGR03813 157 TIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAAL 236 (474)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHH
Confidence 3444444444433211 111 1111111111222222 345789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccc---HHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCC
Q 016061 242 LVVSSYLIPLLAGTGGLTSLSSEWSDG---YFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (396)
Q Consensus 242 ~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~l 318 (396)
++.++|++.+++.....|+++.....+ ++.+..+..+.++...++.+...++.+++.++++.+.+|++++++|||.+
T Consensus 237 ~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~l 316 (474)
T TIGR03813 237 GTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYL 316 (474)
T ss_pred HHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999998877543332 34455555566777777777888889999999999999999999999999
Q ss_pred hhHHhhcCCCCCChHHHHHHHHHHHHHh--h---hc----HHHHHHHHHHHH----HHH----HhhccccCCCCCccccc
Q 016061 319 PAIFASRSKYGTPTLSILCSATGVIFLS--W---MS----FQEILEFLNFFF----ACS----CYVPRFSKDIHSKWWCY 381 (396)
Q Consensus 319 P~~~~~~~~~~~P~~ai~~~~~i~~~~~--~---~~----~~~l~~~~~~~~----~~~----~~~~~~~~~~~~~~~~p 381 (396)
|++|+|+||+++|+++++++.+++.++. . .+ ++.+.++.+..+ .+. ..+|||+|+.+||||.|
T Consensus 317 P~~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p 396 (474)
T TIGR03813 317 PTFFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIP 396 (474)
T ss_pred CHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEec
Confidence 9999999999999999999987754433 1 12 455555555433 221 23466778889999998
Q ss_pred c
Q 016061 382 Y 382 (396)
Q Consensus 382 ~ 382 (396)
.
T Consensus 397 ~ 397 (474)
T TIGR03813 397 G 397 (474)
T ss_pred C
Confidence 6
No 29
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=327.93 Aligned_cols=374 Identities=17% Similarity=0.166 Sum_probs=309.4
Q ss_pred CCCCcccchhHHHHHHhhhcc-ccc-CchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhh
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~f-~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~ 93 (396)
++||++..+++.++++|..+| |.| +....+.+ +||...++++++.+.+ ..++..+..|++..+|.+|+..+|++|.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~-vy~vm~sLGEma~~~P~sGsF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIM-VYFVMQSLGELAVFYPVSGSFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCchhhhhhhh
Confidence 589999999999999999999 887 55666677 9999999999999998 9999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Q 016061 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (396)
Q Consensus 94 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~ 173 (396)
.+|-+|+..||.||+.|....+.....++..++.+.|. ..+.+....++.+++..+|..++|..+....++..+|++
T Consensus 119 vdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~---~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~ 195 (541)
T COG0833 119 VDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD---TVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVL 195 (541)
T ss_pred cCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC---CCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHH
Confidence 99999999999999999999999999999999999873 245556667888999999999999999999999999999
Q ss_pred HHHHHHHHHhccc------c----CCCccccccccCChHHHH---HHHHHhhchhhhhhhhhccccCCCcchHHHHHHHH
Q 016061 174 PFVVMGILSIPRI------K----PRRWLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (396)
Q Consensus 174 ~~~~~~i~~~~~~------~----~~~~~~~~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~ 240 (396)
.++.+++.++... + .+.+.+...-+.++.++. ..+.|+|.|.|...-.+.|.|||+|++|||+-...
T Consensus 196 ~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vf 275 (541)
T COG0833 196 TIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVF 275 (541)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHH
Confidence 8888777665321 1 111221111233444443 45688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCC--c------cccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Q 016061 241 VLVVSSYLIPLLAGTGGLTSLS--S------EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM 312 (396)
Q Consensus 241 ~~~~~~y~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~ 312 (396)
.-+.++|++..+.+...+|+++ + ....+|+..+.++.+.+...-+++.+++.+++++.|+.+.+.+|++++|
T Consensus 276 wRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sL 355 (541)
T COG0833 276 WRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSL 355 (541)
T ss_pred HHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 9999999999999999999866 2 1345799999999999999999999999999999999999999999999
Q ss_pred hhcCCChhHHhhcCCCCCChHHHHHHHHHHHHHhhh-------cHHHHHHHHHH---HH----HHHHh-hccc----cCC
Q 016061 313 SEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWM-------SFQEILEFLNF---FF----ACSCY-VPRF----SKD 373 (396)
Q Consensus 313 a~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~l~~~~~~---~~----~~~~~-~~~~----~~~ 373 (396)
|+||..|+.|+|+||+|.|.+|+.+..+.+.+..+. -++.|.++.+. +. +++.+ .||. .++
T Consensus 356 A~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s 435 (541)
T COG0833 356 AKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRS 435 (541)
T ss_pred HhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999998887665521 25666666654 22 22322 2331 122
Q ss_pred -CCCcccccccchhhhhccccc
Q 016061 374 -IHSKWWCYYCGVLIISCSSSC 394 (396)
Q Consensus 374 -~~~~~~~p~~~~~~~~~~~~~ 394 (396)
.+-|||.|+..+.-+.....|
T Consensus 436 ~~~L~yks~~~p~g~~~~~~~~ 457 (541)
T COG0833 436 LDELPYKSPFGPYGPIYGLILC 457 (541)
T ss_pred hhhcCccCCCccHHHHHHHHHH
Confidence 346899888776655554444
No 30
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-41 Score=334.95 Aligned_cols=369 Identities=22% Similarity=0.296 Sum_probs=300.5
Q ss_pred cccCCCCcccchh-HHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhh
Q 016061 13 KAAKTSPKLTVLP-LIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI 90 (396)
Q Consensus 13 ~~~~~~r~l~~~~-~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~ 90 (396)
++++++|+++.++ ...+..+.++| |+|..+......+ +.. .++|++++++ ..+.+++++|+++++|++||.|.|+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~-~~~~li~~~~-~~~~a~~~~el~~~~p~~GG~y~~~ 82 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAA-ILAWLIAGII-ILFLALSYAELSSAIPSAGGAYAYA 82 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHH-HHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCeeeeh
Confidence 3566788999999 88889999999 8888887776634 333 3558888887 7777999999999999999999999
Q ss_pred hhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh---hhhh-hhHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Q 016061 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPI---FNLL-IARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (396)
Q Consensus 91 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (396)
++.+||+.|+.++|.+++++....+..+.....++...++. ...+ +....++.++.++...+|++|.|...+++.+
T Consensus 83 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 83 KRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999988888873 2222 5677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCcccccc---ccCChH---HHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHH
Q 016061 167 LLVFSLCPFVVMGILSIPRIKPRRWLVVDF---KKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (396)
Q Consensus 167 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~ 240 (396)
....++++++.+++.++...+.++...... ....+. ..+...+|+|.|+|.+++++||+|||+|++||+++.+.
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~ 242 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSL 242 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHH
Confidence 999999999988888776655443222111 111122 22355699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccc-cc-cHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCC
Q 016061 241 VLVVSSYLIPLLAGTGGLTSLSSEW-SD-GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGML 318 (396)
Q Consensus 241 ~~~~~~y~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~l 318 (396)
..+.++|++.........++++... .. .|..+..+...+.+...++.+....+.+++.+++..+.+|.+++|+|||.+
T Consensus 243 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~l 322 (466)
T COG0531 243 LIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLL 322 (466)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999988754322 22 688888888888889999999999999999999999999999999999999
Q ss_pred hhHHhhcCC-CCCChHHHHHHHHHHH-HHhhh-----cHHHHHHHHHHHH----HHH----HhhccccCCCCCccccccc
Q 016061 319 PAIFASRSK-YGTPTLSILCSATGVI-FLSWM-----SFQEILEFLNFFF----ACS----CYVPRFSKDIHSKWWCYYC 383 (396)
Q Consensus 319 P~~~~~~~~-~~~P~~ai~~~~~i~~-~~~~~-----~~~~l~~~~~~~~----~~~----~~~~~~~~~~~~~~~~p~~ 383 (396)
|++|+|+|| +++|++++++..+++. +.... .++.+.++.+..+ .+. ..+|||+++.+|++|.|..
T Consensus 323 P~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG0531 323 PKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLA 402 (466)
T ss_pred cHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Confidence 999999996 6799999999999988 33322 2566777666433 222 2345666677777776654
Q ss_pred c
Q 016061 384 G 384 (396)
Q Consensus 384 ~ 384 (396)
.
T Consensus 403 ~ 403 (466)
T COG0531 403 P 403 (466)
T ss_pred c
Confidence 3
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=4.9e-41 Score=349.89 Aligned_cols=349 Identities=16% Similarity=0.114 Sum_probs=277.0
Q ss_pred ccCCCCcccchhHHHHH-Hhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCchhhhh
Q 016061 14 AAKTSPKLTVLPLIALI-FYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATS-FPENGGYVIWI 90 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~-~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~-~p~~Gg~y~~~ 90 (396)
++..++++|+++.+++- +++++| ++|..++.+...+|....++.|++++++ +++.+++++|+++. +|++||.|.|+
T Consensus 71 ~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~v-tlltaLS~seiaTng~p~aGG~Y~yi 149 (953)
T TIGR00930 71 PPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCV-TTITGLSMSAIATNGVVKGGGAYYLI 149 (953)
T ss_pred CCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 34567899999999996 999999 8998888887658877678899999998 99999999999998 99999999999
Q ss_pred hhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhh-----h-hhHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 016061 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL-----L-IARIPALLGITGALTYLNYRGLHIVGFSA 164 (396)
Q Consensus 91 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 164 (396)
+|.+|+.+|+..||.+++++....+.++.+.++|+..+++.... + ....+++.+++++++.+|+.|.|..+|+|
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q 229 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQ 229 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999888753211 1 11245567888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC-----------C----CccccccccC-ChHHHHHHHHHhhchhhhhhhhhccccCC
Q 016061 165 VSLLVFSLCPFVVMGILSIPRIKP-----------R----RWLVVDFKKV-DWRGYFNSMFWNLNYWDKASTLAGEVENP 228 (396)
Q Consensus 165 ~~~~~~~i~~~~~~~i~~~~~~~~-----------~----~~~~~~~~~~-~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 228 (396)
.+++.++++.++.+.+.++..... . |+.|...... ++...+...+++|+|+|+.+++++|+|||
T Consensus 230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP 309 (953)
T TIGR00930 230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP 309 (953)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 999999988877766655432110 0 1111000011 14445566778999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc------------------HHH-----HHHHHhchhHHHHH
Q 016061 229 SKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDG------------------YFA-----EVGMLIGGFWLKWW 285 (396)
Q Consensus 229 ~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~------------------~~~-----~~~~~~~~~~~~~~ 285 (396)
+|++||+++.++.+++++|+++.+......+.+....... |.. ............++
T Consensus 310 ~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~~~~l 389 (953)
T TIGR00930 310 QKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFPPL 389 (953)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhhhHHH
Confidence 9999999999999999999999988777776543221110 000 00011111225577
Q ss_pred HHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCCh--hHHhhcC-CCCCChHHHHHHHHHHHHHh-hhcHHHHHHHHHHHH
Q 016061 286 IQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP--AIFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFFF 361 (396)
Q Consensus 286 ~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP--~~~~~~~-~~~~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~~~~ 361 (396)
+.+.++.+++++.++++.+.+|++++|+|||.+| ++|+|+| |+++|++++++..+++.++. +.+++.+..+.+..+
T Consensus 390 I~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~f 469 (953)
T TIGR00930 390 ITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFF 469 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999 8999999 58999999999999998877 567888888777544
Q ss_pred HH
Q 016061 362 AC 363 (396)
Q Consensus 362 ~~ 363 (396)
.+
T Consensus 470 Ll 471 (953)
T TIGR00930 470 LA 471 (953)
T ss_pred HH
Confidence 33
No 32
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=2.7e-40 Score=327.98 Aligned_cols=361 Identities=20% Similarity=0.225 Sum_probs=255.4
Q ss_pred CCCcccchhHHHHHHhhhcccccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCchhhhhhhhhC
Q 016061 17 TSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP-ENGGYVIWISSAFG 95 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~Gg~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p-~~Gg~y~~~~~~~g 95 (396)
.+||++.++++++.++.+.+ +...| ..++ .|.. .+.-|+++++++.+|.+++++|+++++| ++||.|.|+++.+|
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~-~~~~~-~~a~-~G~~-~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA-VYEYP-TFAT-SGFH-LVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH-HHhhH-HHHH-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 46789999999999988764 23444 3334 5663 3466777777667899999999999997 89999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhHhHHH---HHHHHHHHHhchhhh-hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 016061 96 PFWGFQEGFWKWLSGVLDNALYP---VLFLDYLKHSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (396)
|++|++++|.+|+......+... .....|... .+... +++......+++++..+++|++|.|..++++.+.....
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~ 156 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAG 156 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999998765443332 222233321 12221 23344555566778889999999999999998866544
Q ss_pred H-HHHHHHHHHHhccc---cCC----Cccccccc--cCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHH
Q 016061 172 L-CPFVVMGILSIPRI---KPR----RWLVVDFK--KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVV 241 (396)
Q Consensus 172 i-~~~~~~~i~~~~~~---~~~----~~~~~~~~--~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~ 241 (396)
+ ++.+++++.+.... ++. +..++.+. ..+....+...+|+|.|+|.+++.+||+|||+|++||+++.+..
T Consensus 157 ~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i 236 (507)
T TIGR00910 157 ILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMI 236 (507)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHH
Confidence 3 33333333332221 111 11111111 11222233456889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccc---HHHHHHHHhch--hHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcC
Q 016061 242 LVVSSYLIPLLAGTGGLTSLSSEWSDG---YFAEVGMLIGG--FWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (396)
Q Consensus 242 ~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg 316 (396)
++.++|.+..+......|+++...++. ++.+..+...+ ++...++.+..+++.+++.++++.+.+|.+++++|||
T Consensus 237 ~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg 316 (507)
T TIGR00910 237 AAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKG 316 (507)
T ss_pred HHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999998888877888777554333 33344444433 4666677778888899999999999999999999999
Q ss_pred CChhHHhhcCCCCCChHHHHHHHHHHHHHhh--h--------cHHHHHHHHHH----HHHHH----HhhccccCCCCCcc
Q 016061 317 MLPAIFASRSKYGTPTLSILCSATGVIFLSW--M--------SFQEILEFLNF----FFACS----CYVPRFSKDIHSKW 378 (396)
Q Consensus 317 ~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~~--~--------~~~~l~~~~~~----~~~~~----~~~~~~~~~~~~~~ 378 (396)
.+|++|+|+||+++|+++++++.+++.++.+ . .++.++++.+. .|.+. ..+|||+||.+|||
T Consensus 317 ~lP~~~~k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf 396 (507)
T TIGR00910 317 LLPAAFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTF 396 (507)
T ss_pred CcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCe
Confidence 9999999999999999999999888766431 1 13333333333 33322 23567788999999
Q ss_pred cccc
Q 016061 379 WCYY 382 (396)
Q Consensus 379 ~~p~ 382 (396)
|.|.
T Consensus 397 ~~pg 400 (507)
T TIGR00910 397 NIPG 400 (507)
T ss_pred EecC
Confidence 9985
No 33
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-41 Score=332.40 Aligned_cols=343 Identities=20% Similarity=0.242 Sum_probs=274.7
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhH-hhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDS-VKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWI 90 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~-~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~-~Gg~y~~~ 90 (396)
+++++|+++++|+.++++|.++| |.|...+. ..+ +||...+++++++++. +++.+++++|++.++|. +||.|.|.
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~-~gp~s~iisf~i~g~~-~~~~~~~~~E~~~~~P~~aGs~~~ya 102 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRN-GGPPSLLISFIIAGIA-ALLSALCLGEFAVRFPVSAGSFYTYA 102 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhc-cCChhHHHHHHHHHHH-HHHHHHHHHHHheecccccccceeee
Confidence 35899999999999999999999 88855544 455 6666778999999998 99999999999999999 49999999
Q ss_pred hhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc---------hhhh--hhhhHHHHHHHHHHHHHHHHHhhhhH
Q 016061 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL---------PIFN--LLIARIPALLGITGALTYLNYRGLHI 159 (396)
Q Consensus 91 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~ 159 (396)
++..|+.+||..+|.+++.|+...+.++.+.+.+++.+. +..+ ...+..+..++++.+..+..+.+.|.
T Consensus 103 ~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 103 YRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 999999999999999999999999999999999999986 2211 11222222222323333334467777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccccCCCcccc-------ccccCChHH---HHHHHHHhhchhhhhhhhhccccCCC
Q 016061 160 VGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVV-------DFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPS 229 (396)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~p~ 229 (396)
...++.+++.+.++++..++.+|....|+.++... ...+.++.+ .+....|+|.|+|..+..+||.|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 88888888888887777777777766665444321 122333443 44567999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--ccccccHHHHHHH-HhchhHHHH---HHHHHHHHHhHHHHHHHhh
Q 016061 230 KTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS--SEWSDGYFAEVGM-LIGGFWLKW---WIQAASAMSNLGLFEAEMS 303 (396)
Q Consensus 230 k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~s~~~~~~ 303 (396)
|++|+++..++..+.++|++..+.+....|+++ +.... +....+. .....+... +++++++.+..++.++.+.
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~-~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y 341 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGA-ALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLY 341 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCC-ccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999977 44322 3333333 334444445 9999999999999999999
Q ss_pred hhhHHHHHHhhcCCChhHHhhcCCCCCChHHHHHHHHHHHHHh-hhc------HHHHHHHHHH
Q 016061 304 GDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLS-WMS------FQEILEFLNF 359 (396)
Q Consensus 304 ~~sR~l~~~a~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~-~~~------~~~l~~~~~~ 359 (396)
..+|.+++|+|||++|++|+++||+++|.++++.....+.+.. ..+ |+.|+++.+.
T Consensus 342 ~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si 404 (554)
T KOG1286|consen 342 AGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI 404 (554)
T ss_pred HhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH
Confidence 9999999999999999999999988999999999998887766 333 5888888885
No 34
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=3.5e-38 Score=313.47 Aligned_cols=360 Identities=16% Similarity=0.167 Sum_probs=247.4
Q ss_pred CCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhhhhhhhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAF 94 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 94 (396)
++||+|+++++.+.++.++| + ..|..... .|+.. ++.|+++++++.++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~-~G~~~-i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYL-MGYSA-IPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHH-cChHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 47889999999999999998 3 23444555 78754 4666666665478999999999999997 799999999999
Q ss_pred CChhHHHHHHHHHHHHhhhHhHHHHHHHH-HHHHhchhh----------hhhhhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 016061 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLD-YLKHSLPIF----------NLLIARIPALLGITGALTYLNYRGLHIVGFS 163 (396)
Q Consensus 95 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 163 (396)
||++|++.+|.++..+............. .....++.. ..+......+++++++.+++|.+|+|..+++
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i 160 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKV 160 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 99999999999888776554333221111 111111100 1111222445556567889999999999999
Q ss_pred hHHHHHHHHHHHHHHHH---HHh-ccc-c---CCCccccc---ccc----CChHHHHHHHHHhhchhhhhhhhhccccCC
Q 016061 164 AVSLLVFSLCPFVVMGI---LSI-PRI-K---PRRWLVVD---FKK----VDWRGYFNSMFWNLNYWDKASTLAGEVENP 228 (396)
Q Consensus 164 ~~~~~~~~i~~~~~~~i---~~~-~~~-~---~~~~~~~~---~~~----~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 228 (396)
+.+.+..++...+++.+ ..+ ... + +.+..++. .++ .++...+....|+|.|+|..++.+||+|||
T Consensus 161 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p 240 (496)
T PRK15238 161 TSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENP 240 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCC
Confidence 99887776543222111 111 111 1 11111110 011 112223355689999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc------ccHHHHHHHH-----------------hchhHHHHH
Q 016061 229 SKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWS------DGYFAEVGML-----------------IGGFWLKWW 285 (396)
Q Consensus 229 ~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----------------~~~~~~~~~ 285 (396)
+|++||++..+...+.++|++..+.+....|+++...+ ..|.. ..+. ..+++...+
T Consensus 241 ~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~ 319 (496)
T PRK15238 241 EKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWFARI 319 (496)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHHHHH
Confidence 99999999999999999999998887777666553221 12221 1121 123455556
Q ss_pred HHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCCCChHHHHHHHHHHHHHh-hh--c-------HHHHHH
Q 016061 286 IQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLS-WM--S-------FQEILE 355 (396)
Q Consensus 286 ~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~-~~--~-------~~~l~~ 355 (396)
+.+..+.+.+++.+++..+.+|.+++.+|||.+|++|+|+||+++|+++++++.++..+.. .. . ++.+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~ 399 (496)
T PRK15238 320 TGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTL 399 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 6777888999999999999999999999999999999999999999999999887776553 21 1 455666
Q ss_pred HHHHHHHH-------HHhhccccCCCCCccccc
Q 016061 356 FLNFFFAC-------SCYVPRFSKDIHSKWWCY 381 (396)
Q Consensus 356 ~~~~~~~~-------~~~~~~~~~~~~~~~~~p 381 (396)
+.+..+.+ +.+.+||+|+.+|||+.|
T Consensus 400 l~~~~~li~y~~~~~a~i~~r~~~~~~r~~~~~ 432 (496)
T PRK15238 400 MANVSMTLPYLFLAGAFPFFKKKKDIDRPFVVF 432 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCceec
Confidence 66643222 233345567788887763
No 35
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-38 Score=298.06 Aligned_cols=343 Identities=16% Similarity=0.220 Sum_probs=277.7
Q ss_pred ccCCCCcccchhHHHHHHhhhcc---ccc-CchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG---GPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIW 89 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G---g~f-~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~ 89 (396)
++++||++++++.++.+++.+ | |+- +....+.. +|+....++|++++.+ .++.+++++|+++++|++||.|.|
T Consensus 43 kqef~R~fs~~s~fg~sFs~~-g~~~~i~tsm~~gl~~-gG~~~~vwgwlIa~~~-~i~va~slaEl~Sa~PtsGgLy~w 119 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSLM-GLLPGIATSMAYGLGS-GGPPTLVWGWLIAGFF-SICVALSLAELCSAMPTSGGLYFW 119 (550)
T ss_pred chhhhhhhhHHHHHHHHHHHh-cchhhhhhheeecccc-CChHHHHHHHHHHHHH-HHHHHhHHHHHHhhCCCCCcHHHH
Confidence 689999999999999999866 3 221 22223333 6776778999999998 999999999999999999999999
Q ss_pred hhhhh----CChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhh-----hhhhHHHHHHHHHHHHHHHHHhhhhHH
Q 016061 90 ISSAF----GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-----LLIARIPALLGITGALTYLNYRGLHIV 160 (396)
Q Consensus 90 ~~~~~----g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (396)
+...- ||..+|++||...+++....++...+.++.++......+ ++.+.+.+..++..+...+|+...|..
T Consensus 120 aa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l 199 (550)
T KOG1289|consen 120 AAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVL 199 (550)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHH
Confidence 99884 556788999999999999999999999998877655443 235677778888899999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccCC---C-----cccc----ccccCChHHHH--HHHHHhhchhhhhhhhhcccc
Q 016061 161 GFSAVSLLVFSLCPFVVMGILSIPRIKPR---R-----WLVV----DFKKVDWRGYF--NSMFWNLNYWDKASTLAGEVE 226 (396)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---~-----~~~~----~~~~~~~~~~~--~~~~~~~~G~e~~~~~~~E~k 226 (396)
.+++++.....+..++...+......+.. | +..+ ++++.||.-.+ ....|.++|+|+++|++||+|
T Consensus 200 ~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~ 279 (550)
T KOG1289|consen 200 ARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETK 279 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhc
Confidence 99999999999988777666555432221 1 1111 11223444333 345899999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---cc-ccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHh
Q 016061 227 NPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS---SE-WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEM 302 (396)
Q Consensus 227 ~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 302 (396)
||+|+.||+|+.++.+..+.-....+.+.++.++|. .. ....|+.++..+..|+.....+....++..+.+..+.+
T Consensus 280 nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~ 359 (550)
T KOG1289|consen 280 NASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSL 359 (550)
T ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999654 22 33589999999988887777788888889999999999
Q ss_pred hhhhHHHHHHhhcCCCh--hHHhhcCCC-CCChHHHHHHHHHHHHHhh------hcHHHHHHHHHH
Q 016061 303 SGDAFQLLGMSEMGMLP--AIFASRSKY-GTPTLSILCSATGVIFLSW------MSFQEILEFLNF 359 (396)
Q Consensus 303 ~~~sR~l~~~a~dg~lP--~~~~~~~~~-~~P~~ai~~~~~i~~~~~~------~~~~~l~~~~~~ 359 (396)
.+.||..|+.+|||.+| ++++++||+ ++|.+|+++..++++++.+ ..++.+.+....
T Consensus 360 ~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i 425 (550)
T KOG1289|consen 360 TASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAI 425 (550)
T ss_pred HHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999 889999984 9999999999999988773 235555555543
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=1e-39 Score=323.63 Aligned_cols=318 Identities=25% Similarity=0.349 Sum_probs=257.1
Q ss_pred HHHHHhhhcc-cccCc-hhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHH
Q 016061 27 IALIFYEVSG-GPFGV-EDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGF 104 (396)
Q Consensus 27 ~~l~~~~~~G-g~f~~-~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~ 104 (396)
.++++++++| |.|.. +..+.+ +|+...++++++++++ .+..+.+++|+++++|++||.|.|++|.+||..|+..||
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~-~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGII-VLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHH-HHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 3457788888 77644 444555 7775557999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhHHHHHHHHHHHHh--chhhhhhhhH-HHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 016061 105 WKWLSGVLDNALYPVLFLDYLKHS--LPIFNLLIAR-IPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIL 181 (396)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 181 (396)
.+++++....+......+.+++.+ ++.....+.+ .+...++.++...+|++|+|..++++.++..++++.++.+++.
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~ 160 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIV 160 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhh
Confidence 999999999999888888777766 4422211111 1235677788899999999999999999999999888877776
Q ss_pred H-hc-cc--cCCCc-------------ccc--ccccCChHHHH---HHHHHhhchhhhhhhhhccccCCCcchHHHHHHH
Q 016061 182 S-IP-RI--KPRRW-------------LVV--DFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (396)
Q Consensus 182 ~-~~-~~--~~~~~-------------~~~--~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~ 239 (396)
+ +. .. ++.+. .+. +.+..++.+++ ...+++|.|+|+.+.++||+|||||++||++..+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~ 240 (478)
T PF00324_consen 161 GVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLS 240 (478)
T ss_pred cccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhh
Confidence 6 21 11 11111 000 00111244443 5678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccccc-----cHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhh
Q 016061 240 VVLVVSSYLIPLLAGTGGLTSLSSEWSD-----GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSE 314 (396)
Q Consensus 240 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~ 314 (396)
+..++++|++..++.....|+++....+ +|+.+..+..++++...++.+..+.+++++.++.++..+|++++|+|
T Consensus 241 ~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~ 320 (478)
T PF00324_consen 241 VLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMAR 320 (478)
T ss_pred hhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhh
Confidence 9999999999999999999987743222 58999999999999999999999999999999999999999999999
Q ss_pred cCCCh-hHHhhcCCCCCChHHHHHHHHHHHHHh
Q 016061 315 MGMLP-AIFASRSKYGTPTLSILCSATGVIFLS 346 (396)
Q Consensus 315 dg~lP-~~~~~~~~~~~P~~ai~~~~~i~~~~~ 346 (396)
||.+| +.+++.+|+++|++++++..+++.+..
T Consensus 321 dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~ 353 (478)
T PF00324_consen 321 DGLLPKKFFARHPKNGVPYVAILVSSIISLLVL 353 (478)
T ss_pred hhhhhhhhhhhhhcCCceEEEEeeehhchheee
Confidence 99999 555555589999999999988887766
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=1.8e-28 Score=236.42 Aligned_cols=308 Identities=12% Similarity=0.048 Sum_probs=235.1
Q ss_pred HHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHHH
Q 016061 27 IALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFW 105 (396)
Q Consensus 27 ~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~ 105 (396)
.++.+++++| |++.+|...+..+++ ..++..+++++. +...+++++|+++++|++||.|+|.++.+||..|++.+|.
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~-~~~~~~i~~~~~-~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~ 80 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFI-WTLLLLILLWFL-MLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLS 80 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHH-HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHH
Confidence 3457788999 999999988763333 334566777776 8889999999999999999999999999999999999999
Q ss_pred HHHHHhhhHhHHHHHHHHHHHHhchhh-hhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhc
Q 016061 106 KWLSGVLDNALYPVLFLDYLKHSLPIF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIP 184 (396)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~ 184 (396)
+++.+.....++....++++..+++.. ..+.+.....+++.++...++.+|.|..+|++.+.+..++..++++.+.++.
T Consensus 81 ~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~ 160 (381)
T TIGR00837 81 LLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLP 160 (381)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888888888788887776632 2234555566777788889999999999999999999999888888777777
Q ss_pred cccCCCccccccccCChHH---HHHHHHHhhchhh-hhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016061 185 RIKPRRWLVVDFKKVDWRG---YFNSMFWNLNYWD-KASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTS 260 (396)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~e-~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~ 260 (396)
+.+.+++.|...++.++.. .+...+++| |+| ......+|.||++|++||+++.+..+..++|++...+..+..|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~ 239 (381)
T TIGR00837 161 HVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPR 239 (381)
T ss_pred hccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 7666666554221223433 334566677 665 68888999987799999999999999999999999999999998
Q ss_pred CCccc------cccHHHHHHHH-hchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCCCChH
Q 016061 261 LSSEW------SDGYFAEVGML-IGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTL 333 (396)
Q Consensus 261 ~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~P~~ 333 (396)
|++.+ ...++.+..+. .++++...++.+....++.+|.++...+..+. +++.+++.|+++.|..
T Consensus 240 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~~~~~~~~~~~ 310 (381)
T TIGR00837 240 SEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFKFDDSKKGRFK 310 (381)
T ss_pred HHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCCcccCCCch
Confidence 88542 12455555655 45567888888888899999998888766633 4445555443333566
Q ss_pred HHHHHHHHHHHHh
Q 016061 334 SILCSATGVIFLS 346 (396)
Q Consensus 334 ai~~~~~i~~~~~ 346 (396)
+.++..+..+++.
T Consensus 311 ~~~~~~~~pl~~a 323 (381)
T TIGR00837 311 TGLLTFLPPLVFA 323 (381)
T ss_pred hhhhhHHhHHHHH
Confidence 6666666665555
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.94 E-value=1.2e-23 Score=201.19 Aligned_cols=282 Identities=17% Similarity=0.107 Sum_probs=224.7
Q ss_pred CcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCCh
Q 016061 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPF 97 (396)
Q Consensus 19 r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~ 97 (396)
+|+|.+|.+++.++.++| |++..|....+.+|+.. +++++++++. .++.++++.|+++++|+. +.++|.++.+||.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~-wi~~ll~~~~-~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDG-WISIILGGLI-IIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCe-eHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence 468999999999999999 89999998877677654 4889999998 999999999999999987 6999999999999
Q ss_pred hHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHH-HH
Q 016061 98 WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP-FV 176 (396)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~-~~ 176 (396)
.|++.+|.++.+.....+......+++++.... ++.|.+...+.+++.+.+.+.+|.|..+|++.+.....+.. ++
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~ 154 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKTYLL---PRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFIL 154 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888888888888876532 24566777778888888999999999999999999888766 34
Q ss_pred HHHHHHhccccCCCccccccccCChHHHH----HHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 016061 177 VMGILSIPRIKPRRWLVVDFKKVDWRGYF----NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLL 252 (396)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~ 252 (396)
++........|.+|..|.. +.++.+.+ ....++|.|+|......+|.||| |+.||++..+..+++++|.+...
T Consensus 155 il~~~~~~~~~~~~l~P~~--~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~ 231 (359)
T TIGR00912 155 VLILLAPKLGNIKNLLPVL--ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTF 231 (359)
T ss_pred HHHHHhcccccHHHccCcc--ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566666654 34454433 25678999999999999999996 67899999999999999999999
Q ss_pred HHHhccCCCCccccccHHHHHHHHhchh-HHH---HHHHHHHHHHhHHHHHHHhhhhhHHH
Q 016061 253 AGTGGLTSLSSEWSDGYFAEVGMLIGGF-WLK---WWIQAASAMSNLGLFEAEMSGDAFQL 309 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~s~~~~~~~~sR~l 309 (396)
+....+++++.+....|..+..+....+ ... .++...-..+.+.....++....+.+
T Consensus 232 ~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~ 292 (359)
T TIGR00912 232 VSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGL 292 (359)
T ss_pred HHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888889999998887654 333 33333333445555555565555554
No 39
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.90 E-value=1.8e-20 Score=176.99 Aligned_cols=337 Identities=12% Similarity=0.043 Sum_probs=245.0
Q ss_pred Hhhhcc-cccCchhHhhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHHHHH
Q 016061 31 FYEVSG-GPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKW 107 (396)
Q Consensus 31 ~~~~~G-g~f~~~~~~~~~~G~~--~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~~~ 107 (396)
++.-.| |-+..|+.+.+.+|.. ..+++|+++++. ....+++ +.|++||.|++.++..||+.|++.+|..+
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~-lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVG-LPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHH-HHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHH
Confidence 344457 7777888886656543 456789988886 5544554 78889999999999999999999999988
Q ss_pred HHHhhhH-----hHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 016061 108 LSGVLDN-----ALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILS 182 (396)
Q Consensus 108 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~ 182 (396)
+..-... +..+...+ ++.++|....+....+..+++..+..++++++.|...+++++++..+++.++.+++.+
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g 155 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKA 155 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6654332 22222222 4445553111234455677777888889999999999999999999999999999888
Q ss_pred hccccCCCccccc-ccc-CChHHHHHHHHHhhc-------hhhhhhhhhc-cccCCCcchHHHHHHHH-HHHHHHHHHHH
Q 016061 183 IPRIKPRRWLVVD-FKK-VDWRGYFNSMFWNLN-------YWDKASTLAG-EVENPSKTFPKALLGAV-VLVVSSYLIPL 251 (396)
Q Consensus 183 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~p~k~~p~ai~~~~-~~~~~~y~~~~ 251 (396)
+.++..+...+.. ..+ ..+...+....+.++ |+-....+.+ |.|||+|+.|+.+..+. ..+.+.|+-..
T Consensus 156 ~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~ 235 (378)
T TIGR00796 156 LLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLS 235 (378)
T ss_pred HHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764332211111 111 224444455566677 8888888888 99999999999999998 77777777777
Q ss_pred HHHHhccCCCCcc---ccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCC
Q 016061 252 LAGTGGLTSLSSE---WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKY 328 (396)
Q Consensus 252 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~ 328 (396)
.......+.++.+ ++...+.++.++..|+....++.+.+.++|+++.++...++++ +|++.++
T Consensus 236 L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~-------------~f~~~~~- 301 (378)
T TIGR00796 236 LFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE-------------YFHKLVP- 301 (378)
T ss_pred HHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcC-
Confidence 7777777655433 3667888999999999999999999999999999999887554 4667654
Q ss_pred CCChHHHHHHHHHH-HHHhhhcHHHHHHHHHH----HHHHH----H--hhccccCCCCCcccccccchhhhhc
Q 016061 329 GTPTLSILCSATGV-IFLSWMSFQEILEFLNF----FFACS----C--YVPRFSKDIHSKWWCYYCGVLIISC 390 (396)
Q Consensus 329 ~~P~~ai~~~~~i~-~~~~~~~~~~l~~~~~~----~~~~~----~--~~~~~~~~~~~~~~~p~~~~~~~~~ 390 (396)
+.|+++.+....+. ..+...++|+++++... .|-+. . ++||+.|+.+|+||.|.....+++.
T Consensus 302 k~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~~~~~~~~~ 374 (378)
T TIGR00796 302 KLSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITLIVALLFSI 374 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHHHHHHHHHH
Confidence 38988877666655 44447889999998774 23211 2 3577788889999999887777654
No 40
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.87 E-value=7.6e-19 Score=168.55 Aligned_cols=291 Identities=16% Similarity=0.101 Sum_probs=235.5
Q ss_pred CcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCCh
Q 016061 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPF 97 (396)
Q Consensus 19 r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~ 97 (396)
|+-+.++..++..|+.+| |++++|..... .|.....+..+++... ....++.++|.+.+.|+..+.-+.+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~-~Gf~~~~~~l~~~w~~-~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG-AGFLPSLILLLIAWPL-MYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh-CchHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 345778899999999999 99999999888 8887776777777776 88899999999999999889999999999999
Q ss_pred hHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhh-hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 016061 98 WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFV 176 (396)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~ 176 (396)
.+++.+..+.+.......++....++.+.++++... .+.+......++..+...+...|.|...|+++.+...+++.++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~ 158 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFI 158 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888999999999988887543 2344555666777777778889999999999999999999988
Q ss_pred HHHHHHhccccCCCccccccccCChHH---HHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 016061 177 VMGILSIPRIKPRRWLVVDFKKVDWRG---YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (396)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~ 253 (396)
.+++..+++.+.++.......+.+|.. .++..+++|.-....+.+.+..++-+|+++|+++.+..+..++|++...+
T Consensus 159 ~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~ 238 (394)
T PF03222_consen 159 ILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFS 238 (394)
T ss_pred HHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777665553222344444 44678899999999999999998778999999999999999999999999
Q ss_pred HHhccCCCCcc---ccc---cHHHHHH-HHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHH
Q 016061 254 GTGGLTSLSSE---WSD---GYFAEVG-MLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLG 311 (396)
Q Consensus 254 ~~~~~~~~~~~---~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~ 311 (396)
+.+.+|.|+.. +.+ .++.... +...+++...+..++..++..+|..+...+....+.+
T Consensus 239 ~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 239 ILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred HHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99989887632 112 2333333 3455677888888888888898888887776666543
No 41
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.7e-20 Score=181.38 Aligned_cols=362 Identities=17% Similarity=0.163 Sum_probs=263.2
Q ss_pred cCCCCcccchhHHHH-HHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCchhhhhh
Q 016061 15 AKTSPKLTVLPLIAL-IFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP-ENGGYVIWIS 91 (396)
Q Consensus 15 ~~~~r~l~~~~~~~l-~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p-~~Gg~y~~~~ 91 (396)
+..+-+++++-.+.+ .+.++.| -.|.-...+...+|....+.-.+++..+ .+.++.+++.+++.-- .+||.|..++
T Consensus 108 ~~~a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~c-TmLTaISmSAIATNGVVpaGGsYfmIS 186 (1075)
T KOG2082|consen 108 PAKAARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLC-TMLTAISMSAIATNGVVPAGGSYFMIS 186 (1075)
T ss_pred CCCccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcccCCCeeEEEe
Confidence 334566787777777 7888888 4454445555557776666666777777 7778888888888643 3789999999
Q ss_pred hhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-hchhhh---------------hhhhHHHHHHHHHHHHHHHHHh
Q 016061 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKH-SLPIFN---------------LLIARIPALLGITGALTYLNYR 155 (396)
Q Consensus 92 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ 155 (396)
|.+||.+|-.+|.+++++.....+.+..+..+.+.. .+|... ++.. +-+.+++++...+.+.
T Consensus 187 RsLGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlR--vYGT~~Li~m~lIVf~ 264 (1075)
T KOG2082|consen 187 RSLGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLR--VYGTVFLILMALIVFV 264 (1075)
T ss_pred cccCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhccee--hHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987765 455431 1122 2345777888888999
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHhccc-c--------------------C---------CC---------------
Q 016061 156 GLHIVGFSAVSLLVFSLCPFVVMGILSIPRI-K--------------------P---------RR--------------- 190 (396)
Q Consensus 156 g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~--------------------~---------~~--------------- 190 (396)
|+|.+.++..+.....++.++.+...++... + . .+
T Consensus 265 GVK~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~ 344 (1075)
T KOG2082|consen 265 GVKFVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNND 344 (1075)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCC
Confidence 9999999999999888877777665554210 0 0 00
Q ss_pred ------------cccc-ccc--------cCChH---------------------------------HH---HHHHHHhhc
Q 016061 191 ------------WLVV-DFK--------KVDWR---------------------------------GY---FNSMFWNLN 213 (396)
Q Consensus 191 ------------~~~~-~~~--------~~~~~---------------------------------~~---~~~~~~~~~ 213 (396)
.+.. +.+ ++-|. .+ +..-+-+.+
T Consensus 345 ~~~c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVT 424 (1075)
T KOG2082|consen 345 SATCDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVT 424 (1075)
T ss_pred CcccccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccc
Confidence 0000 000 00000 01 112244678
Q ss_pred hhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc--HHHHHHHHhchhHHHHHHHHHHH
Q 016061 214 YWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDG--YFAEVGMLIGGFWLKWWIQAASA 291 (396)
Q Consensus 214 G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 291 (396)
|.-+-++.+++.|||+|++|.+.+.+.+.+..+|+...+....+.....+..... .-..+......-+..|++.+..+
T Consensus 425 GImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsF 504 (1075)
T KOG2082|consen 425 GIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSF 504 (1075)
T ss_pred eeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHH
Confidence 9999999999999999999999999999999999998888887766333322110 00000000111235578888999
Q ss_pred HHhHHHHHHHhhhhhHHHHHHhhcCCCh--hHHhhcCCCCCChHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHh--
Q 016061 292 MSNLGLFEAEMSGDAFQLLGMSEMGMLP--AIFASRSKYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFFFACSCY-- 366 (396)
Q Consensus 292 ~~~~~s~~~~~~~~sR~l~~~a~dg~lP--~~~~~~~~~~~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~~~~~~~~~-- 366 (396)
++++++...++.+++|++++.|||+++| +.|+|.++++.|.+|.++..+++-..+ +.+.+.+....+++|.+++.
T Consensus 505 lST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fV 584 (1075)
T KOG2082|consen 505 LSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFV 584 (1075)
T ss_pred HHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 899999999999999999999998877 67899999998887766632
Q ss_pred -------hccccCCCCCccc
Q 016061 367 -------VPRFSKDIHSKWW 379 (396)
Q Consensus 367 -------~~~~~~~~~~~~~ 379 (396)
-.-|.|+++++||
T Consensus 585 NLaCavqtLLrtPnWRPRfk 604 (1075)
T KOG2082|consen 585 NLACAVQTLLRTPNWRPRFK 604 (1075)
T ss_pred hHHHHHHHHhcCCCCCccch
Confidence 1345677776666
No 42
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=3e-19 Score=171.00 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=212.1
Q ss_pred hHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHH----HHHHHhhccCCC-CCchhhhhhhhhCChh
Q 016061 25 PLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEA----LITAELATSFPE-NGGYVIWISSAFGPFW 98 (396)
Q Consensus 25 ~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a----~~~~el~~~~p~-~Gg~y~~~~~~~g~~~ 98 (396)
..+...++.++| |++.+|....+ .|. ++++++.++ +.+.. ..+.|.....|+ +.+.++++++.+||..
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~-~G~----i~~li~~l~-~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~ 80 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGL-GGL----WVLVLMAII-AYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNW 80 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-CHH----HHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHH
Confidence 355678888899 99999987554 554 444444443 44444 445554333343 5689999999999999
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhh--hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 016061 99 GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN--LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFV 176 (396)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~ 176 (396)
|.+.++.|++.......+++...++.+.+++.... +..++....++++++...++..|.|...|++.++...+++.++
T Consensus 81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~ 160 (397)
T TIGR00814 81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILV 160 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888777777766655321 1224445667777777899999999999999999999998888
Q ss_pred HHHHHHhccccCCCccccccccCC---hHHHHHHHHHhhchhhhhhhhh----ccccCC---CcchHHHHHHHHHHHHHH
Q 016061 177 VMGILSIPRIKPRRWLVVDFKKVD---WRGYFNSMFWNLNYWDKASTLA----GEVENP---SKTFPKALLGAVVLVVSS 246 (396)
Q Consensus 177 ~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G~e~~~~~~----~E~k~p---~k~~p~ai~~~~~~~~~~ 246 (396)
.+.+..+++.|.++.......... ....++..+|+|.|+|..+.++ +|.+|| +|+..|++..+..+..++
T Consensus 161 ~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~ 240 (397)
T TIGR00814 161 LLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVAT 240 (397)
T ss_pred HHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 888888887777766432111112 2334467899999999999998 666655 588899999999999999
Q ss_pred HHHHHHHHHhccCCCCcc----ccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhh
Q 016061 247 YLIPLLAGTGGLTSLSSE----WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSE 314 (396)
Q Consensus 247 y~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~ 314 (396)
|++..+++.+..++|+.. +..+.+..+.+....++...+..++..++..+|..+...+....+..+-+
T Consensus 241 y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 241 VMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999988742 22234666777778888888888887788888887777776666666553
No 43
>PHA02764 hypothetical protein; Provisional
Probab=99.85 E-value=2.1e-19 Score=158.83 Aligned_cols=275 Identities=16% Similarity=0.140 Sum_probs=178.1
Q ss_pred ccccCCCCcccchhHHHHHHhhhcccc-cCchhHhhh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhh
Q 016061 12 QKAAKTSPKLTVLPLIALIFYEVSGGP-FGVEDSVKA-GGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIW 89 (396)
Q Consensus 12 ~~~~~~~r~l~~~~~~~l~~~~~~Gg~-f~~~~~~~~-~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~ 89 (396)
++.+.+.|+.|.+|.+...++.+.+|. ...+..... ..|.. .+.+|++++++ +++.+++|+|+++++|++||.|.|
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~n-lLLAWLLGGLl-ALPgAL~YAELGSAmPrAGGdYVY 82 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVN-LLFAILIGAVF-EIPLLLMYYKLTTKFPLNGGDYAY 82 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchh-HHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCceEEE
Confidence 446779999999999999999885443 232333322 23443 56999999998 999999999999999999999999
Q ss_pred hhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHH-HH-HHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Q 016061 90 ISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFL-DY-LKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (396)
Q Consensus 90 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (396)
.+|++||..|++.||..|..+....++.+-... +. ++..+. ....- .-......+...|.|...|...+.
T Consensus 83 ISRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~~~~~-------~f~~~-~s~~~i~~~i~~~~~~~~~~v~il 154 (399)
T PHA02764 83 IRTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQNQFE-------QFLIV-ESLFPIVLLIIANKKIYAKIVDIL 154 (399)
T ss_pred hHHhhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeHHHHH-------HHHHH-HHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999999999999998887666543221 11 111111 11111 111112222334677777776664
Q ss_pred HHHHHHHHHHHHHHHhccccCCCccc--cccccCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHH
Q 016061 168 LVFSLCPFVVMGILSIPRIKPRRWLV--VDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVS 245 (396)
Q Consensus 168 ~~~~i~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~ 245 (396)
.....+ +..+...+..|+.. ++. ++.....+....-.|.=.|+..++++|.||-+|....+-+.+...+.+
T Consensus 155 ~~a~~i------~aif~~~~s~n~~~~~f~~-snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~ 227 (399)
T PHA02764 155 AIAQII------IAIFIAFKSFNFQYQNFTI-SNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAI 227 (399)
T ss_pred HHHHHH------HHHHhhccceeEEEcceee-hHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHH
Confidence 433332 11121222223221 111 112222333345567778999999999999999998888888777766
Q ss_pred HHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhc
Q 016061 246 SYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASR 325 (396)
Q Consensus 246 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~ 325 (396)
+-+..++. + +. +....+....++-+....--.||+.++|+-|+.+|++|+|+
T Consensus 228 ~~ii~sy~--------------n-~~-------------il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~ 279 (399)
T PHA02764 228 LSIIDSYS--------------N-LN-------------ILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKI 279 (399)
T ss_pred HHHHHhhh--------------h-HH-------------HHHHHHHHHHHhheeeecchHHHHHHHHHhhhhchHHHhcc
Confidence 55444311 0 00 11111333445555556667899999999999999999999
Q ss_pred CCCCCCh
Q 016061 326 SKYGTPT 332 (396)
Q Consensus 326 ~~~~~P~ 332 (396)
|| ++|.
T Consensus 280 ~~-nv~~ 285 (399)
T PHA02764 280 NP-NVLL 285 (399)
T ss_pred CC-Ccee
Confidence 76 6676
No 44
>PRK10483 tryptophan permease; Provisional
Probab=99.84 E-value=4.4e-18 Score=161.94 Aligned_cols=295 Identities=14% Similarity=0.095 Sum_probs=230.7
Q ss_pred CCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhh
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~ 94 (396)
.+|++.+.++..++..|+.+| |++++|...+. .|..+.....+++.+. +...++.+.|.+.++|..-+.-+.+++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~-~GF~~s~~~l~~~W~~-M~~taLlllEv~l~~~~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG-AWFFWSMAALIFTWFC-MLHSGLMILEANLNYRIGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCHHHHHHHHc
Confidence 457788999999999999999 99999998888 8887777777777777 88899999999999998888999999999
Q ss_pred CChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHH
Q 016061 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (396)
Q Consensus 95 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~ 174 (396)
||....+.+..+.+-......++....++.+++.++..+.+.+.....+++..+...+.+.|.|...|+++++...+++.
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i~~ 163 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKVIT 163 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99988777777777666777788888899888887653334567778888889999999999999999999999999988
Q ss_pred HHHHHHHHhccccCCCcccccc-ccCCh---HHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHH
Q 016061 175 FVVMGILSIPRIKPRRWLVVDF-KKVDW---RGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIP 250 (396)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~ 250 (396)
.+.++...+.+.+.++..+... .+..| ...++..+++|.-....+.+.++.++-+|++.|+++.+..+..++|++.
T Consensus 164 f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W 243 (414)
T PRK10483 164 FFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIW 243 (414)
T ss_pred HHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666554433221 11122 2445777889998899999998887656799999999999999999999
Q ss_pred HHHHHhccCCCCcc----ccc--cH-HHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Q 016061 251 LLAGTGGLTSLSSE----WSD--GY-FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM 312 (396)
Q Consensus 251 ~~~~~~~~~~~~~~----~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~ 312 (396)
..++.+..|+|+.. +.+ +. ...+.+....++...+..++..++..+|..+...+....+.++
T Consensus 244 ~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~ 312 (414)
T PRK10483 244 LLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL 312 (414)
T ss_pred HHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999977632 222 12 2344445556677777888888888888776666655555443
No 45
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.82 E-value=2.2e-17 Score=157.01 Aligned_cols=288 Identities=10% Similarity=0.016 Sum_probs=220.0
Q ss_pred cchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHH
Q 016061 22 TVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGF 100 (396)
Q Consensus 22 ~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 100 (396)
+.+...++..|+.+| |++++|...+. .|..+..+..+++.+. +...++.+.|.+.++|..-+.-+.+++.+||....
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~-~Gf~~s~~ll~~~w~~-M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG-AWFFWGAFILIIAWFS-MLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 777899999999999 99999998888 8887777777777776 88899999999999998888999999999998777
Q ss_pred HHHHHHHHHHhhhHhHHHHHHHHHHHHhchh-hhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH
Q 016061 101 QEGFWKWLSGVLDNALYPVLFLDYLKHSLPI-FNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 179 (396)
+.+..+.+-......++....++.+++.++. .+.+.+....++++.++...+.+.|.|...|+++++...+++..+..+
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~~~~ 167 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVF 167 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666677788888888888888764 222344555668888889999999999999999999988888877767
Q ss_pred HHHhccccCCCcccccccc--CC----hHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 016061 180 ILSIPRIKPRRWLVVDFKK--VD----WRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (396)
Q Consensus 180 i~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~ 253 (396)
....++.+.++..+..... .. ....++..+.+|.=....+.+....++-+|+++|+++.+..+..++|++...+
T Consensus 168 ~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ 247 (415)
T PRK09664 168 GSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYC 247 (415)
T ss_pred HHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7667776665554322111 11 22345677888888888888888887666899999999999999999999999
Q ss_pred HHhccCCCCcc---ccccHHH----HHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHH
Q 016061 254 GTGGLTSLSSE---WSDGYFA----EVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLG 311 (396)
Q Consensus 254 ~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~ 311 (396)
+...+|+|+.. ....... ...+...+++...+..++..++..+|..+...+....+.+
T Consensus 248 ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D 312 (415)
T PRK09664 248 TMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLAD 312 (415)
T ss_pred HhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877632 1112222 3333445567777777777777777776655554444433
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.82 E-value=3.2e-17 Score=156.65 Aligned_cols=290 Identities=14% Similarity=0.103 Sum_probs=226.1
Q ss_pred cchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHH
Q 016061 22 TVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGF 100 (396)
Q Consensus 22 ~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 100 (396)
+.+...++..|+.+| |++++|-.... +|.....+..+++... ....++.+.|.+.+.|..-+.-+.+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~-~Gf~~~~~~li~~w~~-m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG-VGFSVTLILLIGLWAL-MCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh-ChHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 567788999999999 99999999888 8887666666666665 77788889999999887778999999999999999
Q ss_pred HHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh-hhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH
Q 016061 101 QEGFWKWLSGVLDNALYPVLFLDYLKHSLPIF-NLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 179 (396)
+....+.+.......++....++.+.+.++.. +.+.+.....+.+.++...+.+.|.|...|+++++...+++.++.+.
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~ 161 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVML 161 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888777766655431 11223344555666666668888999999999999999998877777
Q ss_pred HHHhccccCCCccccccccCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 016061 180 ILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLT 259 (396)
Q Consensus 180 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~ 259 (396)
...+++.+.+++.....++......++..+++|.-....+.+....++.+|+++|++..+..+..++|++...++.+..|
T Consensus 162 ~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~ 241 (403)
T PRK15132 162 ALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSID 241 (403)
T ss_pred HHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777766666543211111234555778899999999999999988878999999999999999999999999999999
Q ss_pred CCCcc----cc---ccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHh
Q 016061 260 SLSSE----WS---DGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMS 313 (396)
Q Consensus 260 ~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a 313 (396)
+|+.. +. ++.+..+.+....++...+..++..++..+|..+...+....+.++-
T Consensus 242 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 242 STTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87632 11 13455666667778888888888888888888877777666665543
No 47
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.80 E-value=2e-16 Score=152.87 Aligned_cols=286 Identities=15% Similarity=0.079 Sum_probs=229.6
Q ss_pred CCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhhhhhhh
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWISSA 93 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~G-g~y~~~~~~ 93 (396)
+.+++-+.++.+....+..+| |++.+|..... +|....+...++.+.+ +....+.+.|...+.|+.. +.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~-~G~~~~l~~l~i~~~~-t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGG-GGFWPGLLLLIIAWPL-TYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcC-CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 456667888999999999999 99999999988 8887777788888887 8889999999999999984 999999999
Q ss_pred hCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh-hhh-hhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 016061 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIF-NLL-IARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 94 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (396)
+||.++++.+..+.+.......++....++.+...++.. +.+ ..+.+..+++......+.+.|.+...|.+..+...+
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888753 222 566666777777778899999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCccccc----cccCChHHHHHHHHHhhchhhhhhhhhccccCCCcc-hHHHHHHHHHHHHHH
Q 016061 172 LCPFVVMGILSIPRIKPRRWLVVD----FKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKT-FPKALLGAVVLVVSS 246 (396)
Q Consensus 172 i~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~-~p~ai~~~~~~~~~~ 246 (396)
++.++++....+++.++.+..... .....+...++..+++|.+......+..|+|+++++ ++|++..+..+..++
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vl 241 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVL 241 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 988888887777665554432221 112334455678899999999999999999988877 999999999999999
Q ss_pred HHHHHHHHHhccCCCCc----c---ccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhh
Q 016061 247 YLIPLLAGTGGLTSLSS----E---WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMS 303 (396)
Q Consensus 247 y~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 303 (396)
|+...+....+++.++. + +..+......+....+.......+..+.+..+|..+...
T Consensus 242 yi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~l 305 (415)
T COG0814 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYL 305 (415)
T ss_pred HHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchh
Confidence 99999999999987641 1 122233344444555667777777777777776544443
No 48
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.79 E-value=2.6e-18 Score=165.25 Aligned_cols=340 Identities=17% Similarity=0.121 Sum_probs=233.7
Q ss_pred CCcccchhHHHHHHh-hhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhhhhhhhh
Q 016061 18 SPKLTVLPLIALIFY-EVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPE-NGGYVIWISSAF 94 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~-~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~-~Gg~y~~~~~~~ 94 (396)
+.|+++++.++.=.. ++.. -.|.--+.+...+|..-.+.-.+++-.+ .+.+.++...+++.--. .||.|.-++|.+
T Consensus 64 r~kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I-~llTvlSicAIsTNGaV~GGGaYymISRsL 142 (945)
T KOG1288|consen 64 RAKLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAI-LLLTVLSICAISTNGAVRGGGAYYMISRSL 142 (945)
T ss_pred cccccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHH-HHHHHHHHhhhccCCceecCceEEEEEccc
Confidence 338998887765222 2322 1222222332226654444444444444 55667788888876544 689999999999
Q ss_pred CChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhh-----------hhhhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 016061 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-----------LLIARIPALLGITGALTYLNYRGLHIVGFS 163 (396)
Q Consensus 95 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 163 (396)
||.+|--.|..+.++.++..+.++.+..+-+.+.++... +.++..+-+.++...+..+.+.|-...+|-
T Consensus 143 GpEfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAka 222 (945)
T KOG1288|consen 143 GPEFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKA 222 (945)
T ss_pred CcccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 999999999999999999999999999998877665221 245666666777788888899999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCc------------------ccccc------------------ccCChHHHHHH
Q 016061 164 AVSLLVFSLCPFVVMGILSIPRIKPRRW------------------LVVDF------------------KKVDWRGYFNS 207 (396)
Q Consensus 164 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~------------------~~~~~------------------~~~~~~~~~~~ 207 (396)
..+..+...+-+..+.+-.++.....+. +...+ ..-++...+..
T Consensus 223 s~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV 302 (945)
T KOG1288|consen 223 SNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGV 302 (945)
T ss_pred hhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhhee
Confidence 8776665554444333322221111110 00000 00112333344
Q ss_pred HHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHH
Q 016061 208 MFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQ 287 (396)
Q Consensus 208 ~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (396)
.+-..+|.-+-+++++|.|+|.|.+||+.+.++..+.++|+++.+.+..-.|...+.+... +++. .....+++.
T Consensus 303 ~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~----v~~~--isl~p~fi~ 376 (945)
T KOG1288|consen 303 FFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD----VMMH--ISLHPPFIL 376 (945)
T ss_pred eeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchh----heee--ccccchHHH
Confidence 4556789999999999999999999999999999999999999998877666533322111 1111 122344555
Q ss_pred HHHHHHhHHHHHHHhhhhhHHHHHHhhcCCCh--hHHhhcC-CCCCChHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHH
Q 016061 288 AASAMSNLGLFEAEMSGDAFQLLGMSEMGMLP--AIFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLNFFFAC 363 (396)
Q Consensus 288 ~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP--~~~~~~~-~~~~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~~~~~~ 363 (396)
+.+.-..+.+.+..+.+.+|++.++|||.++| ..|++.. ..+.|+.++.+.-.+.-+.. ..++|.+..+.+.+|++
T Consensus 377 iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLl 456 (945)
T KOG1288|consen 377 IGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLL 456 (945)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666667777888999999999999999999 5566766 47899999999988877766 55999999999877766
Q ss_pred H
Q 016061 364 S 364 (396)
Q Consensus 364 ~ 364 (396)
.
T Consensus 457 t 457 (945)
T KOG1288|consen 457 T 457 (945)
T ss_pred H
Confidence 5
No 49
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.78 E-value=1.7e-16 Score=151.01 Aligned_cols=286 Identities=14% Similarity=0.053 Sum_probs=217.3
Q ss_pred HHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCchhhhhhhhhCChhHHHHHH
Q 016061 27 IALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSF-PENGGYVIWISSAFGPFWGFQEGF 104 (396)
Q Consensus 27 ~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~-p~~Gg~y~~~~~~~g~~~g~~~~~ 104 (396)
.....|..+| |++.+|-..+. +|....++..+++..+ +...++.+.|..... |.+.+.-+-+++.+||..+.+.+.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~-~Gf~p~lillll~~p~-m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGF-GGLIPILLMLVLAYPI-AFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhc-chHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHH
Confidence 3557788899 99999998888 8887776777777776 777889999999888 555678899999999999999999
Q ss_pred HHHHHHhhhHhHHHHHHHHHHHHhchhh-hh-hhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 016061 105 WKWLSGVLDNALYPVLFLDYLKHSLPIF-NL-LIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILS 182 (396)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~ 182 (396)
.|.+.......++.....+.+.+++.+. +. +.+....++++..+...+...|.|...|+++++...+++.++.+.+..
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~L 182 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSL 182 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888777777766666666543322 11 346777888999999999999999999999999999999999988888
Q ss_pred hccccCCCcccccc---ccC---C----hHHHHHHHHHhhchhhhhhhhhcc----cc------CCCcchHHHHHHHHHH
Q 016061 183 IPRIKPRRWLVVDF---KKV---D----WRGYFNSMFWNLNYWDKASTLAGE----VE------NPSKTFPKALLGAVVL 242 (396)
Q Consensus 183 ~~~~~~~~~~~~~~---~~~---~----~~~~~~~~~~~~~G~e~~~~~~~E----~k------~p~k~~p~ai~~~~~~ 242 (396)
+++.+.+++..... ++. + ....++..+++|.=....+.++.. .+ +.+|+..|++..+..+
T Consensus 183 iP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i 262 (443)
T PRK13629 183 IPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASML 262 (443)
T ss_pred HHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 88877766543221 011 1 222336677777766666655544 32 2258889999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcc---ccccH-HHHHHHHhch---------hHHHHHHHHHHHHHhHHHHHHHhhhhhHHH
Q 016061 243 VVSSYLIPLLAGTGGLTSLSSE---WSDGY-FAEVGMLIGG---------FWLKWWIQAASAMSNLGLFEAEMSGDAFQL 309 (396)
Q Consensus 243 ~~~~y~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l 309 (396)
..++|++..+++.+..++|+.. +.+.+ +.++++...+ ++...+..++..++..+|..+-..+.--.+
T Consensus 263 ~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l 342 (443)
T PRK13629 263 MVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGL 342 (443)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988842 22334 7888887776 667777778777787777777777666555
Q ss_pred HHHhh
Q 016061 310 LGMSE 314 (396)
Q Consensus 310 ~~~a~ 314 (396)
..+.+
T Consensus 343 ~gl~~ 347 (443)
T PRK13629 343 NGLIL 347 (443)
T ss_pred HHHHH
Confidence 55553
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.78 E-value=3.6e-16 Score=147.12 Aligned_cols=280 Identities=18% Similarity=0.122 Sum_probs=228.0
Q ss_pred cccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChh
Q 016061 20 KLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFW 98 (396)
Q Consensus 20 ~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~ 98 (396)
|+|.+|...+.+..+.| ++...|....+.+| ++| ++.+++++. .+...+.+..+.+++|+. +..++.++.+||++
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~W-i~~ll~~~~-~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAW-ISVLLGGLI-GLLLALLIYYLLKRFPGK-TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcH-HHHHHHHHH-HHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHH
Confidence 58999999999999999 88888888766565 333 778888887 888999999999999987 79999999999999
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-chhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 016061 99 GFQEGFWKWLSGVLDNALYPVLFLDYLKHS-LPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVV 177 (396)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 177 (396)
|.+.+..+.+.+....+......++.++.. +| ++|.+.+...+++.+.+...+|.+..+|.+.+.....+...+.
T Consensus 77 g~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp----~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~ 152 (320)
T PF03845_consen 77 GKIINLLYILYFLLISALVLREFSEFIKTYLLP----ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLL 152 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875 55 6788888888889999999999999999998888888877777
Q ss_pred HHHHHhccccCCCccccccccCChHHHH---HHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 016061 178 MGILSIPRIKPRRWLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAG 254 (396)
Q Consensus 178 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~ 254 (396)
+........|.+|..|.. +.|+.+.+ ....+.|.|.|....+.+.+||| |+..|....+..+++++|....+..
T Consensus 153 i~~~~~~~~~~~~l~P~~--~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (320)
T PF03845_consen 153 ILLLSIPNIDWDNLLPVL--ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK-KKLKKSLLIAILISGLFLLFIIFIT 229 (320)
T ss_pred HHHHhcccCCHHHeeCcc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777755 34555444 44567899999999999999997 5568999999999999999999999
Q ss_pred HhccCCCCccccccHHHHHHHHhchh-HHHH---HHHHHHHHHhHHHHHHHhhhhhHHHH
Q 016061 255 TGGLTSLSSEWSDGYFAEVGMLIGGF-WLKW---WIQAASAMSNLGLFEAEMSGDAFQLL 310 (396)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~s~~~~~~~~sR~l~ 310 (396)
...+++|+.+....|..++.+...-+ .... ++...-....+.....++...++.+.
T Consensus 230 i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~ 289 (320)
T PF03845_consen 230 IGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLS 289 (320)
T ss_pred HHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888999888877544 3333 33333334445555555555555543
No 51
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1e-15 Score=146.41 Aligned_cols=343 Identities=15% Similarity=0.063 Sum_probs=247.0
Q ss_pred ccCCCCcccchhHHHH-HHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCchhhhh
Q 016061 14 AAKTSPKLTVLPLIAL-IFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP-ENGGYVIWI 90 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l-~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p-~~Gg~y~~~ 90 (396)
..+.+-++++|+.++. ..-++.| -.|.-.+.+..++|....++-..++..+ ++.++++..-++++-. +.||.|..+
T Consensus 23 ~~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~v-t~it~lSa~~I~t~~~vk~Gg~yfli 101 (643)
T KOG2083|consen 23 LTKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVV-TLITVLSAIAIVTRGQVKSGGVYFLI 101 (643)
T ss_pred ccCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHH-HHHHHHhHheeeecceeccCcEEEEE
Confidence 3556778999999987 5566777 5565566765558876554555555555 7778888888887754 479999999
Q ss_pred hhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 016061 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (396)
Q Consensus 91 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (396)
+|.+|+..|--.|.+|.++.....+.+..++++....++..... ....-++.+.++++..++.-|.++..|.|.++..+
T Consensus 102 s~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~-~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~i 180 (643)
T KOG2083|consen 102 SRSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESK-EMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLLI 180 (643)
T ss_pred EecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH-HHhcchhHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888875532 22222567778888999999999999999999888
Q ss_pred HHHHHHHHHHHHhcccc-C-------------CCccccccccCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHH
Q 016061 171 SLCPFVVMGILSIPRIK-P-------------RRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKAL 236 (396)
Q Consensus 171 ~i~~~~~~~i~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai 236 (396)
.++.+.-..+..+...+ . +|..|.-.+...|...++..+-+.+|.-+-.+++++.|+|++++|++.
T Consensus 181 l~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~Ga 260 (643)
T KOG2083|consen 181 LLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGA 260 (643)
T ss_pred HHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccch
Confidence 88777766665554322 0 111111111223445556667788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcc----cccc----HHHHHHHHhc-hhHHHHHHHHHHHHHhHHHHHHHhhhhhH
Q 016061 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSE----WSDG----YFAEVGMLIG-GFWLKWWIQAASAMSNLGLFEAEMSGDAF 307 (396)
Q Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~sR 307 (396)
+.+......+|+....-.....-.+..+ ..+. .+.+..+..- .......+......+...+..+.+.++.+
T Consensus 261 L~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~ 340 (643)
T KOG2083|consen 261 LLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPK 340 (643)
T ss_pred hhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhH
Confidence 9999999999987766654433222211 1111 1222222211 12233445555666777778889999999
Q ss_pred HHHHHhhcCCCh--hHHhhcC-CCCCChHHHHHHHHHHHHHh-hhcHHHHHHHHH
Q 016061 308 QLLGMSEMGMLP--AIFASRS-KYGTPTLSILCSATGVIFLS-WMSFQEILEFLN 358 (396)
Q Consensus 308 ~l~~~a~dg~lP--~~~~~~~-~~~~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~ 358 (396)
+++++.+|...| .++.|-. |++.|.++..+....+..++ ....|.+..+..
T Consensus 341 V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis 395 (643)
T KOG2083|consen 341 VLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIIS 395 (643)
T ss_pred HHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchh
Confidence 999999999999 5677655 68999999999988887777 444444444444
No 52
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.55 E-value=1.5e-11 Score=110.85 Aligned_cols=308 Identities=12% Similarity=-0.003 Sum_probs=215.9
Q ss_pred HHHHHHhhhcccccCchhHhhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHH
Q 016061 26 LIALIFYEVSGGPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEG 103 (396)
Q Consensus 26 ~~~l~~~~~~Gg~f~~~~~~~~~~G~~--~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~ 103 (396)
..+..++.++|+.|...+.+.+-.|.- ..+++.++.+.+ ....+....|+++++ ++...-++.++.+||.++.+.-
T Consensus 8 ~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vl-f~~~g~vim~ig~~f-~a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 8 WAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVL-FTLSGAVIMTIGKKF-NATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHh-cccchHHHHHHHhhHHHHHHHH
Confidence 344567788998899998886633321 357899999998 667799999999999 6668889999999999999999
Q ss_pred HHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhh-hhHHHHHhHHHHHHHHHHHHHHHHHH
Q 016061 104 FWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRG-LHIVGFSAVSLLVFSLCPFVVMGILS 182 (396)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~i~~~~~~~i~~ 182 (396)
....+..+....+...+.+..+++.++ .|.|+.++++......+..++ .+..-+++.+.+.+.++.+..+....
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~~~-----lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~~~ 160 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEMFG-----LPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLSF 160 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHhC-----ccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHHHH
Confidence 988888888888888888878888887 677877777777777777777 88888888888887775533322221
Q ss_pred hccccCCCccccccccCChHHH-H-HHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016061 183 IPRIKPRRWLVVDFKKVDWRGY-F-NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTS 260 (396)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~ 260 (396)
....+.+.++.......+|... . ...+-..........+++|+|++ |+..++-+.+-++.+++..+.+.......+
T Consensus 161 ~f~~~~~~a~~~~~~~~~W~~~~~~Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~- 238 (349)
T COG3949 161 QFTNLGNAAQIVLTKQGNWKASAVGYGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALYD- 238 (349)
T ss_pred HHhhccchhhhcCCcCCChHHHHHhhhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc-
Confidence 1111111122222223344332 2 33444456667778888999995 888899999999999888888888877654
Q ss_pred CCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCCCChH-HHHHHH
Q 016061 261 LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTL-SILCSA 339 (396)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~~P~~-ai~~~~ 339 (396)
+....+-|..++++... +....++...++....++..+.+.+.+|-+ .. +.+.|.. ......
T Consensus 239 -~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~l~~r~-------------~s--~~~~~~~~i~~iil 301 (349)
T COG3949 239 -KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYGLASRL-------------TS--FFPRRYWIIAAIIL 301 (349)
T ss_pred -hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------cc--cCCchHHHHHHHHH
Confidence 56677889999998877 667777777777888888777666533322 11 2222222 233444
Q ss_pred HHHHHHhhhcHHHHHHHHHH
Q 016061 340 TGVIFLSWMSFQEILEFLNF 359 (396)
Q Consensus 340 ~i~~~~~~~~~~~l~~~~~~ 359 (396)
++........|.+|++....
T Consensus 302 vi~~~~s~~Gf~~LI~~lYp 321 (349)
T COG3949 302 VIAYPLSFFGFINLIAKLYP 321 (349)
T ss_pred HHHHHHHHhhHHHHHHHHhh
Confidence 55555567778888877653
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.53 E-value=5.5e-12 Score=119.82 Aligned_cols=289 Identities=13% Similarity=0.069 Sum_probs=194.2
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-c-ccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCC-------
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAE--LATSFPE------- 82 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g-~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~e--l~~~~p~------- 82 (396)
+++.++++|.+|++..+++..+| | +-++..++.. +||.+.+|.|+.+.+. ++..|+| |+.+|++
T Consensus 12 ~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~G----matk~~E~~La~~yR~~~~~G~~ 86 (416)
T PF01235_consen 12 KKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLG----MATKYAEVTLAQKYREKDEDGEY 86 (416)
T ss_pred CCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHH----HHHHHHHHHHHHHheEECCCCCE
Confidence 45566789999999999999999 5 6677777777 9999888888877554 4556666 5655542
Q ss_pred CCchhhhhhhhhC-ChhHHHHHHHHHHHHhhh-HhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHH
Q 016061 83 NGGYVIWISSAFG-PFWGFQEGFWKWLSGVLD-NALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIV 160 (396)
Q Consensus 83 ~Gg~y~~~~~~~g-~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (396)
.||..+|.++.+| |+++.+.+.+....+... +....-..++.+++.++ .+.+..++++..+...+...|+|..
T Consensus 87 ~GGP~yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-----i~~~~~gi~l~~l~~~vi~GGikrI 161 (416)
T PF01235_consen 87 RGGPMYYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-----IPPWITGIILAILVALVIFGGIKRI 161 (416)
T ss_pred eecHHHHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-----ccHHHHHHHHHHHHHHHHHcchhHH
Confidence 4789999999988 556666666644554443 45555555555555454 4556677788888888899999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccCCCccc---------cccc--cCChHHHHH--H-------HHHhh---chhhh
Q 016061 161 GFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLV---------VDFK--KVDWRGYFN--S-------MFWNL---NYWDK 217 (396)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~---------~~~~--~~~~~~~~~--~-------~~~~~---~G~e~ 217 (396)
+++...++.++.+.-++.++..+.. +.++.++ ++.. ..|..+... . .+|+= .|...
T Consensus 162 ~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~ 240 (416)
T PF01235_consen 162 AKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAP 240 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCCCChhH
Confidence 9999999999887666655543321 1111111 1110 011111111 0 12221 25555
Q ss_pred hhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--ccccccHHHHHHHHhchhHHHHHHHHHHHHHhH
Q 016061 218 ASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLS--SEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNL 295 (396)
Q Consensus 218 ~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (396)
..+-+.|.+||.|+--.+++-..+-+.++-.+..+++..--.++. ..+......+.++...+++..+++.+++++..+
T Consensus 241 ~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFaf 320 (416)
T PF01235_consen 241 IAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAF 320 (416)
T ss_pred HHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 566667899999888777777777677777777666655322221 112233456777777778889999999999999
Q ss_pred HHHHHHhhhhhHHHHHHh
Q 016061 296 GLFEAEMSGDAFQLLGMS 313 (396)
Q Consensus 296 ~s~~~~~~~~sR~l~~~a 313 (396)
++..++.....|.+.-+.
T Consensus 321 TTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 321 TTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999998888876654
No 54
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.47 E-value=2e-11 Score=117.55 Aligned_cols=272 Identities=17% Similarity=0.141 Sum_probs=191.8
Q ss_pred CCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc-----hhhh
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGG-----YVIW 89 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg-----~y~~ 89 (396)
..+|+.|+++..+-.++.++| |+.++|.++.+ .|....+...++.+++ .+.++....+.-+..|...| +-+-
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~-lGW~~G~~~Ll~~~ii-t~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQ-LGWISGIVILLLFAII-TLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHh-CchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 357889999999999999999 99999988888 8886656667777776 77778778888888887777 7788
Q ss_pred hhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhh-----hHHHHHHHHHHHHHHH-HHhhhhHHHHH
Q 016061 90 ISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLI-----ARIPALLGITGALTYL-NYRGLHIVGFS 163 (396)
Q Consensus 90 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 163 (396)
++++||++.-.++++...+........+....++.+...++....+. ..+.+ ++.++.... .+...+...++
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~i--if~~i~~~~s~lp~~~~l~~~ 188 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFII--IFGLIVLPLSQLPNFHSLSYL 188 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhh--hHHHHHHHHHHCCCcchhHHH
Confidence 89999988888899999998888888999999999988877552211 22222 222222222 24555666677
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCcc---ccccccCCh-HHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHH
Q 016061 164 AVSLLVFSLCPFVVMGILSIPRIKPRRWL---VVDFKKVDW-RGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGA 239 (396)
Q Consensus 164 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~ 239 (396)
.....++.+.........+....-..+.. .....+.+. ...+....|+|.|.....++...+|+|+| .+|+.+.+
T Consensus 189 S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis 267 (437)
T KOG1303|consen 189 SLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLIS 267 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHH
Confidence 76666666655555555555433111111 111111121 34556778999999999999999999977 99999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHh-chhHHHHHHHHHHHHHhHHHHH
Q 016061 240 VVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLI-GGFWLKWWIQAASAMSNLGLFE 299 (396)
Q Consensus 240 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~ 299 (396)
..++.++|+.+++..+..++++..+ ++.... .+.|.....++.+.+-.+++..
T Consensus 268 ~~~~~~~y~~vai~GY~aFG~~~~~-------~il~s~~~p~~~~~~ani~i~~h~i~s~~ 321 (437)
T KOG1303|consen 268 YIIVTFLYFPVAIIGYWAFGDSVPD-------NILLSLQPPTWLIALANILIVLHLIGSYQ 321 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhccccch-------hhhhcccCchhHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999888864322 122222 2456666666666655555543
No 55
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.44 E-value=1.7e-10 Score=110.32 Aligned_cols=283 Identities=12% Similarity=0.084 Sum_probs=182.1
Q ss_pred CCcccchhHHHHHHhhhcc-c-ccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHH--hhccCC---CC----Cch
Q 016061 18 SPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAE--LATSFP---EN----GGY 86 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~G-g-~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~e--l~~~~p---~~----Gg~ 86 (396)
++++|.+|+++..++..+| | +.+++..+.. +||.+.+|.|+.+.+. .+..++| ++.++. ++ ||.
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI~allG----m~~~~~e~~L~~~yr~~~~~g~~~GGP 118 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWVTAFIG----MATKFVESTLAQKYRERDADGVFRGGP 118 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHHHHHHH----HHHHHHHHHHHHHeeeeCCCCCEecCh
Confidence 3469999999999999999 7 8888888766 8998877777765543 2334444 444444 22 344
Q ss_pred hhhhhhhhC-ChhHHHHHHHHHHHH-hhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 016061 87 VIWISSAFG-PFWGFQEGFWKWLSG-VLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSA 164 (396)
Q Consensus 87 y~~~~~~~g-~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 164 (396)
..|.++.++ |++|.+.+.. .+.+ ...+.......++.++..++ .+.+..++++.++...+...|+|..+++.
T Consensus 119 ~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-----~~~~v~~i~l~~l~~~vi~GGik~Ia~v~ 192 (425)
T TIGR00835 119 MYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-----VPKLVTGIVLTVLTALIIFGGLKRIAKIS 192 (425)
T ss_pred HHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 467777654 8889888877 4444 44566667777777764443 45667777777777778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCcccc---------ccc--cCChHHHH--HH-------HHHhh-c--hhhhhhhh
Q 016061 165 VSLLVFSLCPFVVMGILSIPRIKPRRWLVV---------DFK--KVDWRGYF--NS-------MFWNL-N--YWDKASTL 221 (396)
Q Consensus 165 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~---------~~~--~~~~~~~~--~~-------~~~~~-~--G~e~~~~~ 221 (396)
..++.++.+..+...+..+. .+.++.+|. +.. ..|..+.. .. .+|+= . |....++-
T Consensus 193 ~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a 271 (425)
T TIGR00835 193 SVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAA 271 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHH
Confidence 99999988776554442222 122232221 100 01111110 00 12221 2 44555666
Q ss_pred hccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCC-C-ccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHH
Q 016061 222 AGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSL-S-SEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFE 299 (396)
Q Consensus 222 ~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 299 (396)
+.|++||.|+--.+++....-+.++-.+..+++..--.++ . -.+...-..+.++...+++..+++.+++++..+++..
T Consensus 272 ~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii 351 (425)
T TIGR00835 272 AAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTII 351 (425)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 7788999888877777777766666666666544432222 1 1112233445566666778889999999999999999
Q ss_pred HHhhhhhHHHHHH
Q 016061 300 AEMSGDAFQLLGM 312 (396)
Q Consensus 300 ~~~~~~sR~l~~~ 312 (396)
++.....+.+.-+
T Consensus 352 ~~~yyge~~~~yl 364 (425)
T TIGR00835 352 GWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHh
Confidence 9998877776555
No 56
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.44 E-value=7.2e-11 Score=111.04 Aligned_cols=286 Identities=13% Similarity=0.092 Sum_probs=204.1
Q ss_pred CCCCcccchhHHHHHHhhhcc-c-ccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHH--hhccCC-------CCC
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAE--LATSFP-------ENG 84 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g-~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~e--l~~~~p-------~~G 84 (396)
+.++.+|.+|+++.+.+..+| | +-++..++.. +||.+.+|.|+.+.+. ++-.|+| |+..|+ ..|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al~G----mat~f~E~~La~~Yr~kd~~G~~~G 132 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVALFG----MATKFAESTLAQKYRVKDKDGEYRG 132 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHHHH----HHHHHHHHHHHhheeEeCCCCCCcC
Confidence 578889999999999999999 5 5677677777 9999888888877664 4556666 666665 247
Q ss_pred chhhhhhhhhC-ChhHHHHHHHHHHHHh-hhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHH
Q 016061 85 GYVIWISSAFG-PFWGFQEGFWKWLSGV-LDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGF 162 (396)
Q Consensus 85 g~y~~~~~~~g-~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 162 (396)
|.-+|.++.+| |++|-+.+....+++. ..+...+-+.++.+++.++ .+.+..++++.++...+.+.|+|..++
T Consensus 133 GP~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-----~~~~~~gi~la~l~~~VI~GGi~rIa~ 207 (452)
T COG1115 133 GPAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-----IPPLVTGIVLALLVALVIFGGIKRIAK 207 (452)
T ss_pred ChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 89999999998 6788888877777777 5788888888888888887 556777888888889999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHhc-cccCCCccc----cccccCChH----HHH--------H-H---HHHhh-chhhhhh-
Q 016061 163 SAVSLLVFSLCPFVVMGILSIP-RIKPRRWLV----VDFKKVDWR----GYF--------N-S---MFWNL-NYWDKAS- 219 (396)
Q Consensus 163 ~~~~~~~~~i~~~~~~~i~~~~-~~~~~~~~~----~~~~~~~~~----~~~--------~-~---~~~~~-~G~e~~~- 219 (396)
+...++..+-+.-++..+..+. +.+ +.++ ...+.+++. ++. . . ..|+= .|..+++
T Consensus 208 v~~~vVPfMA~~Yi~~~~~Ii~~n~~--~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~ 285 (452)
T COG1115 208 VSSKVVPFMAILYVLVALVIIVLNIS--QIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPI 285 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHh--hhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchh
Confidence 9999998877655554443322 111 1111 000111111 111 0 0 13332 3555554
Q ss_pred -hhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc--ccccHHHHHHHHhchhHHHHHHHHHHHHHhHH
Q 016061 220 -TLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSE--WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLG 296 (396)
Q Consensus 220 -~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (396)
+.+.+++||.|+--..++...+-+.++.....+++...-.++..+ .........+++..+++...++.+.+.+..++
T Consensus 286 aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafT 365 (452)
T COG1115 286 AAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFT 365 (452)
T ss_pred HHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 445678899888777777777767777777777766644333322 33445667788888899999999999999999
Q ss_pred HHHHHhhhhhHHHHHHh
Q 016061 297 LFEAEMSGDAFQLLGMS 313 (396)
Q Consensus 297 s~~~~~~~~sR~l~~~a 313 (396)
+..++.....|.+.-+.
T Consensus 366 TIlg~yyyge~~~~fl~ 382 (452)
T COG1115 366 TILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999998888875554
No 57
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=99.14 E-value=2.3e-07 Score=88.96 Aligned_cols=339 Identities=14% Similarity=0.046 Sum_probs=198.9
Q ss_pred HHHhhhcc-cccCchhHhhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHHH
Q 016061 29 LIFYEVSG-GPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFW 105 (396)
Q Consensus 29 l~~~~~~G-g~f~~~~~~~~~~G~~--~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~ 105 (396)
+.++.-.| |=.-.|+.+.+.+|.. ...+++++.+.. ++. +...-.++ ..|+.++..+|. ||+.|.+....
T Consensus 11 ~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~--lP~-Lgvia~~~---~~~~~~~l~~~v-~~~f~~if~~~ 83 (427)
T PF05525_consen 11 ALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVG--LPL-LGVIAVAK---SGGGIEDLASRV-GPKFALIFTIL 83 (427)
T ss_pred HHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHH--HHH-HHHHHHhh---cCCCHHHHhccc-CcHHHHHHHHH
Confidence 34444456 5455677776656653 334556665553 221 11111221 234666666665 88888877655
Q ss_pred HHHHHh--hhHhHHHHHHHH-HHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 016061 106 KWLSGV--LDNALYPVLFLD-YLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILS 182 (396)
Q Consensus 106 ~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~ 182 (396)
..+.-- ...+=.+...-| -+..+++. ++.....+..+++..+..++.++.-|...++-++++...++.++++++.+
T Consensus 84 i~l~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~ 162 (427)
T PF05525_consen 84 IYLSIGPLFAIPRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKG 162 (427)
T ss_pred HHHHHHhcccCcchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444322 111111111111 23334443 33466677788888999999999999999999999999999888888888
Q ss_pred hccccCCCccccc-cccCChH-HHH-------HHHHHhhchhhhhhhhhccccC---CCcchHHHHHHHHHHHHHHHHHH
Q 016061 183 IPRIKPRRWLVVD-FKKVDWR-GYF-------NSMFWNLNYWDKASTLAGEVEN---PSKTFPKALLGAVVLVVSSYLIP 250 (396)
Q Consensus 183 ~~~~~~~~~~~~~-~~~~~~~-~~~-------~~~~~~~~G~e~~~~~~~E~k~---p~k~~p~ai~~~~~~~~~~y~~~ 250 (396)
+..+..+...+.. ..+..+. ++. ..+...|...=..+--....|| -.|..-|+-..+.....++|...
T Consensus 163 i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL 242 (427)
T PF05525_consen 163 IFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGL 242 (427)
T ss_pred HHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764332222210 0111111 111 1112222222222222222233 23555566666666777777777
Q ss_pred HHHHHhccCC-CCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCC
Q 016061 251 LLAGTGGLTS-LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYG 329 (396)
Q Consensus 251 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~ 329 (396)
.+.-....+. ++..+....+..+.++..|+....++.+.+.++|+++..+...+++.. |++..| +
T Consensus 243 ~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~y-------------f~~~~~-k 308 (427)
T PF05525_consen 243 AYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEY-------------FSELFP-K 308 (427)
T ss_pred HHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhc-c
Confidence 6665544332 233445567889999999999999999999999999999988887766 444445 3
Q ss_pred CCh-HHHHHHHHHHHHHhhhcHHHHHHHHHH----HHHHH------HhhccccCCCCCcccccccchhhhh
Q 016061 330 TPT-LSILCSATGVIFLSWMSFQEILEFLNF----FFACS------CYVPRFSKDIHSKWWCYYCGVLIIS 389 (396)
Q Consensus 330 ~P~-~ai~~~~~i~~~~~~~~~~~l~~~~~~----~~~~~------~~~~~~~~~~~~~~~~p~~~~~~~~ 389 (396)
.++ ..+....+++.++....+++++++... .|=+. .+.+|..++.+..||.......+++
T Consensus 309 isY~~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~~~~~~~~~~y~~~v~~t~i~s 379 (427)
T PF05525_consen 309 ISYKVWVIIFTIFSFIIANLGLDQIIKISVPILMFIYPVAIVLILLNLFDKFIKNKKIVYRGTVLVTFIFS 379 (427)
T ss_pred cChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCceeeeeehHHHHHH
Confidence 443 345666677778888889999998874 33111 2345555555677777665555543
No 58
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.07 E-value=1.2e-07 Score=90.36 Aligned_cols=240 Identities=16% Similarity=0.154 Sum_probs=153.8
Q ss_pred CCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHH-HHHHHHHH---HHHHHHHHhhccCCCC---------
Q 016061 18 SPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFL-IFPLIWSI---PEALITAELATSFPEN--------- 83 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~-i~~l~~~l---~~a~~~~el~~~~p~~--------- 83 (396)
++..|..+.+.=.+-.++| |.+++|.+... +|.....+.-. ++.+. .. ...-+.-+++++....
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~-sG~~~G~~~~~~i~~l~-~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKN-SGLVMGLLLTVFIGFLC-TYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHh-cchHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 4557888888878888899 99999999988 66643333333 33332 11 1233445566664211
Q ss_pred ---CchhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhh-hhhhHHHHHHHHHHHHHHH-HHhhhh
Q 016061 84 ---GGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN-LLIARIPALLGITGALTYL-NYRGLH 158 (396)
Q Consensus 84 ---Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~~ 158 (396)
.+.|.| .|-+||...+++.....+++.-...++....++-+++..+... ..........+.+.....+ ..+.+|
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk 200 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLK 200 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence 123335 6678999999999999999888888888888888877776211 1122222212222222222 334555
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcccc-CCCccccccccCChHHHHHHHHHhhchhhhhhhhhccccCCCcchH---H
Q 016061 159 IVGFSAVSLLVFSLCPFVVMGILSIPRIK-PRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFP---K 234 (396)
Q Consensus 159 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p---~ 234 (396)
...-+..+.-++.++.++++..-.+.... .++...+. +..+|.-++..++|+|-|......+-+++||| ++.| +
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~-~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P-~~F~g~~g 278 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVT-GWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP-QKFPGPFG 278 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccc-chhhhHHHHHHHHHHhccceEEEehhhcccCh-hhcCCccc
Confidence 55555555555555444444333322211 11222222 24566777889999999999999999999999 6677 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 016061 235 ALLGAVVLVVSSYLIPLLAGTGGLTSLS 262 (396)
Q Consensus 235 ai~~~~~~~~~~y~~~~~~~~~~~~~~~ 262 (396)
..-.++.++.++|....+..+...++|.
T Consensus 279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v 306 (449)
T KOG1304|consen 279 VLNLGMGIVTLLYIFLGFFGYLAFGDDV 306 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999998888765
No 59
>PTZ00206 amino acid transporter; Provisional
Probab=99.06 E-value=2.1e-07 Score=92.01 Aligned_cols=235 Identities=15% Similarity=0.097 Sum_probs=150.0
Q ss_pred hhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHH
Q 016061 24 LPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQE 102 (396)
Q Consensus 24 ~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~ 102 (396)
.+..+.....++| |++++|....+ +|....++..++.+.+ +........+.+.+. +.-++.+-+++.+||+.++++
T Consensus 63 ~~s~fnL~~~~iGaGILsLP~Af~~-~G~v~giillil~a~l-s~ys~~lL~~~~~~~-~~~sY~~la~~~~G~~g~~~v 139 (467)
T PTZ00206 63 AASAFNIASSTVGAGIVGLPSAANS-SGLVMAMIYLIIITAM-TIFSIYALGVAADKT-NIRTYEGVARVLLGPWGSYYV 139 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-hhHHHHHHHHHHHHHH-HHHHHHHHHHHhccC-CCCCHHHHHHHHhCHHHHHHH
Confidence 5666667777899 99999999988 7776555555555555 555556666666653 344677788888999999999
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHhchhhhh-hh------hHHHHHHHH-HHHHHHHHHhhhhHHHHHhHHHHHHHHHH
Q 016061 103 GFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL-LI------ARIPALLGI-TGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (396)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~i~~ 174 (396)
.....+.......++....++.+...++.... +. .+....+.. ...+-....+.++..+++..+.....+..
T Consensus 140 ~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~ 219 (467)
T PTZ00206 140 AATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYL 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHH
Confidence 99999998888889988899888776643211 00 011111111 11222223456666666654444332222
Q ss_pred HHHHHHHHhccccCCCcccc-----cc-------ccCChHHHHHHHHHhhchhhhhhhhhccccCCC-cchHHHHHHHHH
Q 016061 175 FVVMGILSIPRIKPRRWLVV-----DF-------KKVDWRGYFNSMFWNLNYWDKASTLAGEVENPS-KTFPKALLGAVV 241 (396)
Q Consensus 175 ~~~~~i~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-k~~p~ai~~~~~ 241 (396)
.+.+++....+..+.+..+. .. ...+....++...|+|.+.......-+|+|||. |+..|....+..
T Consensus 220 vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~ 299 (467)
T PTZ00206 220 VIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMG 299 (467)
T ss_pred HhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHH
Confidence 22222222211111111110 00 011223445677999999999999999999864 778899999999
Q ss_pred HHHHHHHHHHHHHHhccCCC
Q 016061 242 LVVSSYLIPLLAGTGGLTSL 261 (396)
Q Consensus 242 ~~~~~y~~~~~~~~~~~~~~ 261 (396)
+..++|.++.+..+..++++
T Consensus 300 i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 300 MCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHhhhhccccc
Confidence 99999999999988887754
No 60
>PLN03074 auxin influx permease; Provisional
Probab=99.05 E-value=2.1e-07 Score=91.81 Aligned_cols=235 Identities=10% Similarity=0.008 Sum_probs=132.1
Q ss_pred CcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHH----HhhccCCCCCc--------
Q 016061 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITA----ELATSFPENGG-------- 85 (396)
Q Consensus 19 r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~----el~~~~p~~Gg-------- 85 (396)
++-+..+..+-.....+| |++++|.+..+ +|....++..++.+++ +...++... |..++.|+.+-
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~-~G~v~Gii~lv~~~~l-~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQ-LGMLSGILFQIFYGLL-GSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHH-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 344455555557778889 99999999998 7876555666666665 555555444 55666665331
Q ss_pred hhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 016061 86 YVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAV 165 (396)
Q Consensus 86 ~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 165 (396)
..+-.++.+||.++.+......+........+....++.+....+..+......+...+.+.+. ..+..|...++..
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~---~i~sl~~l~~~S~ 198 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTV---FIPSFHNYRIWSF 198 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHH---HccCHHHHHHHHH
Confidence 1333445689988887765555554444444444444433333222222222222222222222 2344555555443
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCccccccccCChHHHH---HHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHH
Q 016061 166 SLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVL 242 (396)
Q Consensus 166 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~ 242 (396)
+.....+.....+.+......+...... . .+.++...+ ...+|+|.|.-....+-.|+||| ++.++....+...
T Consensus 199 ig~~~tl~~av~i~i~~i~~~~~~~~~~-~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P-~~F~~~~~l~~~~ 275 (473)
T PLN03074 199 LGLLMTTYTAWYMTIAALSHGQVEGVKH-S-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKYIYLAATLY 275 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCC-C-CchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh-hcccchHHHHHHH
Confidence 3333323222222222222222211111 1 122333333 34699999999999999999999 5688888888888
Q ss_pred HHHHHHHHHHHHHhccCCC
Q 016061 243 VVSSYLIPLLAGTGGLTSL 261 (396)
Q Consensus 243 ~~~~y~~~~~~~~~~~~~~ 261 (396)
+...|+...+..+...+++
T Consensus 276 v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 276 VLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred HHHHHHHHHHeeeeeechh
Confidence 8888888877777666654
No 61
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.99 E-value=1.3e-06 Score=83.92 Aligned_cols=335 Identities=12% Similarity=0.031 Sum_probs=190.6
Q ss_pred HHHhhhcc-cccCchhHhhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHHH
Q 016061 29 LIFYEVSG-GPFGVEDSVKAGGGPLL--SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFW 105 (396)
Q Consensus 29 l~~~~~~G-g~f~~~~~~~~~~G~~~--~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~ 105 (396)
+.++.-.| |=.-.|+.+.+.+|..+ ..+++.+.+.. ++ .+...-+++ ..|+..+..+|. ||+.|.+....
T Consensus 16 ~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vg--lP-lLgiiava~---~~g~~~~l~~rv-~~~f~~~f~~~ 88 (439)
T PRK15433 16 MTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVG--LP-VLTVVALAK---VGGGVDSLSTPI-GKVAGVLLATV 88 (439)
T ss_pred HHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHH--HH-HHHHHHHhh---cCCCHHHHhhhc-chHHHHHHHHH
Confidence 34444467 54556777765566543 34555555553 22 112222222 235777777776 78887777554
Q ss_pred HHHHHhhhHhHHHHHHHHH----HHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 016061 106 KWLSGVLDNALYPVLFLDY----LKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIL 181 (396)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 181 (396)
..+.--.. .+..+..+.. ++.+++. . +....+..+++..+..++..+.-|...++-++++...++.++++++.
T Consensus 89 i~l~IGP~-~aiPRtaavsfEm~i~p~~~~-~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~ 165 (439)
T PRK15433 89 CYLAVGPL-FATPRTATVSFEVGIAPLTGD-S-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVA 165 (439)
T ss_pred HHHHHhhc-cccCCccccchhheeeccCCc-c-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44332211 1111221111 2233442 1 24456677888899999999999999999999999999888888888
Q ss_pred HhccccCCCccccc-cccCChH-HH---------HHHHHHhhchhhhhhhhhccccCCC---cchHHHHHHHHHHHHHHH
Q 016061 182 SIPRIKPRRWLVVD-FKKVDWR-GY---------FNSMFWNLNYWDKASTLAGEVENPS---KTFPKALLGAVVLVVSSY 247 (396)
Q Consensus 182 ~~~~~~~~~~~~~~-~~~~~~~-~~---------~~~~~~~~~G~e~~~~~~~E~k~p~---k~~p~ai~~~~~~~~~~y 247 (396)
++.++......+.. .....+. ++ ++...|+..=.++. -....||+| |..-|+-..+.....++|
T Consensus 166 ~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i--~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY 243 (439)
T PRK15433 166 AIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAA--RSRGVTEARLLTRYTVWAGLMAGVGLTLLY 243 (439)
T ss_pred HHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87664322111101 0011111 11 11222222212222 222344432 444455566666666777
Q ss_pred HHHHHHHHhccC-CCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcC
Q 016061 248 LIPLLAGTGGLT-SLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRS 326 (396)
Q Consensus 248 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~ 326 (396)
....+.-....+ .++.++.........++..|++...++.+.+.++|+++..+...++++...+ .-
T Consensus 244 ~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~-------------~~ 310 (439)
T PRK15433 244 LALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ-------------YV 310 (439)
T ss_pred HHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------hc
Confidence 776666554322 1222233445566677788899999999999999999999999887776433 21
Q ss_pred CCCCCh-HHHHHHHHHHHHHhhhcHHHHHHHHHH----HHHH------HHhhccccCCCCCcccccccchhhhhc
Q 016061 327 KYGTPT-LSILCSATGVIFLSWMSFQEILEFLNF----FFAC------SCYVPRFSKDIHSKWWCYYCGVLIISC 390 (396)
Q Consensus 327 ~~~~P~-~ai~~~~~i~~~~~~~~~~~l~~~~~~----~~~~------~~~~~~~~~~~~~~~~~p~~~~~~~~~ 390 (396)
+ .|+ ..+....+++..+....+++++.+... .|=+ .-+.+|..++.++.||.......+++.
T Consensus 311 ~--isY~~~v~i~~l~S~~lSn~G~~~II~~s~PiL~~iYP~~IvLill~l~~~~~~~~~~~y~~~~~~t~i~s~ 383 (439)
T PRK15433 311 P--LSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGI 383 (439)
T ss_pred C--CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCceehHHHHHHHHHHH
Confidence 1 332 345666777777778889999988874 2211 123345455557788877666555544
No 62
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.96 E-value=2e-11 Score=118.95 Aligned_cols=241 Identities=16% Similarity=0.186 Sum_probs=156.1
Q ss_pred CcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCchhhhhhhhh
Q 016061 19 PKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP---ENGGYVIWISSAF 94 (396)
Q Consensus 19 r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p---~~Gg~y~~~~~~~ 94 (396)
||-|.++.++..++.++| |++++|....+ +|....++..++.+.+ +......+.|.....| +.-...+-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~-~G~~~g~i~l~~~~~~-s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQ-SGWVLGIILLVLVALL-SYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHH-hhhhhhhHHHHHHHHH-HHHhhhhhhccccccccccccccccccccccc
Confidence 567899999999999999 99999999988 7776555666666665 7777888888887764 4445666678899
Q ss_pred CChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhh--hhhHHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHHHH
Q 016061 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL--LIARIPALLGITGALTYLN-YRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 95 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 171 (396)
||+.+++......+........+....++.+....+...+ ........++...+..-+. .+..+.............
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 9999999999988888877777777778877777664321 1122222222222222222 233333333333322222
Q ss_pred HHHHHHHHHHHhccc--cCCCccccc-ccc---CChHHHHHHHHHhhchhhhhhhhhccccCCCc--chHHHHHHHHHHH
Q 016061 172 LCPFVVMGILSIPRI--KPRRWLVVD-FKK---VDWRGYFNSMFWNLNYWDKASTLAGEVENPSK--TFPKALLGAVVLV 243 (396)
Q Consensus 172 i~~~~~~~i~~~~~~--~~~~~~~~~-~~~---~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k--~~p~ai~~~~~~~ 243 (396)
+..+........... +..+..... .+. .++...++...++|.+......+.+|+|||+| +..|....+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~ 238 (409)
T PF01490_consen 159 FYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIIC 238 (409)
T ss_pred ceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhh
Confidence 211111111111111 111111111 111 23445567789999999999999999999864 4559999999999
Q ss_pred HHHHHHHHHHHHhccCCC
Q 016061 244 VSSYLIPLLAGTGGLTSL 261 (396)
Q Consensus 244 ~~~y~~~~~~~~~~~~~~ 261 (396)
.++|.+..+......+++
T Consensus 239 ~~~y~~~g~~gy~~fg~~ 256 (409)
T PF01490_consen 239 FIIYLLFGIFGYLAFGDS 256 (409)
T ss_pred hHHhhhhhhcccceeeee
Confidence 999999999988877654
No 63
>PRK11375 allantoin permease; Provisional
Probab=98.95 E-value=1.7e-06 Score=85.79 Aligned_cols=317 Identities=10% Similarity=0.050 Sum_probs=157.4
Q ss_pred ccccCCCCcccchhHHHHHHhhhcc-cccC-chhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhh
Q 016061 12 QKAAKTSPKLTVLPLIALIFYEVSG-GPFG-VEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVI 88 (396)
Q Consensus 12 ~~~~~~~r~l~~~~~~~l~~~~~~G-g~f~-~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~G-g~y~ 88 (396)
++.++.+|+-++++.+.+=++.... +.+. ....+....+....+++.+++.++ .....+-.+..-++.| +...
T Consensus 18 ~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i----~~~~~~l~g~~G~~~Gl~~~v 93 (484)
T PRK11375 18 LPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFF----IAAVMVLNGAAGSKYGVPFAM 93 (484)
T ss_pred CcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHH----HHHHHHHhcccccccCCChhH
Confidence 3356778889999999987776544 2221 122222223444455666666554 2333333444434444 5777
Q ss_pred hhhhhhCChhHHHHHHHHH-HHHhhhHhHHHHHHHHHHH----Hhchhh----------hhhhhHHHHHHHHHHHHHHHH
Q 016061 89 WISSAFGPFWGFQEGFWKW-LSGVLDNALYPVLFLDYLK----HSLPIF----------NLLIARIPALLGITGALTYLN 153 (396)
Q Consensus 89 ~~~~~~g~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 153 (396)
..|..||++-+.+.+.... +......+......++.+. ..+|.. +.+.+.....+++.++.....
T Consensus 94 ~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~ 173 (484)
T PRK11375 94 ILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG 173 (484)
T ss_pred hHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 8888999887787777763 4444445555555555444 333211 111223344445556666777
Q ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccccCCCc---ccccc---ccCChH--HHHHHHHHhhc-hhhhhhhhhcc
Q 016061 154 YRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRW---LVVDF---KKVDWR--GYFNSMFWNLN-YWDKASTLAGE 224 (396)
Q Consensus 154 ~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~---~~~~~---~~~~~~--~~~~~~~~~~~-G~e~~~~~~~E 224 (396)
..|.|...+++.+...+.++..+.+.+..+...+.... .+.+. .+..+. ..+...+-++. +.-..+.++..
T Consensus 174 ~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy 253 (484)
T PRK11375 174 FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQN 253 (484)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcc
Confidence 88999999999988888776665555444433332211 11110 011111 11111121222 33345667777
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHH-HHhh
Q 016061 225 VENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFE-AEMS 303 (396)
Q Consensus 225 ~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~ 303 (396)
.||+ |+.-++...+..+...+..+..+...............+|...+. +........+..+..+++..++.. ....
T Consensus 254 ~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~-~~~~~~~~~~a~l~~v~a~~~tN~~~N~y 331 (484)
T PRK11375 254 AHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQ-RWDSLFASFFAVLVILMTTISTNATGNII 331 (484)
T ss_pred cCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7886 555567666666655554333333221110000012234443333 333333333444445555555533 3444
Q ss_pred hhhHHHHHHhhcCCChhHHhhcCCCCCChHHHHHHHHHHHHHh
Q 016061 304 GDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLS 346 (396)
Q Consensus 304 ~~sR~l~~~a~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~ 346 (396)
+.+-. -...+|++. |++ ++.++..+++.++.
T Consensus 332 s~~~~-----l~~l~pk~i---~~~----~~~~i~~iig~~~~ 362 (484)
T PRK11375 332 PAGYQ-----IAALAPTKL---TYK----NGVLIASIISLLIC 362 (484)
T ss_pred cHHHH-----HHHhCcCcc---chh----hHHHHHHHHHHHhc
Confidence 33332 234566443 221 25555555555544
No 64
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=98.92 E-value=3.8e-06 Score=78.77 Aligned_cols=346 Identities=13% Similarity=0.073 Sum_probs=191.7
Q ss_pred hhHHHHHHhhhcc-cccCchhHhhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHH
Q 016061 24 LPLIALIFYEVSG-GPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGF 100 (396)
Q Consensus 24 ~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~--~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~ 100 (396)
+..-+|.++--.| |=.--|+...+.+|.. ...+++++.+.. +|. ..-++-+. ..||..+..++. ||+.|.
T Consensus 8 ~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVg--lPl---LgiIa~a~-~g~~~~~l~~~i-~~~fg~ 80 (431)
T COG1114 8 IALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVG--LPL---LGIIAVAL-YGGGVESLATRI-GPWFGV 80 (431)
T ss_pred HHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhh--HHH---HHHHHhhc-cCCCHHHHhhhc-cchHHH
Confidence 3344455555567 5445566665545543 345666666553 221 11122221 233455665555 888888
Q ss_pred HHHHHHHHHHhhhHhHHHHHHHH-HHHHhchhhh--hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 016061 101 QEGFWKWLSGVLDNALYPVLFLD-YLKHSLPIFN--LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVV 177 (396)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 177 (396)
+..-..++.--...+ ..+.... |=....|..+ +.....+..++...+..++.++.-|...|+.++++...++.+++
T Consensus 81 ~f~~~iyLsIGPffA-iPRt~~vsfe~~i~p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~i 159 (431)
T COG1114 81 LFAIAIYLSIGPFFA-IPRTGAVSFEVGISPLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLI 159 (431)
T ss_pred HHHHHHHHHhccccc-CCcccchhHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHH
Confidence 776555443221111 1111111 1111222221 23445666778888889999999999999999999999988888
Q ss_pred HHHHHhccccCCCcccc-ccccCChHH-HH-------HHHHHhhchhhhhhhhhccccCCC---cchHHHHHHHHHHHHH
Q 016061 178 MGILSIPRIKPRRWLVV-DFKKVDWRG-YF-------NSMFWNLNYWDKASTLAGEVENPS---KTFPKALLGAVVLVVS 245 (396)
Q Consensus 178 ~~i~~~~~~~~~~~~~~-~~~~~~~~~-~~-------~~~~~~~~G~e~~~~~~~E~k~p~---k~~p~ai~~~~~~~~~ 245 (396)
+.+..+.+.+...-.+. ...+..+.. +. ..+..+|...-..+-=..-.++++ |..-|+-.++......
T Consensus 160 l~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~~~~~~~~~~aglIa~i~La~ 239 (431)
T COG1114 160 LVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTKKQIIKYTIKAGLIAAILLAL 239 (431)
T ss_pred HHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88877665433211110 000111111 11 122333433322222222333432 2223344444444455
Q ss_pred HHHHHHHHHHhccCCCC---ccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHH
Q 016061 246 SYLIPLLAGTGGLTSLS---SEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIF 322 (396)
Q Consensus 246 ~y~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~ 322 (396)
+|....+.- ....+. .++...-+....++.+|+....++...+.++|+++..+...+++.. |
T Consensus 240 iY~~L~ylG--a~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef-------------F 304 (431)
T COG1114 240 IYLSLFYLG--ATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF-------------F 304 (431)
T ss_pred HHHHHHHhc--cchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H
Confidence 555544443 111211 2334445677788888998899999999999999988888776654 5
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHhhhcHHHHHHHHHH----HHHHH------HhhccccCCCCCcccccccchhhhhccc
Q 016061 323 ASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNF----FFACS------CYVPRFSKDIHSKWWCYYCGVLIISCSS 392 (396)
Q Consensus 323 ~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~l~~~~~~----~~~~~------~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 392 (396)
+|+-++=.....+.+...++.++...++++++.+... .|=++ .+.+|..++.++.|+.+.....+++...
T Consensus 305 ~~~~p~~SY~~~v~if~i~sflvan~GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~k~~~~~~~~y~~~l~~t~i~~i~d 384 (431)
T COG1114 305 SKLVPKLSYKTWVIIFTLISFLVANLGLEQIIKISVPVLTAIYPIAIALVLLSFARKLWKNSKRVYRLTLLVTLIISILD 384 (431)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Confidence 5544423334455666777777888888998888773 33111 3456667777888988877777665543
No 65
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.81 E-value=1.9e-05 Score=78.53 Aligned_cols=282 Identities=11% Similarity=-0.025 Sum_probs=152.5
Q ss_pred CCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCchhhhhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGF---LIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~~~~~---~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~ 91 (396)
-.|+++++....-..++.+| ...+.++...+ .|..+..+.+ ..+.++ ....+.-+.+..++. +.-..++|.+
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~T~~e~l~ 114 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFV-LGVLGKKFAIISRKY-NAITINDVLK 114 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc-CCccHHHHHH
Confidence 35889998888877777777 35577777766 5653321211 111111 112233455555554 3447999999
Q ss_pred hhhCCh-hHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 016061 92 SAFGPF-WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (396)
Q Consensus 92 ~~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (396)
+-+|++ ...+.+....+.............+..++..++. +.....+ +.......+....|.|...+...+-..+
T Consensus 115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi---~~~~~ii-i~~~iv~iYt~~GG~~av~~td~iQ~~v 190 (471)
T TIGR02119 115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL---SYLTALF-IFSSSVLIYTTFGGFRAVALTDAIQGIV 190 (471)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999954 5667776666666666666677777777776652 1112111 2223355666777888887777666666
Q ss_pred HHHHHHHHHHHHhcccc-------------CCCccccccccCC-hHHHHHHHHHhhch-----hhhhhhhhccccCCCcc
Q 016061 171 SLCPFVVMGILSIPRIK-------------PRRWLVVDFKKVD-WRGYFNSMFWNLNY-----WDKASTLAGEVENPSKT 231 (396)
Q Consensus 171 ~i~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~G-----~e~~~~~~~E~k~p~k~ 231 (396)
.++..+++....+...+ ++.+.+.. +.+ +.......+|...+ ..-..+-.-..|| +|+
T Consensus 191 ~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~-~~~ 267 (471)
T TIGR02119 191 MFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFG--GDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKD-SKA 267 (471)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCC--CCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCC-HHH
Confidence 55544443333332211 01111111 111 11111112222222 2222223334577 488
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHH
Q 016061 232 FPKALLGAVVLVVSSYLIPLLAGTGGLT-SLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQ 308 (396)
Q Consensus 232 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~ 308 (396)
..|+...+..+...++....+....... .++.++.+..+..+.++..+++..-++...++.+.+++..+.+++.+-.
T Consensus 268 a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~ss~ 345 (471)
T TIGR02119 268 MHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSSST 345 (471)
T ss_pred HhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998877766666554443322110 1123334555666667777787777766666667777766666555544
No 66
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.81 E-value=1.4e-05 Score=77.91 Aligned_cols=282 Identities=12% Similarity=-0.025 Sum_probs=154.0
Q ss_pred CCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhC
Q 016061 18 SPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g 95 (396)
.|+++++....-..+...+ ...+.++...+ .|.... +-.+...+. .+..++.+.+.-++.+ .-..++|.++-+|
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIG-FYELGALVL-LIILGWLFVPIFINNG-AYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHcC-CCchhHHHHHHhC
Confidence 4788888888877777766 45677777766 553221 111111121 3345666766655543 4478999999999
Q ss_pred C-hhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHH
Q 016061 96 P-FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (396)
Q Consensus 96 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~ 174 (396)
+ ....+.+....+......+......+..++..++. +.... ..+...+...+....|.|...+...+=..+.++.
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi---~~~~~-~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~ 153 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL---DLYLS-LLLLGAITILYTVFGGLKAVVWTDTIQAVIMILG 153 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---hHHHH-HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence 8 56777778888888888888888888888887762 11111 1123333445666778888777665555555444
Q ss_pred HHHHHHHHhcccc-C-------CCccc----------cccc----cCChHHHHH-HHHH-hhchhh-hhhhhhccccCCC
Q 016061 175 FVVMGILSIPRIK-P-------RRWLV----------VDFK----KVDWRGYFN-SMFW-NLNYWD-KASTLAGEVENPS 229 (396)
Q Consensus 175 ~~~~~i~~~~~~~-~-------~~~~~----------~~~~----~~~~~~~~~-~~~~-~~~G~e-~~~~~~~E~k~p~ 229 (396)
.+++.+..+.+.+ . .+..+ .... ...|.-... .... ...+.+ ...+-.-..|| +
T Consensus 154 ~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~qR~~a~ks-~ 232 (407)
T TIGR00813 154 TFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVIVQRCLAAKS-A 232 (407)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHHHhhHHHhcCC-H
Confidence 3333332222111 0 00000 0000 011111100 0000 000100 00111123466 4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHh---ccCC--CCc-----cccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHH
Q 016061 230 KTFPKALLGAVVLVVSSYLIPLLAGTG---GLTS--LSS-----EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFE 299 (396)
Q Consensus 230 k~~p~ai~~~~~~~~~~y~~~~~~~~~---~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 299 (396)
|+..|+...+.....+.+.+..+.-.. ..+. .+. .+.+..+..+.++..+++..-++...++.+..++..
T Consensus 233 ~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~mST~~ 312 (407)
T TIGR00813 233 KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAVMSTLS 312 (407)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHHHHhhh
Confidence 888999999887776666544433332 2221 111 244566777788888888777776666666666666
Q ss_pred HHhhhhhHH
Q 016061 300 AEMSGDAFQ 308 (396)
Q Consensus 300 ~~~~~~sR~ 308 (396)
+...+.+-.
T Consensus 313 s~l~a~ss~ 321 (407)
T TIGR00813 313 SQLNSASTV 321 (407)
T ss_pred hhHHHHHHH
Confidence 666555544
No 67
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.75 E-value=3.6e-05 Score=74.09 Aligned_cols=168 Identities=12% Similarity=0.019 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhh
Q 016061 54 SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFN 133 (396)
Q Consensus 54 ~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (396)
.+++.+++.++ ........++.+.+..- ....-.|..||++-+.+...+.++.+.-..+++....++..... +
T Consensus 54 si~aillG~ll-G~i~~A~~s~~Ga~~Gl--pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~--- 126 (442)
T COG1457 54 SLLAILLGNLL-GGIFMAYFSYQGARTGL--PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T--- 126 (442)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhccccCC--ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C---
Confidence 44566666555 33334445555554321 35556677799999999998888888877777777776653222 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccccCCC--ccccccccCChHHHHHHHHHh
Q 016061 134 LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR--WLVVDFKKVDWRGYFNSMFWN 211 (396)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 211 (396)
+.+.+...+++.++.+...+.|.|...+++++.........+......+...+..+ +.+....+..+...+...+-.
T Consensus 127 -~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~ 205 (442)
T COG1457 127 -GLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGS 205 (442)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHH
Confidence 34455555566677788889999999999999999888666665555443222211 111111233444444443333
Q ss_pred hchh-hhhhhhhccccCCC
Q 016061 212 LNYW-DKASTLAGEVENPS 229 (396)
Q Consensus 212 ~~G~-e~~~~~~~E~k~p~ 229 (396)
+..| --++.++.-.|+|+
T Consensus 206 ~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 206 FASWGPYAADYSRYAPSPT 224 (442)
T ss_pred HHhhhhhhhhhhhhcCCCc
Confidence 3333 33455555566653
No 68
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.68 E-value=8.6e-05 Score=73.15 Aligned_cols=238 Identities=8% Similarity=-0.052 Sum_probs=123.6
Q ss_pred cccCCCCcccchhHHHHHHhhhcc-cccCchhHhhh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhhh
Q 016061 13 KAAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKA-GGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIW 89 (396)
Q Consensus 13 ~~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~-~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~G-g~y~~ 89 (396)
+.++.+|+.++++.+.+=++..+. ..+........ .-+....+++.+++.++ ........+..+.+ .| .....
T Consensus 6 pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i-~~~~~~l~~~~G~r---~Gl~~~v~ 81 (442)
T TIGR00800 6 PVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLL-GGIFVALNSRAGAK---YGLPFPVL 81 (442)
T ss_pred CCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHHHHHhhhhHHH---hCCCcchh
Confidence 345667778999999887776554 33333333222 13444455666666554 33333333444443 33 57778
Q ss_pred hhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhh----h-----hHHHHHHHHHHHHHH-HHHhhhhH
Q 016061 90 ISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLL----I-----ARIPALLGITGALTY-LNYRGLHI 159 (396)
Q Consensus 90 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~-~~~~g~~~ 159 (396)
.|..||++-+.+.+.+..+......+......++.++..+....+. . ......+++..+... ....|.|.
T Consensus 82 sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~ 161 (442)
T TIGR00800 82 SRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKI 161 (442)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 8999999999999999888888888888888777765554432111 1 122222222223322 34556666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccccCCCcc-ccc--cccCChHHHHH---HH-HHhhchhhhhhhhhccccCCCcch
Q 016061 160 VGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWL-VVD--FKKVDWRGYFN---SM-FWNLNYWDKASTLAGEVENPSKTF 232 (396)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~---~~-~~~~~G~e~~~~~~~E~k~p~k~~ 232 (396)
..+.+.......++.++.+........+..+.. ... .++.....++. .. -+..++.-..+.++...|++ |+.
T Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~-~~~ 240 (442)
T TIGR00800 162 RHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSK-KTA 240 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCc-cch
Confidence 555555555444433333332222211111111 110 11112222222 11 12224445566777778876 555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016061 233 PKALLGAVVLVVSSYLIPLLAGT 255 (396)
Q Consensus 233 p~ai~~~~~~~~~~y~~~~~~~~ 255 (396)
.++...+.....+...+......
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~a 263 (442)
T TIGR00800 241 IWGQFLALPGGFTLTCFFGILGA 263 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665555555544444
No 69
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.63 E-value=0.00017 Score=71.94 Aligned_cols=281 Identities=10% Similarity=-0.062 Sum_probs=149.5
Q ss_pred CCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCCCchhhhhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGF---LIFPLIWSIPEALITAELATSFPENGGYVIWIS 91 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~~~~~---~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~ 91 (396)
-.|+++++....-..+...+ ..++.++...+ .|..+...+. ....+. ....+.-+.+++++. +.-..++|.+
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~-~~~T~~e~l~ 115 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLS-LGILGKKFAILARKY-NAVTLNDMLR 115 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc-CCccHHHHHH
Confidence 46888887777766666666 35677777766 5553221111 111111 112344456666665 3447889999
Q ss_pred hhhCCh-hHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 016061 92 SAFGPF-WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVF 170 (396)
Q Consensus 92 ~~~g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (396)
+-||++ ...+.+....+......+......+..++..++. +.....+ +.......+....|.|...+...+-..+
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi---~~~~~ii-i~~~iv~iYt~~GGl~av~~TD~iQ~~i 191 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI---SYETGLL-IFGITVALYTAFGGFRAVVLTDALQGIV 191 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 988865 5667777666666666777777777788777652 1111111 2233345566677888877766665555
Q ss_pred HHHHHHHHHHHHhccc-------------cCCCcccccccc-CChHHHHHHH---HHhhchhhhhhhhhccccCCCcchH
Q 016061 171 SLCPFVVMGILSIPRI-------------KPRRWLVVDFKK-VDWRGYFNSM---FWNLNYWDKASTLAGEVENPSKTFP 233 (396)
Q Consensus 171 ~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~~~---~~~~~G~e~~~~~~~E~k~p~k~~p 233 (396)
.++..+++....+... +++.+.+....+ .++....... .....+.....+-.-..||+ |+..
T Consensus 192 ~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~-~~a~ 270 (483)
T PRK09442 192 MLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDS-KALH 270 (483)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCH-HHHH
Confidence 5544443333222111 111111111111 1222111111 11112222222222235775 7888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---ccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhH
Q 016061 234 KALLGAVVLVVSSYLIPLLAGTG---GLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAF 307 (396)
Q Consensus 234 ~ai~~~~~~~~~~y~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR 307 (396)
|+..++......+++.....-.. ..|+ .+..+..+..+.++..+++..-++...++.+.+++..+.+.+.+=
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~--~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ss 345 (483)
T PRK09442 271 RGIIIGTIVVGFLMFGMHLAGALGRAVLPD--LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQSSS 345 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877766666554443221 2232 223455566667777888877777666666677666666654443
No 70
>PRK11017 codB cytosine permease; Provisional
Probab=98.61 E-value=0.00024 Score=69.07 Aligned_cols=221 Identities=11% Similarity=-0.053 Sum_probs=115.8
Q ss_pred cCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhhhhhh
Q 016061 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWISS 92 (396)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~G-g~y~~~~~ 92 (396)
++++|+ +.++.+..-.+..+. ..+.....+...-+....+++.+++.++ ........+..+. +.| +.....|.
T Consensus 5 p~~~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i-~~~~~~l~~~~G~---k~G~~~~v~sR~ 79 (404)
T PRK11017 5 PQSARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLL-LGIYTAALGYIGA---KTGLSTHLLARF 79 (404)
T ss_pred CHHHhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHh---ccCcCHHHHHHH
Confidence 445555 778865554443322 1222222232324454555666666554 3222333334444 334 46678888
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
.||++-+.+.+....+......+.+....+..+....+. +.....+++.++.......|.|...+++++......
T Consensus 80 ~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~-----~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~ 154 (404)
T PRK11017 80 SFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL-----DINLLIVLSGLLMTVTAYFGISALTILSRIAVPAIA 154 (404)
T ss_pred HhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999888888877776666666666656555554441 111223344555666778899999999988887776
Q ss_pred HHHHHHHHHHhcccc-CCCccc-cccccCChHHHHHHH-HHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHH
Q 016061 173 CPFVVMGILSIPRIK-PRRWLV-VDFKKVDWRGYFNSM-FWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSS 246 (396)
Q Consensus 173 ~~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~-~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~ 246 (396)
+..+...+..+...+ ..+... ....+..+...+... -+..++.-..+.++...|+|+ +.-.+...+..+...+
T Consensus 155 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~-~~~~~~~lg~~i~~~~ 230 (404)
T PRK11017 155 LLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAK-IAVLATMVAFFLGNSL 230 (404)
T ss_pred HHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCcc-ceeehhHHHHHHHHHH
Confidence 655544433333221 111111 111122333333221 122344455666777778764 4335555555444433
No 71
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.52 E-value=0.0007 Score=65.41 Aligned_cols=202 Identities=9% Similarity=-0.065 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch
Q 016061 52 LLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP 130 (396)
Q Consensus 52 ~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~G-g~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (396)
...+++.+++.++ ........+..+. +.| ......|..||++-+.+.+....+......+.+....++.++...+
T Consensus 29 ~~ai~aiilG~~i-~~~~~~l~~~~G~---~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~ 104 (386)
T TIGR02358 29 TRGLLAILLGHLV-GVLLLSAAGVIGA---DTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGG 104 (386)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhc---ccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666554 2222333344444 333 5777888899999999999998888888888888888887777654
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccccCCCccccccccCChHHHHHHHHH
Q 016061 131 IFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFW 210 (396)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (396)
...+.........++..+.......|.|...+++.+......+..+........+.+...... ...+..+........-
T Consensus 105 ~~~~~~~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~ 183 (386)
T TIGR02358 105 RLFGEESPMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWN-RAGDMSFAVAVELVIA 183 (386)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcC-CCCCccHHHHHHHHHH
Confidence 321111112222333344666677899999999999888877666665544444333221111 1112233322222111
Q ss_pred h-hchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 016061 211 N-LNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLT 259 (396)
Q Consensus 211 ~-~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~ 259 (396)
. -.+....+.++...|+| |+.-++...+..+...+..++........+
T Consensus 184 ~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~ 232 (386)
T TIGR02358 184 MPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAVTLATG 232 (386)
T ss_pred HHHHHHHHccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 12222356666777775 555677777777777666666665554433
No 72
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.52 E-value=0.00058 Score=68.15 Aligned_cols=278 Identities=11% Similarity=0.060 Sum_probs=137.4
Q ss_pred CCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHH--HHHHHHHHHHHHHHHHHHHHHhhccC----CCCCchhhh
Q 016061 18 SPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLS--LLGFLIFPLIWSIPEALITAELATSF----PENGGYVIW 89 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~--~~~~~i~~l~~~l~~a~~~~el~~~~----p~~Gg~y~~ 89 (396)
.|+++++-...-..++..+ ...+.++.... .|.... .+++.++. +...+.+++--+++ ++.-..++|
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~~~g~~~~~----~~~~~~~~~~~r~~~~~~~~~~T~~e~ 109 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWIAIGLTIGA----YINWKFVAPRLRVYTEAAHNSITLPDF 109 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhcCCccHHHH
Confidence 5788887766555454444 34567777766 555321 11222221 22233333322221 133468999
Q ss_pred hhhhhCC---hhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Q 016061 90 ISSAFGP---FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (396)
Q Consensus 90 ~~~~~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (396)
.++=||+ .+..+.+....+......+......+..++..++. +.... ..+...+...+....|.|...+...+
T Consensus 110 l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi---~~~~~-iii~~~i~~~Yt~~GGl~av~~TD~i 185 (487)
T TIGR02121 110 FENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL---DYKTG-LLIGALIIVIYTFFGGFLAVSWTDFV 185 (487)
T ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---cHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999984 45555665555555555666666666677766652 12111 22233445566677788877776555
Q ss_pred HHHHHHHHHHHHHHHHhcccc-------------CCCccccccccCChHHHHHHHHHhhchhhhhhhhhc---cccCCCc
Q 016061 167 LLVFSLCPFVVMGILSIPRIK-------------PRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAG---EVENPSK 230 (396)
Q Consensus 167 ~~~~~i~~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~---E~k~p~k 230 (396)
=..+.++..+++.+..+...+ ++..+.. ++.++........|.+ |.-...+... -.||+ |
T Consensus 186 Q~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~-g~~~~p~~~qR~~aaks~-k 261 (487)
T TIGR02121 186 QGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMF--KGASVIAIISLLAWGL-GYFGQPHIIVRFMAIRSH-K 261 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCC--CCCCHHHHHHHHHHHH-HhccchHHHHHHHhcCCH-H
Confidence 555544443333332222111 1111111 1222333333222322 2111222222 24664 7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH---HHhccCC---CCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhh
Q 016061 231 TFPKALLGAVVLVVSSYLIPLLA---GTGGLTS---LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSG 304 (396)
Q Consensus 231 ~~p~ai~~~~~~~~~~y~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 304 (396)
+..|+...+.....+.++...+. .....+. .+..+.+..+..+.++..+++..-++...++.+..++..+.+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s 341 (487)
T TIGR02121 262 ELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLV 341 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877754433332221111 1111121 11223445566677777778776666666666777777777766
Q ss_pred hhHH
Q 016061 305 DAFQ 308 (396)
Q Consensus 305 ~sR~ 308 (396)
.+-.
T Consensus 342 ~ss~ 345 (487)
T TIGR02121 342 SSSA 345 (487)
T ss_pred HHHH
Confidence 6544
No 73
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.48 E-value=2.1e-05 Score=76.61 Aligned_cols=286 Identities=13% Similarity=-0.026 Sum_probs=138.8
Q ss_pred CCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhh
Q 016061 18 SPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLL--SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~--~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~ 93 (396)
.|+++++....-..+...| ..++.++...+ .|..+ ..+++.++ .+..++.+++--++. +.-..++|.++-
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~----~~~~~~~~~~~~r~~-~~~T~~e~~~~R 78 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIG----FLLFALFFAPRLRRS-GAVTIPEYLEKR 78 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHH----HHHHHHHTHHHHHHT-T--SHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchh----HHHHHHHHHHhhccc-chhhhhhhhhhh
Confidence 4778888777777777777 35677777766 55432 12222222 222344444443433 344789999999
Q ss_pred hCChh--HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 016061 94 FGPFW--GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 94 ~g~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (396)
+|++. ..+.+....+......+......+..++..++. +.....+ +...+...+....|.|...+...+-..+.
T Consensus 79 yg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi---~~~~~~~-i~~~i~~iYt~~GGl~av~~td~iQ~~i~ 154 (406)
T PF00474_consen 79 YGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI---PYNTAIL-IVGVIVIIYTFFGGLRAVAWTDFIQGVIM 154 (406)
T ss_dssp T-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----HHHHHH-HHHHHHHHTTCTT------SHHHHHHHHH
T ss_pred cCCchhhhhhcccccchhhhhhhhccccccccchhhccch---hhhHHHH-HHHHHHHHhhhhhhHhhhhHHHHHHHHHH
Confidence 99887 666666666677777788888888888877762 2222221 22333344556678887766555544444
Q ss_pred HHHHHHHHHHHhccc-------------cCC---CccccccccC-ChHHHHHHHHHhhchhhhhhhhhcc---ccCCCcc
Q 016061 172 LCPFVVMGILSIPRI-------------KPR---RWLVVDFKKV-DWRGYFNSMFWNLNYWDKASTLAGE---VENPSKT 231 (396)
Q Consensus 172 i~~~~~~~i~~~~~~-------------~~~---~~~~~~~~~~-~~~~~~~~~~~~~~G~e~~~~~~~E---~k~p~k~ 231 (396)
++..+++.+..+.+. +++ .+.|...+.. +........+....|.....+.... .||+ |+
T Consensus 155 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aak~~-~~ 233 (406)
T PF00474_consen 155 IIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFLAAKSP-KT 233 (406)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHHSSSHH-HH
T ss_pred HHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHHhcCCH-HH
Confidence 433333333222111 110 1111110000 0011100100112233333444333 3553 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHH------HHHhccCC---CCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHh
Q 016061 232 FPKALLGAVVLVVSSYLIPLL------AGTGGLTS---LSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEM 302 (396)
Q Consensus 232 ~p~ai~~~~~~~~~~y~~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 302 (396)
..|+...+.....+++..... ......|+ ++..+.+..+..+.++..+++..-++...++.+..++..+.+
T Consensus 234 ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~l 313 (406)
T PF00474_consen 234 ARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSLL 313 (406)
T ss_dssp HHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHHHH
Confidence 888888776555554444211 11222221 123344567788888888888887777777777777777777
Q ss_pred hhhhHHHHHHhhcCC
Q 016061 303 SGDAFQLLGMSEMGM 317 (396)
Q Consensus 303 ~~~sR~l~~~a~dg~ 317 (396)
.+.+-. .+||=+
T Consensus 314 ~a~ss~---~~~Di~ 325 (406)
T PF00474_consen 314 LAISSI---FSRDIY 325 (406)
T ss_dssp HHHHHH---HHHHCC
T ss_pred hhhhhh---hhHHhh
Confidence 776666 466633
No 74
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.40 E-value=0.0013 Score=65.65 Aligned_cols=283 Identities=12% Similarity=-0.003 Sum_probs=147.4
Q ss_pred CCCCcccchhHHHHHHhhh-cc--cccCchhHhhhcCchHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCCCCchhhhh
Q 016061 16 KTSPKLTVLPLIALIFYEV-SG--GPFGVEDSVKAGGGPLLSLLGFL--IFPLIWSIPEALITAELATSFPENGGYVIWI 90 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~-~G--g~f~~~~~~~~~~G~~~~~~~~~--i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~ 90 (396)
.-.|+++++ ..+++.+.. .+ ..++.|+.... .|.....+... ++..+.....+--..+++ +.++.-..++|.
T Consensus 35 ~~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l 111 (493)
T COG0591 35 LGGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFL 111 (493)
T ss_pred ccCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHH
Confidence 356889988 666655543 33 45688888877 55533212111 222222445556666676 444566899999
Q ss_pred hhhhC-ChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhH---HHHHhHH
Q 016061 91 SSAFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHI---VGFSAVS 166 (396)
Q Consensus 91 ~~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~ 166 (396)
++-|| +.+..+.+....+......+......+..++..++ .+....... +...+..+....|.|. +..+|..
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~---~~~~v~~Yt~~gG~~av~~Td~iqg~ 187 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILI---GALIVALYTFLGGLRAVVWTDFIQGL 187 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHH---HHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 99999 89999999999999999999999999988877776 222122222 2233344444555555 4555555
Q ss_pred HHHHHHHHHHHHHHH---Hhccc----c-CCC---ccccccccCChHHHHHHH------HHhhchhhhhhhhhccccCCC
Q 016061 167 LLVFSLCPFVVMGIL---SIPRI----K-PRR---WLVVDFKKVDWRGYFNSM------FWNLNYWDKASTLAGEVENPS 229 (396)
Q Consensus 167 ~~~~~i~~~~~~~i~---~~~~~----~-~~~---~~~~~~~~~~~~~~~~~~------~~~~~G~e~~~~~~~E~k~p~ 229 (396)
+....+..+..+... ++... + .++ .++.+. ...+....... +..+..-+...+.-. .|++
T Consensus 188 im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~~~-~~~~- 264 (493)
T COG0591 188 IMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDG-ALSPIYIISLIAWGTLFLGYFGQPHILPRFMA-AKSI- 264 (493)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccc-cchHHHHHHHHHHHHHHhhhhcCchhhhhhhh-hccH-
Confidence 544444333222222 11100 0 111 011110 11222222211 222223333333333 4444
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH----HHhcc--CCC---CccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHH
Q 016061 230 KTFPKALLGAVVLVVSSYLIPLLA----GTGGL--TSL---SSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEA 300 (396)
Q Consensus 230 k~~p~ai~~~~~~~~~~y~~~~~~----~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 300 (396)
|+.||........-.+.+++..+. ..... +++ ...+.+..+.++.+...++|..-++...++.+...+..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss 344 (493)
T COG0591 265 KSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAILAAVMSTASS 344 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333332222222222111 11111 111 123455678888889999988887777666666666665
Q ss_pred HhhhhhHH
Q 016061 301 EMSGDAFQ 308 (396)
Q Consensus 301 ~~~~~sR~ 308 (396)
.....+-.
T Consensus 345 ~ll~~ss~ 352 (493)
T COG0591 345 QLLVASSA 352 (493)
T ss_pred HHHhhhHH
Confidence 55555544
No 75
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.38 E-value=3.2e-05 Score=74.54 Aligned_cols=242 Identities=16% Similarity=0.093 Sum_probs=135.6
Q ss_pred CCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhC
Q 016061 17 TSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g 95 (396)
.+++-|.+..+.....++.| |++..|.+... .|....++.....+.+ .....+...+.+++.++. .+....++.+|
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~-~Giv~gi~li~~~a~~-s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g 78 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKT-AGLLLGILLIVLSAFL-SLLSLYLLSKCAKKSGER-TYSSLGDLIFG 78 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHH-hcHHHHHHHHHHHHHH-HHhHHHHHHHhhhhcCCC-CHHHHHHHHcC
Confidence 34566788889989999999 99999999988 7766555666666666 777788888888888776 56666777777
Q ss_pred ChhHHHHHHHHHHHHhhhHhHHHHHHHH----HHHHhchhhh--hh-hhH-HHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Q 016061 96 PFWGFQEGFWKWLSGVLDNALYPVLFLD----YLKHSLPIFN--LL-IAR-IPALLGITGALTYLNYRGLHIVGFSAVSL 167 (396)
Q Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (396)
+.-........-..... ...+....++ .....+.... +. ... ..+.++...++.-+.+...-..-+.....
T Consensus 79 ~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~ 157 (411)
T KOG1305|consen 79 KLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSAL 157 (411)
T ss_pred CCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 65422222211111111 0111111111 1111110000 00 000 00112222222222222211222333333
Q ss_pred HHHHHHHHHHHHHHHhcccc---CC--CccccccccCChHHHHHHHHHhhchhhhhhhhhccccCCC-cchHHHHHHHHH
Q 016061 168 LVFSLCPFVVMGILSIPRIK---PR--RWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPS-KTFPKALLGAVV 241 (396)
Q Consensus 168 ~~~~i~~~~~~~i~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-k~~p~ai~~~~~ 241 (396)
.....+..+.+.+.-....+ +. +..+......++...++...++|...+.....-.|+|||+ |++.+....+..
T Consensus 158 s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~ 237 (411)
T KOG1305|consen 158 SLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAII 237 (411)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHH
Confidence 33333333332322222211 11 1111111112455566788999999999999999999997 788889999999
Q ss_pred HHHHHHHHHHHHHHhccCCCC
Q 016061 242 LVVSSYLIPLLAGTGGLTSLS 262 (396)
Q Consensus 242 ~~~~~y~~~~~~~~~~~~~~~ 262 (396)
....+|..........++++.
T Consensus 238 ~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 238 LATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHhhhheecccc
Confidence 999999999999888887644
No 76
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.35 E-value=0.0022 Score=64.34 Aligned_cols=150 Identities=11% Similarity=-0.006 Sum_probs=82.5
Q ss_pred CCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHH--HHHHHHHHHHHHHHHHHHHH-Hh---hccCCCCCchhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLS--LLGFLIFPLIWSIPEALITA-EL---ATSFPENGGYVI 88 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~--~~~~~i~~l~~~l~~a~~~~-el---~~~~p~~Gg~y~ 88 (396)
-.|+++++....-..+...+ ...+.|+...+ .|.... .+++.++.. .....+. .+ ..+.++.-..++
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~~~~~~~~~~----l~~~~~~~~l~~~~~~~~~~~T~~e 112 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWIAIGLTLGAW----INWKLVAGRLRVHTEYNNNALTLPD 112 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCceeHHH
Confidence 36889988877766666665 34577777776 665321 122222211 1111111 11 112223346889
Q ss_pred hhhhhhCC---hhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Q 016061 89 WISSAFGP---FWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAV 165 (396)
Q Consensus 89 ~~~~~~g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 165 (396)
|.++=||+ .+..+.+....+......+......+..++..++. +.... +.+.......+....|.|...+...
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi---~~~~~-iii~~~iv~iYt~~GGl~aV~~TD~ 188 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM---SYETA-LWAGAAATILYTFIGGFLAVSWTDT 188 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHH-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99888884 45656666666666666666666666677666652 22222 2223344556667778887777655
Q ss_pred HHHHHHHHHH
Q 016061 166 SLLVFSLCPF 175 (396)
Q Consensus 166 ~~~~~~i~~~ 175 (396)
+=..+.++..
T Consensus 189 iQ~~imi~g~ 198 (502)
T PRK15419 189 VQASLMIFAL 198 (502)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 77
>PRK12488 acetate permease; Provisional
Probab=98.33 E-value=0.0017 Score=65.80 Aligned_cols=152 Identities=13% Similarity=-0.026 Sum_probs=91.2
Q ss_pred CCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHH--HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLL--SLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~--~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
-.|+++++.......++..+ ...+.++..+. .|... ..+++.++.. ...+.+++--++.. .=..++|.++
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~~~~g~~~g~~----~~~~~~a~~lr~~g-~~T~~d~l~~ 138 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLLYALGVLAGWP----IILFLIAERLRNLG-KYTFADVVSY 138 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHHHHHHHHHHHH----HHHHHHHHHHHHCC-CcchHHHHHH
Confidence 35889988887777777666 34577777766 55532 2222222221 12333444333332 2357777777
Q ss_pred hhC-ChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 016061 93 AFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 93 ~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (396)
=|| |....+.+....+....+........+..++..++. +....+ .+...+...+....|.|...+.+.+=..+.
T Consensus 139 Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi---~~~~~i-ii~~~i~~~Yt~~GGm~av~~td~iQ~~im 214 (549)
T PRK12488 139 RLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI---SYLYAV-VIVGALMVLYVTFGGMLATTWVQIIKAVLL 214 (549)
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 676 678888888888887887888888888777777652 122211 123334455566778888777766666555
Q ss_pred HHHHHHH
Q 016061 172 LCPFVVM 178 (396)
Q Consensus 172 i~~~~~~ 178 (396)
++..+++
T Consensus 215 ~~~~i~~ 221 (549)
T PRK12488 215 LSGTSFM 221 (549)
T ss_pred HHHHHHH
Confidence 5444433
No 78
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.25 E-value=0.0037 Score=63.30 Aligned_cols=226 Identities=12% Similarity=-0.012 Sum_probs=115.5
Q ss_pred CCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHH--HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLS--LLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~--~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
-.|+++++.......++..+ +..+.++.... .|.... .+++.++.. ...+.++|--++.- .-...+|.++
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~~g~~~~~~----i~~~~~a~~lrr~g-~~T~~d~l~~ 138 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYSLGFLVGWP----IILFLIAERLRNLG-RYTFADVASY 138 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CccHHHHHHH
Confidence 35788888665555555555 34577777766 554322 122222221 22344455434331 1245566666
Q ss_pred hhC-ChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 016061 93 AFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 93 ~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (396)
=|+ |....+.+....+.............+..++.+++. +....+ .+...+...+....|.|...+.+.+=..+.
T Consensus 139 Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi---~~~~~i-ii~~~i~~~Yt~~GGm~av~~td~iQ~~im 214 (549)
T TIGR02711 139 RLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL---NYHVAV-VLVGILMVMYVLFGGMLATTWVQIIKAVLL 214 (549)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 565 667888777777766666677777777777776652 121111 223334455666778888777766666655
Q ss_pred HHHHHHHHHHHhcccc--------------CCCcccccccc--CChHHHHHHHHHhhchhhhhhhhhcc---ccCCCcch
Q 016061 172 LCPFVVMGILSIPRIK--------------PRRWLVVDFKK--VDWRGYFNSMFWNLNYWDKASTLAGE---VENPSKTF 232 (396)
Q Consensus 172 i~~~~~~~i~~~~~~~--------------~~~~~~~~~~~--~~~~~~~~~~~~~~~G~e~~~~~~~E---~k~p~k~~ 232 (396)
++..+++.+..+...+ ++......+.. .+....+...+....|.-...|.... .|| +|+.
T Consensus 215 ~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~taks-~k~a 293 (549)
T TIGR02711 215 LFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFTVSD-AKEA 293 (549)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeeeecCC-HHHH
Confidence 5444433322221111 10000001000 01111222211122233333444443 366 4889
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016061 233 PKALLGAVVLVVSSYLIPLLA 253 (396)
Q Consensus 233 p~ai~~~~~~~~~~y~~~~~~ 253 (396)
.|+..++......+|+...+.
T Consensus 294 r~s~~~~~~~~~~~~~~~~~~ 314 (549)
T TIGR02711 294 RKSVFYATGFMGYFYILTFII 314 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999887777777655433
No 79
>PRK09395 actP acetate permease; Provisional
Probab=98.21 E-value=0.0074 Score=61.21 Aligned_cols=152 Identities=11% Similarity=-0.096 Sum_probs=84.6
Q ss_pred CCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~ 94 (396)
-.|+++++.......++..+ ...+.++.... .|.... .+.++..+......+.+++--++.. .-..++|.++=|
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~--~~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Ry 142 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGL--IYSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRL 142 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHH--HHHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHc
Confidence 45888888766666666565 34577777766 565321 1112221101112333333222221 124666766777
Q ss_pred C-ChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Q 016061 95 G-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (396)
Q Consensus 95 g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~ 173 (396)
| |....+.+....+.............+..++..++. +.... +.+.......+....|.|...+.+.+=..+.++
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi---~~~~~-ili~~~i~~iYt~~GGm~av~~TD~iQ~iim~~ 218 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL---NYHVA-VVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLS 218 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 7 568888888887777777777777777777776652 11111 222333445566667888877766555555444
Q ss_pred HHH
Q 016061 174 PFV 176 (396)
Q Consensus 174 ~~~ 176 (396)
..+
T Consensus 219 g~i 221 (551)
T PRK09395 219 GAT 221 (551)
T ss_pred HHH
Confidence 333
No 80
>PRK10484 putative transporter; Provisional
Probab=98.18 E-value=0.011 Score=59.75 Aligned_cols=286 Identities=14% Similarity=0.031 Sum_probs=135.7
Q ss_pred CCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~ 94 (396)
-.|+++++-..+-..++..+ ...+.++.... .|.... .|.....+..+..++.++.--++. +.=..++|.++-|
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~--~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ry 111 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVM--AWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERY 111 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHH--HHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhc
Confidence 46889988776666666555 35677777766 565321 122221111222344444332332 2336889999999
Q ss_pred CChhHHHHHHHHHHHHhhh-HhHHHHHHHHHHHHhch---hhhhhhhH-HHHHH--HHHHHHHHHHHhhhhHHHHHhHHH
Q 016061 95 GPFWGFQEGFWKWLSGVLD-NALYPVLFLDYLKHSLP---IFNLLIAR-IPALL--GITGALTYLNYRGLHIVGFSAVSL 167 (396)
Q Consensus 95 g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~ 167 (396)
|++...+.+....+.+... .+......+..++..+. ..+-+... ..... +..+...+....|.|...+...+=
T Consensus 112 g~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ 191 (523)
T PRK10484 112 DKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTIN 191 (523)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 9887777666666555443 22222222223333221 01111111 11111 112334556667888776655554
Q ss_pred HHHHHHHHHHHHHHHhccc---------------cCCCcccccc--ccCChHHHHHHH-HHhhchhhhhhhhhc---ccc
Q 016061 168 LVFSLCPFVVMGILSIPRI---------------KPRRWLVVDF--KKVDWRGYFNSM-FWNLNYWDKASTLAG---EVE 226 (396)
Q Consensus 168 ~~~~i~~~~~~~i~~~~~~---------------~~~~~~~~~~--~~~~~~~~~~~~-~~~~~G~e~~~~~~~---E~k 226 (396)
..+.++..+++.+..+... +++++..... .+..|...+... +..+.++-.-.++.. -.|
T Consensus 192 ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~~aak 271 (523)
T PRK10484 192 GIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRALGAK 271 (523)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHhCC
Confidence 4444433322222211110 1111211111 112233322211 111112211122222 346
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHH---HHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhh
Q 016061 227 NPSKTFPKALLGAVVLVVSSYLIPLL---AGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMS 303 (396)
Q Consensus 227 ~p~k~~p~ai~~~~~~~~~~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 303 (396)
| +|+..|+...+.....+.+....+ ......|+ +.++.+..+..+.++..+++..-++...++-+..++..+.++
T Consensus 272 ~-~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~-~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l~ 349 (523)
T PRK10484 272 N-LAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD-GLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFLN 349 (523)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 478888888876655444443322 22223332 244456667777778888877766666666666666666666
Q ss_pred hhhHH
Q 016061 304 GDAFQ 308 (396)
Q Consensus 304 ~~sR~ 308 (396)
+.+-.
T Consensus 350 s~st~ 354 (523)
T PRK10484 350 SASTL 354 (523)
T ss_pred HHHHH
Confidence 55544
No 81
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.12 E-value=0.0073 Score=58.71 Aligned_cols=315 Identities=10% Similarity=0.051 Sum_probs=159.9
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCc-hhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGV-EDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWI 90 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~-~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~G-g~y~~~ 90 (396)
.++.+|+-++++-+++=.+...- ..+.+ +.......++...+++.+++-++ .......-+..+.++ | +.-...
T Consensus 34 ~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~i-v~i~m~Lng~~G~~~---gIpFpv~~ 109 (497)
T COG1953 34 TPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLI-VAIFMVLNGHAGSKY---GIPFPVLS 109 (497)
T ss_pred CccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHhccCccccc---CCCchHHH
Confidence 35788999999999886665533 22222 22233323444455666666554 222222222222222 2 233566
Q ss_pred hhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----chhh----------hhhhhHHHHHHHHHHHHHHHHHhh
Q 016061 91 SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHS----LPIF----------NLLIARIPALLGITGALTYLNYRG 156 (396)
Q Consensus 91 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g 156 (396)
|..||-+-+.+-...-.+.-.....+++...+..++.+ +|.. +.+....+..+++-++...+...|
T Consensus 110 RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g 189 (497)
T COG1953 110 RASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKG 189 (497)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 77888777777666666555555555555555554433 3321 112334444444445556667789
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHhccccCCC---ccc-cccccCC-hHHHHHHHHHhhchhhh----hhhhhccccC
Q 016061 157 LHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRR---WLV-VDFKKVD-WRGYFNSMFWNLNYWDK----ASTLAGEVEN 227 (396)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---~~~-~~~~~~~-~~~~~~~~~~~~~G~e~----~~~~~~E~k~ 227 (396)
.+...|++.+......+..+.+.+....+.+..+ ..| -..+..+ +..++.........|-+ .+..+.+.|+
T Consensus 190 ~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s 269 (497)
T COG1953 190 MESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKS 269 (497)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCC
Confidence 9999999999999999888888887766554321 111 1111112 22333333333444433 3445555666
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHH-HHHHHHHHHhHHHHH-HHhhhh
Q 016061 228 PSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKW-WIQAASAMSNLGLFE-AEMSGD 305 (396)
Q Consensus 228 p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~-~~~~~~ 305 (396)
| |+.-++-++++-+...++-+..+......-.-.-+..-.|. ++.++........ +..+..+++.++... +...++
T Consensus 270 ~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp 347 (497)
T COG1953 270 Q-KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPL-DIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSP 347 (497)
T ss_pred h-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCCh
Confidence 5 44455555555555555544444433321100001112343 3344444333333 555555555555532 223332
Q ss_pred hHHHHHHhhcCCChhHHhhcCCCCCChHHHHHHHHHHHHHh
Q 016061 306 AFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLS 346 (396)
Q Consensus 306 sR~l~~~a~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~ 346 (396)
.--+. +.+|++... .++.++..+++.+..
T Consensus 348 ~~D~s-----~l~Pk~in~-------krg~liaA~ial~~~ 376 (497)
T COG1953 348 GYDLS-----ALFPKYINI-------KRGGLIAAIIALLIC 376 (497)
T ss_pred HHHHH-----Hhcccccch-------hhhHHHHHHHHHHHc
Confidence 22222 345655432 235677777777666
No 82
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.01 E-value=0.011 Score=56.54 Aligned_cols=240 Identities=11% Similarity=-0.007 Sum_probs=116.7
Q ss_pred HHHHHHHHHhhccCCC--CCchhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHH
Q 016061 67 IPEALITAELATSFPE--NGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLG 144 (396)
Q Consensus 67 l~~a~~~~el~~~~p~--~Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (396)
.+..+.+-|++.|+-. .-+..+-.++-+||.+++.......+........+..+.+.-++.+++ .+.+...++
T Consensus 23 ~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-----~~~~~~~~~ 97 (358)
T PF01566_consen 23 NLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-----IPLWIWVLL 97 (358)
T ss_pred HHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcHHHHHH
Confidence 3346677777776543 346777778888999988888877777777777776666666665553 222222223
Q ss_pred HHHHHHHHH---HhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccccCC----Ccccccccc-CChHHHHHHHHHhhchhh
Q 016061 145 ITGALTYLN---YRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR----RWLVVDFKK-VDWRGYFNSMFWNLNYWD 216 (396)
Q Consensus 145 ~~~~~~~~~---~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~G~e 216 (396)
..+....+. ..+-|..-|+..++.....+..+...+ ..+++.. .+..++.++ .++.-..+..=+....++
T Consensus 98 ~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~--~~~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~~ 175 (358)
T PF01566_consen 98 VAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAF--IVHPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPHN 175 (358)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH--hcchhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHHH
Confidence 333333332 345555555555555444322222222 1122221 121111111 111111121111222222
Q ss_pred hhhhhh---ccccCCC---cc--hHHH---HHHHHHHHHHHHHHHHHHHHhcc-CCCCccccccHHHHHHHHhch-hHHH
Q 016061 217 KASTLA---GEVENPS---KT--FPKA---LLGAVVLVVSSYLIPLLAGTGGL-TSLSSEWSDGYFAEVGMLIGG-FWLK 283 (396)
Q Consensus 217 ~~~~~~---~E~k~p~---k~--~p~a---i~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 283 (396)
...+-+ |+-.+++ ++ .+.. ...+..+..++-..+.+.....+ +.+....+.....+..+...| ++..
T Consensus 176 lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~ 255 (358)
T PF01566_consen 176 LFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWAR 255 (358)
T ss_pred HHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhcCchHHH
Confidence 222211 1111110 11 2211 12222222222111111111121 222212233446677788888 7999
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhHHHHHHh
Q 016061 284 WWIQAASAMSNLGLFEAEMSGDAFQLLGMS 313 (396)
Q Consensus 284 ~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a 313 (396)
.++.+..+.+.+++..+...+.++.+.+.-
T Consensus 256 ~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 256 YLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 999999999999999888888888776654
No 83
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.01 E-value=0.016 Score=55.62 Aligned_cols=271 Identities=13% Similarity=0.036 Sum_probs=141.5
Q ss_pred hhHHHHHHhhhcc-c-ccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCCCCchhhhhhhhhCChhH
Q 016061 24 LPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAEL--ATSFPENGGYVIWISSAFGPFWG 99 (396)
Q Consensus 24 ~~~~~l~~~~~~G-g-~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el--~~~~p~~Gg~y~~~~~~~g~~~g 99 (396)
...+.-..|+.+| | +.--|..+++.+|. +.++-+++..+...+ -+..+|. +++...+ ..-.| ++..+++..
T Consensus 12 lGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~Gi--Plli~Ef~iGr~~~~~-~~~a~-~~l~~~~~~ 86 (439)
T COG0733 12 LGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGI--PLLLAEFAIGRRGRKN-AVGAF-RKLAPKKKW 86 (439)
T ss_pred HHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhH--HHHHHHHHhhhhcCCC-hhHHH-HHhccCccc
Confidence 3445557788888 5 77888777774444 556666666554343 4556664 4544332 22222 222222223
Q ss_pred HHHHHH-------HHHHHhhhHhHHHHHHHHH-----------HHHhchhhhh-hhhHHHHHHHHHHHHHHHHHhhhhH-
Q 016061 100 FQEGFW-------KWLSGVLDNALYPVLFLDY-----------LKHSLPIFNL-LIARIPALLGITGALTYLNYRGLHI- 159 (396)
Q Consensus 100 ~~~~~~-------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~- 159 (396)
...||. ...+|.....-........ ....+....+ +.......+.+..+..++..+|++.
T Consensus 87 ~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~G 166 (439)
T COG0733 87 EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKG 166 (439)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 333333 2222222221111111111 1111111111 2222333355566677778889986
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhccccCC-----Cccc----cccccCChHHHHHHHHHhh-chhhhhhhhhccccCCC
Q 016061 160 VGFSAVSLLVFSLCPFVVMGILSIPRIKPR-----RWLV----VDFKKVDWRGYFNSMFWNL-NYWDKASTLAGEVENPS 229 (396)
Q Consensus 160 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~p~ 229 (396)
.-|.++++.....+..+++.+-.+...+.. -+.| .. ++..|...+..++|+. .|+..-..+++-.+| +
T Consensus 167 IEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~-~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~ 244 (439)
T COG0733 167 IEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT-DPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-K 244 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC-chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c
Confidence 688888888887776666666554332210 0111 11 1345666777888887 599998888888877 6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHh---ccCCCCcccc---ccHHHHHHHHhc-hhHHHHHHHHHHHHHhHHHHHHH
Q 016061 230 KTFPKALLGAVVLVVSSYLIPLLAGTG---GLTSLSSEWS---DGYFAEVGMLIG-GFWLKWWIQAASAMSNLGLFEAE 301 (396)
Q Consensus 230 k~~p~ai~~~~~~~~~~y~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~ 301 (396)
.|+++.-......-..+-++..+.+.. ....+..+.. -..+.+++++.. |..+..++..+...+.++|..+.
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSm 323 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISM 323 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777766666655544432 2222211111 123566666665 33344444444555555555433
No 84
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.92 E-value=0.023 Score=57.76 Aligned_cols=146 Identities=10% Similarity=-0.056 Sum_probs=88.3
Q ss_pred CCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchH--HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPL--LSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~--~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
-.|+++++....-..++..+ ...+.++.... .|.. +..++|.++.. ..++.+++.-++... -..++|.++
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~~~----~~~~~~~p~~rr~~~-~T~~e~l~~ 103 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGGYV----LLALLLAPYLRKFGK-YTVPDFIGD 103 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHHHH----HHHHHHHHHHHHCCC-ccHHHHHHH
Confidence 45889988877766666665 34577777666 5542 22234433322 245666666666643 378999998
Q ss_pred hhC-ChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 016061 93 AFG-PFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFS 171 (396)
Q Consensus 93 ~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (396)
=|| |....+.+....+......+......+..++...+. +....++ +...+...+....|.|...+...+=..+.
T Consensus 104 Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi---~~~~~ii-i~~~i~~iYt~~GG~~aV~~TD~iQ~iim 179 (552)
T TIGR03648 104 RYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV---DFETGVF-IGMAIVFFYAVLGGMKGVTWTQVAQYIVL 179 (552)
T ss_pred HhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 888 456888887777777777777777777777776652 1222222 22233445556677777666544444443
Q ss_pred H
Q 016061 172 L 172 (396)
Q Consensus 172 i 172 (396)
+
T Consensus 180 ~ 180 (552)
T TIGR03648 180 I 180 (552)
T ss_pred H
Confidence 3
No 85
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.80 E-value=0.039 Score=53.37 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=39.0
Q ss_pred HHHHHHHhhccCCC-CC-chhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch
Q 016061 69 EALITAELATSFPE-NG-GYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP 130 (396)
Q Consensus 69 ~a~~~~el~~~~p~-~G-g~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (396)
.++..=|++-+.-. +| |.-+=.++-++|++++.......+........+..+.+..++.++.
T Consensus 60 ~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 60 MAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444321 23 4667777778888888877776677666666776666666666654
No 86
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.80 E-value=0.002 Score=63.59 Aligned_cols=235 Identities=12% Similarity=-0.021 Sum_probs=117.2
Q ss_pred cCCCCcccchhHHHHHHhhhcc-cccCchhHh-hhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSV-KAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~-~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
++++|+-++++.+.+=++..+. ..+...... ...-+....+++.+++.++..++ ....+.++.++ .-......|.
T Consensus 3 P~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~-~~~~~~~G~r~--Gl~~~v~sR~ 79 (440)
T PF02133_consen 3 PESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAIL-VALMGIIGPRT--GLPTMVLSRA 79 (440)
T ss_dssp --GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHH-HHHHTHHHHCC-----HHHHTTT
T ss_pred chhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHH-HHHhccccccc--CCCchhcchh
Confidence 4567778889999886666544 334443333 22234445566777766652232 33334455543 1257777888
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhh------------hhhHHHHHHHHHHHHHHHHHhhhhHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNL------------LIARIPALLGITGALTYLNYRGLHIV 160 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~ 160 (396)
.||.+-+.+.+.+..+......+.+....++.++...+...+ .....+..++..++.......|.|..
T Consensus 80 ~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 80 SFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp TS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 899999999998888887777777777777777765553311 12222333333445556677888888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhccccCCCccc--cccccCC-hHHHHHHHHHhhc-hhhhhhhhhccccCCCcchHHHH
Q 016061 161 GFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLV--VDFKKVD-WRGYFNSMFWNLN-YWDKASTLAGEVENPSKTFPKAL 236 (396)
Q Consensus 161 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~-G~e~~~~~~~E~k~p~k~~p~ai 236 (396)
.+++.+...+.....+..........+...... ....+.+ +...+....-.+. ..-..+.++...|++ |+..|..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~-~~~~~~~ 238 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSD-TSAWWGF 238 (440)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--H-HHHHHHH
T ss_pred HhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCC-CCcEEEE
Confidence 888887777655544444433332222211111 1111111 1122111111111 112234566677764 5555666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016061 237 LGAVVLVVSSYLIPLLA 253 (396)
Q Consensus 237 ~~~~~~~~~~y~~~~~~ 253 (396)
..+.........+....
T Consensus 239 ~~~~~~~~~~~~~~g~l 255 (440)
T PF02133_consen 239 WLGFPGGFIPFVLVGIL 255 (440)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHHHHHHHHH
Confidence 66666655555544443
No 87
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.77 E-value=0.042 Score=52.93 Aligned_cols=307 Identities=12% Similarity=0.074 Sum_probs=170.2
Q ss_pred cCchhHhhhcC--chHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHHHHHHHHhhhHhH
Q 016061 39 FGVEDSVKAGG--GPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNAL 116 (396)
Q Consensus 39 f~~~~~~~~~~--G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 116 (396)
.+.+..+...+ |. ...++|..+-.+ ..+..+|-=|++-+--=.-.+..|.-.++...+++....+....+...
T Consensus 63 lGiag~I~~~GYdG~-~Y~iG~~~Gy~i----~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Ylia 137 (529)
T COG4147 63 LGIAGLIFISGYDGL-IYSIGWTGGYPI----LLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIA 137 (529)
T ss_pred hchhHhhhhcccchH-HHHHHHHHHHHH----HHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 34555554312 22 345677766554 566777766665222112234466677888999998888888888888
Q ss_pred HHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccccCC-------
Q 016061 117 YPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR------- 189 (396)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~------- 189 (396)
...+.+..+..+++. +. .....++..+...+..+.|.|.+.|.|.+=..+.+...++..+....+.+.+
T Consensus 138 QmvGaG~li~~l~gv---~~-~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~ 213 (529)
T COG4147 138 QMVGAGLLISLLLGV---PY-HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAE 213 (529)
T ss_pred HHHhhHHHHHHHhCC---Cc-eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 888888888888772 11 1222345556667777888888888887766666555544444332221110
Q ss_pred --Cccc---------cccccCChHHHHHHHHHhhchhhhhhhhhccc-cCC-CcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 016061 190 --RWLV---------VDFKKVDWRGYFNSMFWNLNYWDKASTLAGEV-ENP-SKTFPKALLGAVVLVVSSYLIPLLAGTG 256 (396)
Q Consensus 190 --~~~~---------~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~-k~p-~k~~p~ai~~~~~~~~~~y~~~~~~~~~ 256 (396)
+.++ ......++..++...+--..|.-..+|.--.+ --| .|+..|+..++...++.+|+...+.-..
T Consensus 214 ~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 214 AVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred HhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11122356667766666678888888876553 222 3788899999999999999987655332
Q ss_pred ----cc----CC-----------CC-----ccccccHHHHHHHHhc-hhHHHHHHHHHHHHHhHHH----HHHHhhhhhH
Q 016061 257 ----GL----TS-----------LS-----SEWSDGYFAEVGMLIG-GFWLKWWIQAASAMSNLGL----FEAEMSGDAF 307 (396)
Q Consensus 257 ----~~----~~-----------~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s----~~~~~~~~sR 307 (396)
+. +. |. ..+.+.......+.++ ++|+.-++....+-..+++ ..+.-.+.++
T Consensus 294 A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsH 373 (529)
T COG4147 294 ARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSH 373 (529)
T ss_pred HHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 11 11 11 0111222334455566 4666555554443333332 2333445566
Q ss_pred HHHHHhhcCCChhHHhhcCCCCCChHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016061 308 QLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLN 358 (396)
Q Consensus 308 ~l~~~a~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~l~~~~~ 358 (396)
-+|++--|+- .++.++-..-+.+.....+++..+.....+++..+..
T Consensus 374 DiY~~vik~~----ase~~~v~vaRi~~v~~~vva~~lgi~~~gnVaflVa 420 (529)
T COG4147 374 DLYAMVIKKG----ATEKKEVRVARIAVVILGVVAILLGILPPGNVAFLVA 420 (529)
T ss_pred HHHHHHhCCC----CCccceehhHHHHHHHHHHHHHHheecCCccHHHHHH
Confidence 6666544432 2222222333445555555555544332234444444
No 88
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.53 E-value=0.11 Score=51.11 Aligned_cols=64 Identities=9% Similarity=-0.136 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhccCCC-CC-chhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch
Q 016061 67 IPEALITAELATSFPE-NG-GYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLP 130 (396)
Q Consensus 67 l~~a~~~~el~~~~p~-~G-g~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (396)
.+..+.+-|++.|.-. +| +..+-.++-+||+++++......+........+..+.+.-++.+++
T Consensus 75 ~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g 140 (439)
T PRK00701 75 NLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG 140 (439)
T ss_pred HHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3346666676666543 34 7888899999998888765555555555555555555544544443
No 89
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.49 E-value=0.064 Score=50.09 Aligned_cols=272 Identities=14% Similarity=0.074 Sum_probs=144.8
Q ss_pred CCCcccchhHHHHHHhhhcc-ccc-CchhHhhhcCchHHHHHHHHHHHHHHHHHH-HHHHHHhhccCC------CCCchh
Q 016061 17 TSPKLTVLPLIALIFYEVSG-GPF-GVEDSVKAGGGPLLSLLGFLIFPLIWSIPE-ALITAELATSFP------ENGGYV 87 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G-g~f-~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~-a~~~~el~~~~p------~~Gg~y 87 (396)
-.|+++.+-+.+...++=++ +-| +=|+.... -| ++|++.+.+ ..+. .+++..+++++. ++=...
T Consensus 37 gnRsmgg~VlAmt~~aTYisaSSFigGpgaayk-~G-----lgwvlLa~i-qvp~~~l~lgvlgkk~~~~ar~~nAltI~ 109 (473)
T COG4145 37 GNRSMGGIVLAMTFTATYISASSFIGGPGAAYK-YG-----LGWVLLAMI-QVPTVWLALGVLGKKFAILAREYNALTIN 109 (473)
T ss_pred ccCcccceehhhHHHHHHHHHhhhcCCCcHHHH-hc-----hHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhCCeeHH
Confidence 34666655444333333344 222 33444433 33 344444443 3333 234444444332 222233
Q ss_pred hhh-hhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Q 016061 88 IWI-SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (396)
Q Consensus 88 ~~~-~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (396)
++. +|.-++..-++++....+.+...+.+.-.+.+..++...+. +..+-+. +--.....+..+.|.|.+..--.+
T Consensus 110 D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi---dY~tgL~-ifa~~V~iYt~fGGFRAvvltD~I 185 (473)
T COG4145 110 DLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI---DYTTGLL-IFAVSVAIYTAFGGFRAVVLTDTI 185 (473)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC---CchhhHH-HHHHHHHHHHhhcceeeeehHHHH
Confidence 333 34567889999999999999999999989988888887662 1211111 111122344556677765444444
Q ss_pred HHHHHHHHHHHHHHHHhcc-------------ccCCCccccccccCChHHHHHHHHHhhchhhhh--hhhh---ccccCC
Q 016061 167 LLVFSLCPFVVMGILSIPR-------------IKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKA--STLA---GEVENP 228 (396)
Q Consensus 167 ~~~~~i~~~~~~~i~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~--~~~~---~E~k~p 228 (396)
=+.++++..+++.+..+.. .|++-..|.+. +.....-+...+|...|+... ++.+ -..||
T Consensus 186 QG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~-~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD- 263 (473)
T COG4145 186 QGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGA-DDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD- 263 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCC-cccccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-
Confidence 4444444443333322221 12222222211 112233334456666555443 2222 34577
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHh---ccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhh
Q 016061 229 SKTFPKALLGAVVLVVSSYLIPLLAGTG---GLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMS 303 (396)
Q Consensus 229 ~k~~p~ai~~~~~~~~~~y~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 303 (396)
+|.+.++++++..+++++-+.+-.+-.. +.| ++...+.....++-+..+|...-++...-.-+..++.++...
T Consensus 264 skaih~gmiigt~vi~il~~gmhl~G~~graViP--dlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~ 339 (473)
T COG4145 264 SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIP--DLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLL 339 (473)
T ss_pred hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcC--CCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999888777655443 334 344566677788888887766655555544455555555443
No 90
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.31 E-value=0.019 Score=56.81 Aligned_cols=243 Identities=19% Similarity=0.215 Sum_probs=131.5
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 016061 102 EGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIL 181 (396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 181 (396)
.+-..+-+.++.++....++.+=++...|...+ . ...+++++++.+..+..+|....++ .++.+.++..+.+...
T Consensus 98 G~al~~gDgviTPAISVlSAvEGl~v~~p~~~~-~-Vv~it~~ILv~LF~iQ~~GT~~ig~---~FgPim~~WF~~l~~~ 172 (534)
T PF02705_consen 98 GAALFYGDGVITPAISVLSAVEGLEVATPSLEP-Y-VVPITIAILVGLFAIQRFGTAKIGK---LFGPIMLLWFLTLGVL 172 (534)
T ss_pred HhhhhhcceeecchHHHHHHhhhhhccCCCCcc-e-ehhHHHHHHHHHHHHHhhhhhHHHH---HHhHHHHHHHHHHHHH
Confidence 334444566677888888888888777775432 1 2234456666666666666655554 4667777666666666
Q ss_pred Hhcccc--CCC---cccc---c-cccCChHHHH--HHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHH
Q 016061 182 SIPRIK--PRR---WLVV---D-FKKVDWRGYF--NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIP 250 (396)
Q Consensus 182 ~~~~~~--~~~---~~~~---~-~~~~~~~~~~--~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~ 250 (396)
|+.+.- +.- +.|. . ....++.++. ...+.+.+|-|+...--+-. .+|.+.++-.. ...--++.
T Consensus 173 G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~~~~LG~V~L~~TGaEALyADmGHf--g~~~Ir~aw~~----~V~PaL~L 246 (534)
T PF02705_consen 173 GLYNIIQHPEVLKALNPYYAIRFFIRNGWIGFFVLGAVFLCVTGAEALYADMGHF--GRKPIRIAWFF----LVFPALLL 246 (534)
T ss_pred HHHHHhhCHHHHHHhCHHHHHHHHHHcCCchhhhcchHHHHHhhHHHHHhhhccc--cchhhhhhHHH----HHHHHHHH
Confidence 654321 111 1110 0 0122333332 46688999999986422222 23444444433 22233333
Q ss_pred HHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH-HhhcCC-C
Q 016061 251 LLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI-FASRSK-Y 328 (396)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~-~~~~~~-~ 328 (396)
++.-++..=.++.+...+|+.... ++|..+.+.+...+++.-+..+.+.+.=-+..+.-+-|.+|+. ..+.++ .
T Consensus 247 nY~GQgA~ll~~p~~~~npFf~~~----P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~ 322 (534)
T PF02705_consen 247 NYFGQGALLLSHPEAVSNPFFLLI----PEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKE 322 (534)
T ss_pred HHccHHHHHHcCcchhhhHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCccc
Confidence 333332221112223356665544 3466666666666655555566677777777888889999952 333332 2
Q ss_pred -C---CCh-HHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016061 329 -G---TPT-LSILCSATGVIFLSWMSFQEILEFLNF 359 (396)
Q Consensus 329 -~---~P~-~ai~~~~~i~~~~~~~~~~~l~~~~~~ 359 (396)
+ .|. |-+++..++.....+.+=+++.+.+.+
T Consensus 323 ~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGi 358 (534)
T PF02705_consen 323 EGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGI 358 (534)
T ss_pred CCcEechHHHHHHHHHHHhhheEECChHHHHHHHHH
Confidence 2 442 334444444444447788888888885
No 91
>PLN00148 potassium transporter; Provisional
Probab=95.96 E-value=0.09 Score=54.18 Aligned_cols=244 Identities=14% Similarity=0.071 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 016061 102 EGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIL 181 (396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~ 181 (396)
.+-+.+-+.++..+....++.+=++...|...++... .++.++++.+..+..+|... +...++.+.++.++.+...
T Consensus 162 G~am~~gDgvlTPAISVLSAVeGl~v~~p~~~~~~vv-~is~~ILv~LF~vQ~~GT~k---Vg~~FgPIm~lWf~~i~~i 237 (785)
T PLN00148 162 GACMVIGDGVLTPAISVLSSVSGLQVTETKLTDGELV-LLACVILVGLFALQHCGTHR---VAFMFAPIVIIWLLSIGSI 237 (785)
T ss_pred HHHHHHhccccchhHHHHHHhccceecCCCCCCCeeh-hHHHHHHHHHHHHhccccHH---HHhhhhhHHHHHHHHHHHH
Confidence 3334444556667777777777666666654332222 24456666666666666654 4555566666666655555
Q ss_pred Hhcc---ccCCCcccccc-------ccCChHH--HHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHH
Q 016061 182 SIPR---IKPRRWLVVDF-------KKVDWRG--YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI 249 (396)
Q Consensus 182 ~~~~---~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~ 249 (396)
|+.. .++.-+..+++ ...+..+ .+...+.+++|-|+...=-+-+- +|.+.++-.. ...--++
T Consensus 238 Giyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~~~LGgV~L~iTGaEALyADlGHFg--~~~Iriaw~~----~V~P~L~ 311 (785)
T PLN00148 238 GLYNIIHWNPKIIHALSPYYIIKFFRVTGKDGWISLGGILLSITGTEAMFADLGHFT--AASIRLAFAT----VIYPCLV 311 (785)
T ss_pred HHHHHHhcCHHHhhhcCHHHHHHHHHhCCCceEEeecchheeccchhhhhhhccCCC--ccceEEeeee----hHHHHHH
Confidence 5543 23322211110 0112222 12456779999998744222222 2333333322 2222222
Q ss_pred HHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH-HhhcC-C
Q 016061 250 PLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI-FASRS-K 327 (396)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~-~~~~~-~ 327 (396)
.++.-+...=.++.+...+|+... .+++..|.+.+.+.++++-+-.+.+.+.=-++.+.-+-|.+|+. .-+.+ +
T Consensus 312 L~Y~GQaA~ll~~p~~~~npFf~~----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~ 387 (785)
T PLN00148 312 VQYMGQAAFLSKNIPSIPNSFYDS----IPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKH 387 (785)
T ss_pred HHHcchHHHHhcCcccccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCc
Confidence 233222211111112234554443 44566666666665555444456666666667777788999942 33333 2
Q ss_pred -CC---CC-hHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016061 328 -YG---TP-TLSILCSATGVIFLSWMSFQEILEFLNF 359 (396)
Q Consensus 328 -~~---~P-~~ai~~~~~i~~~~~~~~~~~l~~~~~~ 359 (396)
+| .| +|-+++..++...+.+.+-+++.+.+++
T Consensus 388 ~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGi 424 (785)
T PLN00148 388 IYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGL 424 (785)
T ss_pred cCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhh
Confidence 22 34 2233344444444447777788887774
No 92
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=95.91 E-value=0.1 Score=53.31 Aligned_cols=242 Identities=14% Similarity=0.067 Sum_probs=124.6
Q ss_pred HHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHh
Q 016061 104 FWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSI 183 (396)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~ 183 (396)
-.++-+.++..+....++.+=++...|...++. ...++++++..+..+.-+|.. ++...++.++++..+.+...|+
T Consensus 135 al~~gDgviTPAiSVLSAVeGl~v~~p~~~~~~-Vv~it~~ILv~LF~iQ~~GT~---kvg~~FgPim~vWF~~l~~~Gi 210 (688)
T TIGR00794 135 SMVMGDGVLTPAISVLSAVSGLEIVAPSLSDTW-VVPISCIILVLLFLIQRFGTA---KVGFTFAPIILVWLLLLAGIGI 210 (688)
T ss_pred HHHhcccccccchhhhhhhccccccCCCCCCCe-ehhHHHHHHHHHHHHhccccH---HHhhhhhhHHHHHHHHHHHHHH
Confidence 333344556667777777777766666542222 223445555666666666655 4555566666666666666555
Q ss_pred ccc---cCCCcccccc-------ccCChHH--HHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 016061 184 PRI---KPRRWLVVDF-------KKVDWRG--YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPL 251 (396)
Q Consensus 184 ~~~---~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~ 251 (396)
.+. ++.-+...++ ...++.+ .+...+.+.+|-|+...=-+-+- +|.+.++-. ....--++.+
T Consensus 211 ~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~~~~LG~V~L~iTGaEALyADmGHFg--~~~Ir~aw~----~~V~P~L~Ln 284 (688)
T TIGR00794 211 YNIVKFNPEVLKALSPYYAVQFFIEYGTVGWVSLGGVVLSITGVEAMFADLGHFG--KLPIQLAWF----TFVYPSLILC 284 (688)
T ss_pred HHHHhcCHHHHhHhCHHHHHHHHHHCCCceeeeccchhheeccHhhhhcccCCCC--cccceeehH----HHHHHHHHHH
Confidence 432 3221111110 1123333 23556789999998744222221 234433333 2222222333
Q ss_pred HHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH-HhhcCC--C
Q 016061 252 LAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI-FASRSK--Y 328 (396)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~-~~~~~~--~ 328 (396)
+.-++..=.++.+...+|+... .++|..+.+.+.+.++++-+..+.+.+.=-+..+.-+-|.+|+. ..+.++ +
T Consensus 285 Y~GQgA~ll~~p~~~~NpFf~~----~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~ 360 (688)
T TIGR00794 285 YIGQAAYLSKHPEAIKNPFFLS----IPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYH 360 (688)
T ss_pred HcchHHHHhcCcchhcCcHHHh----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccC
Confidence 3322211111112234565544 44667776666666665555566666666777778888999942 333332 2
Q ss_pred -C--CC-hHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016061 329 -G--TP-TLSILCSATGVIFLSWMSFQEILEFLNF 359 (396)
Q Consensus 329 -~--~P-~~ai~~~~~i~~~~~~~~~~~l~~~~~~ 359 (396)
+ .| +|-+++..++.....+.+-+++.+.+++
T Consensus 361 GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGi 395 (688)
T TIGR00794 361 GQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGI 395 (688)
T ss_pred CceeeHHHHHHHHHHHHheeEEecChHHHHHHhhh
Confidence 2 34 2233333444444447777888888874
No 93
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=95.90 E-value=2.1 Score=42.57 Aligned_cols=295 Identities=15% Similarity=0.129 Sum_probs=129.1
Q ss_pred cCCCCcccchhHHHHHHhhhcc-ccc--CchhHhhh-c-------Cch-------------HHHHHHHHHHHHHHHHHHH
Q 016061 15 AKTSPKLTVLPLIALIFYEVSG-GPF--GVEDSVKA-G-------GGP-------------LLSLLGFLIFPLIWSIPEA 70 (396)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~G-g~f--~~~~~~~~-~-------~G~-------------~~~~~~~~i~~l~~~l~~a 70 (396)
++.|.+.|.++-++|.++.-+| |+. +..+-+.. . .+. .|.+.+|.+-++. .++.+
T Consensus 69 ~d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~-~l~~a 147 (485)
T PF02028_consen 69 DDAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALV-GLAIA 147 (485)
T ss_dssp TSS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHH-HHHHH
T ss_pred CCCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHh
Confidence 3456678999999999998877 642 22111110 0 110 1234567776665 66566
Q ss_pred HHHHHhhccCCC--CCchhhhhhhhhCChhHHHHHHHHHHHHhhhHhHH----HHHHHHHHHHhchhhhhhhhHHHHHHH
Q 016061 71 LITAELATSFPE--NGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALY----PVLFLDYLKHSLPIFNLLIARIPALLG 144 (396)
Q Consensus 71 ~~~~el~~~~p~--~Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (396)
+.+-. +..|- +...|....+-..++.|.+.-.+..++.....+.. ....+.-++..++..++...+..+.++
T Consensus 148 y~~y~--k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~ 225 (485)
T PF02028_consen 148 YFFYN--KGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIV 225 (485)
T ss_dssp HHHHT--S---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHH
T ss_pred eeeee--cCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 65555 44343 33344444433334566666666665555443333 222333344444432233333333334
Q ss_pred HHHHHHHHHH----hhhhHHHHHhHHHHHHHHHHHHHHHHHHh-----ccc--c-CCCc-------cccccccCChHH--
Q 016061 145 ITGALTYLNY----RGLHIVGFSAVSLLVFSLCPFVVMGILSI-----PRI--K-PRRW-------LVVDFKKVDWRG-- 203 (396)
Q Consensus 145 ~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~~~i~~~-----~~~--~-~~~~-------~~~~~~~~~~~~-- 203 (396)
+.++.+.-.. +|+|..++++..+....++.+++++=... ... + .+|+ .+... +.+|.+
T Consensus 226 ~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~-~~~w~~~W 304 (485)
T PF02028_consen 226 ITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGN-SGQWPQDW 304 (485)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTT-TTHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccC-cccccCCC
Confidence 4444444444 45556666666655555444433321100 000 0 0011 11111 111332
Q ss_pred -HHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCC-------CCc-c-ccccHHHHH
Q 016061 204 -YFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTS-------LSS-E-WSDGYFAEV 273 (396)
Q Consensus 204 -~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~-------~~~-~-~~~~~~~~~ 273 (396)
.+.-+-|.=.+--....++.=.|- |++ |=.+.+.++.-.+.....+.+.+...- .+. + ...++-..+
T Consensus 305 TvFYwaWWiawaPfvG~FiArISkG--RTI-RE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~~a~ 381 (485)
T PF02028_consen 305 TVFYWAWWIAWAPFVGLFIARISKG--RTI-REFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPEAAL 381 (485)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHCTTT--SBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC--cCH-HHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchhhHH
Confidence 222222221222222333333342 776 555555555555555555554432221 111 1 112222222
Q ss_pred HHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcC
Q 016061 274 GMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (396)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg 316 (396)
.+....-+...++....++.++....+...+.+..+-.++.+|
T Consensus 382 ~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~ 424 (485)
T PF02028_consen 382 FAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG 424 (485)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC
Confidence 2222221234555555555666666677777777777777775
No 94
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.83 E-value=0.11 Score=52.30 Aligned_cols=246 Identities=14% Similarity=0.138 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Q 016061 99 GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVM 178 (396)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 178 (396)
|.+-+-.+.-+.++..+....++.+=++...|...+ . ...++++++..+..+..+|.. ++...++.++++..+.+
T Consensus 106 gl~Gaal~~gDgvITPAISVLSAVEGL~v~~p~l~~-~-Vvpit~~ILv~LF~iQ~~GT~---~vG~~FgPIm~vWF~~i 180 (622)
T PRK10745 106 GLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDT-Y-IVPLSIIVLTLLFMIQKHGTG---MVGKLFAPIMLTWFLTL 180 (622)
T ss_pred HHHHHHHHhhccccchhHHHHHHhhcccccCCCCCC-c-cHHHHHHHHHHHHHHhccccH---HHhhhhhhHHHHHHHHH
Confidence 444444455566777788888888877777775532 1 233445555555566655554 55556677777666666
Q ss_pred HHHHhcccc--CCCcccccc-------ccCChHHH--HHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHH
Q 016061 179 GILSIPRIK--PRRWLVVDF-------KKVDWRGY--FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSY 247 (396)
Q Consensus 179 ~i~~~~~~~--~~~~~~~~~-------~~~~~~~~--~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y 247 (396)
...|+.+.- +.-+...++ ...++.++ +...+.+.+|-|+...--+-. .+|.+.++-..-+. --
T Consensus 181 ~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~gf~~LG~V~L~vTGaEALYADmGHF--G~~~Ir~aW~~~v~----P~ 254 (622)
T PRK10745 181 AVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFFALGAVVLAITGVEALYADMGHF--GKFPIRLAWFTVVL----PS 254 (622)
T ss_pred HHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCceEEEecceeeeccchHHHhhccCCC--CccceeeeehhhHH----HH
Confidence 666665432 211111110 11222222 245677899999874422222 23444333332222 22
Q ss_pred HHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH-HhhcC
Q 016061 248 LIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI-FASRS 326 (396)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~-~~~~~ 326 (396)
++.++.-+...=.++.+...+|+... .++|..+.+.+.+.+++.-+..+.+.+.=.+..+.-+-|.+|+. ..+.+
T Consensus 255 L~LnY~GQgA~ll~~p~~~~NpFf~~----~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS 330 (622)
T PRK10745 255 LVLNYFGQGALLLKNPEAIKNPFFLL----APDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTS 330 (622)
T ss_pred HHHHhcchHHHHhcCchhhcCcHHHh----CChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCC
Confidence 23333333221111223335666554 34566666666666655555566666666677777888999942 33333
Q ss_pred C---CC--CC-hHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016061 327 K---YG--TP-TLSILCSATGVIFLSWMSFQEILEFLNF 359 (396)
Q Consensus 327 ~---~~--~P-~~ai~~~~~i~~~~~~~~~~~l~~~~~~ 359 (396)
+ .+ .| +|-.++..++...+.+.+-+++.+.+++
T Consensus 331 ~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 331 EMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred CccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhh
Confidence 2 22 33 2233344444444447777888888874
No 95
>PLN00149 potassium transporter; Provisional
Probab=95.58 E-value=0.42 Score=49.46 Aligned_cols=242 Identities=13% Similarity=0.067 Sum_probs=117.5
Q ss_pred HHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhcc-
Q 016061 107 WLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPR- 185 (396)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~- 185 (396)
+-+.++..+....++.+=++...|...++.....+++++++.+..+..+|.. |+...++.+.++.++.+...|+..
T Consensus 167 igDgvlTPAISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~---kvg~~FgPIml~Wf~~i~~iGiyni 243 (779)
T PLN00149 167 IGDGVLTPAISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTH---RVGFLFAPVVLTWLLCISAIGVYNI 243 (779)
T ss_pred HhccccchhHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccH---HHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666655532111122123455666666666666655 555556666666666666555543
Q ss_pred --ccCCCcccccc----------ccCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 016061 186 --IKPRRWLVVDF----------KKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLA 253 (396)
Q Consensus 186 --~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~ 253 (396)
.++.-+..+++ +..+|.. +...+.+++|-|+...=-+-+- +|.+..+-..-+.=..++--+-+-+
T Consensus 244 ~~~~p~Vl~AlnP~y~~~f~~~~~~~g~~~-LGgV~L~iTG~EALyADlGHF~--~~~Ir~aw~~~V~P~L~L~Y~GQaA 320 (779)
T PLN00149 244 FHWNPHVYQALSPYYMYKFLKKTQRGGWMS-LGGILLCITGSEAMFADLGHFS--QLSIKIAFTSLVYPSLILAYMGQAA 320 (779)
T ss_pred HhcCHhHhhhcCHHHHHHHHHHCCCceeEe-ecchhhcccchhhhhhcccCCC--ccceeeeehhhHHHHHHHHhhhHHH
Confidence 23322211111 0112222 2456779999998744222222 2333333322121122121122222
Q ss_pred HHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH-HhhcC-C-CC-
Q 016061 254 GTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI-FASRS-K-YG- 329 (396)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~-~~~~~-~-~~- 329 (396)
...-.| +...+..+|+... .+++..|.+.+.+.++++-+-.+.+.+.=-++.+.-+-|.+|+. .-+.+ + ++
T Consensus 321 ~l~~~p-~~~~~~~~pFy~~----iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQ 395 (779)
T PLN00149 321 YLSKHH-VIESDYRIGFYVS----VPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQ 395 (779)
T ss_pred HHhcCc-chhccccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCc
Confidence 222212 1112223344433 44566666666665555444456666666677777788999942 33333 2 22
Q ss_pred --CC-hHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016061 330 --TP-TLSILCSATGVIFLSWMSFQEILEFLNF 359 (396)
Q Consensus 330 --~P-~~ai~~~~~i~~~~~~~~~~~l~~~~~~ 359 (396)
.| +|-+++..++.....+.+-+.+.+.+++
T Consensus 396 IYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGi 428 (779)
T PLN00149 396 IYIPEINWTLMLLCLAVTVGFRDTKRLGNASGL 428 (779)
T ss_pred eeeHHHHHHHHHHHHhheeEecChHHHHHHhhh
Confidence 34 2233333333333447777888888774
No 96
>PLN00150 potassium ion transporter family protein; Provisional
Probab=95.36 E-value=0.1 Score=53.74 Aligned_cols=236 Identities=14% Similarity=0.093 Sum_probs=116.0
Q ss_pred HHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhcc---
Q 016061 109 SGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPR--- 185 (396)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~--- 185 (396)
+.++.++....++.+=++...|...++.. ..+++++++.+..+..+|.. |+...++.+.++.++.+...|+..
T Consensus 186 DgviTPAISVLSAVeGL~v~~p~l~~~~V-v~is~~ILv~LF~iQ~~GT~---kVg~~FgPIm~~Wf~~i~~iGiyni~~ 261 (779)
T PLN00150 186 DGILTPSISVLSAVVGIKAASSGLDTNLV-TIISCVILVILFSLQRFGTH---KVSFLFAPIFLCWFFSLALIGCYNIIK 261 (779)
T ss_pred ccccccchhhhhhhccccccCCCCCCCee-hhhHHHHHHHHHHHHhccch---hhhhhhccHHHHHHHHHHHHHHHHHHh
Confidence 44455566666666666655554422222 22445555666666666655 455556666666666656555543
Q ss_pred ccCCCcccccc-------ccCChHHH--HHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 016061 186 IKPRRWLVVDF-------KKVDWRGY--FNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTG 256 (396)
Q Consensus 186 ~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~ 256 (396)
.++.-+..+++ ...+..++ +...+.+.+|-|+...=-+-+- +|.+..+-. ....--++.++.-+.
T Consensus 262 ~~p~Vl~AlnP~y~~~ff~~~~~~g~~~LG~V~L~iTGaEALyADlGHFg--~~~Iriaw~----~~V~P~LlL~Y~GQa 335 (779)
T PLN00150 262 WDKSVFLAFNPLYIVSFFIRNGRQGWESLGGIVLCMTGTEAMFADLGHFT--VKSMQIAFT----SLVYPCLLLTYLGQA 335 (779)
T ss_pred cCHHHHhhcCHHHHHHHHHhCCCceEEEecceeeeecchhhhhccccCCC--ccceeeeeh----hhHHHHHHHHHcchH
Confidence 22221111110 01122221 2455778999998744222221 233333332 222222233333222
Q ss_pred ccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH-HhhcC-C-CC---C
Q 016061 257 GLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI-FASRS-K-YG---T 330 (396)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~-~~~~~-~-~~---~ 330 (396)
..=.++.+...+|+... .+++..|.+.+.+.++++-+..+.+.+.=-++.+.-+-|.+|+. .-+.+ | +| .
T Consensus 336 A~ll~~p~~~~npFf~~----iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYI 411 (779)
T PLN00150 336 AYLVKHMEDVNDPFYRS----LPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYI 411 (779)
T ss_pred HHHhcCcccccCcHHHh----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceee
Confidence 11111122334454443 44566666666666655544456666666667777788999942 33333 2 22 3
Q ss_pred ChHHHHHHHHHHHH--HhhhcHHHHHHHHHH
Q 016061 331 PTLSILCSATGVIF--LSWMSFQEILEFLNF 359 (396)
Q Consensus 331 P~~ai~~~~~i~~~--~~~~~~~~l~~~~~~ 359 (396)
|. ..|+..+.+++ ..+.+-+++.+.+++
T Consensus 412 P~-vNw~Lmv~~i~vv~~F~~s~~l~~AYGi 441 (779)
T PLN00150 412 PE-INWILMVLCLVITAGFRDTDEIGNAYGI 441 (779)
T ss_pred HH-HHHHHHHHHHhheEEecChHHHHHHhhh
Confidence 42 23333333333 337777888888874
No 97
>PLN00151 potassium transporter; Provisional
Probab=95.32 E-value=0.09 Score=54.31 Aligned_cols=239 Identities=15% Similarity=0.090 Sum_probs=116.6
Q ss_pred HHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhcc
Q 016061 106 KWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPR 185 (396)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~ 185 (396)
.+-+.++..+....++.+=++...|...++.. ..+++++++.+..+.-+|.... ...++.+.++.++.+...|+..
T Consensus 243 viGDGvlTPAISVLSAVeGL~v~~p~l~~~~V-V~Is~~ILv~LF~~Q~~GT~kV---g~~FgPImllWFl~i~~iGiyn 318 (852)
T PLN00151 243 VIGDGVLTPAMSVMSAVSGLKVGVPGFGQDAV-VMISVAFLVILFSVQRFGTSKV---GFAFGPALALWFCSLGGIGIYN 318 (852)
T ss_pred HhcccccccchhhhhhhccccccCCcCCCCee-hhHHHHHHHHHHHHHhccchhh---hhhhccHHHHHHHHHHHHHHHH
Confidence 33345555666666666666666664433222 2345566666666666666554 4455566665555555555543
Q ss_pred ---ccCCCcccccc----------ccCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 016061 186 ---IKPRRWLVVDF----------KKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLL 252 (396)
Q Consensus 186 ---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~ 252 (396)
.++.-+..+++ +..+|. .+...+.+++|-|+...=-+-+- ++.+..+-. ....--++.++
T Consensus 319 I~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw~-~LGgVvLciTGaEALfADLGHFg--~~sIqiaw~----~~V~P~LlL~Y 391 (852)
T PLN00151 319 LVKYDSSVFRAFNPVYIYYFFKRNSTKAWS-ALGGCVLCATGSEAMFADLGYFS--VRSIQLAFT----CLVLPCLLLAY 391 (852)
T ss_pred HHhcCHHHHhhhCHHHHHHHHHhCCCceEE-EecceeeeeccchhhhcccCCCC--ccceeeeeh----hhHHHHHHHHH
Confidence 22221111110 011222 12455778999998744222222 233333322 22222233333
Q ss_pred HHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhH-HhhcC-C-CC
Q 016061 253 AGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAI-FASRS-K-YG 329 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~-~~~~~-~-~~ 329 (396)
.-+...=.++.+...+|+.. ..++++.|.+.+++.++.+-+-.+.+.+.=-++.+.-+-|.+|+. .-+.+ + ++
T Consensus 392 ~GQaA~L~~~p~~~~npFy~----svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~G 467 (852)
T PLN00151 392 MGQAAYLMKNPDSAEQIFFS----SVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMG 467 (852)
T ss_pred cchHHHHhcCcccccCcHHH----hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCC
Confidence 32221111111223444433 244566666655555554444456666666666777778999942 33333 3 22
Q ss_pred ---CC-hHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016061 330 ---TP-TLSILCSATGVIFLSWMSFQEILEFLNF 359 (396)
Q Consensus 330 ---~P-~~ai~~~~~i~~~~~~~~~~~l~~~~~~ 359 (396)
.| +|-+++..++.....+.+-+.+.+.+.+
T Consensus 468 QIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGi 501 (852)
T PLN00151 468 QIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGI 501 (852)
T ss_pred ceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhh
Confidence 34 2233333333333337777788888774
No 98
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=95.20 E-value=0.041 Score=50.75 Aligned_cols=235 Identities=16% Similarity=0.114 Sum_probs=137.4
Q ss_pred cCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc-------h
Q 016061 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGG-------Y 86 (396)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg-------~ 86 (396)
.+.+.|++-+|+..-....+-| =+.++|.++.. +|. +.+.+.+..+-+ +..++-...|.-- -|+.-| .
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~Avlh-GGy-w~i~amvg~A~v-CcyTGk~Li~CLY-E~~~dGevVrvRds 186 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLH-GGY-WSIGAMVGVAYV-CCYTGKLLIECLY-ENGEDGEVVRVRDS 186 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeE-cch-hHHHHHHhhhhh-hhccchhhhhhhc-cCCCCCcEEEeehh
Confidence 4566789999998888877777 56788888776 777 445666655554 4444444444211 111112 2
Q ss_pred h-hhhhhhhCChhH-HHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhh-hhHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 016061 87 V-IWISSAFGPFWG-FQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLL-IARIPALLGITGALTYLNYRGLHIVGFS 163 (396)
Q Consensus 87 y-~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 163 (396)
| ..++.-++|.+| ..+...-++-.......+....++.++.-+|....+ -.|..+ .-..++.+-.+..+|.+.++
T Consensus 187 YvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i--~~a~LLpc~FLk~Lk~VS~l 264 (524)
T KOG4303|consen 187 YVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMI--TSASLLPCSFLKDLKIVSRL 264 (524)
T ss_pred HHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhh--hhHHHhhhHHHHHHHHHHHH
Confidence 3 333333777766 777777777777777888888899998888844322 122222 22233445566889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCccccccccCChH---HHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHH
Q 016061 164 AVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWR---GYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240 (396)
Q Consensus 164 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~ 240 (396)
....+...+++=++++..++.+...-.|..... ..+.. -.+....|+|+.---..++-+.+|||. ..-.-+-++.
T Consensus 265 Sf~ct~sH~viN~i~v~YCLs~~~dW~wskv~F-sidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps-~Fn~Ml~WsH 342 (524)
T KOG4303|consen 265 SFFCTISHLVINLIMVLYCLSFVSDWSWSKVTF-SIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS-QFNVMLKWSH 342 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccceeEEE-EEEcccCceEEEEEEEeeeceeeccccccccCChh-HheeeeehHH
Confidence 999998888777766665554433222222111 00110 111234567776666777778888874 3334444555
Q ss_pred HHHHHHHHHHHHHHHhc
Q 016061 241 VLVVSSYLIPLLAGTGG 257 (396)
Q Consensus 241 ~~~~~~y~~~~~~~~~~ 257 (396)
+...++=.+.......-
T Consensus 343 IAAaVfK~~Fg~~~fLT 359 (524)
T KOG4303|consen 343 IAAAVFKVVFGMLGFLT 359 (524)
T ss_pred HHHHHHHHHHHHheeee
Confidence 55555544444444443
No 99
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.46 E-value=4.6 Score=38.29 Aligned_cols=103 Identities=15% Similarity=0.027 Sum_probs=62.6
Q ss_pred cccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhhhhhhhhCCh
Q 016061 20 KLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWISSAFGPF 97 (396)
Q Consensus 20 ~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~G-g~y~~~~~~~g~~ 97 (396)
..+.+-++.--+.++.| |+..=|-.... -|+...++..+++.+. .= ..-=|..+--..++.| +.-+.+++..||+
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~-~GwlPa~lWI~~G~if-~G-aVHD~~sl~~SvR~~G~Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQ-FGWLPALLWIVFGCIF-AG-AVHDYGSLMASVRHKGKSIGEIAGKYLGKR 127 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHH-hcchHHHHHHHHccHH-HH-HHHHHHHHhhhhcCCCccHHHHHHHHHHHH
Confidence 34556677777888889 76543433334 7776443333333332 21 2222333333344544 6778899999999
Q ss_pred hHHHHHHHHHHHHhhhHhHHHHHHHHHH
Q 016061 98 WGFQEGFWKWLSGVLDNALYPVLFLDYL 125 (396)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (396)
.+.+..+..++...+..++.....++.+
T Consensus 128 ~~~lf~~f~~~~lilV~avF~~v~a~~~ 155 (376)
T PF02554_consen 128 AKKLFLIFIFFLLILVIAVFADVVANTF 155 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888877777666655544443
No 100
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.24 E-value=5.1 Score=40.49 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=54.9
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccccC---------CCccccccccCChHHHHHHHHHhh-chhhhhhhhh
Q 016061 153 NYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKP---------RRWLVVDFKKVDWRGYFNSMFWNL-NYWDKASTLA 222 (396)
Q Consensus 153 ~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~G~e~~~~~~ 222 (396)
..+|+|..+|+......+..+.++++.+-++...+. .++.... ++.-|..++..++|+. .|+.....++
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~-~~~vW~~A~~Q~ffsl~ig~G~~it~~ 273 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL-DPKVWIAALGQVFFSLSIGFGIMITYG 273 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT-SHHHHHHHHHHHHHHTTTTSSHHHHHH
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh-HHHHHHHHHHHHhhccCCCcceEEEEc
Confidence 457888888887766654444444444433322110 0111111 1223677777888887 5899999999
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHH
Q 016061 223 GEVENPSKTFPKALLGAVVLVVSSYLIPL 251 (396)
Q Consensus 223 ~E~k~p~k~~p~ai~~~~~~~~~~y~~~~ 251 (396)
.-.|+ ++|++|.............++..
T Consensus 274 Sy~~~-~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 274 SYNKF-KNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp TTS-T-TS-SHHHHHHHHHHHHHHHHTTG
T ss_pred CcCCC-CccccccceEEEcCchhhhHhHH
Confidence 88887 57788876666666555554443
No 101
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=92.45 E-value=1.8 Score=43.55 Aligned_cols=157 Identities=13% Similarity=0.008 Sum_probs=83.5
Q ss_pred CCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCchhhhhhhhh
Q 016061 18 SPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFP-ENGGYVIWISSAF 94 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p-~~Gg~y~~~~~~~ 94 (396)
-|++.++..-+-.+++-+| ...++|...++ .|...+.+.|..... .. .+.+..+=-.+. +-...|+|.+.-|
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~-~G~~~~~~~~~~l~~--~~--~~~~~f~Pvf~~~~v~~~~eYl~~Rf 118 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYA-YGIQYWFFEWNALLS--VL--LLGWIFIPVFYRLGVTTMYEYLEKRF 118 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHH-HHHHHHHHHHHHHHH--HH--hhheEEEEEEEecCeeehhHHHHHHh
Confidence 3666666665544444444 45688887777 666443333332222 11 222222211121 1247999999999
Q ss_pred CChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHH
Q 016061 95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP 174 (396)
Q Consensus 95 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~ 174 (396)
+++...+....+.+..+...+.....-+..++...+.... ....+.......+....|+|..-+.-.+=+.+++..
T Consensus 119 ~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~----l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~ 194 (585)
T KOG2349|consen 119 GGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLY----LIVVILGLICVFYTALGGLKAVIWTDVVQTVIMLGG 194 (585)
T ss_pred cccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCce----eehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHHHH
Confidence 9997777777777777666666555555555555542211 111122223334555667776555444444455545
Q ss_pred HHHHHHHHh
Q 016061 175 FVVMGILSI 183 (396)
Q Consensus 175 ~~~~~i~~~ 183 (396)
.+.+.+.+.
T Consensus 195 ~~~v~i~gt 203 (585)
T KOG2349|consen 195 VLAVMIKGT 203 (585)
T ss_pred HHHHhheee
Confidence 554454443
No 102
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=90.62 E-value=4.9 Score=40.01 Aligned_cols=275 Identities=17% Similarity=0.138 Sum_probs=139.8
Q ss_pred HHHHHHhhccCCC--CCchhh---hhhhhhCChh------HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhH
Q 016061 70 ALITAELATSFPE--NGGYVI---WISSAFGPFW------GFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIAR 138 (396)
Q Consensus 70 a~~~~el~~~~p~--~Gg~y~---~~~~~~g~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (396)
..=|.-+..+-.+ .||... .+++..+|+. |.+-+-.++-+.++..+....++.+=+...-|..+ ...
T Consensus 71 TiKYv~~vlRADN~GEGGilsL~aL~~~~~~~~~~~l~~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~--~~V 148 (627)
T COG3158 71 TIKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLIILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALD--PYV 148 (627)
T ss_pred HHhhheeEEecCCCCCchhhhHHHHHHhhcCCCchhhhhHHHHhHHHHhcccccchhHHHHHHhccccccCcccc--Ccc
Confidence 4455555555544 467554 4455555433 44444445555666677777777766666555433 223
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccc--cCCCcccccc-------ccCChHHHH--HH
Q 016061 139 IPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRI--KPRRWLVVDF-------KKVDWRGYF--NS 207 (396)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~~-------~~~~~~~~~--~~ 207 (396)
..++++++..+..+..+|....+| .++.++++..+.+...|+.+. +++-....++ .+.++.+++ ..
T Consensus 149 vpitl~IL~~LF~iQ~~GT~~Vg~---~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~vLGa 225 (627)
T COG3158 149 VPITLIILVLLFLIQRFGTGRVGK---LFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFFVLGA 225 (627)
T ss_pred HHHHHHHHHHHHHHhcccchhhhh---hhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEEEeee
Confidence 334556666666677677665555 456666666666666666542 2211111110 012233322 34
Q ss_pred HHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHH
Q 016061 208 MFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQ 287 (396)
Q Consensus 208 ~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (396)
.+.+.+|-|+...--+-+ .+|.+.+|=.. +..--++.++.-++.+-..+.+...+|+..+ .+.|..+-+.
T Consensus 226 VfLavTGaEALYADmGHf--Gr~pI~~AWf~----vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~----~P~~aliP~v 295 (627)
T COG3158 226 VFLAVTGAEALYADMGHF--GRKPIRVAWFF----VVLPCLLLNYFGQGALLLSNPEAIGNPFFLL----APDWALIPLV 295 (627)
T ss_pred eeeeeccHHHHHhhcccc--CCccHHHHHHH----HHHHHHHHHHccccceeccCcccccCcHHHh----ChhhHHHHHH
Confidence 567889999875422222 23444443322 2222444455545443333334445664443 3344444444
Q ss_pred HHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChh-HHhhcC-C-CC---CCh-HHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016061 288 AASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPA-IFASRS-K-YG---TPT-LSILCSATGVIFLSWMSFQEILEFLNF 359 (396)
Q Consensus 288 ~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~-~~~~~~-~-~~---~P~-~ai~~~~~i~~~~~~~~~~~l~~~~~~ 359 (396)
+....++.-+..+.+.+.=-+..+.-|-|++|+ +..+.+ + .| .|. |-+++..++..++.+.+=+++...++.
T Consensus 296 iLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGi 374 (627)
T COG3158 296 ILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGI 374 (627)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhCh
Confidence 444444433334445555555666778899994 233333 2 22 453 233344444444447777778877774
No 103
>PRK09950 putative transporter; Provisional
Probab=89.34 E-value=25 Score=35.20 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=70.4
Q ss_pred CCcccchhHHHHHHhhhcc-ccc--CchhHhhh--------cCch-------------HHHHHHHHHHHHHHHHHHHH-H
Q 016061 18 SPKLTVLPLIALIFYEVSG-GPF--GVEDSVKA--------GGGP-------------LLSLLGFLIFPLIWSIPEAL-I 72 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~G-g~f--~~~~~~~~--------~~G~-------------~~~~~~~~i~~l~~~l~~a~-~ 72 (396)
|.+.|.++-++|.++.-+| |+. +..+-+.. ..+. .|.+-+|.+-++. .++.++ .
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~-~l~iaY~~ 159 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALA-SLIMAYHF 159 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHH
Confidence 6788999999998888777 532 22211110 0111 1345677776666 665555 2
Q ss_pred HHHhhccCCCCCchhhhhhhhhCChhHHHHHHHHHHHHhhhHhHH----HHHHHHHHHHhchhhhhhhhHHHHHHHHHHH
Q 016061 73 TAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALY----PVLFLDYLKHSLPIFNLLIARIPALLGITGA 148 (396)
Q Consensus 73 ~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (396)
+-+-.+...-+...|....+-..+..|.+.-....++.....+.. .....+-++..++...+...+..+.+++..+
T Consensus 160 ~~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~i 239 (506)
T PRK09950 160 HVRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSGVI 239 (506)
T ss_pred HhhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 222221111122222222211123456666655555554443333 2333333444444322222222222233333
Q ss_pred HHHHHH----hhhhHHHHHhHHHHHHHHH
Q 016061 149 LTYLNY----RGLHIVGFSAVSLLVFSLC 173 (396)
Q Consensus 149 ~~~~~~----~g~~~~~~~~~~~~~~~i~ 173 (396)
.+.-.. +|+|..++++..+....++
T Consensus 240 f~~S~~~Gl~kGIk~LS~~N~~la~~ll~ 268 (506)
T PRK09950 240 FCLSSYIGIDNGLQRLSKMVGWGAFLFAL 268 (506)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 333333 5666666666555554443
No 104
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=85.83 E-value=37 Score=33.25 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=70.9
Q ss_pred hhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Q 016061 87 VIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (396)
Q Consensus 87 y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (396)
-+.+++.+|+.-..+.+.+..+++...........++|+++.++ .........++.++...+...|.+..-++..-
T Consensus 264 ~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~----kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~P 339 (427)
T PF05525_consen 264 SQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP----KISYKVWVIIFTIFSFIIANLGLDQIIKISVP 339 (427)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 46777889999999999999999999999999999999999988 23333334566677788888999888777766
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 016061 167 LLVFSLCPFVVMGILSIP 184 (396)
Q Consensus 167 ~~~~~i~~~~~~~i~~~~ 184 (396)
+....--..+++++..+.
T Consensus 340 iL~~iYP~~IvLIll~l~ 357 (427)
T PF05525_consen 340 ILMFIYPVAIVLILLNLF 357 (427)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 665555444445555544
No 105
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=85.60 E-value=37 Score=33.34 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=70.3
Q ss_pred hhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Q 016061 87 VIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (396)
Q Consensus 87 y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (396)
-..+++.+|+....+.+...++++.........+.++++++.++ ........++.++...+...|.+..-++..-
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-----isY~~~v~i~~l~S~~lSn~G~~~II~~s~P 342 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-----LSYRTLVFILGGFSMVVSNLGLSQLIQISVP 342 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 36678889999999999999999999999999999999999876 2233344566777778888899888777766
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 016061 167 LLVFSLCPFVVMGILSIPR 185 (396)
Q Consensus 167 ~~~~~i~~~~~~~i~~~~~ 185 (396)
+....--..+++++..+..
T Consensus 343 iL~~iYP~~IvLill~l~~ 361 (439)
T PRK15433 343 VLTAIYPPCIALVVLSFTR 361 (439)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 6655554444445555543
No 106
>PRK09928 choline transport protein BetT; Provisional
Probab=83.40 E-value=61 Score=33.73 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=71.4
Q ss_pred CCCcccchhHHHHHHhhhcc-cc--cCchhHhhh-------cCch-------------HHHHHHHHHHHHHHHHHHHHHH
Q 016061 17 TSPKLTVLPLIALIFYEVSG-GP--FGVEDSVKA-------GGGP-------------LLSLLGFLIFPLIWSIPEALIT 73 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G-g~--f~~~~~~~~-------~~G~-------------~~~~~~~~i~~l~~~l~~a~~~ 73 (396)
.|.+.|.++.++|.++.=+| |+ ++...-+.. ..+. -|.+-+|.+-+++ .+.. .|
T Consensus 89 ~kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalv-glal--AY 165 (679)
T PRK09928 89 SKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALM-GMAL--GY 165 (679)
T ss_pred CCCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHH--HH
Confidence 35678888899988887777 53 232222211 0111 1335577776665 4433 33
Q ss_pred HHhhccCCC--CCchhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHH----HHHHHHHHhchhhhhhhhHHHHHHHHHH
Q 016061 74 AELATSFPE--NGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPV----LFLDYLKHSLPIFNLLIARIPALLGITG 147 (396)
Q Consensus 74 ~el~~~~p~--~Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (396)
.-.-+..|- +...|-...+-...++|...-....++.+...+...- ....-++.+++.-.+...+..+.+++..
T Consensus 166 f~yr~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~~~~q~~ii~vi~~ 245 (679)
T PRK09928 166 FSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPESLAAQAALIALSVI 245 (679)
T ss_pred HhhcCCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 333344442 2233333322112345666655555555444333322 2222334444422222222222222333
Q ss_pred HHHHHHH----hhhhHHHHHhHHHHHHHHHHHH
Q 016061 148 ALTYLNY----RGLHIVGFSAVSLLVFSLCPFV 176 (396)
Q Consensus 148 ~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~ 176 (396)
+.+.-.. +|+|..+.++..+....++.++
T Consensus 246 i~~~S~~sGl~KGIk~LS~lN~~La~~LllfVl 278 (679)
T PRK09928 246 IATISVTSGVNKGIRVLSELNVLLALGLILFVL 278 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 3333333 6667777777666655554333
No 107
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=82.10 E-value=50 Score=31.83 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=67.4
Q ss_pred hhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Q 016061 88 IWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSL 167 (396)
Q Consensus 88 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 167 (396)
+.+++.+|+.-+.+.+....+++...........++|+.+..+. .+.....++..+....+...|.+..-++....
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k----~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~Pv 334 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK----LSYKTWVIVFTLFSFIVANLGLTQIISISIPV 334 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 77888999999999999999999988888888899999998773 33333344555666667777888887776666
Q ss_pred HHHHHHHHHHHHHHHhc
Q 016061 168 LVFSLCPFVVMGILSIP 184 (396)
Q Consensus 168 ~~~~i~~~~~~~i~~~~ 184 (396)
.....-..+++++..+.
T Consensus 335 L~~~YP~~i~lill~ll 351 (378)
T TIGR00796 335 LMIIYPLAIVLILLSFL 351 (378)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555444444444443
No 108
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=80.55 E-value=67 Score=32.31 Aligned_cols=104 Identities=15% Similarity=0.058 Sum_probs=60.3
Q ss_pred ccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhhhhhhhhCChh
Q 016061 21 LTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENG-GYVIWISSAFGPFW 98 (396)
Q Consensus 21 l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~G-g~y~~~~~~~g~~~ 98 (396)
-+.+-++.-=+.++.| |+..=|...++ -|.....+..+++.+. .-. .-=|.-+-...++.| +.-+.+++..|+..
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq-~G~Lp~~LWIl~G~Vf-aGa-VhD~~~L~~SvR~~G~Si~~ia~~~lG~~a 128 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQ-YGWLPAFLWILLGCVF-AGA-VHDYFSLMLSVRHGGKSIGEIAGKYLGRTA 128 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHH-hcCcHHHHHHHHhhhh-hhh-hhhhhheeeeeccCCccHHHHHHHHhhhhH
Confidence 3445566667777889 87655555555 5633332322333222 211 111222222223443 67888999999999
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Q 016061 99 GFQEGFWKWLSGVLDNALYPVLFLDYLKH 127 (396)
Q Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (396)
+.+.....++-..+..++.+...+..+..
T Consensus 129 ~~~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 129 KVFFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988887777777777776666655543
No 109
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=68.87 E-value=1.3e+02 Score=29.97 Aligned_cols=203 Identities=9% Similarity=-0.043 Sum_probs=100.7
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhh-
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGG-GPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWI- 90 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~-G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~- 90 (396)
.++.+|.-|+++-+.+=.+..++ +.+-......+.+ .+...+.+.+++-++ ...+.-++++ .|..|+.-
T Consensus 49 v~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~-----~~~f~~lns~---~G~~yhIsF 120 (572)
T KOG2466|consen 49 VPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLF-----TAIFLVLNSR---PGSDYHISF 120 (572)
T ss_pred CCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHH-----HHHHHHHccC---CCcccccce
Confidence 35678999999999987776655 5554444443312 222233444444332 3344445453 35556543
Q ss_pred ----hhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh----h----------hhhhHHHHHHHHHHHHHHH
Q 016061 91 ----SSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIF----N----------LLIARIPALLGITGALTYL 152 (396)
Q Consensus 91 ----~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~~~ 152 (396)
|..||=+.+..--..-.+.......+++...++.++.+++.. . .....+....++-++....
T Consensus 121 pv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 121 PVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 334554333333333333333334455555555555443321 1 1122333333333444444
Q ss_pred HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccccC-CC-cc-ccc--cccCChHHHHHHHHHhhchhhhhhhhhccc
Q 016061 153 NYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKP-RR-WL-VVD--FKKVDWRGYFNSMFWNLNYWDKASTLAGEV 225 (396)
Q Consensus 153 ~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-~~-~~-~~~--~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 225 (396)
...+.....++..+-.+......+.+.+..+.+.+. .+ .+ +.+ .....|.-. ......+.+|.+...-.++.
T Consensus 201 ~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~-~~i~~~~~~fstl~~N~pDF 277 (572)
T KOG2466|consen 201 YWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFV-RSIMSCIANFSTLIVNAPDF 277 (572)
T ss_pred eeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHH-HHHHHHHhccchhhccCchh
Confidence 556777777777766666666666666665554443 11 11 111 112234333 35556777777766666654
No 110
>PTZ00206 amino acid transporter; Provisional
Probab=68.03 E-value=76 Score=31.58 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=44.5
Q ss_pred cHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHh
Q 016061 268 GYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFA 323 (396)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~ 323 (396)
....++.+...|++..++..+..++..++...+++......+.+.-++...|+.+.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 35788999988999999999999999999999999988887776655433444443
No 111
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=59.69 E-value=1.8e+02 Score=28.39 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=63.0
Q ss_pred hhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Q 016061 87 VIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVS 166 (396)
Q Consensus 87 y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (396)
-.+.++.||+.-..+.+-+..+++...........+||+....|. ........++.++...+.-.|....-++..-
T Consensus 266 ~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~----~SY~~~v~if~i~sflvan~GL~~Ii~isvP 341 (431)
T COG1114 266 SAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK----LSYKTWVIIFTLISFLVANLGLEQIIKISVP 341 (431)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 467788899999999999999999988888899999999999983 2233334567777777777888887777655
Q ss_pred HHHHHH
Q 016061 167 LLVFSL 172 (396)
Q Consensus 167 ~~~~~i 172 (396)
.....-
T Consensus 342 vL~~iY 347 (431)
T COG1114 342 VLTAIY 347 (431)
T ss_pred HHHHHh
Confidence 554444
No 112
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=59.41 E-value=2e+02 Score=28.95 Aligned_cols=158 Identities=9% Similarity=0.041 Sum_probs=75.1
Q ss_pred CCCcccchhHHHHHHhhhcc-ccc--CchhHhhhc--------Cch-------------HHHHHHHHHHHHHHHHHHHHH
Q 016061 17 TSPKLTVLPLIALIFYEVSG-GPF--GVEDSVKAG--------GGP-------------LLSLLGFLIFPLIWSIPEALI 72 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G-g~f--~~~~~~~~~--------~G~-------------~~~~~~~~i~~l~~~l~~a~~ 72 (396)
.|.+.|.++-++|.++.-+| |+. +..+-+... .+. .|.+-+|.+-++. .++.+
T Consensus 82 ~kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~-~la~a-- 158 (504)
T PRK03356 82 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFL-SVAFG-- 158 (504)
T ss_pred CCCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHH-HHHHH--
Confidence 36778999999998888777 642 222111110 011 1234567766665 54444
Q ss_pred HHHhhccCCC---CCchhhhhh-hhhCChhHHHHHHHHHHHHhhhHhHH----HHHHHHHHHHhchhhhhhhhHHHHHHH
Q 016061 73 TAELATSFPE---NGGYVIWIS-SAFGPFWGFQEGFWKWLSGVLDNALY----PVLFLDYLKHSLPIFNLLIARIPALLG 144 (396)
Q Consensus 73 ~~el~~~~p~---~Gg~y~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (396)
|....+..|. +...|.... +-..+++|.+.-.+..++.....+.. +...+.-++..++...+...+..+.++
T Consensus 159 y~~y~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~~ 238 (504)
T PRK03356 159 YFFFVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITC 238 (504)
T ss_pred HHHHhcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 4444455552 222333332 11123466666666665555444333 222333344444432222222222222
Q ss_pred HHHHHHHHHH----hhhhHHHHHhHHHHHHHHHHHHH
Q 016061 145 ITGALTYLNY----RGLHIVGFSAVSLLVFSLCPFVV 177 (396)
Q Consensus 145 ~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~ 177 (396)
+.++.+.-.. +|+|..++++..+....++.+++
T Consensus 239 i~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vli 275 (504)
T PRK03356 239 WIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFI 275 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2222222222 67777777777666655544433
No 113
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=59.08 E-value=1.8e+02 Score=28.23 Aligned_cols=37 Identities=0% Similarity=-0.284 Sum_probs=26.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhh
Q 016061 270 FAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDA 306 (396)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s 306 (396)
..+..+...|++..+++.+..+.+-.+|..+...+..
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~ 318 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQ 318 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4455666778888888888887777777766665433
No 114
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=52.50 E-value=2.5e+02 Score=27.89 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=16.9
Q ss_pred CCCcccchhHHHHHHhhhcc-cc
Q 016061 17 TSPKLTVLPLIALIFYEVSG-GP 38 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G-g~ 38 (396)
.|.+.|.++-++|.++.-+| |+
T Consensus 33 ~kPefS~~sW~aMlf~aG~G~gl 55 (453)
T TIGR00842 33 EKPEFSTLSWLAMLFAAGMGIGL 55 (453)
T ss_pred CCCCCcchHHHHHHHHHhhhhhh
Confidence 35678888999998888777 53
No 115
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=43.57 E-value=4e+02 Score=27.73 Aligned_cols=200 Identities=14% Similarity=0.170 Sum_probs=106.2
Q ss_pred cchhHHHHHHhhhcc-c-ccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCchhhhhhhh-hCCh
Q 016061 22 TVLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELAT-SFPENGGYVIWISSA-FGPF 97 (396)
Q Consensus 22 ~~~~~~~l~~~~~~G-g-~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~-~~p~~Gg~y~~~~~~-~g~~ 97 (396)
+..+.+.-.++..+| | +.-.|....+.+|. +.++-+++..++..+|. .+.|++- .+-+.|..-.|=|-. .-|-
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGg-aFLIpY~i~l~l~GlP~--~~LE~slGQf~~~g~v~~wrri~Pif~G 115 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGG-AFLIPYLIVLFLFGLPL--FFLEMSLGQFTSQGPVSVWRRICPIFKG 115 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCc-hHHHHHHHHHHHhcchH--HHHHHHHhhhhcCChHHHHHHhChHhcC
Confidence 567777778888888 5 55667777663443 45677777666545554 3445432 233455554443221 1233
Q ss_pred hHHHHH---HHHHHHHhhhHhHHHHHHHHHHHHhchhh------------------------------------------
Q 016061 98 WGFQEG---FWKWLSGVLDNALYPVLFLDYLKHSLPIF------------------------------------------ 132 (396)
Q Consensus 98 ~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 132 (396)
+|+... +....+|....+-......+.+..-+|..
T Consensus 116 vG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (629)
T KOG3660|consen 116 VGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTEYCLDGTSKQNCANLTKLSNALNFNSPVAEFWEN 195 (629)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCCccccccccccccccccccchhhhccchhhhhhh
Confidence 344333 33333333333333333333222222211
Q ss_pred --------------hh-hhhHHHHHHHHH-HHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccccCC-------
Q 016061 133 --------------NL-LIARIPALLGIT-GALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR------- 189 (396)
Q Consensus 133 --------------~~-~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~------- 189 (396)
++ +++. ..++.+. +++.....+|+|.++|+..+.+.+-.+.++++.+-++...+..
T Consensus 196 ~~~~~~~~~~~~~~g~~~w~L-~~~l~~~Wliv~~~i~KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l 274 (629)
T KOG3660|consen 196 RVLSLSDGSGIEDFGSINWPL-ALCLALAWLIVFFCIWKGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYL 274 (629)
T ss_pred hhcccccccccccCCCCChHH-HHHHHHHHHHHHHHHhhcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 00 1111 2222333 3345567799999999988888887777777777665432211
Q ss_pred --CccccccccCChHHHHHHHHHhh-chhhhhhhhhcccc
Q 016061 190 --RWLVVDFKKVDWRGYFNSMFWNL-NYWDKASTLAGEVE 226 (396)
Q Consensus 190 --~~~~~~~~~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k 226 (396)
.+.... ++.-|..+....++++ .|+.....++.-.|
T Consensus 275 ~~~~~kL~-~~~vW~dA~~QiffSlsi~~G~li~laSynk 313 (629)
T KOG3660|consen 275 TPDWTKLL-DPQVWGDAATQIFFSLSIGFGGLIALASYNK 313 (629)
T ss_pred hhhhHhhc-ChhhHHHHHHhHHHhHHHHHhhhheeeeeec
Confidence 111111 2334667777777777 57777777776654
No 116
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=42.73 E-value=3.2e+02 Score=26.43 Aligned_cols=80 Identities=13% Similarity=0.013 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHH
Q 016061 233 PKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGM 312 (396)
Q Consensus 233 p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~ 312 (396)
.-+...+.....+.+..+............-.+.+..+.++.+++.|+...++..+..++..++.+.++..+.+..+.+.
T Consensus 30 ~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~ 109 (394)
T PF03222_consen 30 GAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSL 109 (394)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34455556666666666665544443221111224558899999999999999888888888888888888888777664
No 117
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=39.87 E-value=43 Score=29.01 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=26.6
Q ss_pred hhhhhccccCCC-cchHHHHHHHHHHHHHHHHHHHHH
Q 016061 218 ASTLAGEVENPS-KTFPKALLGAVVLVVSSYLIPLLA 253 (396)
Q Consensus 218 ~~~~~~E~k~p~-k~~p~ai~~~~~~~~~~y~~~~~~ 253 (396)
..---|-..||| |+.||+++.+.....++-++....
T Consensus 200 IgGTIEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 200 IGGTIEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred cCceeecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 333446678999 999999999988887776655443
No 118
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=38.97 E-value=94 Score=20.80 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=28.1
Q ss_pred HHHHHHHhhchhhhhhhhhccccC--CCcchHHHHHHHHHHHHHHHHHH
Q 016061 204 YFNSMFWNLNYWDKASTLAGEVEN--PSKTFPKALLGAVVLVVSSYLIP 250 (396)
Q Consensus 204 ~~~~~~~~~~G~e~~~~~~~E~k~--p~k~~p~ai~~~~~~~~~~y~~~ 250 (396)
.+...+|+|.|-.+-.+.-++.++ |..-+--+++.+.+.+..++.+.
T Consensus 4 ~~~sVl~af~GVqs~~~~e~Df~~~~p~~~Ii~gii~~~~fV~~Lv~lV 52 (56)
T PF11174_consen 4 VVKSVLWAFFGVQSSKNRERDFAQGSPVHFIIVGIILAALFVAGLVLLV 52 (56)
T ss_pred HHHHHHHHHhCcCcchhHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999998888888764 33333334444444444444333
No 119
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=35.58 E-value=3.3e+02 Score=27.36 Aligned_cols=93 Identities=11% Similarity=0.029 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHHHHHHHHhhh------HhHHHHHHHHHHHHhchhhhhhhhHH
Q 016061 66 SIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLD------NALYPVLFLDYLKHSLPIFNLLIARI 139 (396)
Q Consensus 66 ~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (396)
.+..+.+|...+.++.+.....+...+.+...-+++.-.......... ....+...++.++.. +.+..
T Consensus 307 F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~------~~~~~ 380 (502)
T PF03806_consen 307 FLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSL------GLPGI 380 (502)
T ss_pred HHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhc------CCCcH
Confidence 555799999999999988888888888876666665544433332211 122223333333332 12233
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHh
Q 016061 140 PALLGITGALTYLNYRGLHIVGFSA 164 (396)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~~~~~~~~ 164 (396)
...+.+++....+|+.=...++|..
T Consensus 381 ~l~i~fill~a~iNLfi~S~SaKWa 405 (502)
T PF03806_consen 381 PLIIGFILLTAFINLFIGSASAKWA 405 (502)
T ss_pred HHHHHHHHHHHHHHHhhhcchhhHH
Confidence 3446777778888887666666654
No 120
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=32.24 E-value=5.8e+02 Score=26.27 Aligned_cols=117 Identities=6% Similarity=0.018 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccccCCCcccc--cc------ccCChHHHHHHHHH
Q 016061 139 IPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVV--DF------KKVDWRGYFNSMFW 210 (396)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~ 210 (396)
.+..+++.+++.....+|.|.++|+..+.+.+-.+++.++.+-++...+..+.... .. .+..|..+....++
T Consensus 255 ~lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiff 334 (629)
T KOG3659|consen 255 ALCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFF 334 (629)
T ss_pred HHHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHh
Confidence 34444444555677789999999985555555443333333434322211111111 10 12235555555666
Q ss_pred h-hchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 016061 211 N-LNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTG 256 (396)
Q Consensus 211 ~-~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~~~~~~~ 256 (396)
+ ..|+.+...+++-.|- +.|.-|=.+..-.+..+.+++..++...
T Consensus 335 slg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfviFs 380 (629)
T KOG3659|consen 335 SLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFVIFS 380 (629)
T ss_pred hcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5 4799988888876654 3455554455455555555555444443
No 121
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=30.70 E-value=69 Score=26.78 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=23.5
Q ss_pred hccccCCC-cchHHHHHHHHHHHHHHHHHHHHH
Q 016061 222 AGEVENPS-KTFPKALLGAVVLVVSSYLIPLLA 253 (396)
Q Consensus 222 ~~E~k~p~-k~~p~ai~~~~~~~~~~y~~~~~~ 253 (396)
-|...||| |..||+++.+.....+.-++..+.
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 45678998 999999999887776665544433
No 122
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=25.19 E-value=76 Score=24.54 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhccCC--------CCCchhhhhhhhhCChhHHHHHHH
Q 016061 66 SIPEALITAELATSFP--------ENGGYVIWISSAFGPFWGFQEGFW 105 (396)
Q Consensus 66 ~l~~a~~~~el~~~~p--------~~Gg~y~~~~~~~g~~~g~~~~~~ 105 (396)
.=+.+.+.+|.-+.+| +.|=.|-....++||..|-+.-|.
T Consensus 62 vG~la~ALaEvlnv~PIlarRi~l~~~i~~li~aialGK~~GsL~~~~ 109 (110)
T PF13782_consen 62 VGCLAAALAEVLNVFPILARRIGLRRGIPYLIMAIALGKVIGSLFYWL 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHhhhee
Confidence 5556888899877777 123344444556777777766654
No 123
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=23.46 E-value=6.9e+02 Score=24.31 Aligned_cols=81 Identities=12% Similarity=0.053 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHh
Q 016061 234 KALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMS 313 (396)
Q Consensus 234 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a 313 (396)
-+...+.....+....+++..........-.+.+.-+.++.++..|+...++..+..+...+..+.++..+.+.++.+.-
T Consensus 31 ~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l 110 (403)
T PRK15132 31 VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSI 110 (403)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 34444444444444444444433322111112233488899999999999999999888899999999998777776654
Q ss_pred h
Q 016061 314 E 314 (396)
Q Consensus 314 ~ 314 (396)
.
T Consensus 111 ~ 111 (403)
T PRK15132 111 S 111 (403)
T ss_pred H
Confidence 3
No 124
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=22.27 E-value=8.3e+02 Score=24.78 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCCCcccchhHHHHHHhhhcc-cc--cCchhHhhhcC-----ch----------------HHHHHHHHHHHHHHHHHHHH
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GP--FGVEDSVKAGG-----GP----------------LLSLLGFLIFPLIWSIPEAL 71 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~--f~~~~~~~~~~-----G~----------------~~~~~~~~i~~l~~~l~~a~ 71 (396)
+.+-+.+.+..++|.++.=+| |+ +++.+-+.... +. -+.+-+|.+-++. .+
T Consensus 83 ~~~PEfs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lv-al---- 157 (537)
T COG1292 83 DEKPEFSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALV-AL---- 157 (537)
T ss_pred CCCCCcchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHH-HH----
Confidence 455668888888888887667 54 23332221100 00 1334567766665 33
Q ss_pred HHHHhhcc--CCCC--CchhhhhhhhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHH----HHHhchhhhhhhhHHHHHH
Q 016061 72 ITAELATS--FPEN--GGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDY----LKHSLPIFNLLIARIPALL 143 (396)
Q Consensus 72 ~~~el~~~--~p~~--Gg~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 143 (396)
+++-+.-+ .|.. ...|--.++--...+|...-.+.+++.....+...-..+.- ++.+++.-++.+.+..+..
T Consensus 158 alaYf~~rk~~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip~~~~~q~~iI~ 237 (537)
T COG1292 158 ALAYFHYRKGLPLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIPNSFAVQAIIIA 237 (537)
T ss_pred HhheeeEecCCCchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 33333333 2221 12222222222234566666666666665554443333222 3333332222222222212
Q ss_pred HHHHHHHHHHH----hhhhHHHHHhHHHHHHHHHHHH
Q 016061 144 GITGALTYLNY----RGLHIVGFSAVSLLVFSLCPFV 176 (396)
Q Consensus 144 ~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~ 176 (396)
++.+..+.-.. +|+|..++++.......++.++
T Consensus 238 vi~~~~~~S~~sGv~KGIr~LS~~n~~la~~lllfvl 274 (537)
T COG1292 238 VITALFTISVWSGLDKGIRVLSNINMVLAFLLLLFVL 274 (537)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 6777777777666655554333
No 125
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.95 E-value=4.9e+02 Score=21.96 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhCChhHHHHHHHHHHH
Q 016061 55 LLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLS 109 (396)
Q Consensus 55 ~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g~~~g~~~~~~~~~~ 109 (396)
.++++..+++ ++..++.|. ...++.-|++.|.+.|...|..
T Consensus 71 ~igi~~~gv~-Si~aAllY~-------------~~l~k~~g~W~Gi~YG~~~W~i 111 (173)
T PF11085_consen 71 LIGIVFIGVF-SIVAALLYY-------------ALLKKFKGPWPGILYGLAWWAI 111 (173)
T ss_pred HHHHHHHHHH-HHHHHHHHH-------------HHHHHhcccchHHHHHHHHHHH
Confidence 3555555555 665666654 3456666888888888666654
Done!