Query 016061
Match_columns 396
No_of_seqs 132 out of 1648
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 1.6E-48 5.6E-53 382.6 33.4 342 15-359 4-359 (445)
2 3gia_A Uncharacterized protein 100.0 4.8E-45 1.7E-49 357.8 32.6 342 16-361 3-351 (444)
3 4djk_A Probable glutamate/gamm 100.0 2.1E-43 7.2E-48 352.2 33.3 364 14-382 6-407 (511)
4 2jln_A MHP1; hydantoin, transp 99.1 1.4E-07 4.9E-12 92.8 31.0 290 14-312 20-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.1 0.00015 5.2E-09 72.8 19.9 280 18-308 48-376 (593)
6 3dh4_A Sodium/glucose cotransp 97.9 0.0012 4E-08 65.3 21.4 286 17-316 18-352 (530)
7 2a65_A Leutaa, Na(+):neurotran 97.4 0.1 3.5E-06 50.9 26.0 105 143-248 173-291 (519)
8 4ain_A Glycine betaine transpo 67.9 91 0.0031 30.2 17.8 23 16-38 91-114 (539)
9 2hm3_A Nematocyst outer WALL a 33.2 11 0.00037 19.9 0.3 8 389-396 7-14 (31)
10 2wsw_A BCCT family betaine/car 24.9 4.6E+02 0.016 25.1 25.9 22 17-38 87-109 (509)
11 2jln_A MHP1; hydantoin, transp 22.2 5E+02 0.017 24.6 10.2 26 55-81 66-91 (501)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=1.6e-48 Score=382.61 Aligned_cols=342 Identities=19% Similarity=0.290 Sum_probs=296.5
Q ss_pred cCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhh
Q 016061 15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA 93 (396)
Q Consensus 15 ~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~ 93 (396)
++++|+++++|++++.++.++| |+|..|..+.+ +|+. .+++|++++++ .++.+++++|+++++|++||.|+|+++.
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~-~G~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~ 80 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLAS-TGGI-AIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRC 80 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHH-HCTH-HHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHH-hhhH-HHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence 3568999999999999999999 88988877766 6875 56999999998 9999999999999999999999999999
Q ss_pred hCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Q 016061 94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (396)
Q Consensus 94 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~ 173 (396)
+||.+|++.+|.+++++....+......+++++.++|...++++....++++.++...+|++|.|..++++.+.+..+++
T Consensus 81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (445)
T 3l1l_A 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888999999999888886555577777888888999999999999999999999999998
Q ss_pred HHHHHHHHHhccccCCCccc-cccc----cCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHH
Q 016061 174 PFVVMGILSIPRIKPRRWLV-VDFK----KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL 248 (396)
Q Consensus 174 ~~~~~~i~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~ 248 (396)
.++++++.++.+.+++++.+ +... ..++...+...+|+|.|+|..++++||+|||+|++||+++.+..++.++|+
T Consensus 161 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~ 240 (445)
T 3l1l_A 161 PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV 240 (445)
T ss_dssp HHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 88888877776655544422 1111 112333446679999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCC
Q 016061 249 IPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKY 328 (396)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~ 328 (396)
+..++.....|+++...++.|+.+++++..+++...++.+..+++.+++.++.+.+.+|.+++|+|||.+|++|+|+||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~ 320 (445)
T 3l1l_A 241 LSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKA 320 (445)
T ss_dssp HHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTT
T ss_pred HHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCC
Confidence 99999999999988877788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhh--------hcHHHHHHHHHH
Q 016061 329 GTPTLSILCSATGVIFLSW--------MSFQEILEFLNF 359 (396)
Q Consensus 329 ~~P~~ai~~~~~i~~~~~~--------~~~~~l~~~~~~ 359 (396)
++|++++++..+++.++.+ ..++.+.++.++
T Consensus 321 ~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (445)
T 3l1l_A 321 GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVI 359 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999987766552 236677777664
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=4.8e-45 Score=357.84 Aligned_cols=342 Identities=17% Similarity=0.178 Sum_probs=294.9
Q ss_pred CCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhh
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~ 94 (396)
++||+++.+|.+++.++.++| |+|..+......+|+ ..+++|++++++ .++.+++++|+++++|++||.|+|+++.+
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~-~~~~~~~~~el~~~~P~~Gg~y~~~~~~~ 80 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIY-ALLVAYSYTKLGAKIVSNAGPIAFIHKAI 80 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHH-HHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence 468999999999999999999 999888776555788 457999999998 99999999999999999999999999999
Q ss_pred CCh-hHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Q 016061 95 GPF-WGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (396)
Q Consensus 95 g~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~ 173 (396)
||+ .+...+|.+++++....+..+...+++++..++...+++.....++++.++...+|++|.|..++++.+.+..+++
T Consensus 81 G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~ 160 (444)
T 3gia_A 81 GDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLL 160 (444)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 996 3555689999999999999999999999988875444455556778888899999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCccccccccCChHHHH---HHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHHH
Q 016061 174 PFVVMGILSIPRIKPRRWLVVDFKKVDWRGYF---NSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIP 250 (396)
Q Consensus 174 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~~ 250 (396)
.++++++.++...+++++.+.. .+.+|.+.+ ...+|+|.|+|..++++||+|||+|++||++..+..++.++|++.
T Consensus 161 ~~~~~ii~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~ 239 (444)
T 3gia_A 161 ILGLFIFAGLITIHPSYVIPDL-APSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGV 239 (444)
T ss_dssp HHHHHHHHHHHHCCGGGTSCCC-SHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhcCCCC-CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHH
Confidence 8888888887766666665522 233454444 345799999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCcc-ccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCC
Q 016061 251 LLAGTGGLTSLSSE-WSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYG 329 (396)
Q Consensus 251 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~ 329 (396)
.++.....|++++. ..+.|+.+..++..+++...++.+..+++.+++.++.+.+.+|++++|+|||.+|++|+|+|| +
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~~-~ 318 (444)
T 3gia_A 240 AISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVW-F 318 (444)
T ss_dssp HHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTSC-C
T ss_pred HHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCCC-C
Confidence 99999988877754 345788899998888888889999999999999999999999999999999999999999886 5
Q ss_pred CChHHHHHHHHHHHHHh-hhcHHHHHHHHHHHH
Q 016061 330 TPTLSILCSATGVIFLS-WMSFQEILEFLNFFF 361 (396)
Q Consensus 330 ~P~~ai~~~~~i~~~~~-~~~~~~l~~~~~~~~ 361 (396)
+|.+++++..+++.++. ..+++.+.++.++.+
T Consensus 319 ~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (444)
T 3gia_A 319 KSTEGLYITSALGVLFALLFNMEGVASITSAVF 351 (444)
T ss_dssp SCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 69999999999887766 678888888887543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=2.1e-43 Score=352.24 Aligned_cols=364 Identities=20% Similarity=0.220 Sum_probs=270.3
Q ss_pred ccCCCCcccchhHHHHHHhhhcccccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCCchhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELAT--SFPENGGYVIWIS 91 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~Gg~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~--~~p~~Gg~y~~~~ 91 (396)
+++++|++++++++++.++.++| .++++. ... +|+.. ++.+++++++..++.+++++|+++ ++| +||.|+|++
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig-~~~~~~-~~~-~G~~~-~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~ 80 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMA-VYEYPT-FAT-SGFSL-VFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVS 80 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCC-GGGHHH-HHT-TTTHH-HHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHH
T ss_pred cCccCccccHHHHHHHHHHHHHh-hchhHH-HHh-hHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHH
Confidence 45688999999999999999886 444443 333 78854 466666666535679999999999 999 999999999
Q ss_pred hhhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh--chhhh-hhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Q 016061 92 SAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHS--LPIFN-LLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL 168 (396)
Q Consensus 92 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 168 (396)
+.+||++|++.+|.+++++....+......+++++.+ .|... +++......++++++.+.+|++|.|..++++.+.+
T Consensus 81 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 160 (511)
T 4djk_A 81 NTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF 160 (511)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHH
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 9999999999999999999998888888888888766 34332 23446677788888999999999999999999988
Q ss_pred HHHHH-HHHHHHHHHhccc---cC----CCcccccc--ccCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHH
Q 016061 169 VFSLC-PFVVMGILSIPRI---KP----RRWLVVDF--KKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLG 238 (396)
Q Consensus 169 ~~~i~-~~~~~~i~~~~~~---~~----~~~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~ 238 (396)
.++++ .++++++.++... ++ .+..+... ...+....+...+|+|.|+|.+++++||+|||+|++||+++.
T Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~ 240 (511)
T 4djk_A 161 FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL 240 (511)
T ss_dssp HHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHH
Confidence 77544 3444444444321 11 11111111 111222345677999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccccc---HHHHHHHHhc--hhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHh
Q 016061 239 AVVLVVSSYLIPLLAGTGGLTSLSSEWSDG---YFAEVGMLIG--GFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMS 313 (396)
Q Consensus 239 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a 313 (396)
+..++.++|++..++.....|+++....+. ++..+.+..+ .++...++.+..+++.+++.++++.+.+|++++++
T Consensus 241 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~a 320 (511)
T 4djk_A 241 LMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTA 320 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999887654433 2333334444 47788888999999999999999999999999999
Q ss_pred hcCCChhHHhhcCCCCCChHHHHHHHHHHHH-Hh-hhc--------HHHHHHHHHHH----HHHH----HhhccccCCCC
Q 016061 314 EMGMLPAIFASRSKYGTPTLSILCSATGVIF-LS-WMS--------FQEILEFLNFF----FACS----CYVPRFSKDIH 375 (396)
Q Consensus 314 ~dg~lP~~~~~~~~~~~P~~ai~~~~~i~~~-~~-~~~--------~~~l~~~~~~~----~~~~----~~~~~~~~~~~ 375 (396)
|||.+|++|+|+||+++|++++++...+..+ +. +.+ ++.+.++.++. |.+. ..+|||+++.+
T Consensus 321 rdg~lP~~~~~~~~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~ 400 (511)
T 4djk_A 321 QKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLK 400 (511)
T ss_dssp HGGGCSSSCCCCCSSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred cCCcccHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999988444332 22 333 56677776643 2222 23466677888
Q ss_pred Ccccccc
Q 016061 376 SKWWCYY 382 (396)
Q Consensus 376 ~~~~~p~ 382 (396)
||||.|.
T Consensus 401 ~~~~~~~ 407 (511)
T 4djk_A 401 RTFNIPG 407 (511)
T ss_dssp CSCCCSS
T ss_pred CCeecCC
Confidence 9999883
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.11 E-value=1.4e-07 Score=92.81 Aligned_cols=290 Identities=10% Similarity=-0.038 Sum_probs=161.0
Q ss_pred ccCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhh
Q 016061 14 AAKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISS 92 (396)
Q Consensus 14 ~~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~ 92 (396)
-++.+|+.++++.+.+=++.... +.+.+.......-+....+++.+++.++ ........+..+.++ .-......|.
T Consensus 20 vp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li-~~~~~~l~~~~G~~~--Gl~~~v~~R~ 96 (501)
T 2jln_A 20 TRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTI-AVILLFFTQSAAIRW--GINFTVAARM 96 (501)
T ss_dssp CCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHH-HHHHHHHHTHHHHHH--CCCHHHHTTT
T ss_pred CChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHH-HHHHHHHHhHHHhhc--CCChhhhhHh
Confidence 34567889999999888877655 4443333332223444555666666665 222233334444443 1235668888
Q ss_pred hhCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 93 AFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 93 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
.||++.+.+...+..+......+......++.+...+....+..+.++..+++.++...+...|.|...+++.+.....+
T Consensus 97 ~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~ 176 (501)
T 2jln_A 97 PFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLL 176 (501)
T ss_dssp TSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999998888887777777777777766553221111133444556666777789999999999999988888
Q ss_pred HHHHHHHHHHhccccC--CCcccccccc--CChHHHHHH-HHHhhchhhhhhhhhccccCCCcc-----------hHHHH
Q 016061 173 CPFVVMGILSIPRIKP--RRWLVVDFKK--VDWRGYFNS-MFWNLNYWDKASTLAGEVENPSKT-----------FPKAL 236 (396)
Q Consensus 173 ~~~~~~~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~~-~~~~~~G~e~~~~~~~E~k~p~k~-----------~p~ai 236 (396)
+.++.+.+..+...+. .+.......+ ..+...+.. .-+...+.-..+.++.+.|++++. .-++.
T Consensus 177 i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~ 256 (501)
T 2jln_A 177 AMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQ 256 (501)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHHHH
Confidence 7776666655544332 1111111111 123222222 112223335567788888886441 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCccccccHHHHHHHHhchhHH-HHHHH-HHHHHHhHHHHHH-HhhhhhHHHHHH
Q 016061 237 LGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWL-KWWIQ-AASAMSNLGLFEA-EMSGDAFQLLGM 312 (396)
Q Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~s~~~-~~~~~sR~l~~~ 312 (396)
..+..+...+..+........ ....+|...+.+...++.. ..+.. +.++++.+++... ...+.+-.+.++
T Consensus 257 ~lG~~i~~~~~~~lG~~~~~~------~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 257 WLGMVPASIIFGFIGAASMVL------VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh------ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 444444433333333322221 1223455555553433332 55555 6666666666553 566655555444
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.15 E-value=0.00015 Score=72.76 Aligned_cols=280 Identities=12% Similarity=-0.039 Sum_probs=136.4
Q ss_pred CCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhhC
Q 016061 18 SPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFG 95 (396)
Q Consensus 18 ~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~g 95 (396)
.|+++++....-..+..++ ..++.++...+ .|.....+.|. ..+. .+..++.+...-++. +.-..++|.++=||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~-~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHH-HHHHHHTHHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHH-HHHHHHHHHHHHHhC-CCCCcHHHHHHHcc
Confidence 4788877655555555555 34577776666 45321112221 1111 222344444444443 34479999999999
Q ss_pred ChhHHHHHHHHHHHHh-hhHhHHHHHHHHHHHHhchhhhhhhhHHHHH-HHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Q 016061 96 PFWGFQEGFWKWLSGV-LDNALYPVLFLDYLKHSLPIFNLLIARIPAL-LGITGALTYLNYRGLHIVGFSAVSLLVFSLC 173 (396)
Q Consensus 96 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~ 173 (396)
++...+.+....+.+. ...+......+..++..++. +.+... +...+...+....|.|...+...+=..++++
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi-----~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~ 198 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI-----PLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVL 198 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----cHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9988888776665444 33444555555566666552 222221 2222334556667888765554444444444
Q ss_pred HHHHHHHHHhcccc----------------CCCcccccccc-------CChHHHHH---HHHHhhchhh-hhhhhhcccc
Q 016061 174 PFVVMGILSIPRIK----------------PRRWLVVDFKK-------VDWRGYFN---SMFWNLNYWD-KASTLAGEVE 226 (396)
Q Consensus 174 ~~~~~~i~~~~~~~----------------~~~~~~~~~~~-------~~~~~~~~---~~~~~~~G~e-~~~~~~~E~k 226 (396)
..+++.+.++...+ ++++.....++ ..|...+. .....+.|.+ ...+-.-+.|
T Consensus 199 ~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~~~qR~laak 278 (593)
T 2xq2_A 199 GGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAK 278 (593)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChHHHHHhheeC
Confidence 33333322221110 11111110000 11222211 1112233333 2233444678
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHH---HHhc-cC--------------CCCccccccHHHHHHHHhchhHHHHHHHH
Q 016061 227 NPSKTFPKALLGAVVLVVSSYLIPLLA---GTGG-LT--------------SLSSEWSDGYFAEVGMLIGGFWLKWWIQA 288 (396)
Q Consensus 227 ~p~k~~p~ai~~~~~~~~~~y~~~~~~---~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (396)
|+ |+..|+.+.+.....+..++.... .... .+ .++..+.+..+..+. +..+++..-++..
T Consensus 279 s~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l~gl~~a 356 (593)
T 2xq2_A 279 SV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGVKGVVFA 356 (593)
T ss_dssp CH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhHHHHHHH
Confidence 85 888899888776655444432211 1111 00 112333455566666 6777877777777
Q ss_pred HHHHHhHHHHHHHhhhhhHH
Q 016061 289 ASAMSNLGLFEAEMSGDAFQ 308 (396)
Q Consensus 289 ~~~~~~~~s~~~~~~~~sR~ 308 (396)
.++.+..++..+.+++.+-.
T Consensus 357 ~llaA~mST~~s~l~a~st~ 376 (593)
T 2xq2_A 357 ALAAAIVSSLASMLNSTATI 376 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776665
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.93 E-value=0.0012 Score=65.32 Aligned_cols=286 Identities=12% Similarity=-0.027 Sum_probs=137.3
Q ss_pred CCCcccchhHHHHHHhhhcc--cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhh
Q 016061 17 TSPKLTVLPLIALIFYEVSG--GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF 94 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G--g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~ 94 (396)
-.|+++++....-..++.++ ...+.++.... .|.....+.|.. .+. .+..+..+...-++. +.-..++|.++-|
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~~-~~~-~~i~~~~~~p~~~~~-~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWMS-AIT-LIIVGKYFLPIFIEK-GIYTIPEFVEKRF 93 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHHH-HHH-HHHHHHHTHHHHHHT-TCCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHH-HHH-HHHHHHHHHHHHHHc-CCccHHHHHHHHc
Confidence 45889988887776666666 35677777666 454221122221 111 222344444444443 3457999999999
Q ss_pred CChhHHHHHHHHHHHHhh-hHhHHHHHHHHHHHHhchhhhhhhhHHHHHH-HHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Q 016061 95 GPFWGFQEGFWKWLSGVL-DNALYPVLFLDYLKHSLPIFNLLIARIPALL-GITGALTYLNYRGLHIVGFSAVSLLVFSL 172 (396)
Q Consensus 95 g~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~i 172 (396)
|++...+.+....+.+.. ..+......+..++..++ .+.+...+ ...+...+....|.|...+...+=..+.+
T Consensus 94 g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-----i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~ 168 (530)
T 3dh4_A 94 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-----IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLV 168 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 999888887766654443 334444444555666665 22222111 22222334445677765554444444444
Q ss_pred HHHHHHHHHHhccc----------------cCCCcccc---ccc----cCChHHHHHHH---HHhhchhh-hhhhhhccc
Q 016061 173 CPFVVMGILSIPRI----------------KPRRWLVV---DFK----KVDWRGYFNSM---FWNLNYWD-KASTLAGEV 225 (396)
Q Consensus 173 ~~~~~~~i~~~~~~----------------~~~~~~~~---~~~----~~~~~~~~~~~---~~~~~G~e-~~~~~~~E~ 225 (396)
+..+++.+.++... +++++... ..+ ..++...+... -..|.|.+ ...+-.-..
T Consensus 169 ~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~laa 248 (530)
T 3dh4_A 169 LGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAA 248 (530)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33333222222110 11111110 000 01122111111 11233322 122222345
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHH---HHHHHhccCC---------------CCccccccHHHHHHHHhchhHHHHHHH
Q 016061 226 ENPSKTFPKALLGAVVLVVSSYLIP---LLAGTGGLTS---------------LSSEWSDGYFAEVGMLIGGFWLKWWIQ 287 (396)
Q Consensus 226 k~p~k~~p~ai~~~~~~~~~~y~~~---~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (396)
||+ |+..|+.+.+........++. .++.....+. ++..+.+..+..+.+ ..+++..-++.
T Consensus 249 ks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~lp~~l~Gl~~ 326 (530)
T 3dh4_A 249 KSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-FLPVGVKGVVF 326 (530)
T ss_dssp SCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-TCCTTHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-HcchhHHHHHH
Confidence 775 778888887766544332221 1111111110 123445666777776 77777777777
Q ss_pred HHHHHHhHHHHHHHhhhhhHHHHHHhhcC
Q 016061 288 AASAMSNLGLFEAEMSGDAFQLLGMSEMG 316 (396)
Q Consensus 288 ~~~~~~~~~s~~~~~~~~sR~l~~~a~dg 316 (396)
..++.+.+++..+.+++.+-. .++|=
T Consensus 327 a~llAA~mST~ss~l~s~st~---~~~Di 352 (530)
T 3dh4_A 327 AALAAAIVSSLASMLNSTATI---FTMDI 352 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHhHH
Confidence 777777777777777777666 35553
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.41 E-value=0.1 Score=50.90 Aligned_cols=105 Identities=16% Similarity=0.038 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhh-hHHHHHhHHHHHHHHHHHHHHHHHHhccccCC---------Ccccccc---ccCChHHHHHHHH
Q 016061 143 LGITGALTYLNYRGL-HIVGFSAVSLLVFSLCPFVVMGILSIPRIKPR---------RWLVVDF---KKVDWRGYFNSMF 209 (396)
Q Consensus 143 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~~ 209 (396)
++..++...+..+|+ |...|...++...-.+.++++.+-++...++. -+.|... ++.-|..+...++
T Consensus 173 ~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~F 252 (519)
T 2a65_A 173 LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIF 252 (519)
T ss_dssp HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHH
Confidence 344455566677899 77899999988887777777766655433310 0111110 1123666777888
Q ss_pred Hhh-chhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHH
Q 016061 210 WNL-NYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL 248 (396)
Q Consensus 210 ~~~-~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~ 248 (396)
|+. .|+.....+++-.|+ +.|++|........-...-+
T Consensus 253 FSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sl 291 (519)
T 2a65_A 253 FTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEV 291 (519)
T ss_dssp HHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHH
Confidence 888 599999999988877 57788876666655554444
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=67.92 E-value=91 Score=30.20 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=18.3
Q ss_pred CCCCcccchhHHHHHHhhhcc-cc
Q 016061 16 KTSPKLTVLPLIALIFYEVSG-GP 38 (396)
Q Consensus 16 ~~~r~l~~~~~~~l~~~~~~G-g~ 38 (396)
+.|.+.|.++-++|.++.-+| |+
T Consensus 91 d~kPefS~~sW~aMlF~AGmGiGl 114 (539)
T 4ain_A 91 DEAPEFRTVSWISMMFAAGMGIGL 114 (539)
T ss_dssp TCCCSSCHHHHHHHHHTTSCCTHH
T ss_pred CCCCCCcchHHHHHHHHHhhcchh
Confidence 356778999999999988777 53
No 9
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=33.15 E-value=11 Score=19.89 Aligned_cols=8 Identities=50% Similarity=1.423 Sum_probs=5.9
Q ss_pred hcccccCC
Q 016061 389 SCSSSCKG 396 (396)
Q Consensus 389 ~~~~~~~~ 396 (396)
.|++||||
T Consensus 7 tcpsgcsg 14 (31)
T 2hm3_A 7 TCPSGCSG 14 (31)
T ss_dssp CCCTTCCG
T ss_pred cCCCCcCc
Confidence 47788875
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=24.91 E-value=4.6e+02 Score=25.08 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=17.8
Q ss_pred CCCcccchhHHHHHHhhhcc-cc
Q 016061 17 TSPKLTVLPLIALIFYEVSG-GP 38 (396)
Q Consensus 17 ~~r~l~~~~~~~l~~~~~~G-g~ 38 (396)
.|.+.|.++-++|.++.=+| |+
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl 109 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAV 109 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHH
Confidence 56678999999998888777 63
No 11
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=22.23 E-value=5e+02 Score=24.60 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 016061 55 LLGFLIFPLIWSIPEALITAELATSFP 81 (396)
Q Consensus 55 ~~~~~i~~l~~~l~~a~~~~el~~~~p 81 (396)
+++-+++.+. ....+..=.+.+..+|
T Consensus 66 ~lG~li~~~~-~~l~~~~G~~~Gl~~~ 91 (501)
T 2jln_A 66 AAGCTIAVIL-LFFTQSAAIRWGINFT 91 (501)
T ss_dssp HHHHHHHHHH-HHHHTHHHHHHCCCHH
T ss_pred HHHHHHHHHH-HHHHhHHHhhcCCChh
Confidence 3455555444 4444555555555444
Done!