BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016062
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/407 (32%), Positives = 188/407 (46%), Gaps = 40/407 (9%)
Query: 1 MEKQGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN--------SPHA- 51
M +R VV++P P+QGHI P+ +L +LH RGF IT + ++N P A
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAF 60
Query: 52 SNHPDFTFLPLSDGSSSTPKASD---DFIDFMSNINLNCRAPLQEALTRMIAKQEDLP-- 106
DF F + DG + D D ++ N P E LTR+ P
Sbjct: 61 DGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVT 120
Query: 107 CVIHDGIMHCAEAVARHLKLPSIIXXXXXXXXXXXXXXXPRLLEQGHIPFPDSKLL---- 162
C++ D M A +LP+++ +E+G IPF D L
Sbjct: 121 CLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGC 180
Query: 163 -----ELVPGLDPLRFKDLP---ASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQS 214
+ +PGL R KD+ ++ N L F + + + I+LNT LE
Sbjct: 181 LETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESD 240
Query: 215 SIVQFQEQYPVPIFSIGPM----------HLAAPASSCSLLKEDTSCIEWLDKQTQHSVI 264
I P I+ IGP+ H S +L KEDT C++WL+ + SV+
Sbjct: 241 VINALSSTIP-SIYPIGPLPSLLKQTPQIHQLDSLDS-NLWKEDTECLDWLESKEPGSVV 298
Query: 265 YVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGC 324
YV+FGS + ++L E AWGLAN K+ FLW++RP G + + F + RG
Sbjct: 299 YVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG--GSVIFSSEFTNEIADRGL 356
Query: 325 IVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQ 371
I +W PQ +VL H ++GGF THCGWNS ESI GVPM+C F DQ
Sbjct: 357 IASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQ 403
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 129/224 (57%), Gaps = 19/224 (8%)
Query: 158 DSKLLELVPGLDPLRFKDLPAS-SFGNLSTLLPFTAILRDIG----SSSAIILNTNECLE 212
+ +LL +PG+ +RF+DL FGNL++L F+ +L +G ++A+ +N+ E L+
Sbjct: 169 EDELLNFIPGMSKVRFRDLQEGIVFGNLNSL--FSRMLHRMGQVLPKATAVFINSFEELD 226
Query: 213 QSSIVQFQEQYPVPIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIA 272
S + + +IGP +L P ++ T C++WL ++ SV+Y+SFG++
Sbjct: 227 DSLTNDLKSKLKT-YLNIGPFNLITPPP---VVPNTTGCLQWLKERKPTSVVYISFGTVT 282
Query: 273 LTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDL-LPDSFKETVEKRGCIVNWAPQ 331
E+ ++ L S+ PF+W LR D + LP+ F E G +V WAPQ
Sbjct: 283 TPPPAEVVALSEALEASRVPFIWSLR-------DKARVHLPEGFLEKTRGYGMVVPWAPQ 335
Query: 332 RQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNA 375
+VLAH AVG F THCGWNS+ ES++ GVP+ICR FGDQ++N
Sbjct: 336 AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNG 379
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 120/397 (30%), Positives = 178/397 (44%), Gaps = 36/397 (9%)
Query: 7 RCRQVVLVPIPLQGHITPMLQLGT-ILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDG 65
+ V ++P P GH+ P+++ ++H G ++T A P + LP S
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSIS 64
Query: 66 SSSTPKASDDFIDFMSNINLNCR---------APLQEALTRMIAKQEDLPCVIHDGIMHC 116
S P D D S+ + R L++ + ++ D
Sbjct: 65 SVFLPPV--DLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTD 122
Query: 117 AEAVARHLKLPSIIXXXXXXXXXXXXXXXPRLLEQGHIPFPDSKLLELVPGLDPLRFKDL 176
A VA +P I P+L E F + ++PG P+ KD
Sbjct: 123 AFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKDF 182
Query: 177 --PASSFGN--LSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQE---QYPVPIFS 229
PA + LL T ++ + I++NT LE ++I QE P P++
Sbjct: 183 LDPAQDRKDDAYKWLLHNTKRYKE---AEGILVNTFFELEPNAIKALQEPGLDKP-PVYP 238
Query: 230 IGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS 289
+GP L + E++ C++WLD Q SV+YVSFGS ++L E+A GLA+S
Sbjct: 239 VGP--LVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADS 296
Query: 290 KQPFLWVLRPGSA----------DGLDPTDLLPDSFKETVEKRGCIVN-WAPQRQVLAHS 338
+Q FLWV+R S DP LP F E +KRG ++ WAPQ QVLAH
Sbjct: 297 EQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHP 356
Query: 339 AVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNA 375
+ GGF THCGWNS LES+ G+P+I + +QK+NA
Sbjct: 357 STGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNA 393
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 16/222 (7%)
Query: 158 DSKLLELVPGLDPLRFKDLPASSFGNLSTLLPFTAILRDIG----SSSAIILNTNECLEQ 213
D K ++++PG L+ DLP ++ +PF +L +G ++A+ +N+ +
Sbjct: 172 DVKSIDVLPGFPELKASDLPEGVIKDID--VPFATMLHKMGLELPRANAVAINSFATIHP 229
Query: 214 SSIVQFQEQYPVPIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIAL 273
+ ++ + + ++GP +L P S ++ C+EWLD+ SV+Y+SFGS+
Sbjct: 230 LIENELNSKFKL-LLNVGPFNLTTPQRKVS---DEHGCLEWLDQHENSSVVYISFGSVVT 285
Query: 274 TGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQ 333
EL +A L PF+W R DP + LP F E + +G IV WAPQ +
Sbjct: 286 PPPHELTALAESLEECGFPFIWSFRG------DPKEKLPKGFLERTKTKGKIVAWAPQVE 339
Query: 334 VLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNA 375
+L HS+VG F TH GWNS+LE I GVPMI R FGDQ +N
Sbjct: 340 ILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNT 381
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 17/210 (8%)
Query: 176 LPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSI---VQFQEQYPVPIFSIGP 232
LP + F + + + + II+NT LEQSSI E+ P PI+++GP
Sbjct: 188 LPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIP-PIYAVGP 246
Query: 233 MH--LAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALT-GEKELAEMAWGLANS 289
+ P + D ++WLD+Q SV+++ FGS+ ++ G ++ E+A GL +S
Sbjct: 247 LLDLKGQPNPKLDQAQHDL-ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHS 305
Query: 290 KQPFLWVLRPGSADGLDPTDLLPDSFKE--TVEKRGCIVNWAPQRQVLAHSAVGGFWTHC 347
FLW SA+ + P+ F E +E +G I WAPQ +VLAH A+GGF +HC
Sbjct: 306 GVRFLW---SNSAE----KKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHC 358
Query: 348 GWNSILESISEGVPMICRSAFGDQKVNASR 377
GWNSILES+ GVP++ + +Q++NA R
Sbjct: 359 GWNSILESMWFGVPILTWPIYAEQQLNAFR 388
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 116/210 (55%), Gaps = 17/210 (8%)
Query: 176 LPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSI---VQFQEQYPVPIFSIGP 232
LP + F + + + + II+NT LEQSSI E+ P PI+++GP
Sbjct: 188 LPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIP-PIYAVGP 246
Query: 233 MH--LAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALT-GEKELAEMAWGLANS 289
+ P + D ++WLD+Q SV+++ FGS+ ++ G ++ E+A GL +S
Sbjct: 247 LLDLKGQPNPKLDQAQHDL-ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHS 305
Query: 290 KQPFLWVLRPGSADGLDPTDLLPDSFKE--TVEKRGCIVNWAPQRQVLAHSAVGGFWTHC 347
FLW SA+ + P+ F E +E +G I WAPQ +VLAH A+GGF +HC
Sbjct: 306 GVRFLW---SNSAE----KKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHC 358
Query: 348 GWNSILESISEGVPMICRSAFGDQKVNASR 377
GWNSILES+ GVP++ + +Q++NA R
Sbjct: 359 GWNSILESMWFGVPILTWPIYAEQQLNAFR 388
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 253 EWLDKQTQHSVIYVSFGSIALTGEKELAE-MAWGLANSKQPFLWVLRPGSADGLDPTDLL 311
+++ ++ V+ S GS +E A +A LA Q LW DG P
Sbjct: 13 DFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF-----DGNKP---- 63
Query: 312 PDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQ 371
+T+ + W PQ +L H F TH G N I E+I G+P + F DQ
Sbjct: 64 -----DTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
Query: 372 KVN 374
N
Sbjct: 119 PDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 327 NWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNASR 377
W PQ +L ++ F TH G S +E++S VPM+ +Q +NA R
Sbjct: 311 QWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAER 359
>pdb|3EY8|A Chain A, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
pdb|3EY8|B Chain B, Structure From The Mobile Metagenome Of V. Pseudocholerae.
Vpc_cass1
Length = 133
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 266 VSFGS--IALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRG 323
VSFGS IAL + + L + +P +R GSAD TD+ E VE +G
Sbjct: 37 VSFGSGRIALEFGHQKINLHQ-LGHEFEPKAQNVRTGSADLCFITDIDLSDAXEYVENQG 95
Query: 324 CIVNWAPQRQVLAHSAVGGFW 344
++ P ++ A A+ F+
Sbjct: 96 VVIXEGPVKRTGAQGAITSFY 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,441,315
Number of Sequences: 62578
Number of extensions: 440917
Number of successful extensions: 855
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 833
Number of HSP's gapped (non-prelim): 10
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)