Query 016062
Match_columns 396
No_of_seqs 128 out of 1156
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 7E-61 1.5E-65 445.6 39.4 391 1-394 1-408 (451)
2 PLN02562 UDP-glycosyltransfera 100.0 6.8E-59 1.5E-63 433.6 36.9 381 4-394 3-411 (448)
3 PLN02670 transferase, transfer 100.0 1.3E-57 2.7E-62 423.7 34.8 384 4-394 3-427 (472)
4 PLN02555 limonoid glucosyltran 100.0 4.8E-57 1E-61 421.2 36.8 381 8-394 7-427 (480)
5 PLN03004 UDP-glycosyltransfera 100.0 1.5E-56 3.3E-61 414.7 37.1 385 9-395 4-423 (451)
6 PLN02173 UDP-glucosyl transfer 100.0 1.5E-56 3.3E-61 414.5 36.5 368 8-395 5-407 (449)
7 PLN02992 coniferyl-alcohol glu 100.0 3.8E-56 8.2E-61 414.1 35.7 377 8-395 5-426 (481)
8 PLN02448 UDP-glycosyltransfera 100.0 4E-56 8.7E-61 418.3 35.1 374 8-395 10-414 (459)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.5E-56 1.2E-60 415.7 35.4 383 8-394 9-431 (477)
10 PLN02207 UDP-glycosyltransfera 100.0 1.8E-55 4E-60 408.8 37.7 382 8-394 3-424 (468)
11 PLN02152 indole-3-acetate beta 100.0 1E-55 2.2E-60 409.7 35.6 375 8-395 3-416 (455)
12 PLN02210 UDP-glucosyl transfer 100.0 1.3E-55 2.9E-60 411.9 35.8 377 1-394 1-413 (456)
13 PLN00414 glycosyltransferase f 100.0 1.3E-55 2.8E-60 409.8 34.4 372 4-395 1-401 (446)
14 PLN02208 glycosyltransferase f 100.0 1.1E-55 2.3E-60 409.9 33.8 363 8-395 4-400 (442)
15 PLN02764 glycosyltransferase f 100.0 3.3E-55 7.1E-60 404.2 34.8 369 4-395 1-406 (453)
16 PLN02554 UDP-glycosyltransfera 100.0 7.9E-55 1.7E-59 410.9 35.5 380 8-395 2-439 (481)
17 PLN03007 UDP-glucosyltransfera 100.0 1.3E-54 2.9E-59 410.0 36.6 385 4-395 1-439 (482)
18 PLN00164 glucosyltransferase; 100.0 3.7E-54 7.9E-59 404.8 37.0 381 8-395 3-430 (480)
19 PLN03015 UDP-glucosyl transfer 100.0 6.4E-54 1.4E-58 396.8 35.9 378 9-394 4-424 (470)
20 PLN02167 UDP-glycosyltransfera 100.0 1.7E-53 3.6E-58 401.3 36.3 385 8-395 3-433 (475)
21 PLN02534 UDP-glycosyltransfera 100.0 1.4E-53 3E-58 398.6 33.9 381 8-394 8-442 (491)
22 PHA03392 egt ecdysteroid UDP-g 100.0 9.6E-50 2.1E-54 377.4 17.9 363 8-395 20-431 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.3E-51 2.7E-56 397.3 -11.8 357 10-395 2-408 (500)
24 cd03784 GT1_Gtf_like This fami 100.0 1.9E-40 4.1E-45 311.4 20.6 338 9-395 1-371 (401)
25 TIGR01426 MGT glycosyltransfer 100.0 9.3E-40 2E-44 305.2 21.1 334 14-395 1-358 (392)
26 KOG1192 UDP-glucuronosyl and U 100.0 6E-40 1.3E-44 316.3 12.8 348 8-376 5-391 (496)
27 COG1819 Glycosyl transferases, 100.0 1E-36 2.2E-41 281.2 12.5 344 8-395 1-367 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 6.6E-23 1.4E-27 186.5 23.5 294 9-393 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 3.3E-22 7E-27 182.6 24.7 297 10-395 3-324 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 3.8E-20 8.3E-25 167.9 21.9 278 10-376 1-286 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.8 1.5E-18 3.3E-23 156.5 22.9 295 9-395 1-323 (357)
32 COG4671 Predicted glycosyl tra 99.7 3.3E-15 7.2E-20 128.7 21.6 323 8-394 9-363 (400)
33 cd03785 GT1_MurG MurG is an N- 99.7 9.3E-15 2E-19 134.9 22.1 301 10-395 1-323 (350)
34 TIGR03590 PseG pseudaminic aci 99.7 5.7E-15 1.2E-19 130.7 18.0 103 261-376 170-277 (279)
35 PRK00726 murG undecaprenyldiph 99.7 1.7E-14 3.8E-19 133.4 22.0 299 9-395 2-323 (357)
36 TIGR01133 murG undecaprenyldip 99.5 2.4E-12 5.3E-17 118.7 23.9 296 9-395 1-320 (348)
37 TIGR00215 lpxB lipid-A-disacch 99.5 3.1E-12 6.7E-17 118.8 18.7 304 9-395 6-346 (385)
38 PRK13609 diacylglycerol glucos 99.4 2.5E-12 5.5E-17 120.0 13.3 124 259-394 200-336 (380)
39 PF03033 Glyco_transf_28: Glyc 99.4 1E-14 2.2E-19 115.7 -2.4 123 11-136 1-132 (139)
40 PRK00025 lpxB lipid-A-disaccha 99.3 7.4E-11 1.6E-15 110.2 17.5 298 9-395 2-340 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.3 4.5E-14 9.8E-19 115.6 -5.0 124 263-395 1-143 (167)
42 PRK13608 diacylglycerol glucos 99.2 1.6E-09 3.5E-14 101.2 16.7 125 259-395 200-337 (391)
43 PLN02605 monogalactosyldiacylg 99.1 5.1E-09 1.1E-13 97.7 18.0 73 321-395 265-346 (382)
44 cd03814 GT1_like_2 This family 99.1 1.3E-07 2.8E-12 87.3 27.1 118 262-394 197-330 (364)
45 cd03794 GT1_wbuB_like This fam 99.0 1.8E-07 3.8E-12 87.1 23.7 317 10-394 1-363 (394)
46 PLN02871 UDP-sulfoquinovose:DA 99.0 4.5E-07 9.7E-12 87.0 26.4 118 263-394 264-398 (465)
47 TIGR03492 conserved hypothetic 99.0 1.3E-07 2.8E-12 88.2 21.9 313 16-394 4-362 (396)
48 cd03823 GT1_ExpE7_like This fa 98.9 8.1E-07 1.8E-11 81.7 25.3 123 261-395 190-328 (359)
49 COG3980 spsG Spore coat polysa 98.9 1.1E-07 2.3E-12 80.5 17.0 103 261-376 158-263 (318)
50 cd03818 GT1_ExpC_like This fam 98.8 1.1E-05 2.5E-10 75.7 29.5 117 10-134 1-118 (396)
51 cd03800 GT1_Sucrose_synthase T 98.8 3.2E-06 7E-11 79.3 24.8 74 320-395 282-367 (398)
52 cd03817 GT1_UGDG_like This fam 98.8 5.9E-06 1.3E-10 76.3 26.1 47 320-368 258-311 (374)
53 PF04007 DUF354: Protein of un 98.8 8.7E-07 1.9E-11 79.6 18.9 110 10-134 2-112 (335)
54 cd04962 GT1_like_5 This family 98.8 5.1E-06 1.1E-10 77.2 24.8 73 320-394 252-334 (371)
55 cd03801 GT1_YqgM_like This fam 98.8 4.1E-06 8.8E-11 77.0 24.0 296 19-394 14-339 (374)
56 cd03808 GT1_cap1E_like This fa 98.8 1.3E-05 2.8E-10 73.5 27.3 303 10-394 1-327 (359)
57 cd03816 GT1_ALG1_like This fam 98.7 1.8E-05 3.9E-10 74.7 26.1 121 8-134 3-130 (415)
58 cd03786 GT1_UDP-GlcNAc_2-Epime 98.7 1.2E-06 2.6E-11 81.3 17.3 128 260-395 197-336 (363)
59 PRK10307 putative glycosyl tra 98.7 2.3E-05 5E-10 74.0 26.0 122 261-394 228-371 (412)
60 TIGR03449 mycothiol_MshA UDP-N 98.6 2.3E-05 4.9E-10 73.9 24.5 109 19-134 20-133 (405)
61 cd03825 GT1_wcfI_like This fam 98.6 1.3E-05 2.7E-10 74.3 21.4 74 319-394 242-328 (365)
62 cd03798 GT1_wlbH_like This fam 98.6 5.5E-05 1.2E-09 69.7 25.7 74 320-395 258-343 (377)
63 cd03796 GT1_PIG-A_like This fa 98.6 3.4E-05 7.3E-10 72.6 23.6 111 11-134 2-122 (398)
64 cd03795 GT1_like_4 This family 98.6 4.8E-05 1E-09 70.1 24.1 122 262-395 191-331 (357)
65 cd03820 GT1_amsD_like This fam 98.5 0.00016 3.5E-09 65.8 26.4 74 320-395 234-318 (348)
66 cd03805 GT1_ALG2_like This fam 98.5 7.5E-05 1.6E-09 70.0 24.0 72 320-394 279-362 (392)
67 PLN02846 digalactosyldiacylgly 98.5 5.2E-05 1.1E-09 71.4 21.4 112 267-394 233-361 (462)
68 cd03821 GT1_Bme6_like This fam 98.5 0.00023 5E-09 65.6 26.1 74 320-395 261-344 (375)
69 PLN02275 transferase, transfer 98.5 0.00017 3.6E-09 67.2 24.9 123 8-134 4-135 (371)
70 cd03819 GT1_WavL_like This fam 98.5 7.2E-05 1.6E-09 69.0 22.3 98 20-134 11-110 (355)
71 cd03822 GT1_ecORF704_like This 98.4 0.0002 4.4E-09 66.0 24.6 75 319-395 245-333 (366)
72 cd04955 GT1_like_6 This family 98.4 8.3E-05 1.8E-09 68.7 21.9 94 265-368 196-301 (363)
73 cd03811 GT1_WabH_like This fam 98.4 0.00013 2.9E-09 66.5 22.6 94 261-368 188-296 (353)
74 cd03799 GT1_amsK_like This is 98.4 0.00022 4.7E-09 65.7 23.5 73 320-394 235-325 (355)
75 cd03802 GT1_AviGT4_like This f 98.4 2.8E-05 6.1E-10 71.0 17.2 121 264-394 173-306 (335)
76 PRK05749 3-deoxy-D-manno-octul 98.3 3.7E-05 8.1E-10 72.9 18.0 97 10-132 51-154 (425)
77 KOG3349 Predicted glycosyltran 98.3 1.7E-06 3.6E-11 65.9 6.3 99 262-367 4-108 (170)
78 cd05844 GT1_like_7 Glycosyltra 98.3 0.00021 4.5E-09 66.2 21.7 75 319-395 243-335 (367)
79 TIGR02468 sucrsPsyn_pln sucros 98.3 0.00048 1E-08 70.4 24.7 116 20-135 196-343 (1050)
80 TIGR02472 sucr_P_syn_N sucrose 98.2 0.001 2.2E-08 63.5 25.0 107 20-134 27-146 (439)
81 cd04951 GT1_WbdM_like This fam 98.2 0.0012 2.6E-08 60.9 24.5 73 320-394 244-324 (360)
82 cd03807 GT1_WbnK_like This fam 98.1 0.0026 5.6E-08 58.3 24.4 74 320-395 250-331 (365)
83 TIGR03568 NeuC_NnaA UDP-N-acet 98.1 0.0005 1.1E-08 63.6 18.9 128 260-394 200-337 (365)
84 TIGR00236 wecB UDP-N-acetylglu 98.0 0.00018 3.9E-09 66.8 14.5 122 261-394 197-332 (365)
85 cd03812 GT1_CapH_like This fam 98.0 0.0061 1.3E-07 56.1 24.3 74 320-395 248-330 (358)
86 PRK09922 UDP-D-galactose:(gluc 98.0 0.001 2.2E-08 61.6 18.8 123 262-395 180-323 (359)
87 cd03809 GT1_mtfB_like This fam 97.9 0.0011 2.3E-08 61.2 18.5 74 319-394 251-334 (365)
88 cd03804 GT1_wbaZ_like This fam 97.9 0.0011 2.4E-08 61.1 18.2 119 265-395 198-325 (351)
89 PF02350 Epimerase_2: UDP-N-ac 97.9 4.3E-05 9.4E-10 69.9 8.1 125 259-395 178-317 (346)
90 TIGR02149 glgA_Coryne glycogen 97.9 0.0097 2.1E-07 55.6 24.0 95 263-367 202-312 (388)
91 PRK14089 ipid-A-disaccharide s 97.9 0.0013 2.9E-08 59.8 17.2 125 224-376 143-272 (347)
92 PRK01021 lpxB lipid-A-disaccha 97.8 0.0022 4.8E-08 61.7 18.7 274 9-365 227-513 (608)
93 COG5017 Uncharacterized conser 97.7 0.0001 2.2E-09 55.3 6.4 88 264-369 2-95 (161)
94 TIGR03087 stp1 sugar transfera 97.7 0.0016 3.5E-08 61.2 16.1 73 320-395 279-361 (397)
95 PF02684 LpxB: Lipid-A-disacch 97.7 0.003 6.6E-08 57.9 16.3 125 224-365 152-285 (373)
96 PRK15427 colanic acid biosynth 97.6 0.051 1.1E-06 51.2 24.1 74 320-395 278-369 (406)
97 cd03806 GT1_ALG11_like This fa 97.6 0.0054 1.2E-07 58.0 17.6 72 320-395 304-391 (419)
98 cd04950 GT1_like_1 Glycosyltra 97.5 0.037 8E-07 51.6 21.5 74 320-394 253-338 (373)
99 TIGR03088 stp2 sugar transfera 97.5 0.068 1.5E-06 49.7 23.3 72 321-394 255-336 (374)
100 cd01635 Glycosyltransferase_GT 97.4 0.027 5.9E-07 47.8 18.5 49 320-370 160-216 (229)
101 cd03791 GT1_Glycogen_synthase_ 97.4 0.037 8.1E-07 53.4 21.0 120 263-394 297-440 (476)
102 PRK15179 Vi polysaccharide bio 97.4 0.14 3.1E-06 51.3 24.6 46 320-367 573-623 (694)
103 cd03792 GT1_Trehalose_phosphor 97.4 0.022 4.8E-07 53.0 18.1 46 320-367 251-305 (372)
104 PF06722 DUF1205: Protein of u 97.4 0.00022 4.8E-09 51.6 3.7 61 251-314 30-95 (97)
105 PLN02501 digalactosyldiacylgly 97.3 0.21 4.6E-06 49.3 24.7 116 262-395 548-680 (794)
106 PLN02949 transferase, transfer 97.3 0.13 2.8E-06 49.2 22.3 72 320-395 334-421 (463)
107 COG0381 WecB UDP-N-acetylgluco 97.2 0.057 1.2E-06 49.0 18.3 312 12-395 6-340 (383)
108 PF13477 Glyco_trans_4_2: Glyc 97.2 0.0067 1.5E-07 47.5 10.6 104 10-134 1-108 (139)
109 PF13844 Glyco_transf_41: Glyc 97.1 0.0013 2.7E-08 61.7 6.4 99 259-367 282-392 (468)
110 COG1817 Uncharacterized protei 96.9 0.17 3.8E-06 44.3 17.2 102 20-135 11-114 (346)
111 PRK10125 putative glycosyl tra 96.8 0.39 8.4E-06 45.2 20.5 87 266-369 245-340 (405)
112 COG1519 KdtA 3-deoxy-D-manno-o 96.7 0.28 6.1E-06 45.1 18.3 274 11-376 51-359 (419)
113 COG0763 LpxB Lipid A disacchar 96.7 0.055 1.2E-06 49.0 13.2 274 9-365 2-289 (381)
114 PF13692 Glyco_trans_1_4: Glyc 96.6 0.0075 1.6E-07 46.9 6.8 75 320-395 52-134 (135)
115 PLN02316 synthase/transferase 96.6 0.37 8E-06 50.2 19.8 40 8-47 587-632 (1036)
116 PF06258 Mito_fiss_Elm1: Mitoc 96.6 0.066 1.4E-06 48.1 13.1 39 330-369 221-259 (311)
117 cd04949 GT1_gtfA_like This fam 96.5 0.27 5.8E-06 45.6 17.4 76 320-395 260-344 (372)
118 PF12000 Glyco_trans_4_3: Gkyc 96.3 0.065 1.4E-06 43.3 10.5 92 34-133 1-96 (171)
119 TIGR02918 accessory Sec system 96.2 0.18 4E-06 48.8 14.8 91 263-367 320-424 (500)
120 TIGR02193 heptsyl_trn_I lipopo 96.2 0.39 8.5E-06 43.6 16.1 109 10-131 1-112 (319)
121 PF13579 Glyco_trans_4_4: Glyc 96.0 0.014 3.1E-07 46.5 5.6 97 24-134 6-105 (160)
122 cd03789 GT1_LPS_heptosyltransf 95.8 1.1 2.4E-05 39.7 17.0 102 10-130 1-105 (279)
123 TIGR02201 heptsyl_trn_III lipo 95.6 0.75 1.6E-05 42.3 15.8 105 10-130 1-108 (344)
124 cd03813 GT1_like_3 This family 95.6 0.78 1.7E-05 44.3 16.5 74 320-395 353-441 (475)
125 TIGR02470 sucr_synth sucrose s 95.6 0.21 4.5E-06 50.5 12.5 121 8-135 255-418 (784)
126 PLN00142 sucrose synthase 95.4 0.11 2.3E-06 52.6 9.9 102 27-135 319-441 (815)
127 PRK00654 glgA glycogen synthas 95.4 0.16 3.5E-06 48.8 10.9 124 262-394 282-426 (466)
128 PRK15484 lipopolysaccharide 1, 95.3 0.2 4.3E-06 46.8 10.8 76 318-395 254-343 (380)
129 PF00534 Glycos_transf_1: Glyc 95.3 0.14 3.1E-06 41.5 8.8 75 319-395 71-157 (172)
130 COG3914 Spy Predicted O-linked 95.0 0.14 3.1E-06 48.6 8.7 104 259-372 427-542 (620)
131 cd04946 GT1_AmsK_like This fam 95.0 0.28 6.1E-06 46.2 11.1 123 262-394 230-375 (407)
132 KOG4626 O-linked N-acetylgluco 95.0 0.074 1.6E-06 50.9 6.7 108 259-375 756-874 (966)
133 PF13439 Glyco_transf_4: Glyco 94.9 0.37 8.1E-06 38.8 10.4 99 20-136 13-112 (177)
134 TIGR02095 glgA glycogen/starch 94.3 0.49 1.1E-05 45.7 11.1 124 263-395 292-436 (473)
135 COG0859 RfaF ADP-heptose:LPS h 93.9 2.1 4.6E-05 39.1 13.8 106 9-132 2-109 (334)
136 COG1618 Predicted nucleotide k 91.9 0.92 2E-05 36.0 7.0 57 8-65 5-61 (179)
137 PRK15490 Vi polysaccharide bio 91.7 14 0.00031 36.2 21.8 46 320-367 454-504 (578)
138 PRK10422 lipopolysaccharide co 91.2 2.5 5.4E-05 39.0 10.7 110 4-130 1-113 (352)
139 PHA01633 putative glycosyl tra 90.8 1.3 2.7E-05 40.4 8.0 74 319-394 199-305 (335)
140 PRK13932 stationary phase surv 90.2 9.4 0.0002 33.2 12.4 112 8-134 5-134 (257)
141 PF08660 Alg14: Oligosaccharid 90.0 5.5 0.00012 32.3 10.3 31 104-134 92-130 (170)
142 PRK10916 ADP-heptose:LPS hepto 87.5 5 0.00011 36.9 9.6 103 9-130 1-106 (348)
143 COG0496 SurE Predicted acid ph 87.4 6.3 0.00014 34.0 9.3 109 9-134 1-126 (252)
144 PF05159 Capsule_synth: Capsul 86.6 3.6 7.8E-05 36.3 7.9 82 277-367 141-226 (269)
145 PF02310 B12-binding: B12 bind 86.6 4.6 0.0001 30.4 7.6 35 10-44 2-36 (121)
146 COG2910 Putative NADH-flavin r 86.5 0.75 1.6E-05 37.3 3.1 35 9-47 1-35 (211)
147 PF02951 GSH-S_N: Prokaryotic 86.1 1.3 2.9E-05 33.4 4.1 37 9-45 1-40 (119)
148 TIGR00087 surE 5'/3'-nucleotid 85.7 23 0.00049 30.7 12.6 109 10-134 2-129 (244)
149 PRK14098 glycogen synthase; Pr 85.5 5.4 0.00012 38.6 9.1 75 318-394 359-449 (489)
150 TIGR02095 glgA glycogen/starch 85.0 4.1 8.9E-05 39.3 8.1 38 9-46 1-44 (473)
151 cd00561 CobA_CobO_BtuR ATP:cor 84.6 18 0.0004 28.9 10.2 98 9-115 3-106 (159)
152 PRK09620 hypothetical protein; 84.5 11 0.00023 32.4 9.4 38 8-45 3-52 (229)
153 TIGR03713 acc_sec_asp1 accesso 84.3 5.8 0.00013 38.7 8.7 41 321-363 409-455 (519)
154 TIGR00715 precor6x_red precorr 84.2 13 0.00028 32.5 10.0 33 10-47 2-34 (256)
155 PRK00654 glgA glycogen synthas 84.1 8.8 0.00019 37.0 9.9 38 9-46 1-44 (466)
156 PF04127 DFP: DNA / pantothena 83.8 1.6 3.6E-05 35.9 4.1 39 8-46 3-53 (185)
157 PRK10964 ADP-heptose:LPS hepto 83.7 6.9 0.00015 35.5 8.6 50 9-58 1-52 (322)
158 cd02067 B12-binding B12 bindin 83.6 1.8 3.9E-05 32.7 4.0 36 10-45 1-36 (119)
159 PRK13935 stationary phase surv 83.3 30 0.00065 30.1 12.5 110 9-134 1-129 (253)
160 PRK13934 stationary phase surv 83.1 31 0.00068 30.2 12.2 108 10-133 2-127 (266)
161 PF02441 Flavoprotein: Flavopr 82.8 2.5 5.4E-05 32.5 4.5 38 9-47 1-38 (129)
162 COG2861 Uncharacterized protei 82.6 9.4 0.0002 32.5 8.0 110 9-131 55-179 (250)
163 PRK00346 surE 5'(3')-nucleotid 82.6 32 0.00069 29.9 12.7 107 10-134 2-125 (250)
164 PRK05986 cob(I)alamin adenolsy 81.6 22 0.00047 29.5 9.7 99 8-115 22-126 (191)
165 PRK13933 stationary phase surv 81.5 36 0.00077 29.7 12.7 111 9-134 1-130 (253)
166 TIGR02015 BchY chlorophyllide 81.1 21 0.00046 33.8 10.9 96 8-132 285-380 (422)
167 COG1703 ArgK Putative periplas 80.6 22 0.00048 31.6 9.8 41 8-48 51-91 (323)
168 PRK02261 methylaspartate mutas 80.5 4.2 9.1E-05 31.7 5.0 56 8-63 3-61 (137)
169 PRK02797 4-alpha-L-fucosyltran 80.0 8.6 0.00019 34.3 7.2 121 268-392 151-290 (322)
170 cd00550 ArsA_ATPase Oxyanion-t 79.8 12 0.00025 32.8 8.2 37 11-47 3-39 (254)
171 COG4088 Predicted nucleotide k 79.5 21 0.00045 30.0 8.7 106 11-141 4-116 (261)
172 PF12146 Hydrolase_4: Putative 79.5 4.6 0.0001 27.9 4.5 36 9-44 16-51 (79)
173 PRK10017 colanic acid biosynth 79.3 59 0.0013 30.9 22.8 137 252-394 225-390 (426)
174 PRK13931 stationary phase surv 79.1 44 0.00094 29.3 11.5 108 10-133 2-129 (261)
175 PRK08305 spoVFB dipicolinate s 78.9 3.3 7.1E-05 34.4 4.2 39 8-47 5-44 (196)
176 TIGR02195 heptsyl_trn_II lipop 78.8 11 0.00024 34.3 8.2 102 10-130 1-105 (334)
177 PLN02939 transferase, transfer 78.7 31 0.00067 36.2 11.6 47 320-368 836-889 (977)
178 TIGR00708 cobA cob(I)alamin ad 78.2 18 0.00038 29.5 8.1 98 8-115 5-108 (173)
179 PF01975 SurE: Survival protei 76.9 6.3 0.00014 32.8 5.3 113 9-134 1-134 (196)
180 TIGR01285 nifN nitrogenase mol 76.4 19 0.00041 34.3 9.1 88 8-132 311-398 (432)
181 PRK13982 bifunctional SbtC-lik 76.0 7.9 0.00017 37.0 6.3 40 8-47 256-307 (475)
182 cd01980 Chlide_reductase_Y Chl 75.9 27 0.00059 33.1 10.0 97 8-133 280-376 (416)
183 COG0003 ArsA Predicted ATPase 74.2 49 0.0011 30.0 10.6 40 9-48 2-42 (322)
184 cd01974 Nitrogenase_MoFe_beta 74.2 20 0.00044 34.1 8.8 94 8-132 303-402 (435)
185 PRK05632 phosphate acetyltrans 73.6 61 0.0013 33.1 12.3 102 10-135 4-116 (684)
186 PHA02542 41 41 helicase; Provi 72.1 9.5 0.00021 36.7 5.9 39 10-48 192-230 (473)
187 PRK08760 replicative DNA helic 68.3 18 0.00039 34.9 6.9 41 8-48 229-270 (476)
188 cd01965 Nitrogenase_MoFe_beta_ 68.2 18 0.00039 34.4 7.0 98 8-132 299-396 (428)
189 cd00984 DnaB_C DnaB helicase C 68.0 22 0.00047 30.6 7.0 40 9-48 14-54 (242)
190 TIGR03600 phage_DnaB phage rep 67.5 19 0.00041 34.1 7.0 122 9-134 195-353 (421)
191 TIGR01425 SRP54_euk signal rec 67.5 30 0.00064 32.8 8.0 40 9-48 101-140 (429)
192 PRK11889 flhF flagellar biosyn 67.2 36 0.00078 31.9 8.2 41 8-48 241-281 (436)
193 PRK05595 replicative DNA helic 67.0 22 0.00047 34.1 7.3 40 9-48 202-242 (444)
194 PF06564 YhjQ: YhjQ protein; 66.9 75 0.0016 27.5 9.7 35 11-45 4-39 (243)
195 cd02070 corrinoid_protein_B12- 66.8 12 0.00025 31.4 4.8 39 8-46 82-120 (201)
196 PRK06849 hypothetical protein; 66.7 13 0.00027 34.9 5.6 34 8-45 4-37 (389)
197 PHA01630 putative group 1 glyc 66.0 26 0.00057 32.0 7.3 40 327-368 196-242 (331)
198 TIGR01205 D_ala_D_alaTIGR D-al 65.9 47 0.001 29.9 9.0 36 10-45 1-40 (315)
199 PRK08506 replicative DNA helic 65.8 23 0.0005 34.2 7.1 122 9-134 193-351 (472)
200 TIGR02852 spore_dpaB dipicolin 65.8 8.2 0.00018 31.8 3.6 38 9-46 1-38 (187)
201 cd03466 Nitrogenase_NifN_2 Nit 64.8 1.2E+02 0.0025 29.0 11.6 26 104-132 372-397 (429)
202 KOG3062 RNA polymerase II elon 64.8 53 0.0011 28.0 7.9 35 11-45 4-39 (281)
203 PRK10867 signal recognition pa 64.7 44 0.00095 31.8 8.6 41 9-49 101-142 (433)
204 TIGR02919 accessory Sec system 64.0 35 0.00077 32.5 7.9 91 260-368 282-380 (438)
205 COG1663 LpxK Tetraacyldisaccha 63.8 30 0.00065 31.3 6.9 33 14-46 55-87 (336)
206 cd02037 MRP-like MRP (Multiple 63.6 39 0.00085 27.1 7.3 33 15-47 7-39 (169)
207 TIGR02329 propionate_PrpR prop 63.4 41 0.0009 32.9 8.4 109 20-134 37-172 (526)
208 PRK06732 phosphopantothenate-- 63.3 24 0.00051 30.3 6.1 20 25-44 29-48 (229)
209 PRK04885 ppnK inorganic polyph 63.0 18 0.00039 31.8 5.4 30 337-368 35-70 (265)
210 TIGR00347 bioD dethiobiotin sy 62.8 57 0.0012 26.0 8.1 29 16-44 6-34 (166)
211 PRK06321 replicative DNA helic 62.8 28 0.0006 33.6 7.1 40 9-48 227-267 (472)
212 TIGR02370 pyl_corrinoid methyl 62.7 15 0.00032 30.7 4.7 103 8-130 84-191 (197)
213 cd02071 MM_CoA_mut_B12_BD meth 62.3 14 0.0003 28.0 4.1 37 10-46 1-37 (122)
214 TIGR00959 ffh signal recogniti 62.1 46 0.00099 31.6 8.2 41 9-49 100-141 (428)
215 PRK06904 replicative DNA helic 62.1 32 0.0007 33.2 7.4 40 9-48 222-262 (472)
216 PRK06835 DNA replication prote 61.9 43 0.00093 30.5 7.8 36 9-44 184-219 (329)
217 PRK01077 cobyrinic acid a,c-di 61.4 52 0.0011 31.6 8.7 106 11-135 6-124 (451)
218 smart00851 MGS MGS-like domain 60.9 27 0.00059 24.7 5.2 79 25-129 2-89 (90)
219 PF09314 DUF1972: Domain of un 60.7 21 0.00046 29.4 5.1 54 10-63 3-62 (185)
220 PF01075 Glyco_transf_9: Glyco 60.0 19 0.00042 31.0 5.2 95 259-365 103-208 (247)
221 PRK08006 replicative DNA helic 59.9 74 0.0016 30.7 9.4 123 8-134 224-385 (471)
222 PRK12342 hypothetical protein; 59.6 19 0.0004 31.4 4.8 97 21-134 32-145 (254)
223 COG2185 Sbm Methylmalonyl-CoA 59.5 17 0.00036 28.4 4.0 37 8-44 12-48 (143)
224 PF07429 Glyco_transf_56: 4-al 57.9 35 0.00077 31.0 6.3 75 321-395 245-332 (360)
225 PF01210 NAD_Gly3P_dh_N: NAD-d 57.9 7.3 0.00016 31.1 2.0 32 10-46 1-32 (157)
226 TIGR02113 coaC_strep phosphopa 57.8 17 0.00036 29.8 4.0 38 9-47 1-38 (177)
227 TIGR02195 heptsyl_trn_II lipop 57.5 40 0.00088 30.6 7.1 96 260-365 173-276 (334)
228 cd03114 ArgK-like The function 57.4 81 0.0017 24.8 7.8 36 11-46 2-37 (148)
229 PRK04296 thymidine kinase; Pro 57.2 52 0.0011 27.2 7.0 34 11-44 4-38 (190)
230 PRK07313 phosphopantothenoylcy 56.8 14 0.00031 30.3 3.5 39 9-48 2-40 (182)
231 COG0541 Ffh Signal recognition 56.7 36 0.00077 32.0 6.3 42 9-50 101-142 (451)
232 PRK01175 phosphoribosylformylg 56.5 1.1E+02 0.0025 26.7 9.2 56 8-66 3-58 (261)
233 PLN02929 NADH kinase 56.4 31 0.00067 30.9 5.7 58 336-395 63-136 (301)
234 TIGR00379 cobB cobyrinic acid 56.4 1.9E+02 0.0041 27.7 11.6 107 11-136 2-121 (449)
235 TIGR00345 arsA arsenite-activa 56.3 48 0.001 29.5 7.0 23 26-48 3-25 (284)
236 PRK14098 glycogen synthase; Pr 55.9 22 0.00047 34.5 5.2 39 8-46 5-49 (489)
237 PF08323 Glyco_transf_5: Starc 55.9 11 0.00025 32.6 3.0 26 21-46 18-43 (245)
238 PF06180 CbiK: Cobalt chelatas 55.8 19 0.00041 31.6 4.2 39 262-300 2-43 (262)
239 PRK07952 DNA replication prote 55.7 68 0.0015 27.8 7.6 34 10-43 101-134 (244)
240 cd07039 TPP_PYR_POX Pyrimidine 55.5 72 0.0016 25.6 7.4 29 337-367 63-97 (164)
241 PRK05748 replicative DNA helic 55.3 46 0.001 31.9 7.3 41 8-48 203-244 (448)
242 KOG0780 Signal recognition par 55.1 71 0.0015 29.7 7.7 39 10-48 103-141 (483)
243 PRK05920 aromatic acid decarbo 54.9 20 0.00043 30.1 4.0 38 9-47 4-41 (204)
244 cd02069 methionine_synthase_B1 54.4 25 0.00054 29.8 4.7 41 8-48 88-128 (213)
245 PRK13789 phosphoribosylamine-- 54.4 41 0.00088 32.0 6.6 35 8-47 4-38 (426)
246 COG3660 Predicted nucleoside-d 54.3 1.5E+02 0.0033 26.0 16.8 37 327-365 234-271 (329)
247 KOG2941 Beta-1,4-mannosyltrans 54.3 46 0.00099 30.3 6.3 124 8-138 12-142 (444)
248 PRK05636 replicative DNA helic 54.1 38 0.00083 33.0 6.4 122 8-134 265-424 (505)
249 PF02606 LpxK: Tetraacyldisacc 53.8 1E+02 0.0022 28.1 8.8 34 14-47 43-76 (326)
250 PRK10964 ADP-heptose:LPS hepto 53.6 1.7E+02 0.0037 26.4 10.4 126 261-396 178-322 (322)
251 PRK03359 putative electron tra 53.3 28 0.00061 30.4 4.9 98 20-134 32-148 (256)
252 cd03788 GT1_TPS Trehalose-6-Ph 53.3 31 0.00066 33.2 5.7 68 326-395 346-426 (460)
253 PRK00090 bioD dithiobiotin syn 53.1 1.4E+02 0.003 25.2 10.4 34 11-44 2-36 (222)
254 PRK09165 replicative DNA helic 53.1 67 0.0015 31.3 8.0 121 9-134 218-392 (497)
255 PRK03708 ppnK inorganic polyph 53.0 29 0.00063 30.7 5.1 51 337-394 57-110 (277)
256 COG1484 DnaC DNA replication p 52.5 29 0.00063 30.3 4.9 38 8-45 105-142 (254)
257 COG1036 Archaeal flavoproteins 52.3 33 0.00071 27.3 4.5 37 8-45 8-47 (187)
258 PRK10916 ADP-heptose:LPS hepto 52.3 45 0.00097 30.6 6.5 96 260-365 179-286 (348)
259 PRK01231 ppnK inorganic polyph 52.3 1.3E+02 0.0028 27.0 9.1 52 336-394 61-116 (295)
260 COG1797 CobB Cobyrinic acid a, 52.2 1.1E+02 0.0023 29.0 8.5 30 15-44 8-37 (451)
261 COG0052 RpsB Ribosomal protein 52.1 42 0.00091 28.9 5.5 31 104-134 156-188 (252)
262 TIGR01283 nifE nitrogenase mol 51.6 87 0.0019 30.1 8.5 26 104-132 395-420 (456)
263 PRK13768 GTPase; Provisional 51.3 57 0.0012 28.5 6.6 37 10-46 4-40 (253)
264 cd01968 Nitrogenase_NifE_I Nit 51.0 1.9E+02 0.0041 27.3 10.6 25 104-131 356-380 (410)
265 PRK00784 cobyric acid synthase 50.8 1.6E+02 0.0035 28.6 10.2 34 11-44 5-39 (488)
266 cd01141 TroA_d Periplasmic bin 50.5 26 0.00056 28.7 4.2 37 95-133 62-100 (186)
267 PLN02470 acetolactate synthase 49.8 29 0.00063 34.6 5.1 93 267-367 2-110 (585)
268 PRK10422 lipopolysaccharide co 49.7 75 0.0016 29.2 7.5 98 260-365 182-287 (352)
269 PF06506 PrpR_N: Propionate ca 49.1 24 0.00052 28.8 3.7 110 20-135 17-153 (176)
270 PRK04761 ppnK inorganic polyph 49.1 16 0.00035 31.7 2.7 29 338-368 26-58 (246)
271 PRK14099 glycogen synthase; Pr 49.0 31 0.00067 33.4 5.0 38 8-45 3-46 (485)
272 PRK06731 flhF flagellar biosyn 48.9 1.6E+02 0.0034 26.0 8.9 40 8-47 75-114 (270)
273 PRK07206 hypothetical protein; 48.8 76 0.0016 29.9 7.6 32 10-46 4-35 (416)
274 PRK08840 replicative DNA helic 48.7 1.3E+02 0.0028 29.1 9.0 41 8-48 217-258 (464)
275 PRK06249 2-dehydropantoate 2-r 48.6 26 0.00055 31.7 4.2 34 8-46 5-38 (313)
276 COG0240 GpsA Glycerol-3-phosph 48.6 94 0.002 28.2 7.5 32 9-45 2-33 (329)
277 TIGR00665 DnaB replicative DNA 48.3 61 0.0013 30.9 6.9 40 9-48 196-236 (434)
278 PF06925 MGDG_synth: Monogalac 48.1 65 0.0014 25.9 6.1 23 21-43 1-24 (169)
279 COG2894 MinD Septum formation 47.9 35 0.00076 29.0 4.3 38 11-48 4-43 (272)
280 PF02374 ArsA_ATPase: Anion-tr 47.7 28 0.00061 31.4 4.2 39 10-48 2-41 (305)
281 TIGR01501 MthylAspMutase methy 47.4 40 0.00087 26.1 4.4 55 9-63 2-59 (134)
282 PRK14477 bifunctional nitrogen 47.3 2E+02 0.0043 30.7 10.7 95 8-132 320-414 (917)
283 PRK03094 hypothetical protein; 46.9 19 0.00041 24.9 2.3 20 25-44 10-29 (80)
284 PF04244 DPRP: Deoxyribodipyri 46.8 18 0.0004 30.8 2.7 25 21-45 47-71 (224)
285 cd07025 Peptidase_S66 LD-Carbo 46.7 33 0.00073 30.5 4.5 77 272-369 44-122 (282)
286 PRK03372 ppnK inorganic polyph 46.7 48 0.001 29.9 5.4 54 334-394 69-126 (306)
287 TIGR02655 circ_KaiC circadian 46.2 2.5E+02 0.0054 27.3 10.7 40 9-48 264-303 (484)
288 TIGR00421 ubiX_pad polyprenyl 45.9 22 0.00049 29.2 3.0 37 11-48 2-38 (181)
289 PRK02155 ppnK NAD(+)/NADH kina 45.8 20 0.00043 32.1 2.9 32 334-367 60-95 (291)
290 COG0801 FolK 7,8-dihydro-6-hyd 45.7 48 0.001 26.5 4.7 29 263-291 3-31 (160)
291 cd02034 CooC The accessory pro 45.5 57 0.0012 24.4 5.0 37 10-46 1-37 (116)
292 COG0859 RfaF ADP-heptose:LPS h 45.4 41 0.0009 30.7 5.1 98 9-134 176-279 (334)
293 PRK04940 hypothetical protein; 45.4 76 0.0016 26.0 5.9 32 104-135 60-92 (180)
294 PF09001 DUF1890: Domain of un 45.2 24 0.00053 27.2 2.8 28 20-47 11-38 (139)
295 TIGR02482 PFKA_ATP 6-phosphofr 45.0 37 0.0008 30.5 4.5 43 334-376 86-132 (301)
296 COG3640 CooC CO dehydrogenase 44.9 2.1E+02 0.0045 24.8 9.9 41 9-49 1-42 (255)
297 PRK08265 short chain dehydroge 44.8 45 0.00097 29.0 5.1 32 10-44 7-38 (261)
298 PRK07236 hypothetical protein; 44.7 44 0.00096 31.1 5.3 38 1-45 1-38 (386)
299 PRK07773 replicative DNA helic 44.6 69 0.0015 33.8 7.0 122 9-135 218-377 (886)
300 cd01425 RPS2 Ribosomal protein 44.5 58 0.0013 27.0 5.3 31 104-134 127-159 (193)
301 COG0205 PfkA 6-phosphofructoki 44.5 73 0.0016 29.2 6.3 114 9-132 3-125 (347)
302 cd07062 Peptidase_S66_mccF_lik 44.2 58 0.0012 29.4 5.7 76 273-369 49-126 (308)
303 cd02032 Bchl_like This family 44.1 41 0.0009 29.4 4.7 37 9-45 1-37 (267)
304 TIGR01281 DPOR_bchL light-inde 44.0 42 0.00091 29.4 4.8 37 9-45 1-37 (268)
305 PRK11519 tyrosine kinase; Prov 43.6 1.3E+02 0.0027 31.0 8.6 40 8-47 525-566 (719)
306 PF00070 Pyr_redox: Pyridine n 43.6 41 0.00089 23.0 3.7 24 24-47 10-33 (80)
307 CHL00072 chlL photochlorophyll 43.4 48 0.001 29.6 5.0 39 9-47 1-39 (290)
308 PF13450 NAD_binding_8: NAD(P) 43.4 31 0.00068 22.9 2.9 23 25-47 8-30 (68)
309 PF10649 DUF2478: Protein of u 43.4 1.7E+02 0.0037 23.4 13.6 115 12-137 2-135 (159)
310 PLN02939 transferase, transfer 42.8 44 0.00095 35.1 5.1 39 8-46 481-525 (977)
311 PRK13234 nifH nitrogenase redu 42.5 45 0.00098 29.9 4.7 37 10-46 6-42 (295)
312 PRK06029 3-octaprenyl-4-hydrox 42.3 36 0.00077 28.1 3.7 38 9-47 2-40 (185)
313 PF03698 UPF0180: Uncharacteri 42.3 24 0.00051 24.5 2.2 22 25-46 10-31 (80)
314 PRK08155 acetolactate synthase 42.2 98 0.0021 30.7 7.5 91 267-367 3-110 (564)
315 PRK12825 fabG 3-ketoacyl-(acyl 42.2 54 0.0012 27.8 5.2 38 1-44 1-38 (249)
316 PRK06719 precorrin-2 dehydroge 42.2 36 0.00079 27.1 3.7 33 8-45 13-45 (157)
317 PRK05784 phosphoribosylamine-- 42.0 2.3E+02 0.005 27.6 9.6 31 9-44 1-33 (486)
318 PRK07004 replicative DNA helic 41.9 79 0.0017 30.4 6.5 41 8-48 213-254 (460)
319 cd07037 TPP_PYR_MenD Pyrimidin 41.8 25 0.00055 28.2 2.7 29 337-367 60-94 (162)
320 cd03412 CbiK_N Anaerobic cobal 41.8 55 0.0012 25.0 4.5 39 261-299 1-41 (127)
321 PRK13604 luxD acyl transferase 41.5 55 0.0012 29.4 5.0 36 8-43 36-71 (307)
322 PLN02935 Bifunctional NADH kin 41.3 65 0.0014 31.1 5.6 53 335-394 260-316 (508)
323 PF06506 PrpR_N: Propionate ca 41.1 12 0.00027 30.5 0.8 32 337-369 32-63 (176)
324 KOG1209 1-Acyl dihydroxyaceton 41.0 41 0.00088 28.4 3.7 36 1-42 1-38 (289)
325 COG0503 Apt Adenine/guanine ph 41.0 72 0.0016 26.1 5.3 28 104-131 53-82 (179)
326 KOG0541 Alkyl hydroperoxide re 40.8 64 0.0014 25.6 4.5 38 8-45 43-87 (171)
327 TIGR00521 coaBC_dfp phosphopan 40.2 38 0.00083 31.7 4.0 39 8-47 3-41 (390)
328 PF14626 RNase_Zc3h12a_2: Zc3h 39.9 40 0.00087 25.2 3.2 27 22-48 9-35 (122)
329 PRK03501 ppnK inorganic polyph 39.8 69 0.0015 28.2 5.3 51 337-394 39-95 (264)
330 PRK09219 xanthine phosphoribos 39.7 84 0.0018 26.0 5.5 31 104-134 50-82 (189)
331 PRK05579 bifunctional phosphop 39.7 46 0.001 31.3 4.4 40 8-48 6-45 (399)
332 PRK14077 pnk inorganic polypho 39.6 28 0.00061 31.0 2.9 33 333-367 60-96 (287)
333 cd02065 B12-binding_like B12 b 39.1 53 0.0012 24.6 4.1 34 11-44 2-35 (125)
334 COG0299 PurN Folate-dependent 38.9 1.5E+02 0.0032 24.6 6.6 95 251-368 42-137 (200)
335 cd01983 Fer4_NifH The Fer4_Nif 38.8 79 0.0017 21.8 4.8 33 11-43 2-34 (99)
336 TIGR02699 archaeo_AfpA archaeo 38.5 43 0.00094 27.3 3.6 37 11-48 2-40 (174)
337 PRK02645 ppnK inorganic polyph 38.2 29 0.00064 31.2 2.8 30 336-367 56-89 (305)
338 PF00731 AIRC: AIR carboxylase 38.1 62 0.0013 25.6 4.2 86 264-372 3-91 (150)
339 PRK04946 hypothetical protein; 38.0 32 0.00068 28.2 2.7 57 279-353 112-169 (181)
340 PRK12475 thiamine/molybdopteri 37.8 1.3E+02 0.0028 27.6 6.9 32 8-44 24-56 (338)
341 COG1348 NifH Nitrogenase subun 37.6 88 0.0019 26.9 5.2 40 9-48 2-41 (278)
342 PF01497 Peripla_BP_2: Peripla 37.5 53 0.0011 27.9 4.3 32 104-135 60-93 (238)
343 TIGR01007 eps_fam capsular exo 37.3 89 0.0019 25.9 5.5 38 9-46 18-56 (204)
344 COG2210 Peroxiredoxin family p 37.3 55 0.0012 25.3 3.7 36 10-45 4-40 (137)
345 PRK06522 2-dehydropantoate 2-r 37.1 41 0.00089 30.0 3.7 31 9-44 1-31 (304)
346 PRK08057 cobalt-precorrin-6x r 37.1 2.8E+02 0.0061 24.1 10.5 32 10-46 4-35 (248)
347 PLN02989 cinnamyl-alcohol dehy 37.0 65 0.0014 29.1 5.0 37 4-44 1-37 (325)
348 PRK00207 sulfur transfer compl 37.0 87 0.0019 24.0 4.9 24 21-44 16-40 (128)
349 PRK07178 pyruvate carboxylase 36.9 2.8E+02 0.006 26.9 9.4 35 9-48 3-37 (472)
350 TIGR03880 KaiC_arch_3 KaiC dom 36.8 39 0.00085 28.7 3.3 40 9-48 17-56 (224)
351 TIGR00730 conserved hypothetic 36.5 63 0.0014 26.5 4.2 35 10-44 2-40 (178)
352 COG1066 Sms Predicted ATP-depe 36.5 22 0.00048 33.1 1.7 38 10-48 95-132 (456)
353 PRK11914 diacylglycerol kinase 36.4 76 0.0017 28.5 5.3 29 338-368 65-97 (306)
354 PF03403 PAF-AH_p_II: Platelet 36.2 34 0.00073 32.0 3.0 39 8-46 99-137 (379)
355 cd03146 GAT1_Peptidase_E Type 36.2 1.6E+02 0.0035 24.7 6.9 44 251-296 20-66 (212)
356 COG2159 Predicted metal-depend 36.2 84 0.0018 28.1 5.4 110 226-356 97-211 (293)
357 TIGR02700 flavo_MJ0208 archaeo 36.1 53 0.0012 28.2 4.0 36 11-47 2-40 (234)
358 PF15092 UPF0728: Uncharacteri 35.9 1.2E+02 0.0027 21.3 4.8 25 21-45 23-47 (88)
359 cd01121 Sms Sms (bacterial rad 35.9 3.7E+02 0.008 25.1 10.6 39 9-47 83-121 (372)
360 PF12695 Abhydrolase_5: Alpha/ 35.7 71 0.0015 24.3 4.5 33 12-44 2-34 (145)
361 PRK05282 (alpha)-aspartyl dipe 35.7 2E+02 0.0043 24.8 7.3 42 251-294 24-65 (233)
362 TIGR01380 glut_syn glutathione 35.7 48 0.001 30.0 3.8 38 9-46 1-41 (312)
363 PF02572 CobA_CobO_BtuR: ATP:c 35.7 72 0.0016 26.0 4.4 99 8-115 3-107 (172)
364 cd00763 Bacterial_PFK Phosphof 35.6 31 0.00067 31.2 2.5 43 334-376 87-132 (317)
365 PRK02910 light-independent pro 35.4 67 0.0015 31.5 5.0 26 104-132 362-387 (519)
366 TIGR01278 DPOR_BchB light-inde 35.4 62 0.0013 31.6 4.8 27 104-133 364-390 (511)
367 TIGR01917 gly_red_sel_B glycin 35.3 1.2E+02 0.0025 28.7 6.1 43 93-137 327-376 (431)
368 PF12500 TRSP: TRSP domain C t 35.2 1.1E+02 0.0025 24.3 5.3 38 8-47 57-94 (155)
369 PRK02231 ppnK inorganic polyph 35.0 37 0.0008 30.0 2.9 34 332-367 37-74 (272)
370 cd01143 YvrC Periplasmic bindi 35.0 74 0.0016 26.0 4.6 38 95-134 53-91 (195)
371 PRK12826 3-ketoacyl-(acyl-carr 34.8 92 0.002 26.5 5.4 33 9-45 7-39 (251)
372 TIGR01918 various_sel_PB selen 34.7 1.1E+02 0.0023 28.9 5.8 44 92-137 326-376 (431)
373 PF03721 UDPG_MGDP_dh_N: UDP-g 34.7 74 0.0016 26.2 4.5 33 9-46 1-33 (185)
374 TIGR02483 PFK_mixed phosphofru 34.7 33 0.00071 31.2 2.5 43 334-376 89-134 (324)
375 cd01981 Pchlide_reductase_B Pc 34.7 73 0.0016 30.3 5.1 28 104-134 370-397 (430)
376 PRK06603 enoyl-(acyl carrier p 34.6 80 0.0017 27.4 5.0 35 9-44 8-42 (260)
377 PRK01911 ppnK inorganic polyph 34.6 38 0.00083 30.2 2.9 33 333-367 60-96 (292)
378 PF06792 UPF0261: Uncharacteri 34.3 2.1E+02 0.0045 27.0 7.5 98 259-371 183-282 (403)
379 PRK06077 fabG 3-ketoacyl-(acyl 34.3 79 0.0017 27.0 4.9 20 25-44 19-38 (252)
380 PF07355 GRDB: Glycine/sarcosi 34.2 87 0.0019 28.6 5.0 38 89-131 70-117 (349)
381 COG1090 Predicted nucleoside-d 34.1 1.9E+02 0.0041 25.7 6.8 23 26-48 12-34 (297)
382 PRK01372 ddl D-alanine--D-alan 34.0 81 0.0017 28.2 5.1 37 9-45 5-45 (304)
383 PF00448 SRP54: SRP54-type pro 34.0 87 0.0019 26.0 4.8 40 9-48 2-41 (196)
384 COG3340 PepE Peptidase E [Amin 34.0 2.8E+02 0.006 23.5 7.5 43 251-294 24-66 (224)
385 KOG1014 17 beta-hydroxysteroid 33.9 43 0.00092 30.0 3.0 33 10-45 50-82 (312)
386 COG4081 Uncharacterized protei 33.9 1.1E+02 0.0023 23.5 4.6 38 10-47 5-43 (148)
387 cd01147 HemV-2 Metal binding p 33.8 67 0.0015 27.8 4.4 31 104-134 74-107 (262)
388 PRK07454 short chain dehydroge 33.8 92 0.002 26.5 5.2 35 8-45 5-39 (241)
389 PRK00652 lpxK tetraacyldisacch 33.7 75 0.0016 28.9 4.7 39 9-47 50-90 (325)
390 PF02702 KdpD: Osmosensitive K 33.5 80 0.0017 26.4 4.3 37 8-44 5-41 (211)
391 PF05728 UPF0227: Uncharacteri 33.5 1.9E+02 0.0041 23.9 6.7 31 106-136 61-92 (187)
392 PF01372 Melittin: Melittin; 33.5 7 0.00015 19.9 -1.1 17 348-364 1-17 (26)
393 PF02056 Glyco_hydro_4: Family 33.4 2.7E+02 0.006 22.9 7.8 111 20-137 39-172 (183)
394 COG0438 RfaG Glycosyltransfera 33.3 2.5E+02 0.0055 24.5 8.4 45 321-367 257-308 (381)
395 PRK08303 short chain dehydroge 33.3 85 0.0018 28.2 5.0 33 9-44 8-40 (305)
396 PRK14075 pnk inorganic polypho 33.2 67 0.0015 28.1 4.2 51 337-394 41-92 (256)
397 COG2109 BtuR ATP:corrinoid ade 33.2 2.8E+02 0.0062 23.0 9.6 99 8-115 28-133 (198)
398 COG4221 Short-chain alcohol de 33.1 1E+02 0.0022 26.7 5.0 35 8-45 5-39 (246)
399 PF04748 Polysacc_deac_2: Dive 33.0 3E+02 0.0065 23.3 10.5 106 8-131 22-147 (213)
400 PF01695 IstB_IS21: IstB-like 33.0 86 0.0019 25.6 4.6 37 8-44 47-83 (178)
401 PF03720 UDPG_MGDP_dh_C: UDP-g 33.0 56 0.0012 23.9 3.2 22 23-44 17-38 (106)
402 PF07905 PucR: Purine cataboli 32.9 2.1E+02 0.0047 21.5 8.1 42 251-296 36-78 (123)
403 cd00861 ProRS_anticodon_short 32.9 88 0.0019 21.9 4.2 36 9-44 2-39 (94)
404 CHL00076 chlB photochlorophyll 32.7 74 0.0016 31.1 4.8 26 104-132 374-399 (513)
405 PRK09444 pntB pyridine nucleot 32.7 71 0.0015 30.3 4.3 39 8-46 306-347 (462)
406 cd01421 IMPCH Inosine monophos 32.7 64 0.0014 26.6 3.6 38 23-63 11-48 (187)
407 COG0300 DltE Short-chain dehyd 32.5 47 0.001 29.2 3.0 55 10-67 7-66 (265)
408 PRK13054 lipid kinase; Reviewe 32.5 2.1E+02 0.0045 25.6 7.4 81 261-367 4-92 (300)
409 PLN02695 GDP-D-mannose-3',5'-e 32.4 99 0.0021 28.7 5.5 36 4-44 18-53 (370)
410 COG0299 PurN Folate-dependent 32.3 1.1E+02 0.0024 25.4 4.9 32 104-135 29-60 (200)
411 PLN00016 RNA-binding protein; 32.3 59 0.0013 30.2 4.0 36 8-45 52-89 (378)
412 PF03808 Glyco_tran_WecB: Glyc 32.2 2.7E+02 0.0059 22.5 8.1 95 25-141 37-141 (172)
413 TIGR00064 ftsY signal recognit 32.2 1.2E+02 0.0026 26.9 5.6 40 8-47 72-111 (272)
414 PRK06114 short chain dehydroge 32.1 91 0.002 26.9 4.9 32 10-44 9-40 (254)
415 PRK08674 bifunctional phosphog 32.0 4E+02 0.0086 24.3 9.9 56 10-66 80-135 (337)
416 COG2085 Predicted dinucleotide 31.9 50 0.0011 27.8 2.9 21 26-46 14-34 (211)
417 PRK07889 enoyl-(acyl carrier p 31.9 86 0.0019 27.2 4.7 32 10-44 8-41 (256)
418 PRK12921 2-dehydropantoate 2-r 31.8 56 0.0012 29.2 3.6 31 9-44 1-31 (305)
419 PRK06194 hypothetical protein; 31.7 90 0.0019 27.5 4.9 31 11-44 8-38 (287)
420 COG3769 Predicted hydrolase (H 31.7 1.4E+02 0.003 25.5 5.3 29 20-48 23-51 (274)
421 COG0062 Uncharacterized conser 31.7 1.4E+02 0.0031 25.0 5.6 37 8-47 49-87 (203)
422 PRK03202 6-phosphofructokinase 31.7 39 0.00085 30.7 2.5 43 334-376 88-133 (320)
423 PRK12829 short chain dehydroge 31.6 98 0.0021 26.7 5.1 32 9-44 12-43 (264)
424 PRK13185 chlL protochlorophyll 31.5 90 0.002 27.3 4.8 36 10-45 4-39 (270)
425 TIGR02400 trehalose_OtsA alpha 31.5 69 0.0015 30.8 4.3 67 327-395 342-421 (456)
426 cd02040 NifH NifH gene encodes 31.5 80 0.0017 27.6 4.5 37 10-46 3-39 (270)
427 PRK07414 cob(I)yrinic acid a,c 31.4 2.9E+02 0.0064 22.6 10.0 100 8-115 21-126 (178)
428 PRK05876 short chain dehydroge 31.3 92 0.002 27.4 4.9 32 10-44 7-38 (275)
429 PRK14573 bifunctional D-alanyl 31.3 52 0.0011 34.4 3.7 30 10-43 6-35 (809)
430 PRK08339 short chain dehydroge 31.2 1E+02 0.0022 26.8 5.2 33 9-44 8-40 (263)
431 PF12496 BNIP2: Bcl2-/adenovir 31.2 22 0.00048 27.1 0.7 20 327-349 104-123 (127)
432 COG3349 Uncharacterized conser 31.1 53 0.0011 31.6 3.3 35 9-48 1-35 (485)
433 PRK12723 flagellar biosynthesi 31.1 3E+02 0.0064 25.9 8.2 41 8-48 174-218 (388)
434 PRK07576 short chain dehydroge 31.1 1.1E+02 0.0024 26.6 5.3 21 24-44 21-41 (264)
435 PRK04539 ppnK inorganic polyph 31.0 48 0.001 29.7 2.9 34 333-368 64-101 (296)
436 PRK04328 hypothetical protein; 31.0 3.5E+02 0.0076 23.4 10.0 40 9-48 24-63 (249)
437 TIGR01286 nifK nitrogenase mol 30.9 74 0.0016 31.1 4.4 26 104-132 437-462 (515)
438 PRK07666 fabG 3-ketoacyl-(acyl 30.9 1.1E+02 0.0023 26.0 5.1 32 11-45 9-40 (239)
439 PRK13230 nitrogenase reductase 30.6 87 0.0019 27.7 4.6 36 10-45 3-38 (279)
440 cd01973 Nitrogenase_VFe_beta_l 30.6 5E+02 0.011 25.0 11.7 25 104-131 381-405 (454)
441 PF00551 Formyl_trans_N: Formy 30.5 1.2E+02 0.0027 24.7 5.2 33 9-44 1-35 (181)
442 PRK08277 D-mannonate oxidoredu 30.4 1E+02 0.0022 27.0 5.0 34 8-44 9-42 (278)
443 PF08357 SEFIR: SEFIR domain; 30.2 71 0.0015 25.0 3.6 31 11-41 4-35 (150)
444 PF00142 Fer4_NifH: 4Fe-4S iro 30.2 1.1E+02 0.0023 27.0 4.7 40 9-48 1-40 (273)
445 cd01976 Nitrogenase_MoFe_alpha 30.0 70 0.0015 30.4 4.1 26 104-132 369-394 (421)
446 PRK02649 ppnK inorganic polyph 30.0 47 0.001 29.9 2.7 54 334-394 65-122 (305)
447 PRK08690 enoyl-(acyl carrier p 29.8 1.1E+02 0.0024 26.5 5.1 38 1-43 1-39 (261)
448 PF10093 DUF2331: Uncharacteri 29.8 1.1E+02 0.0024 28.4 5.1 77 269-363 187-286 (374)
449 TIGR00640 acid_CoA_mut_C methy 29.8 1.1E+02 0.0025 23.5 4.5 56 8-63 2-60 (132)
450 PRK12481 2-deoxy-D-gluconate 3 29.5 1.2E+02 0.0025 26.2 5.2 33 9-44 8-40 (251)
451 PF13614 AAA_31: AAA domain; P 29.5 1E+02 0.0022 24.1 4.5 38 11-48 3-41 (157)
452 TIGR01744 XPRTase xanthine pho 29.3 1.5E+02 0.0033 24.5 5.5 30 104-133 50-81 (191)
453 PRK06555 pyrophosphate--fructo 29.2 80 0.0017 29.7 4.1 43 334-376 107-158 (403)
454 PRK07067 sorbitol dehydrogenas 29.2 1.1E+02 0.0023 26.4 4.9 31 11-44 8-38 (257)
455 PRK14619 NAD(P)H-dependent gly 29.1 72 0.0016 28.7 3.9 33 8-45 4-36 (308)
456 PLN02293 adenine phosphoribosy 29.1 1.8E+02 0.004 24.0 5.9 28 104-131 62-91 (187)
457 PRK00421 murC UDP-N-acetylmura 29.0 87 0.0019 30.1 4.6 33 8-44 7-39 (461)
458 PRK15424 propionate catabolism 28.9 2.6E+02 0.0056 27.6 7.7 42 88-134 141-182 (538)
459 PRK14106 murD UDP-N-acetylmura 28.9 1.1E+02 0.0024 29.2 5.3 32 9-45 6-37 (450)
460 PRK13982 bifunctional SbtC-lik 28.8 87 0.0019 30.2 4.4 41 8-49 70-110 (475)
461 PF01738 DLH: Dienelactone hyd 28.7 99 0.0021 25.9 4.5 33 9-41 14-46 (218)
462 PRK14618 NAD(P)H-dependent gly 28.7 82 0.0018 28.6 4.2 33 8-45 4-36 (328)
463 PRK12744 short chain dehydroge 28.6 1.2E+02 0.0027 26.1 5.2 32 10-44 9-40 (257)
464 PRK14071 6-phosphofructokinase 28.6 47 0.001 30.7 2.6 43 334-376 102-148 (360)
465 cd02033 BchX Chlorophyllide re 28.5 1.3E+02 0.0029 27.4 5.4 40 8-47 31-70 (329)
466 COG2099 CobK Precorrin-6x redu 28.4 70 0.0015 27.7 3.3 35 93-132 190-229 (257)
467 PRK04148 hypothetical protein; 28.3 61 0.0013 25.1 2.7 34 8-47 17-50 (134)
468 PRK05579 bifunctional phosphop 28.3 1.2E+02 0.0026 28.5 5.3 23 24-46 216-238 (399)
469 PHA02857 monoglyceride lipase; 28.2 96 0.0021 27.0 4.5 37 8-44 24-60 (276)
470 PRK07806 short chain dehydroge 28.2 1.3E+02 0.0029 25.6 5.3 20 25-44 19-38 (248)
471 PRK00771 signal recognition pa 28.2 1.4E+02 0.0031 28.5 5.7 41 8-48 95-135 (437)
472 PRK12446 undecaprenyldiphospho 28.1 52 0.0011 30.3 2.8 27 337-365 91-120 (352)
473 PRK13236 nitrogenase reductase 28.1 1E+02 0.0023 27.5 4.6 37 10-46 8-44 (296)
474 PF02780 Transketolase_C: Tran 28.1 1E+02 0.0022 23.2 4.0 35 8-44 9-43 (124)
475 TIGR01743 purR_Bsub pur operon 28.0 1.6E+02 0.0034 26.0 5.5 30 104-133 128-159 (268)
476 cd01018 ZntC Metal binding pro 27.9 2.5E+02 0.0053 24.6 6.9 44 90-135 205-250 (266)
477 cd01075 NAD_bind_Leu_Phe_Val_D 27.9 77 0.0017 26.5 3.6 30 8-42 28-57 (200)
478 COG2084 MmsB 3-hydroxyisobutyr 27.7 89 0.0019 27.8 4.0 34 10-48 2-35 (286)
479 PRK07453 protochlorophyllide o 27.7 1.2E+02 0.0025 27.4 5.0 33 9-44 6-38 (322)
480 KOG1111 N-acetylglucosaminyltr 27.6 1.1E+02 0.0024 28.2 4.5 85 275-367 209-303 (426)
481 TIGR00355 purH phosphoribosyla 27.5 79 0.0017 30.5 3.8 38 23-63 11-48 (511)
482 PLN02884 6-phosphofructokinase 27.2 94 0.002 29.3 4.3 43 334-376 138-189 (411)
483 PRK10749 lysophospholipase L2; 27.2 1.1E+02 0.0025 27.7 4.9 35 10-44 55-89 (330)
484 COG0162 TyrS Tyrosyl-tRNA synt 27.1 69 0.0015 30.1 3.3 36 9-45 35-73 (401)
485 PF07991 IlvN: Acetohydroxy ac 27.1 72 0.0016 25.7 3.0 35 8-47 4-38 (165)
486 PF13460 NAD_binding_10: NADH( 27.1 69 0.0015 25.8 3.1 86 17-134 5-98 (183)
487 COG0467 RAD55 RecA-superfamily 27.1 1.5E+02 0.0032 25.9 5.4 41 8-48 23-63 (260)
488 cd03793 GT1_Glycogen_synthase_ 27.1 43 0.00093 33.0 2.1 35 331-367 468-506 (590)
489 PRK03378 ppnK inorganic polyph 27.0 59 0.0013 29.1 2.8 55 333-394 59-117 (292)
490 PRK06222 ferredoxin-NADP(+) re 27.0 1.3E+02 0.0027 26.7 5.0 38 9-48 99-136 (281)
491 TIGR00147 lipid kinase, YegS/R 27.0 2.3E+02 0.0049 25.2 6.7 29 338-368 58-92 (293)
492 COG0569 TrkA K+ transport syst 27.0 57 0.0012 27.8 2.7 23 25-47 12-34 (225)
493 PLN02240 UDP-glucose 4-epimera 27.0 1.2E+02 0.0026 27.6 5.0 32 9-44 6-37 (352)
494 PRK07984 enoyl-(acyl carrier p 26.9 1.2E+02 0.0026 26.4 4.8 34 10-44 7-40 (262)
495 COG1255 Uncharacterized protei 26.8 74 0.0016 23.8 2.7 34 24-61 24-57 (129)
496 COG0771 MurD UDP-N-acetylmuram 26.8 1E+02 0.0023 29.4 4.5 35 8-47 7-41 (448)
497 PRK06398 aldose dehydrogenase; 26.7 1.3E+02 0.0029 26.0 5.0 32 10-44 7-38 (258)
498 PRK09213 pur operon repressor; 26.7 1.7E+02 0.0037 25.9 5.5 30 104-133 130-161 (271)
499 TIGR02114 coaB_strep phosphopa 26.6 64 0.0014 27.6 2.9 20 25-44 28-47 (227)
500 KOG1387 Glycosyltransferase [C 26.5 5.2E+02 0.011 23.9 10.2 42 96-139 144-186 (465)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7e-61 Score=445.56 Aligned_cols=391 Identities=42% Similarity=0.775 Sum_probs=292.3
Q ss_pred CccCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCCCCCCCCHHHH
Q 016062 1 MEKQGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHA-SNHPDFTFLPLSDGSSSTPKASDDFIDF 79 (396)
Q Consensus 1 ~~~m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~-~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 79 (396)
|++... +.||+++|++++||++||+.||+.|+.||+.|||++++.+.... ....++++..+|++++++.........+
T Consensus 1 ~~~~~~-~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 1 MEEKPA-RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCcCCC-CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 554332 68999999999999999999999999999999999998764221 1124799999998887642111233455
Q ss_pred HHHHHHHchHHHHHHHHHHHhcCC-CcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCC-CCCC
Q 016062 80 MSNINLNCRAPLQEALTRMIAKQE-DLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGH-IPFP 157 (396)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~l~~~~~-~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~-~p~~ 157 (396)
+..+...+...++++++++..... +++|||+|.++.|+..+|+++|||.+.|++++++.++.+.+++.....+. .|..
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 555556677777777777643222 57999999999999999999999999999999887766655433222111 1211
Q ss_pred C--CcccccCCCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEeccccc
Q 016062 158 D--SKLLELVPGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHL 235 (396)
Q Consensus 158 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~ 235 (396)
. ......+++++.++.++++.............+.....+.+++++++||++++|+..+++++..+++|+++|||++.
T Consensus 160 ~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~ 239 (451)
T PLN02410 160 EPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHL 239 (451)
T ss_pred ccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEeccccc
Confidence 1 11112356665566666654321112222333322223567899999999999999999998766678999999986
Q ss_pred CCCCCCCCcc-ccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchh
Q 016062 236 AAPASSCSLL-KEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDS 314 (396)
Q Consensus 236 ~~~~~~~~~~-~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~ 314 (396)
.... ...+ ..++++.+||+++++++||||||||....+.+++++++.+|+..+++|||+++.+...+.++.+.+|++
T Consensus 240 ~~~~--~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~ 317 (451)
T PLN02410 240 VASA--PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKE 317 (451)
T ss_pred ccCC--CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChh
Confidence 4321 0122 233458999999888999999999999999999999999999999999999985422222223458999
Q ss_pred HHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc-----------cCCCCcH
Q 016062 315 FKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS-----------RKGGSSY 383 (396)
Q Consensus 315 ~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~-----------~~~~~~~ 383 (396)
+++|.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+ -.+..+.
T Consensus 318 f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 397 (451)
T PLN02410 318 FSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDR 397 (451)
T ss_pred HHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999 1134566
Q ss_pred HHHHHHHHHHh
Q 016062 384 NLLNELVDHIM 394 (396)
Q Consensus 384 ~~l~~~~~~il 394 (396)
+++.++|++++
T Consensus 398 ~~v~~av~~lm 408 (451)
T PLN02410 398 GAVERAVKRLM 408 (451)
T ss_pred HHHHHHHHHHH
Confidence 77777777776
No 2
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.8e-59 Score=433.62 Aligned_cols=381 Identities=31% Similarity=0.514 Sum_probs=287.0
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCCCCCCCCCCCCCCHHHH
Q 016062 4 QGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS----NHPDFTFLPLSDGSSSTPKASDDFIDF 79 (396)
Q Consensus 4 m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~----~~~gi~~~~~~~~~~~~~~~~~~~~~~ 79 (396)
|.. +.||+++|+|++||++||+.||+.|+.+|++||+++++.+..... ...+++++.+|++.+++. ..++..+
T Consensus 3 ~~~-~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~l 79 (448)
T PLN02562 3 VTQ-RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFSI 79 (448)
T ss_pred CCC-CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHHH
Confidence 777 679999999999999999999999999999999999977653222 113799999998765322 2234444
Q ss_pred HHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCC-
Q 016062 80 MSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPD- 158 (396)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~- 158 (396)
...+...+...++++++++.... +++|||+|.+..|+..+|+++|||.+.|+++++..++.+.+.+.....+..+..+
T Consensus 80 ~~a~~~~~~~~l~~ll~~l~~~~-pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 80 ENSMENTMPPQLERLLHKLDEDG-EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHHHhchHHHHHHHHHhcCCC-CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 44444467777778777764322 4589999999999999999999999999999887666655444322222221111
Q ss_pred -C--cccccCCCCCCCCCCCCCCCcCCC--CCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhh----CCCCeE
Q 016062 159 -S--KLLELVPGLDPLRFKDLPASSFGN--LSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQ----YPVPIF 228 (396)
Q Consensus 159 -~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~----~~~pv~ 228 (396)
. .....+++++.++..+++...... .....+.+.. .+...+++.+++||+.++|+..++..... ..++++
T Consensus 159 ~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~ 238 (448)
T PLN02562 159 PRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQIL 238 (448)
T ss_pred cccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEE
Confidence 0 011135666666667776532211 2222444444 66677789999999999999877766532 235699
Q ss_pred EecccccCCCCC--CCCccccCchhhhhhccCCCCeEEEEEcCccc-cCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCC
Q 016062 229 SIGPMHLAAPAS--SCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIA-LTGEKELAEMAWGLANSKQPFLWVLRPGSADGL 305 (396)
Q Consensus 229 ~vGp~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 305 (396)
.|||++...... ....++.+.++.+||+++++++||||||||+. .++.+++++++.++++.+++|||++..+..
T Consensus 239 ~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~--- 315 (448)
T PLN02562 239 QIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR--- 315 (448)
T ss_pred EecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch---
Confidence 999998654211 01223555568899999878899999999986 578999999999999999999999975321
Q ss_pred CCCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc---------
Q 016062 306 DPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS--------- 376 (396)
Q Consensus 306 ~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~--------- 376 (396)
+.+|++++++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 316 ---~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g 392 (448)
T PLN02562 316 ---EGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIG 392 (448)
T ss_pred ---hhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCce
Confidence 23889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCCCCcHHHHHHHHHHHh
Q 016062 377 -RKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 377 -~~~~~~~~~l~~~~~~il 394 (396)
..++.+.+++.++|++++
T Consensus 393 ~~~~~~~~~~l~~~v~~~l 411 (448)
T PLN02562 393 VRISGFGQKEVEEGLRKVM 411 (448)
T ss_pred eEeCCCCHHHHHHHHHHHh
Confidence 223466777888887776
No 3
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.3e-57 Score=423.68 Aligned_cols=384 Identities=26% Similarity=0.417 Sum_probs=278.7
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-----CCCCceEEeCC----CCCCCCCCCCC
Q 016062 4 QGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS-----NHPDFTFLPLS----DGSSSTPKASD 74 (396)
Q Consensus 4 m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~-----~~~gi~~~~~~----~~~~~~~~~~~ 74 (396)
|++ +.||+++|+|++||++||+.||+.|+.||+.||+++++.+..... ...+++++.+| ++++++.+...
T Consensus 3 ~~~-~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~ 81 (472)
T PLN02670 3 REE-VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESST 81 (472)
T ss_pred CCC-CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCccccc
Confidence 556 689999999999999999999999999999999999987653322 11368999998 56665543333
Q ss_pred CHH----HHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhh
Q 016062 75 DFI----DFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLE 150 (396)
Q Consensus 75 ~~~----~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 150 (396)
+.. ..+....+.+...++++++++ +++|||+|.++.|+..+|+++|||.+.++++++...+.+.+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 82 DVPYTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 332 233334445566666665554 68999999999999999999999999999998876666543221111
Q ss_pred cCCCCCCCCcccccCCCCC------CCCCCCCCCCcC--CCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHh
Q 016062 151 QGHIPFPDSKLLELVPGLD------PLRFKDLPASSF--GNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQE 221 (396)
Q Consensus 151 ~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~ 221 (396)
.+..+...... ..++... .++..+++.... .........+.. ...+.+++++++||++++|+..++++++
T Consensus 157 ~~~~~~~~~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 157 GGDLRSTAEDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred cccCCCccccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 11111111111 0122211 123334443221 111111222223 4456678999999999999999999987
Q ss_pred hCCCCeEEecccccCC-CCCCCCcc--ccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEEC
Q 016062 222 QYPVPIFSIGPMHLAA-PASSCSLL--KEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLR 298 (396)
Q Consensus 222 ~~~~pv~~vGp~~~~~-~~~~~~~~--~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 298 (396)
.+++|++.|||+.... ........ ..++++.+||+++++++||||||||+..++.+++++++.+|++.+++|||++.
T Consensus 236 ~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r 315 (472)
T PLN02670 236 LYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLR 315 (472)
T ss_pred hhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 6567899999997531 11000111 11245999999988899999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCchhHHHHhcCCcEEE-eecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc-
Q 016062 299 PGSADGLDPTDLLPDSFKETVEKRGCIV-NWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS- 376 (396)
Q Consensus 299 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~- 376 (396)
.......+..+.+|++++++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 316 ~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 395 (472)
T PLN02670 316 NEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRL 395 (472)
T ss_pred CCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHH
Confidence 5321111112358999999988888775 99999999999999999999999999999999999999999999999998
Q ss_pred ----------c----CCCCcHHHHHHHHHHHh
Q 016062 377 ----------R----KGGSSYNLLNELVDHIM 394 (396)
Q Consensus 377 ----------~----~~~~~~~~l~~~~~~il 394 (396)
. .+..+.+++.++|++++
T Consensus 396 v~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm 427 (472)
T PLN02670 396 LHGKKLGLEVPRDERDGSFTSDSVAESVRLAM 427 (472)
T ss_pred HHHcCeeEEeeccccCCcCcHHHHHHHHHHHh
Confidence 1 13478999999999997
No 4
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4.8e-57 Score=421.25 Aligned_cols=381 Identities=29% Similarity=0.537 Sum_probs=287.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----------C---CCCceEEeCCCCCCCCCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS----------N---HPDFTFLPLSDGSSSTPKASD 74 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~----------~---~~gi~~~~~~~~~~~~~~~~~ 74 (396)
+.||+++|+|++||++||+.||+.|+.+|..||+++++.+..... . ...++|..+|++++++.+...
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 789999999999999999999999999999999999986543211 0 113667767777765543333
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCC
Q 016062 75 DFIDFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHI 154 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (396)
++..++..+...+...++++++++.....+++|||+|.++.|+..+|+++|||.+.|++++++.++.+.+++. +..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~----~~~ 162 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH----GLV 162 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh----cCC
Confidence 4545555555566777777777764322134999999999999999999999999999999987777665421 111
Q ss_pred CCCC---CcccccCCCCCCCCCCCCCCCcCC--CCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhhCCCCeE
Q 016062 155 PFPD---SKLLELVPGLDPLRFKDLPASSFG--NLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIF 228 (396)
Q Consensus 155 p~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~ 228 (396)
+... ......+++++.++.++++..... ..+...+.+.. .+...+++.+++|||.+||+..++.+++.. |++
T Consensus 163 ~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~--~v~ 240 (480)
T PLN02555 163 PFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC--PIK 240 (480)
T ss_pred CcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC--CEE
Confidence 1111 111124677777777777754321 12222333434 556678899999999999999998887643 599
Q ss_pred EecccccCCCC--C--CCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCC
Q 016062 229 SIGPMHLAAPA--S--SCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADG 304 (396)
Q Consensus 229 ~vGp~~~~~~~--~--~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 304 (396)
.|||+...... . .......++++.+||+++++++||||||||+..++.+++++++.++++.+++|||+++.....+
T Consensus 241 ~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~ 320 (480)
T PLN02555 241 PVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDS 320 (480)
T ss_pred EeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccc
Confidence 99999753211 0 0111233456999999987789999999999999999999999999999999999987432110
Q ss_pred CCCCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc--------
Q 016062 305 LDPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS-------- 376 (396)
Q Consensus 305 ~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~-------- 376 (396)
....+.+|+++.++.++|+++++|+||.+||.|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 321 ~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gv 400 (480)
T PLN02555 321 GVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKT 400 (480)
T ss_pred cchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCc
Confidence 000134889999899999999999999999999999999999999999999999999999999999999999
Q ss_pred ----c-----CCCCcHHHHHHHHHHHh
Q 016062 377 ----R-----KGGSSYNLLNELVDHIM 394 (396)
Q Consensus 377 ----~-----~~~~~~~~l~~~~~~il 394 (396)
+ .+..+.+++.++|++++
T Consensus 401 Gv~l~~~~~~~~~v~~~~v~~~v~~vm 427 (480)
T PLN02555 401 GVRLCRGEAENKLITREEVAECLLEAT 427 (480)
T ss_pred eEEccCCccccCcCcHHHHHHHHHHHh
Confidence 1 12357888999998887
No 5
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-56 Score=414.75 Aligned_cols=385 Identities=27% Similarity=0.469 Sum_probs=279.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEe--CCCCCC-------CC-CCCCCceEEeCCCCCCCCC--CCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRG--FSITVAH--AQFNSP-------HA-SNHPDFTFLPLSDGSSSTP--KASD 74 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rG--H~Vt~~~--~~~~~~-------~~-~~~~gi~~~~~~~~~~~~~--~~~~ 74 (396)
+||+++|++++||++||+.||+.|+.+| +.||+.. ++.+.. .. ...++++++.+|+..+... ....
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 83 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSRH 83 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccccc
Confidence 7999999999999999999999999998 5666644 433211 11 1124699999997653222 2112
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCC
Q 016062 75 DFIDFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHI 154 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (396)
+....+..+...+...+.++++++... .+++|||+|.++.|+..+|+++|||.+.|++++++.++.+.+.+........
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~l~~~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 162 (451)
T PLN03004 84 HHESLLLEILCFSNPSVHRTLFSLSRN-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPG 162 (451)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHhcCCC-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccccc
Confidence 333334334456666677777776322 1459999999999999999999999999999999887777654422111000
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCcCCCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhhCC-CCeEEecc
Q 016062 155 PFPDSKLLELVPGLDPLRFKDLPASSFGNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQYP-VPIFSIGP 232 (396)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~pv~~vGp 232 (396)
+.........+++++.++..+++...........+.+.. ...+.+++.+++||++++|+..++++++... +|++.|||
T Consensus 163 ~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGP 242 (451)
T PLN03004 163 KNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYPIGP 242 (451)
T ss_pred cccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEee
Confidence 000011112466676677777775432222233344444 5556778899999999999999999877532 57999999
Q ss_pred cccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCC--CCCCC
Q 016062 233 MHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGL--DPTDL 310 (396)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~--~~~~~ 310 (396)
+........ .....++++.+||+++++++||||||||...++.+++++++.+|+..+++|||++........ .....
T Consensus 243 l~~~~~~~~-~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~ 321 (451)
T PLN03004 243 LIVNGRIED-RNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKS 321 (451)
T ss_pred eccCccccc-cccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhh
Confidence 975321100 111223459999999888999999999999999999999999999999999999985321000 01222
Q ss_pred -CchhHHHHhcC-CcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc------------
Q 016062 311 -LPDSFKETVEK-RGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS------------ 376 (396)
Q Consensus 311 -lp~~~~~~~~~-~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~------------ 376 (396)
+|+++++|..+ |+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 322 ~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l 401 (451)
T PLN03004 322 LLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISM 401 (451)
T ss_pred hCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEe
Confidence 88999998865 5566799999999999999999999999999999999999999999999999998
Q ss_pred cC---CCCcHHHHHHHHHHHhc
Q 016062 377 RK---GGSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 ~~---~~~~~~~l~~~~~~il~ 395 (396)
+. +..+.+++.++|++++.
T Consensus 402 ~~~~~~~~~~e~l~~av~~vm~ 423 (451)
T PLN03004 402 NESETGFVSSTEVEKRVQEIIG 423 (451)
T ss_pred cCCcCCccCHHHHHHHHHHHhc
Confidence 21 24588999999999873
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.5e-56 Score=414.53 Aligned_cols=368 Identities=27% Similarity=0.497 Sum_probs=282.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--CCCCceEEeCCCCCCCC-CCCCCCHHHHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS--NHPDFTFLPLSDGSSST-PKASDDFIDFMSNIN 84 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~--~~~gi~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (396)
..||+++|+|++||++||+.||+.|+.+|+.|||++++.+..... ...+++++.+|++++++ .+...+...++..+.
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~~ 84 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQNFK 84 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHHHH
Confidence 459999999999999999999999999999999999986654321 12469999999888763 233345556666666
Q ss_pred HHchHHHHHHHHHHHhcCCCc-CEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccc
Q 016062 85 LNCRAPLQEALTRMIAKQEDL-PCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLE 163 (396)
Q Consensus 85 ~~~~~~l~~~~~~l~~~~~~~-D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (396)
..+...++++++++.... +| +|||+|.+..|+..+|+++|||.+.|++++++....+.+ ... ..+ ....
T Consensus 85 ~~~~~~~~~~l~~~~~~~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~-~~~-------~~~~ 154 (449)
T PLN02173 85 TFGSKTVADIIRKHQSTD-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYI-NNG-------SLTL 154 (449)
T ss_pred HhhhHHHHHHHHHhhccC-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHh-ccC-------CccC
Confidence 677888888887764332 45 999999999999999999999999999988776544432 111 111 1112
Q ss_pred cCCCCCCCCCCCCCCCcCC--CCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCC---
Q 016062 164 LVPGLDPLRFKDLPASSFG--NLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAA--- 237 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~--- 237 (396)
.+++++.++.++++..... ........+.. .+...+++.+++||++++|+..+++++.. .+++.|||+....
T Consensus 155 ~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGPl~~~~~~~ 232 (449)
T PLN02173 155 PIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTIGPTVPSMYLD 232 (449)
T ss_pred CCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcccCchhhcc
Confidence 2455666667777654322 11123333334 56677899999999999999999988763 4799999997421
Q ss_pred -----CCC-CCCcc--ccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCC
Q 016062 238 -----PAS-SCSLL--KEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTD 309 (396)
Q Consensus 238 -----~~~-~~~~~--~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 309 (396)
... ..... ..++++.+||+.+++++||||||||+...+.+++.+++.+| .+.+|+|++..... +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~~------~ 304 (449)
T PLN02173 233 QQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASEE------S 304 (449)
T ss_pred ccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccch------h
Confidence 000 00011 23445999999988889999999999999999999999999 56789999975321 2
Q ss_pred CCchhHHHHh-cCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc------------
Q 016062 310 LLPDSFKETV-EKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS------------ 376 (396)
Q Consensus 310 ~lp~~~~~~~-~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~------------ 376 (396)
.+|+++.++. ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 305 ~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v 384 (449)
T PLN02173 305 KLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRV 384 (449)
T ss_pred cccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEE
Confidence 3888988887 688999999999999999999999999999999999999999999999999999999
Q ss_pred c---C-CCCcHHHHHHHHHHHhc
Q 016062 377 R---K-GGSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 ~---~-~~~~~~~l~~~~~~il~ 395 (396)
. . +-.+.+++.+++++++.
T Consensus 385 ~~~~~~~~~~~e~v~~av~~vm~ 407 (449)
T PLN02173 385 KAEKESGIAKREEIEFSIKEVME 407 (449)
T ss_pred eecccCCcccHHHHHHHHHHHhc
Confidence 1 1 12588999999999873
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3.8e-56 Score=414.08 Aligned_cols=377 Identities=30% Similarity=0.490 Sum_probs=276.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCCCCCCC----CCCCCceEEeCCC----CCCCCCCCCCCHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILH-SRGFSITVAHAQFNSPHA----SNHPDFTFLPLSD----GSSSTPKASDDFID 78 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~-~rGH~Vt~~~~~~~~~~~----~~~~gi~~~~~~~----~~~~~~~~~~~~~~ 78 (396)
+.||+++|+|++||++|++.||+.|+ ++|+.||+++++.+.... ....+++++.+|. ++++.. .+...
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~~~ 81 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHVVT 81 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccHHH
Confidence 67999999999999999999999998 789999999998664321 1223689999884 222111 12222
Q ss_pred HHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCC
Q 016062 79 FMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPD 158 (396)
Q Consensus 79 ~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 158 (396)
.+..........++++++++. . +|++||+|.++.|+..+|+++|||.+.|+++++..++.+.+.+........+...
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~--~-~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~ 158 (481)
T PLN02992 82 KIGVIMREAVPTLRSKIAEMH--Q-KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTV 158 (481)
T ss_pred HHHHHHHHhHHHHHHHHHhcC--C-CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccccc
Confidence 222233344455555555541 1 6899999999999999999999999999999887766555443211110001000
Q ss_pred CcccccCCCCCCCCCCCCCCCcCCCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhh--C----CCCeEEec
Q 016062 159 SKLLELVPGLDPLRFKDLPASSFGNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQ--Y----PVPIFSIG 231 (396)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~----~~pv~~vG 231 (396)
......+++++.++..+++.............+.. .....+++.+++||+.+||+..+++++.. + .+|++.||
T Consensus 159 ~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VG 238 (481)
T PLN02992 159 QRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIG 238 (481)
T ss_pred CCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEec
Confidence 11112356666666666664322222223344444 55667899999999999999999988642 1 25799999
Q ss_pred ccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCC--------
Q 016062 232 PMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSAD-------- 303 (396)
Q Consensus 232 p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-------- 303 (396)
|+...... . ..++++.+||+++++++||||||||...++.+++++++.+|++.+++|||++......
T Consensus 239 Pl~~~~~~---~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~ 313 (481)
T PLN02992 239 PLCRPIQS---S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFS 313 (481)
T ss_pred CccCCcCC---C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccccccccccc
Confidence 99753211 1 2345699999998889999999999999999999999999999999999999642100
Q ss_pred ------CCCCCCCCchhHHHHhcCCcEE-EeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc
Q 016062 304 ------GLDPTDLLPDSFKETVEKRGCI-VNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS 376 (396)
Q Consensus 304 ------~~~~~~~lp~~~~~~~~~~~~~-~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 376 (396)
..+..+.+|+++++|..++..+ .+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 314 ~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~ 393 (481)
T PLN02992 314 ANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAA 393 (481)
T ss_pred CcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHH
Confidence 0001234899999998766655 599999999999999999999999999999999999999999999999999
Q ss_pred ------------cC--CCCcHHHHHHHHHHHhc
Q 016062 377 ------------RK--GGSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 ------------~~--~~~~~~~l~~~~~~il~ 395 (396)
+. +..+.+++.++|++++.
T Consensus 394 ~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~ 426 (481)
T PLN02992 394 LLSDELGIAVRSDDPKEVISRSKIEALVRKVMV 426 (481)
T ss_pred HHHHHhCeeEEecCCCCcccHHHHHHHHHHHhc
Confidence 22 34789999999999873
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4e-56 Score=418.30 Aligned_cols=374 Identities=30% Similarity=0.522 Sum_probs=281.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCC---CCCceEEeCCCCCCCCCCCCCCHHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHAQFNSPHASN---HPDFTFLPLSDGSSSTPKASDDFIDFMSN 82 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~~~~~~~~~~---~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
+.||+++|+|++||++|++.||++|++| ||+||+++++.+...... ..+++|+.+|++.++......+...++..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~~~~~ 89 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPGFLEA 89 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHHHHHH
Confidence 6899999999999999999999999999 999999999876543332 14899999997655543333455555555
Q ss_pred HHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCC----
Q 016062 83 INLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPD---- 158 (396)
Q Consensus 83 ~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---- 158 (396)
+.+.+...++++++++. . ++||||+|.++.|+..+|+++|||++.++++++..++.+.+.+.....+..|...
T Consensus 90 ~~~~~~~~~~~~l~~~~--~-~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (459)
T PLN02448 90 VMTKMEAPFEQLLDRLE--P-PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSESG 166 (459)
T ss_pred HHHHhHHHHHHHHHhcC--C-CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCcccccc
Confidence 55556667777776653 2 6899999999999999999999999999999987666555543322111112111
Q ss_pred CcccccCCCCCCCCCCCCCCCcCCCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCC
Q 016062 159 SKLLELVPGLDPLRFKDLPASSFGNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAA 237 (396)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~ 237 (396)
......++++..++..+++...........+.+.. .....+++.+++||+++||+..++++++.++.+++.|||+....
T Consensus 167 ~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~ 246 (459)
T PLN02448 167 EERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYM 246 (459)
T ss_pred CCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEecCccccc
Confidence 01111255555556666664432222222333444 55567788999999999999989999887767899999997532
Q ss_pred CC--CCCC-cc-ccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCch
Q 016062 238 PA--SSCS-LL-KEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPD 313 (396)
Q Consensus 238 ~~--~~~~-~~-~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~ 313 (396)
.. .... .. +.+.++.+|++.++++++|||||||+.....++++++++||++.+++|||++... ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~-----------~~ 315 (459)
T PLN02448 247 ELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE-----------AS 315 (459)
T ss_pred ccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc-----------hh
Confidence 11 0000 01 1223589999998788999999999988889999999999999999999987542 12
Q ss_pred hHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc------------c----
Q 016062 314 SFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS------------R---- 377 (396)
Q Consensus 314 ~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~------------~---- 377 (396)
++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+ .
T Consensus 316 ~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~ 395 (459)
T PLN02448 316 RLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVG 395 (459)
T ss_pred hHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccc
Confidence 344455678999999999999999999999999999999999999999999999999999999 1
Q ss_pred -CCCCcHHHHHHHHHHHhc
Q 016062 378 -KGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 378 -~~~~~~~~l~~~~~~il~ 395 (396)
.+..+.+++++++++++.
T Consensus 396 ~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 396 EETLVGREEIAELVKRFMD 414 (459)
T ss_pred cCCcCcHHHHHHHHHHHhc
Confidence 123588999999999983
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.5e-56 Score=415.66 Aligned_cols=383 Identities=25% Similarity=0.381 Sum_probs=272.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCCC----CCCCCCCCCCCHH--
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS----NHPDFTFLPLSD----GSSSTPKASDDFI-- 77 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~----~~~gi~~~~~~~----~~~~~~~~~~~~~-- 77 (396)
+.||+++|+|++||++||+.||+.|+.+|+.|||++++.+..... ...+++++.+|- +++++.+...++.
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~~ 88 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLPPS 88 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcchh
Confidence 689999999999999999999999999999999999987753221 123578776552 3444443322221
Q ss_pred --HHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCC
Q 016062 78 --DFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIP 155 (396)
Q Consensus 78 --~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 155 (396)
..+......+.+.+.++++++ ..+++|||+|.+..|+..+|+++|||.+.|++++++.++.+.++....+....+
T Consensus 89 ~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~ 165 (477)
T PLN02863 89 GFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINP 165 (477)
T ss_pred hHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccccc
Confidence 122222223333344444432 126799999999999999999999999999999998887776643211111001
Q ss_pred CCCC-cc-cccCCCCCCCCCCCCCCCcCC--CCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhhCC-CCeEE
Q 016062 156 FPDS-KL-LELVPGLDPLRFKDLPASSFG--NLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQYP-VPIFS 229 (396)
Q Consensus 156 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~pv~~ 229 (396)
.... .. ...+++++.++.++++..... ..+...+.+.. ......++++++||++++|+..++++++.++ ++++.
T Consensus 166 ~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~ 245 (477)
T PLN02863 166 DDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVWA 245 (477)
T ss_pred cccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeEE
Confidence 1100 11 123566666677776643211 12223333333 4445567889999999999999999988665 57999
Q ss_pred ecccccCCC-C----CC-CCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCC
Q 016062 230 IGPMHLAAP-A----SS-CSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSAD 303 (396)
Q Consensus 230 vGp~~~~~~-~----~~-~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 303 (396)
|||+..... . .. .+....++++.+||+.+++++||||||||+...+.+++++++.+|++.+++|||+++.....
T Consensus 246 IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~ 325 (477)
T PLN02863 246 VGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNE 325 (477)
T ss_pred eCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCccc
Confidence 999975321 0 00 01111245699999998888999999999999999999999999999999999999854211
Q ss_pred CCCCCCCCchhHHHHhc-CCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc------
Q 016062 304 GLDPTDLLPDSFKETVE-KRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS------ 376 (396)
Q Consensus 304 ~~~~~~~lp~~~~~~~~-~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~------ 376 (396)
. .....+|++++++.. .++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 326 ~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 404 (477)
T PLN02863 326 E-SDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDEL 404 (477)
T ss_pred c-cchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhh
Confidence 1 012348899988765 45556699999999999999999999999999999999999999999999999998
Q ss_pred ------cC---CCCcHHHHHHHHHHHh
Q 016062 377 ------RK---GGSSYNLLNELVDHIM 394 (396)
Q Consensus 377 ------~~---~~~~~~~l~~~~~~il 394 (396)
.. +..+.+++.+++.+++
T Consensus 405 gvG~~~~~~~~~~~~~~~v~~~v~~~m 431 (477)
T PLN02863 405 KVAVRVCEGADTVPDSDELARVFMESV 431 (477)
T ss_pred ceeEEeccCCCCCcCHHHHHHHHHHHh
Confidence 11 1235677777776654
No 10
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-55 Score=408.77 Aligned_cols=382 Identities=24% Similarity=0.433 Sum_probs=279.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCCCCC-C----C----CCCCCceEEeCCCCCC-CCCCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRG--FSITVAHAQFNSP-H----A----SNHPDFTFLPLSDGSS-STPKASDD 75 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--H~Vt~~~~~~~~~-~----~----~~~~gi~~~~~~~~~~-~~~~~~~~ 75 (396)
+.||+++|+|++||++|++.||+.|+.+| ..||+++++.+.. . . ...++++|+.+|+... .......+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 82 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQS 82 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccC
Confidence 36999999999999999999999999998 9999999976541 0 1 1124699999995432 11111234
Q ss_pred HHHHHHHHHHHchHHHHHHHHHHHh----cCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhc
Q 016062 76 FIDFMSNINLNCRAPLQEALTRMIA----KQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQ 151 (396)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 151 (396)
....+..+...+...+++.++++.. ...+++|||+|.++.|+..+|+++|||.+.|+++++...+.+.+.+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~ 162 (468)
T PLN02207 83 VEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSK 162 (468)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcccc
Confidence 4434433444554444444444432 111248999999999999999999999999999998877766654422111
Q ss_pred -CCCCCCCCcccccCCCC-CCCCCCCCCCCcCCCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHh-hCCCCe
Q 016062 152 -GHIPFPDSKLLELVPGL-DPLRFKDLPASSFGNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQE-QYPVPI 227 (396)
Q Consensus 152 -~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~-~~~~pv 227 (396)
...+....+....++++ +.++..+++...... .. ...+.. .....+++.+++||++++|++.++..+. ...+++
T Consensus 163 ~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~-~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v 240 (468)
T PLN02207 163 DTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVE-DG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYPSV 240 (468)
T ss_pred ccccCcCCCCCeEECCCCCCCCChHHCcchhcCC-cc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCCcE
Confidence 11111011111246776 467777776543211 12 333334 5567889999999999999998888754 233569
Q ss_pred EEecccccCCCCCCCC-ccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCC
Q 016062 228 FSIGPMHLAAPASSCS-LLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLD 306 (396)
Q Consensus 228 ~~vGp~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 306 (396)
+.|||++........+ ....++++.+||+++++++||||||||...++.+++++++.||++.+++|||+++......
T Consensus 241 ~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~-- 318 (468)
T PLN02207 241 YAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTN-- 318 (468)
T ss_pred EEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccc--
Confidence 9999998643210000 0112356999999988889999999999999999999999999999999999998532111
Q ss_pred CCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc----------
Q 016062 307 PTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS---------- 376 (396)
Q Consensus 307 ~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~---------- 376 (396)
.+.+|++++++.++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 319 -~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv 397 (468)
T PLN02207 319 -DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAV 397 (468)
T ss_pred -cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceE
Confidence 134899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --c------C-CCCcHHHHHHHHHHHh
Q 016062 377 --R------K-GGSSYNLLNELVDHIM 394 (396)
Q Consensus 377 --~------~-~~~~~~~l~~~~~~il 394 (396)
. . +-.+.+++.++|++++
T Consensus 398 ~~~~~~~~~~~~~v~~e~i~~av~~vm 424 (468)
T PLN02207 398 ELKLDYRVHSDEIVNANEIETAIRCVM 424 (468)
T ss_pred EEecccccccCCcccHHHHHHHHHHHH
Confidence 1 0 1247889999999887
No 11
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1e-55 Score=409.65 Aligned_cols=375 Identities=29% Similarity=0.454 Sum_probs=283.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCCC-CC-CC---CCCCceEEeCCCCCCCCCC-CCCCHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFNS-PH-AS---NHPDFTFLPLSDGSSSTPK-ASDDFIDFM 80 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~~-~~-~~---~~~gi~~~~~~~~~~~~~~-~~~~~~~~~ 80 (396)
+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+. .. .. ...+++|+.++++++++.+ ...+....+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~~ 82 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRL 82 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHHH
Confidence 369999999999999999999999996 69999999997542 11 11 1136999999987776532 234555566
Q ss_pred HHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCc
Q 016062 81 SNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSK 160 (396)
Q Consensus 81 ~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 160 (396)
..+...+.+.+.++++++.....+++|||+|.++.|+..+|+++|||.+.|++++++..+.+.++.... .
T Consensus 83 ~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~----------~ 152 (455)
T PLN02152 83 VNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN----------N 152 (455)
T ss_pred HHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----------C
Confidence 666678888888888876533224599999999999999999999999999999998777665532110 0
Q ss_pred ccccCCCCCCCCCCCCCCCcCCC--CCchHHHHHH-hhhcC--CccEEEEccccccchhHHHHHHhhCCCCeEEeccccc
Q 016062 161 LLELVPGLDPLRFKDLPASSFGN--LSTLLPFTAI-LRDIG--SSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHL 235 (396)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~--~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~ 235 (396)
....+++++.++.++++...... .......+.. .+... .++.+++||+++||+..+++++. .+++.|||+..
T Consensus 153 ~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~VGPL~~ 229 (455)
T PLN02152 153 SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVAVGPLLP 229 (455)
T ss_pred CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEEEcccCc
Confidence 11235666666667776543211 2222334333 33332 24699999999999999888865 37999999975
Q ss_pred CCC--CCC-CC--cc-ccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCC-----C
Q 016062 236 AAP--ASS-CS--LL-KEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSAD-----G 304 (396)
Q Consensus 236 ~~~--~~~-~~--~~-~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~-----~ 304 (396)
... ... .. .+ ..+.++.+||+++++++||||||||...++.+++++++.+|++.+++|||++...... +
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~ 309 (455)
T PLN02152 230 AEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEG 309 (455)
T ss_pred cccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccccccccc
Confidence 321 100 01 11 2234699999998888999999999999999999999999999999999999853211 0
Q ss_pred C-CCCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc-------
Q 016062 305 L-DPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS------- 376 (396)
Q Consensus 305 ~-~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~------- 376 (396)
. +..-.+|++++++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 310 ~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~ 389 (455)
T PLN02152 310 EEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWK 389 (455)
T ss_pred ccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhC
Confidence 0 00012578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------cCC-CCcHHHHHHHHHHHhc
Q 016062 377 -------RKG-GSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 -------~~~-~~~~~~l~~~~~~il~ 395 (396)
..+ ..+.+++.++|+++++
T Consensus 390 ~G~~~~~~~~~~~~~e~l~~av~~vm~ 416 (455)
T PLN02152 390 TGVRVRENSEGLVERGEIRRCLEAVME 416 (455)
T ss_pred ceEEeecCcCCcCcHHHHHHHHHHHHh
Confidence 122 3488899999999873
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-55 Score=411.86 Aligned_cols=377 Identities=27% Similarity=0.474 Sum_probs=276.4
Q ss_pred CccCCCCCcEEEEEcCCCCCCHHHHHHHHHH--HHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCCCCCCCCCCCC
Q 016062 1 MEKQGHRCRQVVLVPIPLQGHITPMLQLGTI--LHSRGFSITVAHAQFNSPHASN----HPDFTFLPLSDGSSSTPKASD 74 (396)
Q Consensus 1 ~~~m~~~~~~il~~~~~~~GH~~p~l~la~~--L~~rGH~Vt~~~~~~~~~~~~~----~~gi~~~~~~~~~~~~~~~~~ 74 (396)
|+.+...+.||+++|+|++||++|++.||++ |++||++|||++++.+...... ...+++..++++++++.+ .
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~ 78 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--R 78 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--c
Confidence 4333333679999999999999999999999 5699999999999876543221 235788877877766542 2
Q ss_pred CHHHHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCC
Q 016062 75 DFIDFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHI 154 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (396)
+...++..+.+.+...+.+++++ . ++|+||+|.+..|+..+|+++|||.+.|+++++..++.+.++.... ...
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~----~-~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~~ 151 (456)
T PLN02210 79 APETLLKSLNKVGAKNLSKIIEE----K-RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NSF 151 (456)
T ss_pred CHHHHHHHHHHhhhHHHHHHHhc----C-CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CCC
Confidence 34445554444454444444443 2 7999999999999999999999999999988887766655432111 111
Q ss_pred CCCCC-cccccCCCCCCCCCCCCCCCcCCCCCchH-HHHHH-hhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEec
Q 016062 155 PFPDS-KLLELVPGLDPLRFKDLPASSFGNLSTLL-PFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIG 231 (396)
Q Consensus 155 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vG 231 (396)
+.... .-...+++++.++.++++........... ..... .+....++.+++||+.++|+..++++++ . +++++||
T Consensus 152 ~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~v~~VG 229 (456)
T PLN02210 152 PDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KPVIPIG 229 (456)
T ss_pred CcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CCEEEEc
Confidence 11110 01123555655666666654322222222 22223 3445678899999999999999998876 3 5799999
Q ss_pred ccccC----CCCC---CC---CccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCC
Q 016062 232 PMHLA----APAS---SC---SLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGS 301 (396)
Q Consensus 232 p~~~~----~~~~---~~---~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 301 (396)
|+... .... .. .....++++.+||+++++++||||||||....+.+++++++.||+..+.+|||+++...
T Consensus 230 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~ 309 (456)
T PLN02210 230 PLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE 309 (456)
T ss_pred ccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 99742 1100 00 01234556899999988889999999999999999999999999999999999997532
Q ss_pred CCCCCCCCCCchhHHHHh-cCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc----
Q 016062 302 ADGLDPTDLLPDSFKETV-EKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS---- 376 (396)
Q Consensus 302 ~~~~~~~~~lp~~~~~~~-~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~---- 376 (396)
. ...++.++++. ++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 310 ~------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~ 383 (456)
T PLN02210 310 K------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVD 383 (456)
T ss_pred c------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHH
Confidence 1 11345566666 488889999999999999999999999999999999999999999999999999999
Q ss_pred --------c----CCCCcHHHHHHHHHHHh
Q 016062 377 --------R----KGGSSYNLLNELVDHIM 394 (396)
Q Consensus 377 --------~----~~~~~~~~l~~~~~~il 394 (396)
. .+..+.+++.++|++++
T Consensus 384 ~~g~G~~l~~~~~~~~~~~~~l~~av~~~m 413 (456)
T PLN02210 384 VFGIGVRMRNDAVDGELKVEEVERCIEAVT 413 (456)
T ss_pred HhCeEEEEeccccCCcCCHHHHHHHHHHHh
Confidence 1 23578999999999987
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-55 Score=409.81 Aligned_cols=372 Identities=21% Similarity=0.340 Sum_probs=268.0
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCC----CCCCCCCCCCCC
Q 016062 4 QGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN----HPDFTFLPLS----DGSSSTPKASDD 75 (396)
Q Consensus 4 m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~----~~gi~~~~~~----~~~~~~~~~~~~ 75 (396)
|+. +.||+++|+|++||++|++.||+.|+++|++||+++++.+...+.. ..+++|+.++ ++++++.+...+
T Consensus 1 ~~~-~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~ 79 (446)
T PLN00414 1 MGS-KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASD 79 (446)
T ss_pred CCC-CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCccccccc
Confidence 344 6899999999999999999999999999999999999766533321 1247785553 456555433333
Q ss_pred HHHHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCC
Q 016062 76 FIDFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIP 155 (396)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 155 (396)
+..............+...++++.... ++||||+|. +.|+..+|+++|||++.|+++++...+.+.+ +.. ... .|
T Consensus 80 l~~~~~~~~~~a~~~l~~~l~~~L~~~-~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~~-~~~-~~ 154 (446)
T PLN00414 80 LPNSTKKPIFDAMDLLRDQIEAKVRAL-KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PRA-ELG-FP 154 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cHh-hcC-CC
Confidence 321111111112223333334433333 789999995 8899999999999999999999877666554 110 000 00
Q ss_pred CCCCcccccCCCCCC----CCCCCCCCCcCCCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEe
Q 016062 156 FPDSKLLELVPGLDP----LRFKDLPASSFGNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSI 230 (396)
Q Consensus 156 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~v 230 (396)
+++++. ++..+..... ........+.. .+...+++.+++||+.++|+..+++.+..++++++.|
T Consensus 155 ---------~pg~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~V 223 (446)
T PLN00414 155 ---------PPDYPLSKVALRGHDANVCS--LFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLT 223 (446)
T ss_pred ---------CCCCCCCcCcCchhhcccch--hhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEE
Confidence 111111 1111111000 00011223333 4556778999999999999999999887655679999
Q ss_pred cccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCC
Q 016062 231 GPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDL 310 (396)
Q Consensus 231 Gp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 310 (396)
||+....... .....++++.+|||.+++++||||||||......+++.++..+|+..+.+|+|++......+. ..+.
T Consensus 224 GPl~~~~~~~--~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~-~~~~ 300 (446)
T PLN00414 224 GPMLPEPQNK--SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSST-VQEA 300 (446)
T ss_pred cccCCCcccc--cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCccc-chhh
Confidence 9997533210 111123459999999999999999999999999999999999999999999999986422111 1135
Q ss_pred CchhHHHHhcCCcEEE-eecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc------------c
Q 016062 311 LPDSFKETVEKRGCIV-NWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS------------R 377 (396)
Q Consensus 311 lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~------------~ 377 (396)
+|++++++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+ +
T Consensus 301 lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~ 380 (446)
T PLN00414 301 LPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQ 380 (446)
T ss_pred CChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEec
Confidence 8999999999999887 89999999999999999999999999999999999999999999999999 2
Q ss_pred C---CCCcHHHHHHHHHHHhc
Q 016062 378 K---GGSSYNLLNELVDHIMS 395 (396)
Q Consensus 378 ~---~~~~~~~l~~~~~~il~ 395 (396)
. +..+.++++++++++++
T Consensus 381 ~~~~~~~~~~~i~~~v~~~m~ 401 (446)
T PLN00414 381 REDSGWFSKESLRDTVKSVMD 401 (446)
T ss_pred cccCCccCHHHHHHHHHHHhc
Confidence 2 23799999999999873
No 14
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-55 Score=409.89 Aligned_cols=363 Identities=21% Similarity=0.324 Sum_probs=261.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC----CCceEEeCC----CCCCCCCCCCCCHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNH----PDFTFLPLS----DGSSSTPKASDDFIDF 79 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~----~gi~~~~~~----~~~~~~~~~~~~~~~~ 79 (396)
+.||+++|+|++||++|++.||+.|++|||+|||++++.+....... .++++..++ ++++++.+...++...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~ 83 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPIS 83 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhHH
Confidence 78999999999999999999999999999999999987655433211 245566553 3455554333333222
Q ss_pred HHHH----HHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCC
Q 016062 80 MSNI----NLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIP 155 (396)
Q Consensus 80 ~~~~----~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 155 (396)
+..+ ...+.+.++++++.+ ++||||+| ++.|+..+|+++|||++.|+++++...+ +.+.+. ....
T Consensus 84 l~~~~~~~~~~~~~~l~~~L~~~-----~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~~~ 152 (442)
T PLN02208 84 MDNLLSEALDLTRDQVEAAVRAL-----RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GKLG 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----cccC
Confidence 2222 223333344444333 68999999 5789999999999999999999887543 333221 0000
Q ss_pred CCCCcccccCCCCCC----CCCCCCCCCcCCCCCchHHHHHH--hhhcCCccEEEEccccccchhHHHHHHhhCCCCeEE
Q 016062 156 FPDSKLLELVPGLDP----LRFKDLPASSFGNLSTLLPFTAI--LRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFS 229 (396)
Q Consensus 156 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~ 229 (396)
..+++++. ++..+++.. .........+.. .+...+++.+++||+.++|+..++++++.+.++++.
T Consensus 153 -------~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~ 223 (442)
T PLN02208 153 -------VPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLL 223 (442)
T ss_pred -------CCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEE
Confidence 01223321 233333321 111122222222 245667899999999999999999988766678999
Q ss_pred ecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCC
Q 016062 230 IGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTD 309 (396)
Q Consensus 230 vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 309 (396)
|||++..... ...+ ++++.+||+.+++++||||||||+..++.+++.+++.+++..+.+++|+++.....+ +..+
T Consensus 224 vGpl~~~~~~--~~~~--~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~-~~~~ 298 (442)
T PLN02208 224 TGPMFPEPDT--SKPL--EEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS-TVQE 298 (442)
T ss_pred EeecccCcCC--CCCC--HHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc-chhh
Confidence 9999865321 0122 345999999988889999999999999999999999998888899999988542111 1123
Q ss_pred CCchhHHHHhcC-CcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc------------
Q 016062 310 LLPDSFKETVEK-RGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS------------ 376 (396)
Q Consensus 310 ~lp~~~~~~~~~-~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~------------ 376 (396)
.+|++++++..+ |+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 299 ~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~ 378 (442)
T PLN02208 299 GLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEV 378 (442)
T ss_pred hCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEe
Confidence 589999998765 5555599999999999999999999999999999999999999999999999999
Q ss_pred cCC---CCcHHHHHHHHHHHhc
Q 016062 377 RKG---GSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 ~~~---~~~~~~l~~~~~~il~ 395 (396)
+.+ -.+.+++.++|++++.
T Consensus 379 ~~~~~~~~~~~~l~~ai~~~m~ 400 (442)
T PLN02208 379 SREKTGWFSKESLSNAIKSVMD 400 (442)
T ss_pred ccccCCcCcHHHHHHHHHHHhc
Confidence 222 2789999999999873
No 15
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3.3e-55 Score=404.22 Aligned_cols=369 Identities=21% Similarity=0.366 Sum_probs=271.1
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC---CC-C--ceEEeCC--CCCCCCCCCCCC
Q 016062 4 QGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN---HP-D--FTFLPLS--DGSSSTPKASDD 75 (396)
Q Consensus 4 m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~---~~-g--i~~~~~~--~~~~~~~~~~~~ 75 (396)
|++.+.||+++|++++||++|++.||+.|+.+|+.||+++++.+...... .. + +.++++| ++++++.+...+
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~ 80 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSE 80 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCccccccc
Confidence 45557899999999999999999999999999999999999876432221 11 2 6677777 566555333222
Q ss_pred HH-H---HHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhc
Q 016062 76 FI-D---FMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQ 151 (396)
Q Consensus 76 ~~-~---~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 151 (396)
+. . .+......+...+.++++++ ++||||+|. ..|+..+|+++|||.+.|+++++..++.+.. +.
T Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~---- 149 (453)
T PLN02764 81 IPVTSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG---- 149 (453)
T ss_pred CChhHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----
Confidence 21 1 12222223344455555443 689999995 8899999999999999999999876666542 10
Q ss_pred CCCCCCCCcccccCCCCC----CCCCCCCCCCcC----CCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhh
Q 016062 152 GHIPFPDSKLLELVPGLD----PLRFKDLPASSF----GNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQ 222 (396)
Q Consensus 152 ~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 222 (396)
...+ ..+++++ .++.++++.... ...+....++.. .+...+++.+++||++++|+..+++++..
T Consensus 150 ~~~~-------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 150 GELG-------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred ccCC-------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 1110 0112222 123333332100 011122233333 35567788999999999999999998775
Q ss_pred CCCCeEEecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCC
Q 016062 223 YPVPIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSA 302 (396)
Q Consensus 223 ~~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 302 (396)
.+++++.|||+...... . -..++++.+|||.+++++||||||||+...+.+++.++..+|+..+.+++|+++....
T Consensus 223 ~~~~v~~VGPL~~~~~~---~-~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~ 298 (453)
T PLN02764 223 CRKKVLLTGPVFPEPDK---T-RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRG 298 (453)
T ss_pred cCCcEEEeccCccCccc---c-ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 45679999999753211 1 0123469999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCCCCCchhHHHHhcCCcEEE-eecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc-----
Q 016062 303 DGLDPTDLLPDSFKETVEKRGCIV-NWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS----- 376 (396)
Q Consensus 303 ~~~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~----- 376 (396)
.+. ..+.+|+++++|..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 299 ~~~-~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~ 377 (453)
T PLN02764 299 SST-IQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE 377 (453)
T ss_pred Ccc-hhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHH
Confidence 111 12359999999988877776 99999999999999999999999999999999999999999999999999
Q ss_pred -------cC---CCCcHHHHHHHHHHHhc
Q 016062 377 -------RK---GGSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 -------~~---~~~~~~~l~~~~~~il~ 395 (396)
.. +..+.+++.++++++++
T Consensus 378 ~g~gv~~~~~~~~~~~~e~i~~av~~vm~ 406 (453)
T PLN02764 378 LKVSVEVAREETGWFSKESLRDAINSVMK 406 (453)
T ss_pred hceEEEeccccCCccCHHHHHHHHHHHhc
Confidence 11 24688999999999873
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.9e-55 Score=410.92 Aligned_cols=380 Identities=30% Similarity=0.480 Sum_probs=276.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------C---CC--CCCceEEeCCCCCCCCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRG--FSITVAHAQFNSPH-------A---SN--HPDFTFLPLSDGSSSTPKAS 73 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rG--H~Vt~~~~~~~~~~-------~---~~--~~gi~~~~~~~~~~~~~~~~ 73 (396)
|.||+++|+|++||++||+.||+.|+.+| ..||+++++.+... . .. ..+++++.+|++...... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE-D 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc-c
Confidence 46999999999999999999999999998 88999999766431 1 11 236999999876542211 1
Q ss_pred CCHHHHHHHHHHHchHHHHHHHHHHHhc----CCC-cCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhh
Q 016062 74 DDFIDFMSNINLNCRAPLQEALTRMIAK----QED-LPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRL 148 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~-~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 148 (396)
..+.. +...+...+++.++++... ..+ .+|||+|.++.|+..+|+++|||++.|+++++..++.+.+.+..
T Consensus 81 ~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~ 156 (481)
T PLN02554 81 PTFQS----YIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQML 156 (481)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhh
Confidence 12222 2234444555555554321 112 38999999999999999999999999999999888777765432
Q ss_pred hhcCCCCCC---CCcccccCCCCC-CCCCCCCCCCcCCCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhh-
Q 016062 149 LEQGHIPFP---DSKLLELVPGLD-PLRFKDLPASSFGNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQ- 222 (396)
Q Consensus 149 ~~~~~~p~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~- 222 (396)
......+.. +......++++. .++..+++..... +...+.+.. ...+.+++++++||+.++|......+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~ 234 (481)
T PLN02554 157 YDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSS 234 (481)
T ss_pred ccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcc
Confidence 211101111 111112356652 4566666543211 123334444 56677899999999999999888888753
Q ss_pred -CCCCeEEecccc-cCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCC
Q 016062 223 -YPVPIFSIGPMH-LAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPG 300 (396)
Q Consensus 223 -~~~pv~~vGp~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 300 (396)
..++++.|||+. ...+. .....+.++++.+||+++++++||||||||+...+.+++++++.||++.+++|||+++..
T Consensus 235 ~~~~~v~~vGpl~~~~~~~-~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~ 313 (481)
T PLN02554 235 GDLPPVYPVGPVLHLENSG-DDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRA 313 (481)
T ss_pred cCCCCEEEeCCCccccccc-cccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 225799999994 33221 000012234599999998788999999999988999999999999999999999999753
Q ss_pred CC------CC--CCCCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccc
Q 016062 301 SA------DG--LDPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQK 372 (396)
Q Consensus 301 ~~------~~--~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~ 372 (396)
.. .+ .+..+.+|+++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+
T Consensus 314 ~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~ 393 (481)
T PLN02554 314 SPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQK 393 (481)
T ss_pred cccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccch
Confidence 11 00 00012269999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc------------cC-----------CCCcHHHHHHHHHHHhc
Q 016062 373 VNAS------------RK-----------GGSSYNLLNELVDHIMS 395 (396)
Q Consensus 373 ~na~------------~~-----------~~~~~~~l~~~~~~il~ 395 (396)
.||+ +. +..+.+.+.++|++++.
T Consensus 394 ~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 394 FNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred hhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhc
Confidence 9994 21 24688999999999873
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.3e-54 Score=409.96 Aligned_cols=385 Identities=25% Similarity=0.418 Sum_probs=270.0
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--------CC----CceEEeCC---CCCCC
Q 016062 4 QGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN--------HP----DFTFLPLS---DGSSS 68 (396)
Q Consensus 4 m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~--------~~----gi~~~~~~---~~~~~ 68 (396)
|+..+.||+++|+|++||++|++.||++|++|||+|||++++.+...+.+ .+ .+.+.++| +++++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~ 80 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE 80 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC
Confidence 34435799999999999999999999999999999999999876532211 01 23445555 34554
Q ss_pred CCCCCC--------CHHHHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHH
Q 016062 69 TPKASD--------DFIDFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLL 140 (396)
Q Consensus 69 ~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 140 (396)
+.+... ....++..+. .....+.+.++++.+.. ++|+||+|.++.|+..+|+++|||.+.|++++++..+
T Consensus 81 g~e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 81 GCENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLETT-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred CcccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhcC-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 432211 1223333333 23334445555554444 7999999999999999999999999999998887655
Q ss_pred HHhhhhhhhhcCCCCCCCCcccccCCCCC---CCCCCCCCCCcCCCCCchHHHHHH-hhhcCCccEEEEccccccchhHH
Q 016062 141 TYYAYPRLLEQGHIPFPDSKLLELVPGLD---PLRFKDLPASSFGNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSI 216 (396)
Q Consensus 141 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~ 216 (396)
....+....+....+..... ..+++++ .++..+++. ......+.+++.. .+...+++.+++||++++|+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~--~~~pg~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~ 234 (482)
T PLN03007 159 ASYCIRVHKPQKKVASSSEP--FVIPDLPGDIVITEEQIND--ADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYA 234 (482)
T ss_pred HHHHHHhcccccccCCCCce--eeCCCCCCccccCHHhcCC--CCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHH
Confidence 54432211111111100000 1133332 122222221 1122223444444 45677889999999999999988
Q ss_pred HHHHhhCCCCeEEecccccCCCCC-----CCCcc-ccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCC
Q 016062 217 VQFQEQYPVPIFSIGPMHLAAPAS-----SCSLL-KEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSK 290 (396)
Q Consensus 217 ~~~~~~~~~pv~~vGp~~~~~~~~-----~~~~~-~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~ 290 (396)
+.+++....++++|||+....... ..... ..++++.+||+++++++||||||||+...+.+.+.+++.+|+..+
T Consensus 235 ~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~ 314 (482)
T PLN03007 235 DFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSG 314 (482)
T ss_pred HHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCC
Confidence 888876656799999976432110 00111 123459999999888999999999999888999999999999999
Q ss_pred CCeEEEECCCCCCCCCCCCCCchhHHHHh-cCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccC
Q 016062 291 QPFLWVLRPGSADGLDPTDLLPDSFKETV-EKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFG 369 (396)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~ 369 (396)
++|||+++.....+ +..+.+|++++++. +.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++
T Consensus 315 ~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~ 393 (482)
T PLN03007 315 QNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGA 393 (482)
T ss_pred CCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchh
Confidence 99999998642111 11234899998876 56777789999999999999999999999999999999999999999999
Q ss_pred ccccccc------------c-------C-CCCcHHHHHHHHHHHhc
Q 016062 370 DQKVNAS------------R-------K-GGSSYNLLNELVDHIMS 395 (396)
Q Consensus 370 DQ~~na~------------~-------~-~~~~~~~l~~~~~~il~ 395 (396)
||+.||+ . + +..+.+.+.++|++++.
T Consensus 394 DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~ 439 (482)
T PLN03007 394 EQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIV 439 (482)
T ss_pred hhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhc
Confidence 9999998 1 1 23588899999998873
No 18
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=3.7e-54 Score=404.76 Aligned_cols=381 Identities=31% Similarity=0.480 Sum_probs=281.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC----CeEEEEeCCCCCC----C--------CCCCCCceEEeCCCCCCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRG----FSITVAHAQFNSP----H--------ASNHPDFTFLPLSDGSSSTPK 71 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rG----H~Vt~~~~~~~~~----~--------~~~~~gi~~~~~~~~~~~~~~ 71 (396)
+.||+++|++++||++||+.||+.|+.|| +.|||++++.+.. . .....+++++.+|+...+..
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~- 81 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD- 81 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc-
Confidence 46999999999999999999999999997 7899999865422 0 00112599999997642211
Q ss_pred CCCCHHHHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhc
Q 016062 72 ASDDFIDFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQ 151 (396)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 151 (396)
..+...++..+.+.+...++++++++. . +++|||+|.++.|+..+|+++|||.+.|+++++..++.+.+.+.....
T Consensus 82 -~e~~~~~~~~~~~~~~~~l~~~L~~l~--~-pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 157 (480)
T PLN00164 82 -AAGVEEFISRYIQLHAPHVRAAIAGLS--C-PVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEE 157 (480)
T ss_pred -cccHHHHHHHHHHhhhHHHHHHHHhcC--C-CceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhccc
Confidence 113334455455566667777666651 1 469999999999999999999999999999999877776664432111
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCCCCCcCCCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhhC------C
Q 016062 152 GHIPFPDSKLLELVPGLDPLRFKDLPASSFGNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQY------P 224 (396)
Q Consensus 152 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~------~ 224 (396)
...+.........+++++.++..+++.......+...+.+.. .+...+++.+++||++++|+..+++++... .
T Consensus 158 ~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~ 237 (480)
T PLN00164 158 VAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPA 237 (480)
T ss_pred ccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCCC
Confidence 000111100111366666677777775432222222333333 555678999999999999999999987642 1
Q ss_pred CCeEEecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCC
Q 016062 225 VPIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADG 304 (396)
Q Consensus 225 ~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 304 (396)
++++.|||+...... ....+.++++.+||+++++++||||||||....+.+++++++.+|++.+++|||++......+
T Consensus 238 ~~v~~vGPl~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~ 315 (480)
T PLN00164 238 PTVYPIGPVISLAFT--PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAG 315 (480)
T ss_pred CceEEeCCCcccccc--CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccc
Confidence 469999999843211 011234566999999988889999999999889999999999999999999999998542111
Q ss_pred ------CCCCCCCchhHHHHhcCCcEEE-eecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc-
Q 016062 305 ------LDPTDLLPDSFKETVEKRGCIV-NWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS- 376 (396)
Q Consensus 305 ------~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~- 376 (396)
.+..+.+|+++.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 316 ~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 395 (480)
T PLN00164 316 SRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFE 395 (480)
T ss_pred cccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHH
Confidence 0111238899998888777776 99999999999999999999999999999999999999999999999997
Q ss_pred -----------c-C----CCCcHHHHHHHHHHHhc
Q 016062 377 -----------R-K----GGSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 -----------~-~----~~~~~~~l~~~~~~il~ 395 (396)
. . +-.+.+++.++|++++.
T Consensus 396 ~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~ 430 (480)
T PLN00164 396 LVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMG 430 (480)
T ss_pred HHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhc
Confidence 1 1 12588999999999873
No 19
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.4e-54 Score=396.82 Aligned_cols=378 Identities=26% Similarity=0.424 Sum_probs=278.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCCCCCCC------CC---CCCceEEeCCCCCCCCC-CCCCCHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSR-GFSITVAHAQFNSPHA------SN---HPDFTFLPLSDGSSSTP-KASDDFI 77 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~r-GH~Vt~~~~~~~~~~~------~~---~~gi~~~~~~~~~~~~~-~~~~~~~ 77 (396)
.||+++|+|++||++|++.||+.|+.+ |..||++++..+.... .. ..+++++.+|....++. ....+..
T Consensus 4 pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~~ 83 (470)
T PLN03015 4 PHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATIF 83 (470)
T ss_pred cEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccHH
Confidence 589999999999999999999999987 9999999876544211 11 12589999985432221 1011333
Q ss_pred HHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCC-eEEEeCchHHHHHHHhhhhhhhhcCCCCC
Q 016062 78 DFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLP-SIILYTLNPTNLLTYYAYPRLLEQGHIPF 156 (396)
Q Consensus 78 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 156 (396)
..+......+...++++++++. . +++|||+|.++.|+..+|+++||| .+.++++.++....+.+++..........
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~l~--~-~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~ 160 (470)
T PLN03015 84 TKMVVKMRAMKPAVRDAVKSMK--R-KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEY 160 (470)
T ss_pred HHHHHHHHhchHHHHHHHHhcC--C-CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccccc
Confidence 3333344566677777777653 1 589999999999999999999999 57788888776655555443211100000
Q ss_pred CCCcccccCCCCCCCCCCCCCCCcCCCCCc-hHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhC------CCCeEE
Q 016062 157 PDSKLLELVPGLDPLRFKDLPASSFGNLST-LLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQY------PVPIFS 229 (396)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~------~~pv~~ 229 (396)
....-...+++++.++..+++......... +..+....+...+++++++||+++||+..++.+++.+ .+|++.
T Consensus 161 ~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~ 240 (470)
T PLN03015 161 VDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYP 240 (470)
T ss_pred CCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEE
Confidence 010111236777777777777543222222 2223222555788999999999999999999887642 256999
Q ss_pred ecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCC-------
Q 016062 230 IGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSA------- 302 (396)
Q Consensus 230 vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~------- 302 (396)
|||+...... ...++++.+||+++++++||||||||...++.+++++++.+|+..+++|||++.....
T Consensus 241 VGPl~~~~~~-----~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~ 315 (470)
T PLN03015 241 IGPIVRTNVH-----VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSS 315 (470)
T ss_pred ecCCCCCccc-----ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccc
Confidence 9999843211 1123469999999888999999999999999999999999999999999999974211
Q ss_pred CCCCCCCCCchhHHHHhcCCcEEE-eecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc-----
Q 016062 303 DGLDPTDLLPDSFKETVEKRGCIV-NWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS----- 376 (396)
Q Consensus 303 ~~~~~~~~lp~~~~~~~~~~~~~~-~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~----- 376 (396)
+..+..+.+|+++.+|..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 316 ~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~ 395 (470)
T PLN03015 316 DDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEE 395 (470)
T ss_pred cccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHH
Confidence 000111358999999998888665 99999999999999999999999999999999999999999999999999
Q ss_pred -------c----CCCCcHHHHHHHHHHHh
Q 016062 377 -------R----KGGSSYNLLNELVDHIM 394 (396)
Q Consensus 377 -------~----~~~~~~~~l~~~~~~il 394 (396)
. .+..+.+.+.++|++|+
T Consensus 396 ~gvg~~~~~~~~~~~v~~e~i~~~v~~lm 424 (470)
T PLN03015 396 IGVAVRTSELPSEKVIGREEVASLVRKIV 424 (470)
T ss_pred hCeeEEecccccCCccCHHHHHHHHHHHH
Confidence 2 12468899999999987
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.7e-53 Score=401.31 Aligned_cols=385 Identities=24% Similarity=0.399 Sum_probs=273.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCC---CeEEEEeCCCCCC---------CCCCCCCceEEeCCCCCCC-CCCC-C
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRG---FSITVAHAQFNSP---------HASNHPDFTFLPLSDGSSS-TPKA-S 73 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rG---H~Vt~~~~~~~~~---------~~~~~~gi~~~~~~~~~~~-~~~~-~ 73 (396)
+.||+++|+|++||++||+.||+.|+.+| +.||++.+..+.. .....++++|+.+|+...+ ..+. .
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~~ 82 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELFV 82 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccccc
Confidence 36999999999999999999999999998 3567777543221 0111246999999965421 1110 1
Q ss_pred CCHHHHHHHHHHHchHHHHHHHHHHHhc----CC-CcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhh
Q 016062 74 DDFIDFMSNINLNCRAPLQEALTRMIAK----QE-DLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRL 148 (396)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~-~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 148 (396)
......+..+...+...+++.++++... +. +++|||+|.++.|+..+|+++|||.+.|+++++..++.+.+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~ 162 (475)
T PLN02167 83 KASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPER 162 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHh
Confidence 1121223334445555666666665421 11 349999999999999999999999999999998877766654421
Q ss_pred hhcCC--CCCCCCcccccCCCC-CCCCCCCCCCCcCCCCCchHHHHHH-hhhcCCccEEEEccccccchhHHHHHHhhCC
Q 016062 149 LEQGH--IPFPDSKLLELVPGL-DPLRFKDLPASSFGNLSTLLPFTAI-LRDIGSSSAIILNTNECLEQSSIVQFQEQYP 224 (396)
Q Consensus 149 ~~~~~--~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 224 (396)
..... .+.........++++ ..++..+++...... .....+.. .+...+++.+++||++++|+..++++++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~ 240 (475)
T PLN02167 163 HRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLPE 240 (475)
T ss_pred ccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhcc
Confidence 11100 000000111235555 245555555322111 11233333 5567789999999999999999998865311
Q ss_pred --CCeEEecccccCCCCCCCCccc--cCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCC
Q 016062 225 --VPIFSIGPMHLAAPASSCSLLK--EDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPG 300 (396)
Q Consensus 225 --~pv~~vGp~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 300 (396)
++++.|||+........ ..++ .+.++.+||+.+++++||||||||+..++.+++++++.+|+..+++|||+++..
T Consensus 241 ~~p~v~~vGpl~~~~~~~~-~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~ 319 (475)
T PLN02167 241 NYPPVYPVGPILSLKDRTS-PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTN 319 (475)
T ss_pred cCCeeEEeccccccccccC-CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 46999999986432100 1111 224599999998888999999999988899999999999999999999999754
Q ss_pred CCCCCCCCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc----
Q 016062 301 SADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS---- 376 (396)
Q Consensus 301 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~---- 376 (396)
.....+....+|+++.++..+++++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 320 ~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~ 399 (475)
T PLN02167 320 PAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVK 399 (475)
T ss_pred cccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHH
Confidence 2111111234899999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --------cC-------CCCcHHHHHHHHHHHhc
Q 016062 377 --------RK-------GGSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 --------~~-------~~~~~~~l~~~~~~il~ 395 (396)
.. +..+.+++.++|+++++
T Consensus 400 ~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~ 433 (475)
T PLN02167 400 ELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMD 433 (475)
T ss_pred HhCeeEEeecccccccCCcccHHHHHHHHHHHhc
Confidence 11 23588999999999874
No 21
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-53 Score=398.55 Aligned_cols=381 Identities=26% Similarity=0.479 Sum_probs=268.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC------C--CCceEEeCC-----CCCCCCCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN------H--PDFTFLPLS-----DGSSSTPKASD 74 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~------~--~gi~~~~~~-----~~~~~~~~~~~ 74 (396)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...... . ..++|+.+| ++++++.+...
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 5799999999999999999999999999999999999876532211 1 138999998 56665543322
Q ss_pred CHH--HHHHH---HHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhh
Q 016062 75 DFI--DFMSN---INLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLL 149 (396)
Q Consensus 75 ~~~--~~~~~---~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 149 (396)
++. .++.. ....+...++++++.. ..+++|||+|.++.|+..+|+++|||.+.|++++++....+..+....
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 164 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHN 164 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhc
Confidence 211 22222 2223444444444432 126899999999999999999999999999999887665543221100
Q ss_pred hcCCCCCCCCcccccCCCCC---CCCCCCCCCCcCCCCCchHHHHHHhhh-cCCccEEEEccccccchhHHHHHHhhCCC
Q 016062 150 EQGHIPFPDSKLLELVPGLD---PLRFKDLPASSFGNLSTLLPFTAILRD-IGSSSAIILNTNECLEQSSIVQFQEQYPV 225 (396)
Q Consensus 150 ~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 225 (396)
...+.........+++++ .++..+++..... ......+...+.. ..+++.+++||+.+||+..+++++..+++
T Consensus 165 --~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~-~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~ 241 (491)
T PLN02534 165 --AHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVS-LPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKK 241 (491)
T ss_pred --ccccCCCCCceeecCCCCccccccHHHCChhhcC-cccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCC
Confidence 111111111112244443 2445555432111 1112222222322 34577999999999999999999877667
Q ss_pred CeEEecccccCCCCCC-----CCc-cccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECC
Q 016062 226 PIFSIGPMHLAAPASS-----CSL-LKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRP 299 (396)
Q Consensus 226 pv~~vGp~~~~~~~~~-----~~~-~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 299 (396)
+++.|||+........ ... ...++++.+||+++++++||||||||......+++.+++.+|+..+++|||++..
T Consensus 242 ~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~ 321 (491)
T PLN02534 242 KVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKT 321 (491)
T ss_pred cEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEec
Confidence 8999999975321100 000 0123459999999888999999999999999999999999999999999999984
Q ss_pred CCCCCCCCCCCCchhHHHHh-cCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc--
Q 016062 300 GSADGLDPTDLLPDSFKETV-EKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS-- 376 (396)
Q Consensus 300 ~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~-- 376 (396)
........-..+|+++.++. +.++.+.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+
T Consensus 322 ~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~ 401 (491)
T PLN02534 322 GEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLI 401 (491)
T ss_pred CccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHH
Confidence 31111000013688998775 456666799999999999999999999999999999999999999999999999988
Q ss_pred ----------c---------C---C-CCcHHHHHHHHHHHh
Q 016062 377 ----------R---------K---G-GSSYNLLNELVDHIM 394 (396)
Q Consensus 377 ----------~---------~---~-~~~~~~l~~~~~~il 394 (396)
. + + -.+.+.+.++|++++
T Consensus 402 ~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m 442 (491)
T PLN02534 402 VEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLM 442 (491)
T ss_pred HHhhcceEEecccccccccccccccCccCHHHHHHHHHHHh
Confidence 1 0 1 158889999999987
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=9.6e-50 Score=377.35 Aligned_cols=363 Identities=18% Similarity=0.145 Sum_probs=255.1
Q ss_pred CcEEEEE-cCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCC---CCC------C--
Q 016062 8 CRQVVLV-PIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS-PHASNHPDFTFLPLSDGSSSTP---KAS------D-- 74 (396)
Q Consensus 8 ~~~il~~-~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~---~~~------~-- 74 (396)
+.||+.+ |.++.||+.-+..|+++|++|||+||++++.... ....+..+++.+.++...+... ... .
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVV 99 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhh
Confidence 5568755 8899999999999999999999999999885321 1111235676666642111100 000 0
Q ss_pred -CH----HHHHHHHHHHchHHHHH-HHHHHHh-cCCCcCEEEeCCchhHHHHHHHHh-CCCeEEEeCchHHHHHHHhhhh
Q 016062 75 -DF----IDFMSNINLNCRAPLQE-ALTRMIA-KQEDLPCVIHDGIMHCAEAVARHL-KLPSIILYTLNPTNLLTYYAYP 146 (396)
Q Consensus 75 -~~----~~~~~~~~~~~~~~l~~-~~~~l~~-~~~~~D~vI~D~~~~~~~~~A~~l-giP~v~~~~~~~~~~~~~~~~~ 146 (396)
+. ......+...|+..+.+ .+.++.. ...++|+||+|.+..|+..+|+.+ ++|.|.+++........ ...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~-~~~g 178 (507)
T PHA03392 100 ADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF-ETMG 178 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH-Hhhc
Confidence 00 11122334566666653 3334433 122799999999889999999999 99998887765543222 2334
Q ss_pred -hhhhcCCCCCCC------CcccccCCCCCCCCCCC-CCCC-cCCCCCchHHHHHH-----hhhcCCccEEEEccccccc
Q 016062 147 -RLLEQGHIPFPD------SKLLELVPGLDPLRFKD-LPAS-SFGNLSTLLPFTAI-----LRDIGSSSAIILNTNECLE 212 (396)
Q Consensus 147 -~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~l~~s~~~le 212 (396)
.|.+++|+|... |++.+|+.|+....... .... .....+...+.++. .+...+.+.+++|+.+.+|
T Consensus 179 g~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~d 258 (507)
T PHA03392 179 AVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFD 258 (507)
T ss_pred cCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCcccc
Confidence 678888888632 67788888753210000 0000 00011111222221 2334667899999999998
Q ss_pred hhHHHHHHhhCCCCeEEecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCcccc---CCHHHHHHHHHHHHhC
Q 016062 213 QSSIVQFQEQYPVPIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIAL---TGEKELAEMAWGLANS 289 (396)
Q Consensus 213 ~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~---~~~~~~~~~~~al~~~ 289 (396)
++ +.+++++++|||++.+... .++++++ +.+|+++. ++++|||||||+.. ++.+.++.+++|+++.
T Consensus 259 ~~------rp~~p~v~~vGgi~~~~~~--~~~l~~~--l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l 327 (507)
T PHA03392 259 NN------RPVPPSVQYLGGLHLHKKP--PQPLDDY--LEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL 327 (507)
T ss_pred CC------CCCCCCeeeecccccCCCC--CCCCCHH--HHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC
Confidence 76 3466779999999885321 1334444 99999974 56899999999864 5789999999999999
Q ss_pred CCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccC
Q 016062 290 KQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFG 369 (396)
Q Consensus 290 ~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~ 369 (396)
++++||+.+... .+ ..+|+|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++
T Consensus 328 ~~~viw~~~~~~---------~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~ 394 (507)
T PHA03392 328 PYNVLWKYDGEV---------EA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMG 394 (507)
T ss_pred CCeEEEEECCCc---------Cc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCc
Confidence 999999987532 11 12467889999999999999999999999999999999999999999999999
Q ss_pred ccccccc-----------cCCCCcHHHHHHHHHHHhc
Q 016062 370 DQKVNAS-----------RKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 370 DQ~~na~-----------~~~~~~~~~l~~~~~~il~ 395 (396)
||+.||+ +....+.++|.++|+++++
T Consensus 395 DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~ 431 (507)
T PHA03392 395 DQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIE 431 (507)
T ss_pred cHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhC
Confidence 9999999 5567899999999999874
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.3e-51 Score=397.27 Aligned_cols=357 Identities=24% Similarity=0.369 Sum_probs=213.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCCC--CCCCC-----------
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHA-SNHPDFTFLPLSDGSSSTP--KASDD----------- 75 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~-~~~~gi~~~~~~~~~~~~~--~~~~~----------- 75 (396)
||+++|. +.||+.++..|+++|++|||+||++++....... .....++++.++....... .....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 6888885 7799999999999999999999999985422111 1225677777775544322 11111
Q ss_pred ---HHHHH-------HHHHHHchHHHHH--HHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHh
Q 016062 76 ---FIDFM-------SNINLNCRAPLQE--ALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYY 143 (396)
Q Consensus 76 ---~~~~~-------~~~~~~~~~~l~~--~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 143 (396)
....+ ......|+..+.+ +++.+... ++|++|+|.+..|+..+|+.+++|.+.+.++.........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~ 158 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSF 158 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhh
Confidence 11111 1112334333322 33344433 7999999999999999999999999887554322111111
Q ss_pred hhhhhhhcCCCCCCC------CcccccCCCCCCCCC-CCCCCCcC----CCCCchHHHHHH-hhhcCCccEEEEcccccc
Q 016062 144 AYPRLLEQGHIPFPD------SKLLELVPGLDPLRF-KDLPASSF----GNLSTLLPFTAI-LRDIGSSSAIILNTNECL 211 (396)
Q Consensus 144 ~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~l 211 (396)
..+.+.+++|+|... +++.+|+.|+..... ..+..... ............ .+.+.+.+.+++|+++.+
T Consensus 159 ~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~~~l 238 (500)
T PF00201_consen 159 SGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLINSHPSL 238 (500)
T ss_dssp TSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSSTEEE-
T ss_pred ccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhhhccccC
Confidence 124567788888743 556666666531000 00000000 000000000001 233445677888999888
Q ss_pred chhHHHHHHhhCCCCeEEecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCcccc-CCHHHHHHHHHHHHhCC
Q 016062 212 EQSSIVQFQEQYPVPIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIAL-TGEKELAEMAWGLANSK 290 (396)
Q Consensus 212 e~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~al~~~~ 290 (396)
+++ ++. .+++++||+++.+.+ ++++.+ +.+|++..+++++|||||||+.. ++.+..+.+++|+++++
T Consensus 239 d~p-----rp~-~p~v~~vGgl~~~~~----~~l~~~--~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~ 306 (500)
T PF00201_consen 239 DFP-----RPL-LPNVVEVGGLHIKPA----KPLPEE--LWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLP 306 (500)
T ss_dssp --------HHH-HCTSTTGCGC-S--------TCHHH--HHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCST
T ss_pred cCC-----cch-hhcccccCccccccc----cccccc--cchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCC
Confidence 765 443 356999999988755 345554 89999975678999999999976 55566889999999999
Q ss_pred CCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCc
Q 016062 291 QPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGD 370 (396)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~D 370 (396)
++|||++.+. .++ .+++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++|
T Consensus 307 ~~~iW~~~~~----------~~~----~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~D 372 (500)
T PF00201_consen 307 QRFIWKYEGE----------PPE----NLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGD 372 (500)
T ss_dssp TEEEEEETCS----------HGC----HHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTT
T ss_pred Cccccccccc----------ccc----cccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCccc
Confidence 9999998652 222 24688899999999999999999999999999999999999999999999999
Q ss_pred cccccc-----------cCCCCcHHHHHHHHHHHhc
Q 016062 371 QKVNAS-----------RKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 371 Q~~na~-----------~~~~~~~~~l~~~~~~il~ 395 (396)
|+.||+ +.+..+.++|.++|++||.
T Consensus 373 Q~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~ 408 (500)
T PF00201_consen 373 QPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLE 408 (500)
T ss_dssp HHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHH
T ss_pred CCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHh
Confidence 999999 6677899999999999984
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.9e-40 Score=311.37 Aligned_cols=338 Identities=17% Similarity=0.183 Sum_probs=217.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCC-----------CCCHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKA-----------SDDFI 77 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~-----------~~~~~ 77 (396)
+||+|++.|+.||++|+++||++|++|||+|++++++.....+.. .|++|++++......... .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-AGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-cCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 589999999999999999999999999999999999655444433 789999998653321100 01122
Q ss_pred HHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCC
Q 016062 78 DFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFP 157 (396)
Q Consensus 78 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 157 (396)
.....+...+...++++++.+... +||+||+|.+++++..+|+++|||++.+++++...... ..|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~--~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-----------~~~~~ 146 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARDW--GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA-----------FPPPL 146 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc-----------CCCcc
Confidence 333444455555665555554323 89999999988889999999999999998875321100 00000
Q ss_pred CCcccccCCCCCCCCCCCCCCCcCCCCCchHHHHHH-hhhcC---------CccEEEEccccccchhHHHHHHhhCCCCe
Q 016062 158 DSKLLELVPGLDPLRFKDLPASSFGNLSTLLPFTAI-LRDIG---------SSSAIILNTNECLEQSSIVQFQEQYPVPI 227 (396)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~l~~s~~~le~~~~~~~~~~~~~pv 227 (396)
. +. +...+..... . ............ ...+. ..+..+....+.+.+ ..++.+.+.
T Consensus 147 ~-----~~-~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 211 (401)
T cd03784 147 G-----RA-NLRLYALLEA---E-LWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLP-----PPPDWPRFD 211 (401)
T ss_pred c-----hH-HHHHHHHHHH---H-HHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCC-----CCCCccccC
Confidence 0 00 0000000000 0 000000000000 00000 011111212222211 123334446
Q ss_pred EEecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCcccc-CCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCC
Q 016062 228 FSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIAL-TGEKELAEMAWGLANSKQPFLWVLRPGSADGLD 306 (396)
Q Consensus 228 ~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 306 (396)
.++|......+. ....+.++..|++. ++++||||+||+.. .....++.++++++..+.++||.++.....
T Consensus 212 ~~~g~~~~~~~~----~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~--- 282 (401)
T cd03784 212 LVTGYGFRDVPY----NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG--- 282 (401)
T ss_pred cEeCCCCCCCCC----CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc---
Confidence 677533332221 11233447788874 57899999999976 456788889999999999999998764311
Q ss_pred CCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc----------
Q 016062 307 PTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS---------- 376 (396)
Q Consensus 307 ~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~---------- 376 (396)
. ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||+
T Consensus 283 ------~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~ 351 (401)
T cd03784 283 ------A---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPA 351 (401)
T ss_pred ------c---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCC
Confidence 1 134578899999999999999888 9999999999999999999999999999999998
Q ss_pred -cCCCCcHHHHHHHHHHHhc
Q 016062 377 -RKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 -~~~~~~~~~l~~~~~~il~ 395 (396)
..+..+...|.++++++++
T Consensus 352 l~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 352 LDPRELTAERLAAALRRLLD 371 (401)
T ss_pred CCcccCCHHHHHHHHHHHhC
Confidence 3444688999999988874
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=9.3e-40 Score=305.24 Aligned_cols=334 Identities=17% Similarity=0.229 Sum_probs=218.4
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCC--C--CCCHHHHHHHHHHHchH
Q 016062 14 VPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPK--A--SDDFIDFMSNINLNCRA 89 (396)
Q Consensus 14 ~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~ 89 (396)
+.+|++||++|++.||++|++|||+|++++++.+.+.+.. .|+.+..++........ . ..+....+..+...+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAED 79 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-cCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999766655544 79999999865443110 0 02333444444444444
Q ss_pred HHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccccCCCCC
Q 016062 90 PLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLELVPGLD 169 (396)
Q Consensus 90 ~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 169 (396)
.+..+.+.+.+. +||+||+|.+++++..+|+++|||+|.+.+..... ..++... .|... .... ..
T Consensus 80 ~~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~----~~~~~-~~~~----~~ 144 (392)
T TIGR01426 80 VLPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV----SPAGE-GSAE----EG 144 (392)
T ss_pred HHHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc----cccch-hhhh----hh
Confidence 544444433322 79999999988899999999999999986543210 0001000 01100 0000 00
Q ss_pred CCCCCCCCCCcCCCCCchHHHHHH--hh-----h--cCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCC
Q 016062 170 PLRFKDLPASSFGNLSTLLPFTAI--LR-----D--IGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPAS 240 (396)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~--~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~ 240 (396)
....+.+. .....+.++... .. . ....+..+..+.+.+++ .++.++.+++++||+......
T Consensus 145 ~~~~~~~~----~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~-----~~~~~~~~~~~~Gp~~~~~~~- 214 (392)
T TIGR01426 145 AIAERGLA----EYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQP-----AGETFDDSFTFVGPCIGDRKE- 214 (392)
T ss_pred ccccchhH----HHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCC-----CccccCCCeEEECCCCCCccc-
Confidence 00000000 000001111111 00 0 01122233444444443 245567779999998764321
Q ss_pred CCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhc
Q 016062 241 SCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVE 320 (396)
Q Consensus 241 ~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~ 320 (396)
..+|.....++++||||+||+.......++.+++++.+.+.+++|..+.+.. .+.+ ...+
T Consensus 215 ----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~---------~~~~-~~~~ 274 (392)
T TIGR01426 215 ----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD---------PADL-GELP 274 (392)
T ss_pred ----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC---------hhHh-ccCC
Confidence 1236555567899999999987766678889999999999999988765420 1111 1246
Q ss_pred CCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc-----------cCCCCcHHHHHHH
Q 016062 321 KRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS-----------RKGGSSYNLLNEL 389 (396)
Q Consensus 321 ~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~-----------~~~~~~~~~l~~~ 389 (396)
+|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+ .....+.+++.++
T Consensus 275 ~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~a 352 (392)
T TIGR01426 275 PNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREA 352 (392)
T ss_pred CCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHH
Confidence 78899999999999999888 9999999999999999999999999999999999 3445678889999
Q ss_pred HHHHhc
Q 016062 390 VDHIMS 395 (396)
Q Consensus 390 ~~~il~ 395 (396)
|.++++
T Consensus 353 i~~~l~ 358 (392)
T TIGR01426 353 VLAVLS 358 (392)
T ss_pred HHHHhc
Confidence 888874
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=6e-40 Score=316.33 Aligned_cols=348 Identities=30% Similarity=0.452 Sum_probs=217.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC-CCC--ce--------EEeCCCCCCCCCCCC-CC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN-HPD--FT--------FLPLSDGSSSTPKAS-DD 75 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~-~~g--i~--------~~~~~~~~~~~~~~~-~~ 75 (396)
..+++++++|++||++|+..+|++|+++||+||++.+......... ... +. +...++.++...+.. ..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 3578889999999999999999999999999999999655433221 111 11 111111111111100 01
Q ss_pred HHHHHHHHHHHchHHHHHHHHHHHhcCC-CcCEEEeCCchhHHHHHHHHhC-CCeEEEeCchHHHHHHHhhhhhhhhcCC
Q 016062 76 FIDFMSNINLNCRAPLQEALTRMIAKQE-DLPCVIHDGIMHCAEAVARHLK-LPSIILYTLNPTNLLTYYAYPRLLEQGH 153 (396)
Q Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~D~vI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (396)
.......+...|...+++....+..... ++|++|+|.+..+...++.... ++...+.+........ +.+.+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----g~~~~~~~ 160 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLAL----GLPSPLSY 160 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhc----CCcCcccc
Confidence 1122455666777777765444443332 4999999998766777776664 8888887776543332 22333334
Q ss_pred CCCCC-------CcccccCCCCCCCCCCCCCCCcCC--CCCch-HHHH-------HH-hhhcCCccEEEEccccccchhH
Q 016062 154 IPFPD-------SKLLELVPGLDPLRFKDLPASSFG--NLSTL-LPFT-------AI-LRDIGSSSAIILNTNECLEQSS 215 (396)
Q Consensus 154 ~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~-------~~-~~~~~~~~~~l~~s~~~le~~~ 215 (396)
.|... +.+..+..++.............. ..... .... .. .+...+.+..++|+.+.++.+
T Consensus 161 ~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~- 239 (496)
T KOG1192|consen 161 VPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDFE- 239 (496)
T ss_pred cCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCCC-
Confidence 44432 223333332210000000000000 00000 0000 00 122344557777776665542
Q ss_pred HHHHHhhCCCCeEEecccccCCCCCCCCccccCchhhhhhccCCCC--eEEEEEcCccc---cCCHHHHHHHHHHHHhC-
Q 016062 216 IVQFQEQYPVPIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQH--SVIYVSFGSIA---LTGEKELAEMAWGLANS- 289 (396)
Q Consensus 216 ~~~~~~~~~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vv~vs~Gs~~---~~~~~~~~~~~~al~~~- 289 (396)
.....+++++|||+...... .... ...+|++..+.. ++|||||||+. .++.++.+.++.|+++.
T Consensus 240 ----~~~~~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~ 309 (496)
T KOG1192|consen 240 ----PRPLLPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQ 309 (496)
T ss_pred ----CCCCCCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCC
Confidence 12124669999999997432 1111 245676655444 89999999998 69999999999999999
Q ss_pred CCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCcccc-ccCccccceeeccchhhHHHHHHcCCceeeeccc
Q 016062 290 KQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQV-LAHSAVGGFWTHCGWNSILESISEGVPMICRSAF 368 (396)
Q Consensus 290 ~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~l-L~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~ 368 (396)
++.|+|++....... +++++.++-++||...+|+||.++ |.|+++++||||||+||++||+++|||||++|++
T Consensus 310 ~~~FiW~~~~~~~~~------~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf 383 (496)
T KOG1192|consen 310 GVTFLWKYRPDDSIY------FPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLF 383 (496)
T ss_pred CceEEEEecCCcchh------hhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCcc
Confidence 888999998652110 233332222467888899999998 6999999999999999999999999999999999
Q ss_pred Cccccccc
Q 016062 369 GDQKVNAS 376 (396)
Q Consensus 369 ~DQ~~na~ 376 (396)
+||+.||+
T Consensus 384 ~DQ~~Na~ 391 (496)
T KOG1192|consen 384 GDQPLNAR 391 (496)
T ss_pred ccchhHHH
Confidence 99999999
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1e-36 Score=281.17 Aligned_cols=344 Identities=19% Similarity=0.207 Sum_probs=206.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCC---CCCCCHHHHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTP---KASDDFIDFMSNIN 84 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 84 (396)
.|||+++..|+.||++|+++||++|.++||+|++++++.+.+.+.+ .|+.|..++....+.. ........+.. ..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 78 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-AGLAFVAYPIRDSELATEDGKFAGVKSFRR-LL 78 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-hCcceeeccccCChhhhhhhhhhccchhHH-Hh
Confidence 3689999999999999999999999999999999999777766655 6788888875411111 11111111111 22
Q ss_pred HHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCC-Ccccc
Q 016062 85 LNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPD-SKLLE 163 (396)
Q Consensus 85 ~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~ 163 (396)
........+.++-+.+. .+|+++.|.....+ .+++..++|++.............. .+. ++... .....
T Consensus 79 ~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~ 148 (406)
T COG1819 79 QQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG------LPL-PPVGIAGKLPI 148 (406)
T ss_pred hhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc------cCc-ccccccccccc
Confidence 22223333444444443 69999999654434 8999999999886544221111100 000 00000 00000
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCchHHHHHH-----hhhcCCccEEEEccccccchhHHHHH--H-hhCCCCeEEeccccc
Q 016062 164 LVPGLDPLRFKDLPASSFGNLSTLLPFTAI-----LRDIGSSSAIILNTNECLEQSSIVQF--Q-EQYPVPIFSIGPMHL 235 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~s~~~le~~~~~~~--~-~~~~~pv~~vGp~~~ 235 (396)
+............ ............ .+...+.-.-+..+-+.++..+.+.. + ..+|....++||+..
T Consensus 149 ~~~~~~~~~~~~~-----~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 223 (406)
T COG1819 149 PLYPLPPRLVRPL-----IFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLG 223 (406)
T ss_pred cccccChhhcccc-----ccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCccccccc
Confidence 0000000000000 000000000000 00000000000011111111110000 0 112223666777776
Q ss_pred CCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhH
Q 016062 236 AAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSF 315 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~ 315 (396)
.... +...| ...++++||+|+||.... .++++.+++++..++.++|+..+. ... ...
T Consensus 224 ~~~~----------~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~~---~~~------ 280 (406)
T COG1819 224 EAAN----------ELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-ARD---TLV------ 280 (406)
T ss_pred cccc----------cCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-ccc---ccc------
Confidence 5432 12233 235789999999999876 899999999999999999998865 211 012
Q ss_pred HHHhcCCcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc-----------cCCCCcHH
Q 016062 316 KETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS-----------RKGGSSYN 384 (396)
Q Consensus 316 ~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~-----------~~~~~~~~ 384 (396)
..|.|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||++||. .....+..
T Consensus 281 --~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~ 356 (406)
T COG1819 281 --NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEE 356 (406)
T ss_pred --cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHH
Confidence 23566799999999999999999 9999999999999999999999999999999999 55578999
Q ss_pred HHHHHHHHHhc
Q 016062 385 LLNELVDHIMS 395 (396)
Q Consensus 385 ~l~~~~~~il~ 395 (396)
.|+++|+++|+
T Consensus 357 ~l~~av~~vL~ 367 (406)
T COG1819 357 RLRAAVNEVLA 367 (406)
T ss_pred HHHHHHHHHhc
Confidence 99999999986
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=6.6e-23 Score=186.51 Aligned_cols=294 Identities=14% Similarity=0.102 Sum_probs=180.3
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHH---
Q 016062 9 RQVVLVPIP-LQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNIN--- 84 (396)
Q Consensus 9 ~~il~~~~~-~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 84 (396)
|||++...+ |.||+..++.||++| |||+|++++.......... . +....++.-.........+.........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-R-FPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-c-cCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 578888877 779999999999999 6999999999644433322 2 4555554322222222223222222221
Q ss_pred HHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCccccc
Q 016062 85 LNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLEL 164 (396)
Q Consensus 85 ~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 164 (396)
......++++.+.+... +||+||+|. .+.+..+|+..|+|++.+....... . .....
T Consensus 77 ~~~~~~~~~~~~~l~~~--~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~----~------~~~~~---------- 133 (318)
T PF13528_consen 77 ARLARRIRREIRWLREF--RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFL----H------PNFWL---------- 133 (318)
T ss_pred HHHHHHHHHHHHHHHhc--CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcc----c------ccCCc----------
Confidence 22234444444444433 799999994 5557789999999999987763211 0 00000
Q ss_pred CCCCCCCCCCCCCCCcCCCCCchHHHHHH--hhh-cCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCC
Q 016062 165 VPGLDPLRFKDLPASSFGNLSTLLPFTAI--LRD-IGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASS 241 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~ 241 (396)
.....+..+... .+. ...++..+.-+++ .. ......+.++||+..+...
T Consensus 134 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~~~~~~~p~~~~~~~-- 185 (318)
T PF13528_consen 134 -----------------PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFFRVPFVGPIIRPEIR-- 185 (318)
T ss_pred -----------------chhhhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccccccccCchhccccc--
Confidence 000111122222 111 2333333333332 10 0001236677877765332
Q ss_pred CCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCC-CCeEEEECCCCCCCCCCCCCCchhHHHHhc
Q 016062 242 CSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSK-QPFLWVLRPGSADGLDPTDLLPDSFKETVE 320 (396)
Q Consensus 242 ~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~ 320 (396)
+ .. ..+++.|+|++|..... .++++++..+ .++++. +... .+...
T Consensus 186 -~---~~---------~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~--------------~~~~~ 231 (318)
T PF13528_consen 186 -E---LP---------PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA--------------ADPRP 231 (318)
T ss_pred -c---cC---------CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc--------------ccccC
Confidence 1 00 12456799999987542 6678888876 555544 4331 00114
Q ss_pred CCcEEEeec-C-ccccccCccccceeeccchhhHHHHHHcCCceeeecc--cCccccccc-----------cCCCCcHHH
Q 016062 321 KRGCIVNWA-P-QRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSA--FGDQKVNAS-----------RKGGSSYNL 385 (396)
Q Consensus 321 ~~~~~~~~v-p-~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~--~~DQ~~na~-----------~~~~~~~~~ 385 (396)
+|+.+..|. + ..++|..+++ +|||||+||++|++++|+|++++|. ..||..||+ +...++...
T Consensus 232 ~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~ 309 (318)
T PF13528_consen 232 GNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPER 309 (318)
T ss_pred CCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHH
Confidence 777888876 3 4669988888 9999999999999999999999999 789999999 556778889
Q ss_pred HHHHHHHH
Q 016062 386 LNELVDHI 393 (396)
Q Consensus 386 l~~~~~~i 393 (396)
|.++|++|
T Consensus 310 l~~~l~~~ 317 (318)
T PF13528_consen 310 LAEFLERL 317 (318)
T ss_pred HHHHHhcC
Confidence 99988764
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.91 E-value=3.3e-22 Score=182.58 Aligned_cols=297 Identities=16% Similarity=0.191 Sum_probs=180.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHch
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPH-ASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCR 88 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~-~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (396)
||++...++-||++|.+++|++|.++||+|.|++.....+. .....|+.+..++.. ....... .+.+........
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~---~l~~~~~-~~~~~~~~~~~~ 78 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSG---KLRRYFD-LKNIKDPFLVMK 78 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEecc---CcCCCch-HHHHHHHHHHHH
Confidence 58888888889999999999999999999999997544322 222257888877632 1111112 222222222222
Q ss_pred HHHH--HHHHHHHhcCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCccccc
Q 016062 89 APLQ--EALTRMIAKQEDLPCVIHDGIM--HCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLEL 164 (396)
Q Consensus 89 ~~l~--~~~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 164 (396)
..++ .++++. +||+||....+ ..+..+|..+++|++..........+..
T Consensus 79 ~~~~~~~i~~~~-----kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~nr---------------------- 131 (352)
T PRK12446 79 GVMDAYVRIRKL-----KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLANK---------------------- 131 (352)
T ss_pred HHHHHHHHHHhc-----CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHHHH----------------------
Confidence 2222 234444 89999998644 3367899999999988655421110000
Q ss_pred CCCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCC-CCeEEecccccCCCCCCCC
Q 016062 165 VPGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYP-VPIFSIGPMHLAAPASSCS 243 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~pv~~vGp~~~~~~~~~~~ 243 (396)
++ .+.++.++. ++++. ...++ .+++++|+...+.-. +
T Consensus 132 -------------------------~~-----~~~a~~v~~-~f~~~--------~~~~~~~k~~~tG~Pvr~~~~---~ 169 (352)
T PRK12446 132 -------------------------IA-----LRFASKIFV-TFEEA--------AKHLPKEKVIYTGSPVREEVL---K 169 (352)
T ss_pred -------------------------HH-----HHhhCEEEE-Eccch--------hhhCCCCCeEEECCcCCcccc---c
Confidence 00 011222222 33221 12233 357888977765321 0
Q ss_pred ccccCchhhhhhccCCCCeEEEEEcCccccCCH-HHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCC
Q 016062 244 LLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGE-KELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKR 322 (396)
Q Consensus 244 ~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 322 (396)
...+...+.+.-.+++++|+|..||...... +.+..++..+.. +.+++|.++.+. +.+... .. .+
T Consensus 170 --~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---------~~~~~~-~~-~~ 235 (352)
T PRK12446 170 --GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---------LDDSLQ-NK-EG 235 (352)
T ss_pred --ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch---------HHHHHh-hc-CC
Confidence 0011112223323467899999999875222 223333333322 477788776542 111111 11 34
Q ss_pred cEEEeec-Cc-cccccCccccceeeccchhhHHHHHHcCCceeeeccc-----Cccccccc-----------cCCCCcHH
Q 016062 323 GCIVNWA-PQ-RQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAF-----GDQKVNAS-----------RKGGSSYN 384 (396)
Q Consensus 323 ~~~~~~v-p~-~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~-----~DQ~~na~-----------~~~~~~~~ 384 (396)
..+..|+ ++ .+++.++++ +|||||.+|+.|++++|+|+|++|+. .||..||+ .....+.+
T Consensus 236 ~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~ 313 (352)
T PRK12446 236 YRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVN 313 (352)
T ss_pred cEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHH
Confidence 4666787 54 469999998 99999999999999999999999984 48999999 45666788
Q ss_pred HHHHHHHHHhc
Q 016062 385 LLNELVDHIMS 395 (396)
Q Consensus 385 ~l~~~~~~il~ 395 (396)
.|.+.+.++++
T Consensus 314 ~l~~~l~~ll~ 324 (352)
T PRK12446 314 SLIKHVEELSH 324 (352)
T ss_pred HHHHHHHHHHc
Confidence 88888888763
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.86 E-value=3.8e-20 Score=167.92 Aligned_cols=278 Identities=17% Similarity=0.173 Sum_probs=145.5
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCce-EEeCCCCCCCCCCCCCCHHHHHHHHHHHc
Q 016062 10 QVVLVPIP-LQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFT-FLPLSDGSSSTPKASDDFIDFMSNINLNC 87 (396)
Q Consensus 10 ~il~~~~~-~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
||++...+ +.||+.|.++|+++|.+ ||+|++++... ........++. +...|...........+....+.......
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~ 78 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR-SKNYISKYGFKVFETFPGIKLKGEDGKVNIVKTLRNKEYSP 78 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC-HHHhhhhhcCcceeccCCceEeecCCcCcHHHHHHhhcccc
Confidence 46665544 66999999999999999 99999998755 32222223443 33322110000011112222221110111
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccccCCC
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLELVPG 167 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 167 (396)
...+....+.+.+. +||+||+| ..+.+..+|+.+|||++.+...... .++ ..
T Consensus 79 ~~~~~~~~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~------~~~-----~~-------------- 130 (321)
T TIGR00661 79 KKAIRREINIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT------RYP-----LK-------------- 130 (321)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh------cCC-----cc--------------
Confidence 12333333333323 79999999 5666788999999999988653110 000 00
Q ss_pred CCCCCCCCCCCCcCCCCCchHHHHHH-hhhc-CCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCCCCcc
Q 016062 168 LDPLRFKDLPASSFGNLSTLLPFTAI-LRDI-GSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASSCSLL 245 (396)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~~~ 245 (396)
. +........ .... ..++.+....++.... ..| ++. +.. +. +.
T Consensus 131 -----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p-~~~--~~~----~~---~~- 175 (321)
T TIGR00661 131 -----T-----------DLIVYPTMAALRIFNERCERFIVPDYPFPYT--------ICP-KII--KNM----EG---PL- 175 (321)
T ss_pred -----c-----------chhHHHHHHHHHHhccccceEeeecCCCCCC--------CCc-ccc--ccC----CC---cc-
Confidence 0 000000000 1111 1122222222111100 000 110 000 00 00
Q ss_pred ccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEE
Q 016062 246 KEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCI 325 (396)
Q Consensus 246 ~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 325 (396)
. ..+..+|.. .+++.|+|.+|+... +.+++++++.+. +.+.+.... . ..+ ..++|+.+
T Consensus 176 ~-~~~~~~~~~--~~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~--~------~~~----~~~~~v~~ 233 (321)
T TIGR00661 176 I-RYDVDDVDN--YGEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYE--V------AKN----SYNENVEI 233 (321)
T ss_pred c-chhhhcccc--CCCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCC--C------Ccc----ccCCCEEE
Confidence 0 001222222 235668888887532 456778877653 222222211 0 111 23577889
Q ss_pred EeecC--ccccccCccccceeeccchhhHHHHHHcCCceeeecccC--ccccccc
Q 016062 326 VNWAP--QRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFG--DQKVNAS 376 (396)
Q Consensus 326 ~~~vp--~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~--DQ~~na~ 376 (396)
..|.| ..+.|+.+++ +|||||++|++||+++|+|++++|... ||..||+
T Consensus 234 ~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~ 286 (321)
T TIGR00661 234 RRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAV 286 (321)
T ss_pred EECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHH
Confidence 99997 3567878777 999999999999999999999999954 8999999
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=1.5e-18 Score=156.51 Aligned_cols=295 Identities=19% Similarity=0.175 Sum_probs=179.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGF-SITVAHAQFNSPHA-SNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLN 86 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH-~Vt~~~~~~~~~~~-~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
++|++...++-||+.|.++|+++|.++|+ +|.++.+....+.. ....++.+..++..-........ .+......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~----~~~~~~~~ 76 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLK----LLKAPFKL 76 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHH----HHHHHHHH
Confidence 36788888888999999999999999999 58887665444332 23358888888754332221111 11111112
Q ss_pred chH--HHHHHHHHHHhcCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCccc
Q 016062 87 CRA--PLQEALTRMIAKQEDLPCVIHDGIM--HCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLL 162 (396)
Q Consensus 87 ~~~--~l~~~~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 162 (396)
+.. ..+..+++. +||+||.-..+ ..+..+|..+|||.+..-.......+...
T Consensus 77 ~~~~~~a~~il~~~-----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~------------------- 132 (357)
T COG0707 77 LKGVLQARKILKKL-----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKI------------------- 132 (357)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHH-------------------
Confidence 222 222355555 89999996544 55678999999999997544221100000
Q ss_pred ccCCCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhC-CCCeEEecccccCCCCCC
Q 016062 163 ELVPGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQY-PVPIFSIGPMHLAAPASS 241 (396)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~-~~pv~~vGp~~~~~~~~~ 241 (396)
. ...++.+ ..+++..+ ... +..++.+|-...+.-.
T Consensus 133 ---~------------------------------~~~a~~V-~~~f~~~~--------~~~~~~~~~~tG~Pvr~~~~-- 168 (357)
T COG0707 133 ---L------------------------------SKFAKKV-ASAFPKLE--------AGVKPENVVVTGIPVRPEFE-- 168 (357)
T ss_pred ---h------------------------------HHhhcee-eecccccc--------ccCCCCceEEecCcccHHhh--
Confidence 0 0011111 22332211 001 1236777744433211
Q ss_pred CCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHH-HHHHHHhCC--CCeEEEECCCCCCCCCCCCCCchhHHHH
Q 016062 242 CSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAE-MAWGLANSK--QPFLWVLRPGSADGLDPTDLLPDSFKET 318 (396)
Q Consensus 242 ~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~-~~~al~~~~--~~~i~~~~~~~~~~~~~~~~lp~~~~~~ 318 (396)
+ .+.. -.+.... .++++|+|.-||... ..++. +.+++..+. ..+++..+.+. .+.....
T Consensus 169 -~-~~~~--~~~~~~~-~~~~~ilV~GGS~Ga---~~ln~~v~~~~~~l~~~~~v~~~~G~~~----------~~~~~~~ 230 (357)
T COG0707 169 -E-LPAA--EVRKDGR-LDKKTILVTGGSQGA---KALNDLVPEALAKLANRIQVIHQTGKND----------LEELKSA 230 (357)
T ss_pred -c-cchh--hhhhhcc-CCCcEEEEECCcchh---HHHHHHHHHHHHHhhhCeEEEEEcCcch----------HHHHHHH
Confidence 1 1111 1122221 268899999999865 22333 334443433 56666655431 1222222
Q ss_pred hc-CC-cEEEeecCccc-cccCccccceeeccchhhHHHHHHcCCceeeecc-cC---ccccccc-----------cCCC
Q 016062 319 VE-KR-GCIVNWAPQRQ-VLAHSAVGGFWTHCGWNSILESISEGVPMICRSA-FG---DQKVNAS-----------RKGG 380 (396)
Q Consensus 319 ~~-~~-~~~~~~vp~~~-lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~-~~---DQ~~na~-----------~~~~ 380 (396)
.. .+ +.+..|++++. +++-+++ +||++|.+|+.|.++.|+|+|.+|. .+ +|..||+ +...
T Consensus 231 ~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~ 308 (357)
T COG0707 231 YNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSE 308 (357)
T ss_pred HhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEecccc
Confidence 22 23 67779998855 9999999 9999999999999999999999999 34 8999999 6677
Q ss_pred CcHHHHHHHHHHHhc
Q 016062 381 SSYNLLNELVDHIMS 395 (396)
Q Consensus 381 ~~~~~l~~~~~~il~ 395 (396)
++.+.+.+.|.++++
T Consensus 309 lt~~~l~~~i~~l~~ 323 (357)
T COG0707 309 LTPEKLAELILRLLS 323 (357)
T ss_pred CCHHHHHHHHHHHhc
Confidence 899999999998875
No 32
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.71 E-value=3.3e-15 Score=128.68 Aligned_cols=323 Identities=15% Similarity=0.137 Sum_probs=189.2
Q ss_pred CcEEEEEcCCC--CCCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCC--CCCCCHHHHHH
Q 016062 8 CRQVVLVPIPL--QGHITPMLQLGTILHSR--GFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTP--KASDDFIDFMS 81 (396)
Q Consensus 8 ~~~il~~~~~~--~GH~~p~l~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~--~~~~~~~~~~~ 81 (396)
.+||+|++.-. -||+..++.||++|++. |.+|++++.......+...+|++++.+|.-...+. ....+...-..
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~ 88 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLE 88 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCHH
Confidence 56999999764 48999999999999998 99999999987777776558999999995433222 11111111133
Q ss_pred HHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcc
Q 016062 82 NINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKL 161 (396)
Q Consensus 82 ~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 161 (396)
.+...-.+.+....+.. +||++|+|.+-++. -.++ .|+.. +.. ..+.-+...
T Consensus 89 e~~~~Rs~lil~t~~~f-----kPDi~IVd~~P~Gl---r~EL-~ptL~-----------yl~-----~~~t~~vL~--- 140 (400)
T COG4671 89 ETKKLRSQLILSTAETF-----KPDIFIVDKFPFGL---RFEL-LPTLE-----------YLK-----TTGTRLVLG--- 140 (400)
T ss_pred HHHHHHHHHHHHHHHhc-----CCCEEEEeccccch---hhhh-hHHHH-----------HHh-----hcCCcceee---
Confidence 33333334444444554 89999999764431 1111 01000 000 000000000
Q ss_pred cccCCCCCCCCCCCCCCCcCCCCCchHHHHHHhhhc-CCccEEEEccccccchhHHHH-HHhhCCCCeEEecccccCCCC
Q 016062 162 LELVPGLDPLRFKDLPASSFGNLSTLLPFTAILRDI-GSSSAIILNTNECLEQSSIVQ-FQEQYPVPIFSIGPMHLAAPA 239 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~-~~~~~~~pv~~vGp~~~~~~~ 239 (396)
...+...+....+++ ..+.. ++.+ +-.|.+++...+.+-.+.-.+ ..+.....+.|+|.+..+.+.
T Consensus 141 lr~i~D~p~~~~~~w------~~~~~------~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~ 208 (400)
T COG4671 141 LRSIRDIPQELEADW------RRAET------VRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPH 208 (400)
T ss_pred hHhhhhchhhhccch------hhhHH------HHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcC
Confidence 000000000001100 00000 1222 235666776666653221110 011111239999999332211
Q ss_pred CCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC-CCC--eEEEECCCCCCCCCCCCCCchhHH
Q 016062 240 SSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS-KQP--FLWVLRPGSADGLDPTDLLPDSFK 316 (396)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-~~~--~i~~~~~~~~~~~~~~~~lp~~~~ 316 (396)
..+|.. .. +.+.-|+||-|.-.. ..+.+...++|.... +.. .++..++. .|+...
T Consensus 209 ---~~~p~~-------~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP~----------MP~~~r 266 (400)
T COG4671 209 ---LPLPPH-------EA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGPF----------MPEAQR 266 (400)
T ss_pred ---CCCCCc-------CC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCCC----------CCHHHH
Confidence 111222 11 334569999888654 778888888887663 443 44455544 666555
Q ss_pred HHh----c--CCcEEEeecCc-cccccCccccceeeccchhhHHHHHHcCCceeeecccC---ccccccc----------
Q 016062 317 ETV----E--KRGCIVNWAPQ-RQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFG---DQKVNAS---------- 376 (396)
Q Consensus 317 ~~~----~--~~~~~~~~vp~-~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~---DQ~~na~---------- 376 (396)
+++ + +++.+..|-.+ .+++..++. +|+-||+||++|-|++|+|.+++|... ||---|.
T Consensus 267 ~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dv 344 (400)
T COG4671 267 QKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDV 344 (400)
T ss_pred HHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCccee
Confidence 443 4 68889999887 559988888 999999999999999999999999953 7777776
Q ss_pred -cCCCCcHHHHHHHHHHHh
Q 016062 377 -RKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 377 -~~~~~~~~~l~~~~~~il 394 (396)
...+.+..+|.++++..+
T Consensus 345 L~pe~lt~~~La~al~~~l 363 (400)
T COG4671 345 LLPENLTPQNLADALKAAL 363 (400)
T ss_pred eCcccCChHHHHHHHHhcc
Confidence 566677888888876554
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.68 E-value=9.3e-15 Score=134.89 Aligned_cols=301 Identities=14% Similarity=0.077 Sum_probs=164.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHch
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPH-ASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCR 88 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~-~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (396)
+|++...+..||......+++.|.++||+|++++....... .....|+++..++..-... ......+...... .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~ 75 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRR----KGSLKKLKAPFKL-L 75 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCC----CChHHHHHHHHHH-H
Confidence 58888888889999999999999999999999987433211 1122356666665321111 1111212111111 1
Q ss_pred HHHHHHHHHHHhcCCCcCEEEeCCc--hhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccccCC
Q 016062 89 APLQEALTRMIAKQEDLPCVIHDGI--MHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLELVP 166 (396)
Q Consensus 89 ~~l~~~~~~l~~~~~~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 166 (396)
..+..+.+.+. .. +||+|+++.. ...+..+|...++|++....... + ..
T Consensus 76 ~~~~~~~~~i~-~~-~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~------------------~----~~----- 126 (350)
T cd03785 76 KGVLQARKILK-KF-KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV------------------P----GL----- 126 (350)
T ss_pred HHHHHHHHHHH-hc-CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC------------------c----cH-----
Confidence 11112222222 22 7999998753 34566788999999986422100 0 00
Q ss_pred CCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCCCCccc
Q 016062 167 GLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASSCSLLK 246 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~~~~ 246 (396)
...+. ...++.++..+....+. .-+.++.++|.-...... . +
T Consensus 127 --------------------~~~~~-----~~~~~~vi~~s~~~~~~--------~~~~~~~~i~n~v~~~~~---~--~ 168 (350)
T cd03785 127 --------------------ANRLL-----ARFADRVALSFPETAKY--------FPKDKAVVTGNPVREEIL---A--L 168 (350)
T ss_pred --------------------HHHHH-----HHhhCEEEEcchhhhhc--------CCCCcEEEECCCCchHHh---h--h
Confidence 00000 01244444443322211 012346777754332110 0 0
Q ss_pred cCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC---CCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCc
Q 016062 247 EDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS---KQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRG 323 (396)
Q Consensus 247 ~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 323 (396)
.+ . .+.+....++++|++..|+... ....+.++++++.+ +..+++.++.+. . +.+.+.+++ ..+|+
T Consensus 169 ~~-~-~~~~~~~~~~~~i~~~~g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g~--~----~~l~~~~~~-~~~~v 237 (350)
T cd03785 169 DR-E-RARLGLRPGKPTLLVFGGSQGA--RAINEAVPEALAELLRKRLQVIHQTGKGD--L----EEVKKAYEE-LGVNY 237 (350)
T ss_pred hh-h-HHhcCCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhccCeEEEEEcCCcc--H----HHHHHHHhc-cCCCe
Confidence 01 0 1222222445667766666543 12222333444443 344455554431 1 112222211 13688
Q ss_pred EEEeecC-ccccccCccccceeeccchhhHHHHHHcCCceeeeccc----Cccccccc-----------cCCCCcHHHHH
Q 016062 324 CIVNWAP-QRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAF----GDQKVNAS-----------RKGGSSYNLLN 387 (396)
Q Consensus 324 ~~~~~vp-~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~----~DQ~~na~-----------~~~~~~~~~l~ 387 (396)
.+.+|+. ..++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+. ..+..+..+|.
T Consensus 238 ~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~ 315 (350)
T cd03785 238 EVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLA 315 (350)
T ss_pred EEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHH
Confidence 9999984 4669999888 99999999999999999999999863 46766666 22224678888
Q ss_pred HHHHHHhc
Q 016062 388 ELVDHIMS 395 (396)
Q Consensus 388 ~~~~~il~ 395 (396)
+++.++++
T Consensus 316 ~~i~~ll~ 323 (350)
T cd03785 316 AALLELLS 323 (350)
T ss_pred HHHHHHhc
Confidence 88887764
No 34
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.66 E-value=5.7e-15 Score=130.69 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=77.4
Q ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHhC--CCCeEEEECCCCCCCCCCCCCCchhHHHH--hcCCcEEEeecCcc-ccc
Q 016062 261 HSVIYVSFGSIALTGEKELAEMAWGLANS--KQPFLWVLRPGSADGLDPTDLLPDSFKET--VEKRGCIVNWAPQR-QVL 335 (396)
Q Consensus 261 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~~~~vp~~-~lL 335 (396)
.+.|++++|.... ......+++++++. +.++.++++... ...+.+++. ...|+.+..++++. +++
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~--------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN--------PNLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC--------cCHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 3568999996644 23555677777764 456677766542 122333332 23588999999986 699
Q ss_pred cCccccceeeccchhhHHHHHHcCCceeeecccCccccccc
Q 016062 336 AHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS 376 (396)
Q Consensus 336 ~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 376 (396)
..+++ +||+|| +|++|+++.|+|+|++|...+|..||+
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~ 277 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQ 277 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhh
Confidence 99999 999999 999999999999999999999999985
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.66 E-value=1.7e-14 Score=133.38 Aligned_cols=299 Identities=14% Similarity=0.097 Sum_probs=165.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHc
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS-PHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNC 87 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
+||++...+..||...+..|+++|.++||+|++++.+... .......|++++.++..-.. .......+......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~l~~~~~~- 76 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLR----RKGSLANLKAPFKL- 76 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcC----CCChHHHHHHHHHH-
Confidence 4699999888899999999999999999999999885422 11112147777776532110 11111122211111
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCc--hhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccccC
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGI--MHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLELV 165 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 165 (396)
...+..+.+.+.+. +||+|++... ...+..+++..++|+|.........
T Consensus 77 ~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~--------------------------- 127 (357)
T PRK00726 77 LKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVPG--------------------------- 127 (357)
T ss_pred HHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCcc---------------------------
Confidence 11112222222222 7999999963 3445667888999998642210000
Q ss_pred CCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCCCCcc
Q 016062 166 PGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASSCSLL 245 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~~~ 245 (396)
...++. ...++.++..+...+ .. .-+.+++++|........ ..
T Consensus 128 --------------------~~~r~~-----~~~~d~ii~~~~~~~-----~~---~~~~~i~vi~n~v~~~~~---~~- 170 (357)
T PRK00726 128 --------------------LANKLL-----ARFAKKVATAFPGAF-----PE---FFKPKAVVTGNPVREEIL---AL- 170 (357)
T ss_pred --------------------HHHHHH-----HHHhchheECchhhh-----hc---cCCCCEEEECCCCChHhh---cc-
Confidence 000000 011222222221111 00 112447777755432211 00
Q ss_pred ccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCC--CeEEEECCCCCCCCCCCCCCchhHHHH--hcC
Q 016062 246 KEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQ--PFLWVLRPGSADGLDPTDLLPDSFKET--VEK 321 (396)
Q Consensus 246 ~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~ 321 (396)
+.. -.+ +....++++|++..|+... ......+.+|+++... .+++.++.+. . +...+. ..-
T Consensus 171 ~~~--~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~---------~-~~~~~~~~~~~ 235 (357)
T PRK00726 171 AAP--PAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGD---------L-EEVRAAYAAGI 235 (357)
T ss_pred cch--hhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCc---------H-HHHHHHhhcCC
Confidence 000 011 1212345667766565422 2223334477766543 3444555432 1 222211 222
Q ss_pred CcEEEeecCc-cccccCccccceeeccchhhHHHHHHcCCceeeecc----cCccccccc-----------cCCCCcHHH
Q 016062 322 RGCIVNWAPQ-RQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSA----FGDQKVNAS-----------RKGGSSYNL 385 (396)
Q Consensus 322 ~~~~~~~vp~-~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~----~~DQ~~na~-----------~~~~~~~~~ 385 (396)
++.+.+|+.+ .++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..||. ..+..+.++
T Consensus 236 ~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~ 313 (357)
T PRK00726 236 NAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEK 313 (357)
T ss_pred cEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHH
Confidence 4677899854 679999998 9999999999999999999999997 357877776 333346889
Q ss_pred HHHHHHHHhc
Q 016062 386 LNELVDHIMS 395 (396)
Q Consensus 386 l~~~~~~il~ 395 (396)
|.+++.++++
T Consensus 314 l~~~i~~ll~ 323 (357)
T PRK00726 314 LAEKLLELLS 323 (357)
T ss_pred HHHHHHHHHc
Confidence 9999988764
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.55 E-value=2.4e-12 Score=118.67 Aligned_cols=296 Identities=17% Similarity=0.100 Sum_probs=151.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHc
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSP-HASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNC 87 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
|||+|++.+..||+.....||++|.++||+|++++.+.... ......|++++.++..-. ........+......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~----~~~~~~~~l~~~~~~- 75 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGL----RRKGSFRLIKTPLKL- 75 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCc----CCCChHHHHHHHHHH-
Confidence 47999999999999988899999999999999998743211 111224677766652211 111222222221111
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccccC
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGIM--HCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLELV 165 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 165 (396)
...+..+.+.+... +||+|++.... ..+..+++.+++|.+.........
T Consensus 76 ~~~~~~l~~~i~~~--~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~--------------------------- 126 (348)
T TIGR01133 76 LKAVFQARRILKKF--KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAVPG--------------------------- 126 (348)
T ss_pred HHHHHHHHHHHHhc--CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCCcc---------------------------
Confidence 11112222222222 79999998543 334557888999997532110000
Q ss_pred CCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCCCCcc
Q 016062 166 PGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASSCSLL 245 (396)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~~~ 245 (396)
...++. .+.++.++..+...-+ .+ ...++|.-...... ..
T Consensus 127 --------------------~~~~~~-----~~~~d~ii~~~~~~~~---------~~--~~~~i~n~v~~~~~---~~- 166 (348)
T TIGR01133 127 --------------------LTNKLL-----SRFAKKVLISFPGAKD---------HF--EAVLVGNPVRQEIR---SL- 166 (348)
T ss_pred --------------------HHHHHH-----HHHhCeeEECchhHhh---------cC--CceEEcCCcCHHHh---cc-
Confidence 000000 0223444443321111 11 12344432211100 00
Q ss_pred ccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC---CCCeEEEECCCCCCCCCCCCCCchhHHHHhcCC
Q 016062 246 KEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS---KQPFLWVLRPGSADGLDPTDLLPDSFKETVEKR 322 (396)
Q Consensus 246 ~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 322 (396)
+.. .+.+....++++|.+..|+... ......+.++++++ +.++++..+.+. . +.+++...+.
T Consensus 167 ~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~---------~-~~l~~~~~~~ 231 (348)
T TIGR01133 167 PVP---RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND---------L-EKVKNVYQEL 231 (348)
T ss_pred cch---hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch---------H-HHHHHHHhhC
Confidence 000 1122222334555544455432 22223344555443 345544333321 1 2232222221
Q ss_pred --cEEEeec--CccccccCccccceeeccchhhHHHHHHcCCceeeeccc---Cccccccc-----------cCCCCcHH
Q 016062 323 --GCIVNWA--PQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAF---GDQKVNAS-----------RKGGSSYN 384 (396)
Q Consensus 323 --~~~~~~v--p~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~---~DQ~~na~-----------~~~~~~~~ 384 (396)
..++.|. +..++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+. ..+..+..
T Consensus 232 ~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~ 309 (348)
T TIGR01133 232 GIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPE 309 (348)
T ss_pred CceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHH
Confidence 1233344 44668999998 99999988999999999999999873 35666655 23333578
Q ss_pred HHHHHHHHHhc
Q 016062 385 LLNELVDHIMS 395 (396)
Q Consensus 385 ~l~~~~~~il~ 395 (396)
+|.+++.++++
T Consensus 310 ~l~~~i~~ll~ 320 (348)
T TIGR01133 310 KLLEALLKLLL 320 (348)
T ss_pred HHHHHHHHHHc
Confidence 88888887764
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.48 E-value=3.1e-12 Score=118.76 Aligned_cols=304 Identities=12% Similarity=0.002 Sum_probs=159.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCC----ceEEeCCCCCCCCCCCCCCHHHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPD----FTFLPLSDGSSSTPKASDDFIDFMSNIN 84 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
.||++...++.||+.|. +|+++|.++|+++.|+...... ... .| +++..++ ...+.+.+..+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~--m~~-~g~~~~~~~~~l~---------v~G~~~~l~~~~ 72 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPR--MAA-EGCEVLYSMEELS---------VMGLREVLGRLG 72 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHH--HHh-CcCccccChHHhh---------hccHHHHHHHHH
Confidence 47999999999999999 9999999999999999874321 111 22 2222222 112222222211
Q ss_pred HHchHHHHHHHHHHHhcCCCcCEEEe-CCchhHH--HHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcc
Q 016062 85 LNCRAPLQEALTRMIAKQEDLPCVIH-DGIMHCA--EAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKL 161 (396)
Q Consensus 85 ~~~~~~l~~~~~~l~~~~~~~D~vI~-D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 161 (396)
. ....+.+..+.+.+. +||+||. |.-++.. ...|+.+|||++.+.+- -. +.+..
T Consensus 73 ~-~~~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P-~~-----waw~~-------------- 129 (385)
T TIGR00215 73 R-LLKIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP-QV-----WAWRK-------------- 129 (385)
T ss_pred H-HHHHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC-cH-----hhcCc--------------
Confidence 1 122222333333333 8999996 4322232 33889999999986421 10 00000
Q ss_pred cccCCCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCC
Q 016062 162 LELVPGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASS 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~ 241 (396)
.+ .+.+. ..++.++..+ + .+.. ...+ ...+..+||....+...
T Consensus 130 --------------------~~----~r~l~-----~~~d~v~~~~-~-~e~~---~~~~-~g~~~~~vGnPv~~~~~-- 172 (385)
T TIGR00215 130 --------------------WR----AKKIE-----KATDFLLAIL-P-FEKA---FYQK-KNVPCRFVGHPLLDAIP-- 172 (385)
T ss_pred --------------------ch----HHHHH-----HHHhHhhccC-C-CcHH---HHHh-cCCCEEEECCchhhhcc--
Confidence 00 11111 1122222211 1 1211 1111 22457778855533211
Q ss_pred CCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchhHH
Q 016062 242 CSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDSFK 316 (396)
Q Consensus 242 ~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~ 316 (396)
...+...+..+-+.-..++++|.+--||....-......++++++.+ +.++++....+.... .-+.+.
T Consensus 173 -~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~------~~~~~~ 245 (385)
T TIGR00215 173 -LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRL------QFEQIK 245 (385)
T ss_pred -ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHH------HHHHHH
Confidence 00011111222222224567888877886542234455566665543 334555443321000 001111
Q ss_pred HHhcCCcEEEeec-CccccccCccccceeeccchhhHHHHHHcCCceeee----cccC---------ccccccc------
Q 016062 317 ETVEKRGCIVNWA-PQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICR----SAFG---------DQKVNAS------ 376 (396)
Q Consensus 317 ~~~~~~~~~~~~v-p~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~----P~~~---------DQ~~na~------ 376 (396)
+....+..+.-+. +..+++..+|+ +|+-.|..|+ |+.++|+|+|++ |+.. .|..|+.
T Consensus 246 ~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~ 322 (385)
T TIGR00215 246 AEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRL 322 (385)
T ss_pred HHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCc
Confidence 1221222332222 33558989888 9999999988 999999999999 8742 2777777
Q ss_pred -----cCCCCcHHHHHHHHHHHhc
Q 016062 377 -----RKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 -----~~~~~~~~~l~~~~~~il~ 395 (396)
..++.+.++|.+.+.++|+
T Consensus 323 ~~pel~q~~~~~~~l~~~~~~ll~ 346 (385)
T TIGR00215 323 LVPELLQEECTPHPLAIALLLLLE 346 (385)
T ss_pred cchhhcCCCCCHHHHHHHHHHHhc
Confidence 4566788888888888774
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.41 E-value=2.5e-12 Score=119.96 Aligned_cols=124 Identities=17% Similarity=0.235 Sum_probs=81.4
Q ss_pred CCCeEEEEEcCccccCCHHHHHHHHHHHHhC-CCCeEEEECCCCCCCCCCCCCCchhHHH---HhcCCcEEEeecCcc-c
Q 016062 259 TQHSVIYVSFGSIALTGEKELAEMAWGLANS-KQPFLWVLRPGSADGLDPTDLLPDSFKE---TVEKRGCIVNWAPQR-Q 333 (396)
Q Consensus 259 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~~~~~vp~~-~ 333 (396)
+++++|++..|+.... +.+..+++++.+. +.++++..+.+. .+-+.+++ ..++|+.+.+|+++. +
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~--------~~~~~l~~~~~~~~~~v~~~g~~~~~~~ 269 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE--------ALKQSLEDLQETNPDALKVFGYVENIDE 269 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH--------HHHHHHHHHHhcCCCcEEEEechhhHHH
Confidence 3456777777776432 2345677777654 456665554321 01122222 233588999999874 6
Q ss_pred cccCccccceeeccchhhHHHHHHcCCceeee-cccCccccccc---cCCC----CcHHHHHHHHHHHh
Q 016062 334 VLAHSAVGGFWTHCGWNSILESISEGVPMICR-SAFGDQKVNAS---RKGG----SSYNLLNELVDHIM 394 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~-P~~~DQ~~na~---~~~~----~~~~~l~~~~~~il 394 (396)
++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+. +.+. .+..++.+.+.+++
T Consensus 270 l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll 336 (380)
T PRK13609 270 LFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEALL 336 (380)
T ss_pred HHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHHHH
Confidence 9999998 99999988999999999999985 56666666765 1111 35567777777665
No 39
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.41 E-value=1e-14 Score=115.69 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=78.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHH------H
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNI------N 84 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 84 (396)
|+|.+.|+.||++|+++||++|++|||+|++.+++...+... ..|++|++++.+ . ...........+... .
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~-~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 77 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVE-AAGLEFVPIPGD-S-RLPRSLEPLANLRRLARLIRGL 77 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHH-HTT-EEEESSSC-G-GGGHHHHHHHHHHCHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccc-ccCceEEEecCC-c-CcCcccchhhhhhhHHHHhhhh
Confidence 789999999999999999999999999999999966655553 379999999865 0 000000011111111 1
Q ss_pred HHchHHHHHHHHHH-HhcCC--CcCEEEeCCchhHHHHHHHHhCCCeEEEeCchH
Q 016062 85 LNCRAPLQEALTRM-IAKQE--DLPCVIHDGIMHCAEAVARHLKLPSIILYTLNP 136 (396)
Q Consensus 85 ~~~~~~l~~~~~~l-~~~~~--~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 136 (396)
......+.+...+. ....+ ..|+++.+.....+..+|+++|||++.....+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 78 EEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 11122222211111 11111 578888898788899999999999999877654
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.33 E-value=7.4e-11 Score=110.15 Aligned_cols=298 Identities=13% Similarity=0.089 Sum_probs=146.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC--CCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS--PHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLN 86 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~--~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
+||++...+..||+.|.. ++++|.++++++.++...... ..... .++.+..++ ...+.+.+......
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~---------~~g~~~~~~~~~~~ 70 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCE-SLFDMEELA---------VMGLVEVLPRLPRL 70 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCc-cccCHHHhh---------hccHHHHHHHHHHH
Confidence 579999999999999999 999999998888887753211 11111 122222211 11222222221111
Q ss_pred c--hHHHHHHHHHHHhcCCCcCEEEeCCc-hhHH--HHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcc
Q 016062 87 C--RAPLQEALTRMIAKQEDLPCVIHDGI-MHCA--EAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKL 161 (396)
Q Consensus 87 ~--~~~l~~~~~~l~~~~~~~D~vI~D~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 161 (396)
. ...++.++++. +||+|+.-.. ..+. ...|.++|||++.+.+..... .
T Consensus 71 ~~~~~~~~~~l~~~-----kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~----~------------------ 123 (380)
T PRK00025 71 LKIRRRLKRRLLAE-----PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWA----W------------------ 123 (380)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhh----c------------------
Confidence 1 11222333333 7999886332 1222 345778899988753321000 0
Q ss_pred cccCCCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCC
Q 016062 162 LELVPGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASS 241 (396)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~ 241 (396)
. . . ..... ...++.++..+.... +.... .+.++.++|....+...
T Consensus 124 ------------~--~----~---~~~~~------~~~~d~i~~~~~~~~-----~~~~~-~g~~~~~~G~p~~~~~~-- 168 (380)
T PRK00025 124 ------------R--Q----G---RAFKI------AKATDHVLALFPFEA-----AFYDK-LGVPVTFVGHPLADAIP-- 168 (380)
T ss_pred ------------C--c----h---HHHHH------HHHHhhheeCCccCH-----HHHHh-cCCCeEEECcCHHHhcc--
Confidence 0 0 0 00000 112333344332111 11122 22347777744332110
Q ss_pred CCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchhHH
Q 016062 242 CSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDSFK 316 (396)
Q Consensus 242 ~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~ 316 (396)
. .+....+.+.+.-..++++|++..||...........++++++.+ +.+++++.+.+. .-+.++
T Consensus 169 -~-~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~---------~~~~~~ 237 (380)
T PRK00025 169 -L-LPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK---------RREQIE 237 (380)
T ss_pred -c-ccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh---------hHHHHH
Confidence 0 011111222232223456677766765432223345566665442 335555543221 112233
Q ss_pred HHhc----CCcEEEeecCc-cccccCccccceeeccchhhHHHHHHcCCceeeecccC--------ccccc-cc------
Q 016062 317 ETVE----KRGCIVNWAPQ-RQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFG--------DQKVN-AS------ 376 (396)
Q Consensus 317 ~~~~----~~~~~~~~vp~-~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~--------DQ~~n-a~------ 376 (396)
+... -++.+.+ ++ ..+++.+++ +|+-+|.+++ ||+++|+|+|++|-.. .|..| +.
T Consensus 238 ~~~~~~~~~~v~~~~--~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (380)
T PRK00025 238 EALAEYAGLEVTLLD--GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLL 312 (380)
T ss_pred HHHhhcCCCCeEEEc--ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHh
Confidence 2221 2333322 32 558889998 9999999888 9999999999984321 23233 21
Q ss_pred ---------cCCCCcHHHHHHHHHHHhc
Q 016062 377 ---------RKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 377 ---------~~~~~~~~~l~~~~~~il~ 395 (396)
.....+...|.+.+.++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 313 AGRELVPELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred cCCCcchhhcCCCCCHHHHHHHHHHHhc
Confidence 1234567788888777764
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.30 E-value=4.5e-14 Score=115.56 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=78.8
Q ss_pred EEEEEcCccccC-CHHHHHHHHHHHHhC--CCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecC-ccccccCc
Q 016062 263 VIYVSFGSIALT-GEKELAEMAWGLANS--KQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAP-QRQVLAHS 338 (396)
Q Consensus 263 vv~vs~Gs~~~~-~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp-~~~lL~~~ 338 (396)
+|+|+.||.... -...+..+.+.+... +.++++..+...... ....+. ....|+.+.+|++ ..++++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~------~~~~~~-~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE------LKIKVE-NFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH------HCCCHC-CTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH------HHHHHh-ccCCcEEEEechhhHHHHHHHc
Confidence 489999987541 011122233333332 467788877652111 111110 1126789999999 56699999
Q ss_pred cccceeeccchhhHHHHHHcCCceeeecccC----ccccccc-----------cCCCCcHHHHHHHHHHHhc
Q 016062 339 AVGGFWTHCGWNSILESISEGVPMICRSAFG----DQKVNAS-----------RKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 339 ~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~----DQ~~na~-----------~~~~~~~~~l~~~~~~il~ 395 (396)
++ +|||||.||++|++++|+|+|++|... +|..||. .....+...|.+.|.++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~ 143 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLS 143 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHc
Confidence 99 999999999999999999999999988 9999998 3334446677887777654
No 42
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.15 E-value=1.6e-09 Score=101.21 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=81.8
Q ss_pred CCCeEEEEEcCccccCCHHHHHHHHHHHHh-C-CCCeEEEECCCCCCCCCCCCCCchhHHHH--hcCCcEEEeecCcc-c
Q 016062 259 TQHSVIYVSFGSIALTGEKELAEMAWGLAN-S-KQPFLWVLRPGSADGLDPTDLLPDSFKET--VEKRGCIVNWAPQR-Q 333 (396)
Q Consensus 259 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~-~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~~~~vp~~-~ 333 (396)
+++++|+++.|+... .+.+..+++++.+ . +.++++..+.+. .+-+.+.+. ..+++.+.+|+++. +
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------ELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------HHHHHHHHHhccCCCeEEEeccchHHH
Confidence 356788888888752 2445555666433 2 345555544321 011222222 23578888999764 5
Q ss_pred cccCccccceeeccchhhHHHHHHcCCceeee-cccCccccccc--cCC-----CCcHHHHHHHHHHHhc
Q 016062 334 VLAHSAVGGFWTHCGWNSILESISEGVPMICR-SAFGDQKVNAS--RKG-----GSSYNLLNELVDHIMS 395 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~-P~~~DQ~~na~--~~~-----~~~~~~l~~~~~~il~ 395 (396)
+++.+++ +|+..|..|+.||++.|+|+|++ |.-+.|..||. .+. -.+..++.+.+.++++
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~ 337 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIADTPEEAIKIVASLTN 337 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhc
Confidence 9999999 99998888999999999999998 66666678887 211 1356677777777653
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.11 E-value=5.1e-09 Score=97.68 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=56.5
Q ss_pred CCcEEEeecCc-cccccCccccceeeccchhhHHHHHHcCCceeeecccCccc-cccc---cCC----CCcHHHHHHHHH
Q 016062 321 KRGCIVNWAPQ-RQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQK-VNAS---RKG----GSSYNLLNELVD 391 (396)
Q Consensus 321 ~~~~~~~~vp~-~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~-~na~---~~~----~~~~~~l~~~~~ 391 (396)
.++.+.+|+++ .++++.+|+ +|+.+|.+|+.||++.|+|+|+.+....|. .|+. +.+ -.+..+|.+.+.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~ 342 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVA 342 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHH
Confidence 46788899987 459999999 999999999999999999999998766665 4665 111 135677777777
Q ss_pred HHhc
Q 016062 392 HIMS 395 (396)
Q Consensus 392 ~il~ 395 (396)
++++
T Consensus 343 ~ll~ 346 (382)
T PLN02605 343 EWFG 346 (382)
T ss_pred HHHc
Confidence 7653
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.10 E-value=1.3e-07 Score=87.28 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=69.2
Q ss_pred eEEEEEcCccccCCHHHHHHHHHHHHhC----CCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCccc---c
Q 016062 262 SVIYVSFGSIALTGEKELAEMAWGLANS----KQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQ---V 334 (396)
Q Consensus 262 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~---l 334 (396)
+.+++..|+... .+-...++++++++ +.++++. +.+. ..+.+. ....|+.+.+|+++.+ +
T Consensus 197 ~~~i~~~G~~~~--~k~~~~~i~~~~~l~~~~~~~l~i~-G~~~---------~~~~~~-~~~~~v~~~g~~~~~~~~~~ 263 (364)
T cd03814 197 RPVLLYVGRLAP--EKNLEALLDADLPLRRRPPVRLVIV-GDGP---------ARARLE-ARYPNVHFLGFLDGEELAAA 263 (364)
T ss_pred CeEEEEEecccc--ccCHHHHHHHHHHhhhcCCceEEEE-eCCc---------hHHHHh-ccCCcEEEEeccCHHHHHHH
Confidence 445666777543 23334455555554 3344433 3221 111111 3457889999998755 7
Q ss_pred ccCccccceeeccc----hhhHHHHHHcCCceeeecccCc-----cccccccCCCCcHHHHHHHHHHHh
Q 016062 335 LAHSAVGGFWTHCG----WNSILESISEGVPMICRSAFGD-----QKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 335 L~~~~~~~~ItHGG----~~s~~eal~~GvP~v~~P~~~D-----Q~~na~~~~~~~~~~l~~~~~~il 394 (396)
++.+++ +|+.+. .+++.||+++|+|+|+.+..+- +..++.-....+..++.+.+.+++
T Consensus 264 ~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~ 330 (364)
T cd03814 264 YASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALL 330 (364)
T ss_pred HHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHH
Confidence 888888 886654 4789999999999999887542 112222222334455666666654
No 45
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.01 E-value=1.8e-07 Score=87.07 Aligned_cols=317 Identities=15% Similarity=0.077 Sum_probs=152.7
Q ss_pred EEEEEcCCC----CCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--------CCCCceEEeCCCCCCCCCCCCCCHH
Q 016062 10 QVVLVPIPL----QGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS--------NHPDFTFLPLSDGSSSTPKASDDFI 77 (396)
Q Consensus 10 ~il~~~~~~----~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~--------~~~gi~~~~~~~~~~~~~~~~~~~~ 77 (396)
||++++... .|+-..+..++++|+++||+|++++......... ...++++..++...... ....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 76 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK----NGLL 76 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc----cchH
Confidence 356665332 4899999999999999999999998754332221 12456665555322111 1111
Q ss_pred HHHHHHHHHchHHHHHHHHHHH-hcCCCcCEEEeCCch----hHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcC
Q 016062 78 DFMSNINLNCRAPLQEALTRMI-AKQEDLPCVIHDGIM----HCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQG 152 (396)
Q Consensus 78 ~~~~~~~~~~~~~l~~~~~~l~-~~~~~~D~vI~D~~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (396)
..+......... ....+. ... ++|+|++.... ..+..++...++|++............ ...
T Consensus 77 ~~~~~~~~~~~~----~~~~~~~~~~-~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~--------~~~ 143 (394)
T cd03794 77 KRLLNYLSFALS----ALLALLKRRR-RPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAV--------ALG 143 (394)
T ss_pred HHHHhhhHHHHH----HHHHHHhccc-CCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHH--------Hcc
Confidence 111111111111 111111 122 89999999622 223456667799999875542110000 000
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCCCcCCCCCchHHHHHH--hhhcCCccEEEEccccccchhHHHHHH-hhC-CCCeE
Q 016062 153 HIPFPDSKLLELVPGLDPLRFKDLPASSFGNLSTLLPFTAI--LRDIGSSSAIILNTNECLEQSSIVQFQ-EQY-PVPIF 228 (396)
Q Consensus 153 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~s~~~le~~~~~~~~-~~~-~~pv~ 228 (396)
.. ........+... ......++.++..+....+ ... ... ..++.
T Consensus 144 ~~---------------------------~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~-----~~~~~~~~~~~~~ 191 (394)
T cd03794 144 LL---------------------------KNGSLLYRLLRKLERLIYRRADAIVVISPGMRE-----YLVRRGVPPEKIS 191 (394)
T ss_pred Cc---------------------------cccchHHHHHHHHHHHHHhcCCEEEEECHHHHH-----HHHhcCCCcCceE
Confidence 00 000000112222 2224567777776643332 111 111 12344
Q ss_pred EecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC----CCCeEEEECCCCCCC
Q 016062 229 SIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS----KQPFLWVLRPGSADG 304 (396)
Q Consensus 229 ~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~ 304 (396)
.+......... ..........+... .+++.+++..|+... .+....+++++... +.++++ ++.+.
T Consensus 192 ~i~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~i~~~G~~~~--~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~--- 260 (394)
T cd03794 192 VIPNGVDLELF---KPPPADESLRKELG--LDDKFVVLYAGNIGR--AQGLDTLLEAAALLKDRPDIRFLI-VGDGP--- 260 (394)
T ss_pred EcCCCCCHHHc---CCccchhhhhhccC--CCCcEEEEEecCccc--ccCHHHHHHHHHHHhhcCCeEEEE-eCCcc---
Confidence 44332221110 00000000011111 234556667787654 22334444444442 344433 33321
Q ss_pred CCCCCCCchhHH----HHhcCCcEEEeecCccc---cccCccccceeeccc---------hhhHHHHHHcCCceeeeccc
Q 016062 305 LDPTDLLPDSFK----ETVEKRGCIVNWAPQRQ---VLAHSAVGGFWTHCG---------WNSILESISEGVPMICRSAF 368 (396)
Q Consensus 305 ~~~~~~lp~~~~----~~~~~~~~~~~~vp~~~---lL~~~~~~~~ItHGG---------~~s~~eal~~GvP~v~~P~~ 368 (396)
..+.+. ....+|+.+..++++.+ ++..+++ +|.... -+++.||+++|+|+|+.+..
T Consensus 261 ------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~ 332 (394)
T cd03794 261 ------EKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDG 332 (394)
T ss_pred ------cHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCC
Confidence 112222 22347888899998654 6788888 664322 33479999999999998886
Q ss_pred Cccccc-----cccCCCCcHHHHHHHHHHHh
Q 016062 369 GDQKVN-----ASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 369 ~DQ~~n-----a~~~~~~~~~~l~~~~~~il 394 (396)
+.+... +.--...+..++.+.+.+++
T Consensus 333 ~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 333 ESAELVEEAGAGLVVPPGDPEALAAAILELL 363 (394)
T ss_pred CchhhhccCCcceEeCCCCHHHHHHHHHHHH
Confidence 543322 22222235677777777765
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.99 E-value=4.5e-07 Score=86.99 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=70.0
Q ss_pred EEEEEcCccccCCHHHHHHHHHHHHhC-CCCeEEEECCCCCCCCCCCCCCchhHHHHh-cCCcEEEeecCccc---cccC
Q 016062 263 VIYVSFGSIALTGEKELAEMAWGLANS-KQPFLWVLRPGSADGLDPTDLLPDSFKETV-EKRGCIVNWAPQRQ---VLAH 337 (396)
Q Consensus 263 vv~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~vp~~~---lL~~ 337 (396)
.+++..|+.. ..+.+..+++++++. +.+++++ +.+. ..+.+++.. ..++.+.+++++.+ +++.
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~iv-G~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFV-GDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEE-eCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 3445668764 345567788888876 4554444 3321 112333222 25778889997644 7888
Q ss_pred ccccceeec----cchhhHHHHHHcCCceeeecccC--c---c---ccccccCCCCcHHHHHHHHHHHh
Q 016062 338 SAVGGFWTH----CGWNSILESISEGVPMICRSAFG--D---Q---KVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 338 ~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~~--D---Q---~~na~~~~~~~~~~l~~~~~~il 394 (396)
+++ ||.- |-..++.||+++|+|+|+....+ | . ..|+---...+..++.+++.+++
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll 398 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLL 398 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 888 7743 22457899999999999865422 2 1 22222122234567777777665
No 47
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.99 E-value=1.3e-07 Score=88.18 Aligned_cols=313 Identities=12% Similarity=0.048 Sum_probs=163.9
Q ss_pred CCCCCCHHHHHHHHHHHHh--CCCeEE---EEeCCCCCCC-CCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHH-Hch
Q 016062 16 IPLQGHITPMLQLGTILHS--RGFSIT---VAHAQFNSPH-ASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINL-NCR 88 (396)
Q Consensus 16 ~~~~GH~~p~l~la~~L~~--rGH~Vt---~~~~~~~~~~-~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 88 (396)
.-++|-=.-.++||++|.+ .|++|. ++......+. .....| .+..+|. +.-....+...+..... ...
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~s----gg~~~~~~~~~~~~~~~gl~~ 78 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELPS----GGFSYQSLRGLLRDLRAGLVG 78 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCCC----CCccCCCHHHHHHHHHhhHHH
Confidence 3455656678899999998 699999 8888533321 111123 3444432 11112333333333333 333
Q ss_pred HHHHH--HHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccccCC
Q 016062 89 APLQE--ALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLELVP 166 (396)
Q Consensus 89 ~~l~~--~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 166 (396)
..++. .++++.. +||+|+.=.-+. ...+|..+|+|++.+.+.-. .+.. . ..++ ....++..+++
T Consensus 79 ~~~~~~~~~~~~~~---~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~es----n~~~-~--~~~~---~~~~~~~~~~~ 144 (396)
T TIGR03492 79 LTLGQWRALRKWAK---KGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKS----DYYW-E--SGPR---RSPSDEYHRLE 144 (396)
T ss_pred HHHHHHHHHHHHhh---cCCEEEEECcHH-HHHHHHHcCCCceEEEeecc----ceee-c--CCCC---CccchhhhccC
Confidence 33332 4444422 699999876445 88899999999999654311 0000 0 0000 01112222222
Q ss_pred CCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCCCCccc
Q 016062 167 GLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASSCSLLK 246 (396)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~~~~ 246 (396)
+.....+ + ...+ ..+.++.++..+-. ..+++++ .+.++.++|-...+.-. .
T Consensus 145 G~~~~p~-e-----------~n~l-----~~~~a~~v~~~~~~-----t~~~l~~-~g~k~~~vGnPv~d~l~---~--- 195 (396)
T TIGR03492 145 GSLYLPW-E-----------RWLM-----RSRRCLAVFVRDRL-----TARDLRR-QGVRASYLGNPMMDGLE---P--- 195 (396)
T ss_pred CCccCHH-H-----------HHHh-----hchhhCEEeCCCHH-----HHHHHHH-CCCeEEEeCcCHHhcCc---c---
Confidence 2211111 0 0000 01234444443311 1122232 23469999976665321 0
Q ss_pred cCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC----CCCeEEEECCCCCCCCCCCCCCchhHHHHhc--
Q 016062 247 EDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS----KQPFLWVLRPGSADGLDPTDLLPDSFKETVE-- 320 (396)
Q Consensus 247 ~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-- 320 (396)
... .-++ +++++|.+--||-...-.+.+..++++++.+ +..+++.+.++. ..+.+...+.
T Consensus 196 ~~~---~~l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~ 261 (396)
T TIGR03492 196 PER---KPLL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL---------SLEKLQAILEDL 261 (396)
T ss_pred ccc---cccC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC---------CHHHHHHHHHhc
Confidence 110 0111 3456788888887553334445666666664 456777764432 1122221111
Q ss_pred -----------------CCcEEEeecCc-cccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc--cC--
Q 016062 321 -----------------KRGCIVNWAPQ-RQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS--RK-- 378 (396)
Q Consensus 321 -----------------~~~~~~~~vp~-~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~--~~-- 378 (396)
.++.+..+..+ .++++.+++ +|+-.|..| .|+...|+|+|++|.-..|. ||. +.
T Consensus 262 g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~ 337 (396)
T TIGR03492 262 GWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQS 337 (396)
T ss_pred CceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhH
Confidence 12445455544 569999999 999999777 99999999999999766676 876 11
Q ss_pred ---------CCCcHHHHHHHHHHHh
Q 016062 379 ---------GGSSYNLLNELVDHIM 394 (396)
Q Consensus 379 ---------~~~~~~~l~~~~~~il 394 (396)
-+.+.+.|.+.+.+++
T Consensus 338 ~l~g~~~~l~~~~~~~l~~~l~~ll 362 (396)
T TIGR03492 338 RLLGGSVFLASKNPEQAAQVVRQLL 362 (396)
T ss_pred hhcCCEEecCCCCHHHHHHHHHHHH
Confidence 1223366777666665
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.94 E-value=8.1e-07 Score=81.74 Aligned_cols=123 Identities=16% Similarity=0.135 Sum_probs=69.1
Q ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHhC---CCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCccc---c
Q 016062 261 HSVIYVSFGSIALTGEKELAEMAWGLANS---KQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQ---V 334 (396)
Q Consensus 261 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~---l 334 (396)
.+.+++..|+... .+....++++++++ +.++++. +.+.... ..........++.+.+++++.+ +
T Consensus 190 ~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~-G~~~~~~-------~~~~~~~~~~~v~~~g~~~~~~~~~~ 259 (359)
T cd03823 190 GRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIV-GNGLELE-------EESYELEGDPRVEFLGAYPQEEIDDF 259 (359)
T ss_pred CceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEE-cCchhhh-------HHHHhhcCCCeEEEeCCCCHHHHHHH
Confidence 4456667787654 23344555555553 4454433 3321000 0000002347888999997654 6
Q ss_pred ccCccccceee-----ccchhhHHHHHHcCCceeeecccC--ccc---cccccCCCCcHHHHHHHHHHHhc
Q 016062 335 LAHSAVGGFWT-----HCGWNSILESISEGVPMICRSAFG--DQK---VNASRKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 335 L~~~~~~~~It-----HGG~~s~~eal~~GvP~v~~P~~~--DQ~---~na~~~~~~~~~~l~~~~~~il~ 395 (396)
+..+++ +|. -|...++.||+++|+|+|+.+..+ |-. .++.--...+..++.+++.++++
T Consensus 260 ~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 260 YAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred HHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 888888 663 233448999999999999977643 111 12222222336777777777653
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.94 E-value=1.1e-07 Score=80.46 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=76.2
Q ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHh--cCCcEEEeecCccc-cccC
Q 016062 261 HSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETV--EKRGCIVNWAPQRQ-VLAH 337 (396)
Q Consensus 261 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vp~~~-lL~~ 337 (396)
+.-|+|++|... +......++..+.+.++..-++++.. .+.++++.++. .+|+.+......++ +++.
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke 227 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKE 227 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--------CcchhHHHHHHhhCCCeeeEecchhHHHHHHh
Confidence 345999998763 45567778888888775544555532 22345555554 36777776666544 9989
Q ss_pred ccccceeeccchhhHHHHHHcCCceeeecccCccccccc
Q 016062 338 SAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS 376 (396)
Q Consensus 338 ~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 376 (396)
+++ .|+-||. |+.|++.-|+|.+++|+..-|--.|.
T Consensus 228 ~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~ 263 (318)
T COG3980 228 ADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAK 263 (318)
T ss_pred cch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHH
Confidence 888 9999986 89999999999999999999988887
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.84 E-value=1.1e-05 Score=75.69 Aligned_cols=117 Identities=13% Similarity=0.133 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRA 89 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (396)
||+|+-....|. +..||++|+++||+|++++......... |++.+.++..-............ ..........
T Consensus 1 ~il~~~~~~p~~---~~~la~~L~~~G~~v~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 73 (396)
T cd03818 1 RILFVHQNFPGQ---FRHLAPALAAQGHEVVFLTEPNAAPPPG---GVRVVRYRPPRGPTSGTHPYLRE-FEEAVLRGQA 73 (396)
T ss_pred CEEEECCCCchh---HHHHHHHHHHCCCEEEEEecCCCCCCCC---CeeEEEecCCCCCCCCCCccchh-HHHHHHHHHH
Confidence 467775444443 6789999999999999999855433221 68888876432221111111111 1111111122
Q ss_pred HHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHh-CCCeEEEeCc
Q 016062 90 PLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHL-KLPSIILYTL 134 (396)
Q Consensus 90 ~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~l-giP~v~~~~~ 134 (396)
.+ ..+..+...+-+||+|++......+..+.+.+ ++|.+.+...
T Consensus 74 ~~-~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~ 118 (396)
T cd03818 74 VA-RALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFEF 118 (396)
T ss_pred HH-HHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEee
Confidence 22 22233322211799999997665566676664 5898887543
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.81 E-value=3.2e-06 Score=79.28 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=49.2
Q ss_pred cCCcEEEeecCccc---cccCccccceeec----cchhhHHHHHHcCCceeeecccCcc-----ccccccCCCCcHHHHH
Q 016062 320 EKRGCIVNWAPQRQ---VLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAFGDQ-----KVNASRKGGSSYNLLN 387 (396)
Q Consensus 320 ~~~~~~~~~vp~~~---lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~~DQ-----~~na~~~~~~~~~~l~ 387 (396)
..|+.+.+|+|+.+ ++..+++ +++. |-..++.||+++|+|+|+-...+-+ ..++.--...+..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~ 359 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALA 359 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHH
Confidence 36788899999765 5888888 7743 3346899999999999987654321 1222222223467777
Q ss_pred HHHHHHhc
Q 016062 388 ELVDHIMS 395 (396)
Q Consensus 388 ~~~~~il~ 395 (396)
+.|.++++
T Consensus 360 ~~i~~l~~ 367 (398)
T cd03800 360 AALRRLLT 367 (398)
T ss_pred HHHHHHHh
Confidence 77776653
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.81 E-value=5.9e-06 Score=76.34 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=37.2
Q ss_pred cCCcEEEeecCccc---cccCccccceeec----cchhhHHHHHHcCCceeeeccc
Q 016062 320 EKRGCIVNWAPQRQ---VLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAF 368 (396)
Q Consensus 320 ~~~~~~~~~vp~~~---lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~ 368 (396)
.+|+.+.+++|+.+ ++..+++ +|.- |+.+++.||+++|+|+|+....
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~ 311 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDAP 311 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCCC
Confidence 46888999998755 6788888 6633 4457899999999999997664
No 53
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.79 E-value=8.7e-07 Score=79.64 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHch
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS-PHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCR 88 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (396)
||.+--.-. -|+.-+..+.++|.++||+|.+.+-+... ....+..|++++.+...- ......+.....+..
T Consensus 2 kIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-------~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 2 KIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-------DSLYGKLLESIERQY 73 (335)
T ss_pred eEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-------CCHHHHHHHHHHHHH
Confidence 444443322 39999999999999999999988874332 222234688888887321 222222222221111
Q ss_pred HHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCc
Q 016062 89 APLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 89 ~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 134 (396)
.+++.+.+. +||++|+- .++.+..+|.-+|+|+|.+.-+
T Consensus 74 ----~l~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 74 ----KLLKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred ----HHHHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEecC
Confidence 222222222 79999976 3577888999999999998765
No 54
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.78 E-value=5.1e-06 Score=77.22 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=45.6
Q ss_pred cCCcEEEeecCc-cccccCcccccee----eccchhhHHHHHHcCCceeeecccC--ccc---cccccCCCCcHHHHHHH
Q 016062 320 EKRGCIVNWAPQ-RQVLAHSAVGGFW----THCGWNSILESISEGVPMICRSAFG--DQK---VNASRKGGSSYNLLNEL 389 (396)
Q Consensus 320 ~~~~~~~~~vp~-~~lL~~~~~~~~I----tHGG~~s~~eal~~GvP~v~~P~~~--DQ~---~na~~~~~~~~~~l~~~ 389 (396)
.+++.+.++.++ ..++..+++ +| +-|...++.||+++|+|+|+....+ |-. .|+.--...+..++.+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~ 329 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEY 329 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHH
Confidence 357788887776 448888888 66 2344569999999999999965532 211 22221222345566666
Q ss_pred HHHHh
Q 016062 390 VDHIM 394 (396)
Q Consensus 390 ~~~il 394 (396)
+.+++
T Consensus 330 i~~l~ 334 (371)
T cd04962 330 ALSLL 334 (371)
T ss_pred HHHHH
Confidence 65554
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.78 E-value=4.1e-06 Score=77.01 Aligned_cols=296 Identities=16% Similarity=0.141 Sum_probs=146.0
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC-CCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHH
Q 016062 19 QGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNH-PDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRAPLQEALTR 97 (396)
Q Consensus 19 ~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (396)
.|+...+..+++.|.+.||+|++++........... ........ . ...... ...........+...++.
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRP-------P--PLLRVR-RLLLLLLLALRLRRLLRR 83 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecC-------C--cccccc-hhHHHHHHHHHHHHHhhh
Confidence 588999999999999999999999985443322110 00000000 0 000000 000000011111122222
Q ss_pred HHhcCCCcCEEEeCCchhHHH--HHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccccCCCCCCCCCCC
Q 016062 98 MIAKQEDLPCVIHDGIMHCAE--AVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLELVPGLDPLRFKD 175 (396)
Q Consensus 98 l~~~~~~~D~vI~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 175 (396)
. ++|+|++........ ..+...++|.+............. .
T Consensus 84 ~-----~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-----------------------------~--- 126 (374)
T cd03801 84 E-----RFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGN-----------------------------E--- 126 (374)
T ss_pred c-----CCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcccc-----------------------------c---
Confidence 2 799999998664433 578889999998766532110000 0
Q ss_pred CCCCcCCCCCchHHHHHH--hhhcCCccEEEEccccccchhHHHHHHhhCCC---CeEEecccccCCCCCCCCccccCch
Q 016062 176 LPASSFGNLSTLLPFTAI--LRDIGSSSAIILNTNECLEQSSIVQFQEQYPV---PIFSIGPMHLAAPASSCSLLKEDTS 250 (396)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~---pv~~vGp~~~~~~~~~~~~~~~~~~ 250 (396)
.......... ......++.+++.+....+ .....++. ++..+..-.....- . +....
T Consensus 127 --------~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~---~--~~~~~ 188 (374)
T cd03801 127 --------LGLLLKLARALERRALRRADRIIAVSEATRE-----ELRELGGVPPEKITVIPNGVDTERF---R--PAPRA 188 (374)
T ss_pred --------hhHHHHHHHHHHHHHHHhCCEEEEecHHHHH-----HHHhcCCCCCCcEEEecCccccccc---C--ccchH
Confidence 0000111111 2234556777776654332 22333332 34444332221110 0 00000
Q ss_pred hhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchhHHH-----Hhc
Q 016062 251 CIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDSFKE-----TVE 320 (396)
Q Consensus 251 l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~-----~~~ 320 (396)
...-... .+++.+++.+|+.. ..+.+..+++++... +.+++ .++.+. ..+.+.. ..+
T Consensus 189 ~~~~~~~-~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~-i~G~~~---------~~~~~~~~~~~~~~~ 255 (374)
T cd03801 189 ARRRLGI-PEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLV-IVGDGP---------LREELEALAAELGLG 255 (374)
T ss_pred HHhhcCC-cCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEE-EEeCcH---------HHHHHHHHHHHhCCC
Confidence 0111111 22345666777765 333445555665543 23333 333221 1122221 245
Q ss_pred CCcEEEeecCccc---cccCccccceee----ccchhhHHHHHHcCCceeeeccc--Ccccc---ccccCCCCcHHHHHH
Q 016062 321 KRGCIVNWAPQRQ---VLAHSAVGGFWT----HCGWNSILESISEGVPMICRSAF--GDQKV---NASRKGGSSYNLLNE 388 (396)
Q Consensus 321 ~~~~~~~~vp~~~---lL~~~~~~~~It----HGG~~s~~eal~~GvP~v~~P~~--~DQ~~---na~~~~~~~~~~l~~ 388 (396)
.++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.... .|... ++.--...+..++.+
T Consensus 256 ~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 333 (374)
T cd03801 256 DRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAE 333 (374)
T ss_pred cceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHH
Confidence 7889999997544 7888888 763 35677999999999999997752 33332 222222333567777
Q ss_pred HHHHHh
Q 016062 389 LVDHIM 394 (396)
Q Consensus 389 ~~~~il 394 (396)
.+.+++
T Consensus 334 ~i~~~~ 339 (374)
T cd03801 334 AILRLL 339 (374)
T ss_pred HHHHHH
Confidence 776654
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.78 E-value=1.3e-05 Score=73.49 Aligned_cols=303 Identities=10% Similarity=0.081 Sum_probs=148.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRA 89 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (396)
||++++....|+...+..++++|.++||+|++++............+++...++.... .......+...
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------ 69 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRR-----GINPFKDLKAL------ 69 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecccccc-----ccChHhHHHHH------
Confidence 4777777777889999999999999999999999865443222235677766653321 01111111111
Q ss_pred HHHHHHHHHHhcCCCcCEEEeCCchh--HHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccccCCC
Q 016062 90 PLQEALTRMIAKQEDLPCVIHDGIMH--CAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLELVPG 167 (396)
Q Consensus 90 ~l~~~~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 167 (396)
..+.+.+... +||+|++..... .+..+++..+.|.+.......... .. .
T Consensus 70 --~~~~~~~~~~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~------~---------------- 120 (359)
T cd03808 70 --LRLYRLLRKE--RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV---FT------S---------------- 120 (359)
T ss_pred --HHHHHHHHhc--CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh---hc------c----------------
Confidence 1122222222 799999886542 234445546666665433211000 00 0
Q ss_pred CCCCCCCCCCCCcCCCCCchHHHHHH--hhhcCCccEEEEccccccchhHHHHHHhhCC---CCeEEecccccCCCCCCC
Q 016062 168 LDPLRFKDLPASSFGNLSTLLPFTAI--LRDIGSSSAIILNTNECLEQSSIVQFQEQYP---VPIFSIGPMHLAAPASSC 242 (396)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~---~pv~~vGp~~~~~~~~~~ 242 (396)
. ......+.. ......++.++..+....+ ....... ...+.+.+...+...
T Consensus 121 ------~----------~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--- 176 (359)
T cd03808 121 ------G----------GLKRRLYLLLERLALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVLIPGSGVDLDR--- 176 (359)
T ss_pred ------c----------hhHHHHHHHHHHHHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEEecCCCCChhh---
Confidence 0 000111111 1112445667666643332 1222211 123333333222111
Q ss_pred CccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchh-HH
Q 016062 243 SLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDS-FK 316 (396)
Q Consensus 243 ~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~-~~ 316 (396)
.... ... ..+++.+++..|+... .+-...++++++.. +.++++ ++.+.... . .... +.
T Consensus 177 --~~~~--~~~----~~~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~~~l~i-~G~~~~~~-~----~~~~~~~ 240 (359)
T cd03808 177 --FSPS--PEP----IPEDDPVFLFVARLLK--DKGIDELLEAARILKAKGPNVRLLL-VGDGDEEN-P----AAILEIE 240 (359)
T ss_pred --cCcc--ccc----cCCCCcEEEEEecccc--ccCHHHHHHHHHHHHhcCCCeEEEE-EcCCCcch-h----hHHHHHH
Confidence 0001 000 1234567777787654 22234444444432 334333 33332111 0 0000 11
Q ss_pred H-HhcCCcEEEeecCc-cccccCccccceeecc----chhhHHHHHHcCCceeeeccc--Ccccccc---ccCCCCcHHH
Q 016062 317 E-TVEKRGCIVNWAPQ-RQVLAHSAVGGFWTHC----GWNSILESISEGVPMICRSAF--GDQKVNA---SRKGGSSYNL 385 (396)
Q Consensus 317 ~-~~~~~~~~~~~vp~-~~lL~~~~~~~~ItHG----G~~s~~eal~~GvP~v~~P~~--~DQ~~na---~~~~~~~~~~ 385 (396)
. ....++.+.++..+ ..++..+++ +|.-. -.+++.||+++|+|+|+-... .|...+. .-....+..+
T Consensus 241 ~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~ 318 (359)
T cd03808 241 KLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEA 318 (359)
T ss_pred hcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCHHH
Confidence 1 12457777777555 448888888 77543 367899999999999996653 2332222 2222335667
Q ss_pred HHHHHHHHh
Q 016062 386 LNELVDHIM 394 (396)
Q Consensus 386 l~~~~~~il 394 (396)
+.+.+.+++
T Consensus 319 ~~~~i~~l~ 327 (359)
T cd03808 319 LADAIERLI 327 (359)
T ss_pred HHHHHHHHH
Confidence 777776654
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.71 E-value=1.8e-05 Score=74.71 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=70.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC--CCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHA--SNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINL 85 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~--~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
.+||++++..-.|+-..+..+|++|+++||+|++++........ ....|+.++.++..- .. .......+.....
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~-~~---~~~~~~~~~~~~~ 78 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPP-QR---LNKLPFLLFAPLK 78 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCc-cc---cccchHHHHHHHH
Confidence 46888888877788888899999999999999999875332111 233678888775321 00 1111122221111
Q ss_pred HchHHHHHHHHHHHhcCCCcCEEEeCCch-----hHHHHHHHHhCCCeEEEeCc
Q 016062 86 NCRAPLQEALTRMIAKQEDLPCVIHDGIM-----HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 86 ~~~~~l~~~~~~l~~~~~~~D~vI~D~~~-----~~~~~~A~~lgiP~v~~~~~ 134 (396)
... .+..++..+.... ++|+|++.... ..+..++...++|+|..++.
T Consensus 79 ~~~-~~~~~~~~l~~~~-~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~ 130 (415)
T cd03816 79 VLW-QFFSLLWLLYKLR-PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHN 130 (415)
T ss_pred HHH-HHHHHHHHHHhcC-CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCC
Confidence 111 1112222222222 79999985421 12344567789999886554
No 58
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.68 E-value=1.2e-06 Score=81.27 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=76.4
Q ss_pred CCeEEEEEcCccccC-CHHHHHHHHHHHHhCCC-CeEEEECCCCCCCCCCCCCCchhHHHHh---cCCcEEEeecCcc--
Q 016062 260 QHSVIYVSFGSIALT-GEKELAEMAWGLANSKQ-PFLWVLRPGSADGLDPTDLLPDSFKETV---EKRGCIVNWAPQR-- 332 (396)
Q Consensus 260 ~~~vv~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~---~~~~~~~~~vp~~-- 332 (396)
+++.|++++|..... ..+.+..+++|+++... ++.+.+.... ... +.+-+.. ... .+|+.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~-~~~---~~l~~~~-~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP-RTR---PRIREAG-LEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC-ChH---HHHHHHH-HhhccCCCCEEEECCcCHHHH
Confidence 456777777775542 45677888888887533 2444433221 100 0111111 111 3577777665543
Q ss_pred -ccccCccccceeeccchhhHHHHHHcCCceeeecccCcccc---ccc-cCCCCcHHHHHHHHHHHhc
Q 016062 333 -QVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKV---NAS-RKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 333 -~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~---na~-~~~~~~~~~l~~~~~~il~ 395 (396)
.++..+++ +|+..| |.+.||.+.|+|+|+++...+... |.. -.-+.+..++.+++.++++
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~ 336 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTERPETVESGTNVLVGTDPEAILAAIEKLLS 336 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCccchhhheeeEEecCCCHHHHHHHHHHHhc
Confidence 46778888 999999 778899999999999975443222 221 1111246788888887764
No 59
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.68 E-value=2.3e-05 Score=74.04 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=68.3
Q ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHhC----CCCeEEEECCCCCCCCCCCCCCchhHHHHh----cCCcEEEeecCcc
Q 016062 261 HSVIYVSFGSIALTGEKELAEMAWGLANS----KQPFLWVLRPGSADGLDPTDLLPDSFKETV----EKRGCIVNWAPQR 332 (396)
Q Consensus 261 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~----~~~~~~~~~vp~~ 332 (396)
++.+++..|+.. ..+-+..+++|++++ +.+++ .++.+. ..+.+++.. -+|+.+.+|+|+.
T Consensus 228 ~~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g~---------~~~~l~~~~~~~~l~~v~f~G~~~~~ 295 (412)
T PRK10307 228 GKKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQGG---------GKARLEKMAQCRGLPNVHFLPLQPYD 295 (412)
T ss_pred CCEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCCh---------hHHHHHHHHHHcCCCceEEeCCCCHH
Confidence 344566678775 334556667777654 23333 344321 112222211 2478888999865
Q ss_pred c---cccCccccceeeccch------hhHHHHHHcCCceeeecccC----ccc-cccccCCCCcHHHHHHHHHHHh
Q 016062 333 Q---VLAHSAVGGFWTHCGW------NSILESISEGVPMICRSAFG----DQK-VNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 333 ~---lL~~~~~~~~ItHGG~------~s~~eal~~GvP~v~~P~~~----DQ~-~na~~~~~~~~~~l~~~~~~il 394 (396)
+ +++.+++..+.+..+. +.+.|++++|+|+|+....+ |.. .|+.--...+..+|.++|.+++
T Consensus 296 ~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~~~G~~~~~~d~~~la~~i~~l~ 371 (412)
T PRK10307 296 RLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVEGIGVCVEPESVEALVAAIAALA 371 (412)
T ss_pred HHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHhCCcEEeCCCCHHHHHHHHHHHH
Confidence 4 7888888444444332 24689999999999976432 111 2322222234566777776665
No 60
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.63 E-value=2.3e-05 Score=73.92 Aligned_cols=109 Identities=11% Similarity=0.052 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEeCCCCCC---CCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHH
Q 016062 19 QGHITPMLQLGTILHSRGFSITVAHAQFNSP---HASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRAPLQEAL 95 (396)
Q Consensus 19 ~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (396)
.|--.-...||++|+++||+|+++++..... ......|+++..++...... .........+.......++..+
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 95 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEG----LDKEDLPTQLCAFTGGVLRAEA 95 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCccc----CCHHHHHHHHHHHHHHHHHHHh
Confidence 3666788999999999999999999753321 11112577777664321110 1111111111111111222222
Q ss_pred HHHHhcCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCc
Q 016062 96 TRMIAKQEDLPCVIHDGIM--HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 96 ~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~ 134 (396)
+.. ..++|+|-+.... ..+..+++.+++|+|.....
T Consensus 96 ~~~---~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~ 133 (405)
T TIGR03449 96 RHE---PGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHT 133 (405)
T ss_pred hcc---CCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccc
Confidence 221 1179999877633 34556778899999886654
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.60 E-value=1.3e-05 Score=74.26 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=47.8
Q ss_pred hcCCcEEEeecC-cc---ccccCccccceeec----cchhhHHHHHHcCCceeeeccc--Ccccccc---ccCCCCcHHH
Q 016062 319 VEKRGCIVNWAP-QR---QVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAF--GDQKVNA---SRKGGSSYNL 385 (396)
Q Consensus 319 ~~~~~~~~~~vp-~~---~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~--~DQ~~na---~~~~~~~~~~ 385 (396)
...++...+|++ +. .+++.+++ +|.- |..+++.||+++|+|+|+.... .|...+. --....+..+
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~ 319 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPED 319 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHH
Confidence 346677889998 33 46888888 7764 3457999999999999986553 2322221 1222235566
Q ss_pred HHHHHHHHh
Q 016062 386 LNELVDHIM 394 (396)
Q Consensus 386 l~~~~~~il 394 (396)
+.+++.+++
T Consensus 320 ~~~~l~~l~ 328 (365)
T cd03825 320 LAEGIEWLL 328 (365)
T ss_pred HHHHHHHHH
Confidence 666666655
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.59 E-value=5.5e-05 Score=69.66 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=48.6
Q ss_pred cCCcEEEeecCcc---ccccCcccccee----eccchhhHHHHHHcCCceeeecccCcccc--cc---ccCCCCcHHHHH
Q 016062 320 EKRGCIVNWAPQR---QVLAHSAVGGFW----THCGWNSILESISEGVPMICRSAFGDQKV--NA---SRKGGSSYNLLN 387 (396)
Q Consensus 320 ~~~~~~~~~vp~~---~lL~~~~~~~~I----tHGG~~s~~eal~~GvP~v~~P~~~DQ~~--na---~~~~~~~~~~l~ 387 (396)
.+|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+..+-+.. +. --....+..++.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 335 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDPEALA 335 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCHHHHH
Confidence 4788899999874 46777787 66 33567789999999999998765432111 11 112233556666
Q ss_pred HHHHHHhc
Q 016062 388 ELVDHIMS 395 (396)
Q Consensus 388 ~~~~~il~ 395 (396)
+++.++++
T Consensus 336 ~~i~~~~~ 343 (377)
T cd03798 336 EAILRLLA 343 (377)
T ss_pred HHHHHHhc
Confidence 67766653
No 63
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.57 E-value=3.4e-05 Score=72.56 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=61.4
Q ss_pred EEEEcC---CC-CCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC--CCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHH
Q 016062 11 VVLVPI---PL-QGHITPMLQLGTILHSRGFSITVAHAQFNSPH--ASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNIN 84 (396)
Q Consensus 11 il~~~~---~~-~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~--~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
|++++. |. .|--.-...++++|+++||+|+++++...... .....+++...+|............ ...
T Consensus 2 I~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~---~~~--- 75 (398)
T cd03796 2 ICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPT---FFG--- 75 (398)
T ss_pred eeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccc---hhh---
Confidence 555553 22 24556789999999999999999997432111 1112466666665321111100111 111
Q ss_pred HHchHHHHHHHHHHHhcCCCcCEEEeCCch----hHHHHHHHHhCCCeEEEeCc
Q 016062 85 LNCRAPLQEALTRMIAKQEDLPCVIHDGIM----HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 85 ~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~----~~~~~~A~~lgiP~v~~~~~ 134 (396)
....++..+++. +||+|.+.... ..+..+++.+++|.|...+.
T Consensus 76 --~~~~l~~~~~~~-----~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~ 122 (398)
T cd03796 76 --TFPLLRNILIRE-----RITIVHGHQAFSALAHEALLHARTMGLKTVFTDHS 122 (398)
T ss_pred --hHHHHHHHHHhc-----CCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecc
Confidence 111222333322 79999988633 22456788999999886443
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.56 E-value=4.8e-05 Score=70.13 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=73.3
Q ss_pred eEEEEEcCccccCCHHHHHHHHHHHHhCC-CCeEEEECCCCCCCCCCCCCCchhHHH-----HhcCCcEEEeecCcc---
Q 016062 262 SVIYVSFGSIALTGEKELAEMAWGLANSK-QPFLWVLRPGSADGLDPTDLLPDSFKE-----TVEKRGCIVNWAPQR--- 332 (396)
Q Consensus 262 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~~~~~~~vp~~--- 332 (396)
+.+++..|+.. ..+-...+++++++.. .++++...+. ..+.+.+ ....||.+.+|+|+.
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~----------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP----------LEAELEALAAALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh----------hHHHHHHHHHhcCCcceEEEcCCCCHHHHH
Confidence 34566777764 3345666888888776 4444443221 1122222 234789999999974
Q ss_pred ccccCccccceee---ccc-hhhHHHHHHcCCceeeecccCccc------cccccCCCCcHHHHHHHHHHHhc
Q 016062 333 QVLAHSAVGGFWT---HCG-WNSILESISEGVPMICRSAFGDQK------VNASRKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 333 ~lL~~~~~~~~It---HGG-~~s~~eal~~GvP~v~~P~~~DQ~------~na~~~~~~~~~~l~~~~~~il~ 395 (396)
.+++.+++.++-+ +.| ..++.||+++|+|+|+....+.+. .|+.--...+..++.+++.++++
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 4777788833333 234 347999999999999976544322 22222223456777777777653
No 65
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.52 E-value=0.00016 Score=65.84 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=47.4
Q ss_pred cCCcEEEeecCc-cccccCccccceeecc----chhhHHHHHHcCCceeeecccCcccc------ccccCCCCcHHHHHH
Q 016062 320 EKRGCIVNWAPQ-RQVLAHSAVGGFWTHC----GWNSILESISEGVPMICRSAFGDQKV------NASRKGGSSYNLLNE 388 (396)
Q Consensus 320 ~~~~~~~~~vp~-~~lL~~~~~~~~ItHG----G~~s~~eal~~GvP~v~~P~~~DQ~~------na~~~~~~~~~~l~~ 388 (396)
..++.+.++... ..++..+++ +|.-. ..+++.||+++|+|+|+.+..+.+.. ++.--...+..++.+
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 311 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAE 311 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHH
Confidence 356666666443 458888887 66553 25789999999999998765433221 222223334577777
Q ss_pred HHHHHhc
Q 016062 389 LVDHIMS 395 (396)
Q Consensus 389 ~~~~il~ 395 (396)
.+.++++
T Consensus 312 ~i~~ll~ 318 (348)
T cd03820 312 ALLRLME 318 (348)
T ss_pred HHHHHHc
Confidence 7777653
No 66
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.50 E-value=7.5e-05 Score=69.99 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=46.3
Q ss_pred cCCcEEEeecCcc---ccccCccccceeec---cc-hhhHHHHHHcCCceeeecccC--ccccc---cccCCCCcHHHHH
Q 016062 320 EKRGCIVNWAPQR---QVLAHSAVGGFWTH---CG-WNSILESISEGVPMICRSAFG--DQKVN---ASRKGGSSYNLLN 387 (396)
Q Consensus 320 ~~~~~~~~~vp~~---~lL~~~~~~~~ItH---GG-~~s~~eal~~GvP~v~~P~~~--DQ~~n---a~~~~~~~~~~l~ 387 (396)
.+|+.+.+++|+. .+|..+++ ++.. -| ..++.||+++|+|+|+.-..+ |.-.+ +.-... +..++.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~~~~~a 355 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEP-TPEEFA 355 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCC-CHHHHH
Confidence 4688999999875 47888887 6632 22 357899999999999864432 32222 211122 456676
Q ss_pred HHHHHHh
Q 016062 388 ELVDHIM 394 (396)
Q Consensus 388 ~~~~~il 394 (396)
+.+.+++
T Consensus 356 ~~i~~l~ 362 (392)
T cd03805 356 EAMLKLA 362 (392)
T ss_pred HHHHHHH
Confidence 6666655
No 67
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.46 E-value=5.2e-05 Score=71.38 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=62.6
Q ss_pred EcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchhHHHHhcC---CcEE-EeecCccccccC
Q 016062 267 SFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDSFKETVEK---RGCI-VNWAPQRQVLAH 337 (396)
Q Consensus 267 s~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~---~~~~-~~~vp~~~lL~~ 337 (396)
..|-.. ..+-+..+++|++.+ +.+ ++.++.+. .-+.++...++ ++.+ ..+.+..+++..
T Consensus 233 ~vGRL~--~eK~~~~Li~a~~~l~~~~~~~~-l~ivGdGp---------~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~ 300 (462)
T PLN02846 233 YIGKMV--WSKGYKELLKLLHKHQKELSGLE-VDLYGSGE---------DSDEVKAAAEKLELDVRVYPGRDHADPLFHD 300 (462)
T ss_pred EEecCc--ccCCHHHHHHHHHHHHhhCCCeE-EEEECCCc---------cHHHHHHHHHhcCCcEEEECCCCCHHHHHHh
Confidence 345544 345566667776642 223 44455442 12333333321 2223 355555568888
Q ss_pred ccccceeec----cchhhHHHHHHcCCceeeecccC----ccccccccCCCCcHHHHHHHHHHHh
Q 016062 338 SAVGGFWTH----CGWNSILESISEGVPMICRSAFG----DQKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 338 ~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~~----DQ~~na~~~~~~~~~~l~~~~~~il 394 (396)
.++ ||.= |=.+++.||+++|+|+|+.-..+ ++..|+..- .+..++.+++.++|
T Consensus 301 ~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~~~v~~~~ng~~~--~~~~~~a~ai~~~l 361 (462)
T PLN02846 301 YKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSNEFFKQFPNCRTY--DDGKGFVRATLKAL 361 (462)
T ss_pred CCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCcceeecCCceEec--CCHHHHHHHHHHHH
Confidence 887 8866 44678999999999999975533 334444411 13455556665554
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.46 E-value=0.00023 Score=65.63 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=46.3
Q ss_pred cCCcEEEeecCccc---cccCccccceeec----cchhhHHHHHHcCCceeeecccC--ccccc-cccCCCCcHHHHHHH
Q 016062 320 EKRGCIVNWAPQRQ---VLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAFG--DQKVN-ASRKGGSSYNLLNEL 389 (396)
Q Consensus 320 ~~~~~~~~~vp~~~---lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~~--DQ~~n-a~~~~~~~~~~l~~~ 389 (396)
.+++.+.+|+++.+ ++..+++ +|.- |-.+++.||+++|+|+|+....+ |...+ ..-.-..+..++.++
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELIEYGCGWVVDDDVDALAAA 338 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhcCceEEeCCChHHHHHH
Confidence 57888899999644 5788888 5542 23568999999999999976532 22211 110011122666666
Q ss_pred HHHHhc
Q 016062 390 VDHIMS 395 (396)
Q Consensus 390 ~~~il~ 395 (396)
+.++++
T Consensus 339 i~~l~~ 344 (375)
T cd03821 339 LRRALE 344 (375)
T ss_pred HHHHHh
Confidence 666653
No 69
>PLN02275 transferase, transferring glycosyl groups
Probab=98.46 E-value=0.00017 Score=67.15 Aligned_cols=123 Identities=9% Similarity=-0.015 Sum_probs=69.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeCCCCCCC--CCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGF-SITVAHAQFNSPH--ASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNIN 84 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH-~Vt~~~~~~~~~~--~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
+.++.+...+-.|.-..+..++..|+++|| +|++++....... .....|++...++. +............+..+.
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~--~~~~~~~~~~~~~~~~~~ 81 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ--PRLLQRLPRVLYALALLL 81 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC--cccccccccchHHHHHHH
Confidence 456777777877888999999999999986 7999987443221 12335688888864 111111111222111111
Q ss_pred HHchHHHHHHHHHH-HhcCCCcCEEEeCCch-----hHHHHHHHHhCCCeEEEeCc
Q 016062 85 LNCRAPLQEALTRM-IAKQEDLPCVIHDGIM-----HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 85 ~~~~~~l~~~~~~l-~~~~~~~D~vI~D~~~-----~~~~~~A~~lgiP~v~~~~~ 134 (396)
.. ...+..++..+ .... +||+|++.... ..+..++...++|+|..++.
T Consensus 82 ~~-~~~~~~~~~~~~~~~~-~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 135 (371)
T PLN02275 82 KV-AIQFLMLLWFLCVKIP-RPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHN 135 (371)
T ss_pred HH-HHHHHHHHHHHHhhCC-CCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCC
Confidence 10 01112222221 1122 89999985322 12345677889999887654
No 70
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.45 E-value=7.2e-05 Score=68.96 Aligned_cols=98 Identities=19% Similarity=0.117 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHHHH
Q 016062 20 GHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRAPLQEALTRMI 99 (396)
Q Consensus 20 GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 99 (396)
|-=.-+..||++|+++||+|+++++...........|++++.++..- ......+..+ ..+...+++
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-----~~l~~~~~~-- 76 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKLPFIS-------KNPLRILLNV-----ARLRRLIRE-- 76 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEEccccc-------cchhhhHHHH-----HHHHHHHHH--
Confidence 55566889999999999999999874332211122466666554210 1111111111 111222222
Q ss_pred hcCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCc
Q 016062 100 AKQEDLPCVIHDGIM--HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 100 ~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~ 134 (396)
. +||+|++.... +.+..+++.+++|++...+.
T Consensus 77 -~--~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 110 (355)
T cd03819 77 -E--KVDIVHARSRAPAWSAYLAARRTRPPFVTTVHG 110 (355)
T ss_pred -c--CCCEEEECCCchhHHHHHHHHhcCCCEEEEeCC
Confidence 2 79999988643 33455678889999987654
No 71
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.42 E-value=0.0002 Score=65.99 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=47.2
Q ss_pred hcCCcEEEe-ecCcc---ccccCccccceee----c--cchhhHHHHHHcCCceeeecccC-ccc---cccccCCCCcHH
Q 016062 319 VEKRGCIVN-WAPQR---QVLAHSAVGGFWT----H--CGWNSILESISEGVPMICRSAFG-DQK---VNASRKGGSSYN 384 (396)
Q Consensus 319 ~~~~~~~~~-~vp~~---~lL~~~~~~~~It----H--GG~~s~~eal~~GvP~v~~P~~~-DQ~---~na~~~~~~~~~ 384 (396)
+.+|+.+.. |+|+. .+++.+++ +|. - |..+++.||+++|+|+|+-+..+ +.. .++.--...+..
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~ 322 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTGLLVPPGDPA 322 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCChheeeeCCCcEEEcCCCHH
Confidence 346777774 48864 47888888 662 2 44568999999999999987644 221 122212223456
Q ss_pred HHHHHHHHHhc
Q 016062 385 LLNELVDHIMS 395 (396)
Q Consensus 385 ~l~~~~~~il~ 395 (396)
++.+++.++++
T Consensus 323 ~~~~~l~~l~~ 333 (366)
T cd03822 323 ALAEAIRRLLA 333 (366)
T ss_pred HHHHHHHHHHc
Confidence 67777766653
No 72
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.42 E-value=8.3e-05 Score=68.74 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=55.8
Q ss_pred EEEcCccccCCHHHHHHHHHHHHhCC--CCeEEEECCCCCCCCCCCCCCchhHH--HHhcCCcEEEeecCccc---cccC
Q 016062 265 YVSFGSIALTGEKELAEMAWGLANSK--QPFLWVLRPGSADGLDPTDLLPDSFK--ETVEKRGCIVNWAPQRQ---VLAH 337 (396)
Q Consensus 265 ~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~lp~~~~--~~~~~~~~~~~~vp~~~---lL~~ 337 (396)
++..|+... .+-+..+++|+++.. .+++ .++.+.... .+-+.+. ....++|.+.+++++.+ ++..
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~-ivG~~~~~~-----~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLV-IVGNADHNT-----PYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEE-EEcCCCCcc-----hHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 345677653 344556777777654 4443 334321110 0112222 12357888999999864 5666
Q ss_pred ccccceeeccch-----hhHHHHHHcCCceeeeccc
Q 016062 338 SAVGGFWTHCGW-----NSILESISEGVPMICRSAF 368 (396)
Q Consensus 338 ~~~~~~ItHGG~-----~s~~eal~~GvP~v~~P~~ 368 (396)
+++ ++-+.-. +++.||+++|+|+|+....
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~ 301 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNP 301 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCC
Confidence 676 5554332 4799999999999986543
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.40 E-value=0.00013 Score=66.49 Aligned_cols=94 Identities=15% Similarity=0.264 Sum_probs=56.1
Q ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchhHH---HH--hcCCcEEEeecC
Q 016062 261 HSVIYVSFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDSFK---ET--VEKRGCIVNWAP 330 (396)
Q Consensus 261 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~---~~--~~~~~~~~~~vp 330 (396)
++.+++..|+... .+-...++++++.+ +.++++ ++.+. ..+.+. ++ ..+++.+.++++
T Consensus 188 ~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i-~G~~~---------~~~~~~~~~~~~~~~~~v~~~g~~~ 255 (353)
T cd03811 188 DGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVI-LGDGP---------LREELEALAKELGLADRVHFLGFQS 255 (353)
T ss_pred CceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEE-EcCCc---------cHHHHHHHHHhcCCCccEEEecccC
Confidence 4566777787652 33345566666553 234333 33221 111111 11 246778888877
Q ss_pred c-cccccCccccceeec----cchhhHHHHHHcCCceeeeccc
Q 016062 331 Q-RQVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAF 368 (396)
Q Consensus 331 ~-~~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~ 368 (396)
+ .+++..+++ +|.- |..+++.||+++|+|+|+....
T Consensus 256 ~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~ 296 (353)
T cd03811 256 NPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP 296 (353)
T ss_pred CHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC
Confidence 6 458888888 6632 4456899999999999986553
No 74
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.38 E-value=0.00022 Score=65.69 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=48.4
Q ss_pred cCCcEEEeecCccc---cccCccccceee----------ccchhhHHHHHHcCCceeeecccC--c---cccccccCCCC
Q 016062 320 EKRGCIVNWAPQRQ---VLAHSAVGGFWT----------HCGWNSILESISEGVPMICRSAFG--D---QKVNASRKGGS 381 (396)
Q Consensus 320 ~~~~~~~~~vp~~~---lL~~~~~~~~It----------HGG~~s~~eal~~GvP~v~~P~~~--D---Q~~na~~~~~~ 381 (396)
++|+.+.+++|+.+ ++..+++ +|. -|.-+++.||+++|+|+|+....+ | +..|+.--...
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~ 312 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPPG 312 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCCC
Confidence 57888999998644 7778887 665 344579999999999999876532 1 11122222223
Q ss_pred cHHHHHHHHHHHh
Q 016062 382 SYNLLNELVDHIM 394 (396)
Q Consensus 382 ~~~~l~~~~~~il 394 (396)
+..++.+.+.+++
T Consensus 313 ~~~~l~~~i~~~~ 325 (355)
T cd03799 313 DPEALADAIERLL 325 (355)
T ss_pred CHHHHHHHHHHHH
Confidence 5677777777665
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.37 E-value=2.8e-05 Score=71.04 Aligned_cols=121 Identities=11% Similarity=-0.027 Sum_probs=69.1
Q ss_pred EEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHH--hcCCcEEEeecCccc---cccCc
Q 016062 264 IYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKET--VEKRGCIVNWAPQRQ---VLAHS 338 (396)
Q Consensus 264 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~~~~vp~~~---lL~~~ 338 (396)
+++..|... ..+-...+++++++.+.++++.-.+.. .. .+-...... ..+++.+.+++++.+ +++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~-~~-----~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD-PD-----YFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC-HH-----HHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 334457763 334445677888888777655433321 00 011111112 257889999999754 67888
Q ss_pred cccceee--ccc-hhhHHHHHHcCCceeeecccC--cccc---ccccCCCCcHHHHHHHHHHHh
Q 016062 339 AVGGFWT--HCG-WNSILESISEGVPMICRSAFG--DQKV---NASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 339 ~~~~~It--HGG-~~s~~eal~~GvP~v~~P~~~--DQ~~---na~~~~~~~~~~l~~~~~~il 394 (396)
++-++-+ +-| ..++.||+++|+|+|+-...+ |-.. |+..... ..++.+++.+++
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~--~~~l~~~l~~l~ 306 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDS--VEELAAAVARAD 306 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCC--HHHHHHHHHHHh
Confidence 8833323 234 458999999999999876532 2222 2221111 677777776654
No 76
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.35 E-value=3.7e-05 Score=72.94 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=56.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEE--EeC-CCCCCCCC--CCCCceEEeCCCCCCCCCCCCCCHHHHHHHHH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITV--AHA-QFNSPHAS--NHPDFTFLPLSDGSSSTPKASDDFIDFMSNIN 84 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~--~~~-~~~~~~~~--~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
+++.+=..+-|.+.-...|+++|.++++++.+ .+. +...+... ...++....+|-+.+
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~----------------- 113 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLP----------------- 113 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcH-----------------
Confidence 34444444559999999999999999866322 221 11111111 112344445553221
Q ss_pred HHchHHHHHHHHHHHhcCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEe
Q 016062 85 LNCRAPLQEALTRMIAKQEDLPCVIHDGIM--HCAEAVARHLKLPSIILY 132 (396)
Q Consensus 85 ~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~ 132 (396)
..++.+++.+ +||+|+..... +.....++..|+|.+.+.
T Consensus 114 ----~~~~~~l~~~-----~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 ----GAVRRFLRFW-----RPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred ----HHHHHHHHhh-----CCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 2334556666 79999865333 334556788999999864
No 77
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.32 E-value=1.7e-06 Score=65.89 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=64.3
Q ss_pred eEEEEEcCccccC---CHHHHHHHHHHHHhCCC-CeEEEECCCCCCCCCCCCCCchhHHHHhcC-CcEEEeecCc-cccc
Q 016062 262 SVIYVSFGSIALT---GEKELAEMAWGLANSKQ-PFLWVLRPGSADGLDPTDLLPDSFKETVEK-RGCIVNWAPQ-RQVL 335 (396)
Q Consensus 262 ~vv~vs~Gs~~~~---~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~~~~vp~-~~lL 335 (396)
..+||+-||..-. ..-.-....+.+.+.++ +.|+.++.+.... ..|...-.+..+ -+...+|-|- .+..
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~-----~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFF-----GDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCC-----CCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 4699999998641 12223447778888876 5667777663111 011110000111 1223577786 5577
Q ss_pred cCccccceeeccchhhHHHHHHcCCceeeecc
Q 016062 336 AHSAVGGFWTHCGWNSILESISEGVPMICRSA 367 (396)
Q Consensus 336 ~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~ 367 (396)
+.+++ +|+|+|.||++|.|..|+|.++++=
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeC
Confidence 77899 9999999999999999999999874
No 78
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.31 E-value=0.00021 Score=66.25 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=49.4
Q ss_pred hcCCcEEEeecCccc---cccCccccceeec----------cchhhHHHHHHcCCceeeecccC--c---cccccccCCC
Q 016062 319 VEKRGCIVNWAPQRQ---VLAHSAVGGFWTH----------CGWNSILESISEGVPMICRSAFG--D---QKVNASRKGG 380 (396)
Q Consensus 319 ~~~~~~~~~~vp~~~---lL~~~~~~~~ItH----------GG~~s~~eal~~GvP~v~~P~~~--D---Q~~na~~~~~ 380 (396)
+.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+..+ | ...|+.--..
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~ 320 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPE 320 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECC
Confidence 357788889998654 5888888 6532 33579999999999999877643 1 1122222223
Q ss_pred CcHHHHHHHHHHHhc
Q 016062 381 SSYNLLNELVDHIMS 395 (396)
Q Consensus 381 ~~~~~l~~~~~~il~ 395 (396)
.+..++.+++.++++
T Consensus 321 ~d~~~l~~~i~~l~~ 335 (367)
T cd05844 321 GDVAALAAALGRLLA 335 (367)
T ss_pred CCHHHHHHHHHHHHc
Confidence 355677777776653
No 79
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.28 E-value=0.00048 Score=70.43 Aligned_cols=116 Identities=9% Similarity=0.105 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-----------------------CCCCCCceEEeCCCCCCCCCCCCC
Q 016062 20 GHITPMLQLGTILHSRG--FSITVAHAQFNSPH-----------------------ASNHPDFTFLPLSDGSSSTPKASD 74 (396)
Q Consensus 20 GH~~p~l~la~~L~~rG--H~Vt~~~~~~~~~~-----------------------~~~~~gi~~~~~~~~~~~~~~~~~ 74 (396)
|+..=.+.||++|+++| |+|.++|-....+. ....+|++.+.+|.+-....-...
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke 275 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIPKE 275 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcCHH
Confidence 45666799999999999 99999886432211 011247888888765332222223
Q ss_pred CHHHHHHHHHHHchHHHHHH----HHHHHhcC-CCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCch
Q 016062 75 DFIDFMSNINLNCRAPLQEA----LTRMIAKQ-EDLPCVIHDGIM--HCAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~----~~~l~~~~-~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 135 (396)
.++..+..|.+.+...+..+ .+++.... ..||+|-+.... ..+..+++.+|||+|...++.
T Consensus 276 ~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~HSL 343 (1050)
T TIGR02468 276 ELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSL 343 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECccc
Confidence 44555555555544444332 22221111 149999988633 556789999999999987763
No 80
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.24 E-value=0.001 Score=63.47 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhCCC--eEEEEeCCCCC---------CCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHch
Q 016062 20 GHITPMLQLGTILHSRGF--SITVAHAQFNS---------PHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCR 88 (396)
Q Consensus 20 GH~~p~l~la~~L~~rGH--~Vt~~~~~~~~---------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (396)
|=-.-+..|+++|+++|| +|++++..... .......|++.+.++..-. ...........+.
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~-~~~~~~~~~~~~~------- 98 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPR-RYLRKELLWPYLD------- 98 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCC-CCcChhhhhhhHH-------
Confidence 344568899999999998 99999953111 1111125777777763211 0000011111111
Q ss_pred HHHHHHHHHHHhcCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCc
Q 016062 89 APLQEALTRMIAKQEDLPCVIHDGIM--HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 89 ~~l~~~~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~ 134 (396)
.....+.+.+.+...+||+|-+.... ..+..+++.+++|+|....+
T Consensus 99 ~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H~ 146 (439)
T TIGR02472 99 ELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTGHS 146 (439)
T ss_pred HHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEeccc
Confidence 11112222222221169999998633 34556788899999886554
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.21 E-value=0.0012 Score=60.85 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=46.7
Q ss_pred cCCcEEEeecCc-cccccCccccceeec----cchhhHHHHHHcCCceeeeccc--Ccccc-ccccCCCCcHHHHHHHHH
Q 016062 320 EKRGCIVNWAPQ-RQVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAF--GDQKV-NASRKGGSSYNLLNELVD 391 (396)
Q Consensus 320 ~~~~~~~~~vp~-~~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~--~DQ~~-na~~~~~~~~~~l~~~~~ 391 (396)
.+|+.+.+++.+ ..++..+++ +|.- |..+++.||+++|+|+|+-... .|-.. |+..-...+..++.+++.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~g~~~~~~~~~~~~~~i~ 321 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVATDAGGVREVVGDSGLIVPISDPEALANKID 321 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEecCCChhhEecCCceEeCCCCHHHHHHHHH
Confidence 357888887765 458888888 5543 2357899999999999985432 12111 112222245667777777
Q ss_pred HHh
Q 016062 392 HIM 394 (396)
Q Consensus 392 ~il 394 (396)
+++
T Consensus 322 ~ll 324 (360)
T cd04951 322 EIL 324 (360)
T ss_pred HHH
Confidence 775
No 82
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.11 E-value=0.0026 Score=58.31 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=45.8
Q ss_pred cCCcEEEeecCc-cccccCccccceeeccc----hhhHHHHHHcCCceeeecccC--cccc-ccccCCCCcHHHHHHHHH
Q 016062 320 EKRGCIVNWAPQ-RQVLAHSAVGGFWTHCG----WNSILESISEGVPMICRSAFG--DQKV-NASRKGGSSYNLLNELVD 391 (396)
Q Consensus 320 ~~~~~~~~~vp~-~~lL~~~~~~~~ItHGG----~~s~~eal~~GvP~v~~P~~~--DQ~~-na~~~~~~~~~~l~~~~~ 391 (396)
..++.+.+...+ ..++..+++ +|..+. .+++.||+++|+|+|+....+ |... ++.--...+..++.+.+.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~~g~~~~~~~~~~l~~~i~ 327 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDVGDNAELVGDTGFLVPPGDPEALAEAIE 327 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCCCChHHHhhcCCEEeCCCCHHHHHHHHH
Confidence 346666665544 458888888 776543 479999999999999865532 2211 222222234566777776
Q ss_pred HHhc
Q 016062 392 HIMS 395 (396)
Q Consensus 392 ~il~ 395 (396)
++++
T Consensus 328 ~l~~ 331 (365)
T cd03807 328 ALLA 331 (365)
T ss_pred HHHh
Confidence 6653
No 83
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.08 E-value=0.0005 Score=63.57 Aligned_cols=128 Identities=13% Similarity=0.213 Sum_probs=76.1
Q ss_pred CCeEEEEEcCccc--c-CCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHh--cCCcEEEeecCc---
Q 016062 260 QHSVIYVSFGSIA--L-TGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETV--EKRGCIVNWAPQ--- 331 (396)
Q Consensus 260 ~~~vv~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vp~--- 331 (396)
+++.|++++=-.. . ...+.+..+++++.+.+.++++...... .+.+ .+-+.+.... .+|+.+.+-+++
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~~~---~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AGSR---IINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CCch---HHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 3567777774432 3 4567899999999887766655543221 1100 0111222212 357888865554
Q ss_pred cccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc--cCCCCcHHHHHHHHHHHh
Q 016062 332 RQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS--RKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 332 ~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~--~~~~~~~~~l~~~~~~il 394 (396)
..+++++++ +||.++.+- .||.+.|+|+|.+--..+-...+. ..=+.+..++.+++.+++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~~R~e~~~~g~nvl~vg~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIGTRQKGRLRADSVIDVDPDKEEIVKAIEKLL 337 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeecCCchhhhhcCeEEEeCCCHHHHHHHHHHHh
Confidence 558889888 999886555 999999999998763222111111 111345677777776654
No 84
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.00 E-value=0.00018 Score=66.77 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=70.6
Q ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchhHHHHh--cCCcEEEeecCcc-
Q 016062 261 HSVIYVSFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDSFKETV--EKRGCIVNWAPQR- 332 (396)
Q Consensus 261 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vp~~- 332 (396)
+++|+++.+-... ..+.+..+++|+.++ +.++++...++. . .-+.+.+.. .+|+.+.+.+++.
T Consensus 197 ~~~vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--~------~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYPVHLNP--V------VREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEECCCCh--H------HHHHHHHHhCCCCCEEEECCCChHH
Confidence 4566665543222 124467778877663 345555433321 0 111122222 3578888766653
Q ss_pred --ccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc-cC---CCCcHHHHHHHHHHHh
Q 016062 333 --QVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS-RK---GGSSYNLLNELVDHIM 394 (396)
Q Consensus 333 --~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~-~~---~~~~~~~l~~~~~~il 394 (396)
.+++.+++ +|+-.|.. +.||.++|+|+|.++..++++..-. .. -+.+..++.+++.+++
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e~~~~g~~~lv~~d~~~i~~ai~~ll 332 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPETVEAGTNKLVGTDKENITKAAKRLL 332 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChHHHhcCceEEeCCCHHHHHHHHHHHH
Confidence 56778887 99977644 7999999999999866554432221 00 1135677777777765
No 85
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.98 E-value=0.0061 Score=56.12 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=49.2
Q ss_pred cCCcEEEeecCc-cccccCccccceeec----cchhhHHHHHHcCCceeeecccC--ccccccc--cCCCCcHHHHHHHH
Q 016062 320 EKRGCIVNWAPQ-RQVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAFG--DQKVNAS--RKGGSSYNLLNELV 390 (396)
Q Consensus 320 ~~~~~~~~~vp~-~~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~~--DQ~~na~--~~~~~~~~~l~~~~ 390 (396)
.+++.+.++..+ .+++..+++ +|.- |-.+++.||+++|+|+|+-...+ |...+.. -....+..++.++|
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i 325 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEI 325 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHH
Confidence 467888887555 458888888 6643 55679999999999999865533 3333322 11122357777887
Q ss_pred HHHhc
Q 016062 391 DHIMS 395 (396)
Q Consensus 391 ~~il~ 395 (396)
.++++
T Consensus 326 ~~l~~ 330 (358)
T cd03812 326 LKLKS 330 (358)
T ss_pred HHHHh
Confidence 77764
No 86
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.97 E-value=0.001 Score=61.62 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=68.8
Q ss_pred eEEEEEcCccccCCHHHHHHHHHHHHhCCCCe-EEEECCCCCCCCCCCCCCchhHHH-----HhcCCcEEEeecCc----
Q 016062 262 SVIYVSFGSIALTGEKELAEMAWGLANSKQPF-LWVLRPGSADGLDPTDLLPDSFKE-----TVEKRGCIVNWAPQ---- 331 (396)
Q Consensus 262 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~~~~~~~vp~---- 331 (396)
+.+++..|.......+.+..+++++.+....+ ++.++.+. .-+.+++ .+++|+.+.+|+++
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~---------~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~ 250 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS---------DFEKCKAYSRELGIEQRIIWHGWQSQPWEV 250 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc---------cHHHHHHHHHHcCCCCeEEEecccCCcHHH
Confidence 34556677764323345667778877753222 23334331 1122222 23578888998854
Q ss_pred -cccccCccccceee--c--cchhhHHHHHHcCCceeeec-ccC--ccc---cccccCCCCcHHHHHHHHHHHhc
Q 016062 332 -RQVLAHSAVGGFWT--H--CGWNSILESISEGVPMICRS-AFG--DQK---VNASRKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 332 -~~lL~~~~~~~~It--H--GG~~s~~eal~~GvP~v~~P-~~~--DQ~---~na~~~~~~~~~~l~~~~~~il~ 395 (396)
.+.++.+++ +|. + |-..++.||+++|+|+|+.- ..+ |.- .|+.--...+..++.++|.++++
T Consensus 251 ~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~ 323 (359)
T PRK09922 251 VQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVIS 323 (359)
T ss_pred HHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHh
Confidence 223445566 553 3 33679999999999999876 432 211 22222223466777777776653
No 87
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.94 E-value=0.0011 Score=61.19 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=48.6
Q ss_pred hcCCcEEEeecCcc---ccccCccccceeec----cchhhHHHHHHcCCceeeecc--cCccccccc-cCCCCcHHHHHH
Q 016062 319 VEKRGCIVNWAPQR---QVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSA--FGDQKVNAS-RKGGSSYNLLNE 388 (396)
Q Consensus 319 ~~~~~~~~~~vp~~---~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~--~~DQ~~na~-~~~~~~~~~l~~ 388 (396)
..+++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+-.. ..|...+.. --...+..++.+
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 328 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAGDAALYFDPLDPEALAA 328 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCCccceecCceeeeCCCCHHHHHH
Confidence 45788888999875 46778887 5532 345689999999999998554 334432222 222235667777
Q ss_pred HHHHHh
Q 016062 389 LVDHIM 394 (396)
Q Consensus 389 ~~~~il 394 (396)
.+.+++
T Consensus 329 ~i~~l~ 334 (365)
T cd03809 329 AIERLL 334 (365)
T ss_pred HHHHHh
Confidence 776654
No 88
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.93 E-value=0.0011 Score=61.14 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=74.2
Q ss_pred EEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCcc---ccccCcccc
Q 016062 265 YVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQR---QVLAHSAVG 341 (396)
Q Consensus 265 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~---~lL~~~~~~ 341 (396)
++..|+.. ..+-...+++|+++.+.+++++-.+. ..+.+++...+||.+.+++|+. .++..+++-
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~----------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~ 265 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP----------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAF 265 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh----------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEE
Confidence 44566654 33456778888888886655543322 2234444567899999999984 478888883
Q ss_pred ceeeccch-hhHHHHHHcCCceeeecccC--ccccc---cccCCCCcHHHHHHHHHHHhc
Q 016062 342 GFWTHCGW-NSILESISEGVPMICRSAFG--DQKVN---ASRKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 342 ~~ItHGG~-~s~~eal~~GvP~v~~P~~~--DQ~~n---a~~~~~~~~~~l~~~~~~il~ 395 (396)
++-+.-|. .++.||+++|+|+|+....+ |...+ +.--...+..++.++|.++++
T Consensus 266 v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~ 325 (351)
T cd03804 266 LFPAEEDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERFEK 325 (351)
T ss_pred EECCcCCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 32234443 46789999999999976533 32222 112223355667777777653
No 89
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.90 E-value=4.3e-05 Score=69.87 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=70.4
Q ss_pred CCCeEEEEEcCccccCC----HHHHHHHHHHHHhC-CCCeEEEECCCCCCCCCCCCCCchhHHHHhc--CCcEEEeecCc
Q 016062 259 TQHSVIYVSFGSIALTG----EKELAEMAWGLANS-KQPFLWVLRPGSADGLDPTDLLPDSFKETVE--KRGCIVNWAPQ 331 (396)
Q Consensus 259 ~~~~vv~vs~Gs~~~~~----~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~~~vp~ 331 (396)
.+++.|++++=...... ...+..+++++.+. +.++||.+..... .-..+.+.+. +|+.++.-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~--------~~~~i~~~l~~~~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR--------GSDIIIEKLKKYDNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH--------HHHHHHHHHTT-TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch--------HHHHHHHHhcccCCEEEECCCCH
Confidence 56789999984444433 34555566666665 6778888763210 1122222222 48888866654
Q ss_pred ---cccccCccccceeeccchhhHH-HHHHcCCceeee---cccCccccccc-cCCCCcHHHHHHHHHHHhc
Q 016062 332 ---RQVLAHSAVGGFWTHCGWNSIL-ESISEGVPMICR---SAFGDQKVNAS-RKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 332 ---~~lL~~~~~~~~ItHGG~~s~~-eal~~GvP~v~~---P~~~DQ~~na~-~~~~~~~~~l~~~~~~il~ 395 (396)
..+|+++++ +||..| +++ ||.+.|+|+|.+ .-..+-...+. -.=+.+...+.++++++++
T Consensus 250 ~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 250 EEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEEeCCCHHHHHHHHHHHHh
Confidence 568889888 999999 566 999999999999 33222222222 1133567777777777663
No 90
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.88 E-value=0.0097 Score=55.63 Aligned_cols=95 Identities=12% Similarity=0.183 Sum_probs=53.3
Q ss_pred EEEEEcCccccCCHHHHHHHHHHHHhC--CCCeEEEECCCCCCCCCCCCCCchhHHHH---hc---CCcEEE-eecCcc-
Q 016062 263 VIYVSFGSIALTGEKELAEMAWGLANS--KQPFLWVLRPGSADGLDPTDLLPDSFKET---VE---KRGCIV-NWAPQR- 332 (396)
Q Consensus 263 vv~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~---~~---~~~~~~-~~vp~~- 332 (396)
.+++..|... +.+-+..+++|+++. +.++++..++..... +-+.+.+. +. .++... .++++.
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE------VAEEVRQAVALLDRNRTGIIWINKMLPKEE 273 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH------HHHHHHHHHHHhccccCceEEecCCCCHHH
Confidence 3455667754 334566677777765 445554443321000 11222221 11 234433 567753
Q ss_pred --ccccCccccceee----ccchhhHHHHHHcCCceeeecc
Q 016062 333 --QVLAHSAVGGFWT----HCGWNSILESISEGVPMICRSA 367 (396)
Q Consensus 333 --~lL~~~~~~~~It----HGG~~s~~eal~~GvP~v~~P~ 367 (396)
.++..+++ +|. -|...++.||+++|+|+|+...
T Consensus 274 ~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~ 312 (388)
T TIGR02149 274 LVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT 312 (388)
T ss_pred HHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC
Confidence 47888888 664 2334578999999999998765
No 91
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.88 E-value=0.0013 Score=59.81 Aligned_cols=125 Identities=14% Similarity=0.016 Sum_probs=71.6
Q ss_pred CCCeEEecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCC-eEEEECCCCC
Q 016062 224 PVPIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQP-FLWVLRPGSA 302 (396)
Q Consensus 224 ~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~ 302 (396)
+.++.+||-...+... . .. .+ ++ ++++|.+--||-.+.-...+-.++++..++..+ ..+.+....
T Consensus 143 g~~~~~VGhPl~d~~~---~---~~---~~-~~---~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~- 208 (347)
T PRK14089 143 QSKATYVGHPLLDEIK---E---FK---KD-LD---KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF- 208 (347)
T ss_pred CCCCEEECCcHHHhhh---h---hh---hh-cC---CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-
Confidence 4568899966554321 0 01 01 22 236888888997653334455456666654322 223332221
Q ss_pred CCCCCCCCCchhHHHHhcC--CcEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeeecc--cCccccccc
Q 016062 303 DGLDPTDLLPDSFKETVEK--RGCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSA--FGDQKVNAS 376 (396)
Q Consensus 303 ~~~~~~~~lp~~~~~~~~~--~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~--~~DQ~~na~ 376 (396)
+ . +.++..... .+.+.+ .-.+++..+++ .|+-.|..|+ |+...|+|+|+ +. ..=|+.||+
T Consensus 209 -~------~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak 272 (347)
T PRK14089 209 -K------G-KDLKEIYGDISEFEISY--DTHKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAK 272 (347)
T ss_pred -c------H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHH
Confidence 0 1 223222221 222222 23568889888 9999999999 99999999999 33 335667776
No 92
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.85 E-value=0.0022 Score=61.73 Aligned_cols=274 Identities=11% Similarity=0.049 Sum_probs=138.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHch
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCR 88 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (396)
.||.+++.-..|++.- ..|.++|+++.=++.+..-.... .. . .|++. +- +-..-....+.+.+..+ ....
T Consensus 227 ~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG~~-M~-a-aG~e~--l~---d~~eLsVmG~~EVL~~l-~~l~ 296 (608)
T PRK01021 227 TSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGGPQ-MR-A-EGFHP--LF---NMEEFQVSGFWEVLLAL-FKLW 296 (608)
T ss_pred CeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEccHH-HH-h-CcCcc--cC---ChHHhhhhhHHHHHHHH-HHHH
Confidence 4788887777787764 45677788776666665542211 10 1 23321 00 00000112223333322 2334
Q ss_pred HHHHHHHHHHHhcCCCcCEEEe-CC--chhHHHHHHHHhCC--CeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccc
Q 016062 89 APLQEALTRMIAKQEDLPCVIH-DG--IMHCAEAVARHLKL--PSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLE 163 (396)
Q Consensus 89 ~~l~~~~~~l~~~~~~~D~vI~-D~--~~~~~~~~A~~lgi--P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (396)
+.++++.+.+.+. +||++|. |. ++....-.+++.|+ |.+.+.+-.. +
T Consensus 297 ~~~~~l~~~i~~~--kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqV------W-------------------- 348 (608)
T PRK01021 297 YRYRKLYKTILKT--NPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSI------W-------------------- 348 (608)
T ss_pred HHHHHHHHHHHhc--CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccc------e--------------------
Confidence 4445566666555 7999885 76 33445567788996 9888644311 0
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCCCC
Q 016062 164 LVPGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASSCS 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~ 243 (396)
-++ ..+.+.+.+. .|.++ +...+|.+.+. + .+.++.|||-...+..+
T Consensus 349 --------AWR------~~Rikki~k~---------vD~ll--~IfPFE~~~y~---~-~gv~v~yVGHPL~d~i~---- 395 (608)
T PRK01021 349 --------AWR------PKRKTILEKY---------LDLLL--LILPFEQNLFK---D-SPLRTVYLGHPLVETIS---- 395 (608)
T ss_pred --------eeC------cchHHHHHHH---------hhhhe--ecCccCHHHHH---h-cCCCeEEECCcHHhhcc----
Confidence 000 0111111111 12222 23345544332 2 35779999966655321
Q ss_pred ccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHH--hC--CCCeEEEECCCCCCCCCCCCCCchhHHHHh
Q 016062 244 LLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLA--NS--KQPFLWVLRPGSADGLDPTDLLPDSFKETV 319 (396)
Q Consensus 244 ~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~ 319 (396)
..+..++..+-+.-.+++++|-+--||-.+.=...+..+++|.+ .. +.++++...... ..+.+++..
T Consensus 396 ~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---------~~~~i~~~~ 466 (608)
T PRK01021 396 SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK---------YDHLILEVL 466 (608)
T ss_pred cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---------hHHHHHHHH
Confidence 11122122333332346788989899966533444455777776 33 345555432211 112233322
Q ss_pred c-CC---cEEEeecCccccccCccccceeeccchhhHHHHHHcCCceeee
Q 016062 320 E-KR---GCIVNWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICR 365 (396)
Q Consensus 320 ~-~~---~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~ 365 (396)
. .+ +.++.--...+++..+++ .+.-.|. .+.|+...|+|||++
T Consensus 467 ~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~ 513 (608)
T PRK01021 467 QQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVT 513 (608)
T ss_pred hhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEE
Confidence 1 11 122210012578888888 8877775 467999999999984
No 93
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0001 Score=55.29 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=56.5
Q ss_pred EEEEcCccccCCHHHHHH--HHHHHHhCCCCeEEEECCCCCCCCCCCCCCc-hhHHHHhcCCcEEEee--cCc-cccccC
Q 016062 264 IYVSFGSIALTGEKELAE--MAWGLANSKQPFLWVLRPGSADGLDPTDLLP-DSFKETVEKRGCIVNW--APQ-RQVLAH 337 (396)
Q Consensus 264 v~vs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp-~~~~~~~~~~~~~~~~--vp~-~~lL~~ 337 (396)
|||+-||....-...... +.+-.+....++|+.++.+. ..| .+. ++.+| -+- ..+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d--------~kpvagl--------~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD--------IKPVAGL--------RVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC--------ccccccc--------EEEeechHHHHHHHhhc
Confidence 789999985411111111 22222223457888887642 233 121 44444 443 457777
Q ss_pred ccccceeeccchhhHHHHHHcCCceeeecccC
Q 016062 338 SAVGGFWTHCGWNSILESISEGVPMICRSAFG 369 (396)
Q Consensus 338 ~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~ 369 (396)
+++ +|+|+|.||+..++..++|.+++|-..
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s 95 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSS 95 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECch
Confidence 777 999999999999999999999999743
No 94
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.74 E-value=0.0016 Score=61.24 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=49.2
Q ss_pred cCCcEEEeecCc-cccccCcccccee--ec--cch-hhHHHHHHcCCceeeecccCcccc----ccccCCCCcHHHHHHH
Q 016062 320 EKRGCIVNWAPQ-RQVLAHSAVGGFW--TH--CGW-NSILESISEGVPMICRSAFGDQKV----NASRKGGSSYNLLNEL 389 (396)
Q Consensus 320 ~~~~~~~~~vp~-~~lL~~~~~~~~I--tH--GG~-~s~~eal~~GvP~v~~P~~~DQ~~----na~~~~~~~~~~l~~~ 389 (396)
..++.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+... ++--.. .+..++.++
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~~~~~~g~lv~-~~~~~la~a 355 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGIDALPGAELLVA-ADPADFAAA 355 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccccccCCcceEeC-CCHHHHHHH
Confidence 367888999987 348888888 66 32 454 469999999999999886433221 111111 456777777
Q ss_pred HHHHhc
Q 016062 390 VDHIMS 395 (396)
Q Consensus 390 ~~~il~ 395 (396)
+.++++
T Consensus 356 i~~ll~ 361 (397)
T TIGR03087 356 ILALLA 361 (397)
T ss_pred HHHHHc
Confidence 777653
No 95
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.68 E-value=0.003 Score=57.92 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCeEEecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHh-----CCCCeEEEEC
Q 016062 224 PVPIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLAN-----SKQPFLWVLR 298 (396)
Q Consensus 224 ~~pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~ 298 (396)
+.++.|||--..+..+ . .....+..+.+ -..++++|.+--||-.+--...+..++++.++ .+.++++...
T Consensus 152 g~~~~~VGHPl~d~~~---~-~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a 226 (373)
T PF02684_consen 152 GVPVTYVGHPLLDEVK---P-EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVA 226 (373)
T ss_pred CCCeEEECCcchhhhc---c-CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 4679999966655332 1 11121223333 22567889999999665223333445566544 2445555543
Q ss_pred CCCCCCCCCCCCCchhHHH---HhcCCcEEEeec-CccccccCccccceeeccchhhHHHHHHcCCceeee
Q 016062 299 PGSADGLDPTDLLPDSFKE---TVEKRGCIVNWA-PQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICR 365 (396)
Q Consensus 299 ~~~~~~~~~~~~lp~~~~~---~~~~~~~~~~~v-p~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~ 365 (396)
... ..+-++. ..+.++.+.-.. .-.+++..+++ .+.-.|. .+.|+...|+|||++
T Consensus 227 ~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~ 285 (373)
T PF02684_consen 227 PEV---------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVA 285 (373)
T ss_pred CHH---------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEE
Confidence 321 1111111 122333333222 34668888887 6666664 578999999999985
No 96
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.61 E-value=0.051 Score=51.22 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=49.8
Q ss_pred cCCcEEEeecCccc---cccCccccceee--c-------cch-hhHHHHHHcCCceeeeccc--Cccccc---cccCCCC
Q 016062 320 EKRGCIVNWAPQRQ---VLAHSAVGGFWT--H-------CGW-NSILESISEGVPMICRSAF--GDQKVN---ASRKGGS 381 (396)
Q Consensus 320 ~~~~~~~~~vp~~~---lL~~~~~~~~It--H-------GG~-~s~~eal~~GvP~v~~P~~--~DQ~~n---a~~~~~~ 381 (396)
.+++.+.+|+|+.+ ++..+++ ||. . -|. ++++||+++|+|+|+-... .|.-.+ +---...
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv~~~ 355 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPEN 355 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEeCCC
Confidence 46788999999754 6788888 664 2 344 5789999999999996553 233322 2222234
Q ss_pred cHHHHHHHHHHHhc
Q 016062 382 SYNLLNELVDHIMS 395 (396)
Q Consensus 382 ~~~~l~~~~~~il~ 395 (396)
+..++.++|.++++
T Consensus 356 d~~~la~ai~~l~~ 369 (406)
T PRK15427 356 DAQALAQRLAAFSQ 369 (406)
T ss_pred CHHHHHHHHHHHHh
Confidence 56777777777653
No 97
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.60 E-value=0.0054 Score=58.03 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=47.5
Q ss_pred cCCcEEEeecCccc---cccCccccceeec----cchhhHHHHHHcCCceeeecccC---cccc------ccccCCCCcH
Q 016062 320 EKRGCIVNWAPQRQ---VLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAFG---DQKV------NASRKGGSSY 383 (396)
Q Consensus 320 ~~~~~~~~~vp~~~---lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~~---DQ~~------na~~~~~~~~ 383 (396)
.++|.+.+++|+.+ +|..+++ +|+- |=..++.||+++|+|+|+.-..+ |--. ++-.- .+.
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~--~d~ 379 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLA--STA 379 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEe--CCH
Confidence 56888999998754 7888887 6531 22348899999999999866533 2221 12121 266
Q ss_pred HHHHHHHHHHhc
Q 016062 384 NLLNELVDHIMS 395 (396)
Q Consensus 384 ~~l~~~~~~il~ 395 (396)
+++.+++.++++
T Consensus 380 ~~la~ai~~ll~ 391 (419)
T cd03806 380 EEYAEAIEKILS 391 (419)
T ss_pred HHHHHHHHHHHh
Confidence 777787777764
No 98
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.50 E-value=0.037 Score=51.55 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=46.0
Q ss_pred cCCcEEEeecCccc---cccCcccccee------eccch-hhHHHHHHcCCceeeeccc--CccccccccCCCCcHHHHH
Q 016062 320 EKRGCIVNWAPQRQ---VLAHSAVGGFW------THCGW-NSILESISEGVPMICRSAF--GDQKVNASRKGGSSYNLLN 387 (396)
Q Consensus 320 ~~~~~~~~~vp~~~---lL~~~~~~~~I------tHGG~-~s~~eal~~GvP~v~~P~~--~DQ~~na~~~~~~~~~~l~ 387 (396)
.+||.+.+++|+.+ .+.++++..+- +.++. +.+.|++++|+|+|..+.- .+.....--. ..+..++.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~~~~~~~~~-~~d~~~~~ 331 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVRRYEDEVVLI-ADDPEEFV 331 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHHhhcCcEEEe-CCCHHHHH
Confidence 37899999998655 67788873221 22333 4589999999999987652 1221111111 12567777
Q ss_pred HHHHHHh
Q 016062 388 ELVDHIM 394 (396)
Q Consensus 388 ~~~~~il 394 (396)
++|++++
T Consensus 332 ~ai~~~l 338 (373)
T cd04950 332 AAIEKAL 338 (373)
T ss_pred HHHHHHH
Confidence 7777654
No 99
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.50 E-value=0.068 Score=49.70 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=44.8
Q ss_pred CCcEEEeecCc-cccccCcccccee--ec--cchhhHHHHHHcCCceeeecccCc-----cccccccCCCCcHHHHHHHH
Q 016062 321 KRGCIVNWAPQ-RQVLAHSAVGGFW--TH--CGWNSILESISEGVPMICRSAFGD-----QKVNASRKGGSSYNLLNELV 390 (396)
Q Consensus 321 ~~~~~~~~vp~-~~lL~~~~~~~~I--tH--GG~~s~~eal~~GvP~v~~P~~~D-----Q~~na~~~~~~~~~~l~~~~ 390 (396)
.++++.++..+ ..+++.+++ +| ++ |-.+++.||+++|+|+|+-...+- ...++.--...+..++.+++
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i 332 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARAL 332 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHH
Confidence 45666665544 458889888 66 33 446799999999999999665321 11222222223456677777
Q ss_pred HHHh
Q 016062 391 DHIM 394 (396)
Q Consensus 391 ~~il 394 (396)
.+++
T Consensus 333 ~~l~ 336 (374)
T TIGR03088 333 QPYV 336 (374)
T ss_pred HHHH
Confidence 6654
No 100
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.44 E-value=0.027 Score=47.77 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=35.6
Q ss_pred cCCcEEEeecCc----cccccCccccceeeccc----hhhHHHHHHcCCceeeecccCc
Q 016062 320 EKRGCIVNWAPQ----RQVLAHSAVGGFWTHCG----WNSILESISEGVPMICRSAFGD 370 (396)
Q Consensus 320 ~~~~~~~~~vp~----~~lL~~~~~~~~ItHGG----~~s~~eal~~GvP~v~~P~~~D 370 (396)
..|+.+.+++++ ..+++.+++ +|+-.. .+++.||+++|+|+|+-...+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 467777877633 224444777 777776 7899999999999999777543
No 101
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.41 E-value=0.037 Score=53.37 Aligned_cols=120 Identities=12% Similarity=0.111 Sum_probs=62.8
Q ss_pred EEEEEcCccccCCHHHHHHHHHHHHh---CCCCeEEEECCCCCCCCCCCCCCchhHH---HHhcCCcEEEeecCcc---c
Q 016062 263 VIYVSFGSIALTGEKELAEMAWGLAN---SKQPFLWVLRPGSADGLDPTDLLPDSFK---ETVEKRGCIVNWAPQR---Q 333 (396)
Q Consensus 263 vv~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~~---~~~~~~~~~~~~vp~~---~ 333 (396)
.+++..|.... .+-+..+++++++ .+.++++. +.+. . ...+.+. .+.++|+.+....++. .
T Consensus 297 ~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~-G~g~--~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 297 PLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVIL-GSGD--P-----EYEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEEE-ecCC--H-----HHHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 45556677653 3344455555544 34454444 3221 0 0112222 2235677765434432 3
Q ss_pred cccCccccceeec---cch-hhHHHHHHcCCceeeecccC--cccc---------ccccCCCCcHHHHHHHHHHHh
Q 016062 334 VLAHSAVGGFWTH---CGW-NSILESISEGVPMICRSAFG--DQKV---------NASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 334 lL~~~~~~~~ItH---GG~-~s~~eal~~GvP~v~~P~~~--DQ~~---------na~~~~~~~~~~l~~~~~~il 394 (396)
+++.+++ ++.- -|. .+.+||+++|+|+|+-...+ |.-. |+-.-...+..+|.+++.+++
T Consensus 367 ~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l 440 (476)
T cd03791 367 IYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRAL 440 (476)
T ss_pred HHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHH
Confidence 6778887 6642 222 47899999999999765432 2221 233223345677777777665
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.37 E-value=0.14 Score=51.26 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=36.2
Q ss_pred cCCcEEEeecCc-cccccCccccceee---ccc-hhhHHHHHHcCCceeeecc
Q 016062 320 EKRGCIVNWAPQ-RQVLAHSAVGGFWT---HCG-WNSILESISEGVPMICRSA 367 (396)
Q Consensus 320 ~~~~~~~~~vp~-~~lL~~~~~~~~It---HGG-~~s~~eal~~GvP~v~~P~ 367 (396)
.++|.+.+|.++ ..+|+.+++ ||. +.| -+++.||+++|+|+|+...
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~ 623 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA 623 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC
Confidence 477888888876 448888888 664 455 5689999999999999765
No 103
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.36 E-value=0.022 Score=52.99 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=33.2
Q ss_pred cCCcEEEeec--Cc---cccccCccccceeec----cchhhHHHHHHcCCceeeecc
Q 016062 320 EKRGCIVNWA--PQ---RQVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSA 367 (396)
Q Consensus 320 ~~~~~~~~~v--p~---~~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~ 367 (396)
.+++.+..+. ++ ..+++.+++ |+.- |-..++.||+++|+|+|+-..
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~ 305 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPV 305 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCC
Confidence 3567777776 33 247788888 7743 224599999999999999655
No 104
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.36 E-value=0.00022 Score=51.57 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=47.2
Q ss_pred hhhhhccCCCCeEEEEEcCccccC---C--HHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchh
Q 016062 251 CIEWLDKQTQHSVIYVSFGSIALT---G--EKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDS 314 (396)
Q Consensus 251 l~~~l~~~~~~~vv~vs~Gs~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~ 314 (396)
+.+|+...+.++.|++|+||.... . ...+..+++|++.+|.++|+++....... +..+|+|
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~---lg~lP~n 95 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAE---LGELPDN 95 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGG---CCS-TTT
T ss_pred CCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHh---hCCCCCC
Confidence 678998888999999999998773 2 25888999999999999999998754222 3445554
No 105
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.30 E-value=0.21 Score=49.30 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=65.2
Q ss_pred eEEEEEcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchhHHHHhc---CCcEEEeecCcc-
Q 016062 262 SVIYVSFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDSFKETVE---KRGCIVNWAPQR- 332 (396)
Q Consensus 262 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~---~~~~~~~~vp~~- 332 (396)
.++|+ |-. ...+-+..+++|++.+ +.+ ++.++.+. .-+.++...+ -++.+.++.++.
T Consensus 548 giLfV--GRL--a~EKGld~LLeAla~L~~~~pnvr-LvIVGDGP---------~reeLe~la~eLgL~V~FLG~~dd~~ 613 (794)
T PLN02501 548 GAYFL--GKM--VWAKGYRELIDLLAKHKNELDGFN-LDVFGNGE---------DAHEVQRAAKRLDLNLNFLKGRDHAD 613 (794)
T ss_pred ceEEE--Ecc--cccCCHHHHHHHHHHHHhhCCCeE-EEEEcCCc---------cHHHHHHHHHHcCCEEEecCCCCCHH
Confidence 35554 433 2455666677777542 233 33444432 1123333222 235555666654
Q ss_pred ccccCccccceee----ccchhhHHHHHHcCCceeeecccCcc----ccccccCCCCcHHHHHHHHHHHhc
Q 016062 333 QVLAHSAVGGFWT----HCGWNSILESISEGVPMICRSAFGDQ----KVNASRKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 333 ~lL~~~~~~~~It----HGG~~s~~eal~~GvP~v~~P~~~DQ----~~na~~~~~~~~~~l~~~~~~il~ 395 (396)
++++.+++ ||. =|=.+++.||+++|+|+|+.-.-+.. ..|+..- .+.+++.+++.++|+
T Consensus 614 ~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~V~~g~nGll~--~D~EafAeAI~~LLs 680 (794)
T PLN02501 614 DSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTY--KTSEDFVAKVKEALA 680 (794)
T ss_pred HHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCceEeecCCeEec--CCHHHHHHHHHHHHh
Confidence 48888887 765 23356899999999999997664432 2233211 245667777766653
No 106
>PLN02949 transferase, transferring glycosyl groups
Probab=97.27 E-value=0.13 Score=49.24 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=47.7
Q ss_pred cCCcEEEeecCccc---cccCccccceee---ccchh-hHHHHHHcCCceeeecccC---cccc------ccccCCCCcH
Q 016062 320 EKRGCIVNWAPQRQ---VLAHSAVGGFWT---HCGWN-SILESISEGVPMICRSAFG---DQKV------NASRKGGSSY 383 (396)
Q Consensus 320 ~~~~~~~~~vp~~~---lL~~~~~~~~It---HGG~~-s~~eal~~GvP~v~~P~~~---DQ~~------na~~~~~~~~ 383 (396)
.++|.+..++|+.+ +|+.+++ +|+ +-|.| ++.||+++|+|+|+....+ |.-. ++-.. .+.
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~--~~~ 409 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLA--TTV 409 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccC--CCH
Confidence 57888899998654 6778877 662 33444 7999999999999986543 2211 11111 156
Q ss_pred HHHHHHHHHHhc
Q 016062 384 NLLNELVDHIMS 395 (396)
Q Consensus 384 ~~l~~~~~~il~ 395 (396)
+++.+++.++++
T Consensus 410 ~~la~ai~~ll~ 421 (463)
T PLN02949 410 EEYADAILEVLR 421 (463)
T ss_pred HHHHHHHHHHHh
Confidence 777777777653
No 107
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.057 Score=49.00 Aligned_cols=312 Identities=15% Similarity=0.132 Sum_probs=158.5
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCC-CeEEEEeCCCCCC-CCCCCCCceEEeCC-CCCCCCC-CCCCCHHHHHHHHHHHc
Q 016062 12 VLVPIPLQGHITPMLQLGTILHSRG-FSITVAHAQFNSP-HASNHPDFTFLPLS-DGSSSTP-KASDDFIDFMSNINLNC 87 (396)
Q Consensus 12 l~~~~~~~GH~~p~l~la~~L~~rG-H~Vt~~~~~~~~~-~~~~~~gi~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 87 (396)
+++-++++=.+.=+..+.+++.+.+ .+..++.+.-... .... ..+....+. .++.... .....+.+.... +
T Consensus 6 v~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~-~~le~~~i~~pdy~L~i~~~~~tl~~~t~~----~ 80 (383)
T COG0381 6 VLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLD-QVLELFGIRKPDYDLNIMKPGQTLGEITGN----I 80 (383)
T ss_pred EEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHH-HHHHHhCCCCCCcchhccccCCCHHHHHHH----H
Confidence 4445677788999999999999997 7766666632221 2111 111111122 1111111 122333332222 2
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCC--ch-hHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCccccc
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDG--IM-HCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLEL 164 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 164 (396)
-..+.+++++. +||+|++.. .. .++..+|-+++||...+-.+.-.. ...+|..
T Consensus 81 i~~~~~vl~~~-----kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~---~~~~PEE---------------- 136 (383)
T COG0381 81 IEGLSKVLEEE-----KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTG---DLYFPEE---------------- 136 (383)
T ss_pred HHHHHHHHHhh-----CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccC---CCCCcHH----------------
Confidence 23334444444 899999754 22 556889999999999986652110 0000100
Q ss_pred CCCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCC-CeEEecccccCCCCCCCC
Q 016062 165 VPGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPV-PIFSIGPMHLAAPASSCS 243 (396)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~-pv~~vGp~~~~~~~~~~~ 243 (396)
..+...+ .-++..+.++--. .-+-.+...++ .++.+|-...+.-..-..
T Consensus 137 ----------------------~NR~l~~----~~S~~hfapte~a----r~nLl~EG~~~~~IfvtGnt~iDal~~~~~ 186 (383)
T COG0381 137 ----------------------INRRLTS----HLSDLHFAPTEIA----RKNLLREGVPEKRIFVTGNTVIDALLNTRD 186 (383)
T ss_pred ----------------------HHHHHHH----HhhhhhcCChHHH----HHHHHHcCCCccceEEeCChHHHHHHHHHh
Confidence 0000000 0011111111110 00111222222 266666544332110000
Q ss_pred ccccCchhhhh-hccCCCCeEEEEEcCccccCCHHHHHHHHHHHHh----C-CCCeEEEECCCCCCCCCCCCCCchhHHH
Q 016062 244 LLKEDTSCIEW-LDKQTQHSVIYVSFGSIALTGEKELAEMAWGLAN----S-KQPFLWVLRPGSADGLDPTDLLPDSFKE 317 (396)
Q Consensus 244 ~~~~~~~l~~~-l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~----~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~ 317 (396)
....+...... +.. .++..|++|+=-..+.. +-++.+++|+.+ . +..+|..+... .. +-+-...
T Consensus 187 ~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~--~~------v~e~~~~ 256 (383)
T COG0381 187 RVLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR--PR------VRELVLK 256 (383)
T ss_pred hhccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC--hh------hhHHHHH
Confidence 11112112211 232 45678888864444433 445555655544 4 45555555443 11 1122223
Q ss_pred HhcC--CcEEE---eecCccccccCccccceeeccchhhHHHHHHcCCceeeecccCccccccc----cCCCCcHHHHHH
Q 016062 318 TVEK--RGCIV---NWAPQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNAS----RKGGSSYNLLNE 388 (396)
Q Consensus 318 ~~~~--~~~~~---~~vp~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na~----~~~~~~~~~l~~ 388 (396)
++.+ |+.+. +|.+...++.++-+ ++|..|. -.-||-..|+|++++=...||+.--. ..-|.+..++.+
T Consensus 257 ~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE~v~agt~~lvg~~~~~i~~ 333 (383)
T COG0381 257 RLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPEGVEAGTNILVGTDEENILD 333 (383)
T ss_pred HhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCccceecCceEEeCccHHHHHH
Confidence 4443 47775 66777889999877 9998874 46799999999999999999997333 444455667777
Q ss_pred HHHHHhc
Q 016062 389 LVDHIMS 395 (396)
Q Consensus 389 ~~~~il~ 395 (396)
++..+++
T Consensus 334 ~~~~ll~ 340 (383)
T COG0381 334 AATELLE 340 (383)
T ss_pred HHHHHhh
Confidence 7766664
No 108
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.15 E-value=0.0067 Score=47.51 Aligned_cols=104 Identities=11% Similarity=0.130 Sum_probs=65.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRA 89 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (396)
||++++.....| ...++++|.++||+|++++............++++..++... ......+. . .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~-------k~~~~~~~-~----~- 64 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPR-------KSPLNYIK-Y----F- 64 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCC-------CccHHHHH-H----H-
Confidence 467776655555 568899999999999999995554344334788888885221 11222221 1 1
Q ss_pred HHHHHHHHHHhcCCCcCEEEeCCchh---HHHHHHHHhC-CCeEEEeCc
Q 016062 90 PLQEALTRMIAKQEDLPCVIHDGIMH---CAEAVARHLK-LPSIILYTL 134 (396)
Q Consensus 90 ~l~~~~~~l~~~~~~~D~vI~D~~~~---~~~~~A~~lg-iP~v~~~~~ 134 (396)
.+...+++. +||+|.+..... .+..++...+ +|.+...++
T Consensus 65 ~l~k~ik~~-----~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 65 RLRKIIKKE-----KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred HHHHHhccC-----CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 222333333 799998877543 2345667888 888876654
No 109
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.07 E-value=0.0013 Score=61.73 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=60.3
Q ss_pred CCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHh------cCCcEEEeecCcc
Q 016062 259 TQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETV------EKRGCIVNWAPQR 332 (396)
Q Consensus 259 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~------~~~~~~~~~vp~~ 332 (396)
+++.++|.||....+..++.++.-.+-|++.+.-.+|...... . -.+++.++. ++++.+..+.++.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~-~-------~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA-S-------GEARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST-T-------HHHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH-H-------HHHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 3567999999999999999999999999998888888875432 1 113333322 4677777776654
Q ss_pred c---cccCcccccee---eccchhhHHHHHHcCCceeeecc
Q 016062 333 Q---VLAHSAVGGFW---THCGWNSILESISEGVPMICRSA 367 (396)
Q Consensus 333 ~---lL~~~~~~~~I---tHGG~~s~~eal~~GvP~v~~P~ 367 (396)
+ .+...|+ ++ ..+|.+|++|||+.|||+|.+|-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 4 3344555 43 56889999999999999999985
No 110
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.89 E-value=0.17 Score=44.35 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCCCCCCCCHH-HHHHHHHHHchHHHHHHHHH
Q 016062 20 GHITPMLQLGTILHSRGFSITVAHAQFNS-PHASNHPDFTFLPLSDGSSSTPKASDDFI-DFMSNINLNCRAPLQEALTR 97 (396)
Q Consensus 20 GH~~p~l~la~~L~~rGH~Vt~~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 97 (396)
-|+.-+..|.++|.++||+|.+.+-+... ......-|+.+..+.+.- ...+. +......+ .. .+.+
T Consensus 11 ~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g------~~tl~~Kl~~~~eR--~~----~L~k 78 (346)
T COG1817 11 PHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHG------GVTLKEKLLESAER--VY----KLSK 78 (346)
T ss_pred chhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccC------CccHHHHHHHHHHH--HH----HHHH
Confidence 48889999999999999998877764322 111233578777776431 12222 22222211 11 2333
Q ss_pred HHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCch
Q 016062 98 MIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 98 l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 135 (396)
+.... +||+.|. -.++.+..+|--+|+|.+.+.-..
T Consensus 79 i~~~~-kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 79 IIAEF-KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHhhc-CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 33333 8999999 567889999999999999987653
No 111
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.78 E-value=0.39 Score=45.25 Aligned_cols=87 Identities=11% Similarity=-0.025 Sum_probs=49.5
Q ss_pred EEcCccccCCHHHHHHHHHHHHhCCCCe-EEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCc----cccccCccc
Q 016062 266 VSFGSIALTGEKELAEMAWGLANSKQPF-LWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQ----RQVLAHSAV 340 (396)
Q Consensus 266 vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~----~~lL~~~~~ 340 (396)
+..|.....+.+.+..+++|+.+++..+ ++.++.+. .. . ..++....+... .++++.+++
T Consensus 245 l~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~-~~------~--------~~~v~~~g~~~~~~~l~~~y~~aDv 309 (405)
T PRK10125 245 AVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS-PF------T--------AGNVVNHGFETDKRKLMSALNQMDA 309 (405)
T ss_pred EEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC-cc------c--------ccceEEecCcCCHHHHHHHHHhCCE
Confidence 3344422223344577889998865443 34444321 00 1 123344455432 335556676
Q ss_pred cceee----ccchhhHHHHHHcCCceeeecccC
Q 016062 341 GGFWT----HCGWNSILESISEGVPMICRSAFG 369 (396)
Q Consensus 341 ~~~It----HGG~~s~~eal~~GvP~v~~P~~~ 369 (396)
||. =|--+++.||+++|+|+|+....+
T Consensus 310 --fV~pS~~Egfp~vilEAmA~G~PVVat~~gG 340 (405)
T PRK10125 310 --LVFSSRVDNYPLILCEALSIGVPVIATHSDA 340 (405)
T ss_pred --EEECCccccCcCHHHHHHHcCCCEEEeCCCC
Confidence 664 344568999999999999987744
No 112
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.74 E-value=0.28 Score=45.10 Aligned_cols=274 Identities=12% Similarity=0.099 Sum_probs=141.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeC-CCCCCCCCCC--CCceEEeCCCCCCCCCCCCCCHHHHHHHHHH
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHA-QFNSPHASNH--PDFTFLPLSDGSSSTPKASDDFIDFMSNINL 85 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~-~~~~~~~~~~--~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
.+.+=.-+-|-++-...|.++|.++ ++.+++-+. +...+..... ..+....+|-+. ....
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~----------~~~v----- 115 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDL----------PIAV----- 115 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCc----------hHHH-----
Confidence 3333344669999999999999999 888887763 3332222111 123444444221 1112
Q ss_pred HchHHHHHHHHHHHhcCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccc
Q 016062 86 NCRAPLQEALTRMIAKQEDLPCVIHDGIM--HCAEAVARHLKLPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLE 163 (396)
Q Consensus 86 ~~~~~l~~~~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (396)
+..++.+ +||++|.=... +....-+++.|+|.+.+..=.. ..++
T Consensus 116 ------~rFl~~~-----~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS-------------~rS~---------- 161 (419)
T COG1519 116 ------RRFLRKW-----RPKLLIIMETELWPNLINELKRRGIPLVLVNARLS-------------DRSF---------- 161 (419)
T ss_pred ------HHHHHhc-----CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec-------------hhhh----------
Confidence 2455666 79987755443 4456788899999999733210 0000
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCchHHHHHH--hhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCC
Q 016062 164 LVPGLDPLRFKDLPASSFGNLSTLLPFTAI--LRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASS 241 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~ 241 (396)
. .++.+.. .....+.+.++.++-.+-+ .+..-..+++...|-+-......
T Consensus 162 ---------------------~-~y~k~~~~~~~~~~~i~li~aQse~D~~-----Rf~~LGa~~v~v~GNlKfd~~~~- 213 (419)
T COG1519 162 ---------------------A-RYAKLKFLARLLFKNIDLILAQSEEDAQ-----RFRSLGAKPVVVTGNLKFDIEPP- 213 (419)
T ss_pred ---------------------H-HHHHHHHHHHHHHHhcceeeecCHHHHH-----HHHhcCCcceEEecceeecCCCC-
Confidence 0 0011111 1223456777777654332 22222224588888888765430
Q ss_pred CCccccC-chhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhC--CCCeEEEECCCCCCCCCCCCCCchhHHHH
Q 016062 242 CSLLKED-TSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANS--KQPFLWVLRPGSADGLDPTDLLPDSFKET 318 (396)
Q Consensus 242 ~~~~~~~-~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~ 318 (396)
+.++.. ..+.+.++. .++ +.|..+|... ..+.+....+++.+. +...||+=.... .. +.+++-
T Consensus 214 -~~~~~~~~~~r~~l~~--~r~-v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHpE--------Rf-~~v~~l 279 (419)
T COG1519 214 -PQLAAELAALRRQLGG--HRP-VWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHPE--------RF-KAVENL 279 (419)
T ss_pred -hhhHHHHHHHHHhcCC--CCc-eEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCChh--------hH-HHHHHH
Confidence 111111 112333332 134 5556667544 455556666666553 344555522210 01 111211
Q ss_pred hcC------------------CcEEEeecCc-cccccCccc---c-ceeeccchhhHHHHHHcCCceeeecccCcccccc
Q 016062 319 VEK------------------RGCIVNWAPQ-RQVLAHSAV---G-GFWTHCGWNSILESISEGVPMICRSAFGDQKVNA 375 (396)
Q Consensus 319 ~~~------------------~~~~~~~vp~-~~lL~~~~~---~-~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na 375 (396)
+.. +|.+.|-+-- ..++.-+++ + -++.+||+| ..|++++|+|++.=|...-|.+-+
T Consensus 280 ~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~ 358 (419)
T COG1519 280 LKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIA 358 (419)
T ss_pred HHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHH
Confidence 221 2233322211 111111111 1 156699998 689999999999999999888888
Q ss_pred c
Q 016062 376 S 376 (396)
Q Consensus 376 ~ 376 (396)
+
T Consensus 359 ~ 359 (419)
T COG1519 359 E 359 (419)
T ss_pred H
Confidence 7
No 113
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.68 E-value=0.055 Score=48.99 Aligned_cols=274 Identities=12% Similarity=0.084 Sum_probs=132.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHch
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCR 88 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (396)
+||++++.-..|++.- ..|.++|++|==+|.|+.-.... ... .|++. +- +...-....+.+.+..+ ....
T Consensus 2 ~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvgG~~-m~a--eG~~s--l~---~~~elsvmGf~EVL~~l-p~ll 71 (381)
T COG0763 2 LKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVGGEK-MEA--EGLES--LF---DMEELSVMGFVEVLGRL-PRLL 71 (381)
T ss_pred ceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEeccHH-HHh--ccCcc--cc---CHHHHHHhhHHHHHHHH-HHHH
Confidence 4789999888888764 46778888872266666553211 110 22111 00 00000011222222211 1112
Q ss_pred HHHHHHHHHHHhcCCCcCEEE-eCCc--hhHHHHHHHHhC--CCeEEEeCchHHHHHHHhhhhhhhhcCCCCCCCCcccc
Q 016062 89 APLQEALTRMIAKQEDLPCVI-HDGI--MHCAEAVARHLK--LPSIILYTLNPTNLLTYYAYPRLLEQGHIPFPDSKLLE 163 (396)
Q Consensus 89 ~~l~~~~~~l~~~~~~~D~vI-~D~~--~~~~~~~A~~lg--iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (396)
...+++++.+... +||++| .|+- +.-...-.++.| +|.|.+.+-.. +
T Consensus 72 k~~~~~~~~i~~~--kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsV------W-------------------- 123 (381)
T COG0763 72 KIRRELVRYILAN--KPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSV------W-------------------- 123 (381)
T ss_pred HHHHHHHHHHHhc--CCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcce------e--------------------
Confidence 2333466666555 899888 5652 333444557778 99998643211 0
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCchHHHHHHhhhcCCccEEEEccccccchhHHHHHHhhCCCCeEEecccccCCCCCCCC
Q 016062 164 LVPGLDPLRFKDLPASSFGNLSTLLPFTAILRDIGSSSAIILNTNECLEQSSIVQFQEQYPVPIFSIGPMHLAAPASSCS 243 (396)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~pv~~vGp~~~~~~~~~~~ 243 (396)
-|+. .+ ...+ ...+|.++. ..-+|+..++. ++.+..|||--..+..+
T Consensus 124 --------AWr~------~R---a~~i------~~~~D~lLa--ilPFE~~~y~k----~g~~~~yVGHpl~d~i~---- 170 (381)
T COG0763 124 --------AWRP------KR---AVKI------AKYVDHLLA--ILPFEPAFYDK----FGLPCTYVGHPLADEIP---- 170 (381)
T ss_pred --------eech------hh---HHHH------HHHhhHeee--ecCCCHHHHHh----cCCCeEEeCChhhhhcc----
Confidence 0000 00 0000 011232222 33455543332 34569999966655331
Q ss_pred ccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHh-----CCCCeEEEECCCCCCCCCCCCCCchhHHHH
Q 016062 244 LLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLAN-----SKQPFLWVLRPGSADGLDPTDLLPDSFKET 318 (396)
Q Consensus 244 ~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~ 318 (396)
..+....+.+-+....+++++.+--||-.+.-......+.++.++ .+.++++-+..... +.+-+. .
T Consensus 171 ~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~------~~~~~~---~ 241 (381)
T COG0763 171 LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY------RRIIEE---A 241 (381)
T ss_pred ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH------HHHHHH---H
Confidence 122222244445444677889999999766222223334444433 35677666543210 001111 1
Q ss_pred hcCCc-EEEeec-Cc--cccccCccccceeeccchhhHHHHHHcCCceeee
Q 016062 319 VEKRG-CIVNWA-PQ--RQVLAHSAVGGFWTHCGWNSILESISEGVPMICR 365 (396)
Q Consensus 319 ~~~~~-~~~~~v-p~--~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~ 365 (396)
+..+. ...-++ ++ ...+..+|+ .+.-.|.. +.|+.-+|+|||+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~ 289 (381)
T COG0763 242 LKWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVA 289 (381)
T ss_pred hhccccCceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEE
Confidence 22222 122232 22 336766776 66666654 67999999999984
No 114
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.62 E-value=0.0075 Score=46.91 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=45.3
Q ss_pred cCCcEEEeecCc-cccccCccccceee--ccc-hhhHHHHHHcCCceeeecccC----ccccccccCCCCcHHHHHHHHH
Q 016062 320 EKRGCIVNWAPQ-RQVLAHSAVGGFWT--HCG-WNSILESISEGVPMICRSAFG----DQKVNASRKGGSSYNLLNELVD 391 (396)
Q Consensus 320 ~~~~~~~~~vp~-~~lL~~~~~~~~It--HGG-~~s~~eal~~GvP~v~~P~~~----DQ~~na~~~~~~~~~~l~~~~~ 391 (396)
.+|+.+.+|++. .+++..+++....+ +.| .+++.|++++|+|+|+.+... ++...+.-. ..+.+++.+++.
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~i~ 130 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLV-ANDPEELAEAIE 130 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE--TT-HHHHHHHHH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEE-CCCHHHHHHHHH
Confidence 469999999975 44888888855544 223 489999999999999988822 222222222 557888888888
Q ss_pred HHhc
Q 016062 392 HIMS 395 (396)
Q Consensus 392 ~il~ 395 (396)
++++
T Consensus 131 ~l~~ 134 (135)
T PF13692_consen 131 RLLN 134 (135)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8763
No 115
>PLN02316 synthase/transferase
Probab=96.56 E-value=0.37 Score=50.18 Aligned_cols=40 Identities=10% Similarity=0.254 Sum_probs=29.9
Q ss_pred CcEEEEEcC---C-C-CCC-HHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPI---P-L-QGH-ITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~---~-~-~GH-~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
++||++++. | + .|- -.-.-+|+++|+++||+|.++++...
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 589998872 2 1 233 33468999999999999999999543
No 116
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.56 E-value=0.066 Score=48.13 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=32.4
Q ss_pred CccccccCccccceeeccchhhHHHHHHcCCceeeecccC
Q 016062 330 PQRQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFG 369 (396)
Q Consensus 330 p~~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~ 369 (396)
|+..+|+.++. .+||---.+-+.||+..|+|+.+++.-.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 56778888886 4666666888999999999999999875
No 117
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.48 E-value=0.27 Score=45.65 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=49.3
Q ss_pred cCCcEEEeecCcc-ccccCccccceeec--cchhhHHHHHHcCCceeeeccc---Ccc---ccccccCCCCcHHHHHHHH
Q 016062 320 EKRGCIVNWAPQR-QVLAHSAVGGFWTH--CGWNSILESISEGVPMICRSAF---GDQ---KVNASRKGGSSYNLLNELV 390 (396)
Q Consensus 320 ~~~~~~~~~vp~~-~lL~~~~~~~~ItH--GG~~s~~eal~~GvP~v~~P~~---~DQ---~~na~~~~~~~~~~l~~~~ 390 (396)
+.++.+.++.++. .++..+++-.+.++ |...++.||+++|+|+|+.... .|. ..|+.-....+..++.++|
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i 339 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAI 339 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHH
Confidence 4677777777664 48889888555554 3456899999999999986432 122 1233322334567777777
Q ss_pred HHHhc
Q 016062 391 DHIMS 395 (396)
Q Consensus 391 ~~il~ 395 (396)
.++++
T Consensus 340 ~~ll~ 344 (372)
T cd04949 340 IELLN 344 (372)
T ss_pred HHHHc
Confidence 77653
No 118
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.34 E-value=0.065 Score=43.28 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=56.6
Q ss_pred hCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCC---CCCCCHHHHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEe
Q 016062 34 SRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTP---KASDDFIDFMSNINLNCRAPLQEALTRMIAKQEDLPCVIH 110 (396)
Q Consensus 34 ~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~ 110 (396)
++||+|++++........ +|++.+.+...-.... ....++...+. .. ..+...+.+|++.+=.||+||.
T Consensus 1 q~gh~v~fl~~~~~~~~~---~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~----rg-~av~~a~~~L~~~Gf~PDvI~~ 72 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP---PGVRVVRYRPPRGPTPGTHPYVRDFEAAVL----RG-QAVARAARQLRAQGFVPDVIIA 72 (171)
T ss_pred CCCCEEEEEecCCCCCCC---CCcEEEEeCCCCCCCCCCCcccccHHHHHH----HH-HHHHHHHHHHHHcCCCCCEEEE
Confidence 479999999964433332 5898888874211111 12222222211 11 2222344556555337999999
Q ss_pred CCchhHHHHHHHHh-CCCeEEEeC
Q 016062 111 DGIMHCAEAVARHL-KLPSIILYT 133 (396)
Q Consensus 111 D~~~~~~~~~A~~l-giP~v~~~~ 133 (396)
.+..-.++.+-+.+ ++|.+.+.-
T Consensus 73 H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 73 HPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred cCCcchhhhHHHhCCCCcEEEEEE
Confidence 99877788899999 999998743
No 119
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.20 E-value=0.18 Score=48.76 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=56.0
Q ss_pred EEEEEcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchhHHHH-----hcCCcEEEeecCcc
Q 016062 263 VIYVSFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDSFKET-----VEKRGCIVNWAPQR 332 (396)
Q Consensus 263 vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~~~~~vp~~ 332 (396)
.++++.|... +.+.+..+++|+.+. +.+ ++.+|.+. ..+.+++. +.++|.+.++.+..
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~-l~i~G~G~---------~~~~l~~~i~~~~l~~~V~f~G~~~~~ 387 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELT-FDIYGEGG---------EKQKLQKIINENQAQDYIHLKGHRNLS 387 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeE-EEEEECch---------hHHHHHHHHHHcCCCCeEEEcCCCCHH
Confidence 3555667764 345555666666542 223 23344432 11223222 23567777888777
Q ss_pred ccccCccccceee---ccc-hhhHHHHHHcCCceeeecc
Q 016062 333 QVLAHSAVGGFWT---HCG-WNSILESISEGVPMICRSA 367 (396)
Q Consensus 333 ~lL~~~~~~~~It---HGG-~~s~~eal~~GvP~v~~P~ 367 (396)
++++.+++ +|. .-| ..++.||+++|+|+|+.-.
T Consensus 388 ~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv 424 (500)
T TIGR02918 388 EVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDV 424 (500)
T ss_pred HHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecC
Confidence 89988888 664 334 4589999999999999654
No 120
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.15 E-value=0.39 Score=43.56 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce-EEeCCCCCCCCCCCCCCHHHHHHHHHHH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHAQFNSPHASNHPDFT-FLPLSDGSSSTPKASDDFIDFMSNINLN 86 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
||+++-....|++.-+..+.++|+++ +.+|++++.+.+.......+.++ ++.++..-.. ..+ .. ..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~~~~~~-----~~~---~~---~~ 69 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVALRRWR-----KTL---FS---AA 69 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEechhhhh-----hcc---cc---ch
Confidence 58889999999999999999999998 99999999977766666556674 4455421000 000 00 00
Q ss_pred chHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEE
Q 016062 87 CRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIIL 131 (396)
Q Consensus 87 ~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (396)
....+..+.+.+... ++|++|.-........++..++.+.+.+
T Consensus 70 ~~~~~~~~~~~lr~~--~yD~vi~~~~~~~s~~l~~~~~~~r~g~ 112 (319)
T TIGR02193 70 TWREIKALRALLRAE--RYDAVIDAQGLIKSALVARMARGPRHGF 112 (319)
T ss_pred hHHHHHHHHHHHhhc--cchhhhhhhhhHHHHHHHHhhCCceecC
Confidence 011222333444433 7999885433344556666666444443
No 121
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.05 E-value=0.014 Score=46.45 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHHHHhcC
Q 016062 24 PMLQLGTILHSRGFSITVAHAQFNSPHA-SNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRAPLQEALTRMIAKQ 102 (396)
Q Consensus 24 p~l~la~~L~~rGH~Vt~~~~~~~~~~~-~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 102 (396)
-+..|+++|.++||+|+++++....... ....++++..++-..... ........ ..+..++ . ....
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~l-~-~~~~ 72 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPW---PLRLLRFL--------RRLRRLL-A-ARRE 72 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSS---GGGHCCHH--------HHHHHHC-H-HCT-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccch---hhhhHHHH--------HHHHHHH-h-hhcc
Confidence 4678999999999999999985443321 122577777776221110 00011111 1112222 1 1222
Q ss_pred CCcCEEEeCCch-hHHHHHHH-HhCCCeEEEeCc
Q 016062 103 EDLPCVIHDGIM-HCAEAVAR-HLKLPSIILYTL 134 (396)
Q Consensus 103 ~~~D~vI~D~~~-~~~~~~A~-~lgiP~v~~~~~ 134 (396)
+||+|.+.... .....+++ ..++|+|.....
T Consensus 73 -~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 73 -RPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp ---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred -CCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 89999988743 22334444 889999997664
No 122
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.76 E-value=1.1 Score=39.71 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=64.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCCCCCCCCHHHHHHHHHHH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRG--FSITVAHAQFNSPHASNHPDFTF-LPLSDGSSSTPKASDDFIDFMSNINLN 86 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rG--H~Vt~~~~~~~~~~~~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
||+++-..+.|++.-+..+.++|+++. -+|++++.+.........+.++- +.++... ....+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~-----~~~~~---------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLGL---------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc-----cccch----------
Confidence 588999999999999999999999984 89999999766555554455543 2232110 00111
Q ss_pred chHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEE
Q 016062 87 CRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSII 130 (396)
Q Consensus 87 ~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 130 (396)
..+..++.++... ++|+++.=........++...+++...
T Consensus 66 --~~~~~~~~~l~~~--~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 --GARRRLARALRRR--RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --HHHHHHHHHHhhc--CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 1122444555544 799998765554444455666665543
No 123
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.64 E-value=0.75 Score=42.26 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCCCCCCCCHHHHHHHHHHH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHAQFNSPHASNHPDFTF-LPLSDGSSSTPKASDDFIDFMSNINLN 86 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
||+++-..+.|++.-+..+.++|+++ +.+|++++.+.+.......+.++- +.++.... ......+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~-----~~~~~~~~------ 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA-----KAGERKLA------ 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh-----cchHHHHH------
Confidence 58899999999999999999999997 899999999777666655566643 34432110 00000110
Q ss_pred chHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEE
Q 016062 87 CRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSII 130 (396)
Q Consensus 87 ~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 130 (396)
.+..++..+... ++|++|.=........++...|+|.-+
T Consensus 70 ---~~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 ---NQFHLIKVLRAN--RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---HHHHHHHHHHhC--CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 111344555444 799999654445567888888999655
No 124
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.63 E-value=0.78 Score=44.27 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=46.5
Q ss_pred cCCcEEEeecCccccccCccccceeec----cchhhHHHHHHcCCceeeecccC--cccc---------ccccCCCCcHH
Q 016062 320 EKRGCIVNWAPQRQVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAFG--DQKV---------NASRKGGSSYN 384 (396)
Q Consensus 320 ~~~~~~~~~vp~~~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~~--DQ~~---------na~~~~~~~~~ 384 (396)
.+||.+.+...-.++++.+++ +|.- |--+++.||+++|+|+|+-...+ |-.. ++.-....+..
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~ 430 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVVPPADPE 430 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEECCCCHH
Confidence 467788775445668888887 5533 44568999999999999954422 1111 12222234566
Q ss_pred HHHHHHHHHhc
Q 016062 385 LLNELVDHIMS 395 (396)
Q Consensus 385 ~l~~~~~~il~ 395 (396)
++.+++.++++
T Consensus 431 ~la~ai~~ll~ 441 (475)
T cd03813 431 ALARAILRLLK 441 (475)
T ss_pred HHHHHHHHHhc
Confidence 77777776653
No 125
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=95.61 E-value=0.21 Score=50.50 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=68.8
Q ss_pred CcEEEEEcCCC-------------CCCHHHHHHHHHH--------HHhCCC----eEEEEeCCCCC----------CCCC
Q 016062 8 CRQVVLVPIPL-------------QGHITPMLQLGTI--------LHSRGF----SITVAHAQFNS----------PHAS 52 (396)
Q Consensus 8 ~~~il~~~~~~-------------~GH~~p~l~la~~--------L~~rGH----~Vt~~~~~~~~----------~~~~ 52 (396)
.+||++++.=+ -|+..=.+.+|++ |+++|| +|+++|--... +...
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~ 334 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVY 334 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccccc
Confidence 35777766333 3566566777776 578999 66787753221 1111
Q ss_pred CCCCceEEeCCCCCCCCC---C--CCCCHHHHHHHHHHHchHHHHHHHHHHHhc-CCCcCEEEeCCch--hHHHHHHHHh
Q 016062 53 NHPDFTFLPLSDGSSSTP---K--ASDDFIDFMSNINLNCRAPLQEALTRMIAK-QEDLPCVIHDGIM--HCAEAVARHL 124 (396)
Q Consensus 53 ~~~gi~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~D~vI~D~~~--~~~~~~A~~l 124 (396)
...+++.+.+|.+-.... . ...+++.++..+.. ++.+.+... ..+||+|++..-. ..|..+++++
T Consensus 335 ~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~-------~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~l 407 (784)
T TIGR02470 335 GTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAE-------DAEKEILAELQGKPDLIIGNYSDGNLVASLLARKL 407 (784)
T ss_pred CCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHH-------HHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhc
Confidence 225777777775433211 1 11233333443332 233333221 1279999997633 4568899999
Q ss_pred CCCeEEEeCch
Q 016062 125 KLPSIILYTLN 135 (396)
Q Consensus 125 giP~v~~~~~~ 135 (396)
|||.+...++.
T Consensus 408 gVP~v~t~HsL 418 (784)
T TIGR02470 408 GVTQCTIAHAL 418 (784)
T ss_pred CCCEEEECCcc
Confidence 99988876663
No 126
>PLN00142 sucrose synthase
Probab=95.43 E-value=0.11 Score=52.57 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=57.5
Q ss_pred HHHHHHHhCCCeEE----EEeCC--CC-----C---CCCCCCCCceEEeCCCCCCCCCC----CCCCHHHHHHHHHHHch
Q 016062 27 QLGTILHSRGFSIT----VAHAQ--FN-----S---PHASNHPDFTFLPLSDGSSSTPK----ASDDFIDFMSNINLNCR 88 (396)
Q Consensus 27 ~la~~L~~rGH~Vt----~~~~~--~~-----~---~~~~~~~gi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 88 (396)
.++++|+++||+|+ ++|-- .. . +.....++.+.+.+|-+-.+..- ...+++.++..+..
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~--- 395 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAE--- 395 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHH---
Confidence 36688999999875 65531 11 0 11222246777777755422110 11233333443332
Q ss_pred HHHHHHHHHHHh-cCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCch
Q 016062 89 APLQEALTRMIA-KQEDLPCVIHDGIM--HCAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 89 ~~l~~~~~~l~~-~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 135 (396)
++.+.+.. ...+||+|.+..-. ..|..+++++|||.+...++.
T Consensus 396 ----~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~HsL 441 (815)
T PLN00142 396 ----DAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHAL 441 (815)
T ss_pred ----HHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcccc
Confidence 23333321 11279999998643 557789999999999988774
No 127
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.40 E-value=0.16 Score=48.85 Aligned_cols=124 Identities=10% Similarity=0.107 Sum_probs=64.4
Q ss_pred eEEEEEcCccccCCHHHHHHHHHHHHhC---CCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEE-EeecCc--cccc
Q 016062 262 SVIYVSFGSIALTGEKELAEMAWGLANS---KQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCI-VNWAPQ--RQVL 335 (396)
Q Consensus 262 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-~~~vp~--~~lL 335 (396)
..+++..|... +.+-+..+++|++++ +.++++. +.+... .+..-.....+.+.++.+ ..|-.+ ..++
T Consensus 282 ~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lviv-G~g~~~----~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 282 APLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLL-GTGDPE----LEEAFRALAARYPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred CcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEE-ecCcHH----HHHHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 34555667654 334455566666542 5565555 322100 000001122334556554 355222 2478
Q ss_pred cCccccceee---ccchh-hHHHHHHcCCceeeeccc--Ccccc---------ccccCCCCcHHHHHHHHHHHh
Q 016062 336 AHSAVGGFWT---HCGWN-SILESISEGVPMICRSAF--GDQKV---------NASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 336 ~~~~~~~~It---HGG~~-s~~eal~~GvP~v~~P~~--~DQ~~---------na~~~~~~~~~~l~~~~~~il 394 (396)
+.+++ +|. +-|.| +.+||+++|+|+|+.-.. .|.-. |+-.-...+..+|.+++.+++
T Consensus 355 ~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 355 AGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred hhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 88888 764 34544 889999999999986543 23222 222222345567777776654
No 128
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.29 E-value=0.2 Score=46.82 Aligned_cols=76 Identities=8% Similarity=0.165 Sum_probs=49.4
Q ss_pred HhcCCcEEEeecCccc---cccCccccceeec----cch-hhHHHHHHcCCceeeecccC--cc---ccccc-cCCCCcH
Q 016062 318 TVEKRGCIVNWAPQRQ---VLAHSAVGGFWTH----CGW-NSILESISEGVPMICRSAFG--DQ---KVNAS-RKGGSSY 383 (396)
Q Consensus 318 ~~~~~~~~~~~vp~~~---lL~~~~~~~~ItH----GG~-~s~~eal~~GvP~v~~P~~~--DQ---~~na~-~~~~~~~ 383 (396)
.++.++.+.+++|+.+ +++.+++ +|.- .|. .++.||+++|+|+|+....+ |- ..|+. -....+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~ 331 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHLAEPMTS 331 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEEeCCCCH
Confidence 3456788889998644 6888888 6642 443 57789999999999976532 21 12221 1122356
Q ss_pred HHHHHHHHHHhc
Q 016062 384 NLLNELVDHIMS 395 (396)
Q Consensus 384 ~~l~~~~~~il~ 395 (396)
.++.+++.++++
T Consensus 332 ~~la~~I~~ll~ 343 (380)
T PRK15484 332 DSIISDINRTLA 343 (380)
T ss_pred HHHHHHHHHHHc
Confidence 777777777664
No 129
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=95.26 E-value=0.14 Score=41.51 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=50.0
Q ss_pred hcCCcEEEeecC--c-cccccCccccceeec----cchhhHHHHHHcCCceeeecccC--c---cccccccCCCCcHHHH
Q 016062 319 VEKRGCIVNWAP--Q-RQVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAFG--D---QKVNASRKGGSSYNLL 386 (396)
Q Consensus 319 ~~~~~~~~~~vp--~-~~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~~--D---Q~~na~~~~~~~~~~l 386 (396)
+.+++.+..+++ + ..++..+++ +|+. |+..++.||+++|+|+|+--..+ | ...|+-.-...+..++
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l 148 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEEL 148 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHH
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHH
Confidence 457889999998 3 448888888 8877 67779999999999999865321 1 1122222223377888
Q ss_pred HHHHHHHhc
Q 016062 387 NELVDHIMS 395 (396)
Q Consensus 387 ~~~~~~il~ 395 (396)
.+.|.+++.
T Consensus 149 ~~~i~~~l~ 157 (172)
T PF00534_consen 149 ADAIEKLLN 157 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 888887763
No 130
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.14 Score=48.62 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHh------cCCcEEEeecCc-
Q 016062 259 TQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETV------EKRGCIVNWAPQ- 331 (396)
Q Consensus 259 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~------~~~~~~~~~vp~- 331 (396)
++..+||+||+...+..++.+..=++=++..+--++|..+++..++ .-..+++.. .++.++..-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~------~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE------INARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH------HHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 3467999999999999999999988888888888899887752111 112222211 245555555443
Q ss_pred --cccccCccccceee---ccchhhHHHHHHcCCceeeecccCccc
Q 016062 332 --RQVLAHSAVGGFWT---HCGWNSILESISEGVPMICRSAFGDQK 372 (396)
Q Consensus 332 --~~lL~~~~~~~~It---HGG~~s~~eal~~GvP~v~~P~~~DQ~ 372 (396)
.+=++-+|+ |.- =||+.|..|+|+.|||||..+ ++|+
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 334455666 654 599999999999999999875 5555
No 131
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=95.01 E-value=0.28 Score=46.24 Aligned_cols=123 Identities=19% Similarity=0.147 Sum_probs=68.2
Q ss_pred eEEEEEcCccccCCHHHHHHHHHHHHhC-----CCCeEEEECCCCCCCCCCCCCCchhHHHH-----hcCCcEEEeecCc
Q 016062 262 SVIYVSFGSIALTGEKELAEMAWGLANS-----KQPFLWVLRPGSADGLDPTDLLPDSFKET-----VEKRGCIVNWAPQ 331 (396)
Q Consensus 262 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~~~~~vp~ 331 (396)
+..+++.|.... .+.+..+++|+.+. +.++.|.+-++. . ..+.+.+. ...++.+.+|+++
T Consensus 230 ~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g-~-------~~~~l~~~~~~~~~~~~V~f~G~v~~ 299 (407)
T cd04946 230 TLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGG-P-------LEDTLKELAESKPENISVNFTGELSN 299 (407)
T ss_pred CEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCc-h-------HHHHHHHHHHhcCCCceEEEecCCCh
Confidence 445666777654 23344555555542 235555543321 0 11222221 1346778899997
Q ss_pred cc---cccCccccceeecc----chhhHHHHHHcCCceeeeccc--Ccccccc---c-cCCCCcHHHHHHHHHHHh
Q 016062 332 RQ---VLAHSAVGGFWTHC----GWNSILESISEGVPMICRSAF--GDQKVNA---S-RKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 332 ~~---lL~~~~~~~~ItHG----G~~s~~eal~~GvP~v~~P~~--~DQ~~na---~-~~~~~~~~~l~~~~~~il 394 (396)
.+ ++..+++.+||... --++++||+++|+|+|+-... .|...+. - -....+..++.++|.+++
T Consensus 300 ~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll 375 (407)
T cd04946 300 SEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFI 375 (407)
T ss_pred HHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 64 44443333376543 256899999999999975543 2333333 2 222345677888887775
No 132
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.97 E-value=0.074 Score=50.88 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=71.4
Q ss_pred CCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHh------cCCcEEEeecCcc
Q 016062 259 TQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETV------EKRGCIVNWAPQR 332 (396)
Q Consensus 259 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~------~~~~~~~~~vp~~ 332 (396)
++..+||++|--....+++.++.-++-|++.+.-++|.......-+ .++.+.. |+++.+..-+.-.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--------HHHHHHHHHhCCCccceeeccccchH
Confidence 3457999999988889999999999999999999999987653111 2332221 4555554443322
Q ss_pred c-----cccCccccceeeccchhhHHHHHHcCCceeeecccCcccccc
Q 016062 333 Q-----VLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNA 375 (396)
Q Consensus 333 ~-----lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na 375 (396)
+ .|..-.+.-+.+. |+.|.++.|+.|||||.+|...=-...|
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa 874 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVA 874 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHH
Confidence 2 2222222224554 6889999999999999999854333333
No 133
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.90 E-value=0.37 Score=38.84 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHHHH
Q 016062 20 GHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRAPLQEALTRMI 99 (396)
Q Consensus 20 GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 99 (396)
|=-.-+..|+++|+++||+|+++++......... ........... ........... ...+...+++.
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~i~~~- 79 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE----LVKIFVKIPYP---IRKRFLRSFFF-----MRRLRRLIKKE- 79 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST----EEEE---TT-S---STSS--HHHHH-----HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh----ccceeeeeecc---cccccchhHHH-----HHHHHHHHHHc-
Confidence 5667789999999999999999988533332221 11111100000 00111111111 12233444444
Q ss_pred hcCCCcCEEEeCCch-hHHHHHHHHhCCCeEEEeCchH
Q 016062 100 AKQEDLPCVIHDGIM-HCAEAVARHLKLPSIILYTLNP 136 (396)
Q Consensus 100 ~~~~~~D~vI~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 136 (396)
++|+|-..... .+....+-. ++|.+...+...
T Consensus 80 ----~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 80 ----KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp ----T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred ----CCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 79999555433 333333333 999999887754
No 134
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.33 E-value=0.49 Score=45.65 Aligned_cols=124 Identities=10% Similarity=0.026 Sum_probs=65.5
Q ss_pred EEEEEcCccccCCHHHHHHHHHHHHh---CCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCcc---cccc
Q 016062 263 VIYVSFGSIALTGEKELAEMAWGLAN---SKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQR---QVLA 336 (396)
Q Consensus 263 vv~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~---~lL~ 336 (396)
.+++..|.... .+-+..+++|+.+ .+.++++. +.+. .. .+..-..+..+.+.++.+....+.. .+++
T Consensus 292 ~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~-G~g~-~~---~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 292 PLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVL-GTGD-PE---LEEALRELAERYPGNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred CEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEE-CCCC-HH---HHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Confidence 35555677653 3334455555554 34454444 3321 00 0000112222345666666555543 4778
Q ss_pred Cccccceee---ccchh-hHHHHHHcCCceeeeccc--Cccccc---------cccCCCCcHHHHHHHHHHHhc
Q 016062 337 HSAVGGFWT---HCGWN-SILESISEGVPMICRSAF--GDQKVN---------ASRKGGSSYNLLNELVDHIMS 395 (396)
Q Consensus 337 ~~~~~~~It---HGG~~-s~~eal~~GvP~v~~P~~--~DQ~~n---------a~~~~~~~~~~l~~~~~~il~ 395 (396)
.+++ ++. +-|.| +++||+++|+|+|+-... .|.-.+ +-.-...+..+|.++|.++++
T Consensus 365 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 365 GADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred hCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 8888 663 23444 789999999999986553 233322 222233456677777776653
No 135
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.89 E-value=2.1 Score=39.14 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLN 86 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
++|+++-...-|++.-.+.+-+.|+++ +.++++++++...+.....+.++-+..-... . .. .
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~-----~-~~-~--------- 65 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKK-----K-KG-L--------- 65 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhcccccc-----c-cc-c---------
Confidence 579999999999999999999999999 5999999997776666554555433321110 0 00 0
Q ss_pred chHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 87 CRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 87 ~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
.......+.+.+.+. ++|+||.=....-...++..+++|.-.-.
T Consensus 66 ~~~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~g~ 109 (334)
T COG0859 66 GLKERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRIGF 109 (334)
T ss_pred chHHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccccc
Confidence 011222455555544 69999977666667778888888877643
No 136
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.91 E-value=0.92 Score=36.02 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDG 65 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~ 65 (396)
.+||++.-.|+-|-..-.+.|+..|.++|+.|-=+.++.-.+.- ...|++.+.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gG-kR~GF~Ivdl~tg 61 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGG-KRIGFKIVDLATG 61 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCC-eEeeeEEEEccCC
Confidence 57899999999999999999999999999998776665554433 3368988888743
No 137
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=91.71 E-value=14 Score=36.16 Aligned_cols=46 Identities=28% Similarity=0.250 Sum_probs=35.8
Q ss_pred cCCcEEEeecCc-cccccCccccceee---ccc-hhhHHHHHHcCCceeeecc
Q 016062 320 EKRGCIVNWAPQ-RQVLAHSAVGGFWT---HCG-WNSILESISEGVPMICRSA 367 (396)
Q Consensus 320 ~~~~~~~~~vp~-~~lL~~~~~~~~It---HGG-~~s~~eal~~GvP~v~~P~ 367 (396)
.+||.+.+|..+ ..+|+.+++ ||. .-| -+++.||+++|+|+|+...
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv 504 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA 504 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC
Confidence 467888888655 447888888 875 344 5699999999999998765
No 138
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=91.21 E-value=2.5 Score=38.96 Aligned_cols=110 Identities=12% Similarity=0.134 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCCCCCCCCHHHHH
Q 016062 4 QGHRCRQVVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHAQFNSPHASNHPDFTF-LPLSDGSSSTPKASDDFIDFM 80 (396)
Q Consensus 4 m~~~~~~il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~gi~~-~~~~~~~~~~~~~~~~~~~~~ 80 (396)
|.+..+||+++-....|++.-...+.++|+++ +.+|++++.+.+.+.....+.++- +.++.. .......+
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~-------~~~~~~~~ 73 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK-------KAGASEKI 73 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc-------cccHHHHH
Confidence 44446789999999999999999999999998 899999999777666655566643 333311 00111111
Q ss_pred HHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEE
Q 016062 81 SNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSII 130 (396)
Q Consensus 81 ~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 130 (396)
. .+..+++++... ++|++|.=........++...|.+..+
T Consensus 74 ~--------~~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 74 K--------NFFSLIKVLRAN--KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred H--------HHHHHHHHHhhC--CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 1 112344555544 799999654444456677777887755
No 139
>PHA01633 putative glycosyl transferase group 1
Probab=90.83 E-value=1.3 Score=40.42 Aligned_cols=74 Identities=12% Similarity=0.017 Sum_probs=46.7
Q ss_pred hcCCcEEEe---ecCcc---ccccCccccceeec----cchhhHHHHHHcCCceeeecc------cCcc------cccc-
Q 016062 319 VEKRGCIVN---WAPQR---QVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSA------FGDQ------KVNA- 375 (396)
Q Consensus 319 ~~~~~~~~~---~vp~~---~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~------~~DQ------~~na- 375 (396)
+++++.+.. ++++. ++++.+++ ||.- |=..++.||+++|+|+|+--. .+|+ .+++
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 456777774 44543 57888888 7752 334578999999999998522 2232 1122
Q ss_pred --------c--cCCCCcHHHHHHHHHHHh
Q 016062 376 --------S--RKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 376 --------~--~~~~~~~~~l~~~~~~il 394 (396)
. .....+.+++.+++..++
T Consensus 277 ~~~~~~~g~g~~~~~~d~~~la~ai~~~~ 305 (335)
T PHA01633 277 EYYDKEHGQKWKIHKFQIEDMANAIILAF 305 (335)
T ss_pred HhcCcccCceeeecCCCHHHHHHHHHHHH
Confidence 1 223457788888887764
No 140
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=90.22 E-value=9.4 Score=33.23 Aligned_cols=112 Identities=11% Similarity=0.048 Sum_probs=63.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCCC-CCCCCCCCCCHHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN----HPDFTFLPLSDG-SSSTPKASDDFIDFMSN 82 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~----~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (396)
+||||+.-=.+. |---+.+|+++|.+.| +|+++.|....+.... ...+++..+... -.........+.....
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV~- 81 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCIK- 81 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHHH-
Confidence 578887765554 5566899999999888 7999999766544321 123444333210 0000111122222211
Q ss_pred HHHHchHHHHHHHHHHHhcCCCcCEEEeCC----------c---hhHHHHHHHHhCCCeEEEeCc
Q 016062 83 INLNCRAPLQEALTRMIAKQEDLPCVIHDG----------I---MHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 83 ~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 134 (396)
-.+..+... +||+||+-. + +.+|..-|..+|||.|.++..
T Consensus 82 ----------lal~~~~~~--~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 82 ----------VALSHILPE--KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred ----------HHHHhhcCC--CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 122233322 689998642 2 245566778889999999863
No 141
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.98 E-value=5.5 Score=32.33 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=24.4
Q ss_pred CcCEEEeCCch--hHHHHHHHHh------CCCeEEEeCc
Q 016062 104 DLPCVIHDGIM--HCAEAVARHL------KLPSIILYTL 134 (396)
Q Consensus 104 ~~D~vI~D~~~--~~~~~~A~~l------giP~v~~~~~ 134 (396)
+||+||+..-. .....+|..+ |.+.|.+-+.
T Consensus 92 rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 92 RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 79999999754 4456788888 9999997554
No 142
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=87.45 E-value=5 Score=36.93 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=69.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEe-CCCCCCCCCCCCCCHHHHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHAQFNSPHASNHPDFTFLP-LSDGSSSTPKASDDFIDFMSNINL 85 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
|||+++-..+.|++.-...+.++|+++ +.+|++++.+.+.......+.++.+. ++.. . .... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~-----~---~~~~-~----- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG-----H---GALE-I----- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc-----c---chhh-h-----
Confidence 479999999999999999999999997 89999999976666665556665433 2211 0 0000 0
Q ss_pred HchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEE
Q 016062 86 NCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSII 130 (396)
Q Consensus 86 ~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 130 (396)
.....+.+++... ++|++|.=....-...++...|+|.-+
T Consensus 67 ---~~~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---GERRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---HHHHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1122344556554 799998654445566777777887654
No 143
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=87.39 E-value=6.3 Score=34.00 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC----CCceEEeCCCCCCCCCCCCCCHHHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNH----PDFTFLPLSDGSSSTPKASDDFIDFMSNIN 84 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
|||++.-=.+. |.--+.+|++.|. .+++|+++.|..+.+..... ..++...+... .......+..
T Consensus 1 mrILlTNDDGi-~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~---~~av~GTPaD------ 69 (252)
T COG0496 1 MRILLTNDDGI-HAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNG---AYAVNGTPAD------ 69 (252)
T ss_pred CeEEEecCCcc-CCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEeccc---eEEecCChHH------
Confidence 34555544442 6677899999999 99999999997776554321 22332222220 0000111111
Q ss_pred HHchHHHHHHHHHHHhcCCCcCEEEeCC----------c---hhHHHHHHHHhCCCeEEEeCc
Q 016062 85 LNCRAPLQEALTRMIAKQEDLPCVIHDG----------I---MHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 85 ~~~~~~l~~~~~~l~~~~~~~D~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 134 (396)
+..--+..+.+.. .||+||+-. + +.+|..=|..+|||.|.++..
T Consensus 70 -----CV~lal~~l~~~~-~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 70 -----CVILGLNELLKEP-RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred -----HHHHHHHHhccCC-CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 1112233443322 599998642 1 244566678899999998876
No 144
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=86.58 E-value=3.6 Score=36.26 Aligned_cols=82 Identities=17% Similarity=0.079 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhC-CCCeEEEECCCCCCCCCCCCCCchhHHHHh---cCCcEEEeecCccccccCccccceeeccchhhH
Q 016062 277 KELAEMAWGLANS-KQPFLWVLRPGSADGLDPTDLLPDSFKETV---EKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSI 352 (396)
Q Consensus 277 ~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~---~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~ 352 (396)
.+.+.+.++.+.. +.++++...+..... ......+.. +..+.+.+-++-.++|.+++. +||-.+. .-
T Consensus 141 ~~~~~l~~~~~~~p~~~lvvK~HP~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vG 211 (269)
T PF05159_consen 141 DFLDMLESFAKENPDAKLVVKPHPDERGG------NKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINST-VG 211 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECchhhCC------CChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECCH-HH
Confidence 3444455555554 567777766632111 011222222 233334466777889999888 8888765 67
Q ss_pred HHHHHcCCceeeecc
Q 016062 353 LESISEGVPMICRSA 367 (396)
Q Consensus 353 ~eal~~GvP~v~~P~ 367 (396)
.||+.+|+|++++..
T Consensus 212 lEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 212 LEALLHGKPVIVFGR 226 (269)
T ss_pred HHHHHcCCceEEecC
Confidence 899999999999876
No 145
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=86.56 E-value=4.6 Score=30.40 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|+++...+..-|-.-+..|+..|.++||+|.++-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 68899999999999999999999999999998855
No 146
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=86.52 E-value=0.75 Score=37.30 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
|||+++.-.+ ++ -..|+++..+|||+||.++-+..
T Consensus 1 mKIaiIgAsG--~~--Gs~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASG--KA--GSRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCc--hh--HHHHHHHHHhCCCeeEEEEeChH
Confidence 4677776544 33 24689999999999999998544
No 147
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=86.06 E-value=1.3 Score=33.36 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=26.1
Q ss_pred cEEEEEcCCCCC---CHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 9 RQVVLVPIPLQG---HITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 9 ~~il~~~~~~~G---H~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
+||+|+.-|-.+ .-....+++.+-++|||+|.++.+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 478888877643 3346889999999999999999884
No 148
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=85.72 E-value=23 Score=30.71 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCC--CCCCCCCCCCCHHHHHHHH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN----HPDFTFLPLSD--GSSSTPKASDDFIDFMSNI 83 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~----~~gi~~~~~~~--~~~~~~~~~~~~~~~~~~~ 83 (396)
|||+.==.+. |---+.+|+++|.+.| +|+++.|....+.... ...+++..++. .. ........+......
T Consensus 2 ~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~~~~v~GTPaDcv~~- 77 (244)
T TIGR00087 2 KILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-HIYAVDGTPTDCVIL- 77 (244)
T ss_pred eEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-cEEEEcCcHHHHHHH-
Confidence 4555443332 4556889999999998 8999999766644431 12344444331 10 000111222221111
Q ss_pred HHHchHHHHHHHHHHHhcCCCcCEEEeCC----------c---hhHHHHHHHHhCCCeEEEeCc
Q 016062 84 NLNCRAPLQEALTRMIAKQEDLPCVIHDG----------I---MHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 84 ~~~~~~~l~~~~~~l~~~~~~~D~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 134 (396)
-+..+... +||+||+-. + +.+|..-|..+|||.+.++..
T Consensus 78 ----------gl~~l~~~--~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 78 ----------GINELMPE--VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred ----------HHHHhccC--CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 12223222 689998642 1 245566777889999998753
No 149
>PRK14098 glycogen synthase; Provisional
Probab=85.48 E-value=5.4 Score=38.65 Aligned_cols=75 Identities=7% Similarity=-0.075 Sum_probs=48.0
Q ss_pred HhcCCcEEEeecCcc---ccccCccccceeecc---ch-hhHHHHHHcCCceeeecccC--ccc-------cccccCCCC
Q 016062 318 TVEKRGCIVNWAPQR---QVLAHSAVGGFWTHC---GW-NSILESISEGVPMICRSAFG--DQK-------VNASRKGGS 381 (396)
Q Consensus 318 ~~~~~~~~~~~vp~~---~lL~~~~~~~~ItHG---G~-~s~~eal~~GvP~v~~P~~~--DQ~-------~na~~~~~~ 381 (396)
+.+.|+.+...++.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....+ |.. .|+---...
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~ 436 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDY 436 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCC
Confidence 456788888888763 58888888 77432 32 37789999999888866532 322 122222234
Q ss_pred cHHHHHHHHHHHh
Q 016062 382 SYNLLNELVDHIM 394 (396)
Q Consensus 382 ~~~~l~~~~~~il 394 (396)
+..+|.++|.+++
T Consensus 437 d~~~la~ai~~~l 449 (489)
T PRK14098 437 TPEALVAKLGEAL 449 (489)
T ss_pred CHHHHHHHHHHHH
Confidence 5677777776654
No 150
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=84.98 E-value=4.1 Score=39.30 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.7
Q ss_pred cEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 9 RQVVLVPIP------LQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 9 ~~il~~~~~------~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
|||++++.- .-|=-.-.-.|+++|+++||+|.++++..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 467777743 22444557899999999999999999854
No 151
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=84.58 E-value=18 Score=28.92 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=58.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe---CCCCCC---CCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAH---AQFNSP---HASNHPDFTFLPLSDGSSSTPKASDDFIDFMSN 82 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~---~~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
.-|.+++.++.|-....+.+|-+.+.+|+.|.++- ...... .....+++.+.....+..-.. .+...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~---~~~~~---- 75 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTT---ENDEE---- 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCC---CChHH----
Confidence 35788899999999999999999999999999943 321111 112225677777765432111 11111
Q ss_pred HHHHchHHHHHHHHHHHhcCCCcCEEEeCCchh
Q 016062 83 INLNCRAPLQEALTRMIAKQEDLPCVIHDGIMH 115 (396)
Q Consensus 83 ~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~ 115 (396)
-...+...++.. ++..... ++|+||.|....
T Consensus 76 ~~~~a~~~~~~a-~~~~~~~-~~dLlVLDEi~~ 106 (159)
T cd00561 76 DIAAAAEGWAFA-KEAIASG-EYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHHHHH-HHHHhcC-CCCEEEEechHh
Confidence 112223333333 3333333 799999998764
No 152
>PRK09620 hypothetical protein; Provisional
Probab=84.45 E-value=11 Score=32.42 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCCHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIPLQGHITP------------MLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p------------~l~la~~L~~rGH~Vt~~~~~ 45 (396)
+++|++...|++=.+.| -..||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46788777665444333 368999999999999999763
No 153
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=84.32 E-value=5.8 Score=38.67 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCcEEEeecC--c-cccccCccccceeecc---chhhHHHHHHcCCcee
Q 016062 321 KRGCIVNWAP--Q-RQVLAHSAVGGFWTHC---GWNSILESISEGVPMI 363 (396)
Q Consensus 321 ~~~~~~~~vp--~-~~lL~~~~~~~~ItHG---G~~s~~eal~~GvP~v 363 (396)
.+|.+.++.. + ..++.++++ +|.=+ |.++..||+.+|+|+|
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI 455 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI 455 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee
Confidence 5677778777 4 347878777 88766 7789999999999999
No 154
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=84.23 E-value=13 Score=32.45 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+|+++...+. -..|+++|.++||+|+..+....
T Consensus 2 ~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 2 TVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred eEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCC
Confidence 4666544332 67899999999999988776443
No 155
>PRK00654 glgA glycogen synthase; Provisional
Probab=84.07 E-value=8.8 Score=36.96 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=29.2
Q ss_pred cEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 9 RQVVLVPIP------LQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 9 ~~il~~~~~------~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
|||++++.- ..|--.-.-.|+++|+++||+|.++++..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y 44 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGY 44 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 467777633 22555667899999999999999999853
No 156
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=83.82 E-value=1.6 Score=35.90 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCCCHHH------------HHHHHHHHHhCCCeEEEEeCCC
Q 016062 8 CRQVVLVPIPLQGHITP------------MLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p------------~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
++||++...|++-.+.| -..||+++.+|||+|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 45677776666555544 4789999999999999999963
No 157
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=83.66 E-value=6.9 Score=35.51 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHAQFNSPHASNHPDFT 58 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~gi~ 58 (396)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+.......+.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd 52 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVD 52 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCcc
Confidence 479999999999999999999999997 99999999876655554445554
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=83.64 E-value=1.8 Score=32.67 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
||++.+.++-.|.....-++..|.++|++|+++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 488999999999999999999999999999887753
No 159
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=83.33 E-value=30 Score=30.12 Aligned_cols=110 Identities=9% Similarity=0.024 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCC--CCCCCCCCCCCHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN----HPDFTFLPLSD--GSSSTPKASDDFIDFMSN 82 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~----~~gi~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (396)
||||+.-=.+. |---+.+|+++|++ +|+|+++.|....+.... ...++...+.. +. ........+......
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~-~~y~v~GTPaDcV~l 77 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAITIRVPLWAKKVFISERF-VAYATTGTPADCVKL 77 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCceEEEeecCCCc-cEEEECCcHHHHHHH
Confidence 35666554443 55568899999975 689999999766544321 11233333221 00 001111222222221
Q ss_pred HHHHchHHHHHHHHHHHhcCCCcCEEEeCC----------c---hhHHHHHHHHhCCCeEEEeCc
Q 016062 83 INLNCRAPLQEALTRMIAKQEDLPCVIHDG----------I---MHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 83 ~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 134 (396)
-+..+... +||+||+-. + +.+|..-|..+|||.|.++..
T Consensus 78 -----------al~~~~~~--~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 129 (253)
T PRK13935 78 -----------GYDVIMDK--KVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSA 129 (253)
T ss_pred -----------HHHhhccC--CCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcc
Confidence 12222222 699998642 2 244566677889999999863
No 160
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=83.13 E-value=31 Score=30.21 Aligned_cols=108 Identities=12% Similarity=0.065 Sum_probs=59.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCCCCCCCCCCCCCHHHHHHHHHH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN----HPDFTFLPLSDGSSSTPKASDDFIDFMSNINL 85 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~----~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
|||+.-=.+. |-.-+.+|+++|.+.| +|+++.|....+.... ...++...+...-.........+......
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~~~y~v~GTPaDCV~l--- 76 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGFKVYATSGTPSDTIYL--- 76 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccccCCCCcEEEEeccCCcceEEeCCCHHHHHHH---
Confidence 4665554443 5566899999999888 7999999766544321 12344433321000001111222222221
Q ss_pred HchHHHHHHHHHHHhcCCCcCEEEe----------C-Cch---hHHHHHHHHhCCCeEEEeC
Q 016062 86 NCRAPLQEALTRMIAKQEDLPCVIH----------D-GIM---HCAEAVARHLKLPSIILYT 133 (396)
Q Consensus 86 ~~~~~l~~~~~~l~~~~~~~D~vI~----------D-~~~---~~~~~~A~~lgiP~v~~~~ 133 (396)
.+..+ .. +||+||+ | .++ .+|..-|..+|||.|.++.
T Consensus 77 --------al~~l-~~--~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 77 --------ATYGL-GR--KYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred --------HHHhc-cC--CCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 11222 12 6999986 4 222 4455667889999999986
No 161
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=82.79 E-value=2.5 Score=32.53 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
|||++...++.+=.. ...+.++|.++|++|.++.++..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcH
Confidence 578888888865555 99999999999999999998544
No 162
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.61 E-value=9.4 Score=32.50 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=60.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCC---------CCCCC---H
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTP---------KASDD---F 76 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---------~~~~~---~ 76 (396)
..++|+|+.-+ ....+++++++||+|.+=.|=.........+| .+-.....+. ....+ +
T Consensus 55 VTlA~~P~~~~-----~~~~~~~A~~~G~evlih~PmeP~~~~~~e~g----tL~~~~s~~e~~~rl~~a~~~v~~~~Gl 125 (250)
T COG2861 55 VTLAFAPFAPH-----AREWAQKARNAGHEVLIHMPMEPFSYPKIEPG----TLRPGMSAEEILRRLRKAMNKVPDAVGL 125 (250)
T ss_pred ceEEecCCCch-----hHHHHHHHHhcCCEEEEeccCCcccCCCCCCC----CcccCCCHHHHHHHHHHHHhhCccceee
Confidence 45666665542 45788899999999988776333222221122 1111100000 00000 1
Q ss_pred HHHHHHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhH---HHHHHHHhCCCeEEE
Q 016062 77 IDFMSNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHC---AEAVARHLKLPSIIL 131 (396)
Q Consensus 77 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~---~~~~A~~lgiP~v~~ 131 (396)
...+......-...++.++++|. +-++.+.|..+.+ +..+|...|||++.=
T Consensus 126 nNhmGs~~tsn~~aM~~~m~~Lk----~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 126 NNHMGSRFTSNEDAMEKLMEALK----ERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred hhhhhhhhcCcHHHHHHHHHHHH----HCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 11111111233455666778886 5799999998754 467899999999873
No 163
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=82.59 E-value=32 Score=29.92 Aligned_cols=107 Identities=16% Similarity=0.131 Sum_probs=59.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCCCCCCCCCCCCCHHHHHHHHHH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN----HPDFTFLPLSDGSSSTPKASDDFIDFMSNINL 85 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~----~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
|||+.==.+. |..-+.+|+++|.+. |+|+++.|....+.... ...++...+.+. .......+.....
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~---~~~v~GTPaDcV~---- 72 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG---FYAVDGTPTDCVH---- 72 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCC---eEEECCcHHHHHH----
Confidence 4555554443 555689999999998 79999999766644431 123444333211 0011112222111
Q ss_pred HchHHHHHHHHHHHhcCCCcCEEEeCC----------c---hhHHHHHHHHhCCCeEEEeCc
Q 016062 86 NCRAPLQEALTRMIAKQEDLPCVIHDG----------I---MHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 86 ~~~~~l~~~~~~l~~~~~~~D~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 134 (396)
--+..+... +||+||+-. + +..|..-|...|||.+.++..
T Consensus 73 -------~gl~~l~~~--~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 73 -------LALNGLLDP--KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred -------HHHHhhccC--CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 112233222 689998642 2 244566778899999999763
No 164
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.57 E-value=22 Score=29.48 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=61.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC---CC---CCCCCCCceEEeCCCCCCCCCCCCCCHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN---SP---HASNHPDFTFLPLSDGSSSTPKASDDFIDFMS 81 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~---~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (396)
+..|.++...+.|-....+.+|-+.+.+|++|.++--=.. .. ......++.+.....++.-.. .+..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~---~~~~---- 94 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET---QDRE---- 94 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC---CCcH----
Confidence 4689999999999999999999999999999988653111 11 112224788877775432111 1111
Q ss_pred HHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchh
Q 016062 82 NINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMH 115 (396)
Q Consensus 82 ~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~ 115 (396)
.-...+...+....+.+. +. ++|+||.|..+.
T Consensus 95 e~~~~~~~~~~~a~~~l~-~~-~ydlvVLDEi~~ 126 (191)
T PRK05986 95 RDIAAAREGWEEAKRMLA-DE-SYDLVVLDELTY 126 (191)
T ss_pred HHHHHHHHHHHHHHHHHh-CC-CCCEEEEehhhH
Confidence 111223334444433333 33 799999998754
No 165
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=81.45 E-value=36 Score=29.69 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCC-CCCC-CCCCCCCCHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN----HPDFTFLPLS-DGSS-STPKASDDFIDFMSN 82 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~----~~gi~~~~~~-~~~~-~~~~~~~~~~~~~~~ 82 (396)
||||+.==.+. |---+.+|+++|.+ +|+|+++.|....+.... ...++...+. ++.. ........+.....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV~- 77 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCVR- 77 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHHH-
Confidence 35666553333 33448899999975 689999999766644321 1123322222 0000 00001112222111
Q ss_pred HHHHchHHHHHHHHHHHhcCCCcCEEEeCC----------c---hhHHHHHHHHhCCCeEEEeCc
Q 016062 83 INLNCRAPLQEALTRMIAKQEDLPCVIHDG----------I---MHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 83 ~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 134 (396)
--+..+... +||+||+-. + +.+|..-|..+|||.+.++..
T Consensus 78 ----------lal~~l~~~--~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 78 ----------VALDKLVPD--NIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred ----------HHHHHhcCC--CCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 112233322 799999642 2 245566778899999998863
No 166
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=81.10 E-value=21 Score=33.84 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHc
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNC 87 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
++|+.++..+.. ...+++.|.+-|-+|+.+++........+ ..... + +.+........+
T Consensus 285 ~gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~-~~~~~--~-~~~~~~v~~~~d------------ 343 (422)
T TIGR02015 285 KGRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA-EDKRW--L-EMLGVEVKYRAS------------ 343 (422)
T ss_pred cCeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH-HHHHH--H-HhcCCCceeccC------------
Confidence 358888887775 88999999999999999877422111110 00000 0 000000000011
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
+.+.++.+.+. +||++|.... ...+|+++|||++.+.
T Consensus 344 ---l~~~~~~l~~~--~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 344 ---LEDDMEAVLEF--EPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred ---HHHHHHHHhhC--CCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 11122333222 8999998854 5668999999999964
No 167
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=80.61 E-value=22 Score=31.58 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+-+|.+.-.|+-|-=.-.-+|.++|.++||+|-++.-++..
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 45788888999999999999999999999999998875543
No 168
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=80.49 E-value=4.2 Score=31.66 Aligned_cols=56 Identities=20% Similarity=0.104 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC---CCCCceEEeCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS---NHPDFTFLPLS 63 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~---~~~gi~~~~~~ 63 (396)
+.+|++.+.++-+|-.-..-++..|.++|++|+++...-..+.+. ...+.+++.++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 478999999999999999999999999999999998854432221 11345555554
No 169
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=80.02 E-value=8.6 Score=34.30 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=70.4
Q ss_pred cCccccCCHHHHHHHHHHHHh-CC--CCeEEEECCCCCCCCCCCCCCchhHHHHhc-CCcEEE-eecC---ccccccCcc
Q 016062 268 FGSIALTGEKELAEMAWGLAN-SK--QPFLWVLRPGSADGLDPTDLLPDSFKETVE-KRGCIV-NWAP---QRQVLAHSA 339 (396)
Q Consensus 268 ~Gs~~~~~~~~~~~~~~al~~-~~--~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~-~~vp---~~~lL~~~~ 339 (396)
.|..+. +.+...++++++.+ .+ .++++-++-+.++. +-.+.+.....+--+ +++.+. +++| +.++|+.++
T Consensus 151 vGNSgd-~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~-~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~D 228 (322)
T PRK02797 151 VGNSGD-RSNRHIEALRALHQQFGDNVKIIVPMGYPANNQ-AYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCD 228 (322)
T ss_pred EeCCCC-CcccHHHHHHHHHHHhCCCeEEEEECCcCCCCH-HHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCC
Confidence 466554 44445556666644 33 46666555532211 000001111111123 566664 6666 567999999
Q ss_pred ccceeec--cchhhHHHHHHcCCceeee---cccCccccccc------cCCCCcHHHHHHHHHH
Q 016062 340 VGGFWTH--CGWNSILESISEGVPMICR---SAFGDQKVNAS------RKGGSSYNLLNELVDH 392 (396)
Q Consensus 340 ~~~~ItH--GG~~s~~eal~~GvP~v~~---P~~~DQ~~na~------~~~~~~~~~l~~~~~~ 392 (396)
++.|+++ =|.|+++-.++.|+|+++- |++.| .+.. +.+.++...++++-++
T Consensus 229 l~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fwqd--l~e~gv~Vlf~~d~L~~~~v~e~~rq 290 (322)
T PRK02797 229 LGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFWQD--LTEQGLPVLFTGDDLDEDIVREAQRQ 290 (322)
T ss_pred EEEEeechhhHHhHHHHHHHCCCcEEEecCCchHHH--HHhCCCeEEecCCcccHHHHHHHHHH
Confidence 9888886 5899999999999999985 44433 3333 5666666666665433
No 170
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=79.84 E-value=12 Score=32.78 Aligned_cols=37 Identities=11% Similarity=0.006 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+++..-++.|.-.....+|..++++|++|.++..+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 4455567789999999999999999999999998654
No 171
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.53 E-value=21 Score=29.96 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=60.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHH-HHHHHHHHchH
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFID-FMSNINLNCRA 89 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (396)
|++.-+|+.|-..-...||++|.+++|+|.-++.. ... ++. .. +...-+.. +.+.+...
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd-y~~------~i~---~D-------Eslpi~ke~yres~~ks--- 63 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD-YLR------GIL---WD-------ESLPILKEVYRESFLKS--- 63 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh-hhh------hee---cc-------cccchHHHHHHHHHHHH---
Confidence 56666889999999999999999999998776652 211 110 00 01111111 11222111
Q ss_pred HHHHHHHHHHhcCCCcCEEEeCCchhH------HHHHHHHhCCCeEEEeCchHHHHHH
Q 016062 90 PLQEALTRMIAKQEDLPCVIHDGIMHC------AEAVARHLKLPSIILYTLNPTNLLT 141 (396)
Q Consensus 90 ~l~~~~~~l~~~~~~~D~vI~D~~~~~------~~~~A~~lgiP~v~~~~~~~~~~~~ 141 (396)
..+ ++.... +--+||+|.+.+. ....|.++..++-++....+...+.
T Consensus 64 ~~r-lldSal----kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~ 116 (261)
T COG4088 64 VER-LLDSAL----KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCL 116 (261)
T ss_pred HHH-HHHHHh----cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHH
Confidence 111 222211 2249999998744 2468899999988766554443333
No 172
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=79.49 E-value=4.6 Score=27.95 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+-++++.++...|..-+..+|+.|++.|..|...=.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 678888888889999999999999999999875543
No 173
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=79.27 E-value=59 Score=30.91 Aligned_cols=137 Identities=14% Similarity=0.113 Sum_probs=69.6
Q ss_pred hhhhccCCCCeEEEEEcCcccc----------CCHHHHHHHHHHHHhCCCCeEEEECCCC----CCCCCCCCCCchhHHH
Q 016062 252 IEWLDKQTQHSVIYVSFGSIAL----------TGEKELAEMAWGLANSKQPFLWVLRPGS----ADGLDPTDLLPDSFKE 317 (396)
Q Consensus 252 ~~~l~~~~~~~vv~vs~Gs~~~----------~~~~~~~~~~~al~~~~~~~i~~~~~~~----~~~~~~~~~lp~~~~~ 317 (396)
..|+.....+++|.+|.-.... .....+..+++.+.+.++++++.-.... ..++. ..-..+.+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~---~~~~~l~~ 301 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDR---MVALNLRQ 301 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchH---HHHHHHHH
Confidence 4555543445678887654321 1123333455555555777765533211 01100 01123333
Q ss_pred Hhc--CCcEEE--eecCc--cccccCccccceeeccchhhHHHHHHcCCceeeecccC---------ccccccccCCCCc
Q 016062 318 TVE--KRGCIV--NWAPQ--RQVLAHSAVGGFWTHCGWNSILESISEGVPMICRSAFG---------DQKVNASRKGGSS 382 (396)
Q Consensus 318 ~~~--~~~~~~--~~vp~--~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~---------DQ~~na~~~~~~~ 382 (396)
.++ .+..+. ++-+. ..+++++++ +|..==++ +.-|+..|||.+.++... .++.++...+..+
T Consensus 302 ~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlHa-~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~ 378 (426)
T PRK10017 302 HVSDPARYHVVMDELNDLEMGKILGACEL--TVGTRLHS-AIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLL 378 (426)
T ss_pred hcccccceeEecCCCChHHHHHHHhhCCE--EEEecchH-HHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCC
Confidence 333 233332 22233 367878777 88654444 445889999999999831 2222322445556
Q ss_pred HHHHHHHHHHHh
Q 016062 383 YNLLNELVDHIM 394 (396)
Q Consensus 383 ~~~l~~~~~~il 394 (396)
..+|.+.+++++
T Consensus 379 ~~~Li~~v~~~~ 390 (426)
T PRK10017 379 DGSLQAMVADTL 390 (426)
T ss_pred HHHHHHHHHHHH
Confidence 666766666654
No 174
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=79.15 E-value=44 Score=29.31 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=57.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC---CCeEEEEeCCCCCCCCC----CCCCceEEeCCCCCCCCCCCCCCHHHHHHH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSR---GFSITVAHAQFNSPHAS----NHPDFTFLPLSDGSSSTPKASDDFIDFMSN 82 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~r---GH~Vt~~~~~~~~~~~~----~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
|||+.==.+. |---+.+|+++|.+. |++|+++.|....+... -...++...+.+. .......+......
T Consensus 2 ~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~---~yav~GTPaDCV~l 77 (261)
T PRK13931 2 RILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPR---RFAAEGSPADCVLA 77 (261)
T ss_pred eEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCC---eEEEcCchHHHHHH
Confidence 4554443332 445577888888774 47999999976654432 1123455444311 01111222222221
Q ss_pred HHHHchHHHHHHHHHHHhcCCCcCEEEeC----------Cch---hHHHHHHHHhCCCeEEEeC
Q 016062 83 INLNCRAPLQEALTRMIAKQEDLPCVIHD----------GIM---HCAEAVARHLKLPSIILYT 133 (396)
Q Consensus 83 ~~~~~~~~l~~~~~~l~~~~~~~D~vI~D----------~~~---~~~~~~A~~lgiP~v~~~~ 133 (396)
.+..+.... +||+||+- .++ .+|..-|..+|||.+.++.
T Consensus 78 -----------al~~~~~~~-~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 78 -----------ALYDVMKDA-PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred -----------HHHHhcCCC-CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 122222211 69999963 222 4455667889999999975
No 175
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=78.89 E-value=3.3 Score=34.38 Aligned_cols=39 Identities=8% Similarity=-0.092 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCCCCHHH-HHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITP-MLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p-~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
++||++...++. ...- ...++++|.++||+|.++.++..
T Consensus 5 ~k~IllgVTGsi-aa~k~a~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 5 GKRIGFGLTGSH-CTYDEVMPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred CCEEEEEEcCHH-HHHHHHHHHHHHHHhCcCEEEEEECHhH
Confidence 567888777774 4555 79999999999999999988543
No 176
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=78.77 E-value=11 Score=34.30 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=67.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEE-eCCCCCCCCCCCCCCHHHHHHHHHHH
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHAQFNSPHASNHPDFTFL-PLSDGSSSTPKASDDFIDFMSNINLN 86 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
||+++-..+-|++.-...+.++|++. +.+|++++.+.+...+...+.++-+ .++.. . ....+.
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~----~-~~~~~~--------- 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG----H-GALELT--------- 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc----c-cchhhh---------
Confidence 58999999999999999999999997 9999999987665555554555432 22211 0 000110
Q ss_pred chHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEE
Q 016062 87 CRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSII 130 (396)
Q Consensus 87 ~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~ 130 (396)
....+.+++... ++|++|.-........++...|+|.-.
T Consensus 67 ---~~~~~~~~lr~~--~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 67 ---ERRRLGRSLREE--RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---HHHHHHHHHhhc--CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 112344555444 799999866555566677777887543
No 177
>PLN02939 transferase, transferring glycosyl groups
Probab=78.66 E-value=31 Score=36.15 Aligned_cols=47 Identities=13% Similarity=-0.007 Sum_probs=34.9
Q ss_pred cCCcEEEeecCcc---ccccCccccceeec----cchhhHHHHHHcCCceeeeccc
Q 016062 320 EKRGCIVNWAPQR---QVLAHSAVGGFWTH----CGWNSILESISEGVPMICRSAF 368 (396)
Q Consensus 320 ~~~~~~~~~vp~~---~lL~~~~~~~~ItH----GG~~s~~eal~~GvP~v~~P~~ 368 (396)
.++|.+..+.+.. .+++.+++ ||.- |-..+++||+++|+|.|+....
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vG 889 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTG 889 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCC
Confidence 3578888887764 48888888 7742 2244899999999999887653
No 178
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=78.24 E-value=18 Score=29.47 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=58.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE---eCCCCCC---CCCCCCCceEEeCCCCCCCCCCCCCCHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVA---HAQFNSP---HASNHPDFTFLPLSDGSSSTPKASDDFIDFMS 81 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~---~~~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (396)
+.-|.+++..+.|-..-.+.+|-+.+.+|+.|.++ -...... .... .++++.....++.-.. .+...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-~~~~~~~~g~g~~~~~---~~~~~--- 77 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-HGVEFQVMGTGFTWET---QNREA--- 77 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-cCcEEEECCCCCeecC---CCcHH---
Confidence 35688888999999999999999999999999655 3321111 1122 2677777765442111 11111
Q ss_pred HHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchh
Q 016062 82 NINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMH 115 (396)
Q Consensus 82 ~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~ 115 (396)
-...+...+....+.+. +. ++|+||.|..+.
T Consensus 78 -~~~~~~~~~~~a~~~l~-~~-~~DlvVLDEi~~ 108 (173)
T TIGR00708 78 -DTAIAKAAWQHAKEMLA-DP-ELDLVLLDELTY 108 (173)
T ss_pred -HHHHHHHHHHHHHHHHh-cC-CCCEEEehhhHH
Confidence 11122333333333333 33 799999998753
No 179
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=76.89 E-value=6.3 Score=32.83 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=62.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCCC-CCCCC---CCCCCHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASN----HPDFTFLPLSDG-SSSTP---KASDDFIDFM 80 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~----~~gi~~~~~~~~-~~~~~---~~~~~~~~~~ 80 (396)
||||+.-=.+. +-.-+..|+++|.+.||+|+++.|....+.... ...++....... ...+. .....+....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 46777665555 666789999999888899999999877654431 122333222111 11111 1112232222
Q ss_pred HHHHHHchHHHHHHHHHHHhcCCCcCEEEeCC----------c---hhHHHHHHHHhCCCeEEEeCc
Q 016062 81 SNINLNCRAPLQEALTRMIAKQEDLPCVIHDG----------I---MHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 81 ~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~----------~---~~~~~~~A~~lgiP~v~~~~~ 134 (396)
.. -+..+.... +||+||+-. + +..+..-|...|||.|.++..
T Consensus 80 ~~-----------al~~~~~~~-~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 80 KL-----------ALDGLLPDK-KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp HH-----------HHHCTSTTS-S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred HH-----------HHHhhhccC-CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 21 223333221 599999642 2 244566677889999998766
No 180
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=76.44 E-value=19 Score=34.27 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=54.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHc
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNC 87 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
++|+++...+ .....+++.|.+.|-+|..+......+... .++ .+.-...|+.+
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~--------~~~----~~~~~~~D~~~--------- 364 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQ--------KLP----VETVVIGDLED--------- 364 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHH--------hCC----cCcEEeCCHHH---------
Confidence 6788877633 366888999999999998887744322110 011 11111122211
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
+.+.+++. ++|++|.... ...+|+++|||++.+.
T Consensus 365 ---l~~~i~~~-----~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 365 ---LEDLACAA-----GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred ---HHHHHhhc-----CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 12222222 7999999875 5779999999998753
No 181
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=75.98 E-value=7.9 Score=37.05 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=34.1
Q ss_pred CcEEEEEcCCCCCCHHHH------------HHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPM------------LQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~------------l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
++||++...|++=.+.|. .+||+++..||++||+++.+..
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 579999999888777774 6899999999999999997544
No 182
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=75.92 E-value=27 Score=33.05 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=52.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHc
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNC 87 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
+.|++++..+.. ...+++.|.+-|-+|+.+.+......... ..... ++. .........++.
T Consensus 280 ~gkv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~-~~~~~--l~~-~~~~v~~~~~~~---------- 340 (416)
T cd01980 280 KGRVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSA-PDYEW--LSA-LGVEVRYRKSLE---------- 340 (416)
T ss_pred CceEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhH-HHHHH--HHh-cCCccccCCCHH----------
Confidence 347767655543 55599999999999999888422111100 00000 000 000000011111
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeC
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYT 133 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (396)
+..+.+.+. +||++|.... +..+|+++|||++.+..
T Consensus 341 -----~~~~~~~~~--~pDl~Ig~s~---~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 341 -----DDIAAVEEY--RPDLAIGTTP---LVQYAKEKGIPALYYTN 376 (416)
T ss_pred -----HHHHHHhhc--CCCEEEeCCh---hhHHHHHhCCCEEEecC
Confidence 111222222 7999998853 77899999999998643
No 183
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=74.23 E-value=49 Score=30.02 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=32.1
Q ss_pred cEEEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPI-PLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~-~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
.||++++. +|-|--.-..++|-.|++.|..|.++++++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 35666664 45689889999999999999998889886554
No 184
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=74.18 E-value=20 Score=34.13 Aligned_cols=94 Identities=11% Similarity=0.131 Sum_probs=52.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHH----
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNI---- 83 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~---- 83 (396)
++|++++.-+ .-.+.+++.|.+-|-+|..+......+.... .+..+++..
T Consensus 303 gkrv~i~g~~-----~~~~~la~~L~elGm~v~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~ 356 (435)
T cd01974 303 GKKFALYGDP-----DFLIGLTSFLLELGMEPVHVLTGNGGKRFEK---------------------EMQALLDASPYGA 356 (435)
T ss_pred CCEEEEEcCh-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHH---------------------HHHHHHhhcCCCC
Confidence 5788877533 2378888889989999977776321111000 000000000
Q ss_pred --HHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 84 --NLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 84 --~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
.-.....+.++.+.+... +||++|.... ...+|+++|||++.+.
T Consensus 357 ~~~v~~~~d~~e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 357 GAKVYPGKDLWHLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred CcEEEECCCHHHHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 000011222232333222 7999999874 6789999999998764
No 185
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=73.63 E-value=61 Score=33.06 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=60.1
Q ss_pred EEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHH-Hc
Q 016062 10 QVVLVPIP-LQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINL-NC 87 (396)
Q Consensus 10 ~il~~~~~-~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 87 (396)
.|.+.+.. ..|=-.-.+.|++.|.++|.+|-++-|-... ++. .......... ..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~------------p~~------------~~~~~~~~~~~~~ 59 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP------------PLT------------MSEVEALLASGQL 59 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC------------CCC------------HHHHHHHHhccCC
Confidence 36666544 4588999999999999999999998863221 000 0000000000 11
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCchh---------HHHHHHHHhCCCeEEEeCch
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGIMH---------CAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 135 (396)
...+..+++.+.....+.|+||+|...+ ....+|+.++.|.+.+....
T Consensus 60 ~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 60 DELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred hHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 1222223333322112699999876532 23678999999999987654
No 186
>PHA02542 41 41 helicase; Provisional
Probab=72.10 E-value=9.5 Score=36.69 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
-+++..-|+.|--.-.+.+|...++.|+.|.+++-+...
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE 230 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence 466777889999999999999999899999999986544
No 187
>PRK08760 replicative DNA helicase; Provisional
Probab=68.29 E-value=18 Score=34.94 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSR-GFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~r-GH~Vt~~~~~~~~ 48 (396)
+--|++...|+.|--.-++.+|...+.+ |+.|.+++.+...
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 3456777788999999999999988754 9999999986544
No 188
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=68.23 E-value=18 Score=34.42 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=52.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHc
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNC 87 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
+++++++..+. -...+++.|.+.|-+|..+......+.... .+.+..-....... ...
T Consensus 299 gk~v~i~~~~~-----~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~v~ 356 (428)
T cd01965 299 GKRVAIAGDPD-----LLLGLSRFLLEMGAEPVAAVTGTDNPPFEK--RMELLASLEGIPAE---------------VVF 356 (428)
T ss_pred CCEEEEEcChH-----HHHHHHHHHHHcCCcceEEEEcCCCchhHH--HHHHhhhhcCCCce---------------EEE
Confidence 57888874332 457888999999999887666322211110 00000000000000 000
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
...+.++.+.+.+. +||+||.+.. ...+|+++|+|++.+.
T Consensus 357 ~~d~~el~~~i~~~--~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 357 VGDLWDLESLAKEE--PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred CCCHHHHHHHhhcc--CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 11112233333322 7999999975 5789999999998754
No 189
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=68.03 E-value=22 Score=30.62 Aligned_cols=40 Identities=10% Similarity=0.238 Sum_probs=33.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSR-GFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~r-GH~Vt~~~~~~~~ 48 (396)
.-+++...|+.|=-.-++.++..++.. |+.|.+++.+...
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 346666777889999999999999888 9999999996544
No 190
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=67.48 E-value=19 Score=34.13 Aligned_cols=122 Identities=17% Similarity=0.258 Sum_probs=69.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCCCCCCC-----CCCCCceEEeCCCCCCCCCCCCCCHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILH-SRGFSITVAHAQFNSPHA-----SNHPDFTFLPLSDGSSSTPKASDDFIDFMSN 82 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~-~rGH~Vt~~~~~~~~~~~-----~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
.-+++...|+.|=-.-++.+|..++ +.|+.|.|++.+...... ....++....+..+ .-...++..+...
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~----~l~~~~~~~~~~~ 270 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTG----RFNDSDFNRLLNA 270 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcC----CCCHHHHHHHHHH
Confidence 4567777889999999999998887 679999999986443221 11234433222211 0000112111111
Q ss_pred HHH-------------HchHHHHHHHHHHHhcCCCcCEEEeCCch---h---------------HHHHHHHHhCCCeEEE
Q 016062 83 INL-------------NCRAPLQEALTRMIAKQEDLPCVIHDGIM---H---------------CAEAVARHLKLPSIIL 131 (396)
Q Consensus 83 ~~~-------------~~~~~l~~~~~~l~~~~~~~D~vI~D~~~---~---------------~~~~~A~~lgiP~v~~ 131 (396)
... ..-..++..++++....+++|+||.|++. . ..-.+|..+++|.+.+
T Consensus 271 ~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~l 350 (421)
T TIGR03600 271 VDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLL 350 (421)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 111 11223333444444332259999999873 1 1224788899999998
Q ss_pred eCc
Q 016062 132 YTL 134 (396)
Q Consensus 132 ~~~ 134 (396)
+..
T Consensus 351 sQl 353 (421)
T TIGR03600 351 AQL 353 (421)
T ss_pred ccc
Confidence 654
No 191
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=67.47 E-value=30 Score=32.79 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
..|+++-.++.|-..-...||..|.++|+.|.+++.+.++
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4567777788899999999999999999999999986554
No 192
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.23 E-value=36 Score=31.95 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+..|+++-..|.|-..-+..||..|..+|..|.++..+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 46788888889999999999999999999999999986543
No 193
>PRK05595 replicative DNA helicase; Provisional
Probab=67.05 E-value=22 Score=34.06 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILH-SRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~-~rGH~Vt~~~~~~~~ 48 (396)
.-+++...|+.|=-.-++.+|..++ +.|+.|.+++.+...
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~ 242 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSK 242 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCH
Confidence 3466677889999999999999876 569999999986543
No 194
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=66.92 E-value=75 Score=27.53 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=28.6
Q ss_pred EEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 11 VVLVP-IPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 11 il~~~-~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
|++.. -+|-|-..-...||..|+++|+.|+.+=-.
T Consensus 4 iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 4 IAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 55554 456799999999999999999999887653
No 195
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=66.80 E-value=12 Score=31.39 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=35.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
+.||++.+.++-.|-....-++..|..+|++|+++....
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~ 120 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDV 120 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCC
Confidence 579999999999999999999999999999998887643
No 196
>PRK06849 hypothetical protein; Provisional
Probab=66.68 E-value=13 Score=34.88 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
+++|++.-... ...+.+++.|.++||+|+++...
T Consensus 4 ~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 4 KKTVLITGARA----PAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888885333 36899999999999999998774
No 197
>PHA01630 putative group 1 glycosyl transferase
Probab=66.01 E-value=26 Score=31.97 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=28.3
Q ss_pred eecCccc---cccCcccccee--ec-cc-hhhHHHHHHcCCceeeeccc
Q 016062 327 NWAPQRQ---VLAHSAVGGFW--TH-CG-WNSILESISEGVPMICRSAF 368 (396)
Q Consensus 327 ~~vp~~~---lL~~~~~~~~I--tH-GG-~~s~~eal~~GvP~v~~P~~ 368 (396)
.++|+.+ +++.+++ || +. .| ..++.||+++|+|+|+.-..
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 3366544 6788888 65 23 32 56899999999999996553
No 198
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=65.95 E-value=47 Score=29.92 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=26.7
Q ss_pred EEEEEcCCCC-CC---HHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 10 QVVLVPIPLQ-GH---ITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 10 ~il~~~~~~~-GH---~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
||+++..+.. =| +.....+.++|.++||+|.++...
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~ 40 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDID 40 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeec
Confidence 3566665533 24 457888999999999999998774
No 199
>PRK08506 replicative DNA helicase; Provisional
Probab=65.80 E-value=23 Score=34.19 Aligned_cols=122 Identities=14% Similarity=0.218 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-----CCCCCceEEeCCCCCCCCCCCCCCHHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHA-----SNHPDFTFLPLSDGSSSTPKASDDFIDFMSNI 83 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~-----~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
.-+++...|+.|=-.-.+.+|...++.|+.|.|++.+...... ....++....+..+-. ...++..+....
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l----~~~e~~~~~~a~ 268 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDL----DDDEWERLSDAC 268 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCC----CHHHHHHHHHHH
Confidence 4567777889999999999999998899999999986544221 1123444333321100 001111111111
Q ss_pred HH-------------HchHHHHHHHHHHHhcCCCcCEEEeCCchhH-------------------HHHHHHHhCCCeEEE
Q 016062 84 NL-------------NCRAPLQEALTRMIAKQEDLPCVIHDGIMHC-------------------AEAVARHLKLPSIIL 131 (396)
Q Consensus 84 ~~-------------~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~-------------------~~~~A~~lgiP~v~~ 131 (396)
.. ..-..++..++++.....+.|+||+|++..- .-.+|..++||.+.+
T Consensus 269 ~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~l 348 (472)
T PRK08506 269 DELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIAL 348 (472)
T ss_pred HHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 11 0122333444555443225899999986311 123688999999998
Q ss_pred eCc
Q 016062 132 YTL 134 (396)
Q Consensus 132 ~~~ 134 (396)
+..
T Consensus 349 sQL 351 (472)
T PRK08506 349 SQL 351 (472)
T ss_pred eec
Confidence 654
No 200
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=65.79 E-value=8.2 Score=31.82 Aligned_cols=38 Identities=8% Similarity=0.029 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
+||++.-.++.|=+.-...+.++|.++|++|.++.++.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 36777777776666666799999999999999988853
No 201
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=64.85 E-value=1.2e+02 Score=29.00 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.4
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
+||++|.+.. ...+|+++|||++.+.
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 7999999975 5789999999998763
No 202
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=64.81 E-value=53 Score=28.00 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCe-EEEEeCC
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFS-ITVAHAQ 45 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~-Vt~~~~~ 45 (396)
|+|.-.|..|--.....|.++|+++||. ++.+..+
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 7888899999999999999999999987 5555543
No 203
>PRK10867 signal recognition particle protein; Provisional
Probab=64.71 E-value=44 Score=31.80 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSR-GFSITVAHAQFNSP 49 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~r-GH~Vt~~~~~~~~~ 49 (396)
..|+++-.++.|-..-...||..|+++ |+.|.++..+.++.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 456666677889999999999999999 99999999976554
No 204
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=64.04 E-value=35 Score=32.51 Aligned_cols=91 Identities=4% Similarity=0.044 Sum_probs=58.0
Q ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHhC-CCCeEEEECCCCCCCCCCCCCCchhHH--HHhcCCcEEE-eecC-c-cc
Q 016062 260 QHSVIYVSFGSIALTGEKELAEMAWGLANS-KQPFLWVLRPGSADGLDPTDLLPDSFK--ETVEKRGCIV-NWAP-Q-RQ 333 (396)
Q Consensus 260 ~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~--~~~~~~~~~~-~~vp-~-~~ 333 (396)
.+.++.+| +...++.+.+..+++ +..+=+..+.. ..+.+. .+. +|+.+. .+.+ + .+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----------~s~kL~~L~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----------MSSKLMSLDKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----------ccHHHHHHHhc-CCcEEECCcChHHHHH
Confidence 34566665 245566666666664 34433332221 112221 233 666666 6677 4 55
Q ss_pred cccCccccceeeccc--hhhHHHHHHcCCceeeeccc
Q 016062 334 VLAHSAVGGFWTHCG--WNSILESISEGVPMICRSAF 368 (396)
Q Consensus 334 lL~~~~~~~~ItHGG--~~s~~eal~~GvP~v~~P~~ 368 (396)
++..+++-+-|+||+ ..++.||+.+|+|++..=..
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t 380 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEET 380 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecc
Confidence 999999988999976 67999999999999986553
No 205
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=63.82 E-value=30 Score=31.32 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=29.5
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 14 VPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 14 ~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
++.++.|-.--.+.||++|++||..+-+++-..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 457888999999999999999999999999843
No 206
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=63.65 E-value=39 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=27.6
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 15 PIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 15 ~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+-|+-|--.-...||..|+++|++|.++=.+..
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 356778899999999999999999999877433
No 207
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=63.39 E-value=41 Score=32.93 Aligned_cols=109 Identities=11% Similarity=0.127 Sum_probs=65.2
Q ss_pred CCHHHHHHHH-HHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCC---------CC-C-----CCCCHHHHHHHH
Q 016062 20 GHITPMLQLG-TILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSS---------TP-K-----ASDDFIDFMSNI 83 (396)
Q Consensus 20 GH~~p~l~la-~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~---------~~-~-----~~~~~~~~~~~~ 83 (396)
|++.-.+.+| +++.+.|++|.+... .+.....+...+..+.++-..-+ .. . .......-.+.+
T Consensus 37 ~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~ 115 (526)
T TIGR02329 37 LGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRLSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPPALRRF 115 (526)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhCCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccHHHHHH
Confidence 7777888888 447677999777666 44444333344556666522111 00 0 001111111111
Q ss_pred HH-----------HchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCc
Q 016062 84 NL-----------NCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 84 ~~-----------~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 134 (396)
.. .........++++++. ++++||.|.. +..+|+++|++.|.+.+.
T Consensus 116 ~~ll~~~i~~~~~~~~~e~~~~~~~l~~~--G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 116 QAAFNLDIVQRSYVTEEDARSCVNDLRAR--GIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHhCCceEEEEecCHHHHHHHHHHHHHC--CCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 11 1234555677888776 6999999974 678999999999998775
No 208
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=63.34 E-value=24 Score=30.29 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 016062 25 MLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~ 44 (396)
-.+||++|.++||+|+++..
T Consensus 29 G~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHHhCCCEEEEEEC
Confidence 46889999999999999875
No 209
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.05 E-value=18 Score=31.81 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=25.3
Q ss_pred CccccceeeccchhhHHHHHH------cCCceeeeccc
Q 016062 337 HSAVGGFWTHCGWNSILESIS------EGVPMICRSAF 368 (396)
Q Consensus 337 ~~~~~~~ItHGG~~s~~eal~------~GvP~v~~P~~ 368 (396)
.+++ +|+-||=||+..|++ .++|++++-..
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G 70 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG 70 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC
Confidence 4566 999999999999986 48899988763
No 210
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=62.79 E-value=57 Score=26.04 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 16 IPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 16 ~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.++-|--.-.+.|++.|+++|.+|.++-|
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~kP 34 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYYKP 34 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45668888999999999999999988743
No 211
>PRK06321 replicative DNA helicase; Provisional
Probab=62.78 E-value=28 Score=33.57 Aligned_cols=40 Identities=10% Similarity=0.201 Sum_probs=32.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~~ 48 (396)
--|++..-|+.|--.-.+.+|...+. .|+.|.|++-+...
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 45677778899999999999999874 59999999986544
No 212
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=62.72 E-value=15 Score=30.68 Aligned_cols=103 Identities=10% Similarity=-0.029 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC---CCCCceEEeCCCCCCCCCCCCCCHHHHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS---NHPDFTFLPLSDGSSSTPKASDDFIDFMSNIN 84 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~---~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (396)
+.+|++.+.++-.|-....-++.-|..+|++|+++......+.+. ...+.+++.++-... ..
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~------~~--------- 148 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMT------TT--------- 148 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccc------cC---------
Confidence 578999999999999999999999999999999998854433321 113444544442211 11
Q ss_pred HHchHHHHHHHHHHHhcCC--CcCEEEeCCchhHHHHHHHHhCCCeEE
Q 016062 85 LNCRAPLQEALTRMIAKQE--DLPCVIHDGIMHCAEAVARHLKLPSII 130 (396)
Q Consensus 85 ~~~~~~l~~~~~~l~~~~~--~~D~vI~D~~~~~~~~~A~~lgiP~v~ 130 (396)
...++++++.+.+.+. ++.++|--... ....|+++|.-.+.
T Consensus 149 ---~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad~~~ 191 (197)
T TIGR02370 149 ---MYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGADVYG 191 (197)
T ss_pred ---HHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCcEEe
Confidence 1122345555555432 24455544322 34577777765443
No 213
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=62.28 E-value=14 Score=28.04 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
||++.+.++-.|..-..-++.-|...|++|++.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5889999999999999999999999999999998853
No 214
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=62.09 E-value=46 Score=31.64 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHH-hCCCeEEEEeCCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILH-SRGFSITVAHAQFNSP 49 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~-~rGH~Vt~~~~~~~~~ 49 (396)
..|+++..+|.|-..-...||..|. ++|..|.++..+.++.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 3566777778899999999999997 5899999999976554
No 215
>PRK06904 replicative DNA helicase; Validated
Probab=62.08 E-value=32 Score=33.15 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~~ 48 (396)
.=|++..-|+.|--.-++.+|...+. .|+.|.|++.+-..
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 45677778899999999999998875 49999999986544
No 216
>PRK06835 DNA replication protein DnaC; Validated
Probab=61.89 E-value=43 Score=30.54 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=30.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
..++++-.+|.|=..=+.+||++|.++|+.|.+++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 467888888888777888999999999999998887
No 217
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=61.39 E-value=52 Score=31.59 Aligned_cols=106 Identities=16% Similarity=0.205 Sum_probs=58.9
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchH
Q 016062 11 VVLVPI-PLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRA 89 (396)
Q Consensus 11 il~~~~-~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (396)
|++... .+-|-..-...|++.|+++|++|..+-+....... .+...-.+.+. ...+... + ...
T Consensus 6 i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~------~~~~~~~g~~~---~~ld~~~-~------~~~ 69 (451)
T PRK01077 6 LVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDP------AYHTAATGRPS---RNLDSWM-M------GEE 69 (451)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccH------HHHHHHhCCCc---ccCCcee-C------CHH
Confidence 555543 34588999999999999999999988773221100 00000000000 0000000 0 012
Q ss_pred HHHHHHHHHHhcCCCcCEEEeCCc------------hhHHHHHHHHhCCCeEEEeCch
Q 016062 90 PLQEALTRMIAKQEDLPCVIHDGI------------MHCAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 90 ~l~~~~~~l~~~~~~~D~vI~D~~------------~~~~~~~A~~lgiP~v~~~~~~ 135 (396)
.+.+.++++.. +.|++|++.. ......+|+.++.|.+.+....
T Consensus 70 ~v~~~~~~~~~---~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 70 LVRALFARAAQ---GADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred HHHHHHHHhcc---cCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 33344444422 5899997543 0225689999999999998643
No 218
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=60.94 E-value=27 Score=24.67 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHHHHhcCCC
Q 016062 25 MLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRAPLQEALTRMIAKQED 104 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 104 (396)
++.+++.|++.|+++ +++. .......+ .|++....-..... .. . +.++.+. .+ +
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~-~Gi~~~~~~~ki~~-----~~-~---------------~i~~~i~-~g-~ 55 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLRE-AGLPVKTLHPKVHG-----GI-L---------------AILDLIK-NG-E 55 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHH-CCCcceeccCCCCC-----CC-H---------------HHHHHhc-CC-C
Confidence 468999999999996 4554 33333322 46654211100000 00 0 1333333 33 7
Q ss_pred cCEEEeCCc---------hhHHHHHHHHhCCCeE
Q 016062 105 LPCVIHDGI---------MHCAEAVARHLKLPSI 129 (396)
Q Consensus 105 ~D~vI~D~~---------~~~~~~~A~~lgiP~v 129 (396)
+|+||.-.. ...-..+|...+||++
T Consensus 56 id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 56 IDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred eEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 999997432 1234567888999986
No 219
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=60.73 E-value=21 Score=29.36 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=36.9
Q ss_pred EEEEEc---CCC-CCCHHH-HHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCceEEeCC
Q 016062 10 QVVLVP---IPL-QGHITP-MLQLGTILHSRGFSITVAHAQFNSP-HASNHPDFTFLPLS 63 (396)
Q Consensus 10 ~il~~~---~~~-~GH~~p-~l~la~~L~~rGH~Vt~~~~~~~~~-~~~~~~gi~~~~~~ 63 (396)
||+++- .|+ +|=+-- ...|+..|+++||+|++.+.....+ ....+.|++.+.+|
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 366665 333 354444 5678889999999999998855442 23355788888876
No 220
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=59.97 E-value=19 Score=30.98 Aligned_cols=95 Identities=8% Similarity=0.047 Sum_probs=51.7
Q ss_pred CCCeEEEEEcCcccc---CCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcC----CcEEE-e--e
Q 016062 259 TQHSVIYVSFGSIAL---TGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEK----RGCIV-N--W 328 (396)
Q Consensus 259 ~~~~vv~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~----~~~~~-~--~ 328 (396)
.+++.|.+..|+... .+.+.+..+++.+.+.++++++..+... .-....+.+.+ ++... . -
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE---------QEKEIADQIAAGLQNPVINLAGKTS 173 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH---------HHHHHHHHHHTTHTTTTEEETTTS-
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH---------HHHHHHHHHHHhcccceEeecCCCC
Confidence 346677777777554 6788899999999887756544433211 00111112222 22222 2 2
Q ss_pred cCc-cccccCccccceeeccchhhHHHHHHcCCceeee
Q 016062 329 APQ-RQVLAHSAVGGFWTHCGWNSILESISEGVPMICR 365 (396)
Q Consensus 329 vp~-~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~ 365 (396)
+.+ ..++.++++ +|+.- .|.++=|.+.|+|+|++
T Consensus 174 l~e~~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 174 LRELAALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 333 458888887 88764 57789999999999997
No 221
>PRK08006 replicative DNA helicase; Provisional
Probab=59.95 E-value=74 Score=30.71 Aligned_cols=123 Identities=12% Similarity=0.214 Sum_probs=69.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCCCCC-----CCCCCCceEEeCCCCCCCCCCCCCCHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFNSPH-----ASNHPDFTFLPLSDGSSSTPKASDDFIDFMS 81 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~~~~-----~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (396)
+.-|++..-|+.|--.-.+.+|...+. .|+.|.|++.+-.... .....++....+..+- -...++.....
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~----l~~~e~~~~~~ 299 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQ----LDDEDWARISG 299 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCC----CCHHHHHHHHH
Confidence 345677778999999999999999874 5999999998644321 1122344443333211 01112222111
Q ss_pred HHHH--------------HchHHHHHHHHHHHhcCCCcCEEEeCCchhH-------------------HHHHHHHhCCCe
Q 016062 82 NINL--------------NCRAPLQEALTRMIAKQEDLPCVIHDGIMHC-------------------AEAVARHLKLPS 128 (396)
Q Consensus 82 ~~~~--------------~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~-------------------~~~~A~~lgiP~ 128 (396)
.+.. .....++...+++....++.|+||+|++... .-.+|+.++||.
T Consensus 300 a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipV 379 (471)
T PRK08006 300 TMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPV 379 (471)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeE
Confidence 1111 1122333444444433225899999985311 124678899999
Q ss_pred EEEeCc
Q 016062 129 IILYTL 134 (396)
Q Consensus 129 v~~~~~ 134 (396)
|.++.-
T Consensus 380 i~LsQL 385 (471)
T PRK08006 380 VALSQL 385 (471)
T ss_pred EEEEec
Confidence 998643
No 222
>PRK12342 hypothetical protein; Provisional
Probab=59.61 E-value=19 Score=31.43 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=53.6
Q ss_pred CHHH----HHHHHHHHHhCCCeEEEEeCCCCC--CC-C-C--CCCCce-EEeCCCCCCCCCCCCCCHHHHHHHHHHHchH
Q 016062 21 HITP----MLQLGTILHSRGFSITVAHAQFNS--PH-A-S--NHPDFT-FLPLSDGSSSTPKASDDFIDFMSNINLNCRA 89 (396)
Q Consensus 21 H~~p----~l~la~~L~~rGH~Vt~~~~~~~~--~~-~-~--~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (396)
-+|| .+.-|-+|++.|.+||.++-.+.. .. . . -..|.. .+-+.+... ...+... ...
T Consensus 32 ~iNp~D~~AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~----~g~D~~a--------ta~ 99 (254)
T PRK12342 32 KISQFDLNAIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQL----EHALPLD--------TAK 99 (254)
T ss_pred cCChhhHHHHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCcc----CCCCHHH--------HHH
Confidence 4566 466677777669999999875432 11 1 0 002321 122221110 0112111 112
Q ss_pred HHHHHHHHHHhcCCCcCEEEeCCch------hHHHHHHHHhCCCeEEEeCc
Q 016062 90 PLQEALTRMIAKQEDLPCVIHDGIM------HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 90 ~l~~~~~~l~~~~~~~D~vI~D~~~------~~~~~~A~~lgiP~v~~~~~ 134 (396)
.+...++++ +||+|++-..+ .-+..+|+.||+|++.+...
T Consensus 100 ~La~~i~~~-----~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKI-----GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHh-----CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 334455554 69999975433 23688999999999997665
No 223
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=59.53 E-value=17 Score=28.41 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+.||++.+.+.-||-.-.--+++.|+..|.+|.....
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 6899999999999999999999999999999987665
No 224
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=57.92 E-value=35 Score=31.04 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=53.4
Q ss_pred CCcEE-EeecC---ccccccCccccceeec--cchhhHHHHHHcCCceeee---cccC---ccccccc-cCCCCcHHHHH
Q 016062 321 KRGCI-VNWAP---QRQVLAHSAVGGFWTH--CGWNSILESISEGVPMICR---SAFG---DQKVNAS-RKGGSSYNLLN 387 (396)
Q Consensus 321 ~~~~~-~~~vp---~~~lL~~~~~~~~ItH--GG~~s~~eal~~GvP~v~~---P~~~---DQ~~na~-~~~~~~~~~l~ 387 (396)
+|+.+ .+++| +.++|..++++.|.+. =|.|++.-.|+.|+|+++- |++. +|..--- ..+.++...++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ 324 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVR 324 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHH
Confidence 46665 47777 4669999999777775 5899999999999999984 3332 2321111 66778888888
Q ss_pred HHHHHHhc
Q 016062 388 ELVDHIMS 395 (396)
Q Consensus 388 ~~~~~il~ 395 (396)
++-+.+.+
T Consensus 325 ea~rql~~ 332 (360)
T PF07429_consen 325 EAQRQLAN 332 (360)
T ss_pred HHHHHHhh
Confidence 87766654
No 225
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=57.87 E-value=7.3 Score=31.09 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
||+++-.+..|+ ++|..|+++||+|++...+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 456665555553 78999999999999999853
No 226
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=57.78 E-value=17 Score=29.79 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+||++...++ +...-...+.++|.++|++|.++.++..
T Consensus 1 k~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 1 KKILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred CEEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHH
Confidence 3577766666 4555667999999999999999988544
No 227
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=57.52 E-value=40 Score=30.64 Aligned_cols=96 Identities=9% Similarity=0.046 Sum_probs=58.4
Q ss_pred CCeEEEEEcCccc-c---CCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcE-EEe--ecCc-
Q 016062 260 QHSVIYVSFGSIA-L---TGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGC-IVN--WAPQ- 331 (396)
Q Consensus 260 ~~~vv~vs~Gs~~-~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~-~~~--~vp~- 331 (396)
+++.|.+.-|+.. . .+.+.+.++++.+.+.+.++++. ++.... ..-+.+....+.++. +.+ -+.+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~-G~~~e~------~~~~~i~~~~~~~~~~l~g~~sL~el 245 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLF-GSAKDH------PAGNEIEALLPGELRNLAGETSLDEA 245 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEE-EChhhH------HHHHHHHHhCCcccccCCCCCCHHHH
Confidence 4678888887742 2 67788888888887666665544 332100 011222222233222 222 2334
Q ss_pred cccccCccccceeeccchhhHHHHHHcCCceeee
Q 016062 332 RQVLAHSAVGGFWTHCGWNSILESISEGVPMICR 365 (396)
Q Consensus 332 ~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~ 365 (396)
..+++++++ +|+. -.|-++=|.+.|+|+|.+
T Consensus 246 ~ali~~a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 246 VDLIALAKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHhCCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 448888888 9986 456788899999999975
No 228
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=57.42 E-value=81 Score=24.82 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=31.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
|.+.-.++.|--..+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 566777788999999999999999999999988753
No 229
>PRK04296 thymidine kinase; Provisional
Probab=57.20 E-value=52 Score=27.16 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=29.0
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 11 VVLVPIP-LQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 11 il~~~~~-~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|.+++.+ +.|=-.-++.++.++..+|..|.++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 6666655 889999999999999999999998855
No 230
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=56.80 E-value=14 Score=30.30 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+||++...++.|=. -...+.++|.++|++|.++.++...
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~ 40 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAAT 40 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHH
Confidence 45888777775444 4899999999999999998885443
No 231
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.74 E-value=36 Score=32.03 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPH 50 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~ 50 (396)
-.|+++-.=+.|-...+-.||+.|.++|+.|.+++.+.+++.
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence 456666666889999999999999999999999999766643
No 232
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=56.47 E-value=1.1e+02 Score=26.75 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGS 66 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~ 66 (396)
++||+++.+++...-. ..+++|.++|.++.++..............++.+.+|-+.
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGf 58 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGF 58 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCC
Confidence 3689999998876443 5578898999999988764322211222467777777664
No 233
>PLN02929 NADH kinase
Probab=56.39 E-value=31 Score=30.89 Aligned_cols=58 Identities=12% Similarity=0.270 Sum_probs=37.6
Q ss_pred cCccccceeeccchhhHHHHHH---cCCceeeecccC------cccc---cccc-CC---CCcHHHHHHHHHHHhc
Q 016062 336 AHSAVGGFWTHCGWNSILESIS---EGVPMICRSAFG------DQKV---NASR-KG---GSSYNLLNELVDHIMS 395 (396)
Q Consensus 336 ~~~~~~~~ItHGG~~s~~eal~---~GvP~v~~P~~~------DQ~~---na~~-~~---~~~~~~l~~~~~~il~ 395 (396)
..+++ +|+-||-||+..|.+ .++|++++-... +++. +++. .| ..+..++.++++++++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHc
Confidence 44567 999999999999965 478999886642 1111 2221 11 2345777788887763
No 234
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=56.35 E-value=1.9e+02 Score=27.75 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=59.1
Q ss_pred EEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchH
Q 016062 11 VVLVP-IPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRA 89 (396)
Q Consensus 11 il~~~-~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (396)
|++.. ..+-|-..-...|++.|+++|++|..+-+...... +. +...-.+.+.. .-+. ++ .-..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D----~~--~~~~~~g~~~~---~ld~--~~-----~~~~ 65 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYID----PM--FHTQATGRPSR---NLDS--FF-----MSEA 65 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCC----HH--HHHHHhCCchh---hCCc--cc-----CCHH
Confidence 34443 33457888999999999999999999876321100 00 00000000000 0000 00 0122
Q ss_pred HHHHHHHHHHhcCCCcCEEEeCCch------------hHHHHHHHHhCCCeEEEeCchH
Q 016062 90 PLQEALTRMIAKQEDLPCVIHDGIM------------HCAEAVARHLKLPSIILYTLNP 136 (396)
Q Consensus 90 ~l~~~~~~l~~~~~~~D~vI~D~~~------------~~~~~~A~~lgiP~v~~~~~~~ 136 (396)
.+.+.++++.+ +.|++|++... .....+|+.++.|.|.+.....
T Consensus 66 ~i~~~~~~~~~---~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 66 QIQECFHRHSK---GTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred HHHHHHHHhcc---cCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 33334444422 58999977541 1256899999999999987653
No 235
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=56.26 E-value=48 Score=29.51 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCC
Q 016062 26 LQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 26 l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
.++|..++++|++|.+++.++..
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 47889999999999999986554
No 236
>PRK14098 glycogen synthase; Provisional
Probab=55.90 E-value=22 Score=34.53 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=29.5
Q ss_pred CcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 8 CRQVVLVPIP------LQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 8 ~~~il~~~~~------~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
.+||++++.- .-|=-.-+-+|.++|+++||+|.++.|..
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4788888732 22444557889999999999999999943
No 237
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=55.89 E-value=11 Score=32.62 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 21 HITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 21 H~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
=-.-+-.|+++|+++||+|+++.|..
T Consensus 18 Lgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 18 LGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 34457889999999999999999953
No 238
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=55.77 E-value=19 Score=31.59 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=22.3
Q ss_pred eEEEEEcCccccC-CHHHHHHHHHHHHh--CCCCeEEEECCC
Q 016062 262 SVIYVSFGSIALT-GEKELAEMAWGLAN--SKQPFLWVLRPG 300 (396)
Q Consensus 262 ~vv~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~ 300 (396)
.++++||||.... ...-+..+.+.+++ .+..+-|++...
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 5778888887663 34467777777766 366777776654
No 239
>PRK07952 DNA replication protein DnaC; Validated
Probab=55.66 E-value=68 Score=27.82 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAH 43 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~ 43 (396)
-+++.-.+|.|=..-+.+||.+|.++|+.|.+++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4667777788888888899999999999988874
No 240
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=55.51 E-value=72 Score=25.61 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=23.3
Q ss_pred Cccccceeeccch------hhHHHHHHcCCceeeecc
Q 016062 337 HSAVGGFWTHCGW------NSILESISEGVPMICRSA 367 (396)
Q Consensus 337 ~~~~~~~ItHGG~------~s~~eal~~GvP~v~~P~ 367 (396)
++.+ +++|.|- +.+.+|...++|||++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 4444 8888874 478999999999999964
No 241
>PRK05748 replicative DNA helicase; Provisional
Probab=55.34 E-value=46 Score=31.87 Aligned_cols=41 Identities=7% Similarity=0.182 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~~ 48 (396)
+.-+++...|+.|=-.-.+.+|...+. .|+.|.+++.+...
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA 244 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 345777788899999999999999875 59999999986544
No 242
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.11 E-value=71 Score=29.68 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
-|.|+-.-+.|-...+-.+|..+.++|+.+.+++.+.++
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 455555667799999999999999999999999987665
No 243
>PRK05920 aromatic acid decarboxylase; Validated
Probab=54.87 E-value=20 Score=30.11 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+||++.-.++ +...=...+.++|.+.||+|.++.++..
T Consensus 4 krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A 41 (204)
T PRK05920 4 KRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAA 41 (204)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 5677776666 4557889999999999999999998543
No 244
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=54.41 E-value=25 Score=29.77 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=36.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+.+|++.+.++-.|-....-++..|..+|++|+++......
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~ 128 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPI 128 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 57899999999999999999999999999999999875433
No 245
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=54.39 E-value=41 Score=32.00 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
.||||++-.+++-| +|+++|++.++-..+++.+.+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 58999999999877 689999998865455444344
No 246
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=54.32 E-value=1.5e+02 Score=26.00 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=28.5
Q ss_pred eecCccccccCccccceeeccc-hhhHHHHHHcCCceeee
Q 016062 327 NWAPQRQVLAHSAVGGFWTHCG-WNSILESISEGVPMICR 365 (396)
Q Consensus 327 ~~vp~~~lL~~~~~~~~ItHGG-~~s~~eal~~GvP~v~~ 365 (396)
++=|+.++|+.++. +|.-.. .|-..||.+.|+|+.+.
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 44588999977665 665554 67788999999999874
No 247
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.32 E-value=46 Score=30.32 Aligned_cols=124 Identities=11% Similarity=-0.012 Sum_probs=75.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC--CCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS--PHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINL 85 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~--~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
++|++++..+--||--.|.-=|..|++.|.+|.++.-.... +...+.+.++++.++.---. .....-+....+.+..
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~~~-~~~p~~~~l~lKvf~Q 90 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLPFL-QGGPRVLFLPLKVFWQ 90 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCccc-CCCchhhhhHHHHHHH
Confidence 78899999998899999999999999999999999875543 33345689999999843211 1111111111222211
Q ss_pred HchHHHHHHHHHHHhcCCCcCEEEeCCc-hhHHHHHH----HHhCCCeEEEeCchHHH
Q 016062 86 NCRAPLQEALTRMIAKQEDLPCVIHDGI-MHCAEAVA----RHLKLPSIILYTLNPTN 138 (396)
Q Consensus 86 ~~~~~l~~~~~~l~~~~~~~D~vI~D~~-~~~~~~~A----~~lgiP~v~~~~~~~~~ 138 (396)
.+ .++-.+.... ++|.+++-+- +.....++ .-.|..+++=|+.-.+.
T Consensus 91 ----fl-~Ll~aL~~~~-~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 91 ----FL-SLLWALFVLR-PPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred ----HH-HHHHHHHhcc-CCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 11 1222222222 7898887652 23333333 45577888877775553
No 248
>PRK05636 replicative DNA helicase; Provisional
Probab=54.11 E-value=38 Score=32.98 Aligned_cols=122 Identities=14% Similarity=0.212 Sum_probs=68.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCCCCC-----CCCCCCceEEeCCCCCCCCCCCCCCHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFNSPH-----ASNHPDFTFLPLSDGSSSTPKASDDFIDFMS 81 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~~~~-----~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (396)
+.-|++...|+.|--.-.+.+|...+. .|..|.+++.+-.... .....+++...+-.+ .-...++..+..
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g----~l~~~e~~~~~~ 340 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGG----KMDEDAWEKLVQ 340 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcC----CCCHHHHHHHHH
Confidence 345677778899999999999988764 5889999988654322 112233333222211 000112222111
Q ss_pred HHHHH-------------chHHHHHHHHHHHhcCCCcCEEEeCCchhHH-------------------HHHHHHhCCCeE
Q 016062 82 NINLN-------------CRAPLQEALTRMIAKQEDLPCVIHDGIMHCA-------------------EAVARHLKLPSI 129 (396)
Q Consensus 82 ~~~~~-------------~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~-------------------~~~A~~lgiP~v 129 (396)
..... .-..++..+++++... +.|+||+|++..-. -.+|+.++||.|
T Consensus 341 a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~-~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi 419 (505)
T PRK05636 341 RLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKH-DLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLI 419 (505)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 11110 1123334445554443 68999999864211 138899999999
Q ss_pred EEeCc
Q 016062 130 ILYTL 134 (396)
Q Consensus 130 ~~~~~ 134 (396)
.++.-
T Consensus 420 ~lsQL 424 (505)
T PRK05636 420 AISQL 424 (505)
T ss_pred EEeec
Confidence 98654
No 249
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=53.85 E-value=1e+02 Score=28.11 Aligned_cols=34 Identities=15% Similarity=0.377 Sum_probs=30.0
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 14 VPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 14 ~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
++.+|.|-.--...|++.|.++|++|.+++-...
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 4578889999999999999999999999998543
No 250
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=53.58 E-value=1.7e+02 Score=26.42 Aligned_cols=126 Identities=12% Similarity=-0.023 Sum_probs=71.0
Q ss_pred CeEE-EEEcCcccc--CCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEe--ecCc-ccc
Q 016062 261 HSVI-YVSFGSIAL--TGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVN--WAPQ-RQV 334 (396)
Q Consensus 261 ~~vv-~vs~Gs~~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~--~vp~-~~l 334 (396)
++.| ++-.||... .+.+.+.++++.+.+.+.++++..++.. +. + .-+.+.+.. .++.+.+ -+.+ .++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~-e~-~----~~~~i~~~~-~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH-EE-Q----RAKRLAEGF-PYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH-HH-H----HHHHHHccC-CcceecCCCCHHHHHHH
Confidence 3444 444444432 6778888888888766676554434321 00 0 111111111 1233332 2344 448
Q ss_pred ccCccccceeeccchhhHHHHHHcCCceeeecccCcccccc------c-------cCCCCcHHHHHHHHHHHhcC
Q 016062 335 LAHSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQKVNA------S-------RKGGSSYNLLNELVDHIMSV 396 (396)
Q Consensus 335 L~~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ~~na------~-------~~~~~~~~~l~~~~~~il~~ 396 (396)
+.++++ +|+.- .|.++=|.+.|+|+|++=--.+...++ . --...+.+..-+.++++||+
T Consensus 251 i~~a~l--~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~~~cm~~I~~e~V~~~~~~~l~~ 322 (322)
T PRK10964 251 LAGAKA--VVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSPGKSMADLSAETVFQKLETLISL 322 (322)
T ss_pred HHhCCE--EEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCCCcccccCCHHHHHHHHHHHhhC
Confidence 888888 99864 578999999999999863322221111 1 23356777888888888874
No 251
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=53.28 E-value=28 Score=30.40 Aligned_cols=98 Identities=10% Similarity=0.048 Sum_probs=53.9
Q ss_pred CCHHH----HHHHHHHHHhC--CCeEEEEeCCCCCCC----CC--CCCCce-EEeCCCCCCCCCCCCCCHHHHHHHHHHH
Q 016062 20 GHITP----MLQLGTILHSR--GFSITVAHAQFNSPH----AS--NHPDFT-FLPLSDGSSSTPKASDDFIDFMSNINLN 86 (396)
Q Consensus 20 GH~~p----~l~la~~L~~r--GH~Vt~~~~~~~~~~----~~--~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (396)
.-+|| .+..|-+|+++ |.+||.++-.+.... .. -..|.. .+.+.+.... ..+.. .
T Consensus 32 ~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~----g~D~~--------~ 99 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFE----QALPQ--------Q 99 (256)
T ss_pred cccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCccc----CcCHH--------H
Confidence 34666 46667777776 379999997543311 11 012332 2223221100 11211 1
Q ss_pred chHHHHHHHHHHHhcCCCcCEEEeCCch------hHHHHHHHHhCCCeEEEeCc
Q 016062 87 CRAPLQEALTRMIAKQEDLPCVIHDGIM------HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 87 ~~~~l~~~~~~l~~~~~~~D~vI~D~~~------~~~~~~A~~lgiP~v~~~~~ 134 (396)
....+...++++ +||+|++-..+ .-+..+|+.||+|++.+...
T Consensus 100 tA~~La~ai~~~-----~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 100 TASALAAAAQKA-----GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHHHh-----CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 123334455554 69999975433 34678999999999998665
No 252
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=53.26 E-value=31 Score=33.22 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=42.9
Q ss_pred EeecCccc---cccCccccceee---ccchh-hHHHHHHcCCc---eeeecc---cCccccccccCCCCcHHHHHHHHHH
Q 016062 326 VNWAPQRQ---VLAHSAVGGFWT---HCGWN-SILESISEGVP---MICRSA---FGDQKVNASRKGGSSYNLLNELVDH 392 (396)
Q Consensus 326 ~~~vp~~~---lL~~~~~~~~It---HGG~~-s~~eal~~GvP---~v~~P~---~~DQ~~na~~~~~~~~~~l~~~~~~ 392 (396)
.+++++.+ +++.+++ ||. .-|+| ++.||+++|+| +|++.. ..++..|+---+..+..++.++|.+
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~~~~g~lv~p~d~~~la~ai~~ 423 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEELSGALLVNPYDIDEVADAIHR 423 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchhhcCCCEEECCCCHHHHHHHHHH
Confidence 35677654 5788888 663 44544 77999999999 444443 2344444443334456777777777
Q ss_pred Hhc
Q 016062 393 IMS 395 (396)
Q Consensus 393 il~ 395 (396)
+++
T Consensus 424 ~l~ 426 (460)
T cd03788 424 ALT 426 (460)
T ss_pred HHc
Confidence 764
No 253
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=53.15 E-value=1.4e+02 Score=25.19 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=27.1
Q ss_pred EEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 11 VVLVP-IPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 11 il~~~-~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|.+.. ....|-..-.+.|++.|+++|++|.++-+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 34443 34568999999999999999999988765
No 254
>PRK09165 replicative DNA helicase; Provisional
Probab=53.09 E-value=67 Score=31.28 Aligned_cols=121 Identities=16% Similarity=0.222 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCCC-----CCCCCceEEeCCCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSR---------------GFSITVAHAQFNSPHA-----SNHPDFTFLPLSDGSSS 68 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~r---------------GH~Vt~~~~~~~~~~~-----~~~~gi~~~~~~~~~~~ 68 (396)
.-+++...|+.|--.-++.+|...+.+ |..|.+++.+...... ....++....+..+
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~--- 294 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRG--- 294 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcC---
Confidence 346777788999999999999888754 7889999986554222 12234433222211
Q ss_pred CCCCCCCHHHHHHHHHHH-------------chHHHHHHHHHHHhcCCCcCEEEeCCchhH-------------------
Q 016062 69 TPKASDDFIDFMSNINLN-------------CRAPLQEALTRMIAKQEDLPCVIHDGIMHC------------------- 116 (396)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~------------------- 116 (396)
.-...++..+....... .-..++..+++++... ++|+||+|++..-
T Consensus 295 -~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~-~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is 372 (497)
T PRK09165 295 -KISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQH-GLDLLVVDYLQLIRGSSKRSSDNRVQEISEIT 372 (497)
T ss_pred -CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhc-CCCEEEEcchHhccCCCCCCCCchHHHHHHHH
Confidence 00111222222211111 1223334445554443 6999999986410
Q ss_pred --HHHHHHHhCCCeEEEeCc
Q 016062 117 --AEAVARHLKLPSIILYTL 134 (396)
Q Consensus 117 --~~~~A~~lgiP~v~~~~~ 134 (396)
.-.+|+.++||.+.++.-
T Consensus 373 ~~LK~lAkel~ipVi~lsQL 392 (497)
T PRK09165 373 QGLKALAKELNIPVIALSQL 392 (497)
T ss_pred HHHHHHHHHhCCeEEEeecc
Confidence 124678899999998654
No 255
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.99 E-value=29 Score=30.75 Aligned_cols=51 Identities=8% Similarity=-0.030 Sum_probs=34.0
Q ss_pred CccccceeeccchhhHHHHHH---cCCceeeecccCccccccccCCCCcHHHHHHHHHHHh
Q 016062 337 HSAVGGFWTHCGWNSILESIS---EGVPMICRSAFGDQKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 337 ~~~~~~~ItHGG~~s~~eal~---~GvP~v~~P~~~DQ~~na~~~~~~~~~~l~~~~~~il 394 (396)
..++ +|.-||-||+.+++. .++|+++++...--+.. .....++.+++++++
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~lGFl~-----~~~~~~~~~~l~~i~ 110 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGTLGFLT-----EVEPEETFFALSRLL 110 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCCCCccc-----cCCHHHHHHHHHHHH
Confidence 4566 999999999999984 35699999874322221 123455666666654
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=52.53 E-value=29 Score=30.31 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
+..++++-.+|.|-..-..+||.+|.++|+.|+|++.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45789999999998888999999999889999999883
No 257
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=52.35 E-value=33 Score=27.30 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCCCHHH-HHHHHHHHHhC--CCeEEEEeCC
Q 016062 8 CRQVVLVPIPLQGHITP-MLQLGTILHSR--GFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p-~l~la~~L~~r--GH~Vt~~~~~ 45 (396)
++||+..-.++ ||..+ ..++.++|.++ +|+|+.+...
T Consensus 8 ~~rIaWgITGa-G~~L~Et~~imk~lk~~~~~~~v~v~lSk 47 (187)
T COG1036 8 KKRIAWGITGA-GHLLPETYQIMKELKKEYGDVEVDVFLSK 47 (187)
T ss_pred cceEEEEEecc-ccccHHHHHHHHHHHhhcCCceEEEeehh
Confidence 56788766665 89888 88999999998 7999998874
No 258
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=52.31 E-value=45 Score=30.62 Aligned_cols=96 Identities=10% Similarity=0.036 Sum_probs=58.2
Q ss_pred CCeEEEEEcCccc--c--CCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcC----Cc-EEEee--
Q 016062 260 QHSVIYVSFGSIA--L--TGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEK----RG-CIVNW-- 328 (396)
Q Consensus 260 ~~~vv~vs~Gs~~--~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~----~~-~~~~~-- 328 (396)
+++.|.+..|+.. . .+.+.+.++++.+.+.+.++++. ++.. + ...-+.+....+. ++ .+.+-
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~--e----~~~~~~i~~~~~~~~~~~~~~l~g~~s 251 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAK--D----HEAGNEILAALNTEQQAWCRNLAGETQ 251 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHH--h----HHHHHHHHHhcccccccceeeccCCCC
Confidence 5677888888742 2 67888888888887667776554 3321 0 0011222222221 11 22222
Q ss_pred cCc-cccccCccccceeeccchhhHHHHHHcCCceeee
Q 016062 329 APQ-RQVLAHSAVGGFWTHCGWNSILESISEGVPMICR 365 (396)
Q Consensus 329 vp~-~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~ 365 (396)
+.+ .++++++++ +|+. -.|-++=|.+.|+|+|.+
T Consensus 252 L~el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 252 LEQAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 334 348888887 8885 467899999999999975
No 259
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.27 E-value=1.3e+02 Score=26.96 Aligned_cols=52 Identities=12% Similarity=0.032 Sum_probs=35.5
Q ss_pred cCccccceeeccchhhHHHHHHc----CCceeeecccCccccccccCCCCcHHHHHHHHHHHh
Q 016062 336 AHSAVGGFWTHCGWNSILESISE----GVPMICRSAFGDQKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 336 ~~~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~~~~l~~~~~~il 394 (396)
..+++ +|+=||-||+.++++. ++|++++....=-+.. .....++.+++++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G~lGFl~-----~~~~~~~~~~l~~~~ 116 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRGRLGFLT-----DIRPDELEFKLAEVL 116 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCCcccccc-----cCCHHHHHHHHHHHH
Confidence 34666 9999999999999763 7799988874322221 234466666776665
No 260
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=52.18 E-value=1.1e+02 Score=29.05 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=24.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 15 PIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 15 ~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+..+.|-..-.+.|.++|++||++|.=+-.
T Consensus 8 ~~SG~GKTTvT~glm~aL~~rg~~VqpfKv 37 (451)
T COG1797 8 TSSGSGKTTVTLGLMRALRRRGLKVQPFKV 37 (451)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCccccccc
Confidence 344668999999999999999999865443
No 261
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=52.06 E-value=42 Score=28.89 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=23.6
Q ss_pred CcCEEE-eCCch-hHHHHHHHHhCCCeEEEeCc
Q 016062 104 DLPCVI-HDGIM-HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 104 ~~D~vI-~D~~~-~~~~~~A~~lgiP~v~~~~~ 134 (396)
-||+++ +|+.. --|..=|.++|||.|.+.-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 499876 56554 44677899999999998655
No 262
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=51.61 E-value=87 Score=30.10 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=21.2
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
+||++|.... ...+|+++|||++.+.
T Consensus 395 ~pDl~ig~~~---~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 395 KADLLIAGGK---ERYTALKLGIPFCDIN 420 (456)
T ss_pred CCCEEEEccc---hHHHHHhcCCCEEEcc
Confidence 7999998743 5678899999998753
No 263
>PRK13768 GTPase; Provisional
Probab=51.27 E-value=57 Score=28.45 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
.+++...++.|--.-...++..|..+|++|.++...+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4666667788888889999999999999999987654
No 264
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=51.02 E-value=1.9e+02 Score=27.29 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=21.1
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEE
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIIL 131 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (396)
+||++|.... ...+|+++|+|++..
T Consensus 356 ~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 356 KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 7999999965 467999999999854
No 265
>PRK00784 cobyric acid synthase; Provisional
Probab=50.82 E-value=1.6e+02 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=27.8
Q ss_pred EEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 11 VVLVPIP-LQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 11 il~~~~~-~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|++.... .-|-..-...|++.|+++|++|..+-+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 5555443 458999999999999999999998766
No 266
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=50.51 E-value=26 Score=28.66 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=25.0
Q ss_pred HHHHHhcCCCcCEEEeCCchhH--HHHHHHHhCCCeEEEeC
Q 016062 95 LTRMIAKQEDLPCVIHDGIMHC--AEAVARHLKLPSIILYT 133 (396)
Q Consensus 95 ~~~l~~~~~~~D~vI~D~~~~~--~~~~A~~lgiP~v~~~~ 133 (396)
++++... +||+||....... ....-++.|||++.+..
T Consensus 62 ~E~ll~l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 62 VELIVAL--KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred HHHHhcc--CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 4555444 8999998654322 34556789999988853
No 267
>PLN02470 acetolactate synthase
Probab=49.78 E-value=29 Score=34.56 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=52.4
Q ss_pred EcCcccc--CCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeec-Ccccc-------cc
Q 016062 267 SFGSIAL--TGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWA-PQRQV-------LA 336 (396)
Q Consensus 267 s~Gs~~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~v-p~~~l-------L~ 336 (396)
+|||... ......+.+++.|++.+.+.++-+.+..... +-+.+. ..++++.+.-- .+.+. ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~------l~dal~--~~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASME------IHQALT--RSNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHH------HHHHHh--ccCCceEEEeccHHHHHHHHHHHHHH
Confidence 4566554 2334467788888888888888876653111 112221 01123332111 11111 11
Q ss_pred Cccccceeeccch------hhHHHHHHcCCceeeecc
Q 016062 337 HSAVGGFWTHCGW------NSILESISEGVPMICRSA 367 (396)
Q Consensus 337 ~~~~~~~ItHGG~------~s~~eal~~GvP~v~~P~ 367 (396)
..+++++++|.|- +.+.+|...++|||++.-
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 2234458888884 488999999999999964
No 268
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=49.67 E-value=75 Score=29.21 Aligned_cols=98 Identities=9% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCeEEEEEcCcccc---CCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhc-CC-cEEEee--cCc-
Q 016062 260 QHSVIYVSFGSIAL---TGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVE-KR-GCIVNW--APQ- 331 (396)
Q Consensus 260 ~~~vv~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~-~~~~~~--vp~- 331 (396)
+++.|.+..|+... .+.+.+.++++.+.+.+.++++..+.+..+. ..-+.+.+... .+ +.+.+- +.+
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~-----~~~~~i~~~~~~~~~~~l~g~~sL~el 256 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDL-----ACVNEIAQGCQTPPVTALAGKTTFPEL 256 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHH-----HHHHHHHHhcCCCccccccCCCCHHHH
Confidence 35677778887533 6778888889888777777665533321000 00011111111 11 222222 344
Q ss_pred cccccCccccceeeccchhhHHHHHHcCCceeee
Q 016062 332 RQVLAHSAVGGFWTHCGWNSILESISEGVPMICR 365 (396)
Q Consensus 332 ~~lL~~~~~~~~ItHGG~~s~~eal~~GvP~v~~ 365 (396)
.++++++++ ||++ -.|-++=|.+.|+|+|.+
T Consensus 257 ~ali~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 257 GALIDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 458888888 9986 457788899999999876
No 269
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.11 E-value=24 Score=28.76 Aligned_cols=110 Identities=11% Similarity=0.210 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCC----------CCC---------CCCCCHHHH
Q 016062 20 GHITPMLQLGTIL-HSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSS----------STP---------KASDDFIDF 79 (396)
Q Consensus 20 GH~~p~l~la~~L-~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~----------~~~---------~~~~~~~~~ 79 (396)
+.+.-.+..|++| .+.|.+|.+... .......+..++..+.++-... ... ....++..+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~ 95 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESI 95 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHH
Confidence 5677788999999 889999888776 3433332223556666651110 000 111222222
Q ss_pred HHHHHH-------HchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCch
Q 016062 80 MSNINL-------NCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 80 ~~~~~~-------~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 135 (396)
-..+.- .....+...++++... +.|+||-+.. +..+|+++|+|++.+.++.
T Consensus 96 ~~ll~~~i~~~~~~~~~e~~~~i~~~~~~--G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 96 EELLGVDIKIYPYDSEEEIEAAIKQAKAE--GVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHT-EEEEEEESSHHHHHHHHHHHHHT--T--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred HHHhCCceEEEEECCHHHHHHHHHHHHHc--CCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 222111 1144566677777766 6999999964 5789999999999987753
No 270
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=49.08 E-value=16 Score=31.66 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=23.9
Q ss_pred ccccceeeccchhhHHHHHHc----CCceeeeccc
Q 016062 338 SAVGGFWTHCGWNSILESISE----GVPMICRSAF 368 (396)
Q Consensus 338 ~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~~ 368 (396)
+++ +|+-||=||+..|++. ++|++++-..
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~G 58 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNRG 58 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeCC
Confidence 566 9999999999988765 6898887663
No 271
>PRK14099 glycogen synthase; Provisional
Probab=49.02 E-value=31 Score=33.45 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=29.7
Q ss_pred CcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIP------LQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~------~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
++||++++.- .-|=-.-+-+|.++|+++||+|.++.|.
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5889998732 2244456788999999999999999994
No 272
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.91 E-value=1.6e+02 Score=26.03 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+.+++++-..+.|--.-+..|+..+..+|+.|.+++....
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 3688888888889888899999999999999999988544
No 273
>PRK07206 hypothetical protein; Provisional
Probab=48.84 E-value=76 Score=29.95 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=23.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
+|+++-..+. ...++++++++|++++.+....
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 4777765433 3568999999999988888743
No 274
>PRK08840 replicative DNA helicase; Provisional
Probab=48.68 E-value=1.3e+02 Score=29.07 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~~ 48 (396)
+.-+++..-|+.|--.-.+.+|...+. .|+.|.|++.+-..
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA 258 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 345677778899999999999999875 59999999986443
No 275
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=48.63 E-value=26 Score=31.71 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
.+||+++-.++.| ..+|..|++.||+|+++....
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 4789999777665 457888999999999998743
No 276
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=48.58 E-value=94 Score=28.24 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
++|.++-.+++| -+||..|++.||+|++-...
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 468888888876 58999999999999998875
No 277
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=48.29 E-value=61 Score=30.85 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~~ 48 (396)
.-+++...|+.|=-.-++.+|..++. .|+.|.+++.+...
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 35677778899999999999999886 59999999986544
No 278
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=48.13 E-value=65 Score=25.92 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHh-CCCeEEEEe
Q 016062 21 HITPMLQLGTILHS-RGFSITVAH 43 (396)
Q Consensus 21 H~~p~l~la~~L~~-rGH~Vt~~~ 43 (396)
|.....+|+++|.+ +|+++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 78889999999988 565544443
No 279
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=47.90 E-value=35 Score=28.95 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=31.1
Q ss_pred EEEEcCC--CCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 11 VVLVPIP--LQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 11 il~~~~~--~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
|.+++.+ +-|-......|+-.|+++|+.|.++=..-..
T Consensus 4 iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGL 43 (272)
T COG2894 4 IIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGL 43 (272)
T ss_pred EEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCc
Confidence 6666655 5589999999999999999999998775433
No 280
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=47.68 E-value=28 Score=31.36 Aligned_cols=39 Identities=15% Similarity=0.111 Sum_probs=31.4
Q ss_pred EEEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 10 QVVLVP-IPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 10 ~il~~~-~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
|++|+. -+|-|-..-..++|-.++++|++|.++++++..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 455555 556699999999999999999999999997655
No 281
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.35 E-value=40 Score=26.09 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=41.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC---CCCCceEEeCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS---NHPDFTFLPLS 63 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~---~~~gi~~~~~~ 63 (396)
++|++-+..+-+|-.----++..|...|++|+.+...-..+.+. ...+..++.++
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 57999999999999999999999999999999988744332221 11355555554
No 282
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=47.27 E-value=2e+02 Score=30.68 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHc
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNC 87 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (396)
++|++++..+. -...+++.|.+.|-+|+.++....... ....+. .+. .++.. -..
T Consensus 320 GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~--d~~~~~--~~~---~~~~~-------------vi~ 374 (917)
T PRK14477 320 GKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLE--DFARMK--ALM---HKDAH-------------IIE 374 (917)
T ss_pred CCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHH--HHHHHH--Hhc---CCCCE-------------EEE
Confidence 68899987553 256688889999999977554211100 000000 000 00000 000
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
.....++.+.+.+. +||++|.... ...+|+++|||++...
T Consensus 375 ~~d~~el~~~i~~~--~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 375 DTSTAGLLRVMREK--MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred CCCHHHHHHHHHhc--CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 01112222222222 7999999765 5679999999999754
No 283
>PRK03094 hypothetical protein; Provisional
Probab=46.89 E-value=19 Score=24.90 Aligned_cols=20 Identities=10% Similarity=0.400 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 016062 25 MLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~ 44 (396)
+..|.+.|+++||+|+=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45799999999999987765
No 284
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=46.85 E-value=18 Score=30.82 Aligned_cols=25 Identities=16% Similarity=0.382 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 21 HITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 21 H~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
|+..|...|++|.++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999884
No 285
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=46.68 E-value=33 Score=30.46 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=52.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhh
Q 016062 272 ALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNS 351 (396)
Q Consensus 272 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s 351 (396)
+..+....+.+.+|+.+.+.+.||...++.+.. ++..+++...+-++|+. ||=..-..+
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-------------------rlL~~ld~~~~~~~pK~--~iGySDiTa 102 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYGAN-------------------RLLPYLDYDLIRANPKI--FVGYSDITA 102 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH-------------------HhhhhCCHHHHhhCCeE--EEEecHHHH
Confidence 334667788899999999999999998874222 34455555555567766 777777777
Q ss_pred HHHHHHc--CCceeeecccC
Q 016062 352 ILESISE--GVPMICRSAFG 369 (396)
Q Consensus 352 ~~eal~~--GvP~v~~P~~~ 369 (396)
++-+++. |++.+-=|...
T Consensus 103 L~~~l~~~~g~~t~hGp~~~ 122 (282)
T cd07025 103 LHLALYAKTGLVTFHGPMLA 122 (282)
T ss_pred HHHHHHHhcCceEEECcccc
Confidence 7777764 56555555443
No 286
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.66 E-value=48 Score=29.88 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=35.2
Q ss_pred cccCccccceeeccchhhHHHHHHc----CCceeeecccCccccccccCCCCcHHHHHHHHHHHh
Q 016062 334 VLAHSAVGGFWTHCGWNSILESISE----GVPMICRSAFGDQKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~~~~l~~~~~~il 394 (396)
+.+.+++ +|+=||=||+..|.+. ++|++++....=-+.. .....++.+++++|+
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G~lGFL~-----~~~~~~~~~~l~~i~ 126 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLGHVGFLA-----EAEAEDLDEAVERVV 126 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecCCCceec-----cCCHHHHHHHHHHHH
Confidence 3445677 9999999999999764 8899998873222211 122355555665554
No 287
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=46.22 E-value=2.5e+02 Score=27.31 Aligned_cols=40 Identities=3% Similarity=-0.156 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
--+++.-.|+.|--.-.+.++.+.+++|..|.+++.++..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESR 303 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCH
Confidence 3567777889999999999999999999999999997665
No 288
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=45.90 E-value=22 Score=29.15 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=26.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
|++...++.|-.. ...+.++|+++|++|.++.++...
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~ 38 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAK 38 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHH
Confidence 4555555544444 488999999999999999995443
No 289
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=45.79 E-value=20 Score=32.08 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=25.6
Q ss_pred cccCccccceeeccchhhHHHHHHc----CCceeeecc
Q 016062 334 VLAHSAVGGFWTHCGWNSILESISE----GVPMICRSA 367 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~ 367 (396)
+-..+++ +|+-||-||+.+|++. ++|++++-.
T Consensus 60 ~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~ 95 (291)
T PRK02155 60 IGARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH 95 (291)
T ss_pred hccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 3345677 9999999999999874 678888765
No 290
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=45.71 E-value=48 Score=26.50 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.6
Q ss_pred EEEEEcCccccCCHHHHHHHHHHHHhCCC
Q 016062 263 VIYVSFGSIALTGEKELAEMAWGLANSKQ 291 (396)
Q Consensus 263 vv~vs~Gs~~~~~~~~~~~~~~al~~~~~ 291 (396)
.+|+|+||--......++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 59999999888777888889999988764
No 291
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=45.48 E-value=57 Score=24.44 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
||++..-++.|--.....+++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888899999999999999999999999888754
No 292
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=45.44 E-value=41 Score=30.70 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=55.6
Q ss_pred cEEEEEcCCCCC-----CHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC-CCceEEeCCCCCCCCCCCCCCHHHHHHH
Q 016062 9 RQVVLVPIPLQG-----HITPMLQLGTILHSRGFSITVAHAQFNSPHASNH-PDFTFLPLSDGSSSTPKASDDFIDFMSN 82 (396)
Q Consensus 9 ~~il~~~~~~~G-----H~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
..|++.|..+.| -..-+..|++.|.++|.+|+++.++...+..... .++.... .
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~-----~--------------- 235 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAV-----I--------------- 235 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCcc-----c---------------
Confidence 567777773442 2335899999999999888888775221111000 0000000 0
Q ss_pred HHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCc
Q 016062 83 INLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 83 ~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 134 (396)
-.....+.++..-+. ..|++|+-.. +...+|..+|.|+|.+...
T Consensus 236 --l~~k~sL~e~~~li~----~a~l~I~~DS--g~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 236 --LAGKTSLEELAALIA----GADLVIGNDS--GPMHLAAALGTPTIALYGP 279 (334)
T ss_pred --cCCCCCHHHHHHHHh----cCCEEEccCC--hHHHHHHHcCCCEEEEECC
Confidence 011112222222222 5799887654 3678999999999998755
No 293
>PRK04940 hypothetical protein; Provisional
Probab=45.44 E-value=76 Score=26.03 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=27.5
Q ss_pred CcCEEEeCCch-hHHHHHHHHhCCCeEEEeCch
Q 016062 104 DLPCVIHDGIM-HCAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 104 ~~D~vI~D~~~-~~~~~~A~~lgiP~v~~~~~~ 135 (396)
+++++|-.++. ++|.-+|++.|+|.|.+-|+-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 46888888877 899999999999999997773
No 294
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=45.19 E-value=24 Score=27.15 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 20 GHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 20 GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
..+--.+-++..|.++||+|++.+++..
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA 38 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAA 38 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHH
Confidence 4555688899999999999999998543
No 295
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=44.97 E-value=37 Score=30.49 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=35.7
Q ss_pred cccCccccceeeccchhhHHHHHH----cCCceeeecccCccccccc
Q 016062 334 VLAHSAVGGFWTHCGWNSILESIS----EGVPMICRSAFGDQKVNAS 376 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~ 376 (396)
.|+.-++.++|.=||.+|+.-|.. +++|+|++|-+.|-....-
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~t 132 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGT 132 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCc
Confidence 456667888999999999977753 7999999999999877654
No 296
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=44.86 E-value=2.1e+02 Score=24.78 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=33.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCC-CeEEEEeCCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRG-FSITVAHAQFNSP 49 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rG-H~Vt~~~~~~~~~ 49 (396)
++|++.-=++.|-..-..-|+.+|.++| ++|..+=.+++..
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~n 42 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSN 42 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 4788888889898877777788888886 9999998876543
No 297
>PRK08265 short chain dehydrogenase; Provisional
Probab=44.79 E-value=45 Score=28.99 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+.++++..+. .--.+++++|+++|++|++..-
T Consensus 7 k~vlItGas~---gIG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGAT---LIGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCCC---hHHHHHHHHHHHCCCEEEEEeC
Confidence 4666665553 2567899999999999988765
No 298
>PRK07236 hypothetical protein; Provisional
Probab=44.70 E-value=44 Score=31.14 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=30.0
Q ss_pred CccCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 1 MEKQGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 1 ~~~m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
|.+|.. .+|+|+-.+- --+.+|..|+++|++|+++-..
T Consensus 1 ~~~~~~--~~ViIVGaG~-----aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 1 MTHMSG--PRAVVIGGSL-----GGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCC--CeEEEECCCH-----HHHHHHHHHHhCCCCEEEEecC
Confidence 667766 6788886653 3588999999999999999864
No 299
>PRK07773 replicative DNA helicase; Validated
Probab=44.56 E-value=69 Score=33.82 Aligned_cols=122 Identities=14% Similarity=0.248 Sum_probs=69.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEEEeCCCCCCCC-----CCCCCceEEeCCCCCCCCCCCCCCHHHHHHH
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSR-GFSITVAHAQFNSPHA-----SNHPDFTFLPLSDGSSSTPKASDDFIDFMSN 82 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~r-GH~Vt~~~~~~~~~~~-----~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
.-|++..-|+.|--.-.+.+|...+.+ |..|.+++-+...... ....+++...+..+- -...++......
T Consensus 218 ~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~g~----l~~~~~~~~~~a 293 (886)
T PRK07773 218 QLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRSGR----MSDDDWTRLARA 293 (886)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCC----CCHHHHHHHHHH
Confidence 357777888999999999999998865 7889999986544221 111333332221110 000111111111
Q ss_pred HHHH-------------chHHHHHHHHHHHhcCCCcCEEEeCCchhH-------------------HHHHHHHhCCCeEE
Q 016062 83 INLN-------------CRAPLQEALTRMIAKQEDLPCVIHDGIMHC-------------------AEAVARHLKLPSII 130 (396)
Q Consensus 83 ~~~~-------------~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~-------------------~~~~A~~lgiP~v~ 130 (396)
.... .-..++..+++++... +.|+||+|++..- .-.+|+.++||.+.
T Consensus 294 ~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~-~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~ 372 (886)
T PRK07773 294 MGEISEAPIFIDDTPNLTVMEIRAKARRLRQEA-NLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVA 372 (886)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEE
Confidence 1110 1123333344444433 6999999986421 12478899999999
Q ss_pred EeCch
Q 016062 131 LYTLN 135 (396)
Q Consensus 131 ~~~~~ 135 (396)
++.-.
T Consensus 373 lsQLn 377 (886)
T PRK07773 373 LSQLS 377 (886)
T ss_pred ecccC
Confidence 87553
No 300
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=44.52 E-value=58 Score=27.03 Aligned_cols=31 Identities=26% Similarity=0.090 Sum_probs=24.5
Q ss_pred CcCEEEeCCch--hHHHHHHHHhCCCeEEEeCc
Q 016062 104 DLPCVIHDGIM--HCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 104 ~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~ 134 (396)
.||+||+-.-. ..+..=|.++|||.|.+.-+
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 79998865432 55778899999999998765
No 301
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=44.50 E-value=73 Score=29.23 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=62.7
Q ss_pred cEEEEEcCCCC--CCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCC-CCCCCH---HHHHHH
Q 016062 9 RQVVLVPIPLQ--GHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTP-KASDDF---IDFMSN 82 (396)
Q Consensus 9 ~~il~~~~~~~--GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~-~~~~~~---~~~~~~ 82 (396)
+||++++.++. |=-+...++.+.+..+|.+|.-+-. ......... ++.+........ ...... .+..+.
T Consensus 3 kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~-Gy~GL~~~~----i~~l~~~~v~~~~~~GGT~lgssR~~~~ 77 (347)
T COG0205 3 KKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYN-GYLGLLEGD----IKPLTREDVDDLINRGGTFLGSARFPEF 77 (347)
T ss_pred ceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEec-chhhhcCCc----ceeccccchhHHHhcCCeEEeeCCCCCc
Confidence 57999998755 7777899999999999999877766 333222210 222211100000 000000 000000
Q ss_pred HHHHchHHHHHHHHHHHhcCCCcCEEEe---CCchhHHHHHHHHhCCCeEEEe
Q 016062 83 INLNCRAPLQEALTRMIAKQEDLPCVIH---DGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 83 ~~~~~~~~l~~~~~~l~~~~~~~D~vI~---D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
-...++. ..++.+++. +.|.+|+ |..+..+..+++..++|+|.+.
T Consensus 78 ~~~e~~~---~~~~~l~~~--gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvP 125 (347)
T COG0205 78 KTEEGRK---VAAENLKKL--GIDALVVIGGDGSYTGAALLAEEGGIPVVGVP 125 (347)
T ss_pred ccHHHHH---HHHHHHHHc--CCCEEEEECCCChHHHHHHHHHhcCCcEEecC
Confidence 0011111 233444433 6888775 5556778899999999999863
No 302
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=44.17 E-value=58 Score=29.41 Aligned_cols=76 Identities=9% Similarity=0.084 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCccccccCccccceeeccchhhH
Q 016062 273 LTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGFWTHCGWNSI 352 (396)
Q Consensus 273 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ItHGG~~s~ 352 (396)
..+....+.+.+|+.+.+.+.||.+.++.+.. ++..+++...+-+||+. ||=..-..++
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~-------------------rlL~~lD~~~i~~~PK~--fiGySDiTaL 107 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDDSN-------------------ELLPYLDYELIKKNPKI--FIGYSDITAL 107 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccCHh-------------------hhhhhcCHHHHhhCCCE--EEeccHHHHH
Confidence 34567788899999999999999998874211 35666677777778877 8888888888
Q ss_pred HHHHH--cCCceeeecccC
Q 016062 353 LESIS--EGVPMICRSAFG 369 (396)
Q Consensus 353 ~eal~--~GvP~v~~P~~~ 369 (396)
+-+++ .|++.+-=|...
T Consensus 108 ~~al~~~~g~~t~hGp~~~ 126 (308)
T cd07062 108 HLAIYKKTGLVTYYGPNLL 126 (308)
T ss_pred HHHHHHhcCCeEEECcccc
Confidence 88885 367665556544
No 303
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=44.09 E-value=41 Score=29.44 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
|+|++.-=+|-|--.-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4577777778899999999999999999999887554
No 304
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=44.05 E-value=42 Score=29.40 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
|+|++.-=+|-|-..-...||..|+++|++|.++=-.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 4577776667788899999999999999999887443
No 305
>PRK11519 tyrosine kinase; Provisional
Probab=43.64 E-value=1.3e+02 Score=31.04 Aligned_cols=40 Identities=10% Similarity=0.214 Sum_probs=31.5
Q ss_pred CcEEEEEc--CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVP--IPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~--~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+.|+++++ .|+-|--.-...||..|+..|++|.++-.+..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 44555555 45778999999999999999999999877533
No 306
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=43.59 E-value=41 Score=22.96 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 24 PMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 24 p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
.-+.+|..|+++|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 468899999999999999998543
No 307
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=43.44 E-value=48 Score=29.62 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
|||++.-=+|-|-..-...||..|+++|++|.++=..+.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 468888888899999999999999999999998866443
No 308
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=43.39 E-value=31 Score=22.88 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCC
Q 016062 25 MLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
-+..|..|+++|++|+++-....
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHCCCcEEEEecCcc
Confidence 36778999999999999987543
No 309
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=43.36 E-value=1.7e+02 Score=23.43 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=63.8
Q ss_pred EEEcCCCCCCHHH-HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCC----CC--C---CCCCCHHHHHH
Q 016062 12 VLVPIPLQGHITP-MLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSS----ST--P---KASDDFIDFMS 81 (396)
Q Consensus 12 l~~~~~~~GH~~p-~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~----~~--~---~~~~~~~~~~~ 81 (396)
+.+.+...+.+.. +..+|++|.++|++|.=+..............+....++++.. ++ . ...-+...+-.
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~ 81 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAE 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHH
Confidence 3444555566666 5689999999999998877743222222223555666654321 11 1 11123222211
Q ss_pred HHHHHchHHHHHHHHHHHhcCCCcCEEEeCCch---------hHHHHHHHHhCCCeEEEeCchHH
Q 016062 82 NINLNCRAPLQEALTRMIAKQEDLPCVIHDGIM---------HCAEAVARHLKLPSIILYTLNPT 137 (396)
Q Consensus 82 ~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~---------~~~~~~A~~lgiP~v~~~~~~~~ 137 (396)
. ...++.-.+. ++|++|..-|. -.....|-..|||.++..+....
T Consensus 82 A---------~~~l~~al~~--~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l 135 (159)
T PF10649_consen 82 A---------SAALRRALAE--GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNL 135 (159)
T ss_pred H---------HHHHHHHHhc--CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHH
Confidence 1 1122332333 69999998763 11234577889999998776443
No 310
>PLN02939 transferase, transferring glycosyl groups
Probab=42.76 E-value=44 Score=35.10 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=30.1
Q ss_pred CcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 8 CRQVVLVPIP------LQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 8 ~~~il~~~~~------~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
++||++++.- ..|=-.-.-+|.++|+++||+|.++.|..
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 7999998732 11334457789999999999999999954
No 311
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=42.49 E-value=45 Score=29.85 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
+|+|..=+|-|-..-...||-.|+++|++|.++-.+.
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4777766677899999999999999999999986543
No 312
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=42.33 E-value=36 Score=28.09 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFN 47 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~ 47 (396)
+||++.-.++-| ..=...++++|.+ .||+|.++.++..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 357777777755 6669999999999 5999999999544
No 313
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=42.30 E-value=24 Score=24.49 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 016062 25 MLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
+..+.++|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999888754
No 314
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=42.24 E-value=98 Score=30.71 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=49.7
Q ss_pred EcCccccCCH-HHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeec-Cccc---------cc
Q 016062 267 SFGSIALTGE-KELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWA-PQRQ---------VL 335 (396)
Q Consensus 267 s~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~v-p~~~---------lL 335 (396)
|.||...... ...+.+++.|++.+.+.++-+.++... .+-+.+.+ .++++.+.-. .+.+ +-
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~------~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~t 74 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAIL------PLYDALSQ--STQIRHILARHEQGAGFIAQGMARTT 74 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccH------HHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHc
Confidence 3455444332 446678888888888877776664210 01112210 0123332211 1111 12
Q ss_pred cCccccceeeccchh------hHHHHHHcCCceeeecc
Q 016062 336 AHSAVGGFWTHCGWN------SILESISEGVPMICRSA 367 (396)
Q Consensus 336 ~~~~~~~~ItHGG~~------s~~eal~~GvP~v~~P~ 367 (396)
+++.+ +++|.|-| ++.||-..++|+|++.-
T Consensus 75 g~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G 110 (564)
T PRK08155 75 GKPAV--CMACSGPGATNLVTAIADARLDSIPLVCITG 110 (564)
T ss_pred CCCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 34444 88887744 89999999999999854
No 315
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.23 E-value=54 Score=27.85 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=24.9
Q ss_pred CccCCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 1 MEKQGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 1 ~~~m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|..|.. ++|++. ++.|+ --..|++.|.++||+|++++.
T Consensus 1 ~~~~~~--~~vlIt--Gasg~--iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 1 MGSLMG--RVALVT--GAARG--LGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCCC--CEEEEe--CCCch--HHHHHHHHHHHCCCeEEEEeC
Confidence 444443 356653 33455 357889999999999877555
No 316
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=42.23 E-value=36 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
+++|+++-.+. .....++.|.+.||+|++++++
T Consensus 13 ~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 47788776554 3477899999999999999753
No 317
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=41.97 E-value=2.3e+02 Score=27.56 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhC--CCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSR--GFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~r--GH~Vt~~~~ 44 (396)
+|||++-.+++.| +|+++|++. |++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 5799998888877 578888877 999887754
No 318
>PRK07004 replicative DNA helicase; Provisional
Probab=41.87 E-value=79 Score=30.44 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHS-RGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~-rGH~Vt~~~~~~~~ 48 (396)
+.-+++...|+.|-..-++.+|...+. .|+.|.|++.+-..
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 345677778899999999999998874 59999999986544
No 319
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=41.83 E-value=25 Score=28.23 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=23.0
Q ss_pred Cccccceeeccchh------hHHHHHHcCCceeeecc
Q 016062 337 HSAVGGFWTHCGWN------SILESISEGVPMICRSA 367 (396)
Q Consensus 337 ~~~~~~~ItHGG~~------s~~eal~~GvP~v~~P~ 367 (396)
++.+ +++|+|-| .+.||...++|||++.-
T Consensus 60 ~~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVA--VVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEE--EEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3445 88888744 77899999999999954
No 320
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=41.78 E-value=55 Score=25.01 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=28.4
Q ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHh--CCCCeEEEECC
Q 016062 261 HSVIYVSFGSIALTGEKELAEMAWGLAN--SKQPFLWVLRP 299 (396)
Q Consensus 261 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~~~ 299 (396)
+.++++++||........+..+.+.+++ .+..+-|.+..
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 3689999999877555677778888854 34577777754
No 321
>PRK13604 luxD acyl transferase; Provisional
Probab=41.48 E-value=55 Score=29.45 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAH 43 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~ 43 (396)
+...+++.++..++-.-+..+|+.|+++|..|..+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 446777777777777779999999999999977653
No 322
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=41.27 E-value=65 Score=31.11 Aligned_cols=53 Identities=15% Similarity=0.002 Sum_probs=34.3
Q ss_pred ccCccccceeeccchhhHHHHHHc----CCceeeecccCccccccccCCCCcHHHHHHHHHHHh
Q 016062 335 LAHSAVGGFWTHCGWNSILESISE----GVPMICRSAFGDQKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 335 L~~~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~~~~l~~~~~~il 394 (396)
...+++ +|+=||-||++.|.+. ++|++++-...=-+. -..+..++.+++++|+
T Consensus 260 ~~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFL-----t~i~~~e~~~~Le~il 316 (508)
T PLN02935 260 HTKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFM-----TPFHSEQYRDCLDAIL 316 (508)
T ss_pred ccCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCCCccee-----cccCHHHHHHHHHHHH
Confidence 345667 9999999999999874 578888754322221 1123455666666654
No 323
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=41.13 E-value=12 Score=30.49 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=22.0
Q ss_pred CccccceeeccchhhHHHHHHcCCceeeecccC
Q 016062 337 HSAVGGFWTHCGWNSILESISEGVPMICRSAFG 369 (396)
Q Consensus 337 ~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~ 369 (396)
+..+.++|+.||...+..... ++|+|-++..+
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 344555999999999999887 99999999864
No 324
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.00 E-value=41 Score=28.40 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=24.0
Q ss_pred CccCCCCCcEEEEEcCC--CCCCHHHHHHHHHHHHhCCCeEEEE
Q 016062 1 MEKQGHRCRQVVLVPIP--LQGHITPMLQLGTILHSRGFSITVA 42 (396)
Q Consensus 1 ~~~m~~~~~~il~~~~~--~~GH~~p~l~la~~L~~rGH~Vt~~ 42 (396)
|+-|.+ +++|++.... +.|| +||+++++.|+.|.-.
T Consensus 1 ~e~~~~-~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~At 38 (289)
T KOG1209|consen 1 SELQSQ-PKKVLITGCSSGGIGY-----ALAKEFARNGYLVYAT 38 (289)
T ss_pred CCcccC-CCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEE
Confidence 344555 5667766543 4455 6899999999996543
No 325
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=40.99 E-value=72 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.1
Q ss_pred CcCEEEeCCc--hhHHHHHHHHhCCCeEEE
Q 016062 104 DLPCVIHDGI--MHCAEAVARHLKLPSIIL 131 (396)
Q Consensus 104 ~~D~vI~D~~--~~~~~~~A~~lgiP~v~~ 131 (396)
++|.|+.=.. ...|..+|.+||+|+|.+
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 6999996442 366899999999999997
No 326
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.81 E-value=64 Score=25.59 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=29.7
Q ss_pred CcEEEEEcCC-------CCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIP-------LQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~-------~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
++|+.++-.| +..|+.-+..-|++|+++|-+.+++...
T Consensus 43 GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 43 GKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred CceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 4677776544 4579999999999999999887666653
No 327
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=40.20 E-value=38 Score=31.69 Aligned_cols=39 Identities=13% Similarity=0.034 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
++||++...++ +...-...+.++|.+.|++|.++.++..
T Consensus 3 ~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A 41 (390)
T TIGR00521 3 NKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAA 41 (390)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 46788887777 4556689999999999999999988544
No 328
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=39.93 E-value=40 Score=25.23 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 22 ITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 22 ~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+.|+..|.-.+.-|||.+|++.|....
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~ 35 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYK 35 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHh
Confidence 678889999999999999999996443
No 329
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.75 E-value=69 Score=28.15 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=33.6
Q ss_pred CccccceeeccchhhHHHHHHc-----CCceeeecc-cCccccccccCCCCcHHHHHHHHHHHh
Q 016062 337 HSAVGGFWTHCGWNSILESISE-----GVPMICRSA-FGDQKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 337 ~~~~~~~ItHGG~~s~~eal~~-----GvP~v~~P~-~~DQ~~na~~~~~~~~~~l~~~~~~il 394 (396)
.+++ +|+=||=||+..|++. .+|++.+-. ..--+.+ ..+.+++.+++++++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G~lGFL~-----~~~~~~~~~~l~~i~ 95 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKDQLGFYC-----DFHIDDLDKMIQAIT 95 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCCCCeEcc-----cCCHHHHHHHHHHHH
Confidence 3566 9999999999999874 578777766 3222221 123456666666654
No 330
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=39.74 E-value=84 Score=26.03 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=24.3
Q ss_pred CcCEEEeCCc--hhHHHHHHHHhCCCeEEEeCc
Q 016062 104 DLPCVIHDGI--MHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 104 ~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~~ 134 (396)
++|+|+.=.. .+.|..+|..+|+|++.+...
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 6999986443 367889999999999997543
No 331
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=39.66 E-value=46 Score=31.28 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
++||++...++. ...=...+.++|.++|++|.++.++...
T Consensus 6 ~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~ 45 (399)
T PRK05579 6 GKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAK 45 (399)
T ss_pred CCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHH
Confidence 467888877774 5667889999999999999999885443
No 332
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.64 E-value=28 Score=30.99 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=26.0
Q ss_pred ccccCccccceeeccchhhHHHHHHc----CCceeeecc
Q 016062 333 QVLAHSAVGGFWTHCGWNSILESISE----GVPMICRSA 367 (396)
Q Consensus 333 ~lL~~~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~ 367 (396)
++.+.+++ +|+-||-||+..|++. ++|++++-.
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 34445677 9999999999988763 789888765
No 333
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=39.11 E-value=53 Score=24.56 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
++....++..|-.....++..|.++|++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5666677778999999999999999999998854
No 334
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=38.88 E-value=1.5e+02 Score=24.65 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=61.8
Q ss_pred hhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecC
Q 016062 251 CIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAP 330 (396)
Q Consensus 251 l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp 330 (396)
..++..+. +-+..++.-..... ...+=+.+.+.+.+.+..+++..+. +.-|.+.+.++.+.+
T Consensus 42 ~lerA~~~-gIpt~~~~~k~~~~-r~~~d~~l~~~l~~~~~dlvvLAGy--------MrIL~~~fl~~~~gr-------- 103 (200)
T COG0299 42 ALERAAKA-GIPTVVLDRKEFPS-REAFDRALVEALDEYGPDLVVLAGY--------MRILGPEFLSRFEGR-------- 103 (200)
T ss_pred HHHHHHHc-CCCEEEeccccCCC-HHHHHHHHHHHHHhcCCCEEEEcch--------HHHcCHHHHHHhhcc--------
Confidence 34444442 33445555544432 4455566999999988887766543 233556654444332
Q ss_pred cccccc-CccccceeeccchhhHHHHHHcCCceeeeccc
Q 016062 331 QRQVLA-HSAVGGFWTHCGWNSILESISEGVPMICRSAF 368 (396)
Q Consensus 331 ~~~lL~-~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~ 368 (396)
||+ ||++ .=.++|..+..+|+.+|+..-++-++
T Consensus 104 ---IlNIHPSL--LP~f~G~h~~~~A~~aG~k~sG~TVH 137 (200)
T COG0299 104 ---ILNIHPSL--LPAFPGLHAHEQALEAGVKVSGCTVH 137 (200)
T ss_pred ---eEecCccc--ccCCCCchHHHHHHHcCCCccCcEEE
Confidence 333 7888 88899999999999999998777764
No 335
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=38.75 E-value=79 Score=21.84 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=27.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAH 43 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~ 43 (396)
+++...++.|=-.-...+++.|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666677888999999999999999998877
No 336
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=38.54 E-value=43 Score=27.27 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCHHH-HHHHHHHHHh-CCCeEEEEeCCCCC
Q 016062 11 VVLVPIPLQGHITP-MLQLGTILHS-RGFSITVAHAQFNS 48 (396)
Q Consensus 11 il~~~~~~~GH~~p-~l~la~~L~~-rGH~Vt~~~~~~~~ 48 (396)
|++.-.++ ||... ...+.++|++ +||+|.++.++...
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 44444454 78766 8899999985 59999999985443
No 337
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.18 E-value=29 Score=31.23 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=25.3
Q ss_pred cCccccceeeccchhhHHHHHHc----CCceeeecc
Q 016062 336 AHSAVGGFWTHCGWNSILESISE----GVPMICRSA 367 (396)
Q Consensus 336 ~~~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~ 367 (396)
.++++ +|+-||-||+.+++.. ++|++++..
T Consensus 56 ~~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 35667 9999999999999875 789998876
No 338
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=38.13 E-value=62 Score=25.62 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=44.3
Q ss_pred EEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCccccccCccccce
Q 016062 264 IYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAVGGF 343 (396)
Q Consensus 264 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~~~~ 343 (396)
|-|=+||.. +....+++.+.|++.+..+-+.+..- +..|+.+. +++...+= .+.++ |
T Consensus 3 V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--------HR~p~~l~----------~~~~~~~~-~~~~v--i 59 (150)
T PF00731_consen 3 VAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--------HRTPERLL----------EFVKEYEA-RGADV--I 59 (150)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--------TTSHHHHH----------HHHHHTTT-TTESE--E
T ss_pred EEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHH----------HHHHHhcc-CCCEE--E
Confidence 444456654 56778888889988886655544332 23555542 12211111 22344 8
Q ss_pred eeccchhhHHHHHH---cCCceeeecccCccc
Q 016062 344 WTHCGWNSILESIS---EGVPMICRSAFGDQK 372 (396)
Q Consensus 344 ItHGG~~s~~eal~---~GvP~v~~P~~~DQ~ 372 (396)
|.=.|...-.-++. .-.|+|.+|...++.
T Consensus 60 Ia~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~ 91 (150)
T PF00731_consen 60 IAVAGMSAALPGVVASLTTLPVIGVPVSSGYL 91 (150)
T ss_dssp EEEEESS--HHHHHHHHSSS-EEEEEE-STTT
T ss_pred EEECCCcccchhhheeccCCCEEEeecCcccc
Confidence 88777543332222 267999999876644
No 339
>PRK04946 hypothetical protein; Provisional
Probab=38.05 E-value=32 Score=28.24 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCc-cccccCccccceeeccchhhHH
Q 016062 279 LAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQ-RQVLAHSAVGGFWTHCGWNSIL 353 (396)
Q Consensus 279 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~-~~lL~~~~~~~~ItHGG~~s~~ 353 (396)
+..++..+...+.+.+.++.+.. .++.++. +..|+.| ..|++..+. --.|||.|.+.
T Consensus 112 L~~fl~~a~~~g~r~v~IIHGkG-----------~gvLk~~-----V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 112 LGALIAACRKEHVFCACVMHGHG-----------KHILKQQ-----TPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC-----------HhHHHHH-----HHHHHcCCchhheeecc--CcccCCceEEE
Confidence 33344444445777666666542 2332221 5688876 447766555 77899998753
No 340
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=37.81 E-value=1.3e+02 Score=27.63 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCC-eEEEEeC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGF-SITVAHA 44 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH-~Vt~~~~ 44 (396)
..||+++-.++-| ..+|+.|++.|+ +++++=.
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADR 56 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcC
Confidence 4689999888766 788999999998 5555544
No 341
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=37.58 E-value=88 Score=26.91 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
++|+++-=++-|--.-...++.+|++.||+|..+..++-+
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKa 41 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKA 41 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCc
Confidence 3599999999999999999999999999999999986544
No 342
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=37.46 E-value=53 Score=27.92 Aligned_cols=32 Identities=6% Similarity=0.061 Sum_probs=24.7
Q ss_pred CcCEEEeCCch--hHHHHHHHHhCCCeEEEeCch
Q 016062 104 DLPCVIHDGIM--HCAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 104 ~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 135 (396)
+||+||..... .....-....++|++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 79999988766 556777888999999998765
No 343
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=37.31 E-value=89 Score=25.94 Aligned_cols=38 Identities=11% Similarity=0.304 Sum_probs=29.0
Q ss_pred cEEEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 9 RQVVLVP-IPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 9 ~~il~~~-~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
+.|++.. -++-|--.-...||..|+++|++|.++=.+.
T Consensus 18 kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 18 KVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4455553 4456888889999999999999998876643
No 344
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=37.26 E-value=55 Score=25.31 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=28.6
Q ss_pred EEEEE-cCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 10 QVVLV-PIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 10 ~il~~-~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
|+.++ ..+..--+.|..-|+...+++|+||+++.+-
T Consensus 4 k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 4 KLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 34443 4455578999999999999999999999883
No 345
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=37.09 E-value=41 Score=30.03 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+||+++-.++.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 357777665554 6788899999999999987
No 346
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=37.07 E-value=2.8e+02 Score=24.11 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
+|+++...+-| ..||+.|.++|++|++.+...
T Consensus 4 ~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~ 35 (248)
T PRK08057 4 RILLLGGTSEA-----RALARALAAAGVDIVLSLAGR 35 (248)
T ss_pred eEEEEechHHH-----HHHHHHHHhCCCeEEEEEccC
Confidence 47777666554 578999999999988766533
No 347
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=37.05 E-value=65 Score=29.06 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 4 QGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 4 m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|++.+++|++ +. +.|-+ -..|+++|.++||+|+++.-
T Consensus 1 ~~~~~k~vlV-tG-~~G~I--G~~l~~~L~~~G~~V~~~~r 37 (325)
T PLN02989 1 MADGGKVVCV-TG-ASGYI--ASWIVKLLLFRGYTINATVR 37 (325)
T ss_pred CCCCCCEEEE-EC-CchHH--HHHHHHHHHHCCCEEEEEEc
Confidence 3333344544 43 33433 67889999999999987654
No 348
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=36.99 E-value=87 Score=23.98 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHhCCCeE-EEEeC
Q 016062 21 HITPMLQLGTILHSRGFSI-TVAHA 44 (396)
Q Consensus 21 H~~p~l~la~~L~~rGH~V-t~~~~ 44 (396)
...-.+.+|+.+.++||+| .++..
T Consensus 16 ~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 16 QASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 4456888999999999994 66555
No 349
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=36.93 E-value=2.8e+02 Score=26.85 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+|||+.-. |-+ ...+++++.+.|++++.+.+..+.
T Consensus 3 ~kvLi~~~---gei--a~~ii~a~~~~Gi~~v~v~~~~d~ 37 (472)
T PRK07178 3 KKILIANR---GEI--AVRIVRACAEMGIRSVAIYSEADR 37 (472)
T ss_pred cEEEEECC---cHH--HHHHHHHHHHcCCeEEEEeCCCcc
Confidence 36777733 322 678999999999999888875443
No 350
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=36.85 E-value=39 Score=28.67 Aligned_cols=40 Identities=15% Similarity=-0.051 Sum_probs=32.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
.-+++.-.|+.|--.-++.++.+-+++|+.|.+++.+...
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~ 56 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEERE 56 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCH
Confidence 4566666778888888888888887889999999996554
No 351
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=36.52 E-value=63 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=25.7
Q ss_pred EEEEEcCCCC----CCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIPLQ----GHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~~~----GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+|+++..... .+..-...|+++|+++||.+++-..
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg 40 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGG 40 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCC
Confidence 5777775443 3556688999999999999877553
No 352
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=36.51 E-value=22 Score=33.11 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
-|++---|+-|-=.=+++++..|+++| .|.+++.++..
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~ 132 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESL 132 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCH
Confidence 466666788899999999999999999 99999997654
No 353
>PRK11914 diacylglycerol kinase; Reviewed
Probab=36.45 E-value=76 Score=28.50 Aligned_cols=29 Identities=14% Similarity=0.089 Sum_probs=22.6
Q ss_pred ccccceeeccchhhHHHHHH----cCCceeeeccc
Q 016062 338 SAVGGFWTHCGWNSILESIS----EGVPMICRSAF 368 (396)
Q Consensus 338 ~~~~~~ItHGG~~s~~eal~----~GvP~v~~P~~ 368 (396)
.++ +|--||=||+.|++. .++|+-++|..
T Consensus 65 ~d~--vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 65 TDA--LVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred CCE--EEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 455 889999999888873 46888888873
No 354
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=36.17 E-value=34 Score=31.96 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
+--|++++++..|+-+-...++.+|+.+|+=|..+-+..
T Consensus 99 ~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrD 137 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRD 137 (379)
T ss_dssp -EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---S
T ss_pred CCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCC
Confidence 456899999999999999999999999999998888743
No 355
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=36.17 E-value=1.6e+02 Score=24.74 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=31.7
Q ss_pred hhhhhccC--CCCeEEEEEcCccccCCHHHHHHHHHHHHhC-CCCeEEE
Q 016062 251 CIEWLDKQ--TQHSVIYVSFGSIALTGEKELAEMAWGLANS-KQPFLWV 296 (396)
Q Consensus 251 l~~~l~~~--~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~ 296 (396)
+.+++... ....++|+...|. ...+....+.+++++. ++.+...
T Consensus 20 l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 20 IDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred HHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 66666654 3566899877666 4667788899999998 8765533
No 356
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=36.15 E-value=84 Score=28.13 Aligned_cols=110 Identities=11% Similarity=0.022 Sum_probs=60.0
Q ss_pred CeEEecccccCCCCCCCCccccCchhhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCC
Q 016062 226 PIFSIGPMHLAAPASSCSLLKEDTSCIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGL 305 (396)
Q Consensus 226 pv~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 305 (396)
|=.++|....++.. . -....++++...+.+-+++-+-............+..+.++++++|..+++-.+....
T Consensus 97 pdrf~~~~~v~p~~---~-~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~--- 169 (293)
T COG2159 97 PDRFVGFARVDPRD---P-EAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG--- 169 (293)
T ss_pred CcceeeeeeeCCCc---h-HHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC---
Confidence 34566666665442 1 1123346666665443443332222222344555788999999999999886665421
Q ss_pred CCCCCCchhHHHHhcCCcEEEeecC---ccccccCccccceeeccc--hhhHHHHH
Q 016062 306 DPTDLLPDSFKETVEKRGCIVNWAP---QRQVLAHSAVGGFWTHCG--WNSILESI 356 (396)
Q Consensus 306 ~~~~~lp~~~~~~~~~~~~~~~~vp---~~~lL~~~~~~~~ItHGG--~~s~~eal 356 (396)
+.... .....| .......|+++.++.|.| ..=..|++
T Consensus 170 ------~~~~~--------~~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~ 211 (293)
T COG2159 170 ------GAGLE--------KGHSDPLYLDDVARKFPELKIVLGHMGEDYPWELEAI 211 (293)
T ss_pred ------Ccccc--------cCCCCchHHHHHHHHCCCCcEEEEecCCCCchhHHHH
Confidence 11100 001112 223456789999999999 55555553
No 357
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=36.13 E-value=53 Score=28.23 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=27.3
Q ss_pred EEEEcCCCCCCH-HHHHHHHHHHHhC--CCeEEEEeCCCC
Q 016062 11 VVLVPIPLQGHI-TPMLQLGTILHSR--GFSITVAHAQFN 47 (396)
Q Consensus 11 il~~~~~~~GH~-~p~l~la~~L~~r--GH~Vt~~~~~~~ 47 (396)
|++--.++ |+. .=...+.++|+++ ||+|.++.++..
T Consensus 2 i~~~itGs-~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a 40 (234)
T TIGR02700 2 IGWGITGA-GHLLVESFQVMKELKREIEELRVSTFVSRAG 40 (234)
T ss_pred eEEEEeCc-cHhHHHHHHHHHHHHhhcCCCeEEEEEChhH
Confidence 44444444 445 6899999999999 999999998543
No 358
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=35.94 E-value=1.2e+02 Score=21.26 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 21 HITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 21 H~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
+.+.+..|-..|++.||+|.+.-++
T Consensus 23 rt~RL~GLqa~L~~dGh~v~L~~~~ 47 (88)
T PF15092_consen 23 RTFRLEGLQAVLAKDGHEVILEKIE 47 (88)
T ss_pred hHHHHHHHHHHHHhCCcEEEEEEec
Confidence 5678999999999999999998873
No 359
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=35.88 E-value=3.7e+02 Score=25.09 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
.-+++.--|+.|--.-++.+|..++++|..|.+++.+..
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 345666677889999999999999999999999988644
No 360
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=35.70 E-value=71 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=26.6
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 12 VLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 12 l~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+++.++..+.-.-+..+++.|+++|+.|..+..
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 456666667777899999999999999888844
No 361
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=35.67 E-value=2e+02 Score=24.76 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=30.2
Q ss_pred hhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeE
Q 016062 251 CIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFL 294 (396)
Q Consensus 251 l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 294 (396)
+.+|+. ..+.++||-.-|.........+.+.++++++++.+.
T Consensus 24 ~~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~ 65 (233)
T PRK05282 24 IAELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVT 65 (233)
T ss_pred HHHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 345555 346799998766555556778889999999988754
No 362
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=35.66 E-value=48 Score=29.99 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=29.0
Q ss_pred cEEEEEcCCCC---CCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 9 RQVVLVPIPLQ---GHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 9 ~~il~~~~~~~---GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
|||+|+.-|-. -+......|.++-++|||+|.++.+..
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 35777775432 255568899999999999999999853
No 363
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=35.65 E-value=72 Score=25.96 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC-C-----CCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN-S-----PHASNHPDFTFLPLSDGSSSTPKASDDFIDFMS 81 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~-~-----~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (396)
...|-+++..+.|-....+.+|-+-+-+|.+|.++--=.. . ......+++++.....++.... .+.. .
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~---~~~~---~ 76 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRM---NEEE---E 76 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----G---GGHH---H
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccC---CCcH---H
Confidence 3568889999999888777776666666777777654211 1 0011224566666664322111 1111 1
Q ss_pred HHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchh
Q 016062 82 NINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMH 115 (396)
Q Consensus 82 ~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~ 115 (396)
. ...++..++...+.+. +. .+|+||.|....
T Consensus 77 ~-~~~~~~~~~~a~~~i~-~~-~~dlvILDEi~~ 107 (172)
T PF02572_consen 77 D-RAAAREGLEEAKEAIS-SG-EYDLVILDEINY 107 (172)
T ss_dssp H-HHHHHHHHHHHHHHTT--T-T-SEEEEETHHH
T ss_pred H-HHHHHHHHHHHHHHHh-CC-CCCEEEEcchHH
Confidence 1 3344444444434433 33 799999998653
No 364
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=35.57 E-value=31 Score=31.25 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=35.5
Q ss_pred cccCccccceeeccchhhHHHHHH---cCCceeeecccCccccccc
Q 016062 334 VLAHSAVGGFWTHCGWNSILESIS---EGVPMICRSAFGDQKVNAS 376 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~---~GvP~v~~P~~~DQ~~na~ 376 (396)
-|..-++.++|.=||-+|+.-|.. +|+|+|++|-+.|-....-
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTIDNDi~gt 132 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTIDNDIPGT 132 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEecccccCCCCCC
Confidence 466678888999999999987755 5999999999998766654
No 365
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=35.39 E-value=67 Score=31.49 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=21.7
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
+||+||.+.. ...+|+++|||++.+.
T Consensus 362 ~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 7999998864 6679999999998764
No 366
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=35.35 E-value=62 Score=31.64 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=22.4
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEEeC
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIILYT 133 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~ 133 (396)
+||+||.+.. ...+|+++|||++.++.
T Consensus 364 ~pdliiG~~~---er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 364 EPELVLGTQM---ERHSAKRLDIPCGVISA 390 (511)
T ss_pred CCCEEEEChH---HHHHHHHcCCCEEEecC
Confidence 7999999974 66789999999987654
No 367
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.32 E-value=1.2e+02 Score=28.65 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCcCEEEeCCch-hHHHHH------HHHhCCCeEEEeCchHH
Q 016062 93 EALTRMIAKQEDLPCVIHDGIM-HCAEAV------ARHLKLPSIILYTLNPT 137 (396)
Q Consensus 93 ~~~~~l~~~~~~~D~vI~D~~~-~~~~~~------A~~lgiP~v~~~~~~~~ 137 (396)
+..++|++. +.|+||.-+.| .|.... -++.|||.|.+.+....
T Consensus 327 eIa~~Lk~d--gVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI 376 (431)
T TIGR01917 327 EFSKELLAA--GVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPI 376 (431)
T ss_pred HHHHHHHHc--CCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhH
Confidence 466677666 79999998776 554332 37889999999887554
No 368
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=35.21 E-value=1.1e+02 Score=24.32 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+.+|+++-.+. ++.+-+.||++|.++|.+|.|=++..+
T Consensus 57 ~~~vLVLGTgE--fMy~Pl~lA~~Le~~g~~V~~qSTTRS 94 (155)
T PF12500_consen 57 GERVLVLGTGE--FMYLPLLLAEELEQAGADVRYQSTTRS 94 (155)
T ss_pred CCcEEEEccch--HHHHHHHHHHHHHhcCCceEEeCCCCC
Confidence 46888886666 789999999999999999988777433
No 369
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.04 E-value=37 Score=29.99 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=26.6
Q ss_pred cccccCccccceeeccchhhHHHHHHc----CCceeeecc
Q 016062 332 RQVLAHSAVGGFWTHCGWNSILESISE----GVPMICRSA 367 (396)
Q Consensus 332 ~~lL~~~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~ 367 (396)
.++...+++ +|+=||=||+..|.+. ++|++.+-.
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC
Confidence 445556677 9999999999988663 689888765
No 370
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=34.98 E-value=74 Score=26.01 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=24.7
Q ss_pred HHHHHhcCCCcCEEEeCCchhH-HHHHHHHhCCCeEEEeCc
Q 016062 95 LTRMIAKQEDLPCVIHDGIMHC-AEAVARHLKLPSIILYTL 134 (396)
Q Consensus 95 ~~~l~~~~~~~D~vI~D~~~~~-~~~~A~~lgiP~v~~~~~ 134 (396)
++.+.+. +||+||....... ...--++.|+|++.+...
T Consensus 53 ~E~l~~l--~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 53 VEKIVAL--KPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred HHHHhcc--CCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 3444444 7999998654322 345567889999887543
No 371
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=34.78 E-value=92 Score=26.53 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
++|++ +. +.|.+ -..+++.|.++|++|+.+...
T Consensus 7 ~~ilI-tG-asg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 7 RVALV-TG-AARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CEEEE-cC-CCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 34543 33 33555 578899999999999887763
No 372
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=34.73 E-value=1.1e+02 Score=28.85 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCcCEEEeCCch-hHHHHH------HHHhCCCeEEEeCchHH
Q 016062 92 QEALTRMIAKQEDLPCVIHDGIM-HCAEAV------ARHLKLPSIILYTLNPT 137 (396)
Q Consensus 92 ~~~~~~l~~~~~~~D~vI~D~~~-~~~~~~------A~~lgiP~v~~~~~~~~ 137 (396)
.+..++|++. ++|+||.-+.| .|.... -++.|||.|.+.+-...
T Consensus 326 ~eIa~~Lk~d--gVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pi 376 (431)
T TIGR01918 326 KEFVVELKQG--GVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPI 376 (431)
T ss_pred HHHHHHHHHc--CCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccH
Confidence 3466777766 79999999776 554332 27889999999876543
No 373
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=34.73 E-value=74 Score=26.20 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
|||.++ |.||+ -+.+|-.|+++||+|+.+=.+.
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCCh
Confidence 456666 44555 4778889999999999987743
No 374
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=34.66 E-value=33 Score=31.21 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=34.6
Q ss_pred cccCccccceeeccchhhHHHHHH---cCCceeeecccCccccccc
Q 016062 334 VLAHSAVGGFWTHCGWNSILESIS---EGVPMICRSAFGDQKVNAS 376 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~---~GvP~v~~P~~~DQ~~na~ 376 (396)
-|..-++.++|.=||.+|+.-|.. .|+|+|++|-+.|-....-
T Consensus 89 ~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTIDNDl~gt 134 (324)
T TIGR02483 89 NLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTIDNDLEAT 134 (324)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccCCCCcCC
Confidence 455667888999999999987755 5999999999988765443
No 375
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.66 E-value=73 Score=30.32 Aligned_cols=28 Identities=7% Similarity=0.306 Sum_probs=22.6
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEEeCc
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 134 (396)
+||++|.+.. ...+|+++|+|++.+...
T Consensus 370 ~pdliig~~~---~~~~a~~~gip~~~~~~p 397 (430)
T cd01981 370 EPELIFGTQM---ERHIGKRLDIPCAVISAP 397 (430)
T ss_pred CCCEEEecch---hhHHHHHcCCCEEEEeCC
Confidence 7999999974 455789999999987543
No 376
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.63 E-value=80 Score=27.43 Aligned_cols=35 Identities=6% Similarity=0.030 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.|+++++..+.| .---.++|++|+++|++|++...
T Consensus 8 ~k~~lITGas~~-~GIG~a~a~~la~~G~~v~~~~r 42 (260)
T PRK06603 8 GKKGLITGIANN-MSISWAIAQLAKKHGAELWFTYQ 42 (260)
T ss_pred CcEEEEECCCCC-cchHHHHHHHHHHcCCEEEEEeC
Confidence 468888888763 11346889999999999887643
No 377
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.56 E-value=38 Score=30.25 Aligned_cols=33 Identities=9% Similarity=0.199 Sum_probs=26.6
Q ss_pred ccccCccccceeeccchhhHHHHHHc----CCceeeecc
Q 016062 333 QVLAHSAVGGFWTHCGWNSILESISE----GVPMICRSA 367 (396)
Q Consensus 333 ~lL~~~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~ 367 (396)
++...+++ +|+=||=||+..|++. ++|++++-.
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~ 96 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT 96 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec
Confidence 34445677 9999999999999883 789998876
No 378
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=34.34 E-value=2.1e+02 Score=26.96 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=60.4
Q ss_pred CCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecC--cccccc
Q 016062 259 TQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAP--QRQVLA 336 (396)
Q Consensus 259 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp--~~~lL~ 336 (396)
.+||.|-+|+ ......-.+.+.+.|++.++.+++-...+.+- ...| ++=....+..-++ -.+|-.
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG---------~aME-~Li~~G~~~~VlDlTttEl~d 249 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTGG---------RAME-RLIREGQFDGVLDLTTTELAD 249 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCch---------HHHH-HHHHcCCcEEEEECcHHHHHH
Confidence 4577787765 55566778889999999999987655444211 1111 1112222222222 222331
Q ss_pred CccccceeeccchhhHHHHHHcCCceeeecccCcc
Q 016062 337 HSAVGGFWTHCGWNSILESISEGVPMICRSAFGDQ 371 (396)
Q Consensus 337 ~~~~~~~ItHGG~~s~~eal~~GvP~v~~P~~~DQ 371 (396)
+ +-+=|..+|-+-+..|...|+|+|+.|-.-|-
T Consensus 250 ~--l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalDm 282 (403)
T PF06792_consen 250 E--LFGGVLSAGPDRLEAAARAGIPQVVSPGALDM 282 (403)
T ss_pred H--HhCCCCCCCchHHHHHHHcCCCEEEecCccce
Confidence 1 22346778888999999999999999986663
No 379
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.29 E-value=79 Score=27.03 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 016062 25 MLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~ 44 (396)
-..++++|+++|++|++..-
T Consensus 19 G~~l~~~l~~~g~~v~~~~~ 38 (252)
T PRK06077 19 GRAIAVRLAKEGSLVVVNAK 38 (252)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 48899999999999877543
No 380
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=34.21 E-value=87 Score=28.60 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCCcCEEEeCCchh-------HH---HHHHHHhCCCeEEE
Q 016062 89 APLQEALTRMIAKQEDLPCVIHDGIMH-------CA---EAVARHLKLPSIIL 131 (396)
Q Consensus 89 ~~l~~~~~~l~~~~~~~D~vI~D~~~~-------~~---~~~A~~lgiP~v~~ 131 (396)
..+.++++++ +||++|+-+-+. |+ ..+.++++||.+.-
T Consensus 70 ~~i~~mv~~~-----~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 70 KKILEMVKKL-----KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHhc-----CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 3334555555 899999988532 22 23567999999984
No 381
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=34.10 E-value=1.9e+02 Score=25.67 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCC
Q 016062 26 LQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 26 l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
.+|..+|.+.||+|++++-....
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCcc
Confidence 56888999999999999975443
No 382
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=34.05 E-value=81 Score=28.20 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=28.2
Q ss_pred cEEEEEcCCCC-CCHH---HHHHHHHHHHhCCCeEEEEeCC
Q 016062 9 RQVVLVPIPLQ-GHIT---PMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 9 ~~il~~~~~~~-GH~~---p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
++|++++.+.. =|-. ....+.++|.++||+|.++...
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 47888874432 2544 6789999999999999998764
No 383
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=34.00 E-value=87 Score=26.05 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
..|+++-..|-|-..-...||..++.+|..|.+++.+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 3466677778899999999999999999999999996544
No 384
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=33.96 E-value=2.8e+02 Score=23.55 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=32.1
Q ss_pred hhhhhccCCCCeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeE
Q 016062 251 CIEWLDKQTQHSVIYVSFGSIALTGEKELAEMAWGLANSKQPFL 294 (396)
Q Consensus 251 l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 294 (396)
+.+|+.. ..+++.|+=+-|...-.....+...++|+++|+.+.
T Consensus 24 i~n~l~g-~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~ 66 (224)
T COG3340 24 IANFLQG-KRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVS 66 (224)
T ss_pred HHHHhcC-CCceEEEEecCccccchHHHHHHHHHHHHHcCCeee
Confidence 3445554 256899998887776667788899999999988643
No 385
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=33.94 E-value=43 Score=29.96 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
+-++++..+.| --.+.|++|++||.+|.+++-.
T Consensus 50 ~WAVVTGaTDG---IGKayA~eLAkrG~nvvLIsRt 82 (312)
T KOG1014|consen 50 SWAVVTGATDG---IGKAYARELAKRGFNVVLISRT 82 (312)
T ss_pred CEEEEECCCCc---chHHHHHHHHHcCCEEEEEeCC
Confidence 46677765543 2368999999999999988874
No 386
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.92 E-value=1.1e+02 Score=23.45 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=28.7
Q ss_pred EEEEEcCCCC-CCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 10 QVVLVPIPLQ-GHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 10 ~il~~~~~~~-GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
-++++-.|.. -.+...+-+...|.++|.+|++.+++..
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa 43 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAA 43 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhh
Confidence 3455555543 4667788899999999999999999643
No 387
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.79 E-value=67 Score=27.83 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=20.8
Q ss_pred CcCEEEeCCchhH--HH-HHHHHhCCCeEEEeCc
Q 016062 104 DLPCVIHDGIMHC--AE-AVARHLKLPSIILYTL 134 (396)
Q Consensus 104 ~~D~vI~D~~~~~--~~-~~A~~lgiP~v~~~~~ 134 (396)
+||+||....... .. .+.+.+|+|++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 7999998754322 12 2444589999988654
No 388
>PRK07454 short chain dehydrogenase; Provisional
Probab=33.75 E-value=92 Score=26.48 Aligned_cols=35 Identities=6% Similarity=0.009 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
++|.++++.++ | .--..++++|.++|++|+++.-.
T Consensus 5 ~~k~vlItG~s-g--~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITGAS-S--GIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeCCC-c--hHHHHHHHHHHHCCCEEEEEeCC
Confidence 34555555433 4 34578899999999998887753
No 389
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=33.73 E-value=75 Score=28.94 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=33.6
Q ss_pred cEEEE--EcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 9 RQVVL--VPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 9 ~~il~--~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
.-|.+ ++.++.|-.--...|++.|.++|++|.+++-...
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 35666 7889999999999999999999999999998543
No 390
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=33.54 E-value=80 Score=26.43 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+.||.+=..|+-|-.+-|+.=|++|.++|-+|++-.-
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~v 41 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYV 41 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE-
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3688888999999999999999999999999998665
No 391
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=33.49 E-value=1.9e+02 Score=23.86 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=24.9
Q ss_pred CEEEeCCch-hHHHHHHHHhCCCeEEEeCchH
Q 016062 106 PCVIHDGIM-HCAEAVARHLKLPSIILYTLNP 136 (396)
Q Consensus 106 D~vI~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 136 (396)
.++|-.++. ++|..+|+++|+|.|.+.|+..
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 477766665 7788999999999999887743
No 392
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=33.49 E-value=7 Score=19.86 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=13.0
Q ss_pred chhhHHHHHHcCCceee
Q 016062 348 GWNSILESISEGVPMIC 364 (396)
Q Consensus 348 G~~s~~eal~~GvP~v~ 364 (396)
|.|++.-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888664
No 393
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=33.43 E-value=2.7e+02 Score=22.89 Aligned_cols=111 Identities=8% Similarity=-0.036 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhC-CCeEEEEeCCCCCCCCCCCCCceEEeCCC------------CCCCCC------CCCCCHHHHH
Q 016062 20 GHITPMLQLGTILHSR-GFSITVAHAQFNSPHASNHPDFTFLPLSD------------GSSSTP------KASDDFIDFM 80 (396)
Q Consensus 20 GH~~p~l~la~~L~~r-GH~Vt~~~~~~~~~~~~~~~gi~~~~~~~------------~~~~~~------~~~~~~~~~~ 80 (396)
-.+.-+..+++++.++ |.++.+..+....+.. .|.+|+...- .++... .-+.....+.
T Consensus 39 ~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl---~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~ 115 (183)
T PF02056_consen 39 ERLEIVERLARRMVEEAGADLKVEATTDRREAL---EGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFF 115 (183)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHH---TTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh---CCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHH
Confidence 3566677888888875 8888887773332222 3555544431 111111 1122333443
Q ss_pred HHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchhHH---HHHHHHhC-CCeEEEeCchHH
Q 016062 81 SNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMHCA---EAVARHLK-LPSIILYTLNPT 137 (396)
Q Consensus 81 ~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~---~~~A~~lg-iP~v~~~~~~~~ 137 (396)
..++ .-+.+.++.+++.+. -||+-+..+.++.+ ..+.+..+ ++.|.+..++..
T Consensus 116 ~alR--tipv~~~ia~~i~~~--~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~ 172 (183)
T PF02056_consen 116 RALR--TIPVMLDIARDIEEL--CPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQG 172 (183)
T ss_dssp HHHH--HHHHHHHHHHHHHHH--TTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHH
T ss_pred HHHh--hHHHHHHHHHHHHHh--CCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHH
Confidence 3332 224444555555554 59999999877665 34666777 999999988654
No 394
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.34 E-value=2.5e+02 Score=24.54 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=32.1
Q ss_pred CCcEEEeecCc---cccccCccccceeec---cchh-hHHHHHHcCCceeeecc
Q 016062 321 KRGCIVNWAPQ---RQVLAHSAVGGFWTH---CGWN-SILESISEGVPMICRSA 367 (396)
Q Consensus 321 ~~~~~~~~vp~---~~lL~~~~~~~~ItH---GG~~-s~~eal~~GvP~v~~P~ 367 (396)
.++....++++ ..+++.+++ ++.- .|.| ++.||+++|+|+|.-..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~ 308 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV 308 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC
Confidence 56777888882 336766766 6655 3554 46999999999988665
No 395
>PRK08303 short chain dehydrogenase; Provisional
Probab=33.33 E-value=85 Score=28.21 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.|+++++.++.| --.++|++|+++|++|+++.-
T Consensus 8 ~k~~lITGgs~G---IG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 8 GKVALVAGATRG---AGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CCEEEEeCCCch---HHHHHHHHHHHCCCEEEEEec
Confidence 367788877754 458999999999999888754
No 396
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.23 E-value=67 Score=28.08 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=33.5
Q ss_pred CccccceeeccchhhHHHHHH-cCCceeeecccCccccccccCCCCcHHHHHHHHHHHh
Q 016062 337 HSAVGGFWTHCGWNSILESIS-EGVPMICRSAFGDQKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 337 ~~~~~~~ItHGG~~s~~eal~-~GvP~v~~P~~~DQ~~na~~~~~~~~~~l~~~~~~il 394 (396)
++++ +|+=||-||+..|++ +++|++.+-...--+.. .....++.+++++++
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G~lGfl~-----~~~~~~~~~~l~~~~ 92 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAGRLGFLS-----SYTLEEIDRFLEDLK 92 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCCCCcccc-----ccCHHHHHHHHHHHH
Confidence 4566 999999999999987 57888877653322221 123455566666654
No 397
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=33.20 E-value=2.8e+02 Score=23.00 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC---C-CCCCCC--CC-CCCceEEeCCCCCCCCCCCCCCHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA---Q-FNSPHA--SN-HPDFTFLPLSDGSSSTPKASDDFIDFM 80 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~---~-~~~~~~--~~-~~gi~~~~~~~~~~~~~~~~~~~~~~~ 80 (396)
+.-|.+++..+.|-....+.+|-+-.-+|.+|-++-- . .+-+.. .. ..++.|...+..+.-.. .+...
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~---~~~~~-- 102 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWET---QDREA-- 102 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCC---cCcHH--
Confidence 3568888888889887777777666667777665432 1 000110 11 13567777775543222 11111
Q ss_pred HHHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchh
Q 016062 81 SNINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMH 115 (396)
Q Consensus 81 ~~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~ 115 (396)
+. ..+...+....+.+.+. ++|+||.|.+++
T Consensus 103 d~--~aa~~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 103 DI--AAAKAGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred HH--HHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 11 33344444444444433 799999999875
No 398
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=33.11 E-value=1e+02 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
+.||++++..+.| --.++|++|++.|+.|+...-.
T Consensus 5 ~~kv~lITGASSG---iG~A~A~~l~~~G~~vvl~aRR 39 (246)
T COG4221 5 KGKVALITGASSG---IGEATARALAEAGAKVVLAARR 39 (246)
T ss_pred CCcEEEEecCcch---HHHHHHHHHHHCCCeEEEEecc
Confidence 4578999887765 3578999999999998887763
No 399
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=33.05 E-value=3e+02 Score=23.26 Aligned_cols=106 Identities=11% Similarity=0.051 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHH---
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNIN--- 84 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 84 (396)
+..++|.|+... ...+++..+++||||.+-.|=...... .+|-...... . ...+....+....
T Consensus 22 pvT~ai~P~~~~-----~~~~a~~a~~~G~EvllhlPMep~~~~--~~gp~~L~~~------~-~~~~i~~~l~~al~~v 87 (213)
T PF04748_consen 22 PVTFAILPYAPY-----SREWAERARAAGHEVLLHLPMEPKGYK--DPGPGALLTG------M-SEEEIRKRLEAALARV 87 (213)
T ss_dssp TCEEEEETTSTT-----HHHHHHHHHHCT-EEEEEEEE--TTTT-----TT-B-TT------S--HHHHHHHHHHHHCCS
T ss_pred CeEEEECCCCCC-----hHHHHHHHHHcCCEEEEeCCCCCCCCC--CcccccccCC------C-CHHHHHHHHHHHHHHC
Confidence 356777776654 456778888999999998872221111 1221111111 0 0001111111111
Q ss_pred --------------HHchHHHHHHHHHHHhcCCCcCEEEeCCch---hHHHHHHHHhCCCeEEE
Q 016062 85 --------------LNCRAPLQEALTRMIAKQEDLPCVIHDGIM---HCAEAVARHLKLPSIIL 131 (396)
Q Consensus 85 --------------~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~---~~~~~~A~~lgiP~v~~ 131 (396)
..-...++.+++.+.+ -.+.+.|+.. ..+..+|+++|+|++.-
T Consensus 88 p~a~GvnNhmGS~~T~~~~~m~~vl~~l~~----~gl~FvDS~T~~~s~a~~~A~~~gvp~~~r 147 (213)
T PF04748_consen 88 PGAVGVNNHMGSRFTSDREAMRWVLEVLKE----RGLFFVDSRTTPRSVAPQVAKELGVPAARR 147 (213)
T ss_dssp TT-SEEEEEE-CCHHC-HHHHHHHHHHHHH----TT-EEEE-S--TT-SHHHHHHHCT--EEE-
T ss_pred CCcEEEecCCCccccCCHHHHHHHHHHHHH----cCCEEEeCCCCcccHHHHHHHHcCCCEEee
Confidence 1124455567777764 4899998876 34688999999999884
No 400
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=33.02 E-value=86 Score=25.59 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+..++++-.+|.|--.-..++++++.++|+.|.|+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 5678888888999888899999999999999998876
No 401
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=32.99 E-value=56 Score=23.93 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 016062 23 TPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 23 ~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.|.+.|+++|.++|.+|.+.=|
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 6899999999999999887766
No 402
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=32.92 E-value=2.1e+02 Score=21.51 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=30.9
Q ss_pred hhhhhccCCCCeEEEEEcCccccC-CHHHHHHHHHHHHhCCCCeEEE
Q 016062 251 CIEWLDKQTQHSVIYVSFGSIALT-GEKELAEMAWGLANSKQPFLWV 296 (396)
Q Consensus 251 l~~~l~~~~~~~vv~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~ 296 (396)
..+|+... -+++|.|..... ++..+..+++.+.+.+.-.+..
T Consensus 36 ~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i 78 (123)
T PF07905_consen 36 PSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGI 78 (123)
T ss_pred HHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 56888752 377788887765 6677888999999988765544
No 403
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.85 E-value=88 Score=21.91 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=27.6
Q ss_pred cEEEEEcCCCC--CCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQ--GHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~--GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
-+|+++|.... .+..-...++..|.+.|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 36888887653 4566789999999999999987543
No 404
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=32.72 E-value=74 Score=31.14 Aligned_cols=26 Identities=8% Similarity=0.341 Sum_probs=21.7
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
+||+||.+.. ...+|+++|||++.++
T Consensus 374 ~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECch---hhHHHHHhCCCEEEee
Confidence 7999999974 5557899999998865
No 405
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=32.67 E-value=71 Score=30.29 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCC--CC-HHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 8 CRQVVLVPIPLQ--GH-ITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 8 ~~~il~~~~~~~--GH-~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
.++|+++|.-+. .+ -....+|++.|.+||.+|.|..++-
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 678999985543 23 2458899999999999999999953
No 406
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=32.67 E-value=64 Score=26.56 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCC
Q 016062 23 TPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLS 63 (396)
Q Consensus 23 ~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~ 63 (396)
.-+..+|+.|.+.|.++. .+. .......+ .|+....+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT~-GTAk~L~e-~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-STG-GTAKFLKE-AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-Ecc-HHHHHHHH-cCCeEEEhh
Confidence 347899999999999973 443 44433333 577766665
No 407
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=32.50 E-value=47 Score=29.17 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC-----CCCCCCCCceEEeCCCCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS-----PHASNHPDFTFLPLSDGSS 67 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~-----~~~~~~~gi~~~~~~~~~~ 67 (396)
+-++++..+.| =-.++|+.|++|||+|+++.-...+ .......++....++.++.
T Consensus 7 ~~~lITGASsG---IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs 66 (265)
T COG0300 7 KTALITGASSG---IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLS 66 (265)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCC
Confidence 35556655543 2478999999999999998874332 1222224566666664443
No 408
>PRK13054 lipid kinase; Reviewed
Probab=32.49 E-value=2.1e+02 Score=25.62 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=0.0
Q ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhHHHHhcCCcEEEeecCccccccCccc
Q 016062 261 HSVIYVSFGSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSFKETVEKRGCIVNWAPQRQVLAHSAV 340 (396)
Q Consensus 261 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp~~~lL~~~~~ 340 (396)
+.+.+|--|... ....+..++..+.+.+..+.+......... ..+ -+.......++
T Consensus 4 ~~~~~i~N~~~~--~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a--------~~~--------------a~~~~~~~~d~ 59 (300)
T PRK13054 4 PKSLLILNGKSA--GNEELREAVGLLREEGHTLHVRVTWEKGDA--------ARY--------------VEEALALGVAT 59 (300)
T ss_pred ceEEEEECCCcc--chHHHHHHHHHHHHcCCEEEEEEecCCCcH--------HHH--------------HHHHHHcCCCE
Q ss_pred cceeeccchhhHHHHHHc--------CCceeeecc
Q 016062 341 GGFWTHCGWNSILESISE--------GVPMICRSA 367 (396)
Q Consensus 341 ~~~ItHGG~~s~~eal~~--------GvP~v~~P~ 367 (396)
+|..||=||+.|++.. .+|+-++|.
T Consensus 60 --vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 60 --VIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred --EEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
No 409
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=32.40 E-value=99 Score=28.69 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 4 QGHRCRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 4 m~~~~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|++ +++|++. ++.|. --..|++.|.++||+|+.+.-
T Consensus 18 ~~~-~~~IlVt--GgtGf--IG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 18 PSE-KLRICIT--GAGGF--IASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCC-CCEEEEE--CCccH--HHHHHHHHHHhCCCEEEEEEe
Confidence 344 7888876 33344 346789999999999998874
No 410
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=32.34 E-value=1.1e+02 Score=25.42 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=27.3
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEEeCch
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~~ 135 (396)
+..+||+|.-.-.+..-|++.|||+..+....
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 68999999867778999999999999886553
No 411
>PLN00016 RNA-binding protein; Provisional
Probab=32.29 E-value=59 Score=30.23 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=24.9
Q ss_pred CcEEEEEcC--CCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPI--PLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~--~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
.++|+++.. ++.|. --..|+++|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~--iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAF--IGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCcee--EhHHHHHHHHHCCCEEEEEecC
Confidence 356877721 23333 3467889999999999998864
No 412
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.18 E-value=2.7e+02 Score=22.47 Aligned_cols=95 Identities=13% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCC------CCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHHHH
Q 016062 25 MLQLGTILHSRGFSITVAHAQFNS------PHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRAPLQEALTRM 98 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~~~~~------~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 98 (396)
+..+.+...++|..|.++...+.. .....+++++++...+.+- .....+++++.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-------------------~~~~~~~i~~~I 97 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-------------------DEEEEEAIINRI 97 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-------------------ChhhHHHHHHHH
Q ss_pred HhcCCCcCEEEeCCch----hHHHHHHHHhCCCeEEEeCchHHHHHH
Q 016062 99 IAKQEDLPCVIHDGIM----HCAEAVARHLKLPSIILYTLNPTNLLT 141 (396)
Q Consensus 99 ~~~~~~~D~vI~D~~~----~~~~~~A~~lgiP~v~~~~~~~~~~~~ 141 (396)
.++ +||+|++-..+ .|.....+.++.+ +.+..+..+.+..
T Consensus 98 ~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d~~a 141 (172)
T PF03808_consen 98 NAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFDFLA 141 (172)
T ss_pred HHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhhhhc
No 413
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=32.16 E-value=1.2e+02 Score=26.85 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+..|+++..+|-|--.-...||..|+++|++|.++..+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3456677777889999999999999999999999998654
No 414
>PRK06114 short chain dehydrogenase; Provisional
Probab=32.14 E-value=91 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=24.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|+++++.++.| --..+|++|+++|++|+++..
T Consensus 9 k~~lVtG~s~g---IG~~ia~~l~~~G~~v~~~~r 40 (254)
T PRK06114 9 QVAFVTGAGSG---IGQRIAIGLAQAGADVALFDL 40 (254)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 56677766543 568899999999999988765
No 415
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=31.99 E-value=4e+02 Score=24.33 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=37.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGS 66 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~ 66 (396)
.++++.. -.|...-++..++..+++|..|+.++.........+..+...+.+|.+.
T Consensus 80 dlvI~iS-~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~~~~~~~i~ip~~~ 135 (337)
T PRK08674 80 TLVIAVS-YSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAKEHGLPVIIVPGGY 135 (337)
T ss_pred cEEEEEc-CCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHHhcCCeEEEeCCCC
Confidence 3444443 4478888999999999999998888864322222232477788888554
No 416
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=31.93 E-value=50 Score=27.78 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCC
Q 016062 26 LQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 26 l~la~~L~~rGH~Vt~~~~~~ 46 (396)
..||++|++.||+|++.+...
T Consensus 14 ~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCC
Confidence 578999999999999997743
No 417
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.90 E-value=86 Score=27.17 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=23.4
Q ss_pred EEEEEcCC--CCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIP--LQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~--~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|+++++.. +.| --.++|++|+++|++|++..-
T Consensus 8 k~~lItGa~~s~G---IG~a~a~~la~~G~~v~l~~r 41 (256)
T PRK07889 8 KRILVTGVITDSS---IAFHVARVAQEQGAEVVLTGF 41 (256)
T ss_pred CEEEEeCCCCcch---HHHHHHHHHHHCCCEEEEecC
Confidence 56667766 333 456889999999999887653
No 418
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=31.82 E-value=56 Score=29.21 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+||+++-.++.| ..+|..|++.||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 468888666654 5678899999999999887
No 419
>PRK06194 hypothetical protein; Provisional
Probab=31.75 E-value=90 Score=27.46 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=21.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.++++.++ |-+ -..++++|+++|++|+++..
T Consensus 8 ~vlVtGas-ggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 8 VAVITGAA-SGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred EEEEeCCc-cHH--HHHHHHHHHHCCCEEEEEeC
Confidence 44555544 322 56789999999999988765
No 420
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=31.71 E-value=1.4e+02 Score=25.47 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 20 GHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 20 GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+.+.|.-.+-.+|++.|.+|++++....+
T Consensus 23 ye~~pA~pv~~el~d~G~~Vi~~SSKT~a 51 (274)
T COG3769 23 YEWQPAAPVLLELKDAGVPVILCSSKTRA 51 (274)
T ss_pred CCCCccchHHHHHHHcCCeEEEeccchHH
Confidence 68999999999999999999999986543
No 421
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=31.67 E-value=1.4e+02 Score=24.97 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCC--CCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQ--GHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~--GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
..||++++.++- |+ -...|+.|..+|++|+++.....
T Consensus 49 ~~~v~vlcG~GnNGGD---G~VaAR~L~~~G~~V~v~~~~~~ 87 (203)
T COG0062 49 ARRVLVLCGPGNNGGD---GLVAARHLKAAGYAVTVLLLGDP 87 (203)
T ss_pred CCEEEEEECCCCccHH---HHHHHHHHHhCCCceEEEEeCCC
Confidence 357999998875 44 45789999999999999887433
No 422
>PRK03202 6-phosphofructokinase; Provisional
Probab=31.66 E-value=39 Score=30.65 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=34.9
Q ss_pred cccCccccceeeccchhhHHHHHH---cCCceeeecccCccccccc
Q 016062 334 VLAHSAVGGFWTHCGWNSILESIS---EGVPMICRSAFGDQKVNAS 376 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~---~GvP~v~~P~~~DQ~~na~ 376 (396)
-|+.-++.++|.=||.+|+.-|.. +|+|+|++|-+.|-....-
T Consensus 88 ~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTIDNDl~gt 133 (320)
T PRK03202 88 NLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTIDNDIAGT 133 (320)
T ss_pred HHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEecccccCCCCCC
Confidence 455667888999999999987755 5999999999998765543
No 423
>PRK12829 short chain dehydrogenase; Provisional
Probab=31.63 E-value=98 Score=26.68 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+++++. .+ .|.+ -..+++.|.++||+|+.+.-
T Consensus 12 ~~vlIt-Ga-~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 12 LRVLVT-GG-ASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CEEEEe-CC-CCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 455544 33 3555 47889999999999877765
No 424
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=31.54 E-value=90 Score=27.33 Aligned_cols=36 Identities=11% Similarity=0.011 Sum_probs=30.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
.|++.-=+|-|--.-...||..|+++|++|.++=..
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 566765667799999999999999999999888543
No 425
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=31.46 E-value=69 Score=30.80 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=43.9
Q ss_pred eecCccc---cccCccccceee---ccchh-hHHHHHHcCCc----eeeecccC--ccccccccCCCCcHHHHHHHHHHH
Q 016062 327 NWAPQRQ---VLAHSAVGGFWT---HCGWN-SILESISEGVP----MICRSAFG--DQKVNASRKGGSSYNLLNELVDHI 393 (396)
Q Consensus 327 ~~vp~~~---lL~~~~~~~~It---HGG~~-s~~eal~~GvP----~v~~P~~~--DQ~~na~~~~~~~~~~l~~~~~~i 393 (396)
..+++.+ ++.-+++ |+. +=|+| ++.||+++|+| +|+--+.+ ++..+|-.-+-.+..++.++|.++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~~gllVnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELNGALLVNPYDIDGMADAIARA 419 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhCCcEEECCCCHHHHHHHHHHH
Confidence 4556644 5778887 774 44654 78899999999 65544433 444455444445677788888777
Q ss_pred hc
Q 016062 394 MS 395 (396)
Q Consensus 394 l~ 395 (396)
|+
T Consensus 420 L~ 421 (456)
T TIGR02400 420 LT 421 (456)
T ss_pred Hc
Confidence 64
No 426
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=31.46 E-value=80 Score=27.58 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
+|+|+.=||-|--.-...||..|+++|++|.++=...
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4777766777999999999999999999999886543
No 427
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=31.40 E-value=2.9e+02 Score=22.61 Aligned_cols=100 Identities=6% Similarity=-0.007 Sum_probs=55.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC-C--CCC---CCCCCCceEEeCCCCCCCCCCCCCCHHHHHH
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF-N--SPH---ASNHPDFTFLPLSDGSSSTPKASDDFIDFMS 81 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~-~--~~~---~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 81 (396)
+.-|-+++..+.|-....+.+|-+=+-+|-+|.++--=. . ... ....+++.+.....++.-.. .+...
T Consensus 21 ~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~---~~~~~--- 94 (178)
T PRK07414 21 EGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDT---PHLDE--- 94 (178)
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeC---CCcCH---
Confidence 678899999999988887777777777777777764311 1 110 11224677777664322111 11110
Q ss_pred HHHHHchHHHHHHHHHHHhcCCCcCEEEeCCchh
Q 016062 82 NINLNCRAPLQEALTRMIAKQEDLPCVIHDGIMH 115 (396)
Q Consensus 82 ~~~~~~~~~l~~~~~~l~~~~~~~D~vI~D~~~~ 115 (396)
.....+...+....+.+. .. ++|+||-|....
T Consensus 95 ~~~~~~~~~~~~a~~~l~-~~-~~dlvVLDEi~~ 126 (178)
T PRK07414 95 SEKKALQELWQYTQAVVD-EG-RYSLVVLDELSL 126 (178)
T ss_pred HHHHHHHHHHHHHHHHHh-CC-CCCEEEEehhHH
Confidence 011222333333333333 33 799999998653
No 428
>PRK05876 short chain dehydrogenase; Provisional
Probab=31.35 E-value=92 Score=27.35 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|.++++..+ |.+ -.++|++|+++|++|+++..
T Consensus 7 k~vlVTGas-~gI--G~ala~~La~~G~~Vv~~~r 38 (275)
T PRK05876 7 RGAVITGGA-SGI--GLATGTEFARRGARVVLGDV 38 (275)
T ss_pred CEEEEeCCC-chH--HHHHHHHHHHCCCEEEEEeC
Confidence 466666555 444 47789999999999887654
No 429
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=31.26 E-value=52 Score=34.36 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAH 43 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~ 43 (396)
+|+|+-.++.| +.+||+.|+++|++|+..=
T Consensus 6 ~i~viG~G~sG----~salA~~L~~~G~~V~~sD 35 (809)
T PRK14573 6 FYHFIGIGGIG----MSALAHILLDRGYSVSGSD 35 (809)
T ss_pred eEEEEEecHHh----HHHHHHHHHHCCCeEEEEC
Confidence 48888888766 7788999999999998643
No 430
>PRK08339 short chain dehydrogenase; Provisional
Probab=31.25 E-value=1e+02 Score=26.78 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.|+++++..+.| --.++|++|+++|++|++..-
T Consensus 8 ~k~~lItGas~g---IG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 8 GKLAFTTASSKG---IGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CCEEEEeCCCCc---HHHHHHHHHHHCCCEEEEEeC
Confidence 457777766542 357799999999999888754
No 431
>PF12496 BNIP2: Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2; InterPro: IPR022181 This domain family is found in eukaryotes, and is typically between 119 and 133 amino acids in length. There is a conserved HGGY sequence motif. This family is Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. It interacts with pro- and anti- apoptotic molecules in the cell.
Probab=31.23 E-value=22 Score=27.12 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=14.4
Q ss_pred eecCccccccCccccceeeccch
Q 016062 327 NWAPQRQVLAHSAVGGFWTHCGW 349 (396)
Q Consensus 327 ~~vp~~~lL~~~~~~~~ItHGG~ 349 (396)
.+|+...|=+..+ +|+|||+
T Consensus 104 ~rIDMkvIEPYkr---ViSHGGY 123 (127)
T PF12496_consen 104 HRIDMKVIEPYKR---VISHGGY 123 (127)
T ss_pred EEEeeEeccccee---eeccCCc
Confidence 4466666666666 8999997
No 432
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=53 Score=31.59 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+||+|+-.+- .-++-|.+|+++||+||++-.....
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEeccCcc
Confidence 3566665543 3478899999999999999875443
No 433
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.14 E-value=3e+02 Score=25.89 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHh----CCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHS----RGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~----rGH~Vt~~~~~~~~ 48 (396)
+..|+++-..|.|-..-+..||..|.. +|+.|.+++.+.++
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 356777777788999999999998874 58999999996543
No 434
>PRK07576 short chain dehydrogenase; Provisional
Probab=31.07 E-value=1.1e+02 Score=26.62 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeC
Q 016062 24 PMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 24 p~l~la~~L~~rGH~Vt~~~~ 44 (396)
--..++++|+++||+|+++.-
T Consensus 21 IG~~la~~l~~~G~~V~~~~r 41 (264)
T PRK07576 21 INLGIAQAFARAGANVAVASR 41 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeC
Confidence 346789999999999888764
No 435
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.96 E-value=48 Score=29.71 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=26.6
Q ss_pred ccccCccccceeeccchhhHHHHHH----cCCceeeeccc
Q 016062 333 QVLAHSAVGGFWTHCGWNSILESIS----EGVPMICRSAF 368 (396)
Q Consensus 333 ~lL~~~~~~~~ItHGG~~s~~eal~----~GvP~v~~P~~ 368 (396)
++...+++ +|+=||=||+..|.+ .++|++++-..
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G 101 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG 101 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC
Confidence 34445677 999999999999975 37899988763
No 436
>PRK04328 hypothetical protein; Provisional
Probab=30.95 E-value=3.5e+02 Score=23.39 Aligned_cols=40 Identities=15% Similarity=-0.136 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
.-+++.-.|+.|--.-.+.++.+-+++|+.+.+++.+...
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHP 63 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCH
Confidence 3566677778899888888777777889999999986544
No 437
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=30.90 E-value=74 Score=31.11 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=21.8
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
++|++|.+.. +..+|+++|||++.+.
T Consensus 437 ~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 437 PVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred CCCEEEECch---HHHHHHHcCCCEEEec
Confidence 7999998864 6778999999998864
No 438
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.86 E-value=1.1e+02 Score=26.04 Aligned_cols=32 Identities=9% Similarity=-0.005 Sum_probs=21.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
.++++..+ | .--..+++.|+++|++|+++.-.
T Consensus 9 ~vlVtG~s-g--~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 9 NALITGAG-R--GIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred EEEEEcCC-c--hHHHHHHHHHHHCCCEEEEEeCC
Confidence 34444433 3 34567889999999999887653
No 439
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=30.65 E-value=87 Score=27.65 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
+|+|+-=+|-|--.-...||..|+++|++|.++=-+
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 378886677799999999999999999998888543
No 440
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=30.55 E-value=5e+02 Score=25.01 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=21.8
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEE
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIIL 131 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~ 131 (396)
+||++|.... ...+|+++|+|++.+
T Consensus 381 ~~dliig~s~---~~~~A~~~gip~~~~ 405 (454)
T cd01973 381 ELDLILGHSK---GRYIAIDNNIPMVRV 405 (454)
T ss_pred CCCEEEECCc---cHHHHHHcCCCEEEe
Confidence 5999998874 688999999999886
No 441
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=30.52 E-value=1.2e+02 Score=24.69 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCe--EEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFS--ITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~--Vt~~~~ 44 (396)
|||+|+..++. ..+..+.++|.+++|+ ++.+.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 57888866653 5677888999999998 555554
No 442
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=30.36 E-value=1e+02 Score=27.00 Aligned_cols=34 Identities=9% Similarity=-0.057 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+.+.++++..+.| --.+++++|+++|++|+++..
T Consensus 9 ~~k~vlVtGas~g---iG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 9 KGKVAVITGGGGV---LGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CCCEEEEeCCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 3456666665532 348899999999999888765
No 443
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=30.21 E-value=71 Score=25.01 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC-CCeEEE
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSR-GFSITV 41 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~r-GH~Vt~ 41 (396)
++.+++-+..|..-.++||..|.+. |.+|.+
T Consensus 4 fI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 4 FISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 4566677778999999999999999 999874
No 444
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=30.16 E-value=1.1e+02 Score=26.99 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+||+++-=++-|-=.-...|+-+|+++|++|..+..++..
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKA 40 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSS
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCC
Confidence 4799999999999999999999999999999999986544
No 445
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.99 E-value=70 Score=30.37 Aligned_cols=26 Identities=8% Similarity=-0.053 Sum_probs=22.2
Q ss_pred CcCEEEeCCchhHHHHHHHHhCCCeEEEe
Q 016062 104 DLPCVIHDGIMHCAEAVARHLKLPSIILY 132 (396)
Q Consensus 104 ~~D~vI~D~~~~~~~~~A~~lgiP~v~~~ 132 (396)
+||++|.... ...+|+++|||++.+.
T Consensus 369 ~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 369 KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 7999999875 6678999999998764
No 446
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.95 E-value=47 Score=29.90 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=34.6
Q ss_pred cccCccccceeeccchhhHHHHHHc----CCceeeecccCccccccccCCCCcHHHHHHHHHHHh
Q 016062 334 VLAHSAVGGFWTHCGWNSILESISE----GVPMICRSAFGDQKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~~~~l~~~~~~il 394 (396)
+...+++ +|+=||=||+..|.+. ++|++++-...=-+.. ..+..++.+++++|+
T Consensus 65 ~~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G~lGFLt-----~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 65 FDSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTGHLGFLT-----EAYLNQLDEAIDQVL 122 (305)
T ss_pred cccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCCCCcccc-----cCCHHHHHHHHHHHH
Confidence 3344566 9999999999999875 7899998653211111 123355566666554
No 447
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.85 E-value=1.1e+02 Score=26.55 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=25.2
Q ss_pred CccCCCCCcEEEEEcCC-CCCCHHHHHHHHHHHHhCCCeEEEEe
Q 016062 1 MEKQGHRCRQVVLVPIP-LQGHITPMLQLGTILHSRGFSITVAH 43 (396)
Q Consensus 1 ~~~m~~~~~~il~~~~~-~~GH~~p~l~la~~L~~rGH~Vt~~~ 43 (396)
|+.|.. |+++++.. +.+-+ -.++|++|+++|.+|++..
T Consensus 1 ~~~~~~---k~~lITGa~~~~GI--G~a~a~~l~~~G~~v~~~~ 39 (261)
T PRK08690 1 MGFLQG---KKILITGMISERSI--AYGIAKACREQGAELAFTY 39 (261)
T ss_pred CCccCC---cEEEEECCCCCCcH--HHHHHHHHHHCCCEEEEEc
Confidence 554443 46677765 22222 3789999999999988753
No 448
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=29.78 E-value=1.1e+02 Score=28.36 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred CccccCCHHHHHHHHHHHHhCCCCeEEEECCCCCCCCCCCCCCchhH------------HHHhcCCcEEE--eecCccc-
Q 016062 269 GSIALTGEKELAEMAWGLANSKQPFLWVLRPGSADGLDPTDLLPDSF------------KETVEKRGCIV--NWAPQRQ- 333 (396)
Q Consensus 269 Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~------------~~~~~~~~~~~--~~vp~~~- 333 (396)
.|........+..+++++++.+.++...+..+. ....+ .....+++.+. .|+||.+
T Consensus 187 vslF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~---------~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~y 257 (374)
T PF10093_consen 187 VSLFCYENAALASLLDAWAASPKPVHLLVPEGR---------ALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDY 257 (374)
T ss_pred EEEEeCCchHHHHHHHHHhcCCCCeEEEecCCc---------cHHHHHHHhccccccCccccccCCeEEEECCCCCHHHH
Q ss_pred --cccCccccceeeccchh------hHHHHHHcCCcee
Q 016062 334 --VLAHSAVGGFWTHCGWN------SILESISEGVPMI 363 (396)
Q Consensus 334 --lL~~~~~~~~ItHGG~~------s~~eal~~GvP~v 363 (396)
+|--+++ | |+..|..+|+|.|
T Consensus 258 D~LLw~cD~---------NfVRGEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 258 DRLLWACDF---------NFVRGEDSFVRAQWAGKPFV 286 (374)
T ss_pred HHHHHhCcc---------ceEecchHHHHHHHhCCCce
No 449
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.78 E-value=1.1e+02 Score=23.48 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=41.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC---CCCCceEEeCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHAS---NHPDFTFLPLS 63 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~---~~~gi~~~~~~ 63 (396)
+.||++...++-+|-.----++..|...|++|+........+.+. ...+..++.++
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iS 60 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVS 60 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 468999999999999999999999999999999877643222211 11455555554
No 450
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.49 E-value=1.2e+02 Score=26.16 Aligned_cols=33 Identities=12% Similarity=-0.047 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.|+++++..+. ---.++|++|+++|++|+++..
T Consensus 8 ~k~~lItGas~---gIG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 8 GKVAIITGCNT---GLGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CCEEEEeCCCc---hHHHHHHHHHHHCCCEEEEecC
Confidence 35677776653 3457889999999999987644
No 451
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=29.46 E-value=1e+02 Score=24.07 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=27.7
Q ss_pred EEEEc-CCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 11 VVLVP-IPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 11 il~~~-~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
|++++ .++-|=-.-...+|..|+++|++|.++-.+...
T Consensus 3 i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~ 41 (157)
T PF13614_consen 3 IAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFS 41 (157)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 44554 667788888999999999999998888775443
No 452
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=29.33 E-value=1.5e+02 Score=24.52 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=23.0
Q ss_pred CcCEEEeCCc--hhHHHHHHHHhCCCeEEEeC
Q 016062 104 DLPCVIHDGI--MHCAEAVARHLKLPSIILYT 133 (396)
Q Consensus 104 ~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~ 133 (396)
++|+|+.=.. .+.+..+|..+|+|++...-
T Consensus 50 ~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 50 GITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 6999984332 26678899999999999743
No 453
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=29.22 E-value=80 Score=29.66 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=34.3
Q ss_pred cccCccccceeeccchhhHHHHHH-------c--CCceeeecccCccccccc
Q 016062 334 VLAHSAVGGFWTHCGWNSILESIS-------E--GVPMICRSAFGDQKVNAS 376 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~-------~--GvP~v~~P~~~DQ~~na~ 376 (396)
.|+.-++.++|.=||-+|..-|.. + |+|+|++|=+.|-....-
T Consensus 107 ~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~t 158 (403)
T PRK06555 107 RLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPI 158 (403)
T ss_pred HHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCc
Confidence 466778889999999999876633 3 899999999998766543
No 454
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=29.17 E-value=1.1e+02 Score=26.37 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=22.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 11 VVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 11 il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.++++..+ |.+ -..+++.|+++|++|+++..
T Consensus 8 ~vlItGas-~~i--G~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 8 VALLTGAA-SGI--GEAVAERYLAEGARVVIADI 38 (257)
T ss_pred EEEEeCCC-chH--HHHHHHHHHHcCCEEEEEcC
Confidence 45555443 433 47899999999999888754
No 455
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.14 E-value=72 Score=28.72 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
++||+|+-.+..| ..+|+.|.++||+|++....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 6789988666544 57899999999999988763
No 456
>PLN02293 adenine phosphoribosyltransferase
Probab=29.11 E-value=1.8e+02 Score=23.96 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=21.7
Q ss_pred CcCEEEeCCc--hhHHHHHHHHhCCCeEEE
Q 016062 104 DLPCVIHDGI--MHCAEAVARHLKLPSIIL 131 (396)
Q Consensus 104 ~~D~vI~D~~--~~~~~~~A~~lgiP~v~~ 131 (396)
++|+|+.=.. ...+..+|..+|+|++.+
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 6899885432 256889999999998875
No 457
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=28.99 E-value=87 Score=30.09 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.++|+++-.++.| +..+|+.|+++|++|+..=.
T Consensus 7 ~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D~ 39 (461)
T PRK00421 7 IKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSDL 39 (461)
T ss_pred CCEEEEEEEchhh----HHHHHHHHHhCCCeEEEECC
Confidence 5689999888766 45589999999999977543
No 458
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=28.88 E-value=2.6e+02 Score=27.63 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhcCCCcCEEEeCCchhHHHHHHHHhCCCeEEEeCc
Q 016062 88 RAPLQEALTRMIAKQEDLPCVIHDGIMHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 88 ~~~l~~~~~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgiP~v~~~~~ 134 (396)
....+..++++++. ++++||.|.. +...|.++|++.+...+.
T Consensus 141 ~~e~~~~v~~lk~~--G~~~vvG~~~---~~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 141 EEDARGQINELKAN--GIEAVVGAGL---ITDLAEEAGMTGIFIYSA 182 (538)
T ss_pred HHHHHHHHHHHHHC--CCCEEEcCch---HHHHHHHhCCceEEecCH
Confidence 34555678888776 6999999965 578999999999998754
No 459
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.86 E-value=1.1e+02 Score=29.25 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
++++++- -|. .- +++|+.|+++|++|+++...
T Consensus 6 k~v~iiG---~g~-~G-~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVG---AGV-SG-LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEEC---CCH-HH-HHHHHHHHHCCCEEEEEeCC
Confidence 5676663 244 33 49999999999999998764
No 460
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=28.79 E-value=87 Score=30.21 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNSP 49 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~ 49 (396)
++||++...++. -.+=...|.++|.++||+|.++.++....
T Consensus 70 ~k~IllgVtGsI-Aayka~~lvr~L~k~G~~V~VvmT~sA~~ 110 (475)
T PRK13982 70 SKRVTLIIGGGI-AAYKALDLIRRLKERGAHVRCVLTKAAQQ 110 (475)
T ss_pred CCEEEEEEccHH-HHHHHHHHHHHHHhCcCEEEEEECcCHHH
Confidence 477888777664 45578999999999999999999864433
No 461
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=28.73 E-value=99 Score=25.91 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEE
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITV 41 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~ 41 (396)
...+++-+...|-...+..+|+.|+++|+.|.+
T Consensus 14 ~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 14 RPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEe
Confidence 455566667778778899999999999976655
No 462
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.72 E-value=82 Score=28.64 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
.+||+|+-.+..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 4679998766655 57899999999999998874
No 463
>PRK12744 short chain dehydrogenase; Provisional
Probab=28.62 E-value=1.2e+02 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+.++++..+.| --..+|+.|+++|++|.++..
T Consensus 9 k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 9 KVVLIAGGAKN---LGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCcEEEEec
Confidence 34555554433 457799999999999776654
No 464
>PRK14071 6-phosphofructokinase; Provisional
Probab=28.62 E-value=47 Score=30.73 Aligned_cols=43 Identities=14% Similarity=0.049 Sum_probs=34.3
Q ss_pred cccCccccceeeccchhhHHHHHH----cCCceeeecccCccccccc
Q 016062 334 VLAHSAVGGFWTHCGWNSILESIS----EGVPMICRSAFGDQKVNAS 376 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~ 376 (396)
.|..-++.++|.=||.+|+.-|.. .|+|+|++|-+.|-....-
T Consensus 102 ~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~t 148 (360)
T PRK14071 102 GYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGAT 148 (360)
T ss_pred HHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCc
Confidence 456668888999999999866643 4999999999988766554
No 465
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=28.46 E-value=1.3e+02 Score=27.37 Aligned_cols=40 Identities=8% Similarity=0.082 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
.+.|++..-++.|--.-...||..|+++|++|.++-.+..
T Consensus 31 ~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~ 70 (329)
T cd02033 31 TQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPK 70 (329)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 4567777777888989999999999999999999976433
No 466
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.37 E-value=70 Score=27.72 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCcCEEEeCCch-----hHHHHHHHHhCCCeEEEe
Q 016062 93 EALTRMIAKQEDLPCVIHDGIM-----HCAEAVARHLKLPSIILY 132 (396)
Q Consensus 93 ~~~~~l~~~~~~~D~vI~D~~~-----~~~~~~A~~lgiP~v~~~ 132 (396)
.++++. +.|+||+-... ..=..+|+.||||+|.+-
T Consensus 190 all~q~-----~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 190 ALLEQY-----RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHh-----CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 466666 79999987643 222679999999999974
No 467
>PRK04148 hypothetical protein; Provisional
Probab=28.35 E-value=61 Score=25.09 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
+++|+.+-.+ .| ..+|+.|++.||+|+.+=..+.
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHH
Confidence 4678888777 33 3468889999999998766443
No 468
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=28.34 E-value=1.2e+02 Score=28.52 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 016062 24 PMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 24 p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
--.++|++|.++|++|+++..+.
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCc
Confidence 35789999999999999987643
No 469
>PHA02857 monoglyceride lipase; Provisional
Probab=28.25 E-value=96 Score=27.02 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
++-++++.++..+|..-+..+++.|.++|+.|..+=.
T Consensus 24 ~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~ 60 (276)
T PHA02857 24 PKALVFISHGAGEHSGRYEELAENISSLGILVFSHDH 60 (276)
T ss_pred CCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccC
Confidence 4567888888778999999999999999998776644
No 470
>PRK07806 short chain dehydrogenase; Provisional
Probab=28.25 E-value=1.3e+02 Score=25.57 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 016062 25 MLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~ 44 (396)
-..++++|.++||+|+.+.-
T Consensus 19 G~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 19 GADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 36789999999999987654
No 471
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=28.24 E-value=1.4e+02 Score=28.51 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=35.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+..|+++-.++.|-..-...||..|.++|+.|.++..+...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 45677777889999999999999999999999999986544
No 472
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=28.15 E-value=52 Score=30.35 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=23.3
Q ss_pred Cccccceeeccchhh---HHHHHHcCCceeee
Q 016062 337 HSAVGGFWTHCGWNS---ILESISEGVPMICR 365 (396)
Q Consensus 337 ~~~~~~~ItHGG~~s---~~eal~~GvP~v~~ 365 (396)
+|++ +|++||+=| +..|...|+|+++.
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 5667 999999997 89999999999863
No 473
>PRK13236 nitrogenase reductase; Reviewed
Probab=28.08 E-value=1e+02 Score=27.54 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQF 46 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~ 46 (396)
.|.|.-=+|-|--.....||..|+++|++|.++=.+.
T Consensus 8 ~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 8 QIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 3555555677899999999999999999999985543
No 474
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=28.06 E-value=1e+02 Score=23.18 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
+..|++++++.. +...+..+++|.+.|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 567999998886 57789999999999999999877
No 475
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=27.96 E-value=1.6e+02 Score=26.00 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.8
Q ss_pred CcCEEEeCCc--hhHHHHHHHHhCCCeEEEeC
Q 016062 104 DLPCVIHDGI--MHCAEAVARHLKLPSIILYT 133 (396)
Q Consensus 104 ~~D~vI~D~~--~~~~~~~A~~lgiP~v~~~~ 133 (396)
++|+|+.=.. .+.|..+|..||+|++...-
T Consensus 128 ~iD~VvgvetkGIpLA~avA~~L~vp~vivRK 159 (268)
T TIGR01743 128 EIDAVMTVATKGIPLAYAVASVLNVPLVIVRK 159 (268)
T ss_pred CCCEEEEEccchHHHHHHHHHHHCCCEEEEEE
Confidence 6999986443 26688899999999999743
No 476
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.95 E-value=2.5e+02 Score=24.64 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCCcCEEEeCCch--hHHHHHHHHhCCCeEEEeCch
Q 016062 90 PLQEALTRMIAKQEDLPCVIHDGIM--HCAEAVARHLKLPSIILYTLN 135 (396)
Q Consensus 90 ~l~~~~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 135 (396)
.+.++.+.+++. +..+|+++... -.+..+|+.+|+|.+.+.+..
T Consensus 205 ~l~~l~~~ik~~--~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~ 250 (266)
T cd01018 205 DLKRLIDLAKEK--GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLA 250 (266)
T ss_pred HHHHHHHHHHHc--CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcH
Confidence 444566666555 79999999866 334579999999998887654
No 477
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=27.89 E-value=77 Score=26.45 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVA 42 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~ 42 (396)
+++|++.-++. --..+|+.|.+.||+|++.
T Consensus 28 gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 28 GKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCEEEEECCCH-----HHHHHHHHHHHCCCEEEEE
Confidence 46788877653 4478999999999999854
No 478
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=27.74 E-value=89 Score=27.83 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
||.|+-.+..| .++|+.|.++||+|++..-...+
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~~k 35 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTPEK 35 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCChhh
Confidence 56666666544 57899999999999998874333
No 479
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=27.71 E-value=1.2e+02 Score=27.40 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.+.++++.++ |- --.+++++|+++|++|+++.-
T Consensus 6 ~k~vlVTGas-~g--IG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 6 KGTVIITGAS-SG--VGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CCEEEEEcCC-Ch--HHHHHHHHHHHCCCEEEEEEC
Confidence 3456666554 32 346789999999999988764
No 480
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=27.64 E-value=1.1e+02 Score=28.18 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=50.7
Q ss_pred CHHHHHHHHH-HHHh-CCCCeEEEECCCCCCCCCCCCCCchhHHH-HhcCCcEEEeecCccc---cccCccccceeeccc
Q 016062 275 GEKELAEMAW-GLAN-SKQPFLWVLRPGSADGLDPTDLLPDSFKE-TVEKRGCIVNWAPQRQ---VLAHSAVGGFWTHCG 348 (396)
Q Consensus 275 ~~~~~~~~~~-al~~-~~~~~i~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~~~~~vp~~~---lL~~~~~~~~ItHGG 348 (396)
..+.+.+++- .+.+ .+.++++.-.+....+ +.+-.++ .+.+++.+.+-+|++. +|.+-++ |++-.=
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk~i~------lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSl 280 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPKRID------LEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSL 280 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcccch------HHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHH
Confidence 3444444333 3343 3567666544432122 3333333 4678999999998754 7777777 775432
Q ss_pred ----hhhHHHHHHcCCceeeecc
Q 016062 349 ----WNSILESISEGVPMICRSA 367 (396)
Q Consensus 349 ----~~s~~eal~~GvP~v~~P~ 367 (396)
.-++.||...|.|+|..=.
T Consensus 281 TEafc~~ivEAaScGL~VVsTrV 303 (426)
T KOG1111|consen 281 TEAFCMVIVEAASCGLPVVSTRV 303 (426)
T ss_pred HHHHHHHHHHHHhCCCEEEEeec
Confidence 2367899999999997544
No 481
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=27.45 E-value=79 Score=30.54 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCC
Q 016062 23 TPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLS 63 (396)
Q Consensus 23 ~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~ 63 (396)
.-+..+|+.|.+.|.++. .+. .......+ .|+....+.
T Consensus 11 ~~iv~lAk~L~~lGfeIi-ATg-GTak~L~e-~GI~v~~Vs 48 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL-STG-GTAKLLAE-AGVPVTEVS 48 (511)
T ss_pred ccHHHHHHHHHHCCCEEE-Eec-hHHHHHHH-CCCeEEEee
Confidence 347899999999999973 333 44443333 577776665
No 482
>PLN02884 6-phosphofructokinase
Probab=27.25 E-value=94 Score=29.35 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=34.9
Q ss_pred cccCccccceeeccchhhHHHHHH-------cC--CceeeecccCccccccc
Q 016062 334 VLAHSAVGGFWTHCGWNSILESIS-------EG--VPMICRSAFGDQKVNAS 376 (396)
Q Consensus 334 lL~~~~~~~~ItHGG~~s~~eal~-------~G--vP~v~~P~~~DQ~~na~ 376 (396)
.|+.-++.++|.=||-||+.-|.. .| +|+|++|-+.|-....-
T Consensus 138 ~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~t 189 (411)
T PLN02884 138 SIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLM 189 (411)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCc
Confidence 567778889999999999976643 56 99999999998776654
No 483
>PRK10749 lysophospholipase L2; Provisional
Probab=27.20 E-value=1.1e+02 Score=27.66 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
.++++.++..+|...+..++..|.++|++|..+-.
T Consensus 55 ~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~ 89 (330)
T PRK10749 55 RVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDH 89 (330)
T ss_pred cEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcC
Confidence 45666667778999999999999999999865544
No 484
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.15 E-value=69 Score=30.06 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=27.1
Q ss_pred cEEEEEcCC-CC--CCHHHHHHHHHHHHhCCCeEEEEeCC
Q 016062 9 RQVVLVPIP-LQ--GHITPMLQLGTILHSRGFSITVAHAQ 45 (396)
Q Consensus 9 ~~il~~~~~-~~--GH~~p~l~la~~L~~rGH~Vt~~~~~ 45 (396)
..+.+=|.+ +. ||+.|+..|. .|++.||+|+++...
T Consensus 35 ~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 35 VYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred EEEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 455666655 22 8999988774 688899999998874
No 485
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=27.13 E-value=72 Score=25.65 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
.++|+++-++++||. -|.-|+..|.+|++...+..
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 468999999999985 47789999999999877544
No 486
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.09 E-value=69 Score=25.84 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCCCCCCCCHHHHHHHHHHHchHHHHHHHH
Q 016062 17 PLQGHITPMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLPLSDGSSSTPKASDDFIDFMSNINLNCRAPLQEALT 96 (396)
Q Consensus 17 ~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (396)
++.|++ -..++++|.++||+|+.++-....... ..+++.+...- .+. ..+.+
T Consensus 5 GatG~v--G~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~---------~d~---------------~~~~~ 56 (183)
T PF13460_consen 5 GATGFV--GRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDL---------FDP---------------DSVKA 56 (183)
T ss_dssp TTTSHH--HHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCT---------TCH---------------HHHHH
T ss_pred CCCChH--HHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeee---------hhh---------------hhhhh
Confidence 444544 356999999999999999975442111 25666655441 111 11222
Q ss_pred HHHhcCCCcCEEEeCCc--------hhHHHHHHHHhCCCeEEEeCc
Q 016062 97 RMIAKQEDLPCVIHDGI--------MHCAEAVARHLKLPSIILYTL 134 (396)
Q Consensus 97 ~l~~~~~~~D~vI~D~~--------~~~~~~~A~~lgiP~v~~~~~ 134 (396)
.+. +.|.||.=.. .-....++++.|++.+++.++
T Consensus 57 al~----~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 57 ALK----GADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp HHT----TSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred hhh----hcchhhhhhhhhcccccccccccccccccccccceeeec
Confidence 222 4677776543 122345667889998887665
No 487
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=27.08 E-value=1.5e+02 Score=25.86 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
+.-+++.-.|+.|...-..+++.+.+++|..|.+++.....
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH
Confidence 45688888999999999999999999999999999997655
No 488
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=27.05 E-value=43 Score=33.01 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=26.4
Q ss_pred ccccccCccccceee---ccch-hhHHHHHHcCCceeeecc
Q 016062 331 QRQVLAHSAVGGFWT---HCGW-NSILESISEGVPMICRSA 367 (396)
Q Consensus 331 ~~~lL~~~~~~~~It---HGG~-~s~~eal~~GvP~v~~P~ 367 (396)
..+++..+++ +|. +=|+ -++.||+++|+|+|.-..
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~ 506 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNL 506 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccC
Confidence 4556677777 555 4454 489999999999999766
No 489
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.03 E-value=59 Score=29.08 Aligned_cols=55 Identities=5% Similarity=-0.033 Sum_probs=35.5
Q ss_pred ccccCccccceeeccchhhHHHHHH----cCCceeeecccCccccccccCCCCcHHHHHHHHHHHh
Q 016062 333 QVLAHSAVGGFWTHCGWNSILESIS----EGVPMICRSAFGDQKVNASRKGGSSYNLLNELVDHIM 394 (396)
Q Consensus 333 ~lL~~~~~~~~ItHGG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~~~~~~~~~l~~~~~~il 394 (396)
++...+++ +|+=||=||+..|++ +++|++.+-...=-+.. ..+..++.+++++|+
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~lGFl~-----~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGNLGFLT-----DLDPDNALQQLSDVL 117 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCCCCccc-----ccCHHHHHHHHHHHH
Confidence 34445677 999999999999985 37888887763211111 123455666666654
No 490
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=27.03 E-value=1.3e+02 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=30.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFNS 48 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~~ 48 (396)
.+++++..+. =+.|++.++++|.++|++|+++....+.
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 5777777554 4899999999999999999987764443
No 491
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=27.00 E-value=2.3e+02 Score=25.17 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=20.8
Q ss_pred ccccceeeccchhhHHHHHHc-----CCcee-eeccc
Q 016062 338 SAVGGFWTHCGWNSILESISE-----GVPMI-CRSAF 368 (396)
Q Consensus 338 ~~~~~~ItHGG~~s~~eal~~-----GvP~v-~~P~~ 368 (396)
+++ +|.-||=||+.|++.. ..|.+ ++|..
T Consensus 58 ~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 58 VDT--VIAGGGDGTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred CCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 455 9999999999996643 34444 48873
No 492
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=26.96 E-value=57 Score=27.84 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCC
Q 016062 25 MLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
-..+|+.|.++||+|+.+-....
T Consensus 12 G~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 12 GRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred HHHHHHHHHhCCCceEEEEcCHH
Confidence 36799999999999999987543
No 493
>PLN02240 UDP-glucose 4-epimerase
Probab=26.95 E-value=1.2e+02 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 9 RQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 9 ~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
++|++. ++.|.+ -..|+++|.++||+|+.+..
T Consensus 6 ~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 6 RTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 456654 444655 45678999999999998863
No 494
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.86 E-value=1.2e+02 Score=26.42 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|+++++..+.|+= --.++|++|+++|++|++...
T Consensus 7 k~~lITGas~~~G-IG~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 7 KRILVTGVASKLS-IAYGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred CEEEEeCCCCCcc-HHHHHHHHHHHCCCEEEEEec
Confidence 5777777654211 236789999999999877643
No 495
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.79 E-value=74 Score=23.82 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEe
Q 016062 24 PMLQLGTILHSRGFSITVAHAQFNSPHASNHPDFTFLP 61 (396)
Q Consensus 24 p~l~la~~L~~rGH~Vt~~~~~~~~~~~~~~~gi~~~~ 61 (396)
.+..+|++|+++|.+|+..--+.. . .. .|++|+.
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~~~--~-a~-~g~~~v~ 57 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDINEK--T-AP-EGLRFVV 57 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecccc--c-Cc-ccceEEE
Confidence 368899999999999877655333 1 12 5777754
No 496
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=26.78 E-value=1e+02 Score=29.41 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 016062 8 CRQVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHAQFN 47 (396)
Q Consensus 8 ~~~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~~~~ 47 (396)
.+||+++-.+..| ++.++.|+++|++|++.=....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCC
Confidence 6889999999888 8999999999999999875443
No 497
>PRK06398 aldose dehydrogenase; Validated
Probab=26.73 E-value=1.3e+02 Score=25.96 Aligned_cols=32 Identities=16% Similarity=0.004 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCeEEEEeC
Q 016062 10 QVVLVPIPLQGHITPMLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 10 ~il~~~~~~~GH~~p~l~la~~L~~rGH~Vt~~~~ 44 (396)
|.++++..+. . --.++|+.|.++||+|+++..
T Consensus 7 k~vlItGas~-g--IG~~ia~~l~~~G~~Vi~~~r 38 (258)
T PRK06398 7 KVAIVTGGSQ-G--IGKAVVNRLKEEGSNVINFDI 38 (258)
T ss_pred CEEEEECCCc-h--HHHHHHHHHHHCCCeEEEEeC
Confidence 3555555542 2 245789999999999988765
No 498
>PRK09213 pur operon repressor; Provisional
Probab=26.67 E-value=1.7e+02 Score=25.86 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=23.7
Q ss_pred CcCEEEeCCch--hHHHHHHHHhCCCeEEEeC
Q 016062 104 DLPCVIHDGIM--HCAEAVARHLKLPSIILYT 133 (396)
Q Consensus 104 ~~D~vI~D~~~--~~~~~~A~~lgiP~v~~~~ 133 (396)
++|+|+.=..- +.|..+|..+|+|++.+.-
T Consensus 130 ~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 130 KIDAVMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 69999864432 6788899999999999744
No 499
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=26.63 E-value=64 Score=27.61 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 016062 25 MLQLGTILHSRGFSITVAHA 44 (396)
Q Consensus 25 ~l~la~~L~~rGH~Vt~~~~ 44 (396)
-.+||++|+++|++|+++..
T Consensus 28 G~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHCCCEEEEEcC
Confidence 57899999999999998753
No 500
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=26.54 E-value=5.2e+02 Score=23.91 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=27.9
Q ss_pred HHHHhcCCCcCEEEeCCchhHHH-HHHHHhCCCeEEEeCchHHHH
Q 016062 96 TRMIAKQEDLPCVIHDGIMHCAE-AVARHLKLPSIILYTLNPTNL 139 (396)
Q Consensus 96 ~~l~~~~~~~D~vI~D~~~~~~~-~~A~~lgiP~v~~~~~~~~~~ 139 (396)
+++..- .||+-|=...++... .+++..++|.+++.+.|....
T Consensus 144 Eai~r~--~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~ 186 (465)
T KOG1387|consen 144 EAIIRF--PPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTIST 186 (465)
T ss_pred HHHHhC--CchheEecCCCcchhHHHHHHccCceEEEEecccccH
Confidence 444433 688777555555554 455688999999988876543
Done!