Query 016063
Match_columns 396
No_of_seqs 214 out of 2059
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 3.2E-52 6.9E-57 390.3 42.7 376 1-379 72-452 (455)
2 PRK10189 MATE family multidrug 100.0 1E-47 2.2E-52 363.3 44.1 373 1-375 84-467 (478)
3 PRK00187 multidrug efflux prot 100.0 3.2E-47 7E-52 359.8 43.7 367 2-370 66-444 (464)
4 PRK01766 multidrug efflux prot 100.0 5.7E-45 1.2E-49 345.6 43.5 371 2-374 68-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 3.7E-45 8E-50 345.3 41.9 364 2-369 69-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 1.1E-44 2.4E-49 339.5 43.6 363 2-374 66-434 (441)
7 TIGR01695 mviN integral membra 100.0 9.4E-34 2E-38 272.8 41.7 356 6-370 61-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 9.4E-33 2E-37 265.0 40.9 359 2-369 57-433 (488)
9 TIGR00797 matE putative efflux 100.0 1.1E-32 2.3E-37 252.4 33.9 290 1-292 48-341 (342)
10 PRK15099 O-antigen translocase 100.0 9.3E-32 2E-36 252.3 39.5 349 2-369 59-411 (416)
11 KOG1347 Uncharacterized membra 100.0 1.8E-33 3.8E-38 261.7 27.0 389 1-390 84-472 (473)
12 PF03023 MVIN: MviN-like prote 100.0 7.8E-30 1.7E-34 239.6 44.5 358 3-370 35-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 4.9E-26 1.1E-30 210.3 41.3 363 1-370 66-437 (518)
14 PRK10459 colanic acid exporter 99.9 3.3E-23 7.1E-28 198.9 40.0 328 23-369 75-404 (492)
15 COG0534 NorM Na+-driven multid 99.9 3.6E-24 7.8E-29 201.1 26.3 209 160-371 12-222 (455)
16 PRK10367 DNA-damage-inducible 99.9 1.9E-23 4.1E-28 196.2 26.4 206 162-369 6-211 (441)
17 PRK00187 multidrug efflux prot 99.9 3E-23 6.5E-28 196.6 26.4 207 160-370 5-215 (464)
18 PRK10189 MATE family multidrug 99.9 4.9E-23 1.1E-27 195.3 26.3 205 162-369 26-236 (478)
19 PRK09575 vmrA multidrug efflux 99.9 1.3E-22 2.7E-27 192.1 24.6 207 161-370 8-215 (453)
20 COG2244 RfbX Membrane protein 99.9 7.8E-21 1.7E-25 182.1 36.1 279 65-354 118-396 (480)
21 PRK01766 multidrug efflux prot 99.9 7.5E-22 1.6E-26 187.5 27.4 207 161-370 8-218 (456)
22 TIGR00797 matE putative efflux 99.8 3.3E-18 7.1E-23 156.7 24.0 194 173-369 1-196 (342)
23 PF01554 MatE: MatE; InterPro 99.8 4.1E-20 8.9E-25 150.3 8.2 162 173-336 1-162 (162)
24 PF01943 Polysacc_synt: Polysa 99.5 1.1E-11 2.3E-16 109.7 26.5 217 3-233 54-272 (273)
25 KOG1347 Uncharacterized membra 99.5 3.4E-12 7.3E-17 119.7 19.3 206 161-370 24-230 (473)
26 TIGR02900 spore_V_B stage V sp 99.5 8.8E-12 1.9E-16 119.9 21.7 195 168-369 2-203 (488)
27 TIGR01695 mviN integral membra 99.4 8E-11 1.7E-15 113.7 22.9 197 167-370 2-207 (502)
28 PF13440 Polysacc_synt_3: Poly 99.4 1.5E-09 3.2E-14 94.8 27.3 210 4-233 40-251 (251)
29 PF03023 MVIN: MviN-like prote 99.3 1.5E-09 3.3E-14 102.6 22.8 143 3-147 256-403 (451)
30 PF01554 MatE: MatE; InterPro 99.2 1.8E-12 3.9E-17 105.2 1.7 112 2-113 49-162 (162)
31 PRK15099 O-antigen translocase 99.2 5.6E-10 1.2E-14 105.0 18.4 191 168-369 4-196 (416)
32 COG0728 MviN Uncharacterized m 99.2 2.3E-08 5E-13 93.7 26.0 144 2-147 289-437 (518)
33 PF04506 Rft-1: Rft protein; 98.9 1.3E-06 2.9E-11 83.5 25.3 203 164-369 252-469 (549)
34 PRK10459 colanic acid exporter 98.8 1.2E-05 2.6E-10 77.5 27.2 135 7-147 270-405 (492)
35 KOG2864 Nuclear division RFT1 98.7 0.00015 3.2E-09 65.7 28.2 300 67-369 126-448 (530)
36 COG2244 RfbX Membrane protein 98.6 5E-06 1.1E-10 80.0 20.0 126 2-132 270-396 (480)
37 PF14667 Polysacc_synt_C: Poly 98.5 5.4E-06 1.2E-10 65.7 14.7 79 67-147 2-80 (146)
38 PF01943 Polysacc_synt: Polysa 98.3 0.00039 8.5E-09 61.1 21.4 186 169-369 3-190 (273)
39 PF14667 Polysacc_synt_C: Poly 98.2 1.3E-05 2.7E-10 63.5 8.8 79 289-370 2-80 (146)
40 PF07260 ANKH: Progressive ank 98.0 0.0051 1.1E-07 53.6 22.2 147 51-198 116-269 (345)
41 PF13440 Polysacc_synt_3: Poly 98.0 0.0032 6.9E-08 54.6 21.0 162 189-368 9-171 (251)
42 PF07260 ANKH: Progressive ank 97.8 0.008 1.7E-07 52.4 20.1 155 160-324 6-167 (345)
43 COG4267 Predicted membrane pro 97.6 0.049 1.1E-06 48.7 24.7 271 72-356 139-432 (467)
44 PF04506 Rft-1: Rft protein; 97.2 0.024 5.3E-07 54.8 16.3 127 20-147 340-470 (549)
45 KOG2864 Nuclear division RFT1 97.1 0.084 1.8E-06 48.5 17.5 138 8-147 305-449 (530)
46 COG4267 Predicted membrane pro 84.3 33 0.00073 31.4 19.7 136 217-369 75-210 (467)
47 PRK01637 hypothetical protein; 81.1 39 0.00085 29.9 16.4 17 377-393 270-286 (286)
48 KOG2468 Dolichol kinase [Lipid 68.7 51 0.0011 30.9 9.3 77 171-256 379-455 (510)
49 PF05975 EcsB: Bacterial ABC t 61.7 1.4E+02 0.003 27.9 15.4 37 237-273 88-124 (386)
50 PF01102 Glycophorin_A: Glycop 55.5 18 0.00039 27.3 3.5 26 346-371 67-92 (122)
51 TIGR00822 EII-Sor PTS system, 52.9 1.6E+02 0.0034 25.8 15.5 33 216-248 110-142 (265)
52 PF03904 DUF334: Domain of unk 51.0 71 0.0015 26.9 6.5 60 19-78 144-212 (230)
53 PF04505 Dispanin: Interferon- 48.2 60 0.0013 22.5 5.0 38 222-259 36-73 (82)
54 PF00558 Vpu: Vpu protein; In 45.9 23 0.0005 24.4 2.5 9 387-395 53-61 (81)
55 PF05313 Pox_P21: Poxvirus P21 43.1 1.5E+02 0.0032 24.1 6.9 27 121-147 135-161 (189)
56 PF03547 Mem_trans: Membrane t 39.7 2.1E+02 0.0046 26.4 9.0 13 253-265 37-49 (385)
57 COG5393 Predicted membrane pro 34.5 1.9E+02 0.0042 21.5 6.3 32 339-370 76-107 (131)
58 PF14184 YrvL: Regulatory prot 34.1 2.2E+02 0.0047 21.9 12.8 101 26-128 5-106 (132)
59 PF01914 MarC: MarC family int 32.8 2.9E+02 0.0064 23.0 9.5 66 217-288 13-78 (203)
60 TIGR00383 corA magnesium Mg(2+ 30.7 1.7E+02 0.0038 26.2 6.7 52 318-372 258-317 (318)
61 PF11457 DUF3021: Protein of u 30.3 2.5E+02 0.0054 21.4 16.0 19 364-382 117-135 (136)
62 PF01102 Glycophorin_A: Glycop 28.8 98 0.0021 23.4 3.8 23 125-147 69-91 (122)
63 PRK09757 PTS system N-acetylga 25.9 4.6E+02 0.0099 23.1 15.2 33 216-248 111-143 (267)
64 PRK09546 zntB zinc transporter 25.3 2.2E+02 0.0048 25.7 6.3 49 320-372 266-323 (324)
65 TIGR00765 yihY_not_rbn YihY fa 24.0 4.8E+02 0.01 22.6 16.1 9 9-17 107-115 (259)
66 KOG2533 Permease of the major 22.7 7.2E+02 0.016 24.2 20.5 64 79-142 155-222 (495)
67 COG1173 DppC ABC-type dipeptid 22.5 5.6E+02 0.012 22.8 9.6 64 74-137 100-163 (289)
68 PRK10739 putative antibiotic t 22.4 4.6E+02 0.0099 21.8 9.9 65 218-288 14-78 (197)
69 PF05393 Hum_adeno_E3A: Human 21.3 79 0.0017 22.0 1.9 24 341-364 28-51 (94)
70 PTZ00370 STEVOR; Provisional 20.6 2E+02 0.0043 25.4 4.6 32 347-378 258-292 (296)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=3.2e-52 Score=390.33 Aligned_cols=376 Identities=26% Similarity=0.382 Sum_probs=354.2
Q ss_pred CcchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHH
Q 016063 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYAL 79 (396)
Q Consensus 1 l~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~ 79 (396)
++.|+++++||++|+||++++++..++++.++++++++.+++ +.+.+|++.+++.++|+.+.+.+|+++..++.|+..+
T Consensus 72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~ 151 (455)
T COG0534 72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL 151 (455)
T ss_pred HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999777765 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH-hC-CccchHHHHHHHHHHHHHHHHHHHHHHhcc--CCcCCC
Q 016063 80 NFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-LG-WGLIGAAITLNLSWWLIVILQLLYIFITKS--DGAWSG 155 (396)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~ 155 (396)
+.++++.+|+.||+|.+++.+++++++|+++|++|+++ ++ +|+.|+++||+++++++++..++++++++. .....+
T Consensus 152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (455)
T COG0534 152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK 231 (455)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 99999999999999999999999999999999999998 57 999999999999999999999999998753 223233
Q ss_pred CCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016063 156 FSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELG 235 (396)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g 235 (396)
..+++++.+|++++.|+|..++++.....+...+.+.+++| ++++|+|+++.++.++..+++.+++++.+|+++|++|
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G 309 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG 309 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 43566789999999999999999999999999999999999 5599999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcc
Q 016063 236 AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQ 315 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 315 (396)
+||++++++..+.++.+++.++...+++++++++++.++|++|+|+.+.+..++++..+..++++.+.+..+.+||.||+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~ 389 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA 389 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Q 016063 316 SLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEADEA 379 (396)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (396)
+.+++.++++.|.+.+|+.++++..+ +|..|+|++...++.+..+...+++++++|+++..+.
T Consensus 390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 99999999999999999999997665 9999999999999999999999999998888775443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1e-47 Score=363.34 Aligned_cols=373 Identities=17% Similarity=0.197 Sum_probs=342.0
Q ss_pred CcchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHH
Q 016063 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFG--ETAEISNAAGKFALWMLPQLFAY 77 (396)
Q Consensus 1 l~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~yl~i~~~~~~~~ 77 (396)
+++|.+++++|++|++|+|++++..++++.++++++++.+++ +.+.++++.++. .|+|+.+.+.+|+++..++.|+.
T Consensus 84 l~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~ 163 (478)
T PRK10189 84 IDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAA 163 (478)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999988776 778889999884 69999999999999999999999
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHh----CCccchHHHHHHHHHHHHHHHHHHHHHHhcc---C
Q 016063 78 ALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL----GWGLIGAAITLNLSWWLIVILQLLYIFITKS---D 150 (396)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~---~ 150 (396)
.+....++++|+.||++.++..+++..++|+.++++++++. ++|+.|+++|+.+++++.++...+++++++. +
T Consensus 164 ~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~ 243 (478)
T PRK10189 164 AITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALR 243 (478)
T ss_pred HHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccce
Confidence 99999999999999999999999999999999999999853 7999999999999999999887776654311 1
Q ss_pred CcCCC-CCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016063 151 GAWSG-FSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVR 229 (396)
Q Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~ 229 (396)
.++++ +++.+++.+|++++.|.|..++.........+...+++++| ++++|+|+++.++.++..++..|++++.+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~l 321 (478)
T PRK10189 244 ISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTII 321 (478)
T ss_pred eeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 12235678999999999999999999988888888889999 5599999999999999999999999999999
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHh
Q 016063 230 VSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVA 309 (396)
Q Consensus 230 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 309 (396)
++|++|++|.+++++..+.+..+++.++..++++++++++++.++|++|+|+.+.+..++++.++..++++.+.+..+.+
T Consensus 322 vg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~l 401 (478)
T PRK10189 322 TGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGL 401 (478)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Q 016063 310 VGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKE 375 (396)
Q Consensus 310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 375 (396)
+|.||++.+++.++.+.|++.+|+.+++....++|+.|+|++..+++.+..++..+++++++|+++
T Consensus 402 rg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 402 KGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999999999999999999999999999987778999999999999999999999999999999883
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.2e-47 Score=359.82 Aligned_cols=367 Identities=23% Similarity=0.265 Sum_probs=333.1
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNF 81 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~ 81 (396)
++|.++++||++|++|+|++++..++++.+.++++++..++..+.+|++..++.|+|+.+.+.+|+++..++.|+..+..
T Consensus 66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~ 145 (464)
T PRK00187 66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFM 145 (464)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999888776557799999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHh----CCccchHHHHHHHHHHHHHHHHHHHHHHhccC--CcCC-
Q 016063 82 PIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL----GWGLIGAAITLNLSWWLIVILQLLYIFITKSD--GAWS- 154 (396)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~--~~~~- 154 (396)
..++++|+.|+++.+++.++++.++|+.+|++++++. ++|+.|+++||.+++....+...+++++++.+ .+.+
T Consensus 146 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (464)
T PRK00187 146 ALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK 225 (464)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc
Confidence 9999999999999999999999999999999999853 48999999999999998888777777654211 1111
Q ss_pred CCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016063 155 GFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNEL 234 (396)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~ 234 (396)
+..+++++.+|++++.++|.+++++.+...+.++..+++++| ++++|++++++++..+...+..+++++..+.++|++
T Consensus 226 ~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~ 303 (464)
T PRK00187 226 GLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHY 303 (464)
T ss_pred cccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122345677999999999999999999999999999999999 459999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC--cH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhHh
Q 016063 235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN--SE---AVAAETTKLSILLAITVLMNCLQPVLSGVA 309 (396)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 309 (396)
|++|++++++..+.+...++.++++.+++.+++++++.++|++ |+ |+.+.+..++++..++.++++++....+++
T Consensus 304 Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~l 383 (464)
T PRK00187 304 GAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAI 383 (464)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999964 44 688899999999999999999999999999
Q ss_pred hhcCcchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 310 VGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
++.||++.+++.++++.|++++|+.+++.+.+++|+.|+|+++.+++.+..+....+++.+
T Consensus 384 rg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 384 RGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999899999999999887889999999999999999988766666443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=5.7e-45 Score=345.63 Aligned_cols=371 Identities=21% Similarity=0.355 Sum_probs=339.3
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
+.|..+.+||++|++|+|+.++..++++.+.++.+++.+++ +.+.++++.+++.|++..+.+.+|+++.+++.|+..+.
T Consensus 68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999888766 67778999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH----hCCccchHHHHHHHHHHHHHHHHHHHHHHhccCC---cC
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK----LGWGLIGAAITLNLSWWLIVILQLLYIFITKSDG---AW 153 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~---~~ 153 (396)
.++++++|+.|+++.+++.++++.++|+.++++++++ .++|+.|++++|.+++++..++..+++++++... ..
T Consensus 148 ~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~ 227 (456)
T PRK01766 148 QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLF 227 (456)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhh
Confidence 9999999999999999999999999999999999864 2589999999999999999999888876652211 11
Q ss_pred CCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 154 SGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNE 233 (396)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~ 233 (396)
.++.+++++.+|++++.++|..++.+.+...+.++..+++++| ++++++++++.++.++...+..+++.+..+.++|+
T Consensus 228 ~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 228 KGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222345678999999999999999999999999999999999 45899999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcC
Q 016063 234 LGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAG 313 (396)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 313 (396)
+|++|++++++..+.++.+++.++++.+++++.+++++.++|++|+++.+.+..++++..+..++++++....++++|.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcChHH
Q 016063 314 WQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRK 374 (396)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 374 (396)
|++.+++.++++.+++.+|..+++.+.+++|+.|+|+++.+++.+..++...++++.+|+.
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998889999999998778899999999999999999999888887766554
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=3.7e-45 Score=345.31 Aligned_cols=364 Identities=17% Similarity=0.197 Sum_probs=330.7
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
+.|.+++++|++|++|+|++++..++++.+.++.+++..++ +.+.+|++.+++.|++..+.+.+|+++..++.|+..+.
T Consensus 69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~ 148 (453)
T PRK09575 69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA 148 (453)
T ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999888776 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHhccCCcCC-CCCHH
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWS-GFSWL 159 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 159 (396)
......+|+.|+++.++..++.+.++|+.+++++++.+++|+.|+++|+++++++..++..+++++++.+.+++ +..+.
T Consensus 149 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (453)
T PRK09575 149 IALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRF 228 (453)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCc
Confidence 99999999999999999999999999999999999888999999999999999999999888776553322221 11234
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 016063 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (396)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~ 239 (396)
+++.+|++++.|.|..++.....+...+...+.+++|+ +.++|+++++.++..+..++..+++++..|.+||++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 56778999999999999999999988888888888885 34799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC-cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhH
Q 016063 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN-SEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLV 318 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 318 (396)
+++++..+.++.+++..+++.+++++++++++.++|++ |||+.+.+.+++++..++.++++++....+.+||.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999999999999999999995 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 319 AYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
+..+... +++++|..++++. .+|+.|+|+++.+++.+..+....++++
T Consensus 388 ~~~~~~~-~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 388 LFISIGN-MLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHh-HHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999876 4778999998853 3799999999999999988876665554
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=339.53 Aligned_cols=363 Identities=15% Similarity=0.145 Sum_probs=314.0
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
+.|.++++||++|++|+|++++..++++.+.++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999888766 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHhccCCc--CCCCCH
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGA--WSGFSW 158 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (396)
.+.++.+|+.||++.++..+++++++|+++|++++++.++|+.|+++||.+++++.++...+++++++...+ .+.++.
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 225 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT 225 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence 999999999999999999999999999999999999889999999999999999999888777766421111 111111
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 016063 159 LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGN 238 (396)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~ 238 (396)
..++..|++++.|.|..+++......+.+...+++++| ++++|+|+++.++.++..++..|++++.+|.++|++|++|
T Consensus 226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~ 303 (441)
T PRK10367 226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARD 303 (441)
T ss_pred hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 11246899999999999999999999999999999999 4589999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcC---cc
Q 016063 239 ARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAG---WQ 315 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~ 315 (396)
++++|+..+++.+++..++.+.+++++.+++++.++|++|+|+.+.+..++++..+..+.........+++++.+ |+
T Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt 383 (441)
T PRK10367 304 GSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEM 383 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHH
Confidence 999999999999999999999999999999999999999999999999999998876443324444444444444 59
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcChHH
Q 016063 316 SLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRK 374 (396)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 374 (396)
+.++..+.++.|+..+ . .+++|..|+|++..+++.+..++...++++ +|+|
T Consensus 384 ~~~~~~~~~~~~~~~~-----~--~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 384 RNSMAVAAAGFALTLL-----T--LPWLGNHGLWLALTVFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred HHHHHHHHHHHHHHHH-----H--HHHcCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 9999999988653222 1 235799999999999999999987766554 4754
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=9.4e-34 Score=272.83 Aligned_cols=356 Identities=15% Similarity=0.122 Sum_probs=298.2
Q ss_pred hhHHHhhhCCCCc-chHHHHHHHHHHHHHHHHH-HHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 6 ETLCGQAFGAGSI-RMLGVYMQRSWVILLITSC-VLSPL-YVWSPPVLMLF--GETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 6 ~~~is~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
+..+++..+++|+ |+.++...+++....+.+. +..++ +.+.+++..++ +.+++..+.+.+|+++..++.|+..+.
T Consensus 61 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~ 140 (502)
T TIGR01695 61 SAFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA 140 (502)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555444 4677677776665554444 34444 67778888877 557788899999999999999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHH--HHHHHHHHHHHHHHHHHHHHhccCCcCCCCCH
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAA--ITLNLSWWLIVILQLLYIFITKSDGAWSGFSW 158 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (396)
.+.++++|+.+|++.++..+++.++++++...++ ..++|..|++ +++++++.+..++...+.+|++.+.+ .+++
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~- 216 (502)
T TIGR01695 141 AVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLK-PRFN- 216 (502)
T ss_pred HHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CcCC-
Confidence 9999999999999999999999998887753333 3578999988 99999999999888777765432211 1111
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCC
Q 016063 159 LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAM-IAIGFNAAISVRVSNELGAG 237 (396)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~i~~~~~~~~s~~~g~~ 237 (396)
.+++..|++++++.|..+++....+...+|..+.+.++. .++++|+.+.++.++... +..+++++..|.+|+++|++
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~ 294 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEG 294 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 235678999999999999999999999999988877774 489999999999988764 67899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC----cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcC
Q 016063 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTN----SEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAG 313 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 313 (396)
|+++.++..+++.+....++.+.+++++++++++.+++.+ |+|..+.+.+++++++++.++.+++....+.+++.|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g 374 (502)
T TIGR01695 295 NWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARK 374 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcc
Confidence 9999999999999999999999999999999999999875 567788999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 314 WQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
|++.+++.+..+. ++++++++.+. +.+|..|+|+++.+++.+..+...++.+|+
T Consensus 375 ~~~~~~~~~~~~~-~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 375 DTRTPFINSVISV-VLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred CCccCHHHHHHHH-HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999975 78899988884 458999999999999999998877777664
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=9.4e-33 Score=265.02 Aligned_cols=359 Identities=16% Similarity=0.145 Sum_probs=298.6
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
+++..+.+||+.|++|+++.++.+++++.+.++.+++..++ +.+.+++...++++++. ..++++..++.++..+.
T Consensus 57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~ 132 (488)
T TIGR02900 57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALS 132 (488)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999888765 66677776666666554 24678888999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH-----hCCccchHHHHHHHHHHHHHHHHHHHHHHhcc-CCc--
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-----LGWGLIGAAITLNLSWWLIVILQLLYIFITKS-DGA-- 152 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~-- 152 (396)
...++++|+.+|++..+..+++++++|+.++..++.. .+.|+.|+++++.+++.++.+...++.++++. +.+
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T TIGR02900 133 SVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFP 212 (488)
T ss_pred HHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999998887666542 24678889999999999999987776655422 111
Q ss_pred CCCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hH---HHHHHH-HHHHHHHHHHHHHHHHHH
Q 016063 153 WSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPN-----AL---IAVDAI-SVCMNIQGWDAMIAIGFN 223 (396)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~a~~-~~~~~i~~~~~~~~~~i~ 223 (396)
+.+.++.+++.+|+++++|.|..++++...+...+|..++++... .. ...+.| +++.++..+...+..+++
T Consensus 213 ~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~ 292 (488)
T TIGR02900 213 FFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLS 292 (488)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHH
Confidence 111223446689999999999999999999999999988875421 01 122333 355677777778889999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016063 224 AAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQP 303 (396)
Q Consensus 224 ~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 303 (396)
++..|.++++.|++|+++.++..++++++...++.|.++.+.++++++..++.++++ +.++++++++..++..++.
T Consensus 293 ~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~ 368 (488)
T TIGR02900 293 TALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSA 368 (488)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999875543 5788999999999999999
Q ss_pred hhhhHhhhcCcchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 304 VLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 304 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
...+.+++.||+|.+++.+.++. ++++++++.+...+.+|+.|+|+++.+++.+..+...++.+|
T Consensus 369 ~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 369 PLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999985 788998888754478999999999999999999988777766
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.1e-32 Score=252.45 Aligned_cols=290 Identities=30% Similarity=0.469 Sum_probs=262.0
Q ss_pred CcchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHH
Q 016063 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYAL 79 (396)
Q Consensus 1 l~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~ 79 (396)
+++|..+.++++.|++|+|+.++..++++.+..+++++.+++ +.+.+|+..+++.|++..+++.+|++++.++.++..+
T Consensus 48 i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~ 127 (342)
T TIGR00797 48 LGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLL 127 (342)
T ss_pred HHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999988776 7888999988888888999999999999999999999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HhC-CccchHHHHHHHHHHHHHHHHHHHHHHh-ccCCcCCCC
Q 016063 80 NFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLIL-KLG-WGLIGAAITLNLSWWLIVILQLLYIFIT-KSDGAWSGF 156 (396)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~ 156 (396)
..+..+.+|+.||++.+...++++.++++.++++++. .++ +|+.|+++++.+++++..++..++.+++ +.+.++++.
T Consensus 128 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (342)
T TIGR00797 128 NFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGL 207 (342)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 9999999999999999999999999999999999887 567 8899999999999999999888777653 222221222
Q ss_pred CHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016063 157 SWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGA 236 (396)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~ 236 (396)
.+.+++..|+++++|.|.+++++...+...++..+.+++| ++++++|+++.++.++...+..+++++..|.+++++++
T Consensus 208 ~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 285 (342)
T TIGR00797 208 LKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGA 285 (342)
T ss_pred cCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2345668999999999999999999999999999999988 45899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHH
Q 016063 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILL 292 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~ 292 (396)
+|+++.++..+++++..+.++++.+.++.++++++.++|++||++.+.+..++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 286 GDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998888764
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=9.3e-32 Score=252.28 Aligned_cols=349 Identities=11% Similarity=-0.005 Sum_probs=289.1
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
++|.++.++|+ ++|+|+.++.+++++.+.+..+++.+++ +.+.+|+...++.+++. ..+..+..+..++..+.
T Consensus 59 ~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 59 FNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWA 132 (416)
T ss_pred cceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHH
Confidence 34557778877 6788889999999999999999988776 78889998877777653 24566666667777888
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHhcc-CCcCCCCCHH
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKS-DGAWSGFSWL 159 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 159 (396)
....+.+|+.+|++.++..++++.++|+.+ ++++... .|+.|+++|+++++.+..+...++++|++. +.+..++ +.
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 209 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SW 209 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cC
Confidence 999999999999999999999999999887 4444332 499999999999999998887777765532 1111112 23
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCC
Q 016063 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITG-RLPNALIAVDAISVCMNIQGW-DAMIAIGFNAAISVRVSNELGAG 237 (396)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~ 237 (396)
+++.+|+++++|.|..+++....+....++.+++ .+| ++++|.|+.+.++.+. ...+..+++++..|.++++ +
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 4667899999999999999999999999998886 777 5599999999999774 4789999999999999995 6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchh
Q 016063 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSL 317 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 317 (396)
|+++.++..++.......+..+.++.++++++++.+++.+|+ ++++.+++++++++..+...+......+.+.++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999876 667889999999999999888888777778888877
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 318 VAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
.....+.. .++++++++++ .+.+|..|+++++.+++.+..........+
T Consensus 363 ~~~~~~~~-~~l~i~l~~~l--i~~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 363 YILAEVSQ-FTLLTGFAHWL--IPLHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHH-HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67666664 57889999988 566899999999999999999876655543
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.8e-33 Score=261.67 Aligned_cols=389 Identities=45% Similarity=0.775 Sum_probs=366.9
Q ss_pred CcchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 1 l~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
+.++..++.+|++|.++.+......+++..+....+++..+++.+.+|++..+++|+++...+..|.+++.+..+.+...
T Consensus 84 l~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~ 163 (473)
T KOG1347|consen 84 LQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVS 163 (473)
T ss_pred cchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCHHh
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLA 160 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (396)
...+.++|++++..+..+......++|+.+++++++..++|..|++++..+++++....+..|.........+..+..+
T Consensus 164 ~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~- 242 (473)
T KOG1347|consen 164 FPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE- 242 (473)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999998776545556666656
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 016063 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240 (396)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~ 240 (396)
++.++++++++.|..++.-.++..+....+..|.++....++++.++..++....++++.+++.+...++++.+|++|++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 88999999999999999999999999999999999987788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHH
Q 016063 241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAY 320 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 320 (396)
.+|.....+....+..+...+...+...+.+..+|++|+++.+...+..+++++...+++.+.+..+..++.|+++...+
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhhcCCCC
Q 016063 321 INLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEADEAASRVMKWGGST 390 (396)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (396)
+++.+.++.++|+...+.+..++|..|+|.++..+..+..........+.+|++...+..++...+++++
T Consensus 403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred EeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999988889999999999999988888888888888999999999998877665543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=7.8e-30 Score=239.57 Aligned_cols=358 Identities=17% Similarity=0.177 Sum_probs=312.1
Q ss_pred chhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHH
Q 016063 3 SALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLF--GETAEISNAAGKFALWMLPQLFAYAL 79 (396)
Q Consensus 3 ~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~yl~i~~~~~~~~~~ 79 (396)
++..+..++.. ++++|+.++..++.+.+..+.++.++++ +++++++++.+ +.+++..+.+.++++++.+..++..+
T Consensus 35 ~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l 113 (451)
T PF03023_consen 35 AAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGL 113 (451)
T ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777 7788889999999988888888888776 88889998887 56789999999999999999999999
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCc---cchHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCC
Q 016063 80 NFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWG---LIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGF 156 (396)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (396)
..++.+++|+++|+..+....++.++..++...++. ...| +.+.+++.+++.++..++.+...+|.+.+.+.. +
T Consensus 114 ~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~-~ 190 (451)
T PF03023_consen 114 SSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPK-F 190 (451)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccc-C
Confidence 999999999999999999999998888666443333 3356 889999999999999999888887764332221 1
Q ss_pred CHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Q 016063 157 SWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELG 235 (396)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~~~~~~~s~~~g 235 (396)
+ ...+..|++++...|..+.+...++...++..+.+.++.+ ++++++.++++.+++. .+..+++++..|..|+...
T Consensus 191 ~-~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~ 267 (451)
T PF03023_consen 191 D-WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAA 267 (451)
T ss_pred C-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1224589999999999999999999999999999999966 8999999999999887 5688999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc----CcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhh
Q 016063 236 AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFT----NSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVG 311 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 311 (396)
++|.++.++..+++++....+.+|.++.++.++++++++.. .|+|..+....++++++++.++.+++......+++
T Consensus 268 ~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya 347 (451)
T PF03023_consen 268 EGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYA 347 (451)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999874 35677889999999999999999999999999999
Q ss_pred cCcchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 312 AGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
.||+|.+++.+.++. ++++.+.+.+ .+.+|..|+++++.++..+..++....++|+
T Consensus 348 ~~~~~~~~~~~~~~~-~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 348 LGDTKTPVRISVISV-VLNIILSILL--VPFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred ccCcHhHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999974 7888888777 5678999999999999999999988877775
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=4.9e-26 Score=210.33 Aligned_cols=363 Identities=13% Similarity=0.071 Sum_probs=305.5
Q ss_pred CcchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--CHHHHHHHHHHHHHHHhHHHH
Q 016063 1 MGSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLF-GE--TAEISNAAGKFALWMLPQLFA 76 (396)
Q Consensus 1 l~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~yl~i~~~~~~~ 76 (396)
++++..+...++..++++|+.++..+....+...+.+.++++ .++.+.+.... +. +++....+....+++.+.+++
T Consensus 66 fs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~ 145 (518)
T COG0728 66 FSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLF 145 (518)
T ss_pred HhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 356778888888888877888788777776777777777766 66666666444 22 344444688888999999999
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCC
Q 016063 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGF 156 (396)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (396)
..+.....+.++..+++..+.+..+..|+.-+.....+......-..+.++++.++.+.+.++.+..++|.+...+.+ +
T Consensus 146 isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~ 224 (518)
T COG0728 146 ISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-F 224 (518)
T ss_pred HHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-C
Confidence 999999999999999999999999999988875544444332224678899999999999999999998874322222 1
Q ss_pred CHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Q 016063 157 SWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELG 235 (396)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~~~~~~~s~~~g 235 (396)
. .+.+..|++.+.-.|..++....++...+|+.+.+.+.++ +++.++.+.++++++. .+..++++...|..|++..
T Consensus 225 ~-~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~ 301 (518)
T COG0728 225 G-FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAA 301 (518)
T ss_pred C-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 1 1124799999999999999999999999999999999866 8899999999999987 7899999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc----CcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhh
Q 016063 236 AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFT----NSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVG 311 (396)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 311 (396)
++|.++.++..+.+++.++...+|.+..+..+++|+.++.. .+++....+.+.+..++++.++..+..+....+++
T Consensus 302 ~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYA 381 (518)
T COG0728 302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYA 381 (518)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999873 34666888999999999999999999999999999
Q ss_pred cCcchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 312 AGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
.+|+|.|+.+++++ .++++.+++.+ .+.+|..|+++++.++.+++..+.++..+|+
T Consensus 382 r~d~ktP~~i~ii~-~~~n~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 382 REDTKTPMKIAIIS-LVVNILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred ccCCCcChHHHHHH-HHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998 48899998666 5668999999999999988888877777764
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.94 E-value=3.3e-23 Score=198.90 Aligned_cols=328 Identities=11% Similarity=0.070 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 016063 23 VYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISA 101 (396)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (396)
+..++.+.+..+.+++..++ +.+.+++..+++ +++. ...+++..+..++..+....++.+|..++++.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 45566777777777776665 444555544444 4443 24577778888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCHHhHHhHHHHHHHHHHHHHHHHHH
Q 016063 102 IVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLE 181 (396)
Q Consensus 102 ~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 181 (396)
..++...+..+.+.. .+.|+.+.++++.+++.+..+...... +++.+++ + +.+++..|++++++.|...+++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~---~-~~~~~~~k~ll~~~~~~~~~~~~~ 223 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKIYRPA---L-HFSLASVKPNLSFGAWQTAERIIN 223 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-cccCCcc---c-eecHHHHHHHHhhhHHHHHHHHHH
Confidence 988888777666554 578999999999999988876543332 2222111 1 123456899999999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 016063 182 FWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCC 260 (396)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (396)
.+....|.++++++.+ ++++|.|+.+.++.+.+. .+...+++...|..++. ++|.++.++.+++..+....+++|.
T Consensus 224 ~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 300 (492)
T PRK10459 224 YLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPL 300 (492)
T ss_pred HHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888764 568999999999988765 45666888999999986 5788999999999999999999999
Q ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHHHHHHHHHHhhhhHHHHHHHh
Q 016063 261 TILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFT 340 (396)
Q Consensus 261 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (396)
++.+.+.++++..++.+|+ ++.+.+.++++++...+..+.......+++.||+|..+..+++.. ++.+|..+.+ .
T Consensus 301 ~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~--~ 375 (492)
T PRK10459 301 LLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIG--G 375 (492)
T ss_pred HHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHH--H
Confidence 9999999999999887765 778899999999999999999999999999999999998888864 6777776666 4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 341 FGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 341 ~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
+.+|..|+++++.+++.+......+...|
T Consensus 376 ~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 376 QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55799999999999999988877766634
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.93 E-value=3.6e-24 Score=201.14 Aligned_cols=209 Identities=22% Similarity=0.226 Sum_probs=199.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 016063 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (396)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~ 239 (396)
.++..|+++++++|.+++++.+.+.+.+|++++|+++ ++++|+-++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 3457999999999999999999999999999999999 56999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHH
Q 016063 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (396)
+++++..+++...+++++++..++.+.+++++.+++++++|+.+.+.+|+++..++.|+..++....+++++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh-cC-CCchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016063 320 YINLGCYYIVGLPLGILLGFT-FG-FGAEGIWSGMIGGIGLQTLILIVITSITN 371 (396)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 371 (396)
+.+.++. +.|+.+++++.+. ++ +|+.|+++|+.+++.+..+....++.+++
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999985 8999999999877 46 99999999999999999999888888765
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.93 E-value=1.9e-23 Score=196.25 Aligned_cols=206 Identities=14% Similarity=0.095 Sum_probs=192.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 016063 162 ADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARA 241 (396)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~ 241 (396)
++.|+++++++|..++++...+.+.+|..+++++++ ++++|+.+++.++.++...+..+++.+..+.+||++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 468899999999999999999999999999999954 5589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHHH
Q 016063 242 AKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYI 321 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 321 (396)
+++..++++..+++.+++..+....+.+++.++++.|+|+.+.+.+|+++..++.|+..+.....+++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 322 NLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
++++. ++++++++++.+.+++|+.|+++|+.+++.+..++...++.+
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99985 889999999988788999999999999999988876666654
No 17
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.92 E-value=3e-23 Score=196.61 Aligned_cols=207 Identities=17% Similarity=0.098 Sum_probs=189.1
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 016063 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (396)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~ 239 (396)
++++.|++++.++|.+++++...+...+|..+++++| ++++|+++++.++.++...+..+++++..|.+||++|++|+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4567999999999999999999999999999999998 55999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHH
Q 016063 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (396)
+++++..+.+..+..+++++..++.+ +.+++.++++.|+|+.+.+.+|+++..++.|+..+.....+++++.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877765 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 320 YINLGCYYIVGLPLGILLGFT----FGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
+.++++. ++++++++.+.+. +++|+.|+++|+.+++....+...++++++
T Consensus 162 ~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 162 VISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999975 7799999987653 368999999999999888777666666543
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.92 E-value=4.9e-23 Score=195.26 Aligned_cols=205 Identities=16% Similarity=0.099 Sum_probs=190.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 016063 162 ADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARA 241 (396)
Q Consensus 162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~ 241 (396)
+.+|+++++++|.+++++...+.+.+|..+++++| ++++|+++++.++..+...+..+++++..+.+||++|++|+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35899999999999999999999999999999998 5599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc--CcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHH
Q 016063 242 AKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFT--NSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (396)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (396)
+++..+.++.+++.++++.+++.+++++++.+++. .|+|+.+.+.+|+++..++.|+..+.....+++|+.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 320 YINLGCYYIVGLPLGILLGFT----FGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
+.++++ .++++++.+.+.+. +++|+.|+|+|+.+++.+..++...++.+
T Consensus 184 ~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 184 LINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999986 58889998888753 47899999999999999988876555543
No 19
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.91 E-value=1.3e-22 Score=192.06 Aligned_cols=207 Identities=11% Similarity=0.034 Sum_probs=194.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 016063 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRL-PNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 239 (396)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~ 239 (396)
++..|+++++++|..++++...+...+|..+++++ | ++++++++++.++.++...+..+++.+..+.++|++|++|+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 44679999999999999999999999999999996 6 55899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHH
Q 016063 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (396)
|++++..++++.++.+++++.+++.+.+++++.++++.|+++.+.+.+|+++..++.++..+.....+++++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 320 YINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
..++.+. ++++++++.+.+.+++|+.|+++|+.+++.+..++...+++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999985 8999999999877789999999999999999988877666543
No 20
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.91 E-value=7.8e-21 Score=182.05 Aligned_cols=279 Identities=17% Similarity=0.113 Sum_probs=228.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Q 016063 65 KFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYI 144 (396)
Q Consensus 65 ~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~ 144 (396)
..+.+..+..++.......++.+|+.++++......+.. ..-... .+... ........++..++..........+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (480)
T COG2244 118 LLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAA--VFALL-FAALGLAVWALVLGAVVSLLVLLILL 193 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHH--HHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999994444 111111 11111 13445566777777777666666555
Q ss_pred HHhccCCcCCCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016063 145 FITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNA 224 (396)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~ 224 (396)
.+++.+.....++ +.++..|+++++|.|....++...+....|.++++++-+ ++++|.|+.+.++......+..++++
T Consensus 194 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~ 271 (480)
T COG2244 194 GKKKRGLKRPILR-FSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNR 271 (480)
T ss_pred HHhhhhccccccC-chhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHH
Confidence 4322211222222 236789999999999999999999999999999998765 66899999999999999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016063 225 AISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPV 304 (396)
Q Consensus 225 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 304 (396)
+..|.+++...++|.++.++..+++.++...+++|..+.+..+++++..++.+++ +..+...++++++..++......
T Consensus 272 ~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~ 349 (480)
T COG2244 272 VLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSL 349 (480)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988766 44588999999999999999999
Q ss_pred hhhHhhhcCcchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHH
Q 016063 305 LSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIG 354 (396)
Q Consensus 305 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~ 354 (396)
....+++.|+++..++.+.++. +.++.+++.+ .+.+|..|++.++..
T Consensus 350 ~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l--i~~~g~~g~~~a~~~ 396 (480)
T COG2244 350 TSSLLQALGKQRLLLLISLISA-LLNLILNLLL--IPRFGLIGAAIATAS 396 (480)
T ss_pred HHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH--HHhhhhhhHHHHHHH
Confidence 9999999999999999999985 7888888877 567899999988833
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.91 E-value=7.5e-22 Score=187.52 Aligned_cols=207 Identities=14% Similarity=0.082 Sum_probs=191.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 016063 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 240 (396)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~ 240 (396)
++.+|+++++++|..++++...+...+|..+++++| ++++++++++.++..+...+..+++.+..|.+||++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 567999999999999999999999999999999998 458999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHH
Q 016063 241 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAY 320 (396)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 320 (396)
++++..+.++.+.+.++++.+++.+++++++.++++.|+++.+.+.+++++..++.++..+.....+++++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHh----cCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 321 INLGCYYIVGLPLGILLGFT----FGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
.+.++. ++++++++.+.+. +++|+.|+++++.+++.+..++..++.+++
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999985 7899999887642 568999999999999999999877766553
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.82 E-value=3.3e-18 Score=156.68 Aligned_cols=194 Identities=20% Similarity=0.195 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 016063 173 ASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSIT 252 (396)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 252 (396)
|.+++++...+...++..+++++| ++++++++.+.++..+...+..+++++..|.++++.|++|+++.++..+.+..+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999999 458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHHHHHHHHHHhhhh
Q 016063 253 AVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLP 332 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 332 (396)
....+++.+++.+++++++.++++.|++..+.+.++++++.++.++.+.+....+.+++.||.+.+++.+.++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999875 77888
Q ss_pred HHHHHHH-hcC-CCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 333 LGILLGF-TFG-FGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 333 ~~~~~~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
..+.+.. ..+ +|+.|+++++.+++++..++...+.++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765 455 779999999999999988887666654
No 23
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.81 E-value=4.1e-20 Score=150.26 Aligned_cols=162 Identities=24% Similarity=0.358 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 016063 173 ASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSIT 252 (396)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 252 (396)
|..++++...+.+.++..+++++| ++++++++++.++.++...+..+++++..+.+||++|++|++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999997 558999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHHHHHHHHHHhhhh
Q 016063 253 AVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLP 332 (396)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 332 (396)
...++++.++..+++++++.++|++|+|+.+.+.+++++..++.++..+.....+++++.||++.+++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 016063 333 LGIL 336 (396)
Q Consensus 333 ~~~~ 336 (396)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.54 E-value=1.1e-11 Score=109.66 Aligned_cols=217 Identities=18% Similarity=0.202 Sum_probs=158.8
Q ss_pred chhhhHHHhhhCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 3 SALETLCGQAFGAGSI--RMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 3 ~~~~~~is~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
.|....+.|+..+++. ++.+....+......+.+++........ ...+.++.. . .+........+.....
T Consensus 54 ~G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 125 (273)
T PF01943_consen 54 LGLSQAIVRFIAEYKDKKELRSAYFSSVLFLLLIFSLIFLLILLIA----SFFGNPSLS-L---ILIILALLILILSSLS 125 (273)
T ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCchHH-H---HHHHHHHHHHHHHHHH
Confidence 4556666666666554 4455555555555544444433332221 233333222 2 1222222222578888
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCHHh
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLA 160 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (396)
....+++++.++.+.....++...+...++..+++.. +.+..+..++..++..+..+...++.+|+.. .+++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 200 (273)
T PF01943_consen 126 SVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR----PRFSFFS 200 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccccccc
Confidence 9999999999999999999999999988776666653 4458999999999999998888888776531 2222233
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNE 233 (396)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~ 233 (396)
++..|++++++.|..++++...+....|.++++++.+ ++++|.|+++.++......+..++.++..|.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6689999999999999999999999999999999876 67899999999999999999999999999999985
No 25
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.48 E-value=3.4e-12 Score=119.66 Aligned_cols=206 Identities=14% Similarity=0.212 Sum_probs=188.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCh
Q 016063 161 FADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWD-AMIAIGFNAAISVRVSNELGAGNA 239 (396)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~ 239 (396)
..+.|++.+++.|.++....+.....++..+.||+|+ .++++.++++...+.. ..+..++..+..|.++|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 5788999999999999999999999999999999995 4899999998887764 567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHH
Q 016063 240 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (396)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (396)
+......+++........++.+. ++.+.+++...+.+|+++...+..|.+.+.+..+...........+|++++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999988888884 55577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 320 YINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
++.... ..+++++.+++.+.+++|..|++++..+++.+.......+....
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 999887 58999999999999999999999999999999998877776653
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.47 E-value=8.8e-12 Score=119.91 Aligned_cols=195 Identities=16% Similarity=0.116 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHH
Q 016063 168 VKLSLASAVMLCLEFWYLMLLVVITGRL-PNALIAVDAISVCMNIQGWDAMIA-IGFNAAISVRVSNELGAGNARAAKFS 245 (396)
Q Consensus 168 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~i~~~~~~~~-~~i~~~~~~~~s~~~g~~~~~~~~~~ 245 (396)
.|-+.|..++++.......++..+.++. | +++.|.++.+..+..+...+. .|++++..+.+++..|++|+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 4668899999999999999999988885 6 568999999999988877765 48999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHHHHHHH
Q 016063 246 VLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGC 325 (396)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 325 (396)
.+.+..+.+..+++.+++.+++++++...+.+|++. ..+++++.+..++..+.......+|+.+|.+..+..+.++
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 999999999999999999999999988877666643 3567888899999999999999999999999999988887
Q ss_pred HHHhhhhHHHHHHH-----hcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 326 YYIVGLPLGILLGF-----TFGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 326 ~~~~~~~~~~~~~~-----~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
. ++++.....+.. ..++|+.|..+++.++..+..+....++++
T Consensus 156 ~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~ 203 (488)
T TIGR02900 156 Q-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKR 203 (488)
T ss_pred H-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 444433222211 234567788888888888888876555444
No 27
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.39 E-value=8e-11 Score=113.68 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCChHHH
Q 016063 167 FVKLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAV-DAISVCMNIQGWDAMIA--IGFNAAISVRVSNELGAGNARAA 242 (396)
Q Consensus 167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-a~~~~~~~i~~~~~~~~--~~i~~~~~~~~s~~~g~~~~~~~ 242 (396)
+.|-+.-..+.++...+...++..++++ +|++ +. ++++.+.++.+....+. .+++++..|...++.+++ ++.
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~--~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~ 77 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAG--LTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEA 77 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--hHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHH
Confidence 3466666778888888899999999888 7853 67 79999999987765443 368888888877664432 677
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcccccccc--cCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHH
Q 016063 243 KFSVLVVSITAVTIG-VCCTILVLATRYNFPFLF--TNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVA 319 (396)
Q Consensus 243 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 319 (396)
++....+........ +...++.+++++++.+++ +.|++..+.+.++++++.++.++..+.....+++|+.||.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPS 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHH
Confidence 777766666555444 445677888899999988 34666678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCchHHH--HHHHHHHHHHHHHHHHHHHhc
Q 016063 320 YINLGCYYIVGLPLGILLGFTFGFGAEGIW--SGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~--~a~~~~~~~~~~~~~~~~~~~ 370 (396)
..+.+.. +..+...+.. .+++|..|++ +++.++..+..+....+.+|+
T Consensus 158 ~~~i~~~-i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 158 FSPILFN-IGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred HHHHHHH-HHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9998876 3444433233 5678999988 999999998888766655543
No 28
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.37 E-value=1.5e-09 Score=94.77 Aligned_cols=210 Identities=18% Similarity=0.197 Sum_probs=148.2
Q ss_pred hhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016063 4 ALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPI 83 (396)
Q Consensus 4 ~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~ 83 (396)
|....+.+. .++|+++.++..+.......+.+++..++ ...+..++ .+++. ..++....+..+........
T Consensus 40 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~ 110 (251)
T PF13440_consen 40 GLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAIL---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLF 110 (251)
T ss_pred HHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHH
Confidence 444555552 33455556666666655444444333322 11111233 33333 23455677788889999999
Q ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCHHhHHh
Q 016063 84 QKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFAD 163 (396)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (396)
++.+++.+|.+.....+....+...++..++.. .+.+..+..++..++.++..++.....+++ .+.++ +.+.
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~ 182 (251)
T PF13440_consen 111 RSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRK---LRLSF----KFSW 182 (251)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccc---cCCCc----hhhH
Confidence 999999999999999999999988555444443 345888999999999988887766533321 11111 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 016063 164 LWAFVKLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNE 233 (396)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~~~~~~~s~~ 233 (396)
. +.++.+.|....++........|..+++. +| .+++|.|+++.++...+. .+..++++...|.++|.
T Consensus 183 ~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 183 R-RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 47999999999999999999999999999 65 669999999999999888 99999999999999873
No 29
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.27 E-value=1.5e-09 Score=102.58 Aligned_cols=143 Identities=20% Similarity=0.177 Sum_probs=129.6
Q ss_pred chhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHH
Q 016063 3 SALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFG----ETAEISNAAGKFALWMLPQLFAY 77 (396)
Q Consensus 3 ~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~yl~i~~~~~~~~ 77 (396)
+..-+..||...++|+++.++.+++++...+.+.++.++. ..+++|+++.+. -+.|-.+.....++++++++|+.
T Consensus 256 tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~ 335 (451)
T PF03023_consen 256 TVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFY 335 (451)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4455778999999999999999999999999999999876 899999998763 36677788889999999999999
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 78 ALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (396)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 147 (396)
.+...+...+.+.+|+|.++..++++.++|++++.++... +|..|.++++.++.++.++.+...++|+
T Consensus 336 ~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 336 ALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754 8999999999999999999988888776
No 30
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.25 E-value=1.8e-12 Score=105.15 Aligned_cols=112 Identities=25% Similarity=0.391 Sum_probs=106.7
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
++|.++.+||.+|++|+|+.++..+.++.+..+++++..++ +.+.+++..+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (162)
T PF01554_consen 49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF 128 (162)
T ss_dssp HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence 57899999999999999999999999999999999999887 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHH-HHHHHHHHH
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVL-VLHALFSWL 113 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l~~~ 113 (396)
...++++|+.|+++.+++.++.+. ++|+.++++
T Consensus 129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 999999999999999999999999 999998874
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.24 E-value=5.6e-10 Score=105.02 Aligned_cols=191 Identities=12% Similarity=0.012 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHH
Q 016063 168 VKLSLASAVMLCLEFWYLML-LVVITGRLPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFS 245 (396)
Q Consensus 168 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~ 245 (396)
.|-+................ ..++...+| +++.+..+....+..+...+ ..+++++....++|+ ++|+++.++.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~ 79 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAV 79 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHH
Confidence 34444444555555544333 445555566 45788888778777766655 777878878888887 6889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHHHHHHH
Q 016063 246 VLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGC 325 (396)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 325 (396)
...+....+..+++.+++.+++.+++...+.+|++ . ..++.+..+..++..+.....+.+++.||++.++..+.++
T Consensus 80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~ 155 (416)
T PRK15099 80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVG 155 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887776664 2 3556666666667777889999999999999999999887
Q ss_pred HHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 326 YYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
. +.++.+ +++.+ ...|+.|+++|+.+++.+..+......+|
T Consensus 156 ~-~~~i~l-~i~~~-~~~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 156 S-LIGVAA-YYLCY-RLGGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred H-HHHHHH-HHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 666655 33322 22499999999999999988765555544
No 32
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.19 E-value=2.3e-08 Score=93.71 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=127.6
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFG----ETAEISNAAGKFALWMLPQLFA 76 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~yl~i~~~~~~~ 76 (396)
++..-+..||...++|.++.++..+.++.++.+++++.+.. ...++|+.+.+. -+++-...+.+-++...+++++
T Consensus 289 ~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 289 STVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 34566789999999999999999999999999999999876 889999998762 2556667777889999999999
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 77 YALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (396)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 147 (396)
..+..++...+.+.||+|+|+.+.+++.++|+++++.++. .+|..|.++++.++.++++..+++.++|+
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999966664 47788899999999999999988888776
No 33
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.90 E-value=1.3e-06 Score=83.54 Aligned_cols=203 Identities=11% Similarity=0.016 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCh-
Q 016063 164 LWAFVKLSLASAVMLCLEFWYLMLLVVITGR--LPNALIAVDAISVCMNIQGWDA-MIAIGFNAAISVRVSNELGAGNA- 239 (396)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~i~~~~~-~~~~~i~~~~~~~~s~~~g~~~~- 239 (396)
-+++++.......+++...+...-|.+++.. +.+ .++-|.|++++++-++.. .+...+-.+.....++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 3788999999999999999999999999888 665 568899999999988775 67788888888888888765433
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhh
Q 016063 240 --------RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVG 311 (396)
Q Consensus 240 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 311 (396)
++..+.....++....+++.+.......++.+.+++.++.-....+...++.++...|+.+++.+...+.++
T Consensus 331 ~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 331 KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 345556667777777777766666666777777777544322334678899999999999999999999999
Q ss_pred cCcchhHHHHHH---HHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 312 AGWQSLVAYINL---GCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 312 ~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
..+.+-....+- .. -++.+..++.+... ++|..|..+|..+...++.+.+..++++
T Consensus 411 ~a~~~~l~~~~~~m~~~-S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVF-SAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred hCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 987765433322 21 14556667777544 7899999999999999999887777765
No 34
>PRK10459 colanic acid exporter; Provisional
Probab=98.75 E-value=1.2e-05 Score=77.50 Aligned_cols=135 Identities=17% Similarity=0.028 Sum_probs=108.7
Q ss_pred hHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 016063 7 TLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQK 85 (396)
Q Consensus 7 ~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~ 85 (396)
+..++. ++|+++.++.+++.+.+...++++..+. ...++|++..+.+++ ...+...+.++.++..+.........
T Consensus 270 P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~ 345 (492)
T PRK10459 270 PVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGS 345 (492)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344553 5677888999999999888888888765 778889888765443 34567889999999999999999999
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 86 FLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (396)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 147 (396)
.+++.||.|.....+++.+++++...+.+.. .+|+.|+++++.+++.+......++..||
T Consensus 346 ~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 346 LLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888877766554443 47999999999999999988888777554
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=0.00015 Score=65.67 Aligned_cols=300 Identities=13% Similarity=0.052 Sum_probs=183.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HhC-CccchHHHHHHHHHHHHHHHHHHHH
Q 016063 67 ALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLIL-KLG-WGLIGAAITLNLSWWLIVILQLLYI 144 (396)
Q Consensus 67 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~ 144 (396)
..+...+...-.+...+.-..|...+.+.......++.++.-+.....++ +.+ .++.--|+|.......-.+...++.
T Consensus 126 I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Y 205 (530)
T KOG2864|consen 126 IFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFY 205 (530)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444555555555666666777777777777777777777433333333 222 3444555666555554444223333
Q ss_pred HHhcc--CCc---------CCCCCHH--hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Q 016063 145 FITKS--DGA---------WSGFSWL--AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPN-ALIAVDAISVCMN 210 (396)
Q Consensus 145 ~~~~~--~~~---------~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~ 210 (396)
.+.+. +.. +++.... ..-.=++..+.......+.+...+...-+..+++.... .-.+-|.|.++++
T Consensus 206 f~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n 285 (530)
T KOG2864|consen 206 FYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSN 285 (530)
T ss_pred HHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHh
Confidence 33211 100 0110000 00012456666677777777777777766666653221 0225668999988
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHH
Q 016063 211 IQGWDA-MIAIGFNAAISVRVSNELGAGNARAAKFSVL---VVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETT 286 (396)
Q Consensus 211 i~~~~~-~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 286 (396)
.-++.. ++...+-.......+|....+++|+.++... ...+....+++.........++....++.++.-....+.
T Consensus 286 ~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~ 365 (530)
T KOG2864|consen 286 YGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGS 365 (530)
T ss_pred hhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCch
Confidence 877665 6788888888888888888777777776544 444444555554444445556667777765432223355
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHH---HHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Q 016063 287 KLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAY---INLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLIL 363 (396)
Q Consensus 287 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~ 363 (396)
..+++++..+|+.+++.+..++..+.++.+-... ..++.. ++.+..+|++. -++|..|..+|..+...++.+..
T Consensus 366 ~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafS-viflilsylL~--~~~~~~GlIlANiiNm~lRIlys 442 (530)
T KOG2864|consen 366 LLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFS-VIFLILSYLLI--RWFGLVGLILANIINMSLRILYS 442 (530)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHH-HHHHHHHHHHH--HHhchhHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999877664322 222221 45667778874 34688888888888888877776
Q ss_pred HHHHHh
Q 016063 364 IVITSI 369 (396)
Q Consensus 364 ~~~~~~ 369 (396)
..++++
T Consensus 443 ~~fI~~ 448 (530)
T KOG2864|consen 443 LRFIRH 448 (530)
T ss_pred HHHHHH
Confidence 555554
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.62 E-value=5e-06 Score=79.95 Aligned_cols=126 Identities=26% Similarity=0.294 Sum_probs=108.3
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALN 80 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 80 (396)
+...-+.+++...++|+++.++..++++......+++..+. ...++|++..+.+++... +...+.+..++.++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hhHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999876 788889988765443321 456788899999999999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHH
Q 016063 81 FPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLS 132 (396)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~ 132 (396)
......+++.++.+.....+..+.++|.+++.+++.. .|..|++.++ .+
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 9999999999999999999999999999999999864 7889999999 44
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.53 E-value=5.4e-06 Score=65.68 Aligned_cols=79 Identities=25% Similarity=0.330 Sum_probs=73.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 016063 67 ALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFI 146 (396)
Q Consensus 67 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 146 (396)
+.+.+++.++..+....++.+++.||+|......+.+.++|++++++++. ++|..|+++|+.++..+......++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999975 4899999999999999999998888876
Q ss_pred h
Q 016063 147 T 147 (396)
Q Consensus 147 ~ 147 (396)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 5
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.26 E-value=0.00039 Score=61.11 Aligned_cols=186 Identities=17% Similarity=0.167 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 016063 169 KLSLASAVMLCLEFWYLMLLVV-ITGRLPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFSV 246 (396)
Q Consensus 169 ~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~~ 246 (396)
|-+......+....+...+... +...+| +++.|.++....+.++...+ ..|+.++..-..++...+ .+..++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3344444555555555444444 444455 66899999999998887765 677888888777776432 34444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHHHHHHHH
Q 016063 247 LVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCY 326 (396)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 326 (396)
..........++.......... .+.. ++.. ..+........++..........+++.++.+.....+....
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS-----FFGN-PSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HcCC-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333322 3333 3211 12222222222577888888999999999998888887775
Q ss_pred HHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 327 YIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 327 ~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
+..+.....+. ....+..+...+..++..+..+......+|
T Consensus 150 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 -LLSLLLILLLL-FLGSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred -HHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 233458888888889888888776666664
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.16 E-value=1.3e-05 Score=63.55 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhhcCcchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 016063 289 SILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITS 368 (396)
Q Consensus 289 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 368 (396)
+++++++.++.+++......+++.||+|..++.+..+. ++++++++.+ .+++|..|+++++.+++...........+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999974 8999999998 67899999999999999999998888887
Q ss_pred hc
Q 016063 369 IT 370 (396)
Q Consensus 369 ~~ 370 (396)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 74
No 40
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.03 E-value=0.0051 Score=53.56 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=86.6
Q ss_pred HHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCcc-chHH---
Q 016063 51 MLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGL-IGAA--- 126 (396)
Q Consensus 51 ~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~-~g~a--- 126 (396)
..++.+|++.+.++..+.++.+--++..+....++++-=+++.......++.-.+..++...+++.. ++.. ....
T Consensus 116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipi 194 (345)
T PF07260_consen 116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPI 194 (345)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHH
Confidence 3458899999999988888887777777888888777755555555555444444444443344421 1111 1111
Q ss_pred HHHHHHHHHHH--HHHHHHHHHhccCCcCCCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCch
Q 016063 127 ITLNLSWWLIV--ILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGR-LPNA 198 (396)
Q Consensus 127 ~a~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~ 198 (396)
++...+..+-+ +.+.++..-++......+..+.+...+++++++.+|.+.....+...--+.+.++++ ++++
T Consensus 195 l~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs 269 (345)
T PF07260_consen 195 LALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGS 269 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 22222222211 112222222221222222333445578999999999999999999998888888888 6653
No 41
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.97 E-value=0.0032 Score=54.64 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=104.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 189 VVITGRLPNALIAVDAISVCMNIQGWDAMI-AIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLAT 267 (396)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (396)
.++...++ +++.|.|+....+..+...+ ..++.+... +. .++|+++.++..+.........++...++....
T Consensus 9 ~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PF13440_consen 9 ILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLV----RS-AARDKQDIRSLLRFSLLVSLLLAVILAILAILI 81 (251)
T ss_pred HHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556 56899999988888877765 344443332 22 346677777777776665555555444433323
Q ss_pred cccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchH
Q 016063 268 RYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEG 347 (396)
Q Consensus 268 ~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 347 (396)
.. .+ ++++ ...++.+..+..++..........+++.+|.+.......... +..+.....+. ..+.+..+
T Consensus 82 ~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 150 (251)
T PF13440_consen 82 AY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLWS 150 (251)
T ss_pred HH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHHH
Confidence 22 33 3332 345666777888888999999999999999999888888875 33333333332 22337888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016063 348 IWSGMIGGIGLQTLILIVITS 368 (396)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~ 368 (396)
..++..++.++..+......+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888888888887776544333
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.84 E-value=0.008 Score=52.39 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=105.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 016063 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRL-PNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGN 238 (396)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~ 238 (396)
.....+++.++-.|..+++....+.-.+.+.-+++- .+..+.+|+|+++..+.-++..+...+-+....++.+ +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 345688999999999999999888888777666653 3334569999999999999888888877765555443 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccc-----ccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhc
Q 016063 239 ARAAKFSVLVVSITAVTIGVCCTIL-VLATRYN-----FPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGA 312 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 312 (396)
+++ +. ++......++..+.+ ..+.-.+ +-+++.-||++.+.+...+.++.+.-.++++.....+++.=.
T Consensus 81 rsr--r~---~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~ 155 (345)
T PF07260_consen 81 RSR--RK---AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKH 155 (345)
T ss_pred hhh--HH---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 221 11 222222333333222 2222222 234456789999999999999999999999999999888855
Q ss_pred CcchhHHHHHHH
Q 016063 313 GWQSLVAYINLG 324 (396)
Q Consensus 313 g~~~~~~~~~~~ 324 (396)
.++......++.
T Consensus 156 r~s~iV~~aSI~ 167 (345)
T PF07260_consen 156 RHSWIVGSASIA 167 (345)
T ss_pred cceeEeehHHHH
Confidence 555544444444
No 43
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.59 E-value=0.049 Score=48.65 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016063 72 PQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDG 151 (396)
Q Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~ 151 (396)
..........+.-.++.+.+|.+.....-.++.++..++..++-. ++..|..++-.++..+.......+..|.-...
T Consensus 139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~ 215 (467)
T COG4267 139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSS 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Confidence 334445556667788999999999999999999998887765543 68999999999999999888888887761111
Q ss_pred cCCCCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH------HHHHHHHHHHHHHHHH-----H
Q 016063 152 AWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVD------AISVCMNIQGWDAMIA-----I 220 (396)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~i~~~~~~~~-----~ 220 (396)
+...++.. ...++.. ...+..+..++.-.+|+++.-..+++++-.+ -|.++.-...+...|. .
T Consensus 216 ~~i~FdFL--~~~~~y~----SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i 289 (467)
T COG4267 216 RRIGFDFL--LYRRKYP----SLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLI 289 (467)
T ss_pred cccceehh--hhhhcch----HHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeee
Confidence 22223221 1112211 1223344455555566654443332221111 1333332222222222 2
Q ss_pred HHHHHHHHHHHHh----hcC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHH
Q 016063 221 GFNAAISVRVSNE----LGA-------GNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLS 289 (396)
Q Consensus 221 ~i~~~~~~~~s~~----~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 289 (396)
.+.+...+.--+. -|. +++++.....++.+.-..-+-...++..+++++.+...++-++. ..+.+
T Consensus 290 ~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l~lF 365 (467)
T COG4267 290 SLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YLDLF 365 (467)
T ss_pred eeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HHHHH
Confidence 2333333331111 111 33444455556666666666677788888899999998876552 34445
Q ss_pred HHHHHHHHHhhhhhhhhhHhhhcCcchhHHHHHHHHHHHhhhhHHHHHHH-hcCCCchHHHHHHHHHH
Q 016063 290 ILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGF-TFGFGAEGIWSGMIGGI 356 (396)
Q Consensus 290 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~g~~~a~~~~~ 356 (396)
++-.++.-.+......-.+.--..+.+..+..+..- .+.|..+.++... .+++--.|..+|..+.-
T Consensus 366 ~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~lgp~~~g~gff~a~fl~v 432 (467)
T COG4267 366 YVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLELGPGYYGVGFFLASFLYV 432 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHHhCccceehHHHHHHHHHH
Confidence 555555555444444444444455666555554443 3555566655532 23333334444444333
No 44
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.17 E-value=0.024 Score=54.79 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchh---H
Q 016063 20 MLGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVL---V 95 (396)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~---~ 95 (396)
+..+.+...+.+...+|+++... -..++.++..++++.-..+.+..-++.....+|+.+++.+...+.++....+ .
T Consensus 340 ~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~ 419 (549)
T PF04506_consen 340 QAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDR 419 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHH
Confidence 34556666777777777666554 5666667766644322222334557778888999999999999999886544 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 96 MAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (396)
Q Consensus 96 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 147 (396)
.........++.+..++++... ++|..|..+|+++.-..-.++...+.++.
T Consensus 420 ~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 420 YNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777778888876 79999999999999999999988888765
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.084 Score=48.51 Aligned_cols=138 Identities=16% Similarity=0.161 Sum_probs=95.4
Q ss_pred HHHhhhCCCCcch---HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016063 8 LCGQAFGAGSIRM---LGVYMQRSWVILLITSCVLSPL-YVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPI 83 (396)
Q Consensus 8 ~is~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~ 83 (396)
+.+|...++++|+ +.+++.+.+-+....|+++... ...+++++.+.+++.-.....-.-+++....+|+.+++.+.
T Consensus 305 ~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGit 384 (530)
T KOG2864|consen 305 YFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGIT 384 (530)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHH
Confidence 3455555554444 4456666666666666665544 56677777777554222222234578888999999999999
Q ss_pred HHHHHhccch---hHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 84 QKFLQAQRKV---LVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFIT 147 (396)
Q Consensus 84 ~~~l~~~~~~---~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 147 (396)
.++..+.... ........+..+...+++++++-. +|..|..+|+++...+-.+....++++.
T Consensus 385 EaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 385 EAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887543 334455566777788888998876 5669999999999888888877777765
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=84.26 E-value=33 Score=31.41 Aligned_cols=136 Identities=19% Similarity=0.098 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHH
Q 016063 217 MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITV 296 (396)
Q Consensus 217 ~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 296 (396)
.+..+++-...-.+|+..=++|.+++.+.+.-+.......+...+.++++.. ++. ...+-.......
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~~--------~~~-----si~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFVN--------NQY-----SIVYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhc--------Cch-----hHHHHHHHHHHH
Confidence 4556677777777888888899999998888877777766666664322221 222 222333445556
Q ss_pred HHhhhhhhhhhHhhhcCcchhHHHHHHHHHHHhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 297 LMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSI 369 (396)
Q Consensus 297 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 369 (396)
+..+...+....+.+++|.+.....-.++ ....+.+++++.. .++.|.-++..++..+...+...+..|
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 67777788888899999999888777777 4677777776643 589999999999998887776555554
No 47
>PRK01637 hypothetical protein; Reviewed
Probab=81.05 E-value=39 Score=29.95 Aligned_cols=17 Identities=0% Similarity=-0.112 Sum_probs=9.8
Q ss_pred HHHHHHhhhcCCCCCCC
Q 016063 377 DEAASRVMKWGGSTGEH 393 (396)
Q Consensus 377 ~~~~~~~~~~~~~~~~~ 393 (396)
++.+...++|+|+||++
T Consensus 270 ~~~~~~~~~~~~~~~~~ 286 (286)
T PRK01637 270 RKLKQAAEQEEDDEPKK 286 (286)
T ss_pred HHHhcccccccccccCC
Confidence 33445556677777653
No 48
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=68.68 E-value=51 Score=30.91 Aligned_cols=77 Identities=10% Similarity=-0.013 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 016063 171 SLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVS 250 (396)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~ 250 (396)
+.|.+++.+.--+.-....++.+...+++.+++ -+......|++.++..++++.+|+.+-.+.+|...-.+
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~---------~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALA---------LLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhh---------hhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 788888887777777777777777765444433 33356788999999999999999999988888877765
Q ss_pred HHHHHH
Q 016063 251 ITAVTI 256 (396)
Q Consensus 251 ~~~~~~ 256 (396)
....-.
T Consensus 450 Afivs~ 455 (510)
T KOG2468|consen 450 AFIVSS 455 (510)
T ss_pred HHHHHH
Confidence 444433
No 49
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=61.66 E-value=1.4e+02 Score=27.85 Aligned_cols=37 Identities=8% Similarity=-0.026 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 016063 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPF 273 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 273 (396)
.+.++.+++.+++...+.........+.....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999888888777777666
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=55.54 E-value=18 Score=27.29 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016063 346 EGIWSGMIGGIGLQTLILIVITSITN 371 (396)
Q Consensus 346 ~g~~~a~~~~~~~~~~~~~~~~~~~~ 371 (396)
.|+.++.+.+-+...++..+.++|++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444443333333444433
No 51
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=52.94 E-value=1.6e+02 Score=25.81 Aligned_cols=33 Identities=6% Similarity=-0.005 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 016063 216 AMIAIGFNAAISVRVSNELGAGNARAAKFSVLV 248 (396)
Q Consensus 216 ~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~ 248 (396)
..+...+++......=+...++|.++.++....
T Consensus 110 ~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~ 142 (265)
T TIGR00822 110 TIFVRTITVLFQHAADKAAKEANTAAISRLHVT 142 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 344555566666777777778888888766443
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=51.01 E-value=71 Score=26.88 Aligned_cols=60 Identities=5% Similarity=-0.050 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH---------HHHHHHHHHHHHHhHHHHHH
Q 016063 19 RMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAE---------ISNAAGKFALWMLPQLFAYA 78 (396)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~yl~i~~~~~~~~~ 78 (396)
++....+..++..-+.+-.++++++....|+.++++.+.- ..+-...|+++.+-++|...
T Consensus 144 ~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 144 QKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 3344444555544444444445556667777777764421 11223455655555555444
No 53
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=48.22 E-value=60 Score=22.49 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 016063 222 FNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVC 259 (396)
Q Consensus 222 i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 259 (396)
++...+..+-+.+.+||++++++.-+++..++.+-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34444556777888899999999999998887654443
No 54
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=45.89 E-value=23 Score=24.41 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 016063 387 GGSTGEHWT 395 (396)
Q Consensus 387 ~~~~~~~~~ 395 (396)
++.+++.++
T Consensus 53 SGnES~Gd~ 61 (81)
T PF00558_consen 53 SGNESDGDE 61 (81)
T ss_dssp CHCTTTTCC
T ss_pred CCCCCCCcH
Confidence 344554444
No 55
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=43.08 E-value=1.5e+02 Score=24.06 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=20.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 121 GLIGAAITLNLSWWLIVILQLLYIFIT 147 (396)
Q Consensus 121 g~~g~a~a~~i~~~~~~~~~~~~~~~~ 147 (396)
++.|...++.++.++.++....|.++-
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 445777888888888888877777654
No 56
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=39.74 E-value=2.1e+02 Score=26.41 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 016063 253 AVTIGVCCTILVL 265 (396)
Q Consensus 253 ~~~~~~~~~~~~~ 265 (396)
.+-+.+|+.++.-
T Consensus 37 v~~~~lP~liF~~ 49 (385)
T PF03547_consen 37 VFNVFLPALIFSS 49 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 3444454444333
No 57
>COG5393 Predicted membrane protein [Function unknown]
Probab=34.54 E-value=1.9e+02 Score=21.49 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=21.2
Q ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 339 FTFGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 339 ~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
+.+.+-.......+++-+.+..+.+.|.+++.
T Consensus 76 f~~tyRl~a~~a~~~vl~vl~~i~ciW~lrks 107 (131)
T COG5393 76 FDPTYRLNAMIATTAVLLVLALIGCIWTLRKS 107 (131)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555565666677777777777777776664
No 58
>PF14184 YrvL: Regulatory protein YrvL
Probab=34.12 E-value=2.2e+02 Score=21.92 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 016063 26 QRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKF-ALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVL 104 (396)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~y-l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (396)
.......+.+.++.+...+...-+.+.+|.+.|-...-..| +....++.|+..+..++...+.-.+-++.. ......
T Consensus 5 ~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l~~ 82 (132)
T PF14184_consen 5 IIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILLAF 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHHHH
Confidence 33444444555555555666677788888765443333333 444567888888887777766666333332 235566
Q ss_pred HHHHHHHHHHHHHhCCccchHHHH
Q 016063 105 VLHALFSWLLILKLGWGLIGAAIT 128 (396)
Q Consensus 105 ~~~i~l~~~li~~~~~g~~g~a~a 128 (396)
.+...+++..++..+.=+.+.-+.
T Consensus 83 ~id~~~t~~~i~~aD~~m~sI~is 106 (132)
T PF14184_consen 83 IIDFLFTWITIYTADELMESISIS 106 (132)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeC
Confidence 777788877777544333333333
No 59
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=32.75 E-value=2.9e+02 Score=23.02 Aligned_cols=66 Identities=9% Similarity=-0.114 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHH
Q 016063 217 MIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKL 288 (396)
Q Consensus 217 ~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 288 (396)
.+.+.+++. |..-..-+..+.++.++..++..... ......+.++++.+.++|+-+-+..+.+.-.
T Consensus 13 ~iinP~g~i--p~f~~lt~~~~~~~r~~ia~~a~~~a----~~ill~f~~~G~~iL~~fgIsl~af~IaGGi 78 (203)
T PF01914_consen 13 AIINPIGNI--PIFLSLTKGMSPKERRRIARRASIIA----FIILLIFAFFGQLILNFFGISLPAFRIAGGI 78 (203)
T ss_pred HHHhHHHHH--HHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344444433 55555555566677777776665444 4445577788999999997655445544443
No 60
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=30.70 E-value=1.7e+02 Score=26.20 Aligned_cols=52 Identities=12% Similarity=0.288 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhcCCCch--------HHHHHHHHHHHHHHHHHHHHHHhcCh
Q 016063 318 VAYINLGCYYIVGLPLGILLGFTFGFGAE--------GIWSGMIGGIGLQTLILIVITSITNW 372 (396)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------g~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (396)
.-..++++ .+.+|+.++-.. ++++.. ..++......++..+..+++++|++|
T Consensus 258 mk~LTvvt--~IflP~t~IaGi-yGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 258 MKILTVVS--TIFIPLTFIAGI-YGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHH--HHHHHHHHHHHH-HhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455554 466676666543 222221 12223333333444455777777777
No 61
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=30.28 E-value=2.5e+02 Score=21.40 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=10.4
Q ss_pred HHHHHhcChHHHHHHHHHH
Q 016063 364 IVITSITNWRKEADEAASR 382 (396)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~ 382 (396)
.+...+..+|++.++..|+
T Consensus 117 Iw~~~y~~~k~~i~kiN~k 135 (136)
T PF11457_consen 117 IWLIFYLYWKKDIKKINEK 135 (136)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3444444566666665554
No 62
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.79 E-value=98 Score=23.40 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 016063 125 AAITLNLSWWLIVILQLLYIFIT 147 (396)
Q Consensus 125 ~a~a~~i~~~~~~~~~~~~~~~~ 147 (396)
..++...+-+...++..++++|+
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444443
No 63
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=25.94 E-value=4.6e+02 Score=23.07 Aligned_cols=33 Identities=3% Similarity=-0.118 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 016063 216 AMIAIGFNAAISVRVSNELGAGNARAAKFSVLV 248 (396)
Q Consensus 216 ~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~ 248 (396)
..+...+.+...+..-+...++|.++.++....
T Consensus 111 ~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~ 143 (267)
T PRK09757 111 ILFFYSAFSLFMTKADKCAKEADTAAFSRLNWT 143 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 344555666677777777788888888766444
No 64
>PRK09546 zntB zinc transporter; Reviewed
Probab=25.26 E-value=2.2e+02 Score=25.70 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCc---------hHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 016063 320 YINLGCYYIVGLPLGILLGFTFGFGA---------EGIWSGMIGGIGLQTLILIVITSITNW 372 (396)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~g~---------~g~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (396)
..++++ .+.+|+.++-.+ ++++. .|-++...+ .++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGi-yGMNf~~mPel~~~~gy~~~l~i-m~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGL-FGVNLGGIPGGGWPFGFSIFCLL-LVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhh-hccccCCCCCcCCcchHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 344454 355677766543 22221 233333333 33334444667777776
No 65
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=23.99 E-value=4.8e+02 Score=22.61 Aligned_cols=9 Identities=0% Similarity=0.062 Sum_probs=4.0
Q ss_pred HHhhhCCCC
Q 016063 9 CGQAFGAGS 17 (396)
Q Consensus 9 is~~~~~~~ 17 (396)
.-+.++.++
T Consensus 107 ln~i~~~~~ 115 (259)
T TIGR00765 107 LNKIWRVKP 115 (259)
T ss_pred HHHHhCCCC
Confidence 344455443
No 66
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=22.70 E-value=7.2e+02 Score=24.21 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHh----CCccchHHHHHHHHHHHHHHHHHH
Q 016063 79 LNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKL----GWGLIGAAITLNLSWWLIVILQLL 142 (396)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~ 142 (396)
...++...++-.++.+...+...-..+-|+....+--... +.+..|--+..++..+++......
T Consensus 155 ~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~ 222 (495)
T KOG2533|consen 155 VVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIV 222 (495)
T ss_pred HHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHhe
Confidence 3345556666667777777777666666666554333211 145555556666666666655543
No 67
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.49 E-value=5.6e+02 Score=22.83 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Q 016063 74 LFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIV 137 (396)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~ 137 (396)
...........+++.|.-|.-..-+..+...+=.+++..++...++.|.....++-.+..+...
T Consensus 100 ~~iG~~lG~iaGy~gG~vD~ilmri~di~ls~P~lll~i~l~~~~g~~~~~iiial~i~~W~~~ 163 (289)
T COG1173 100 LVIGTLLGLLAGYFGGWVDRVLMRITDIFLAFPSLLLAILLVAILGPGLLNLILALALVGWPGY 163 (289)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHccHHHHHHHHHHHHCccHHHHHHHHHHHhhHHH
Confidence 3334444444455555444444445555555555566666666666666666665555555544
No 68
>PRK10739 putative antibiotic transporter; Provisional
Probab=22.42 E-value=4.6e+02 Score=21.81 Aligned_cols=65 Identities=6% Similarity=-0.016 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHH
Q 016063 218 IAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKL 288 (396)
Q Consensus 218 ~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 288 (396)
+.+.+++. |..-..-.+.++++.++..++.....+ ...+++.++++.+.++|+-+-+..+.+.-.
T Consensus 14 iinPig~i--piflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGi 78 (197)
T PRK10739 14 IMDPLGNL--PIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGI 78 (197)
T ss_pred HHhHhhHH--HHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444433 555555555677777777776654444 444577788999999998665555555443
No 69
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.31 E-value=79 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=14.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHH
Q 016063 341 FGFGAEGIWSGMIGGIGLQTLILI 364 (396)
Q Consensus 341 ~~~g~~g~~~a~~~~~~~~~~~~~ 364 (396)
.++.-.|+|+..+...++..++++
T Consensus 28 n~~~~Lgm~~lvI~~iFil~Vilw 51 (94)
T PF05393_consen 28 NNWPNLGMWFLVICGIFILLVILW 51 (94)
T ss_pred CCCCccchhHHHHHHHHHHHHHHH
Confidence 344555677777766666665543
No 70
>PTZ00370 STEVOR; Provisional
Probab=20.57 E-value=2e+02 Score=25.39 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHH
Q 016063 347 GIWSGMIGGIGLQTLILIVITSIT---NWRKEADE 378 (396)
Q Consensus 347 g~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 378 (396)
|++.-+.+--.+..+++++|++|| .||+...+
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 444333444444444445555543 46655443
Done!