Query 016063
Match_columns 396
No_of_seqs 214 out of 2059
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 07:15:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 1.8E-43 6.1E-48 335.6 26.9 367 2-370 68-446 (460)
2 3mkt_A Multi antimicrobial ext 99.8 1.4E-19 4.8E-24 171.2 17.6 208 159-370 6-217 (460)
3 4aps_A DI-OR tripeptide H+ sym 42.9 1.9E+02 0.0065 26.1 23.6 10 228-237 340-349 (491)
4 2knc_B Integrin beta-3; transm 37.0 88 0.003 20.6 5.8 24 344-367 9-32 (79)
5 4ev6_A Magnesium transport pro 33.7 78 0.0027 27.6 6.2 49 320-372 281-338 (339)
6 2k1k_A Ephrin type-A receptor 29.4 46 0.0016 18.4 2.5 11 124-134 15-25 (38)
7 2jwa_A Receptor tyrosine-prote 26.1 99 0.0034 17.7 4.2 9 139-147 30-38 (44)
8 2iub_A CORA, divalent cation t 12.1 1.1E+02 0.0039 26.8 2.6 15 358-372 348-362 (363)
9 1pw4_A Glycerol-3-phosphate tr 11.9 7.2E+02 0.024 21.6 32.8 330 26-390 92-451 (451)
10 3hd7_A Vesicle-associated memb 9.1 3.3E+02 0.011 18.3 3.5 37 231-267 49-85 (91)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=1.8e-43 Score=335.64 Aligned_cols=367 Identities=21% Similarity=0.335 Sum_probs=335.9
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNF 81 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~ 81 (396)
++|..+.++|+.|++|+++.++.+++++.+..+++++..+++.+.+|++.+++.+++..+.+..|+++..++.++..+..
T Consensus 68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 147 (460)
T 3mkt_A 68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ 147 (460)
T ss_dssp HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999888777788899999899999999999999999999999999999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH-h---CCccchHHHHHHHHHHHHHHHHHHHHHHhccCCcC---C
Q 016063 82 PIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-L---GWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAW---S 154 (396)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~---~ 154 (396)
..++.+|+.||++.++..++++.++|+++++++++. + ++|+.|+++++.+++.+..++..++.++++...+. +
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (460)
T 3mkt_A 148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227 (460)
T ss_dssp HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence 999999999999999999999999999999999975 4 69999999999999999999988888766322211 2
Q ss_pred CCCHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016063 155 GFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNEL 234 (396)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~ 234 (396)
++.+++++..|+++++|.|..++++...+.+.++..+++++| ++++++|++++++.++...+..+++++..|.+++++
T Consensus 228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~ 305 (460)
T 3mkt_A 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305 (460)
T ss_dssp CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222445678999999999999999999999999999999997 458999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCc
Q 016063 235 GAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGW 314 (396)
Q Consensus 235 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 314 (396)
|++|+++.++..+++.+....++++.+++++++++++.++|.+|+++.+.+.+++++++++.++.+++....+.+++.||
T Consensus 306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 385 (460)
T 3mkt_A 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD 385 (460)
T ss_dssp HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhhhHHHHHHHh----cC-CCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 315 QSLVAYINLGCYYIVGLPLGILLGFT----FG-FGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
++.+++.++++.+++++|+.+++... ++ +|..|+|+++.+++.+..++..++++|.
T Consensus 386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999889999999999765 56 9999999999999999988866555553
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.83 E-value=1.4e-19 Score=171.25 Aligned_cols=208 Identities=16% Similarity=0.131 Sum_probs=190.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 016063 159 LAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGN 238 (396)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~ 238 (396)
..++..|++++.++|..++++...+...+|..+++++| ++++++++.+.++..+...+..+++++..|.+++++|++|
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34578999999999999999999999999999999987 4589999999999988888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcchhH
Q 016063 239 ARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLV 318 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 318 (396)
+++.++..+.+.......+++.+++ +++.+++..++..|++..+.+..+++++.++.++..+.....+.+++.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999998765 778899999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHh----cCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016063 319 AYINLGCYYIVGLPLGILLGFT----FGFGAEGIWSGMIGGIGLQTLILIVITSIT 370 (396)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 370 (396)
+..++++. ++++.+.+.+.+. |++|+.|+++++.+++.+..+....+.+++
T Consensus 163 ~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 163 MVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999975 7888998888653 379999999999999999998877776654
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=42.94 E-value=1.9e+02 Score=26.08 Aligned_cols=10 Identities=0% Similarity=-0.140 Sum_probs=4.8
Q ss_pred HHHHHhhcCC
Q 016063 228 VRVSNELGAG 237 (396)
Q Consensus 228 ~~~s~~~g~~ 237 (396)
....+.++++
T Consensus 340 ~~l~~r~~~r 349 (491)
T 4aps_A 340 AWLWTAWKKN 349 (491)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHhcc
Confidence 3345555544
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.02 E-value=88 Score=20.56 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Q 016063 344 GAEGIWSGMIGGIGLQTLILIVIT 367 (396)
Q Consensus 344 g~~g~~~a~~~~~~~~~~~~~~~~ 367 (396)
.+.++..+++.+-++..++.++.+
T Consensus 9 n~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444433333
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.68 E-value=78 Score=27.56 Aligned_cols=49 Identities=16% Similarity=0.346 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCc---------hHHHHHHHHHHHHHHHHHHHHHHhcCh
Q 016063 320 YINLGCYYIVGLPLGILLGFTFGFGA---------EGIWSGMIGGIGLQTLILIVITSITNW 372 (396)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~g~---------~g~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (396)
..++++ .+.+|+.++-.. +++++ .|-|++..+ .++..+..+++++|++|
T Consensus 281 ~LTiit--~IflP~T~IaGi-yGMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 281 ILTMVT--TIFAVPMWITGI-YGMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHH--HHSSHHHHHHHH-TTCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHHHHhh-ccCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 345554 466777776553 22222 244444433 34444555677777777
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=29.36 E-value=46 Score=18.39 Aligned_cols=11 Identities=18% Similarity=-0.061 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 016063 124 GAAITLNLSWW 134 (396)
Q Consensus 124 g~a~a~~i~~~ 134 (396)
|..++.+.+-.
T Consensus 15 GiVvG~v~gv~ 25 (38)
T 2k1k_A 15 AVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehHHHHHHH
Confidence 33444444333
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=26.06 E-value=99 Score=17.72 Aligned_cols=9 Identities=11% Similarity=-0.156 Sum_probs=4.4
Q ss_pred HHHHHHHHh
Q 016063 139 LQLLYIFIT 147 (396)
Q Consensus 139 ~~~~~~~~~ 147 (396)
....|++|+
T Consensus 30 ~~~~~~RRR 38 (44)
T 2jwa_A 30 VFGILIKRR 38 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHhheehh
Confidence 334455555
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=12.07 E-value=1.1e+02 Score=26.79 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhcCh
Q 016063 358 LQTLILIVITSITNW 372 (396)
Q Consensus 358 ~~~~~~~~~~~~~~~ 372 (396)
+.++..+++++|++|
T Consensus 348 ~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 348 VIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHccc
Confidence 334444566666776
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=11.88 E-value=7.2e+02 Score=21.57 Aligned_cols=330 Identities=11% Similarity=-0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 016063 26 QRSWVILLITSCVLSPLYVWSPPVLMLFGETAEISNAAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLV 105 (396)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (396)
+..+....+...+..++..+.... .+.-..-.....+.-...+.................++.+.....+....+
T Consensus 92 r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 92 RVFLPAGLILAAAVMLFMGFVPWA-----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHH-----HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc-----cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-HhCCc-cchHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCH------------------------H
Q 016063 106 LHALFSWLLIL-KLGWG-LIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSW------------------------L 159 (396)
Q Consensus 106 ~~i~l~~~li~-~~~~g-~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 159 (396)
-.++...+.-. ....| .....+...+...+..+........+..+....+.+. .
T Consensus 167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (451)
T 1pw4_A 167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQ 246 (451)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHH
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cC
Q 016063 160 AFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGR-LPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNEL--GA 236 (396)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~i~~~~~~~~~~i~~~~~~~~s~~~--g~ 236 (396)
+...-+.+....+..++..............+... +|.++...+ .......+...++.......++.+ ++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 319 (451)
T 1pw4_A 247 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-------WAYFLYEYAGIPGTLLCGWMSDKVFRGN 319 (451)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcCcch
Q 016063 237 GNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQS 316 (396)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 316 (396)
++............+...+.+.+ ++..........+.-...+.+................+.+
T Consensus 320 ----------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 382 (451)
T 1pw4_A 320 ----------RGATGVFFMTLVTIATIVYWMNP-------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 382 (451)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHTTSCC-------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHH
T ss_pred ----------chhHHHHHHHHHHHHHHHHHHhc-------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhh
Q ss_pred hHHHHHHHHHH-HhhhhHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhhcCCCC
Q 016063 317 LVAYINLGCYY-IVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEADEAASRVMKWGGST 390 (396)
Q Consensus 317 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (396)
.....+..... ...+.....-......|....++.......+..++.... .+..++.+++..+|..++
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 451 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV------MIGEKRRHEQLLQELVPR 451 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHGGGGGSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH------HhhhhhhhhHHHHHhcCC
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=9.11 E-value=3.3e+02 Score=18.26 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016063 231 SNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLAT 267 (396)
Q Consensus 231 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (396)
|+.+.++-.+--++..++-+++.+++++++.+++++.
T Consensus 49 s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii 85 (91)
T 3hd7_A 49 ASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!