Query 016063
Match_columns 396
No_of_seqs 214 out of 2059
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 07:15:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016063.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016063hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 7.6 1.7E+02 0.012 15.1 4.1 28 234-261 4-31 (42)
2 d1nkzb_ f.3.1.1 (B:) Light-har 5.6 2.2E+02 0.016 14.4 4.7 34 238-271 7-40 (41)
3 d1lghb_ f.3.1.1 (B:) Light-har 5.4 2.4E+02 0.018 14.6 4.8 33 238-270 10-42 (43)
4 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.5 2.5E+02 0.018 15.3 2.1 27 9-35 2-28 (53)
5 d2iuba2 f.17.3.1 (A:286-349) M 4.3 3.4E+02 0.025 15.0 3.0 9 329-337 15-23 (64)
6 d1jo5a_ f.3.1.1 (A:) Light-har 3.8 3.5E+02 0.025 14.4 3.2 32 239-270 16-47 (48)
7 d2jrxa1 a.284.1.1 (A:1-75) Unc 3.3 3.2E+02 0.023 16.1 2.0 29 2-30 38-66 (75)
8 d1qled_ f.23.8.1 (D:) Bacteria 3.2 3.9E+02 0.028 13.8 4.8 28 234-261 5-32 (43)
9 d2juza1 a.284.1.1 (A:1-72) Unc 2.8 4.1E+02 0.03 15.4 2.1 29 2-30 38-66 (72)
10 d1ijdb_ f.3.1.1 (B:) Light-har 2.7 4.2E+02 0.031 13.2 4.7 32 238-269 8-39 (40)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.58 E-value=1.7e+02 Score=15.10 Aligned_cols=28 Identities=7% Similarity=-0.075 Sum_probs=15.2
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 016063 234 LGAGNARAAKFSVLVVSITAVTIGVCCT 261 (396)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (396)
.|+-|.+.-.+.+.--+++..-.++.+.
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i 31 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIV 31 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555544444333
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.64 E-value=2.2e+02 Score=14.43 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016063 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYNF 271 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 271 (396)
+-++..+....+.+....++++.=++.+...+|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 3467778888888888888887777777666653
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=5.36 E-value=2.4e+02 Score=14.64 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016063 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRYN 270 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (396)
+-++..+.+..++..-..++++.=++.+...|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666777778777777777777777766554
No 4
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.51 E-value=2.5e+02 Score=15.31 Aligned_cols=27 Identities=4% Similarity=-0.003 Sum_probs=17.9
Q ss_pred HHhhhCCCCcchHHHHHHHHHHHHHHH
Q 016063 9 CGQAFGAGSIRMLGVYMQRSWVILLIT 35 (396)
Q Consensus 9 is~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (396)
.++..|++..+.++..+.+...+....
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~ 28 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVG 28 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhh
Confidence 467777777777777777766555443
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.32 E-value=3.4e+02 Score=15.01 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=4.0
Q ss_pred hhhhHHHHH
Q 016063 329 VGLPLGILL 337 (396)
Q Consensus 329 ~~~~~~~~~ 337 (396)
+.+|..++-
T Consensus 15 iflP~t~i~ 23 (64)
T d2iuba2 15 IFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444443
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.80 E-value=3.5e+02 Score=14.37 Aligned_cols=32 Identities=9% Similarity=-0.053 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016063 239 ARAAKFSVLVVSITAVTIGVCCTILVLATRYN 270 (396)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (396)
-++..+.+..++..-..++++.=++.+...|+
T Consensus 16 A~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 16 AQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45566677777777777777666666666554
No 7
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL {Escherichia coli [TaxId: 562]}
Probab=3.32 E-value=3.2e+02 Score=16.09 Aligned_cols=29 Identities=10% Similarity=0.215 Sum_probs=21.0
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWV 30 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~ 30 (396)
|+.++.++.+..+..+++.+.+-+..++.
T Consensus 38 GN~vTniln~~V~~~qR~~iAe~Fa~AL~ 66 (75)
T d2jrxa1 38 GNMVTNLINTSIAPAQRQAIANSFARALQ 66 (75)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56677777777788787777777776654
No 8
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=3.16 E-value=3.9e+02 Score=13.76 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=14.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 016063 234 LGAGNARAAKFSVLVVSITAVTIGVCCT 261 (396)
Q Consensus 234 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (396)
+|+-|.+.-.+.+.--+++..-.++.+.
T Consensus 5 HG~MDi~vQEkTF~gFi~~~t~~~i~~i 32 (43)
T d1qled_ 5 HGEMDIRHQQATFAGFIKGATWVSILSI 32 (43)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655555555555555544444333
No 9
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=2.80 E-value=4.1e+02 Score=15.44 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=19.2
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHH
Q 016063 2 GSALETLCGQAFGAGSIRMLGVYMQRSWV 30 (396)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~ 30 (396)
|+..+.++.+..+..+++.+.+-+..++.
T Consensus 38 GN~vTniln~~V~~~qR~~iAe~Fa~AL~ 66 (72)
T d2juza1 38 GNMASNLLTTSVPQTQCEALAQAFSNSLI 66 (72)
T ss_dssp HHHHHHHHTTSSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 45566666666677777777776666654
No 10
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=2.69 E-value=4.2e+02 Score=13.22 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016063 238 NARAAKFSVLVVSITAVTIGVCCTILVLATRY 269 (396)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (396)
+-++..+....+.+....++++.=++.+...+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 34667777888888877777766666555544
Done!