BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016064
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 182/302 (60%), Gaps = 6/302 (1%)
Query: 99 VIDEFNNWRKQ-PDXXXXXXXXXXXXXXXXNSEAKTMMELEIELKKASDSLKSWDTTSIS 157
+I+ F + K+ PD + +T+ L L A ++L D+ S++
Sbjct: 6 LIEYFKSQXKEDPDXASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDS-SVA 64
Query: 158 LTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFGEISYKARKIIAMLSQDFIFDGC 217
+++G +LF+R+++ S LEY D++ + IER E F +R IA L FI DG
Sbjct: 65 VSSGGELFLRFISLAS-LEYSDYSKCKKIXIERGELFLRRISLSRNKIADLCHTFIKDGA 123
Query: 218 TILVHGFSRVVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAV 277
TIL H +SRVV+ VL+ A KK F V TE +PD SG + A L L+VPV +++D+AV
Sbjct: 124 TILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKXAKALCHLNVPVTVVLDAAV 183
Query: 278 AYTMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQ 337
Y ++ D+V VGA+GVVE+GGIIN +GT Q A+ A + NKP YV AES+KF RL+PL+Q
Sbjct: 184 GYIXEKADLVIVGAEGVVENGGIINKIGTNQXAVCAKAQNKPFYVVAESFKFVRLFPLNQ 243
Query: 338 KDMGPALRPIDFGVPIPSK---VEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQL 394
+D+ + + + ++ E DYT P +TLLFTDLGVLTPS VSDELI+L
Sbjct: 244 QDVPDKFKYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKL 303
Query: 395 YL 396
YL
Sbjct: 304 YL 305
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 128 NSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYE---DFNSAR 184
S+A + E E+K+A+ L T++SL +RYV + Y D R
Sbjct: 55 KSKATNVDEFWKEMKQAAKILFETRPTAVSLPNA----LRYVMHRGKIAYSSGADLEQLR 110
Query: 185 SRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRV 244
+I A++F S KA + I I DG I+ H S+ + V+K A + K +V
Sbjct: 111 FVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKV 170
Query: 245 LCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMM 304
+ TE RP G A ELA +PV ++DSA + M D V +GAD + +G +IN +
Sbjct: 171 IVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKI 230
Query: 305 GTYQIALVAHSMNKPVYVAAESYKF------ARLYPLDQKDMGPALRPIDFGVPIPSKVE 358
GT IAL A +AAE+YKF +L ++ +D + P D P +E
Sbjct: 231 GTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVI-PEDELKTWPKNIE 289
Query: 359 VETSARDYTPPQYLTLLFTDLGVLTPSVVSDEL 391
V A D TPP+Y+ ++ T+ G++ P D L
Sbjct: 290 VWNPAFDVTPPEYVDVIITERGIIPPYAAIDIL 322
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 128 NSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYE---DFNSAR 184
S+A + E E+K+A+ L T++SL +RYV + Y D R
Sbjct: 55 KSKATNVDEFWKEMKQAAKILFETRPTAVSLPNA----LRYVMHRGKIAYSSGADLEQLR 110
Query: 185 SRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFRV 244
+I A++F S KA + I I DG I+ H S+ + V+K A + K +V
Sbjct: 111 FVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKV 170
Query: 245 LCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINMM 304
+ TE RP G A ELA +PV ++DSA + M D V +GAD + +G +IN +
Sbjct: 171 IVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKI 230
Query: 305 GTYQIALVAHSMNKPVYVAAESYKF------ARLYPLDQKDMGPALRPIDFGVPIPSKVE 358
GT IAL A +AAE+YKF +L ++ +D + P D P +E
Sbjct: 231 GTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVI-PEDELKTWPKNIE 289
Query: 359 VETSARDYTPPQYLTLLFTDLGVLTPSVVSDEL 391
V A D TPP+Y+ ++ T+ G++ P D L
Sbjct: 290 VWNPAFDVTPPEYVDVIITERGIIPPYAAIDIL 322
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 130/271 (47%), Gaps = 12/271 (4%)
Query: 128 NSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYE---DFNSAR 184
S+A + E E+K+A+ L T++SL +RYV + Y D R
Sbjct: 45 KSKATNVDEFWKEMKQAAKILFETRPTAVSLPNA----LRYVMHRGKIAYSSGADLEQLR 100
Query: 185 SRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHG-FSRVVMEVLKMAAQNKKLFR 243
+I A++F S KA + I I DG I+ H S+ + V+K A + K +
Sbjct: 101 FVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIK 160
Query: 244 VLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINM 303
V+ TE RP G A ELA +PV ++DSA + M D V +GAD + +G +IN
Sbjct: 161 VIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINK 220
Query: 304 MGTYQIALVAHSMNKPVYVAAESYKF---ARLYPLDQKDMGPALRPIDFGVPIPSKVEVE 360
+GT IAL A +AAE+YKF L ++ +D + P D P +EV
Sbjct: 221 IGTALIALTAKEHRVWTMIAAETYKFHPETMLVEIEMRDPTEVI-PEDELKTWPKNIEVW 279
Query: 361 TSARDYTPPQYLTLLFTDLGVLTPSVVSDEL 391
A D TPP+Y+ ++ T+ G++ P D L
Sbjct: 280 NPAFDVTPPEYVDVIITERGIIPPYAAIDIL 310
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 131/274 (47%), Gaps = 15/274 (5%)
Query: 128 NSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYE---DFNSAR 184
S+A + E E+K+A+ L T++SL +RYV + Y D R
Sbjct: 38 KSKATNVDEFWKEMKQAAKILFETRPTAVSLPNA----LRYVMHRGKIAYSSGADLEQLR 93
Query: 185 SRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHG-FSRVVMEVLKMAAQNKKLFR 243
+I A++F S KA + I I DG I+ H S+ + V+K A + K +
Sbjct: 94 FVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIK 153
Query: 244 VLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINM 303
V+ TE RP G A ELA +PV ++DSA + M D V +GAD + +G +IN
Sbjct: 154 VIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINK 213
Query: 304 MGTYQIALVAHSMNKPVYVAAESYKF------ARLYPLDQKDMGPALRPIDFGVPIPSKV 357
+GT IAL A +AAE+YKF +L ++ +D + P D P +
Sbjct: 214 IGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVI-PEDELKTWPKNI 272
Query: 358 EVETSARDYTPPQYLTLLFTDLGVLTPSVVSDEL 391
EV A D TPP+Y+ ++ T+ G++ P D L
Sbjct: 273 EVWNPAFDVTPPEYVDVIITERGIIPPYAAIDIL 306
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 131/274 (47%), Gaps = 15/274 (5%)
Query: 128 NSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYE---DFNSAR 184
S+A + E E+K+A+ L T++SL +RYV + Y D R
Sbjct: 37 KSKATNVDEFWKEMKQAAKILFETRPTAVSLPNA----LRYVMHRGKIAYSSGADLEQLR 92
Query: 185 SRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHG-FSRVVMEVLKMAAQNKKLFR 243
+I A++F S KA + I I DG I+ H S+ + V+K A + K +
Sbjct: 93 FVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIK 152
Query: 244 VLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINM 303
V+ TE RP G A ELA +PV ++DSA + M D V +GAD + +G +IN
Sbjct: 153 VIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINK 212
Query: 304 MGTYQIALVAHSMNKPVYVAAESYKF------ARLYPLDQKDMGPALRPIDFGVPIPSKV 357
+GT IAL A +AAE+YKF +L ++ +D + P D P +
Sbjct: 213 IGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVI-PEDELKTWPKNI 271
Query: 358 EVETSARDYTPPQYLTLLFTDLGVLTPSVVSDEL 391
EV A D TPP+Y+ ++ T+ G++ P D L
Sbjct: 272 EVWNPAFDVTPPEYVDVIITERGIIPPYAAIDIL 305
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 131/274 (47%), Gaps = 15/274 (5%)
Query: 128 NSEAKTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYE---DFNSAR 184
S+A + E E+K+A+ L T++SL +RYV + Y D R
Sbjct: 39 KSKATNVDEFWKEMKQAAKILFETRPTAVSLPNA----LRYVMHRGKIAYSSGADLEQLR 94
Query: 185 SRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHG-FSRVVMEVLKMAAQNKKLFR 243
+I A++F S KA + I I DG I+ H S+ + V+K A + K +
Sbjct: 95 FVIINAAKEFIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIK 154
Query: 244 VLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINM 303
V+ TE RP G A ELA +PV ++DSA + M D V +GAD + +G +IN
Sbjct: 155 VIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINK 214
Query: 304 MGTYQIALVAHSMNKPVYVAAESYKF------ARLYPLDQKDMGPALRPIDFGVPIPSKV 357
+GT IAL A +AAE+YKF +L ++ +D + P D P +
Sbjct: 215 IGTALIALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVI-PEDELKTWPKNI 273
Query: 358 EVETSARDYTPPQYLTLLFTDLGVLTPSVVSDEL 391
EV A D TPP+Y+ ++ T+ G++ P D L
Sbjct: 274 EVWNPAFDVTPPEYVDVIITERGIIPPYAAIDIL 307
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 9/202 (4%)
Query: 184 RSRLIERAEKFGEISYKARKIIAMLSQDFIFDGCTILVHGFSRVVMEVLKMAAQNKKLFR 243
R L RA +F +A++ +A + I DG I+ H FS V+E+++ A + KK F+
Sbjct: 78 RDILKSRALEFLRRMEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFK 137
Query: 244 VLCTEGRPDRSGLRLANELAKLDVPVKLLIDSAVAYTMDEVDMVFVGADGVVESGGIINM 303
V+ TE PD GL LA EL + +++ D+ + E + VGAD + + G ++N
Sbjct: 138 VILTESSPDYEGLHLARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNK 197
Query: 304 MGTYQIALVAHSMNKPVYVAAESYKFARLYP-LDQKDMGPALRPIDFGVPIPSKVEVETS 362
GTY +AL H P YVAAE+YKF +P L D+ R + I V +
Sbjct: 198 AGTYLLALACHENAIPFYVAAETYKF---HPTLKSGDVMLMERDL-----IRGNVRIRNV 249
Query: 363 ARDYTPPQYLTLLFTDLGVLTP 384
D TP +Y+ + T+LG++ P
Sbjct: 250 LFDVTPWKYVRGIITELGIVIP 271
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 122/266 (45%), Gaps = 25/266 (9%)
Query: 136 ELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFNSARSRLIERAEKFG 195
EL+ LKKA+D L S T+++L G + + +AL+ E + + AEK
Sbjct: 72 ELKEHLKKAADFLASTRPTAVNLFVGIERAL-----NAALKGESVEEVKELALREAEKLA 126
Query: 196 EISYKARKIIAMLSQDFIFDGCTILVHGFSR--------VVMEVLKMAAQNKKLFRVLCT 247
E + + + + + DG +L + + + V++ A + K RV+
Sbjct: 127 EEDVERNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIAC 186
Query: 248 EGRPDRSGLRLAN-ELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVESGGIINMM 304
E RP G RL EL + + V L+ DS V M + VD V VGAD +V + N +
Sbjct: 187 ETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKI 245
Query: 305 GTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMGPALRPIDFGVPI------PSKVE 358
GTY +++VA N P YVAA F + KD+ RP + + P V+
Sbjct: 246 GTYTVSVVAKHHNIPFYVAAPKATFD--WERTAKDVVIEERPREELIFCGKRQIAPLNVK 303
Query: 359 VETSARDYTPPQYLTLLFTDLGVLTP 384
V A D TP + +T L T+ GV+ P
Sbjct: 304 VYNPAFDPTPLENVTALITEYGVIYP 329
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 234 MAAQNKKLFRVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMDE--VDMVFVG 290
+A Q + E RP G RL A EL + + V L+ DS A+TM E + V VG
Sbjct: 200 LAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQISAVIVG 259
Query: 291 ADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA------ESYKFARLYPLDQKDMGPAL 344
AD + ++G N +GTY +A++A++ + P +VAA K P++++D +
Sbjct: 260 ADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERD-PEEV 318
Query: 345 RPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLY 395
R I PS V V A D TP ++ + T+ G++T + +E+ QL+
Sbjct: 319 RQISGVRTAPSNVPVFNPAFDITPHDLISGIITEKGIMTGN-YEEEIEQLF 368
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 90/209 (43%), Gaps = 38/209 (18%)
Query: 203 KIIAMLSQDFIFDGCTILVHGFSRVV--------MEVLKMAAQNKKLFRVLCTEGRPDRS 254
K I I DG TIL H + + + V++ A ++ K RV E RP
Sbjct: 136 KAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQ 195
Query: 255 GLRL-ANELAKLDVPVKLLIDSAVAYTMDE--VDMVFVGADGVVESGGIINMMGTYQIAL 311
G RL A EL K + V ++ D+ + +D V VGAD + +G N +GTY +A+
Sbjct: 196 GARLTAWELXKDGIEVYVITDNXAGWLXKRGLIDAVVVGADRIALNGDTANKIGTYSLAV 255
Query: 312 VAHSMNKPVYVAAESYKFARLYPLDQKDMGPALR-----PIDFGVP-----------IPS 355
+A N P YVAA P+ D P +R PI+ P P
Sbjct: 256 LAKRNNIPFYVAA---------PVSTID--PTIRSGEEIPIEERRPEEVTHCGGNRIAPE 304
Query: 356 KVEVETSARDYTPPQYLTLLFTDLGVLTP 384
V+V A D T +T + T+ GV+ P
Sbjct: 305 GVKVLNPAFDVTENTLITAIITEKGVIRP 333
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 229 MEVLKMAAQNKKLFRVLCTEGRPDRSGLRLA-NELAKLDVPVKLLIDSAVAYTM--DEVD 285
+ V++ + KL RV E RP G RL E + D+P L+ D A + ++D
Sbjct: 199 LGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLXLNRKID 258
Query: 286 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAES 326
V VGAD + ++G N +GTY +A+ A +YVAA +
Sbjct: 259 AVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPT 299
>pdb|1W2W|B Chain B, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|F Chain F, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|J Chain J, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
pdb|1W2W|N Chain N, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1-
Phosphate Isomerase Related To Regulatory Eif2b Subunits
Length = 191
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 243 RVLCTEGRPDRSGLRL-ANELAKLDVPVKLLIDSAVAYTMD----EVDMVFVGADGVVES 297
V E RP G RL A EL +P L+ DS++AY + + FVGAD +V +
Sbjct: 6 HVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRN 65
Query: 298 GGIINMMGTYQIALVAHSMNKPVYVAA 324
G N +GT Q+A++ +V A
Sbjct: 66 GDTANKIGTLQLAVICKQFGIKFFVVA 92
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 227 VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDV--PVKLLIDSAVAYTMDEV 284
+ M+ L + +L RV+ P LRLA +L+ LD P + + +A + V
Sbjct: 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLA-DLSPLDPAGPNEECVQCDLA-DANAV 58
Query: 285 DMVFVGADGVVESGGII-----------NMMGTYQIALVAHSMNKPVYVAAESYKFARLY 333
+ + G DG+V GGI N++G Y + A + +P V A S Y
Sbjct: 59 NAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYY 118
Query: 334 PLDQKDMGPALRPIDFGVPIPSKVEVETSARDY 366
P ++ +GP + G+ SK E AR Y
Sbjct: 119 PQTER-LGPDVPARPDGLAGVSKCFGENLARMY 150
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 227 VVMEVLKMAAQNKKLFRVLCTEGRPDRSGLRLANELAKLDV--PVKLLIDSAVAYTMDEV 284
+ M+ L + +L RV+ P LRLA +L+ LD P + + +A + V
Sbjct: 1 MAMKRLLVTGAAGQLGRVMRERLAPMAEILRLA-DLSPLDPAGPNEECVQCDLA-DANAV 58
Query: 285 DMVFVGADGVVESGGII-----------NMMGTYQIALVAHSMNKPVYVAAESYKFARLY 333
+ + G DG+V GGI N++G Y + A + +P V A S Y
Sbjct: 59 NAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYY 118
Query: 334 PLDQKDMGPALRPIDFGVPIPSKVEVETSARDY 366
P ++ +GP + G+ SK E AR Y
Sbjct: 119 PQTER-LGPDVPARPDGLYGVSKCFGENLARMY 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,979,935
Number of Sequences: 62578
Number of extensions: 355299
Number of successful extensions: 867
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 18
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)